BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035957
         (211 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8K4E0|ALMS1_MOUSE Alstrom syndrome protein 1 homolog OS=Mus musculus GN=Alms1 PE=1 SV=2
          Length = 3251

 Score = 33.1 bits (74), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 88   PDFTTIFASQRFFFSSPGRSNSIIESSDINKSETHHDQETPLNGGVAVKKYSPDP-YQDF 146
            PD   +F       S+  ++ + I SS   KS   H QE P  GG AV  + P+P  Q+ 
Sbjct: 1079 PDHIEVFLKSVGSGSADRKTGAQIVSSSREKSSGFHQQELPNTGGDAVDAFHPEPVVQEV 1138

Query: 147  R 147
            R
Sbjct: 1139 R 1139


>sp|Q9LZV6|WRK62_ARATH Probable WRKY transcription factor 62 OS=Arabidopsis thaliana
           GN=WRKY62 PE=1 SV=2
          Length = 263

 Score = 32.3 bits (72), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 7/79 (8%)

Query: 62  FSTSKSLTPSTDDYFSSDTEADTVSPPDFTTIFASQRFFFSSPGRSNSIIESSDINKSET 121
           FS + S+   T+D+   D +++  SP D + +  S R      GR  S+ ESSD ++   
Sbjct: 47  FSDALSILIDTNDH--QDDQSNNSSPQDSSPVLESSRKPLHKRGRKTSMAESSDYHR--- 101

Query: 122 HHDQETPL-NGGVAVKKYS 139
            H+  TP+ + G   +KY 
Sbjct: 102 -HESSTPIYHDGFLWRKYG 119


>sp|F1Q4S1|ATP9B_DANRE Probable phospholipid-transporting ATPase IIB OS=Danio rerio
           GN=atp9b PE=2 SV=1
          Length = 1125

 Score = 32.0 bits (71), Expect = 3.0,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 28/76 (36%)

Query: 14  SSLKCLPSITPSPPSPSKLQDQDNNPSSPTSTSFLIKNFNSLYDQSSDFSTSKSLTPSTD 73
           SS    PS  P PP+P   +   +          L  N   +Y+   + + ++  +   D
Sbjct: 504 SSASSTPSRKPQPPAPKVRKSVSSRIHEAVKAIALCHNVTPVYESRVNGANAEPESTEAD 563

Query: 74  DYFSSDTEADTVSPPD 89
             FS D      S PD
Sbjct: 564 QDFSDDNRTYQASSPD 579


>sp|Q8LC53|EPF2_ARATH Protein EPIDERMAL PATTERNING FACTOR 2 OS=Arabidopsis thaliana
           GN=EPF2 PE=2 SV=1
          Length = 120

 Score = 32.0 bits (71), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 20/27 (74%)

Query: 112 ESSDINKSETHHDQETPLNGGVAVKKY 138
           +++DI +++THH +E   NGGV ++ Y
Sbjct: 41  KNADIEQAQTHHKKEISKNGGVEMEMY 67


>sp|Q63041|A1M_RAT Alpha-1-macroglobulin OS=Rattus norvegicus GN=A1m PE=1 SV=1
          Length = 1500

 Score = 31.6 bits (70), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 10/80 (12%)

Query: 10   HLCFSSLKCLPSITPSPPSPSKLQDQDNNPSSPTSTSFLIKNFNSLYDQSSDFSTS---- 65
            ++    +K +    P  PS  KLQDQ N   +  +T+ ++     L +Q+  FS +    
Sbjct: 1401 NMVIVDVKMVSGFIPVKPSVKKLQDQSNIQRTEVNTNHVLIYIEKLTNQTMGFSFAVEQD 1460

Query: 66   ---KSLTPS---TDDYFSSD 79
               K+L P+     DY+ +D
Sbjct: 1461 IPVKNLKPAPVKVYDYYETD 1480


>sp|Q9YAG3|SYS_AERPE Serine--tRNA ligase OS=Aeropyrum pernix (strain ATCC 700893 / DSM
           11879 / JCM 9820 / NBRC 100138 / K1) GN=serS PE=3 SV=2
          Length = 460

 Score = 30.8 bits (68), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 9/77 (11%)

Query: 97  QRFFFSSPGRSNSIIESSDINKSETHHDQETPLN---------GGVAVKKYSPDPYQDFR 147
           ++F +S P  S+ + E    N  E     E P           G  AVKKY  + +   +
Sbjct: 309 EQFVYSLPEESSKLHEELISNAKEIFKGLEIPFRVVNIASGDLGACAVKKYDLEAWMPAQ 368

Query: 148 CSMQEMIEARNLTDVMA 164
              +EM+ A N TD  A
Sbjct: 369 GKYREMVSASNCTDWQA 385


>sp|B6IFN4|LTN1_CAEBR E3 ubiquitin-protein ligase listerin OS=Caenorhabditis briggsae
           GN=CBG25264 PE=3 SV=1
          Length = 1503

 Score = 30.4 bits (67), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 59/141 (41%), Gaps = 15/141 (10%)

Query: 61  DFSTSKSLTPSTDDYFSSDTEADTVSPPDFTTIFASQRFFFSSPG---------RSNSII 111
           DF   K+L+ S +DYF++ ++  +    +F+ I  ++ F  +  G           N  I
Sbjct: 512 DFQIIKNLSCSENDYFNATSQKIS----NFSFIEKTENFDITQAGDIVRLIKLLLENQEI 567

Query: 112 ESSDINKSETHHDQETPLNGGVAV--KKYSPDPYQDFRCSMQEMIEARNLTDVMANCDFL 169
           +S +I+    H  +   L GG  +  K     P   F+  +    E RN T +     FL
Sbjct: 568 KSLNISVKNDHVGRRLLLTGGSTIWNKLLKNVPVSTFQNMINYWHEKRNGTAIADAVSFL 627

Query: 170 HELLLCYLTLNPKHTHKFIIS 190
            E+ +   T       +F+I+
Sbjct: 628 KEMGVEMDTKQAAENVEFLIT 648


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.129    0.381 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,655,193
Number of Sequences: 539616
Number of extensions: 2988440
Number of successful extensions: 12144
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 92
Number of HSP's that attempted gapping in prelim test: 11438
Number of HSP's gapped (non-prelim): 709
length of query: 211
length of database: 191,569,459
effective HSP length: 112
effective length of query: 99
effective length of database: 131,132,467
effective search space: 12982114233
effective search space used: 12982114233
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)