Query 035957
Match_columns 211
No_of_seqs 121 out of 222
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 13:22:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035957.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035957hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nsz_A Programmed cell death p 75.4 2.4 8.1E-05 32.6 3.5 46 142-193 2-47 (129)
2 2ion_A PDCD4, programmed cell 73.7 2.8 9.6E-05 33.3 3.7 48 141-194 3-50 (152)
3 2rg8_A Programmed cell death p 66.3 7.2 0.00025 31.2 4.6 48 142-195 5-52 (165)
4 2zu6_B Programmed cell death p 41.8 23 0.00079 31.0 4.0 49 141-195 160-208 (307)
5 3eiq_C Programmed cell death p 33.7 57 0.0019 29.3 5.3 50 139-194 209-258 (358)
6 2jyl_A Capsid protein P24 (Ca) 31.3 40 0.0014 25.6 3.4 49 139-192 31-79 (105)
7 1ug3_A EIF4GI, eukaryotic prot 30.4 46 0.0016 28.9 4.0 45 142-192 6-50 (339)
8 3a7m_A Flagellar protein FLIT; 30.3 1.4E+02 0.0047 22.9 6.4 54 143-200 11-72 (122)
9 3eiq_C Programmed cell death p 29.7 45 0.0015 30.0 3.9 46 144-195 51-96 (358)
10 3nkz_A Flagellar protein FLIT; 24.1 93 0.0032 23.9 4.4 33 143-179 14-46 (123)
11 2zu6_B Programmed cell death p 22.1 49 0.0017 28.9 2.7 44 145-194 1-44 (307)
12 2zzd_C Thiocyanate hydrolase s 22.0 64 0.0022 28.3 3.3 49 142-194 23-74 (243)
13 1ugp_A NitrIle hydratase alpha 21.1 82 0.0028 27.0 3.7 51 141-195 14-65 (203)
14 3a8g_A NitrIle hydratase subun 20.9 85 0.0029 26.9 3.8 51 140-194 16-67 (207)
15 3h3m_A Flagellar protein FLIT; 20.1 1.2E+02 0.004 23.6 4.2 34 142-179 23-56 (126)
No 1
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=75.42 E-value=2.4 Score=32.60 Aligned_cols=46 Identities=15% Similarity=0.212 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHHHcCCCcccCChHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 035957 142 PYQDFRCSMQEMIEARNLTDVMANCDFLHELLLCYLTLNPKHTHKFIISAFA 193 (211)
Q Consensus 142 Py~DFR~SM~EMI~a~~i~~~~~dwd~LeELL~cYL~LN~~~~H~~Iv~AF~ 193 (211)
|-++|++.|..+|.|---. .+++|-..|.=.||.+.+|..+|.-.+
T Consensus 2 p~eel~kki~~ll~EY~~~------~D~~Ea~~cl~eL~~p~f~~e~V~~~i 47 (129)
T 2nsz_A 2 PVNHLVKEIDMLLKEYLLS------GDISEAEHCLKELEVPHFHHELVYEAI 47 (129)
T ss_dssp CCCHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHTCGGGHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcC------CCHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 6789999999999987321 259999999999998888876665433
No 2
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=73.74 E-value=2.8 Score=33.30 Aligned_cols=48 Identities=15% Similarity=0.189 Sum_probs=38.0
Q ss_pred ChHHHHHHHHHHHHHHcCCCcccCChHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 035957 141 DPYQDFRCSMQEMIEARNLTDVMANCDFLHELLLCYLTLNPKHTHKFIISAFAD 194 (211)
Q Consensus 141 DPy~DFR~SM~EMI~a~~i~~~~~dwd~LeELL~cYL~LN~~~~H~~Iv~AF~D 194 (211)
.|-++|++.|..+|.|---. .+++|-..|.=.||.+.+|..+|.-.+.
T Consensus 3 ~~~eel~kki~~lL~EY~~~------~D~~EA~~cl~EL~~p~f~~e~V~~~i~ 50 (152)
T 2ion_A 3 QPVNHLVKEIDMLLKEYLLS------GDISEAEHCLKELEVPHFHHELVYEAIV 50 (152)
T ss_dssp CCCCHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHTCGGGHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhC------CCHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 57889999999999987321 2599999999999988888776654443
No 3
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=66.31 E-value=7.2 Score=31.24 Aligned_cols=48 Identities=10% Similarity=-0.002 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHHHcCCCcccCChHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 035957 142 PYQDFRCSMQEMIEARNLTDVMANCDFLHELLLCYLTLNPKHTHKFIISAFADI 195 (211)
Q Consensus 142 Py~DFR~SM~EMI~a~~i~~~~~dwd~LeELL~cYL~LN~~~~H~~Iv~AF~Dl 195 (211)
+-++|++.+..+|.|.=-. .+++|.+.|.=.||.+.+|..+|+..+..
T Consensus 5 s~ee~~kk~~~ii~EYf~~------~D~~Ea~~~l~eL~~p~~~~~~V~~~I~~ 52 (165)
T 2rg8_A 5 DERAFEKTLTPIIQEYFEH------GDTNEVAEMLRDLNLGEMKSGVPVLAVSL 52 (165)
T ss_dssp SHHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHTCSGGGGHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcC------CCHHHHHHHHHHhCCcccHHHHHHHHHHH
Confidence 4679999999999987221 15899999999999999999888776543
No 4
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=41.78 E-value=23 Score=31.03 Aligned_cols=49 Identities=12% Similarity=0.148 Sum_probs=38.9
Q ss_pred ChHHHHHHHHHHHHHHcCCCcccCChHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 035957 141 DPYQDFRCSMQEMIEARNLTDVMANCDFLHELLLCYLTLNPKHTHKFIISAFADI 195 (211)
Q Consensus 141 DPy~DFR~SM~EMI~a~~i~~~~~dwd~LeELL~cYL~LN~~~~H~~Iv~AF~Dl 195 (211)
-|-++|++-|.++++|--.. .+++|-..|.=.||.+.+|+.+|+..+..
T Consensus 160 ~~~eelkkki~~lL~EY~~~------~D~~EA~~ci~EL~~p~f~~e~V~~ai~~ 208 (307)
T 2zu6_B 160 QSVNHLVKEIDMLLKEYLLS------GDISEAEHCLKELEVPHFHHELVYEAIIM 208 (307)
T ss_dssp SCHHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHCCGGGHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcC------CCHHHHHHHHHHcCCCcchHHHHHHHHHH
Confidence 47799999999999987322 15999999999999888888777654443
No 5
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=33.67 E-value=57 Score=29.33 Aligned_cols=50 Identities=14% Similarity=0.174 Sum_probs=39.3
Q ss_pred CCChHHHHHHHHHHHHHHcCCCcccCChHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 035957 139 SPDPYQDFRCSMQEMIEARNLTDVMANCDFLHELLLCYLTLNPKHTHKFIISAFAD 194 (211)
Q Consensus 139 S~DPy~DFR~SM~EMI~a~~i~~~~~dwd~LeELL~cYL~LN~~~~H~~Iv~AF~D 194 (211)
...|-+++++-|...|++--. +.+++|-..|.=.||.+.+|..+|+-.+.
T Consensus 209 ~~~~veelkkki~~lL~EY~~------s~D~~EA~~ci~EL~~p~fhhe~V~~av~ 258 (358)
T 3eiq_C 209 GQQPVNHLVKEIDMLLKEYLL------SGDISEAEHCLKELEVPHFHHELVYEAIV 258 (358)
T ss_dssp SSSCHHHHHHHHHHHHHHHHH------HCCHHHHHHHHHHHCCTTCHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHhcc------CCCHHHHHHHHHHccCCcchHHHHHHHHH
Confidence 346899999999999998732 23699999999999998888766654433
No 6
>2jyl_A Capsid protein P24 (Ca); HIV-1, carboxy-terminal, dimerization domain, CTD, 3D- NMR, capsid protein (Ca), double mutant; NMR {Human immunodeficiency virus 1} PDB: 2k1c_A* 2l6e_A*
Probab=31.31 E-value=40 Score=25.61 Aligned_cols=49 Identities=24% Similarity=0.419 Sum_probs=32.4
Q ss_pred CCChHHHHHHHHHHHHHHcCCCcccCChHHHHHHHHHHHhcCCCCchHHHHHHH
Q 035957 139 SPDPYQDFRCSMQEMIEARNLTDVMANCDFLHELLLCYLTLNPKHTHKFIISAF 192 (211)
Q Consensus 139 S~DPy~DFR~SM~EMI~a~~i~~~~~dwd~LeELL~cYL~LN~~~~H~~Iv~AF 192 (211)
-.+||+||.+-..+-+++.......+.| |-+-|. |=..|+. =+.|+++.
T Consensus 31 pKEPf~dyVdR~~k~l~ae~~~~~vK~~--mt~tL~-~qNANpd--Ck~ilk~l 79 (105)
T 2jyl_A 31 PKEPFRDYVDRFYKTLRAEQASQEVKNA--ATETLL-VQNANPD--CKTILKAL 79 (105)
T ss_dssp SSSCHHHHHHHHHHHHHHHCCCTTTTTS--CHHHHH-HHTSCHH--HHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhhcchhhHHH--hhhhhh-HhhcCcc--hhhHHHcc
Confidence 4689999999999999887665444455 445443 5555544 35566665
No 7
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=30.42 E-value=46 Score=28.88 Aligned_cols=45 Identities=11% Similarity=0.092 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHHHcCCCcccCChHHHHHHHHHHHhcCCCCchHHHHHHH
Q 035957 142 PYQDFRCSMQEMIEARNLTDVMANCDFLHELLLCYLTLNPKHTHKFIISAF 192 (211)
Q Consensus 142 Py~DFR~SM~EMI~a~~i~~~~~dwd~LeELL~cYL~LN~~~~H~~Iv~AF 192 (211)
+-++|++.|..+|.|-=-. .+++|-+.|.-.||.+.+|..+|...
T Consensus 6 s~ee~~k~~~~ll~Ey~~~------~d~~Ea~~ci~el~~p~~~~~~v~~~ 50 (339)
T 1ug3_A 6 SEEELEKKSKAIIEEYLHL------NDMKEAVQCVQELASPSLLFIFVRHG 50 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHH------CCHHHHHHHHHTTCCGGGHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhC------CCHHHHHHHHHHcCCcccHHHHHHHH
Confidence 4578999999999886221 15889999999999997766555443
No 8
>3a7m_A Flagellar protein FLIT; UP-DOWN helix bundle, bacterial flagellum biogenesis, chaper cytoplasm, repressor, transcription; 3.20A {Salmonella typhimurium}
Probab=30.32 E-value=1.4e+02 Score=22.89 Aligned_cols=54 Identities=20% Similarity=0.258 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHcCCCcccCChHHHHHHHHHHHhc------C--CCCchHHHHHHHHHHHHHHc
Q 035957 143 YQDFRCSMQEMIEARNLTDVMANCDFLHELLLCYLTL------N--PKHTHKFIISAFADILISLL 200 (211)
Q Consensus 143 y~DFR~SM~EMI~a~~i~~~~~dwd~LeELL~cYL~L------N--~~~~H~~Iv~AF~Dl~~~L~ 200 (211)
|..-...-++|+++-.- +|||.|-+|=.-|+.+ + +......+...+.+++..++
T Consensus 11 Yq~i~~lS~~ML~aA~~----gdWD~Lv~lE~~y~~~Ve~l~~~~~~~~l~~~~~~~~~~lL~~IL 72 (122)
T 3a7m_A 11 WQRIALLSQSLLELAQR----GEWDLLLQQEVSYLQSIETVMEKQTPPGITRSIQDMVAGYIKQTL 72 (122)
T ss_dssp HHHHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHHHHHHSSCCCSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----CCHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHH
Confidence 55666667788876643 5799999999999975 2 33446666677777766554
No 9
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=29.69 E-value=45 Score=30.02 Aligned_cols=46 Identities=11% Similarity=0.011 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHcCCCcccCChHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 035957 144 QDFRCSMQEMIEARNLTDVMANCDFLHELLLCYLTLNPKHTHKFIISAFADI 195 (211)
Q Consensus 144 ~DFR~SM~EMI~a~~i~~~~~dwd~LeELL~cYL~LN~~~~H~~Iv~AF~Dl 195 (211)
++|++-...+|.+-=.. .+++|.+.|.=.||.+.+|..+|+-.+..
T Consensus 51 ee~~k~~~~ii~EYf~~------~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~ 96 (358)
T 3eiq_C 51 TAFEKTLTPIIQEYFEH------GDTNEVAEMLRDLNLGEMKSGVPVLAVSL 96 (358)
T ss_dssp HHHHHHHHHHHHHHHHH------CCHHHHHHHHHTTTCCGGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC------CCHHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence 79999999999987321 25899999999999999998887766543
No 10
>3nkz_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, MC midwest center for structural genomics; HET: MSE PG4; 2.11A {Yersinia enterocolitica subsp}
Probab=24.14 E-value=93 Score=23.91 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHcCCCcccCChHHHHHHHHHHHhc
Q 035957 143 YQDFRCSMQEMIEARNLTDVMANCDFLHELLLCYLTL 179 (211)
Q Consensus 143 y~DFR~SM~EMI~a~~i~~~~~dwd~LeELL~cYL~L 179 (211)
|..--..-.+|+++-.- ++||.|-+|=..|+.+
T Consensus 14 Y~~il~lS~~ML~aA~~----gdWD~Lv~lE~~y~~l 46 (123)
T 3nkz_A 14 YQQILTLSEQMLVLATE----GNWDALVDLEMTYLKA 46 (123)
T ss_dssp HHHHHHHHHHHHHHHTT----SCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----CcHHHHHHHHHHHHHH
Confidence 55566667788887654 5799999999999864
No 11
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=22.06 E-value=49 Score=28.93 Aligned_cols=44 Identities=11% Similarity=-0.010 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHcCCCcccCChHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 035957 145 DFRCSMQEMIEARNLTDVMANCDFLHELLLCYLTLNPKHTHKFIISAFAD 194 (211)
Q Consensus 145 DFR~SM~EMI~a~~i~~~~~dwd~LeELL~cYL~LN~~~~H~~Iv~AF~D 194 (211)
||++-+..+|.+---. .+++|.+.|.=.||.+.+|..+|+-.+.
T Consensus 1 e~~k~~~~ii~EYf~~------~d~~Ea~~~l~el~~p~~~~~~v~~~i~ 44 (307)
T 2zu6_B 1 AFEKTLTPIIQEYFEH------GDTNEVAEMLRDLNLGEMKSGVPVLAVS 44 (307)
T ss_dssp CHHHHHHHHHHHHHHH------CCHHHHHHHHHTTCCGGGGGGHHHHHHH
T ss_pred ChHHHHHHHHHHHHcC------CCHHHHHHHHHHhCCcchHHHHHHHHHH
Confidence 5888888888887221 1589999999999999999888887654
No 12
>2zzd_C Thiocyanate hydrolase subunit gamma; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dxc_C* 2dxb_C 2dd5_C* 2dd4_C*
Probab=21.99 E-value=64 Score=28.31 Aligned_cols=49 Identities=18% Similarity=0.237 Sum_probs=37.8
Q ss_pred hHHHHHH---HHHHHHHHcCCCcccCChHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 035957 142 PYQDFRC---SMQEMIEARNLTDVMANCDFLHELLLCYLTLNPKHTHKFIISAFAD 194 (211)
Q Consensus 142 Py~DFR~---SM~EMI~a~~i~~~~~dwd~LeELL~cYL~LN~~~~H~~Iv~AF~D 194 (211)
+..+|-. -++++..++|+.+. +++++++..|-...+..=-+++.+|++|
T Consensus 23 ~~~~~~~~~~AL~~lL~eKGli~~----~~~~~~~~~~e~~gP~~GArvVArAW~D 74 (243)
T 2zzd_C 23 EVSDFEILEMAVRELAIEKGLFSA----EDHRVWKDYVHTLGPLPAARLVAKAWLD 74 (243)
T ss_dssp CCCHHHHHHHHHHHHHHHTTSSCH----HHHHHHHHHHHHCCSHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHhccCCCCcceEEEeecCC
Confidence 4455555 89999999999753 7999999999999555556677777665
No 13
>1ugp_A NitrIle hydratase alpha subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: d.149.1.1 PDB: 1ire_A 1ugr_A 1ugq_A 1ugs_A
Probab=21.13 E-value=82 Score=26.95 Aligned_cols=51 Identities=12% Similarity=0.223 Sum_probs=41.4
Q ss_pred ChHHHHHHHHHHHHHHcCCCcccCChHHHHHHHHHHHhc-CCCCchHHHHHHHHHH
Q 035957 141 DPYQDFRCSMQEMIEARNLTDVMANCDFLHELLLCYLTL-NPKHTHKFIISAFADI 195 (211)
Q Consensus 141 DPy~DFR~SM~EMI~a~~i~~~~~dwd~LeELL~cYL~L-N~~~~H~~Iv~AF~Dl 195 (211)
.+..++-+-++++..++|+.+. +++++++..|-.- .+..--++|.+|.+|=
T Consensus 14 ~~~~~r~~AL~~lL~eKGli~~----~~id~~~~~~e~~~gP~nGA~vVArAW~Dp 65 (203)
T 1ugp_A 14 KEITARVKALESMLIEQGILTT----SMIDRMAEIYENEVGPHLGAKVVVKAWTDP 65 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCH----HHHHHHHHHHHHTSSHHHHHHHHHHHHHCH
T ss_pred ccHHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHhcccCCcccCeeeehhhCCH
Confidence 4678888999999999999753 6999999999988 6666667777877663
No 14
>3a8g_A NitrIle hydratase subunit alpha; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 3a8h_A 3a8l_A 3a8o_A 2zpb_A 2ahj_A 2cyz_A 2cz6_A 2cz7_A 2d0q_A 2cz1_A 2zpe_A 2zpf_A 2zpg_A 2zph_A 2zpi_A 2qdy_A 3a8m_A 2zcf_A 1ahj_A 2cz0_A*
Probab=20.92 E-value=85 Score=26.90 Aligned_cols=51 Identities=12% Similarity=0.279 Sum_probs=41.2
Q ss_pred CChHHHHHHHHHHHHHHcCCCcccCChHHHHHHHHHHHhc-CCCCchHHHHHHHHH
Q 035957 140 PDPYQDFRCSMQEMIEARNLTDVMANCDFLHELLLCYLTL-NPKHTHKFIISAFAD 194 (211)
Q Consensus 140 ~DPy~DFR~SM~EMI~a~~i~~~~~dwd~LeELL~cYL~L-N~~~~H~~Iv~AF~D 194 (211)
..+..++-+-++++..++|+.+. +++++++..|-.- .+..=-++|-+|.+|
T Consensus 16 ~~~~~~r~~Al~~ll~ekG~i~~----~~~~~~~~~~e~~~~P~~GA~vVArAW~D 67 (207)
T 3a8g_A 16 QAPVSDRAWALFRALDGKGLVPD----GYVEGWKKTFEEDFSPRRGAELVARAWTD 67 (207)
T ss_dssp CCCHHHHHHHHHHHHHTTTCSCT----THHHHHHHHHHHTSCHHHHHHHHHHHHHC
T ss_pred ccchHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHhcccCCccccEEeeehhCC
Confidence 45678999999999999999764 5899999999988 555556677777665
No 15
>3h3m_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, flagellum; 2.50A {Bordetella bronchiseptica}
Probab=20.09 E-value=1.2e+02 Score=23.55 Aligned_cols=34 Identities=29% Similarity=0.337 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHcCCCcccCChHHHHHHHHHHHhc
Q 035957 142 PYQDFRCSMQEMIEARNLTDVMANCDFLHELLLCYLTL 179 (211)
Q Consensus 142 Py~DFR~SM~EMI~a~~i~~~~~dwd~LeELL~cYL~L 179 (211)
=|..--..-.+|+++-.- ++||.|=+|=..|+.+
T Consensus 23 ~Yq~Il~lS~~ML~aA~~----gdWD~Lv~lE~~y~~l 56 (126)
T 3h3m_A 23 IYQDIANLTSRMLAAANA----SNWDLVLNHGQEYVCL 56 (126)
T ss_dssp HHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----CcHHHHHHHHHHHHHH
Confidence 356666667788887654 5799999999999853
Done!