Query 035957
Match_columns 211
No_of_seqs 121 out of 222
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 13:22:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035957.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035957hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2nsza1 a.118.1.14 (A:322-450) 75.5 1.1 8E-05 32.8 3.5 48 142-195 2-49 (129)
2 d2eiaa1 a.28.3.1 (A:148-222) E 51.9 5.7 0.00041 26.8 3.2 43 138-183 9-51 (75)
3 d1ug3a1 a.118.1.14 (A:1235-142 48.0 11 0.00083 28.5 4.8 45 144-195 7-52 (193)
4 d1d1da1 a.28.3.1 (A:151-230) R 30.3 33 0.0024 23.2 4.4 49 138-191 9-57 (80)
5 d1ugpa_ d.149.1.1 (A:) Cobalt- 21.3 27 0.002 27.8 2.9 45 147-195 20-65 (203)
6 d1qrjb1 a.28.3.1 (B:131-214) H 21.3 58 0.0042 22.0 4.3 50 138-192 9-58 (84)
7 d1v29a_ d.149.1.1 (A:) Cobalt- 19.6 26 0.0019 27.9 2.4 50 141-194 10-63 (203)
8 d2qdya1 d.149.1.1 (A:10-206) I 18.9 50 0.0036 26.1 3.9 52 139-194 6-58 (197)
9 d2fj6a1 a.60.15.1 (A:1-74) Hyp 18.6 75 0.0055 21.3 4.4 53 138-199 15-67 (74)
10 d1vmaa1 a.24.13.1 (A:1-81) Sig 13.1 37 0.0027 22.3 1.5 25 148-174 20-44 (81)
No 1
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=75.49 E-value=1.1 Score=32.76 Aligned_cols=48 Identities=15% Similarity=0.200 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHHcCCCcccCChHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 035957 142 PYQDFRCSMQEMIEARNLTDVMANCDFLHELLLCYLTLNPKHTHKFIISAFADI 195 (211)
Q Consensus 142 Py~DFR~SM~EMI~a~~i~~~~~dwd~LeELL~cYL~LN~~~~H~~Iv~AF~Dl 195 (211)
|-..+++.|..||.|.-.. .+++|...|.-.||.+.+|..+|+..+.+
T Consensus 2 pv~~l~kk~~~ll~EY~~~------~D~~Ea~~~l~eL~~p~~~~e~V~~~i~~ 49 (129)
T d2nsza1 2 PVNHLVKEIDMLLKEYLLS------GDISEAEHCLKELEVPHFHHELVYEAIVM 49 (129)
T ss_dssp CCCHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHTCGGGHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhC------CCHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 4456899999999987432 25899999999999988777666554443
No 2
>d2eiaa1 a.28.3.1 (A:148-222) EIAV capsid protein p26 {Equine infectious anemia virus [TaxId: 11665]}
Probab=51.94 E-value=5.7 Score=26.79 Aligned_cols=43 Identities=16% Similarity=0.279 Sum_probs=29.6
Q ss_pred eCCChHHHHHHHHHHHHHHcCCCcccCChHHHHHHHHHHHhcCCCC
Q 035957 138 YSPDPYQDFRCSMQEMIEARNLTDVMANCDFLHELLLCYLTLNPKH 183 (211)
Q Consensus 138 ~S~DPy~DFR~SM~EMI~a~~i~~~~~dwd~LeELL~cYL~LN~~~ 183 (211)
-..+||+||...+.+-+++.......+.| |-+-| +|=..|+..
T Consensus 9 GpkEpf~dfVdRl~~a~~~~~~~~~~k~~--~~~~L-~~qNANpdC 51 (75)
T d2eiaa1 9 GAKEPYPEFVDRLLSQIKSEGHPQEISKF--LTDTL-TIQNANEEC 51 (75)
T ss_dssp CTTCCHHHHHHHHHHHHHHTTCCHHHHHH--HHHHH-HHHTSCTTT
T ss_pred CCCCCHHHHHHHHHHHHHhhcCcHhHHHH--HHHHH-hHhcCCHHH
Confidence 46799999999999999988554432334 33333 477777654
No 3
>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.00 E-value=11 Score=28.48 Aligned_cols=45 Identities=13% Similarity=0.188 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHc-CCCcccCChHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 035957 144 QDFRCSMQEMIEAR-NLTDVMANCDFLHELLLCYLTLNPKHTHKFIISAFADI 195 (211)
Q Consensus 144 ~DFR~SM~EMI~a~-~i~~~~~dwd~LeELL~cYL~LN~~~~H~~Iv~AF~Dl 195 (211)
+||++-+..+|.+- ..+ ++.|...|.=.||.+.+|..+|...+..
T Consensus 7 ee~~kk~~~il~Ey~~~~-------D~~Ea~~~l~el~~p~~~~~~V~~~i~~ 52 (193)
T d1ug3a1 7 EELEKKSKAIIEEYLHLN-------DMKEAVQCVQELASPSLLFIFVRHGVES 52 (193)
T ss_dssp HHHHHHHHHHHHHHHHHC-------CHHHHHHHHHTTCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC-------CHHHHHHHHHHcCCchhHHHHHHHHHHH
Confidence 68999999999885 222 4889999999999988887766655443
No 4
>d1d1da1 a.28.3.1 (A:151-230) RSV capsid protein {Rous sarcoma virus [TaxId: 11886]}
Probab=30.31 E-value=33 Score=23.23 Aligned_cols=49 Identities=12% Similarity=0.208 Sum_probs=31.5
Q ss_pred eCCChHHHHHHHHHHHHHHcCCCcccCChHHHHHHHHHHHhcCCCCchHHHHHH
Q 035957 138 YSPDPYQDFRCSMQEMIEARNLTDVMANCDFLHELLLCYLTLNPKHTHKFIISA 191 (211)
Q Consensus 138 ~S~DPy~DFR~SM~EMI~a~~i~~~~~dwd~LeELL~cYL~LN~~~~H~~Iv~A 191 (211)
-..+||+||..-..+-++..........| -++.|+ .=|+..-=+.|++|
T Consensus 9 GpkEpf~dfVdRl~~al~~~~~~~~~k~~-~~~~L~----~qNANpdCk~iLra 57 (80)
T d1d1da1 9 GPSESFVDFANRLIKAVEGSDLPPSARAP-VIIDCF----RQKSQPDIQQLIRA 57 (80)
T ss_dssp CSSSCHHHHHHHHHHHHHTSSCCTTTTTH-HHHHHH----TTSSCHHHHHHHHT
T ss_pred CCCccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHH----HHhcCHHHHHHHHh
Confidence 35789999999999999987555443343 334443 34555555555554
No 5
>d1ugpa_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Pseudonocardia thermophila [TaxId: 1848]}
Probab=21.27 E-value=27 Score=27.84 Aligned_cols=45 Identities=13% Similarity=0.313 Sum_probs=36.4
Q ss_pred HHHHHHHHHHcCCCcccCChHHHHHHHHHHHh-cCCCCchHHHHHHHHHH
Q 035957 147 RCSMQEMIEARNLTDVMANCDFLHELLLCYLT-LNPKHTHKFIISAFADI 195 (211)
Q Consensus 147 R~SM~EMI~a~~i~~~~~dwd~LeELL~cYL~-LN~~~~H~~Iv~AF~Dl 195 (211)
-+-+++...++|+.+ -+++.+++..|-. +.+..==++|-+|.+|-
T Consensus 20 vkAle~lLieKGli~----~~~id~~ie~~e~~vgP~~GArVVARAW~Dp 65 (203)
T d1ugpa_ 20 VKALESMLIEQGILT----TSMIDRMAEIYENEVGPHLGAKVVVKAWTDP 65 (203)
T ss_dssp HHHHHHHHHHTTSCC----HHHHHHHHHHHHHTSSHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHcCCCC----HHHHHHHHHHHHhccCCcchHHHHHHHhCCH
Confidence 356778888999975 4799999999997 67777778888988773
No 6
>d1qrjb1 a.28.3.1 (B:131-214) HTLV-I capsid protein {Human T-cell leukemia virus type 1 [TaxId: 11908]}
Probab=21.26 E-value=58 Score=22.05 Aligned_cols=50 Identities=12% Similarity=0.111 Sum_probs=31.8
Q ss_pred eCCChHHHHHHHHHHHHHHcCCCcccCChHHHHHHHHHHHhcCCCCchHHHHHHH
Q 035957 138 YSPDPYQDFRCSMQEMIEARNLTDVMANCDFLHELLLCYLTLNPKHTHKFIISAF 192 (211)
Q Consensus 138 ~S~DPy~DFR~SM~EMI~a~~i~~~~~dwd~LeELL~cYL~LN~~~~H~~Iv~AF 192 (211)
-...||.||..-..+-|++.......++| |+..-+.=|+..-=+.|+++.
T Consensus 9 GpkEpf~dfVdRl~~a~~~~~~~~~~k~~-----l~~~L~~qNANpdCk~~lr~l 58 (84)
T d1qrjb1 9 GLEEPYHAFVERLNIALDNGLPEGTPKDP-----ILRSLAYSNANKECQKLLQAR 58 (84)
T ss_dssp CTTSCHHHHHHHHHHHHHTTCCTTSCCHH-----HHHHHHTTTBCHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHHHHhhcCCHHHHHH-----HHHHHHHHcccHHHHHHHHhc
Confidence 45789999999999999887554433333 233334445555556666554
No 7
>d1v29a_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Bacillus smithii [TaxId: 1479]}
Probab=19.58 E-value=26 Score=27.94 Aligned_cols=50 Identities=18% Similarity=0.363 Sum_probs=39.5
Q ss_pred ChHHHH---HHHHHHHHHHcCCCcccCChHHHHHHHHHHHh-cCCCCchHHHHHHHHH
Q 035957 141 DPYQDF---RCSMQEMIEARNLTDVMANCDFLHELLLCYLT-LNPKHTHKFIISAFAD 194 (211)
Q Consensus 141 DPy~DF---R~SM~EMI~a~~i~~~~~dwd~LeELL~cYL~-LN~~~~H~~Iv~AF~D 194 (211)
.|..|| -+.+++...++|+.+. +++++.+..|-. +++..==++|-+|.+|
T Consensus 10 ~~~s~~e~rv~ALe~LLieKGlit~----~~id~~ie~~e~~vgP~nGArvVARAW~D 63 (203)
T d1v29a_ 10 RPQSFWEARAKALESLLIEKRLLSS----DAIERVIKHYEHELGPMNGAKVVAKAWTD 63 (203)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSSCH----HHHHHHHHHHHTTCCTHHHHHHHHHHTTC
T ss_pred CCcchHHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHhccCCccHHHHHHHHhcC
Confidence 466664 3577888889999753 799999999997 5887777888888765
No 8
>d2qdya1 d.149.1.1 (A:10-206) Iron-containing nitrile hydratase {Rhodococcus erythropolis [TaxId: 1833]}
Probab=18.86 E-value=50 Score=26.11 Aligned_cols=52 Identities=12% Similarity=0.281 Sum_probs=41.8
Q ss_pred CCChHHHHHHHHHHHHHHcCCCcccCChHHHHHHHHHHHhc-CCCCchHHHHHHHHH
Q 035957 139 SPDPYQDFRCSMQEMIEARNLTDVMANCDFLHELLLCYLTL-NPKHTHKFIISAFAD 194 (211)
Q Consensus 139 S~DPy~DFR~SM~EMI~a~~i~~~~~dwd~LeELL~cYL~L-N~~~~H~~Iv~AF~D 194 (211)
..+|..+=-+.++++..++|+.+. +.+.+.+..|-.= .+..--++|-+|.+|
T Consensus 6 ~~~~i~~RvkALe~lLieKGli~~----~~vd~~ie~~e~~vgP~nGArvVAkAW~D 58 (197)
T d2qdya1 6 AQAPVSDRAWALFRALDGKGLVPD----GYVEGWKKTFEEDFSPRRGAELVARAWTD 58 (197)
T ss_dssp CCCCHHHHHHHHHHHHHTTTCSCT----THHHHHHHHHHHTSCHHHHHHHHHHHHHC
T ss_pred ccccHHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHhhccCCcchHHHHHHHhCC
Confidence 467888888999999999999764 6899999999765 455556778888776
No 9
>d2fj6a1 a.60.15.1 (A:1-74) Hypothetical protein YozE {Bacillus subtilis [TaxId: 1423]}
Probab=18.62 E-value=75 Score=21.31 Aligned_cols=53 Identities=15% Similarity=0.236 Sum_probs=34.6
Q ss_pred eCCChHHHHHHHHHHHHHHcCCCcccCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH
Q 035957 138 YSPDPYQDFRCSMQEMIEARNLTDVMANCDFLHELLLCYLTLNPKHTHKFIISAFADILISL 199 (211)
Q Consensus 138 ~S~DPy~DFR~SM~EMI~a~~i~~~~~dwd~LeELL~cYL~LN~~~~H~~Iv~AF~Dl~~~L 199 (211)
.+.||-.||-+-+ ......-....||++| .-||.+|+ .|-..+.+|-++|...
T Consensus 15 ~~~d~i~~lA~~a---~~D~~FPK~s~d~~ei----S~YLE~n~--~~l~sm~~FD~aW~~Y 67 (74)
T d2fj6a1 15 KPKDSISEFANQA---YEDHSFPKTSTDYHEI----SSYLELNA--DYLHTMATFDEAWDQY 67 (74)
T ss_dssp SCCSHHHHHHHHH---HTCTTSCTTCCCHHHH----HHHHHTSH--HHHTTHHHHHHHHHHH
T ss_pred CCCChHHHHHHHH---hcCcCCCCCCCCHHHH----HHHHHHcc--cccchHHHHHHHHHHH
Confidence 3578888886543 3333332223466555 47999986 4666799999999754
No 10
>d1vmaa1 a.24.13.1 (A:1-81) Signal recognition particle receptor, FtsY {Thermotoga maritima [TaxId: 2336]}
Probab=13.13 E-value=37 Score=22.32 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=12.6
Q ss_pred HHHHHHHHHcCCCcccCChHHHHHHHH
Q 035957 148 CSMQEMIEARNLTDVMANCDFLHELLL 174 (211)
Q Consensus 148 ~SM~EMI~a~~i~~~~~dwd~LeELL~ 174 (211)
..+..+...+.+.+ .-|++|||+|-
T Consensus 20 ~~l~~lf~~~~iDe--~~leeLEe~LI 44 (81)
T d1vmaa1 20 GRVVKLLKGKKLDD--ETREELEELLI 44 (81)
T ss_dssp HHHHHHHTTCCCCH--HHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCH--HHHHHHHHHHH
Confidence 33444443333432 23778887764
Done!