BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035959
(338 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 11/85 (12%)
Query: 229 RGYLLFGPPGTGKSSLIAAMA----NYLHFDVYDLELSSV---EGNKHLRKVL-IATENK 280
RG LLFGPPGTGKS L A+A N F + +L S E K ++ + +A ENK
Sbjct: 168 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENK 227
Query: 281 -SILVVGDID--CCTELQDRSAQAR 302
SI+ + +ID C + ++ S AR
Sbjct: 228 PSIIFIDEIDSLCGSRSENESEAAR 252
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 11/85 (12%)
Query: 229 RGYLLFGPPGTGKSSLIAAMA----NYLHFDVYDLELSS---VEGNKHLRKVL-IATENK 280
RG LLFGPPGTGKS L A+A N F + +L S E K ++ + +A ENK
Sbjct: 46 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENK 105
Query: 281 -SILVVGDID--CCTELQDRSAQAR 302
SI+ + +ID C + ++ S AR
Sbjct: 106 PSIIFIDEIDSLCGSRSENESEAAR 130
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 60/124 (48%), Gaps = 24/124 (19%)
Query: 225 RAWKRGYLLFGPPGTGKSSL---IAAMANYLHFDVYDLELSSV---EGNKHLRKVL-IAT 277
RA RG LLFGPPG GK+ L +AA +N F++ L+S EG K +R + +A
Sbjct: 145 RAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVAR 204
Query: 278 E-NKSILVVGDIDC--CTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSSCGD 334
E SI+ + +D C + +R ++ L+ F DG+ S GD
Sbjct: 205 ELQPSIIFIDQVDSLLCERREGEHDASRRLKTEF------------LIEF-DGVQ-SAGD 250
Query: 335 ERII 338
+R++
Sbjct: 251 DRVL 254
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 8/71 (11%)
Query: 230 GYLLFGPPGTGKSSL---IAAMANYLHFDVYDLELSS---VEGNKHLRKVL-IATENK-S 281
G LL+GPPGTGKS L +A AN F V +L S E K ++++ +A ENK S
Sbjct: 62 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPS 121
Query: 282 ILVVGDIDCCT 292
I+ + ++D T
Sbjct: 122 IIFIDEVDALT 132
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 8/72 (11%)
Query: 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSV------EGNKHLRKVL-IATENK- 280
RG LL+GPPGTGK+ L+ A+AN + S EG + +R V +A EN
Sbjct: 207 RGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAP 266
Query: 281 SILVVGDIDCCT 292
SI+ + ++D
Sbjct: 267 SIIFIDEVDSIA 278
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 230 GYLLFGPPGTGKSSL---IAAMANYLHFDVYDLELSS---VEGNKHLRKVL-IATENK-S 281
G LL+GPPGTGKS L +A AN F V +L S E K ++++ +A ENK S
Sbjct: 86 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPS 145
Query: 282 ILVVGDIDCCT 292
I+ + +D T
Sbjct: 146 IIFIDQVDALT 156
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 230 GYLLFGPPGTGKSSL---IAAMANYLHFDVYDLELSS---VEGNKHLRKVL-IATENK-S 281
G LL+GPPGTGKS L +A AN F V +L S E K ++++ +A ENK S
Sbjct: 53 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPS 112
Query: 282 ILVVGDIDCCT 292
I+ + +D T
Sbjct: 113 IIFIDQVDALT 123
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 15/110 (13%)
Query: 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSS-VE-----GNKHLRKVLIATENK-- 280
+G LL GPPGTGK+ L A+A H + + SS +E G +R + + +
Sbjct: 45 KGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAP 104
Query: 281 SILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWS 330
SI+ + +ID + R+A + D +R+Q TL+ LL DG S
Sbjct: 105 SIIFIDEIDAIG--KSRAAGGVVSGND----EREQ-TLNQLLAEMDGFGS 147
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 230 GYLLFGPPGTGKSSL---IAAMANYLHFDVYDLELSS---VEGNKHLRKVL-IATENK-S 281
G LL+GPPGTGKS L +A AN F V +L S E K ++++ +A ENK S
Sbjct: 71 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPS 130
Query: 282 ILVVGDIDCCT 292
I+ + +D T
Sbjct: 131 IIFIDQVDALT 141
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 34/142 (23%)
Query: 200 LDHPSTFDTLAXXXXXXXXXXXXLERAWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDL 259
+ HP F++L A +G +L+GPPGTGK+ L A+A+ H D +
Sbjct: 168 VKHPELFESLGI--------------AQPKGVILYGPPGTGKTLLARAVAH--HTDCKFI 211
Query: 260 ELSSV--------EGNKHLRKVLIATENK--SILVVGDIDCCTELQDRSAQARTASPDWH 309
+S EG++ +R++ + SI+ + +ID S +
Sbjct: 212 RVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEID--------SIGSTRVEGSGG 263
Query: 310 SPKRDQITLSGLLNFTDGLWSS 331
Q T+ LLN DG +S
Sbjct: 264 GDSEVQRTMLELLNQLDGFETS 285
>pdb|2QGZ|A Chain A, Crystal Structure Of A Putative Primosome Component From
Streptococcus Pyogenes Serotype M3. Northeast Structural
Genomics Target Dr58
Length = 308
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 11/76 (14%)
Query: 226 AWKRGYLLFGPPGTGKSSLIAAMAN-----------YLHFDVYDLELSSVEGNKHLRKVL 274
A ++G L+G G GKS L+AAMA+ LHF + +++ + N +++ +
Sbjct: 150 AEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEI 209
Query: 275 IATENKSILVVGDIDC 290
A +N +L++ DI
Sbjct: 210 DAVKNVPVLILDDIGA 225
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Query: 225 RAWKRGYLLFGPPGTGKSSL---IAAMANYLHFDVYDLELSS---VEGNKHLRKVLIAT- 277
R +G LLFGPPGTGK+ + IA+ + F + L+S EG K +R +
Sbjct: 114 RGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVAR 173
Query: 278 -ENKSILVVGDID 289
+ +++ + +ID
Sbjct: 174 CQQPAVIFIDEID 186
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Query: 223 LERAWKRGYL----LFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKVL 274
L RA + G+L L+GPPGTGK++L +A Y + DV + + G K +R+ +
Sbjct: 41 LPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERIS-AVTSGVKEIREAI 95
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 19/108 (17%)
Query: 229 RGYLLFGPPGTGKSSLIAAMAN---YLHFDVYDLELSSV---EGNKHLRKVLIATENK-- 280
RG LL+GPPGTGK+ + A+AN F + E+ S E +LRK E
Sbjct: 239 RGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAP 298
Query: 281 SILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGL 328
+I+ + ++D ++++ H +I +S LL DGL
Sbjct: 299 AIIFIDELDAIAPKREKT----------HGEVERRI-VSQLLTLMDGL 335
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 229 RGYLLFGPPGTGKSSLIAAMAN 250
+G L +GPPG GK+ L A+AN
Sbjct: 512 KGVLFYGPPGCGKTLLAKAIAN 533
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 19/108 (17%)
Query: 229 RGYLLFGPPGTGKSSLIAAMAN---YLHFDVYDLELSSV---EGNKHLRKVLIATENK-- 280
RG LL+GPPGTGK+ + A+AN F + E+ S E +LRK E
Sbjct: 239 RGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAP 298
Query: 281 SILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGL 328
+I+ + ++D ++++ H +I +S LL DGL
Sbjct: 299 AIIFIDELDAIAPKREKT----------HGEVERRI-VSQLLTLMDGL 335
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 229 RGYLLFGPPGTGKSSLIAAMAN 250
+G L +GPPG GK+ L A+AN
Sbjct: 512 KGVLFYGPPGCGKTLLAKAIAN 533
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 225 RAWKRGYLLFGPPGTGKSSLIAAM-----ANYLHFDVYDLELSSVEGNKHLRKVLIATE- 278
RA +G LLFGPPG GK+ L A+ A +L+ L V + L + L A
Sbjct: 51 RAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVAR 110
Query: 279 --NKSILVVGDID 289
SI+ + ++D
Sbjct: 111 HMQPSIIFIDEVD 123
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 52/118 (44%), Gaps = 17/118 (14%)
Query: 229 RGYLLFGPPGTGKSSLIAAMA---NYLHFDVYDLELSSV---EGNKHLRKVLIATENK-- 280
+G LL+GPPGTGK+ L A+A N V EL EG ++ + + K
Sbjct: 52 KGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAP 111
Query: 281 SILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSSCGDERII 338
SI+ + +ID A+ + Q TL LL DG + + GD +II
Sbjct: 112 SIIFIDEIDAIA--------AKRTDALTGGDREVQRTLMQLLAEMDG-FDARGDVKII 160
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 19/108 (17%)
Query: 229 RGYLLFGPPGTGKSSLIAAMAN---YLHFDVYDLELSSV---EGNKHLRKVLIATENK-- 280
RG LL+GPPGTGK+ + A+AN F + E+ S E +LRK E
Sbjct: 239 RGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAP 298
Query: 281 SILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGL 328
+I+ + ++D ++++ H +I +S LL DGL
Sbjct: 299 AIIFIDELDAIAPKREKT----------HGEVERRI-VSQLLTLMDGL 335
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 19/108 (17%)
Query: 229 RGYLLFGPPGTGKSSLIAAMAN---YLHFDVYDLELSSV---EGNKHLRKVLIATENK-- 280
RG LL+GPPGTGK+ + A+AN F + E+ S E +LRK E
Sbjct: 239 RGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAP 298
Query: 281 SILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGL 328
+I+ + ++D ++++ H +I +S LL DGL
Sbjct: 299 AIIFIDELDAIAPKREKT----------HGEVERRI-VSQLLTLMDGL 335
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 19/108 (17%)
Query: 229 RGYLLFGPPGTGKSSLIAAMAN---YLHFDVYDLELSSV---EGNKHLRKVLIATENK-- 280
RG LL+GPPGTGK+ + A+AN F + E+ S E +LRK E
Sbjct: 239 RGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAP 298
Query: 281 SILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGL 328
+I+ + ++D ++++ H +I +S LL DGL
Sbjct: 299 AIIFIDELDAIAPKREKT----------HGEVERRI-VSQLLTLMDGL 335
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 19/108 (17%)
Query: 229 RGYLLFGPPGTGKSSLIAAMAN---YLHFDVYDLELSSV---EGNKHLRKVLIATENK-- 280
RG LL+GPPGTGK+ + A+AN F + E+ S E +LRK E
Sbjct: 239 RGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAP 298
Query: 281 SILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGL 328
+I+ + ++D ++++ H +I +S LL DGL
Sbjct: 299 AIIFIDELDAIAPKREKT----------HGEVERRI-VSQLLTLMDGL 335
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 16/113 (14%)
Query: 229 RGYLLFGPPGTGKSSLIAAMAN-----YLHFDVYD-LELSSVEGNKHLRKVLIATENKS- 281
+G LL GPPGTGK+ L A+A + H D +EL G +R + + +
Sbjct: 50 KGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAP 109
Query: 282 -ILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSSCG 333
I+ + +ID + R A +R+Q TL+ LL DG S G
Sbjct: 110 CIVFIDEIDAV-------GRHRGAGLGGGHDEREQ-TLNQLLVEMDGFDSKEG 154
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 228 KRGYLLFGPPGTGKSSLI-AAMANYLHFDVYDLELSSVEGNKHLRKVL 274
KRG +L GPPG+GK+ ++ A+ N +DV + S +H+ L
Sbjct: 1048 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSAL 1095
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 228 KRGYLLFGPPGTGKSSLI-AAMANYLHFDVYDLELSSVEGNKHLRKVL 274
KRG +L GPPG+GK+ ++ A+ N +DV + S +H+ L
Sbjct: 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSAL 1314
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 224 ERAWKRGYLLFGPPGTGKSSLIAAMANYLHFDV 256
++ R LL GPPGTGK++L A+A L V
Sbjct: 73 KKXAGRAVLLAGPPGTGKTALALAIAQELGSKV 105
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Query: 232 LLFGPPGTGKSSLIAAMANYLHFDVYD---LELSS 263
L +GPPGTGK+S I A+A ++ Y LEL++
Sbjct: 50 LFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNA 84
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 229 RGYLLFGPPGTGKSSLIAAMANYLHFDV 256
R LL GPPGTGK++L A+A L V
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGSKV 91
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 16/113 (14%)
Query: 229 RGYLLFGPPGTGKSSLIAAMAN-----YLHFDVYD-LELSSVEGNKHLRKVLIATENKS- 281
+G LL GPPGTG + L A+A + H D +EL G +R + + +
Sbjct: 50 KGILLVGPPGTGATLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAP 109
Query: 282 -ILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSSCG 333
I+ + +ID + R A +R+Q TL+ LL DG S G
Sbjct: 110 CIVFIDEIDAV-------GRHRGAGLGGGHDEREQ-TLNQLLVEMDGFDSKEG 154
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 229 RGYLLFGPPGTGKSSLIAAMA 249
+G LL+GPPGTGK+ L A+A
Sbjct: 216 KGVLLYGPPGTGKTLLAKAVA 236
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 17/118 (14%)
Query: 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSV------EGNKHLRKVL-IATENK- 280
+G +L+G PGTGK+ L A+AN + S + +G + R++ +A EN
Sbjct: 217 KGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAP 276
Query: 281 SILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSSCGDERII 338
SI+ + +ID + + + Q T+ LLN DG + GD ++I
Sbjct: 277 SIVFIDEIDAIG--------TKRYDSNSGGEREIQRTMLELLNQLDG-FDDRGDVKVI 325
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 19/117 (16%)
Query: 229 RGYLLFGPPGTGKSSLI---AAMANYLHFDVYDLELSSV---EGNKHLRKVLIATENK-- 280
+G L++GPPGTGK+ L AA N + +L + EG K +R + K
Sbjct: 216 KGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAP 275
Query: 281 SILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSSCGDERI 337
+I+ + ++D + + + Q T+ LLN DG S D+R+
Sbjct: 276 TIIFIDELDAIG--------TKRFDSEKSGDREVQRTMLELLNQLDGFSS---DDRV 321
>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
pdb|1KAG|B Chain B, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
Length = 173
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 226 AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYD 258
A KR L GP G GKS++ +A L+ + YD
Sbjct: 2 AEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 16/26 (61%)
Query: 227 WKRGYLLFGPPGTGKSSLIAAMANYL 252
KR LL G PGTGKS L AMA L
Sbjct: 59 QKRHVLLIGEPGTGKSMLGQAMAELL 84
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 229 RGYLLFGPPGTGKSSLIAAMAN 250
+G LL+GPPGTGK+ A+AN
Sbjct: 244 KGILLYGPPGTGKTLCARAVAN 265
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRK-VLIATENKSIL 283
R +L+GPPG GK++ +A L +D+ + S V L V A +N S++
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVV 133
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 229 RGYLLFGPPGTGKSSLIAAMAN 250
+G L +GPPG GK+ L A+AN
Sbjct: 50 KGVLFYGPPGCGKTLLAKAIAN 71
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 9/81 (11%)
Query: 230 GYLLFGPPGTGKSSLIAAMANY--LHF-DVYDLELSSV---EGNKHLRKVLIATENKSIL 283
G LL GPPG GK+ L A+AN L+F V EL ++ E + +R+V +N +
Sbjct: 46 GVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105
Query: 284 VV--GDIDC-CTELQDRSAQA 301
V+ ++D C DR A
Sbjct: 106 VIFFDEVDALCPRRSDRETGA 126
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 232 LLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKVLIATENKSILVVGDIDCC 291
LLFGPPG GK++L +A+ L ++ ++E L +L + L GDI
Sbjct: 42 LLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANS-----LEEGDILFI 96
Query: 292 TELQDRSAQA 301
E+ S QA
Sbjct: 97 DEIHRLSRQA 106
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 232 LLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKVLIATENKSILVVGDIDCC 291
LLFGPPG GK++L +A+ L ++ ++E L +L + L GDI
Sbjct: 42 LLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANS-----LEEGDILFI 96
Query: 292 TELQDRSAQA 301
E+ S QA
Sbjct: 97 DEIHRLSRQA 106
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 22/52 (42%)
Query: 202 HPSTFDTLAXXXXXXXXXXXXLERAWKRGYLLFGPPGTGKSSLIAAMANYLH 253
P D + L+ A L +GPPGTGK+S I A+ L+
Sbjct: 32 RPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 232 LLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKVLIATENKSILVVGDIDCC 291
LLFGPPG GK++L +A+ L ++ ++E L +L + L GDI
Sbjct: 42 LLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANS-----LEEGDILFI 96
Query: 292 TELQDRSAQA 301
E+ S QA
Sbjct: 97 DEIHRLSRQA 106
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 5/92 (5%)
Query: 202 HPSTFDTLAXXXXXXXXXXXXLERAWKRG-----YLLFGPPGTGKSSLIAAMANYLHFDV 256
P + D LE A RG LL GPPG GK++L +A+ L ++
Sbjct: 20 RPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNI 79
Query: 257 YDLELSSVEGNKHLRKVLIATENKSILVVGDI 288
+ + + +L + E +L + +I
Sbjct: 80 HVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|3JVV|A Chain A, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|B Chain B, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|C Chain C, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVU|A Chain A, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|B Chain B, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|C Chain C, Crystal Structure Of Unliganded P. Aeruginosa Pilt
Length = 356
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 229 RGYLLF-GPPGTGKSSLIAAMANYLHFDVY 257
RG +L GP G+GKS+ +AAM +YL+ Y
Sbjct: 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKY 152
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 5/92 (5%)
Query: 202 HPSTFDTLAXXXXXXXXXXXXLERAWKRG-----YLLFGPPGTGKSSLIAAMANYLHFDV 256
P + D LE A RG LL GPPG GK++L +A+ L ++
Sbjct: 20 RPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNI 79
Query: 257 YDLELSSVEGNKHLRKVLIATENKSILVVGDI 288
+ + + +L + E +L + +I
Sbjct: 80 HVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 5/92 (5%)
Query: 202 HPSTFDTLAXXXXXXXXXXXXLERAWKRG-----YLLFGPPGTGKSSLIAAMANYLHFDV 256
P + D LE A RG LL GPPG GK++L +A+ L ++
Sbjct: 20 RPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNI 79
Query: 257 YDLELSSVEGNKHLRKVLIATENKSILVVGDI 288
+ + + +L + E +L + +I
Sbjct: 80 HVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 5/92 (5%)
Query: 202 HPSTFDTLAXXXXXXXXXXXXLERAWKRG-----YLLFGPPGTGKSSLIAAMANYLHFDV 256
P + D LE A RG LL GPPG GK++L +A+ L ++
Sbjct: 20 RPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNI 79
Query: 257 YDLELSSVEGNKHLRKVLIATENKSILVVGDI 288
+ + + +L + E +L + +I
Sbjct: 80 HVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 30.8 bits (68), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 5/92 (5%)
Query: 202 HPSTFDTLAXXXXXXXXXXXXLERAWKRG-----YLLFGPPGTGKSSLIAAMANYLHFDV 256
P + D LE A RG LL GPPG GK++L +A+ L ++
Sbjct: 20 RPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNI 79
Query: 257 YDLELSSVEGNKHLRKVLIATENKSILVVGDI 288
+ + + +L + E +L + +I
Sbjct: 80 HVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 30.8 bits (68), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 10/48 (20%)
Query: 229 RGYLLFGPPGTGKSSLIAAMANYLHFD----------VYDLELSSVEG 266
R L+ G PGTGK+++ MA L D ++ LE+S E
Sbjct: 71 RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEA 118
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 19/118 (16%)
Query: 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSS-VE-----GNKHLRKVLIATENKS- 281
+G L+ GPPGTGK+ L A+A + + S VE G +R + + +
Sbjct: 46 KGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAP 105
Query: 282 -ILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSSCGDERII 338
I+ + +ID + R A +R+Q TL+ +L DG G+E II
Sbjct: 106 CIIFIDEIDAV-------GRQRGAGLGGGHDEREQ-TLNQMLVEMDGFE---GNEGII 152
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 19/113 (16%)
Query: 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVE--------GNKHLRKVLIATENK 280
+G LL GPPG GK+ L A+A V L ++ E G +R + +
Sbjct: 40 KGALLLGPPGCGKTLLAKAVAT--EAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARAR 97
Query: 281 S--ILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSS 331
+ I+ + +ID + R+ + S ++ TL+ LL DG+ ++
Sbjct: 98 APCIVYIDEIDAV-------GKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTT 143
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 5/92 (5%)
Query: 202 HPSTFDTLAXXXXXXXXXXXXLERAWKRG-----YLLFGPPGTGKSSLIAAMANYLHFDV 256
P + D LE A RG LL GPPG G+++L +A+ L ++
Sbjct: 20 RPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGRTTLAHIIASELQTNI 79
Query: 257 YDLELSSVEGNKHLRKVLIATENKSILVVGDI 288
+ + + +L + E +L + +I
Sbjct: 80 HVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 229 RGYLLFGPPGTGKSSLIAAMAN 250
+G LL GPPG GK+ L A+A
Sbjct: 65 KGVLLVGPPGVGKTHLARAVAG 86
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 229 RGYLLFGPPGTGKSSLIAAMAN 250
+G LL GPPG GK+ L A+A
Sbjct: 74 KGVLLVGPPGVGKTHLARAVAG 95
>pdb|2EWV|A Chain A, Crystal Structure Of The Pilus Retraction Motor Pilt And
Bound Adp
Length = 372
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 232 LLFGPPGTGKSSLIAAMANYLH 253
L+ GP G+GKS+ IA+M +Y++
Sbjct: 140 LVTGPTGSGKSTTIASMIDYIN 161
>pdb|1G8P|A Chain A, Crystal Structure Of Bchi Subunit Of Magnesium Chelatase
pdb|2X31|G Chain G, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|H Chain H, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|I Chain I, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|J Chain J, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|K Chain K, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|L Chain L, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
Length = 350
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 6/37 (16%)
Query: 230 GYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG 266
G L+FG GTGKS+ + A+A L E+ +VEG
Sbjct: 47 GVLVFGDRGTGKSTAVRALAALLP------EIEAVEG 77
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 229 RGYLLFGPPGTGKSSLIAAMAN 250
+G LL GPPG GK+ L A+A
Sbjct: 50 KGVLLVGPPGVGKTHLARAVAG 71
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 233 LFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLR 271
L GPPG GK+SL ++A L + L V +R
Sbjct: 113 LAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIR 151
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 229 RGYLLFGPPGTGKSSLIAAMAN 250
+G LL GPPG GK+ L A+A
Sbjct: 74 KGVLLVGPPGVGKTHLARAVAG 95
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 11/78 (14%)
Query: 232 LLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKVLIATENKSILVVGDIDCC 291
L+ G G GKSSL+ + D +D EL++ G K + NK+ L + D
Sbjct: 19 LIIGESGVGKSSLLLRFTD----DTFDPELAATIGVDFKVKTISVDGNKAKLAIWD---- 70
Query: 292 TELQDRSAQARTASPDWH 309
T Q+R RT +P ++
Sbjct: 71 TAGQER---FRTLTPSYY 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,849,663
Number of Sequences: 62578
Number of extensions: 326157
Number of successful extensions: 1076
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1022
Number of HSP's gapped (non-prelim): 66
length of query: 338
length of database: 14,973,337
effective HSP length: 99
effective length of query: 239
effective length of database: 8,778,115
effective search space: 2097969485
effective search space used: 2097969485
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)