BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035959
(338 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9P6Q3|BCS1_SCHPO Probable mitochondrial chaperone bcs1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC644.07 PE=2 SV=1
Length = 449
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 86/155 (55%), Gaps = 30/155 (19%)
Query: 202 HPST---FDTLAMDTDMKKMIMDDLER-------------AWKRGYLLFGPPGTGKSSLI 245
HP + ++ +++++KKMI DD+ ++RGYLL+GPPG+GK+S +
Sbjct: 200 HPRSKRMLSSVVLESNVKKMITDDVHDFLRNSQWYDTRGIPYRRGYLLYGPPGSGKTSFL 259
Query: 246 AAMANYLHFDVYDLELSSVEG--NKHLRKVLIATENKSILVVGDIDCCTELQDRSAQART 303
A+A L +D+ L L+ +G + L +L K+++++ D+D + ++RS +
Sbjct: 260 YALAGELDYDICVLNLAE-KGLTDDRLNHLLSNVPPKAVVLLEDVDSAFQGRERSGEV-- 316
Query: 304 ASPDWHSPKRDQITLSGLLNFTDGLWSSCGDERII 338
+H+ +T SGLLN DG+ SS DERII
Sbjct: 317 ---GFHA----NVTFSGLLNALDGVTSS--DERII 342
>sp|Q54DY9|BCS1B_DICDI Probable mitochondrial chaperone BCS1-B OS=Dictyostelium discoideum
GN=bcsl1b PE=3 SV=1
Length = 458
Score = 68.6 bits (166), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 102/217 (47%), Gaps = 47/217 (21%)
Query: 157 TVLGT---YIPHILKKSKELSKKK---KTLKLFTLNCN--RINHDTRQSAILDHPSTFDT 208
T LGT ++++++KE++ +K KTL ++ + R H R+ I +
Sbjct: 156 TTLGTGRQVFQNLIEEAKEMALEKEEGKTLIYTSMGTDWRRFGHPRRKRPI-------SS 208
Query: 209 LAMDTDMKKMIMDDLER-------------AWKRGYLLFGPPGTGKSSLIAAMANYLHFD 255
+ +D ++I+ D+++ ++RGYLL+GPPGTGKSS I A+A L
Sbjct: 209 VILDKGKSELIIQDVKKFLNNSDWYNDRGIPYRRGYLLYGPPGTGKSSFITALAGELQLS 268
Query: 256 VYDLELSSVE-GNKHLRKVLIATENKSILVVGDIDCCTELQDRSAQARTASPD------- 307
+ L L+ + L ++L +SI+++ DID + + A++ S +
Sbjct: 269 ICILNLAGKSVSDTSLNQLLATAPQRSIILLEDIDSAIQTGNHDLSAKSNSANAPSISSG 328
Query: 308 -------WHSPK----RDQITLSGLLNFTDGLWSSCG 333
+ +P +T SGLLN DG+ +S G
Sbjct: 329 GLQYQGYYGNPSVSSGGSALTFSGLLNALDGVAASEG 365
>sp|P32839|BCS1_YEAST Mitochondrial chaperone BCS1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BCS1 PE=1 SV=2
Length = 456
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 77/140 (55%), Gaps = 27/140 (19%)
Query: 208 TLAMDTDMKKMIMDDL-----------ERA--WKRGYLLFGPPGTGKSSLIAAMANYLHF 254
++ +D+ +K+ I+DD+ +R ++RGYLL+GPPG+GK+S I A+A L +
Sbjct: 227 SVILDSGIKEGILDDVYDFMKNGKWYSDRGIPYRRGYLLYGPPGSGKTSFIQALAGELDY 286
Query: 255 DVYDLELSSVEGN---KHLRKVLIATENKSILVVGDIDCCTELQDRSAQARTASPDWHSP 311
++ L LS E N L ++ +SIL++ DID + +++T +HS
Sbjct: 287 NICILNLS--ENNLTDDRLNHLMNNMPERSILLLEDIDAAF-----NKRSQTGEQGFHS- 338
Query: 312 KRDQITLSGLLNFTDGLWSS 331
+T SGLLN DG+ SS
Sbjct: 339 ---SVTFSGLLNALDGVTSS 355
>sp|Q7ZTL7|BCS1_XENLA Mitochondrial chaperone BCS1 OS=Xenopus laevis GN=bcs1l PE=2 SV=1
Length = 419
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 96/199 (48%), Gaps = 26/199 (13%)
Query: 157 TVLGT---YIPHILKKSKELSKKKKTLKLFTLNCNRINHDTRQSAILDHPSTFDTLAMDT 213
T LGT +IL++++EL+ K++ K T+ N + + RQ ++ ++
Sbjct: 138 TALGTNRNIFFNILQEARELALKQQVGK--TVMYNAVGAEWRQFGFPRRRRPLSSVVLEQ 195
Query: 214 DMKKMIMDDLER-------------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDV-YDL 259
+ + I+ D++ ++RGYLL+GPPG GKSS I A+A L + +
Sbjct: 196 GISEKIVQDVKGFIENPKWYSDRGIPYRRGYLLYGPPGCGKSSFITALAGELEYSICLMS 255
Query: 260 ELSSVEGNKHLRKVLIATENKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLS 319
S + L +L +SI+++ D+D +D + Q TA ++T S
Sbjct: 256 LSDSSLSDDRLNHLLSVAPQQSIILLEDVDAAFVSRDLNKQNPTAYQG-----MGRLTFS 310
Query: 320 GLLNFTDGLWSSCGDERII 338
GLLN DG+ S+ + RI+
Sbjct: 311 GLLNALDGVAST--EARIV 327
>sp|Q54HY8|BCS1A_DICDI Probable mitochondrial chaperone BCS1-A OS=Dictyostelium discoideum
GN=bcs1la PE=3 SV=1
Length = 421
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 80/302 (26%), Positives = 135/302 (44%), Gaps = 44/302 (14%)
Query: 68 LFKAAKLYLEPKIPPNVN-RIKINLPKKESEV---------SLSVEKNQAVFDVFNGVRL 117
+FK Y+ +I N+ RI ++ K E S+ V + V+N V
Sbjct: 30 IFKNVGQYILNRINSNIYYRIDVDSKDKSFEWLLYWLSENDSIKVSNHLNAETVYNLVGK 89
Query: 118 KWKFELKPAPDQE-LCNNGNYMFKDRV--PCFELRFHKKHKETVLGTY------IPHILK 168
K L P+ + + G +++ DRV F++ + + TY I +L+
Sbjct: 90 NPKVILVPSVGKHRIVYKGKWIWIDRVRDQQFDMGAGAPFESISISTYKSNAQLINQLLQ 149
Query: 169 KSKELSKKKKTLKLFTLNCNRINHDTRQSAILDHPSTFDTLA---MDTDMKKMIMDDLE- 224
++ LS + K IN +P + +L+ + D+K +++D++
Sbjct: 150 EAMTLSLNRDIGKTVIY----INGGNGNWERFGNPRSIRSLSSVILADDLKSKLIEDIKS 205
Query: 225 ----RAW--------KRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVE-GNKHLR 271
+W +RGYLL+G PG GKSSLI A+A L+ D+ + LSS + +K +
Sbjct: 206 FITNESWYRNRGIPYRRGYLLYGEPGNGKSSLINAIAGELNLDICIVSLSSKDIDDKQIN 265
Query: 272 KVLIATENKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSS 331
+L KSIL++ DID +S + S + +S + +T SGLLN DG+ S
Sbjct: 266 HLLNNAPPKSILLIEDIDAAF----KSHRDNVDSNNNNSNNNNSLTYSGLLNALDGVASQ 321
Query: 332 CG 333
G
Sbjct: 322 EG 323
>sp|Q7ZV60|BCS1_DANRE Mitochondrial chaperone BCS1 OS=Danio rerio GN=bcs1l PE=2 SV=2
Length = 420
Score = 58.2 bits (139), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 93/187 (49%), Gaps = 22/187 (11%)
Query: 166 ILKKSKELSKKKKTLKLFTLNCNRINHDTRQSAILDHPSTFDTLAMDTDMKKMIMDDLER 225
IL++++EL+ K++ + T+ + + R ++ +++ + + I+DD++
Sbjct: 150 ILQEARELALKQEEGR--TVMYTAMGAEWRPFGFPRRRRPLSSVVLESGVAERIVDDVKE 207
Query: 226 -------------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVE-GNKHLR 271
++RGYLL+GPPG GKSS I A+A L + + + LS + L
Sbjct: 208 FIGNPKWYTDRGIPYRRGYLLYGPPGCGKSSFITALAGELGYSICLMSLSDRSLSDDRLN 267
Query: 272 KVLIATENKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSS 331
+L +SI+++ D+D ++ T +P + ++T SGLLN DG+ SS
Sbjct: 268 HLLSVAPQQSIILLEDVDAAFVSRELLP---TENPLAYQ-GMGRLTFSGLLNALDGVASS 323
Query: 332 CGDERII 338
+ RI+
Sbjct: 324 --EARIV 328
>sp|Q5E9H5|BCS1_BOVIN Mitochondrial chaperone BCS1 OS=Bos taurus GN=BCS1L PE=2 SV=1
Length = 419
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 114/251 (45%), Gaps = 41/251 (16%)
Query: 116 RLKWKFELKPAPDQE-LCNNGNYMFKDR---VPCFELRFHKKHKE---TVLGT---YIPH 165
R+ KFE P+P + G ++ +R + +L+ + T LGT +
Sbjct: 90 RISTKFEFVPSPGNHFIWYQGKWIRVERSREMQMIDLQTGTPWESVTFTALGTDRKVFFN 149
Query: 166 ILKKSKELSKKKKTLKLFTLNCNRINHDTRQSAILDHPSTFDTLAMDTDMKKMIMDDLER 225
IL++++EL+ +++ K T+ + + R +++ ++ + + I+ D+
Sbjct: 150 ILEEARELALQQEEGK--TVMYTAVGSEWRPFGYPRRRRPLNSVVLEQGVTERIVRDIRE 207
Query: 226 -------------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDV-YDLELSSVEGNKHLR 271
++RGYLL+GPPG GKSS I A+A L + S + L
Sbjct: 208 FIDNPKWYIDRGIPYRRGYLLYGPPGCGKSSFITALAGELQHSICLLSLTDSSLSDDRLN 267
Query: 272 KVLIATENKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQ----ITLSGLLNFTDG 327
+L +S++++ D+D +D +A+ +P + Q +T SGLLN DG
Sbjct: 268 HLLSVAPQQSLVLLEDVDAAFLSRDLAAE---------NPIKYQGLGRLTFSGLLNALDG 318
Query: 328 LWSSCGDERII 338
+ S+ + RI+
Sbjct: 319 VAST--EARIV 327
>sp|Q9Y276|BCS1_HUMAN Mitochondrial chaperone BCS1 OS=Homo sapiens GN=BCS1L PE=1 SV=1
Length = 419
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 112/251 (44%), Gaps = 41/251 (16%)
Query: 116 RLKWKFELKPAPDQE-LCNNGNYMFKDR---VPCFELRFHKKHKE---TVLGT---YIPH 165
R+ KFE P+P + G ++ +R + +L+ + T LGT +
Sbjct: 90 RISTKFEFVPSPGNHFIWYRGKWIRVERSREMQMIDLQTGTPWESVTFTALGTDRKVFFN 149
Query: 166 ILKKSKELSKKKKTLKLFTLNCNRINHDTRQSAILDHPSTFDTLAMDTDMKKMIMDDLER 225
IL++++EL+ +++ K T+ + + R +++ + + I+ D++
Sbjct: 150 ILEEARELALQQEEGK--TVMYTAVGSEWRPFGYPRRRRPLNSVVLQQGLADRIVRDVQE 207
Query: 226 -------------AWKRGYLLFGPPGTGKSSLIAAMANYL-HFDVYDLELSSVEGNKHLR 271
++RGYLL+GPPG GKSS I A+A L H S + L
Sbjct: 208 FIDNPKWYTDRGIPYRRGYLLYGPPGCGKSSFITALAGELEHSICLLSLTDSSLSDDRLN 267
Query: 272 KVLIATENKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQ----ITLSGLLNFTDG 327
+L +S++++ D+D +D + + +P + Q +T SGLLN DG
Sbjct: 268 HLLSVAPQQSLVLLEDVDAAFLSRDLAVE---------NPVKYQGLGRLTFSGLLNALDG 318
Query: 328 LWSSCGDERII 338
+ S+ + RI+
Sbjct: 319 VAST--EARIV 327
>sp|Q9CZP5|BCS1_MOUSE Mitochondrial chaperone BCS1 OS=Mus musculus GN=Bcs1l PE=1 SV=1
Length = 418
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 110/251 (43%), Gaps = 41/251 (16%)
Query: 116 RLKWKFELKPAPDQE-LCNNGNYMFKDR---VPCFELRFHKKHKE---TVLGT---YIPH 165
R+ KFE P+P + G ++ +R + +L+ + T LGT +
Sbjct: 90 RISTKFEFIPSPGNHFIWYQGKWIRVERNRDMQMVDLQTGTPWESVTFTALGTDRKVFFN 149
Query: 166 ILKKSKELSKKKKTLKLFTLNCNRINHDTRQSAILDHPSTFDTLAMDTDMKKMIMDDLER 225
IL++++ L+ +++ K T+ + + R D++ + + I+ D+
Sbjct: 150 ILEEARALALQQEEGK--TVMYTAVGSEWRTFGYPRRRRPLDSVVLQQGLADRIVKDIRE 207
Query: 226 -------------AWKRGYLLFGPPGTGKSSLIAAMANYL-HFDVYDLELSSVEGNKHLR 271
++RGYLL+GPPG GKSS I A+A L H S + L
Sbjct: 208 FIDNPKWYIDRGIPYRRGYLLYGPPGCGKSSFITALAGELEHSICLLSLTDSSLSDDRLN 267
Query: 272 KVLIATENKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQ----ITLSGLLNFTDG 327
+L +S++++ D+D +D + + +P + Q +T SGLLN DG
Sbjct: 268 HLLSVAPQQSLVLLEDVDAAFLSRDLAVE---------NPIKYQGLGRLTFSGLLNALDG 318
Query: 328 LWSSCGDERII 338
+ S+ + RI+
Sbjct: 319 VAST--EARIV 327
>sp|P60373|RFCL_NANEQ Replication factor C large subunit OS=Nanoarchaeum equitans (strain
Kin4-M) GN=rfcL PE=3 SV=1
Length = 430
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 13/109 (11%)
Query: 203 PSTFDTLAMDTDMKKMIMDDLERAWKRGY-----LLFGPPGTGKSSLIAAMANYLHFDVY 257
P T D + + + K I+ D +K+ Y LL+GPPGTGK+S + A+AN L ++V
Sbjct: 39 PKTLDEVE-NQEQAKQILRDYVINYKKKYKGKALLLYGPPGTGKTSSVYALANELGYEVL 97
Query: 258 DLELSSVEGNKHLRKVLI-ATENK------SILVVGDIDCCTELQDRSA 299
++ S H+ ++ A++ K I++V ++D + +DR
Sbjct: 98 EVNASDERDAIHIHHIVGEASKGKPLFHKGRIILVDEVDGLSGKEDRGG 146
>sp|Q9C5U3|PRS8A_ARATH 26S protease regulatory subunit 8 homolog A OS=Arabidopsis thaliana
GN=RPT6A PE=2 SV=1
Length = 419
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 33/142 (23%)
Query: 200 LDHPSTFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDL 259
+ HP F++L + A +G LL+GPPGTGK+ L A+A+ H D +
Sbjct: 181 IKHPELFESLGI--------------AQPKGVLLYGPPGTGKTLLARAVAH--HTDCTFI 224
Query: 260 ELSSV--------EGNKHLRKVLIATENK--SILVVGDIDCCTELQDRSAQARTASPDWH 309
+S EG++ +R++ + SI+ + +ID AR S +
Sbjct: 225 RVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSI-------GSARMESGSGN 277
Query: 310 SPKRDQITLSGLLNFTDGLWSS 331
Q T+ LLN DG +S
Sbjct: 278 GDSEVQRTMLELLNQLDGFEAS 299
>sp|Q94BQ2|PRS8B_ARATH 26S protease regulatory subunit 8 homolog B OS=Arabidopsis thaliana
GN=RPT6B PE=2 SV=1
Length = 419
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 33/142 (23%)
Query: 200 LDHPSTFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDL 259
+ HP F++L + A +G LL+GPPGTGK+ L A+A+ H D +
Sbjct: 181 IKHPELFESLGI--------------AQPKGVLLYGPPGTGKTLLARAVAH--HTDCTFI 224
Query: 260 ELSSV--------EGNKHLRKVLIATENK--SILVVGDIDCCTELQDRSAQARTASPDWH 309
+S EG++ +R++ + SI+ + +ID AR S +
Sbjct: 225 RVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSI-------GSARMESGSGN 277
Query: 310 SPKRDQITLSGLLNFTDGLWSS 331
Q T+ LLN DG +S
Sbjct: 278 GDSEVQRTMLELLNQLDGFEAS 299
>sp|Q5UPR4|YR776_MIMIV Uncharacterized protein R776 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_R776 PE=4 SV=1
Length = 314
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 26/154 (16%)
Query: 187 CNRINHDTRQSAILDHPSTFDTLAMDTDMKKMIMD------------DLERAWKRGYLLF 234
C N++ I+ P F + T+M+ ++ D +L ++RG LL+
Sbjct: 148 CYTSNNNNWSYPIIRRPCKFLDSNLTTEMRSVLKDVDVFMRNEDTYRELGANYRRGMLLY 207
Query: 235 GPPGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKVLIA-TENKSILVVGDIDCCTE 293
G G GK+ LI+ ++N D Y L L+S + + + L + + +SILV+ +ID
Sbjct: 208 GESGCGKTGLISIISNKYGMDSYILNLNSKDMSDSVLISLASNVKARSILVIEEID---- 263
Query: 294 LQDRSAQARTASPDWHSPKRDQITLSGLLNFTDG 327
Q T + + + +++ GLL+ DG
Sbjct: 264 -----KQIETLNANGNK----NVSIGGLLSALDG 288
>sp|Q719N1|SPAST_PIG Spastin (Fragment) OS=Sus scrofa GN=SPAST PE=2 SV=2
Length = 613
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 64/122 (52%), Gaps = 20/122 (16%)
Query: 225 RAWKRGYLLFGPPGTGKSSL---IAAMANYLHFDVYDLELSS---VEGNKHLRKVL-IAT 277
RA RG LLFGPPG GK+ L +AA +N F++ L+S EG K +R + +A
Sbjct: 369 RAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVAR 428
Query: 278 E-NKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSSCGDER 336
E SI+ + ++D L++R AS ++ L+ F DG+ S+ GD+R
Sbjct: 429 ELQPSIIFIDEVDSL--LRERREGEHDAS--------RRLKTEFLIEF-DGVQSA-GDDR 476
Query: 337 II 338
++
Sbjct: 477 VL 478
>sp|A6URV8|RFCL_METVS Replication factor C large subunit OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rfcL PE=3 SV=1
Length = 492
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 11/77 (14%)
Query: 232 LLFGPPGTGKSSLIAAMANYLHFDVYDLE---------LSSVEGNKHLRKVLIATENKSI 282
LLFGPPG+GK+++ A+AN +FDV +L +S V G K L T +++
Sbjct: 43 LLFGPPGSGKTTMAHAIANDYNFDVIELNASDKRNKDVISQVVGTAATSKSL--TGKRTL 100
Query: 283 LVVGDIDCCTELQDRSA 299
+V+ ++D + DR
Sbjct: 101 IVLDEVDGLSGNDDRGG 117
>sp|O34703|YJOB_BACSU Uncharacterized ATPase YjoB OS=Bacillus subtilis (strain 168)
GN=yjoB PE=1 SV=1
Length = 423
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 227 WKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKVLIATEN--KSILV 284
+KRG LL+GPPG GK++L+ ++A + V +++ ++ + +V A ++LV
Sbjct: 219 YKRGILLYGPPGNGKTTLVKSIAGSIDAPVAYWQITEFTSSETIEEVFQAARRLAPAVLV 278
Query: 285 VGDIDCCTE 293
+ DID E
Sbjct: 279 IEDIDSMPE 287
>sp|O75351|VPS4B_HUMAN Vacuolar protein sorting-associated protein 4B OS=Homo sapiens
GN=VPS4B PE=1 SV=2
Length = 444
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 11/85 (12%)
Query: 229 RGYLLFGPPGTGKSSLIAAMA----NYLHFDVYDLELSS---VEGNKHLRKVL-IATENK 280
RG LLFGPPGTGKS L A+A N F + +L S E K ++ + +A ENK
Sbjct: 168 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENK 227
Query: 281 -SILVVGDID--CCTELQDRSAQAR 302
SI+ + +ID C + ++ S AR
Sbjct: 228 PSIIFIDEIDSLCGSRSENESEAAR 252
>sp|Q2SF13|FTSH_HAHCH ATP-dependent zinc metalloprotease FtsH OS=Hahella chejuensis
(strain KCTC 2396) GN=ftsH PE=3 SV=1
Length = 619
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 87/196 (44%), Gaps = 31/196 (15%)
Query: 156 ETVLGTYIPHILKKSKELSKKKKTLKLFTLNCNRINHDTR---QSAILDHPSTFDTLAMD 212
+ +L +Y+P I+ ++T + F+ + D R Q +TFD +A
Sbjct: 122 KVILLSYLPWIMFMIILFWLSRRTFRNFSGRGGAFDFDKRLETQFECQKPDTTFDEVAGQ 181
Query: 213 TDMKKMIMD------DLERAWK------RGYLLFGPPGTGKSSLIAAMANYLHFDVYDLE 260
T+ K+ + + D +R + RG LL GPPGTGK+ L A+A + Y +
Sbjct: 182 TNAKREVQELVEYLRDPDRFHRVGALAPRGVLLMGPPGTGKTLLARALAGEAGVNFYPMS 241
Query: 261 LSS-VE-----GNKHLRKVL-IATENK-SILVVGDIDCCTELQDRSAQARTASPDWHSPK 312
S +E G +R++ IA EN SI+ + ++D + R A +
Sbjct: 242 ASEFIEVFVGVGASRVRQLFKIAKENSPSIIFIDELDSV-------GRTRGAGYGGGHDE 294
Query: 313 RDQITLSGLLNFTDGL 328
R+Q TL+ +L DG
Sbjct: 295 REQ-TLNQILAEMDGF 309
>sp|Q0VD48|VPS4B_BOVIN Vacuolar protein sorting-associated protein 4B OS=Bos taurus
GN=VPS4B PE=2 SV=1
Length = 444
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 11/85 (12%)
Query: 229 RGYLLFGPPGTGKSSLIAAMA----NYLHFDVYDLELSS---VEGNKHLRKVL-IATENK 280
RG LLFGPPGTGKS L A+A N F + +L S E K ++ + +A ENK
Sbjct: 168 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENK 227
Query: 281 -SILVVGDID--CCTELQDRSAQAR 302
SI+ + +ID C + ++ S AR
Sbjct: 228 PSIIFIDEIDSLCGSRSENESEAAR 252
>sp|Q5R658|VPS4B_PONAB Vacuolar protein sorting-associated protein 4B OS=Pongo abelii
GN=VPS4B PE=2 SV=1
Length = 444
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 11/85 (12%)
Query: 229 RGYLLFGPPGTGKSSLIAAMA----NYLHFDVYDLELSS---VEGNKHLRKVL-IATENK 280
RG LLFGPPGTGKS L A+A N F + +L S E K ++ + +A ENK
Sbjct: 168 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENK 227
Query: 281 -SILVVGDID--CCTELQDRSAQAR 302
SI+ + +ID C + ++ S AR
Sbjct: 228 PSIIFIDEIDSLCGSRSENESEAAR 252
>sp|Q6NW58|SPAST_DANRE Spastin OS=Danio rerio GN=spast PE=2 SV=2
Length = 570
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 60/124 (48%), Gaps = 24/124 (19%)
Query: 225 RAWKRGYLLFGPPGTGKSSLIAAMA---NYLHFDVYDLELSS---VEGNKHLRKVL-IAT 277
RA RG LLFGPPG GK+ L A+A N F++ L+S EG K +R + +A
Sbjct: 325 RAPARGLLLFGPPGNGKTMLAKAVAMESNATFFNISAATLTSKYVGEGEKLVRALFAVAR 384
Query: 278 E-NKSILVVGDIDC--CTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSSCGD 334
E SI+ + +ID C + +R ++ L+ F DG+ S GD
Sbjct: 385 ELQPSIIFIDEIDSLLCERREGEHDASRRLKTEF------------LIEF-DGVQSG-GD 430
Query: 335 ERII 338
ER++
Sbjct: 431 ERVL 434
>sp|P46467|VPS4B_MOUSE Vacuolar protein sorting-associated protein 4B OS=Mus musculus
GN=Vps4b PE=1 SV=2
Length = 444
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 11/85 (12%)
Query: 229 RGYLLFGPPGTGKSSLIAAMA----NYLHFDVYDLELSS---VEGNKHLRKVL-IATENK 280
RG LLFGPPGTGKS L A+A N F + +L S E K ++ + +A ENK
Sbjct: 168 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENK 227
Query: 281 -SILVVGDID--CCTELQDRSAQAR 302
SI+ + +ID C + ++ S AR
Sbjct: 228 PSIIFIDEIDSLCGSRSENESEAAR 252
>sp|Q9UBP0|SPAST_HUMAN Spastin OS=Homo sapiens GN=SPAST PE=1 SV=1
Length = 616
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 61/124 (49%), Gaps = 24/124 (19%)
Query: 225 RAWKRGYLLFGPPGTGKSSL---IAAMANYLHFDVYDLELSS---VEGNKHLRKVL-IAT 277
RA RG LLFGPPG GK+ L +AA +N F++ L+S EG K +R + +A
Sbjct: 372 RAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVAR 431
Query: 278 E-NKSILVVGDIDC--CTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSSCGD 334
E SI+ + ++D C + +R ++ L+ F DG+ S GD
Sbjct: 432 ELQPSIIFIDEVDSLLCERREGEHDASRRLKTEF------------LIEF-DGV-QSAGD 477
Query: 335 ERII 338
+R++
Sbjct: 478 DRVL 481
>sp|Q58556|Y1156_METJA Cell division cycle protein 48 homolog MJ1156 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1156 PE=3 SV=1
Length = 903
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 47/144 (32%)
Query: 200 LDHPSTFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDL 259
+ HP F+ L ++ +G LL GPPGTGK+ L A+AN + Y +
Sbjct: 199 MRHPELFEKLGIEP--------------PKGVLLVGPPGTGKTLLAKAVANEAGANFYVI 244
Query: 260 ELSSV------EGNKHLRKVLIATENK--SILVVGDIDCCTELQDRSAQARTASPDWHSP 311
+ E ++LRK+ E SI+ + +ID +P
Sbjct: 245 NGPEIMSKYVGETEENLRKIFEEAEENAPSIIFIDEIDAI------------------AP 286
Query: 312 KRDQIT-------LSGLLNFTDGL 328
KRD+ T ++ LL DGL
Sbjct: 287 KRDEATGEVERRLVAQLLTLMDGL 310
Score = 37.4 bits (85), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/22 (68%), Positives = 18/22 (81%)
Query: 229 RGYLLFGPPGTGKSSLIAAMAN 250
+G LLFGPPGTGK+ L A+AN
Sbjct: 487 KGVLLFGPPGTGKTLLAKAVAN 508
>sp|Q9QYY8|SPAST_MOUSE Spastin OS=Mus musculus GN=Spast PE=2 SV=3
Length = 614
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 24/124 (19%)
Query: 225 RAWKRGYLLFGPPGTGKSSL---IAAMANYLHFDVYDLELSS---VEGNKHLRKVL-IAT 277
RA RG LLFGPPG GK+ L +AA +N F++ L+S EG K +R + +A
Sbjct: 370 RAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVAR 429
Query: 278 E-NKSILVVGDIDC--CTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSSCGD 334
E SI+ + ++D C + +R ++ L+ F DG+ S+ GD
Sbjct: 430 ELQPSIIFIDEVDSLLCERREGEHDASRRLKTEF------------LIEF-DGVQSA-GD 475
Query: 335 ERII 338
+R++
Sbjct: 476 DRVL 479
>sp|A2VDN5|SPAST_BOVIN Spastin OS=Bos taurus GN=SPAST PE=2 SV=1
Length = 614
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 24/124 (19%)
Query: 225 RAWKRGYLLFGPPGTGKSSL---IAAMANYLHFDVYDLELSS---VEGNKHLRKVL-IAT 277
RA RG LLFGPPG GK+ L +AA +N F++ L+S EG K +R + +A
Sbjct: 370 RAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVAR 429
Query: 278 E-NKSILVVGDIDC--CTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSSCGD 334
E SI+ + ++D C + +R ++ L+ F DG+ S+ GD
Sbjct: 430 ELQPSIIFIDEVDSLLCERREGEHDASRRLKTEF------------LIEF-DGVQSA-GD 475
Query: 335 ERII 338
+R++
Sbjct: 476 DRVL 479
>sp|Q05AS3|SPAST_XENTR Spastin OS=Xenopus tropicalis GN=spast PE=2 SV=1
Length = 603
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 61/124 (49%), Gaps = 24/124 (19%)
Query: 225 RAWKRGYLLFGPPGTGKSSL---IAAMANYLHFDVYDLELSS---VEGNKHLRKVL-IAT 277
RA RG LLFGPPG GK+ L +AA +N F++ L+S EG K +R + +A
Sbjct: 359 RAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFSVAR 418
Query: 278 E-NKSILVVGDIDC--CTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSSCGD 334
E SI+ + ++D C + +R ++ L+ F DG+ S GD
Sbjct: 419 ELQPSIIFIDEVDSLLCERREGEHDASRRLKTEF------------LIEF-DGVQSG-GD 464
Query: 335 ERII 338
+R++
Sbjct: 465 DRVL 468
>sp|Q5ZK92|SPAST_CHICK Spastin OS=Gallus gallus GN=SPAST PE=2 SV=1
Length = 613
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 62/124 (50%), Gaps = 24/124 (19%)
Query: 225 RAWKRGYLLFGPPGTGKSSL---IAAMANYLHFDVYDLELSS---VEGNKHLRKVL-IAT 277
RA RG LLFGPPG GK+ L +AA +N F++ L+S EG K +R + +A
Sbjct: 369 RAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVAR 428
Query: 278 E-NKSILVVGDIDC--CTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSSCGD 334
E SI+ + ++D C + +R ++ L+ F DG+ SS G+
Sbjct: 429 ELQPSIIFIDEVDSLLCERREGEHDASRRLKTEF------------LIEF-DGVQSS-GE 474
Query: 335 ERII 338
+RI+
Sbjct: 475 DRIL 478
>sp|Q6AZT2|SPAST_XENLA Spastin OS=Xenopus laevis GN=spast PE=2 SV=1
Length = 600
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 61/124 (49%), Gaps = 24/124 (19%)
Query: 225 RAWKRGYLLFGPPGTGKSSL---IAAMANYLHFDVYDLELSS---VEGNKHLRKVL-IAT 277
RA RG LLFGPPG GK+ L +AA +N F++ L+S EG K +R + +A
Sbjct: 356 RAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFSVAR 415
Query: 278 E-NKSILVVGDIDC--CTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSSCGD 334
E SI+ + ++D C + +R ++ L+ F DG+ S GD
Sbjct: 416 ELQPSIIFIDEVDSLLCERREGEHDASRRLKTEF------------LIEF-DGVQSG-GD 461
Query: 335 ERII 338
+R++
Sbjct: 462 DRVL 465
>sp|Q25544|PRS8_NAEFO 26S protease regulatory subunit 8 homolog OS=Naegleria fowleri PE=2
SV=1
Length = 414
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 33/142 (23%)
Query: 200 LDHPSTFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDL 259
+ HP F++L + A +G +++GPPGTGK+ L A+A+ H D +
Sbjct: 176 IKHPELFESLGI--------------AQPKGVIMYGPPGTGKTLLARAVAH--HTDCTFI 219
Query: 260 ELSSV--------EGNKHLRKVLIATENK--SILVVGDIDCCTELQDRSAQARTASPDWH 309
+S EG+K +R++ + SI+ + +ID RT
Sbjct: 220 RVSGSELVQKYIGEGSKMVRELFVMAREHAPSIIFMDEIDSI-------GSTRTEGGKGG 272
Query: 310 SPKRDQITLSGLLNFTDGLWSS 331
Q T+ LLN DG S+
Sbjct: 273 GDSEVQRTMLELLNQLDGFEST 294
>sp|Q6P4W8|PCH2_XENTR Pachytene checkpoint protein 2 homolog OS=Xenopus tropicalis
GN=trip13 PE=2 SV=1
Length = 432
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 14/66 (21%)
Query: 201 DHPSTFDTLAMDTDMKKMIMDDLERA--------------WKRGYLLFGPPGTGKSSLIA 246
D +D+L D+++K ++D +E A W R LL GPPGTGK+SL
Sbjct: 131 DFHGLWDSLIYDSEIKSRLLDYIETAMLFSDKNVDSNLISWNRVVLLHGPPGTGKTSLCK 190
Query: 247 AMANYL 252
A+A L
Sbjct: 191 ALAQKL 196
>sp|B2RYN7|SPAST_RAT Spastin OS=Rattus norvegicus GN=Spast PE=2 SV=1
Length = 581
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 61/124 (49%), Gaps = 24/124 (19%)
Query: 225 RAWKRGYLLFGPPGTGKSSL---IAAMANYLHFDVYDLELSS---VEGNKHLRKVL-IAT 277
RA RG LLFGPPG GK+ L +AA +N F++ L+S EG K +R + +A
Sbjct: 337 RAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVAR 396
Query: 278 E-NKSILVVGDIDC--CTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSSCGD 334
E SI+ + ++D C + +R ++ L+ F DG+ S GD
Sbjct: 397 ELQPSIIFIDEVDSLLCERREGEHDASRRLKTEF------------LIEF-DGV-QSAGD 442
Query: 335 ERII 338
+R++
Sbjct: 443 DRVL 446
>sp|P39955|SAP1_YEAST Protein SAP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SAP1 PE=1 SV=1
Length = 897
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG-----NKHLRKVLIATENK--- 280
RG LLFGPPGTGK+ L A+A H + + SS+ ++ L + L A K
Sbjct: 639 RGMLLFGPPGTGKTMLARAVATESHSTFFSISASSLTSKYLGESEKLVRALFAIAKKLSP 698
Query: 281 SILVVGDIDCC 291
SI+ V +ID
Sbjct: 699 SIIFVDEIDSI 709
>sp|Q9YBS5|RFCL_AERPE Replication factor C large subunit OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=rfcL PE=3 SV=2
Length = 479
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 14/100 (14%)
Query: 211 MDTDMKKMIMDDLERAW-------KRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSS 263
++ D K I+ +AW KR LL+GPPG GK+SL+ A+A+ + ++ +L S
Sbjct: 25 VNQDQAKKILVPWFKAWLEGRKPDKRAALLYGPPGVGKTSLVEAIASEFNLEMIELNASD 84
Query: 264 VEGNKHLRKVLIATENKS-------ILVVGDIDCCTELQD 296
+ +++ A K ++++ ++D +D
Sbjct: 85 YRRRSDIERIVGAASRKRSMFKRGVVILLDEVDGINPRED 124
>sp|A3MS27|RFCL_PYRCJ Replication factor C large subunit OS=Pyrobaculum calidifontis
(strain JCM 11548 / VA1) GN=rfcL PE=3 SV=1
Length = 421
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 31/46 (67%)
Query: 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKVL 274
R LL+GPPG GK++L+ A+A + +++ +L S V + +R+V+
Sbjct: 57 RAVLLWGPPGIGKTTLVHALAKEIGYELVELNASDVRTGERIRQVV 102
>sp|Q6M0E9|RFCL_METMP Replication factor C large subunit OS=Methanococcus maripaludis
(strain S2 / LL) GN=rfcL PE=3 SV=1
Length = 486
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 11/79 (13%)
Query: 232 LLFGPPGTGKSSLIAAMANYLHFDVYDLE---------LSSVEGNKHLRKVLIATENKSI 282
LL GPPG+GK++L A+AN FDV +L +S V G K L T +++
Sbjct: 43 LLAGPPGSGKTTLAYAIANDYAFDVIELNASDKRNKDVISQVVGTAATSKSL--TGRRTL 100
Query: 283 LVVGDIDCCTELQDRSAQA 301
+V+ ++D + DR A
Sbjct: 101 IVLDEVDGLSGNDDRGGVA 119
>sp|A8AC24|RFCL_IGNH4 Replication factor C large subunit OS=Ignicoccus hospitalis (strain
KIN4/I / DSM 18386 / JCM 14125) GN=rfcL PE=3 SV=1
Length = 476
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 228 KRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKVLIATENKS------ 281
KR LL+GPPG GK+SL+ A+ N + + ++ S + +V IA K
Sbjct: 43 KRAALLWGPPGVGKTSLVEAICNEFNLEKIEMNASDFRRKGDIERVAIAAATKKPLPPWK 102
Query: 282 --ILVVGDIDCCTELQDRSAQA 301
++++ ++D + D A A
Sbjct: 103 GRLILLDEVDGLSPRGDEGAVA 124
>sp|Q8ZYK3|RFCL_PYRAE Replication factor C large subunit OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=rfcL PE=3 SV=1
Length = 422
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 222 DLERAWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKVL 274
D E A + LL GPPG GK++L+ A+A + +++ +L S V LR+V+
Sbjct: 50 DKEVAEAKAILLAGPPGVGKTTLVHALAREIRYELIELNASDVRTADRLRQVI 102
>sp|O18413|PRS8_DROME 26S protease regulatory subunit 8 OS=Drosophila melanogaster
GN=Pros45 PE=1 SV=2
Length = 405
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 30/140 (21%)
Query: 200 LDHPSTFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDL 259
+ HP FD L + A +G LL+GPPGTGK+ L A+A++ +
Sbjct: 168 VKHPELFDALGI--------------AQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRV 213
Query: 260 ELSSV------EGNKHLRKVLIATENK--SILVVGDIDCCTELQDRSAQARTASPDWHSP 311
S + EG++ +R++ + SI+ + +ID S++ + S
Sbjct: 214 SGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIG-----SSRIESGSGGDSEV 268
Query: 312 KRDQITLSGLLNFTDGLWSS 331
+R T+ LLN DG ++
Sbjct: 269 QR---TMLELLNQLDGFEAT 285
>sp|A6VHR1|PAN_METM7 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=pan PE=3 SV=1
Length = 407
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 55/118 (46%), Gaps = 17/118 (14%)
Query: 229 RGYLLFGPPGTGKSSLIAAMA---NYLHFDVYDLELSSV---EGNKHLRKVLIATENKS- 281
+G LL+GPPGTGK+ L A+A N V EL EG K +R V + KS
Sbjct: 183 KGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKEKSP 242
Query: 282 -ILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSSCGDERII 338
I+ + +ID A RT S + Q TL LL DG + S GD +II
Sbjct: 243 CIIFIDEIDAV-------ASKRTESLTGGD-REVQRTLMQLLAEMDG-FDSRGDVKII 291
>sp|Q9ZPR1|CD48B_ARATH Cell division control protein 48 homolog B OS=Arabidopsis thaliana
GN=CDC48B PE=2 SV=1
Length = 603
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 14/93 (15%)
Query: 227 WKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSV------EGNKHLRKVL------ 274
W RG LL+GPPGTGK+SL+ A+ + L SV E K LR+
Sbjct: 55 WPRGLLLYGPPGTGKTSLVRAVVQECDAHLIVLSPHSVHRAHAGESEKVLREAFAEASSH 114
Query: 275 IATENKSILVVGDIDCCTELQD--RSAQARTAS 305
++ S++ + +ID +D R R AS
Sbjct: 115 AVSDKPSVIFIDEIDVLCPRRDARREQDVRIAS 147
>sp|A6LD25|FTSH_PARD8 ATP-dependent zinc metalloprotease FtsH OS=Parabacteroides
distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152)
GN=ftsH PE=3 SV=1
Length = 684
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 15/113 (13%)
Query: 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSS-VE-----GNKHLRKVLIATENKS- 281
+G LL GPPGTGK+ L A+A + + L S VE G +R + + KS
Sbjct: 230 KGALLVGPPGTGKTLLAKAVAGEANVPFFSLSGSDFVEMFVGVGASRVRDLFRQAKEKSP 289
Query: 282 -ILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSSCG 333
I+ + +ID +AR + + +S + TL+ LL DG S+ G
Sbjct: 290 CIVFIDEIDAV-------GRARGKNANMNSNDERENTLNQLLTEMDGFGSNSG 335
>sp|Q6LWR0|PAN_METMP Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain S2 / LL) GN=pan PE=3 SV=1
Length = 407
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 55/118 (46%), Gaps = 17/118 (14%)
Query: 229 RGYLLFGPPGTGKSSLIAAMA---NYLHFDVYDLELSSV---EGNKHLRKVLIATENKS- 281
+G LL+GPPGTGK+ L A+A N V EL EG K +R V + KS
Sbjct: 183 KGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKEKSP 242
Query: 282 -ILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSSCGDERII 338
I+ + +ID A RT S + Q TL LL DG + S GD +II
Sbjct: 243 CIIFIDEIDAV-------ASKRTESLTGGD-REVQRTLMQLLAEMDG-FDSRGDVKII 291
>sp|P54814|PRS8_MANSE 26S protease regulatory subunit 8 OS=Manduca sexta PE=2 SV=1
Length = 402
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 30/138 (21%)
Query: 202 HPSTFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLEL 261
HP FD L + A +G LL+GPPGTGK+ L A+A++ +
Sbjct: 167 HPELFDALGI--------------AQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 212
Query: 262 SSV------EGNKHLRKVLIATENK--SILVVGDIDCCTELQDRSAQARTASPDWHSPKR 313
S + EG++ +R++ + SI+ + +ID S++ + S +R
Sbjct: 213 SELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIG-----SSRIESGSGGDSEVQR 267
Query: 314 DQITLSGLLNFTDGLWSS 331
T+ LLN DG ++
Sbjct: 268 ---TMLELLNQLDGFEAT 282
>sp|O28303|PAN_ARCFU Proteasome-activating nucleotidase OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=pan PE=1 SV=1
Length = 398
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 17/118 (14%)
Query: 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSV------EGNKHLRKVLIATENK-- 280
+G LL+GPPGTGK+ L A+AN + S EG + +R+V + K
Sbjct: 176 KGVLLYGPPGTGKTLLAKAVANQTRATFIRVVGSEFVQKYIGEGARLVREVFQLAKEKAP 235
Query: 281 SILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSSCGDERII 338
SI+ + ++D AR + D + Q T+ LL DG + GD ++I
Sbjct: 236 SIIFIDELDAIA--------ARRTNSDTSGDREVQRTMMQLLAELDG-FDPRGDVKVI 284
>sp|O29072|RFCL_ARCFU Replication factor C large subunit OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rfcL PE=1 SV=1
Length = 479
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 202 HPSTFDTLAMDTDMKKMIMDDLERAWKRG---YLLFGPPGTGKSSLIAAMANYLHFDVYD 258
P T + + D + ++ ++WKRG LL GPPG GK+SL A+AN + ++ +
Sbjct: 8 RPKTLEEVVADKSIITRVIK-WAKSWKRGSKPLLLAGPPGVGKTSLALALANTMGWEAVE 66
Query: 259 LELS 262
L S
Sbjct: 67 LNAS 70
>sp|A9A916|PAN_METM6 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=pan PE=3 SV=1
Length = 407
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 55/118 (46%), Gaps = 17/118 (14%)
Query: 229 RGYLLFGPPGTGKSSLIAAMA---NYLHFDVYDLELSS---VEGNKHLRKVLIATENKS- 281
+G LL+GPPGTGK+ L A+A N V EL EG K +R V + KS
Sbjct: 183 KGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKEKSP 242
Query: 282 -ILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSSCGDERII 338
I+ + +ID A RT S + Q TL LL DG + S GD +II
Sbjct: 243 CIIFIDEIDAV-------ASKRTESLTGGD-REVQRTLMQLLAEMDG-FDSRGDVKII 291
>sp|A6UQT3|PAN_METVS Proteasome-activating nucleotidase OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=pan PE=3 SV=1
Length = 407
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 55/118 (46%), Gaps = 17/118 (14%)
Query: 229 RGYLLFGPPGTGKSSLIAAMA---NYLHFDVYDLELSS---VEGNKHLRKVLIATENKS- 281
+G LL+GPPGTGK+ L A+A N V EL EG K +R V + KS
Sbjct: 183 KGVLLYGPPGTGKTLLAKAVARETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKEKSP 242
Query: 282 -ILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSSCGDERII 338
I+ + +ID A RT S + Q TL LL DG + S GD +II
Sbjct: 243 CIIFIDEIDAV-------ASKRTESLTGGD-REVQRTLMQLLAEMDG-FDSRGDVKII 291
>sp|A4G0S4|PAN_METM5 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=pan PE=3 SV=1
Length = 407
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 55/118 (46%), Gaps = 17/118 (14%)
Query: 229 RGYLLFGPPGTGKSSLIAAMA---NYLHFDVYDLELSS---VEGNKHLRKVLIATENKS- 281
+G LL+GPPGTGK+ L A+A N V EL EG K +R V + KS
Sbjct: 183 KGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKEKSP 242
Query: 282 -ILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSSCGDERII 338
I+ + +ID A RT S + Q TL LL DG + S GD +II
Sbjct: 243 CIIFIDEIDAV-------ASKRTESLTGGD-REVQRTLMQLLAEMDG-FDSRGDVKII 291
>sp|O28972|Y1297_ARCFU Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=AF_1297 PE=3 SV=1
Length = 733
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 68/154 (44%), Gaps = 48/154 (31%)
Query: 200 LDHPSTFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYL--HF-DV 256
L HP F L ++ +G LL+GPPGTGK+ + A+AN + HF +
Sbjct: 202 LKHPELFQRLGIEP--------------PKGVLLYGPPGTGKTLIAKAVANEVDAHFIPI 247
Query: 257 YDLELSS---VEGNKHLRKVL-IATENK-SILVVGDIDCCTELQDRSAQARTASPDWHSP 311
E+ S E + LR++ A EN SI+ + +ID +P
Sbjct: 248 SGPEIMSKYYGESEQRLREIFEEAKENAPSIIFIDEIDSI------------------AP 289
Query: 312 KRDQIT-------LSGLLNFTDGLWSSCGDERII 338
KR+++T ++ LL DGL + GD +I
Sbjct: 290 KREEVTGEVERRVVAQLLALMDGL-EARGDVIVI 322
Score = 40.0 bits (92), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 49/108 (45%), Gaps = 18/108 (16%)
Query: 229 RGYLLFGPPGTGKSSLIAAMANYLH---FDVYDLELSS---VEGNKHLRKVLIATENKSI 282
RG LLFGPPGTGK+ L A+AN + V EL S E KH+R++ +
Sbjct: 490 RGILLFGPPGTGKTLLAKAVANESNANFISVKGPELLSKWVGESEKHVREMFRKARQVAP 549
Query: 283 LVV--GDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGL 328
V+ +ID A R D H +R +S LL DGL
Sbjct: 550 CVIFFDEIDSL-------APRRGGIGDSHVTER---VVSQLLTELDGL 587
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 122,696,511
Number of Sequences: 539616
Number of extensions: 5007113
Number of successful extensions: 21972
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 200
Number of HSP's that attempted gapping in prelim test: 21312
Number of HSP's gapped (non-prelim): 847
length of query: 338
length of database: 191,569,459
effective HSP length: 118
effective length of query: 220
effective length of database: 127,894,771
effective search space: 28136849620
effective search space used: 28136849620
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)