Query 035959
Match_columns 338
No_of_seqs 343 out of 2180
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 08:00:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035959.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035959hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0743 AAA+-type ATPase [Post 100.0 2.1E-77 4.6E-82 573.7 27.0 324 5-338 1-341 (457)
2 PF14363 AAA_assoc: Domain ass 100.0 1.7E-29 3.6E-34 200.6 12.0 97 28-125 1-98 (98)
3 COG1222 RPT1 ATP-dependent 26S 99.9 2.5E-22 5.5E-27 188.6 6.2 120 196-338 167-294 (406)
4 KOG0733 Nuclear AAA ATPase (VC 99.8 2.4E-19 5.2E-24 177.5 8.6 116 205-331 188-323 (802)
5 KOG0736 Peroxisome assembly fa 99.8 7.7E-19 1.7E-23 177.7 9.9 119 203-330 668-806 (953)
6 KOG0730 AAA+-type ATPase [Post 99.7 2E-18 4.3E-23 172.8 7.5 117 203-330 430-567 (693)
7 KOG0738 AAA+-type ATPase [Post 99.7 2.8E-18 6E-23 162.6 7.5 119 205-334 210-349 (491)
8 KOG0726 26S proteasome regulat 99.7 4.1E-18 8.9E-23 156.3 3.6 119 197-338 202-328 (440)
9 KOG0733 Nuclear AAA ATPase (VC 99.7 2E-17 4.2E-22 164.1 8.4 114 205-329 509-643 (802)
10 KOG0727 26S proteasome regulat 99.7 2.5E-17 5.3E-22 148.7 8.0 124 205-337 153-297 (408)
11 KOG0734 AAA+-type ATPase conta 99.7 4.4E-17 9.5E-22 159.5 9.4 119 204-333 301-439 (752)
12 KOG0652 26S proteasome regulat 99.7 7.2E-18 1.6E-22 152.8 3.2 159 151-331 138-308 (424)
13 COG1223 Predicted ATPase (AAA+ 99.7 3.8E-17 8.2E-22 148.0 7.3 122 202-333 116-254 (368)
14 KOG0728 26S proteasome regulat 99.7 2.3E-17 5.1E-22 148.7 5.9 113 197-331 164-284 (404)
15 KOG0731 AAA+-type ATPase conta 99.6 4.4E-16 9.5E-21 159.9 10.6 122 203-331 307-448 (774)
16 PLN00020 ribulose bisphosphate 99.6 5E-16 1.1E-20 148.2 8.9 93 226-328 146-251 (413)
17 CHL00195 ycf46 Ycf46; Provisio 99.6 2.6E-15 5.6E-20 150.5 11.0 115 203-327 224-356 (489)
18 KOG0735 AAA+-type ATPase [Post 99.6 2.6E-15 5.6E-20 151.2 9.4 123 197-330 655-800 (952)
19 KOG0729 26S proteasome regulat 99.6 1.1E-15 2.4E-20 139.0 6.1 119 196-337 193-319 (435)
20 KOG0739 AAA+-type ATPase [Post 99.6 2.4E-15 5.1E-20 138.7 7.7 114 205-330 131-265 (439)
21 PTZ00454 26S protease regulato 99.6 3.5E-15 7.7E-20 146.3 9.5 122 202-331 140-282 (398)
22 PF05496 RuvB_N: Holliday junc 99.6 8.7E-15 1.9E-19 131.4 10.6 94 200-293 17-115 (233)
23 TIGR01241 FtsH_fam ATP-depende 99.6 4.4E-15 9.4E-20 150.1 9.1 123 201-331 49-191 (495)
24 TIGR03689 pup_AAA proteasome A 99.6 6.2E-15 1.3E-19 147.9 9.7 120 202-331 177-331 (512)
25 COG0465 HflB ATP-dependent Zn 99.6 1E-14 2.3E-19 147.3 9.6 122 202-331 145-286 (596)
26 PRK03992 proteasome-activating 99.6 1.4E-14 3E-19 142.2 10.2 120 203-330 127-267 (389)
27 PTZ00361 26 proteosome regulat 99.5 1.7E-14 3.7E-19 142.8 7.9 123 201-331 177-320 (438)
28 TIGR01243 CDC48 AAA family ATP 99.5 3.1E-14 6.8E-19 150.2 10.2 117 204-330 450-587 (733)
29 CHL00176 ftsH cell division pr 99.5 3.7E-14 8.1E-19 146.3 10.1 123 201-331 177-319 (638)
30 COG0464 SpoVK ATPases of the A 99.5 5E-14 1.1E-18 142.4 10.6 118 203-331 238-376 (494)
31 KOG0651 26S proteasome regulat 99.5 4.1E-14 9E-19 131.1 7.2 112 197-330 149-268 (388)
32 KOG0737 AAA+-type ATPase [Post 99.5 5.4E-14 1.2E-18 133.2 7.2 122 205-338 90-233 (386)
33 KOG0744 AAA+-type ATPase [Post 99.5 5.9E-14 1.3E-18 130.7 5.2 120 205-331 140-295 (423)
34 PF00004 AAA: ATPase family as 99.4 9.2E-14 2E-18 114.4 5.7 90 231-331 1-99 (132)
35 COG2255 RuvB Holliday junction 99.4 2.9E-13 6.3E-18 124.4 8.7 93 201-293 20-117 (332)
36 TIGR01242 26Sp45 26S proteasom 99.4 3E-13 6.6E-18 131.6 8.8 121 202-330 117-258 (364)
37 CHL00206 ycf2 Ycf2; Provisiona 99.4 2.7E-13 5.8E-18 149.0 7.5 95 226-337 1628-1773(2281)
38 KOG0740 AAA+-type ATPase [Post 99.4 5.1E-13 1.1E-17 130.2 7.2 122 205-338 151-292 (428)
39 TIGR01243 CDC48 AAA family ATP 99.4 1.1E-12 2.3E-17 138.6 9.8 118 203-331 174-312 (733)
40 PRK10733 hflB ATP-dependent me 99.3 3.4E-12 7.5E-17 132.6 9.5 122 203-332 148-289 (644)
41 KOG0730 AAA+-type ATPase [Post 99.3 1.4E-12 3E-17 131.2 4.9 93 226-330 216-317 (693)
42 PRK00080 ruvB Holliday junctio 99.3 9.9E-12 2.2E-16 119.3 9.7 94 200-293 18-116 (328)
43 PRK04195 replication factor C 99.3 1.8E-11 4E-16 123.4 11.4 95 199-293 6-112 (482)
44 TIGR00635 ruvB Holliday juncti 99.3 1.5E-11 3.3E-16 116.4 9.4 89 205-293 2-95 (305)
45 KOG0742 AAA+-type ATPase [Post 99.3 8.8E-12 1.9E-16 119.4 7.5 158 153-322 299-476 (630)
46 COG2256 MGS1 ATPase related to 99.3 1.2E-11 2.6E-16 118.6 7.8 92 201-293 18-118 (436)
47 PRK07952 DNA replication prote 99.2 1.3E-11 2.8E-16 113.6 7.2 118 169-292 40-175 (244)
48 KOG0741 AAA+-type ATPase [Post 99.2 8.1E-12 1.7E-16 122.9 5.8 96 226-330 254-366 (744)
49 PLN03025 replication factor C 99.2 5.4E-11 1.2E-15 113.8 9.0 95 199-293 5-113 (319)
50 KOG0732 AAA+-type ATPase conta 99.2 3.6E-11 7.8E-16 127.2 8.2 124 203-338 261-410 (1080)
51 KOG0989 Replication factor C, 99.2 4.3E-11 9.2E-16 111.2 6.6 98 194-293 25-143 (346)
52 COG0466 Lon ATP-dependent Lon 99.2 8E-11 1.7E-15 119.8 9.1 84 210-293 326-431 (782)
53 PRK14962 DNA polymerase III su 99.2 8.9E-11 1.9E-15 117.7 9.4 94 200-293 7-131 (472)
54 KOG1969 DNA replication checkp 99.2 1.3E-10 2.8E-15 118.2 10.1 97 194-292 260-400 (877)
55 PRK13342 recombination factor 99.2 1.1E-10 2.4E-15 115.5 9.3 93 200-293 5-106 (413)
56 PRK06893 DNA replication initi 99.1 1.6E-10 3.4E-15 105.6 9.5 94 198-293 7-105 (229)
57 PRK12323 DNA polymerase III su 99.1 1.3E-10 2.8E-15 118.8 9.6 94 200-293 9-138 (700)
58 PRK14960 DNA polymerase III su 99.1 1.5E-10 3.2E-15 118.6 10.0 94 200-293 8-132 (702)
59 PHA02544 44 clamp loader, smal 99.1 3.3E-10 7.2E-15 107.8 11.5 98 192-292 8-113 (316)
60 PRK14956 DNA polymerase III su 99.1 1.6E-10 3.4E-15 115.1 8.9 94 200-293 11-135 (484)
61 PRK14958 DNA polymerase III su 99.1 2.2E-10 4.8E-15 115.9 10.0 94 200-293 9-133 (509)
62 PRK05342 clpX ATP-dependent pr 99.1 3E-10 6.4E-15 112.1 10.4 116 205-328 68-214 (412)
63 PRK07003 DNA polymerase III su 99.1 2E-10 4.3E-15 118.8 9.4 94 200-293 9-133 (830)
64 PRK08727 hypothetical protein; 99.1 4.2E-10 9.1E-15 103.0 10.5 94 198-293 10-107 (233)
65 PRK14964 DNA polymerase III su 99.1 3E-10 6.5E-15 113.9 10.1 94 200-293 6-130 (491)
66 TIGR02881 spore_V_K stage V sp 99.1 2.9E-10 6.2E-15 105.8 9.1 87 206-293 5-119 (261)
67 PRK14961 DNA polymerase III su 99.1 5.1E-10 1.1E-14 109.0 10.4 94 200-293 9-133 (363)
68 PF05673 DUF815: Protein of un 99.1 1E-09 2.2E-14 100.1 11.0 98 192-289 12-116 (249)
69 PRK06645 DNA polymerase III su 99.1 7E-10 1.5E-14 112.0 10.4 94 200-293 14-142 (507)
70 PRK12377 putative replication 99.0 7.5E-10 1.6E-14 102.2 9.3 89 204-292 71-176 (248)
71 PRK08181 transposase; Validate 99.0 4.8E-10 1E-14 104.6 7.8 67 227-293 105-181 (269)
72 PRK14969 DNA polymerase III su 99.0 1E-09 2.2E-14 111.7 10.4 94 200-293 9-133 (527)
73 TIGR02639 ClpA ATP-dependent C 99.0 5E-10 1.1E-14 118.3 8.5 92 202-293 177-288 (731)
74 PRK14949 DNA polymerase III su 99.0 8.3E-10 1.8E-14 116.2 9.6 94 200-293 9-133 (944)
75 PRK07994 DNA polymerase III su 99.0 7.8E-10 1.7E-14 114.1 9.1 94 200-293 9-133 (647)
76 TIGR00763 lon ATP-dependent pr 99.0 1.1E-09 2.3E-14 116.5 10.4 85 209-293 322-428 (775)
77 TIGR03420 DnaA_homol_Hda DnaA 99.0 7.5E-10 1.6E-14 100.1 7.9 94 198-293 6-104 (226)
78 PRK14951 DNA polymerase III su 99.0 8.9E-10 1.9E-14 113.3 9.3 94 200-293 9-138 (618)
79 TIGR02880 cbbX_cfxQ probable R 99.0 1E-09 2.2E-14 103.4 9.1 106 208-327 23-156 (284)
80 PRK08691 DNA polymerase III su 99.0 1.2E-09 2.6E-14 112.7 10.2 93 200-292 9-132 (709)
81 PRK08084 DNA replication initi 99.0 1.5E-09 3.2E-14 99.5 9.5 90 200-293 15-111 (235)
82 PRK14957 DNA polymerase III su 99.0 1.4E-09 3E-14 110.6 9.8 94 200-293 9-133 (546)
83 PRK06526 transposase; Provisio 99.0 5.6E-10 1.2E-14 103.5 6.4 121 161-293 37-173 (254)
84 PRK14970 DNA polymerase III su 99.0 1.7E-09 3.7E-14 105.3 10.2 94 200-293 10-122 (367)
85 PRK14952 DNA polymerase III su 99.0 1.7E-09 3.8E-14 110.7 10.6 94 200-293 6-132 (584)
86 PRK05563 DNA polymerase III su 99.0 1.8E-09 4E-14 110.5 10.7 94 200-293 9-133 (559)
87 PRK07764 DNA polymerase III su 99.0 1.5E-09 3.4E-14 115.0 10.3 95 199-293 7-134 (824)
88 PRK14963 DNA polymerase III su 99.0 1.9E-09 4.2E-14 109.0 10.0 93 200-292 7-129 (504)
89 PRK10865 protein disaggregatio 99.0 1.6E-09 3.4E-14 116.1 9.8 93 201-293 172-285 (857)
90 PRK14955 DNA polymerase III su 99.0 2.5E-09 5.5E-14 105.3 10.2 94 200-293 9-141 (397)
91 KOG2004 Mitochondrial ATP-depe 99.0 2.1E-09 4.7E-14 109.2 9.7 84 210-293 414-519 (906)
92 CHL00181 cbbX CbbX; Provisiona 99.0 2.8E-09 6.1E-14 100.6 9.8 107 207-327 23-157 (287)
93 TIGR00382 clpX endopeptidase C 99.0 3.8E-09 8.2E-14 104.0 11.0 118 205-330 74-224 (413)
94 PRK08939 primosomal protein Dn 99.0 1.4E-09 3E-14 103.5 7.4 89 203-291 123-229 (306)
95 PRK08903 DnaA regulatory inact 99.0 2.8E-09 6.1E-14 96.8 9.1 90 198-293 9-104 (227)
96 PRK12402 replication factor C 98.9 2.5E-09 5.3E-14 102.4 8.6 69 194-264 4-77 (337)
97 PRK05896 DNA polymerase III su 98.9 3.3E-09 7.2E-14 108.3 9.8 94 200-293 9-133 (605)
98 PRK05642 DNA replication initi 98.9 3.5E-09 7.6E-14 97.0 9.1 92 198-293 10-111 (234)
99 TIGR02397 dnaX_nterm DNA polym 98.9 5.6E-09 1.2E-13 100.8 10.8 94 200-293 7-131 (355)
100 PRK14959 DNA polymerase III su 98.9 3.7E-09 8E-14 108.4 9.8 94 200-293 9-133 (624)
101 PRK14965 DNA polymerase III su 98.9 3.7E-09 8E-14 108.8 9.9 94 200-293 9-133 (576)
102 TIGR03345 VI_ClpV1 type VI sec 98.9 3.1E-09 6.6E-14 113.7 9.1 93 201-293 181-294 (852)
103 cd00009 AAA The AAA+ (ATPases 98.9 5E-09 1.1E-13 86.2 8.5 79 213-291 4-96 (151)
104 TIGR02640 gas_vesic_GvpN gas v 98.9 6.1E-09 1.3E-13 97.0 10.0 38 228-265 21-58 (262)
105 KOG2028 ATPase related to the 98.9 3E-09 6.4E-14 101.1 7.3 93 201-293 132-236 (554)
106 PRK14950 DNA polymerase III su 98.9 6E-09 1.3E-13 107.5 10.3 94 200-293 9-134 (585)
107 PRK07133 DNA polymerase III su 98.9 5.5E-09 1.2E-13 108.7 9.9 94 200-293 11-132 (725)
108 PRK13341 recombination factor 98.9 3.1E-09 6.6E-14 111.5 8.1 93 200-293 21-123 (725)
109 CHL00095 clpC Clp protease ATP 98.9 2.2E-09 4.7E-14 114.8 7.1 89 205-293 177-285 (821)
110 PRK14954 DNA polymerase III su 98.9 7.3E-09 1.6E-13 106.9 10.3 94 200-293 9-141 (620)
111 PRK06647 DNA polymerase III su 98.9 7.7E-09 1.7E-13 105.9 10.4 94 200-293 9-133 (563)
112 COG1484 DnaC DNA replication p 98.9 5E-09 1.1E-13 97.1 8.2 86 208-293 80-181 (254)
113 TIGR03346 chaperone_ClpB ATP-d 98.9 5.1E-09 1.1E-13 112.4 9.2 92 202-293 168-280 (852)
114 PRK14948 DNA polymerase III su 98.9 1.1E-08 2.4E-13 105.9 10.8 94 200-293 9-135 (620)
115 PRK08116 hypothetical protein; 98.9 7.1E-09 1.5E-13 96.9 8.3 62 229-290 115-189 (268)
116 PF00308 Bac_DnaA: Bacterial d 98.9 4.1E-09 8.8E-14 95.7 6.5 91 203-293 4-111 (219)
117 PRK00440 rfc replication facto 98.9 1.2E-08 2.6E-13 96.8 9.9 99 193-293 5-116 (319)
118 PRK09111 DNA polymerase III su 98.8 1E-08 2.2E-13 105.5 9.9 94 200-293 17-146 (598)
119 PF07728 AAA_5: AAA domain (dy 98.8 1.3E-09 2.8E-14 91.3 2.6 64 230-293 1-79 (139)
120 KOG0991 Replication factor C, 98.8 2.9E-09 6.3E-14 95.8 5.0 98 194-293 16-127 (333)
121 PRK14953 DNA polymerase III su 98.8 1.2E-08 2.6E-13 102.9 10.0 94 200-293 9-133 (486)
122 PRK08451 DNA polymerase III su 98.8 1.2E-08 2.7E-13 103.3 10.2 94 200-293 7-131 (535)
123 PRK06305 DNA polymerase III su 98.8 1.2E-08 2.7E-13 102.0 9.8 94 200-293 10-135 (451)
124 PF01695 IstB_IS21: IstB-like 98.8 2.3E-09 5.1E-14 94.2 3.7 65 228-292 47-121 (178)
125 PRK00149 dnaA chromosomal repl 98.8 8.4E-09 1.8E-13 103.2 7.6 95 199-293 114-225 (450)
126 TIGR00362 DnaA chromosomal rep 98.8 1.1E-08 2.4E-13 101.0 8.0 94 200-293 103-213 (405)
127 PRK14971 DNA polymerase III su 98.8 2.2E-08 4.9E-13 103.5 10.4 94 200-293 10-135 (614)
128 PRK10787 DNA-binding ATP-depen 98.8 2.3E-08 5.1E-13 106.0 10.5 85 209-293 324-430 (784)
129 PF07724 AAA_2: AAA domain (Cd 98.8 4.4E-09 9.4E-14 91.9 4.1 89 229-328 4-106 (171)
130 PRK11034 clpA ATP-dependent Cl 98.8 1.8E-08 4E-13 106.2 9.4 99 209-329 460-586 (758)
131 COG2607 Predicted ATPase (AAA+ 98.8 2.2E-08 4.8E-13 90.5 8.5 97 193-289 46-149 (287)
132 PRK14086 dnaA chromosomal repl 98.8 1.4E-08 3E-13 103.9 7.9 94 200-293 281-391 (617)
133 PRK07940 DNA polymerase III su 98.8 2.9E-08 6.3E-13 97.5 9.6 89 205-293 3-131 (394)
134 PRK09183 transposase/IS protei 98.8 2.6E-08 5.5E-13 92.7 8.3 66 228-293 102-178 (259)
135 PRK14088 dnaA chromosomal repl 98.8 2.1E-08 4.5E-13 100.1 8.2 95 199-293 97-208 (440)
136 PRK11034 clpA ATP-dependent Cl 98.7 1.3E-08 2.8E-13 107.3 6.6 89 205-293 184-292 (758)
137 TIGR01650 PD_CobS cobaltochela 98.7 2.9E-08 6.3E-13 94.6 8.0 84 208-293 46-148 (327)
138 COG1219 ClpX ATP-dependent pro 98.7 4.7E-08 1E-12 91.6 9.1 66 228-293 97-176 (408)
139 TIGR02639 ClpA ATP-dependent C 98.7 4.3E-08 9.4E-13 103.7 9.7 85 208-293 455-567 (731)
140 TIGR02902 spore_lonB ATP-depen 98.7 3.7E-08 8E-13 100.5 8.9 64 200-263 58-131 (531)
141 PHA02244 ATPase-like protein 98.7 6.9E-08 1.5E-12 93.2 10.0 66 228-293 119-194 (383)
142 PRK12422 chromosomal replicati 98.7 4E-08 8.6E-13 98.1 8.7 94 200-293 104-216 (445)
143 PRK06620 hypothetical protein; 98.7 3E-08 6.6E-13 89.7 7.1 82 200-291 9-97 (214)
144 PRK14087 dnaA chromosomal repl 98.7 4.4E-08 9.6E-13 98.0 8.7 91 203-293 111-220 (450)
145 PF00158 Sigma54_activat: Sigm 98.7 7.7E-08 1.7E-12 83.8 8.5 83 210-293 2-107 (168)
146 COG2812 DnaX DNA polymerase II 98.7 2.4E-08 5.3E-13 100.3 6.0 94 200-293 9-133 (515)
147 PF07726 AAA_3: ATPase family 98.7 1.1E-08 2.4E-13 84.5 2.8 75 230-326 1-87 (131)
148 smart00382 AAA ATPases associa 98.7 3.9E-08 8.5E-13 79.9 6.0 66 228-293 2-92 (148)
149 TIGR00390 hslU ATP-dependent p 98.6 8.1E-08 1.8E-12 94.1 8.3 37 228-264 47-83 (441)
150 PRK05201 hslU ATP-dependent pr 98.6 7.2E-08 1.6E-12 94.5 7.9 57 209-265 17-87 (443)
151 PRK06835 DNA replication prote 98.6 1E-07 2.2E-12 91.6 8.8 65 228-292 183-259 (329)
152 PRK06921 hypothetical protein; 98.6 7.3E-08 1.6E-12 90.0 7.4 63 228-290 117-188 (266)
153 TIGR02928 orc1/cdc6 family rep 98.6 1.4E-07 3E-12 91.5 9.5 86 207-292 15-142 (365)
154 PRK00411 cdc6 cell division co 98.6 2.7E-07 5.9E-12 90.4 11.3 86 207-292 30-151 (394)
155 KOG0745 Putative ATP-dependent 98.6 1.5E-07 3.2E-12 91.4 9.0 66 228-293 226-305 (564)
156 KOG0735 AAA+-type ATPase [Post 98.6 1.4E-07 3E-12 96.2 8.9 87 207-293 408-508 (952)
157 PF08740 BCS1_N: BCS1 N termin 98.6 6.1E-06 1.3E-10 72.8 17.8 136 52-209 27-187 (187)
158 TIGR02903 spore_lon_C ATP-depe 98.6 2.3E-07 4.9E-12 96.3 9.8 64 201-264 148-221 (615)
159 COG0714 MoxR-like ATPases [Gen 98.5 3.4E-07 7.4E-12 88.0 9.1 95 209-327 26-138 (329)
160 PRK07471 DNA polymerase III su 98.5 7E-07 1.5E-11 87.1 10.8 53 200-252 12-65 (365)
161 TIGR03345 VI_ClpV1 type VI sec 98.5 3.7E-07 7.9E-12 97.9 9.5 86 207-293 566-682 (852)
162 PRK13407 bchI magnesium chelat 98.5 3.3E-07 7.2E-12 88.1 7.9 52 201-252 2-53 (334)
163 COG0542 clpA ATP-binding subun 98.5 2.5E-07 5.4E-12 96.6 7.5 97 208-326 492-618 (786)
164 PRK09087 hypothetical protein; 98.5 3E-07 6.4E-12 83.9 6.9 85 199-292 13-100 (226)
165 TIGR00602 rad24 checkpoint pro 98.5 1.6E-07 3.5E-12 97.0 5.3 63 192-256 71-138 (637)
166 PRK09112 DNA polymerase III su 98.5 1.2E-06 2.5E-11 85.1 10.7 54 200-253 16-70 (351)
167 CHL00095 clpC Clp protease ATP 98.4 5.6E-07 1.2E-11 96.5 8.9 86 207-293 509-625 (821)
168 TIGR03346 chaperone_ClpB ATP-d 98.4 8.4E-07 1.8E-11 95.4 10.1 87 207-293 565-681 (852)
169 PRK10820 DNA-binding transcrip 98.4 1.1E-06 2.4E-11 89.6 10.4 91 202-293 199-312 (520)
170 PRK10865 protein disaggregatio 98.4 7.5E-07 1.6E-11 95.7 9.3 88 206-293 567-684 (857)
171 TIGR01817 nifA Nif-specific re 98.4 1E-06 2.2E-11 90.1 9.8 89 204-293 193-304 (534)
172 PRK11331 5-methylcytosine-spec 98.4 8E-07 1.7E-11 88.0 8.5 86 206-293 174-286 (459)
173 COG0470 HolB ATPase involved i 98.4 8.6E-07 1.9E-11 84.1 8.4 84 210-293 4-123 (325)
174 PRK11608 pspF phage shock prot 98.4 1.5E-06 3.2E-11 83.6 9.8 88 205-293 4-114 (326)
175 PHA00729 NTP-binding motif con 98.4 6.8E-07 1.5E-11 81.1 6.8 37 218-254 7-43 (226)
176 COG0542 clpA ATP-binding subun 98.4 7.9E-07 1.7E-11 93.0 7.9 91 205-295 168-278 (786)
177 TIGR02974 phageshock_pspF psp 98.4 2.2E-06 4.7E-11 82.6 10.1 83 210-293 2-107 (329)
178 CHL00081 chlI Mg-protoporyphyr 98.4 4.9E-07 1.1E-11 87.3 5.4 50 204-253 14-63 (350)
179 PRK15424 propionate catabolism 98.3 2.1E-06 4.5E-11 87.6 9.6 89 204-293 216-336 (538)
180 PRK05564 DNA polymerase III su 98.3 3.4E-06 7.3E-11 80.5 10.2 89 205-293 2-107 (313)
181 TIGR00678 holB DNA polymerase 98.3 2.8E-06 6E-11 74.9 8.9 66 228-293 14-110 (188)
182 PF14532 Sigma54_activ_2: Sigm 98.3 8E-07 1.7E-11 74.5 5.0 75 213-293 4-83 (138)
183 PF03215 Rad17: Rad17 cell cyc 98.3 1.4E-06 3E-11 88.5 6.9 67 191-259 5-76 (519)
184 smart00763 AAA_PrkA PrkA AAA d 98.3 2.6E-06 5.6E-11 82.3 8.3 60 202-261 45-118 (361)
185 PRK15429 formate hydrogenlyase 98.3 2.9E-06 6.2E-11 89.4 9.4 89 204-293 373-484 (686)
186 TIGR02442 Cob-chelat-sub cobal 98.3 2.4E-06 5.2E-11 89.1 8.6 48 205-252 2-49 (633)
187 PRK11388 DNA-binding transcrip 98.3 3.2E-06 6.9E-11 88.3 9.5 88 205-293 323-430 (638)
188 PF12774 AAA_6: Hydrolytic ATP 98.3 4.2E-06 9E-11 76.6 9.1 66 228-293 32-98 (231)
189 PF00910 RNA_helicase: RNA hel 98.3 9E-07 2E-11 71.1 4.2 63 231-293 1-63 (107)
190 PRK13531 regulatory ATPase Rav 98.3 2E-06 4.2E-11 86.0 7.2 81 228-330 39-137 (498)
191 PF13401 AAA_22: AAA domain; P 98.3 7.9E-07 1.7E-11 73.0 3.7 37 229-265 5-49 (131)
192 PF01078 Mg_chelatase: Magnesi 98.2 1.8E-06 3.9E-11 77.2 6.2 46 205-252 1-46 (206)
193 COG1474 CDC6 Cdc6-related prot 98.2 3.8E-06 8.3E-11 81.9 8.6 85 209-293 19-137 (366)
194 TIGR02030 BchI-ChlI magnesium 98.2 2.9E-06 6.3E-11 81.8 7.6 48 205-252 2-49 (337)
195 COG0593 DnaA ATPase involved i 98.2 3.7E-06 8E-11 82.5 7.8 94 199-293 79-189 (408)
196 PF13173 AAA_14: AAA domain 98.2 2.5E-06 5.3E-11 70.6 5.7 65 229-293 3-75 (128)
197 TIGR02329 propionate_PrpR prop 98.2 5.1E-06 1.1E-10 84.6 9.0 91 202-293 207-321 (526)
198 PTZ00112 origin recognition co 98.2 7.2E-06 1.6E-10 86.4 9.3 86 208-293 756-883 (1164)
199 PRK05022 anaerobic nitric oxid 98.2 8.9E-06 1.9E-10 82.8 9.8 88 205-293 185-295 (509)
200 PF13177 DNA_pol3_delta2: DNA 98.1 2.6E-05 5.7E-10 67.4 10.8 82 212-293 2-116 (162)
201 COG1221 PspF Transcriptional r 98.1 8.2E-06 1.8E-10 79.9 8.0 90 204-293 75-187 (403)
202 KOG0736 Peroxisome assembly fa 98.1 5.6E-06 1.2E-10 85.5 6.6 64 230-293 433-504 (953)
203 PRK08058 DNA polymerase III su 98.1 1.2E-05 2.7E-10 77.3 8.7 89 205-293 3-124 (329)
204 PHA02624 large T antigen; Prov 98.0 2.5E-05 5.3E-10 79.8 9.5 88 226-328 429-516 (647)
205 KOG0741 AAA+-type ATPase [Post 98.0 8.6E-06 1.9E-10 81.1 5.4 65 229-293 539-612 (744)
206 KOG0990 Replication factor C, 98.0 3.3E-06 7.2E-11 79.4 2.2 99 193-293 29-145 (360)
207 PRK07399 DNA polymerase III su 98.0 4.3E-05 9.4E-10 73.1 9.6 48 205-252 2-50 (314)
208 PF12775 AAA_7: P-loop contain 97.9 1.6E-05 3.5E-10 74.5 6.2 67 227-293 32-114 (272)
209 PRK14722 flhF flagellar biosyn 97.9 9.2E-05 2E-09 72.3 11.0 63 229-291 138-227 (374)
210 COG0464 SpoVK ATPases of the A 97.9 1.7E-05 3.7E-10 80.4 6.2 90 228-329 18-115 (494)
211 PF06068 TIP49: TIP49 C-termin 97.9 2.8E-05 6.1E-10 75.0 7.0 72 206-277 23-106 (398)
212 PF13207 AAA_17: AAA domain; P 97.9 1.1E-05 2.3E-10 65.5 3.3 31 231-261 2-32 (121)
213 PRK05707 DNA polymerase III su 97.9 4.7E-05 1E-09 73.3 8.1 66 228-293 22-120 (328)
214 TIGR03015 pepcterm_ATPase puta 97.8 7.6E-05 1.6E-09 69.1 8.8 43 211-253 23-68 (269)
215 PRK10923 glnG nitrogen regulat 97.8 7.5E-05 1.6E-09 75.0 9.5 87 206-293 137-246 (469)
216 PHA02774 E1; Provisional 97.8 4.6E-05 9.9E-10 77.5 7.6 63 219-288 424-488 (613)
217 PF01637 Arch_ATPase: Archaeal 97.8 3.4E-05 7.4E-10 69.0 5.8 43 211-253 3-45 (234)
218 cd01120 RecA-like_NTPases RecA 97.8 6.3E-05 1.4E-09 63.2 6.5 63 231-293 2-99 (165)
219 COG1224 TIP49 DNA helicase TIP 97.7 5.1E-05 1.1E-09 72.5 6.1 71 207-277 39-121 (450)
220 PRK15455 PrkA family serine pr 97.7 5.3E-05 1.2E-09 77.1 6.4 61 201-261 70-137 (644)
221 PRK08118 topology modulation p 97.7 6.2E-05 1.3E-09 65.4 5.8 32 230-261 3-34 (167)
222 COG3829 RocR Transcriptional r 97.7 0.00013 2.9E-09 73.2 8.7 92 200-292 238-353 (560)
223 PF05621 TniB: Bacterial TniB 97.7 0.00019 4.1E-09 67.7 9.2 65 229-293 62-159 (302)
224 PF13604 AAA_30: AAA domain; P 97.7 0.0003 6.5E-09 62.7 10.0 75 219-293 9-107 (196)
225 PRK00131 aroK shikimate kinase 97.7 3.7E-05 8E-10 66.1 3.9 33 228-260 4-36 (175)
226 KOG1970 Checkpoint RAD17-RFC c 97.7 4.8E-05 1.1E-09 76.2 5.2 68 191-260 68-142 (634)
227 PRK11361 acetoacetate metaboli 97.7 0.00018 3.8E-09 71.9 9.0 85 208-293 144-251 (457)
228 TIGR02915 PEP_resp_reg putativ 97.7 0.00024 5.3E-09 70.8 9.8 86 207-293 139-247 (445)
229 TIGR02031 BchD-ChlD magnesium 97.6 9.9E-05 2.1E-09 76.4 6.9 78 216-293 4-98 (589)
230 PF05729 NACHT: NACHT domain 97.6 0.00012 2.7E-09 61.9 6.2 65 229-293 1-95 (166)
231 smart00350 MCM minichromosome 97.6 7.5E-05 1.6E-09 76.1 5.6 84 209-293 205-314 (509)
232 PF03969 AFG1_ATPase: AFG1-lik 97.6 7.5E-05 1.6E-09 72.7 5.2 65 227-291 61-139 (362)
233 KOG1051 Chaperone HSP104 and r 97.6 0.00028 6.1E-09 75.2 9.7 85 209-293 564-674 (898)
234 TIGR02688 conserved hypothetic 97.6 6.2E-05 1.3E-09 74.1 4.5 65 228-293 209-274 (449)
235 TIGR01618 phage_P_loop phage n 97.6 4.2E-05 9.2E-10 69.4 3.1 63 229-293 13-95 (220)
236 TIGR03499 FlhF flagellar biosy 97.6 0.00044 9.5E-09 65.2 9.8 59 230-288 196-281 (282)
237 PRK08699 DNA polymerase III su 97.6 0.00027 5.8E-09 68.0 8.3 66 228-293 21-127 (325)
238 PF00931 NB-ARC: NB-ARC domain 97.5 0.00022 4.8E-09 66.5 7.1 79 214-292 3-114 (287)
239 PRK13947 shikimate kinase; Pro 97.5 9.3E-05 2E-09 63.8 4.0 32 230-261 3-34 (171)
240 PRK03839 putative kinase; Prov 97.5 8.4E-05 1.8E-09 64.9 3.7 30 231-260 3-32 (180)
241 cd00464 SK Shikimate kinase (S 97.5 0.00011 2.3E-09 62.1 4.0 31 230-260 1-31 (154)
242 PRK15115 response regulator Gl 97.5 0.00045 9.7E-09 68.9 9.0 84 209-293 136-242 (444)
243 COG4650 RtcR Sigma54-dependent 97.5 0.00065 1.4E-08 63.7 9.3 77 217-293 194-296 (531)
244 PRK06871 DNA polymerase III su 97.5 0.00071 1.5E-08 65.0 9.8 80 214-293 9-121 (325)
245 PRK07993 DNA polymerase III su 97.5 0.00062 1.3E-08 65.7 9.4 80 214-293 9-122 (334)
246 PF13671 AAA_33: AAA domain; P 97.4 6.2E-05 1.3E-09 62.7 2.0 27 231-257 2-28 (143)
247 PF13086 AAA_11: AAA domain; P 97.4 0.00013 2.7E-09 65.3 4.1 24 229-252 17-41 (236)
248 PF13191 AAA_16: AAA ATPase do 97.4 0.00011 2.3E-09 63.7 3.4 56 209-264 2-63 (185)
249 PF06309 Torsin: Torsin; Inte 97.4 0.00022 4.8E-09 58.9 5.0 45 208-252 26-77 (127)
250 PRK06964 DNA polymerase III su 97.4 0.00077 1.7E-08 65.2 9.6 37 215-252 9-45 (342)
251 PF00437 T2SE: Type II/IV secr 97.4 0.00036 7.8E-09 65.0 7.1 89 203-291 100-209 (270)
252 PRK00625 shikimate kinase; Pro 97.4 0.00013 2.8E-09 63.9 3.8 32 230-261 2-33 (173)
253 TIGR00368 Mg chelatase-related 97.4 0.00021 4.5E-09 72.5 5.8 47 204-252 189-235 (499)
254 COG5271 MDN1 AAA ATPase contai 97.4 0.00031 6.7E-09 77.9 7.2 65 228-292 1543-1624(4600)
255 TIGR01818 ntrC nitrogen regula 97.4 0.00066 1.4E-08 68.0 9.3 85 208-293 135-242 (463)
256 PRK05800 cobU adenosylcobinami 97.4 0.00031 6.8E-09 61.2 6.1 64 230-293 3-90 (170)
257 PRK07261 topology modulation p 97.4 0.00027 5.9E-09 61.5 5.4 31 231-261 3-33 (171)
258 PRK13949 shikimate kinase; Pro 97.4 0.00015 3.3E-09 63.0 3.6 33 229-261 2-34 (169)
259 KOG3347 Predicted nucleotide k 97.3 0.0002 4.3E-09 60.7 3.7 32 228-259 7-38 (176)
260 COG1618 Predicted nucleotide k 97.3 0.0004 8.6E-09 59.7 5.5 23 230-252 7-29 (179)
261 PRK04132 replication factor C 97.3 0.0004 8.6E-09 74.2 6.8 62 232-293 568-644 (846)
262 PRK06090 DNA polymerase III su 97.3 0.0014 3E-08 62.9 9.8 80 214-293 10-122 (319)
263 KOG2170 ATPase of the AAA+ sup 97.3 0.00035 7.6E-09 65.5 5.5 86 208-293 83-192 (344)
264 PRK08769 DNA polymerase III su 97.3 0.0012 2.6E-08 63.3 9.3 80 214-293 11-127 (319)
265 TIGR02237 recomb_radB DNA repa 97.3 0.00067 1.5E-08 60.5 7.1 35 229-263 13-50 (209)
266 PRK12723 flagellar biosynthesi 97.3 0.0013 2.8E-08 64.7 9.5 65 228-292 174-267 (388)
267 COG1855 ATPase (PilT family) [ 97.3 0.0003 6.6E-09 69.1 4.9 44 205-253 245-288 (604)
268 TIGR01359 UMP_CMP_kin_fam UMP- 97.3 0.00023 5E-09 62.0 3.8 29 231-259 2-30 (183)
269 PRK06217 hypothetical protein; 97.3 0.00024 5.2E-09 62.3 3.9 31 230-260 3-33 (183)
270 COG0703 AroK Shikimate kinase 97.3 0.0002 4.3E-09 62.3 3.2 33 229-261 3-35 (172)
271 PRK13765 ATP-dependent proteas 97.3 0.00063 1.4E-08 70.8 7.3 49 203-253 27-75 (637)
272 PRK13764 ATPase; Provisional 97.3 0.00077 1.7E-08 69.6 7.8 83 203-291 237-336 (602)
273 cd02021 GntK Gluconate kinase 97.3 0.00025 5.4E-09 59.8 3.6 29 231-259 2-30 (150)
274 cd01128 rho_factor Transcripti 97.3 0.0011 2.3E-08 61.5 7.9 26 229-254 17-42 (249)
275 PRK14532 adenylate kinase; Pro 97.2 0.00027 5.8E-09 62.1 3.7 30 230-259 2-31 (188)
276 TIGR01313 therm_gnt_kin carboh 97.2 0.00026 5.6E-09 60.7 3.5 29 231-259 1-29 (163)
277 COG2204 AtoC Response regulato 97.2 0.0011 2.4E-08 66.2 8.3 87 205-292 139-248 (464)
278 PRK13948 shikimate kinase; Pro 97.2 0.00031 6.8E-09 61.9 4.0 34 228-261 10-43 (182)
279 TIGR00764 lon_rel lon-related 97.2 0.00078 1.7E-08 70.1 7.5 50 204-255 15-64 (608)
280 cd02020 CMPK Cytidine monophos 97.2 0.0003 6.6E-09 58.6 3.7 30 231-260 2-31 (147)
281 KOG1514 Origin recognition com 97.2 0.0015 3.3E-08 67.3 9.3 64 230-293 424-522 (767)
282 PRK14531 adenylate kinase; Pro 97.2 0.00033 7.1E-09 61.5 4.0 31 229-259 3-33 (183)
283 PRK05917 DNA polymerase III su 97.2 0.0023 5.1E-08 60.4 9.8 80 214-293 4-109 (290)
284 PRK13946 shikimate kinase; Pro 97.2 0.00029 6.4E-09 61.9 3.5 34 228-261 10-43 (184)
285 cd01129 PulE-GspE PulE/GspE Th 97.2 0.0017 3.7E-08 60.6 8.8 88 203-291 56-161 (264)
286 COG1239 ChlI Mg-chelatase subu 97.2 0.0014 3.1E-08 64.1 8.4 50 204-253 14-63 (423)
287 PF13245 AAA_19: Part of AAA d 97.2 0.00059 1.3E-08 51.4 4.5 33 230-262 12-51 (76)
288 cd01428 ADK Adenylate kinase ( 97.2 0.00034 7.3E-09 61.4 3.7 29 231-259 2-30 (194)
289 cd03283 ABC_MutS-like MutS-lik 97.2 0.0013 2.9E-08 58.7 7.6 65 229-293 26-119 (199)
290 PF08298 AAA_PrkA: PrkA AAA do 97.2 0.0012 2.7E-08 63.5 7.8 61 205-265 58-126 (358)
291 COG0606 Predicted ATPase with 97.2 0.00031 6.8E-09 69.7 3.7 48 203-252 175-222 (490)
292 cd00046 DEXDc DEAD-like helica 97.2 0.00067 1.4E-08 54.7 5.1 24 229-252 1-24 (144)
293 COG3283 TyrR Transcriptional r 97.2 0.0024 5.2E-08 61.4 9.4 99 195-293 192-307 (511)
294 PRK05057 aroK shikimate kinase 97.2 0.0004 8.7E-09 60.5 3.9 33 229-261 5-37 (172)
295 PRK09361 radB DNA repair and r 97.2 0.0011 2.4E-08 59.9 7.0 33 230-262 25-60 (225)
296 PRK03731 aroL shikimate kinase 97.2 0.00044 9.5E-09 59.7 4.1 32 229-260 3-34 (171)
297 cd00544 CobU Adenosylcobinamid 97.1 0.0015 3.4E-08 56.8 7.5 63 231-293 2-87 (169)
298 TIGR00150 HI0065_YjeE ATPase, 97.1 0.0034 7.3E-08 52.5 9.0 26 229-254 23-48 (133)
299 PRK06547 hypothetical protein; 97.1 0.00065 1.4E-08 59.4 4.9 33 228-260 15-47 (172)
300 PRK08154 anaerobic benzoate ca 97.1 0.00075 1.6E-08 64.4 5.6 49 212-260 109-165 (309)
301 PRK06762 hypothetical protein; 97.1 0.00055 1.2E-08 58.8 4.2 33 229-261 3-35 (166)
302 PTZ00111 DNA replication licen 97.1 0.00072 1.6E-08 72.3 5.5 64 230-293 494-571 (915)
303 TIGR02782 TrbB_P P-type conjug 97.1 0.002 4.3E-08 61.3 8.0 64 227-290 131-215 (299)
304 PRK14530 adenylate kinase; Pro 97.1 0.00056 1.2E-08 61.6 4.0 29 229-257 4-32 (215)
305 KOG1968 Replication factor C, 97.1 0.00045 9.7E-09 73.9 3.8 98 200-298 313-446 (871)
306 TIGR01360 aden_kin_iso1 adenyl 97.0 0.00062 1.3E-08 59.3 4.0 31 229-259 4-34 (188)
307 TIGR02525 plasmid_TraJ plasmid 97.0 0.0035 7.6E-08 61.4 9.4 43 205-252 131-173 (372)
308 PF01745 IPT: Isopentenyl tran 97.0 0.00067 1.5E-08 60.9 3.8 34 230-263 3-36 (233)
309 KOG2035 Replication factor C, 97.0 0.00099 2.2E-08 62.0 5.0 124 200-338 6-171 (351)
310 PRK11823 DNA repair protein Ra 97.0 0.0015 3.2E-08 65.6 6.7 64 230-293 82-170 (446)
311 PF14516 AAA_35: AAA-like doma 97.0 0.0032 7E-08 60.7 8.8 55 210-265 14-71 (331)
312 PRK02496 adk adenylate kinase; 97.0 0.00065 1.4E-08 59.5 3.6 29 231-259 4-32 (184)
313 PRK14528 adenylate kinase; Pro 97.0 0.00075 1.6E-08 59.6 3.8 29 230-258 3-31 (186)
314 PRK05703 flhF flagellar biosyn 97.0 0.004 8.6E-08 62.1 9.4 62 229-290 222-310 (424)
315 KOG1942 DNA helicase, TBP-inte 97.0 0.00073 1.6E-08 63.3 3.8 59 208-266 39-104 (456)
316 COG3604 FhlA Transcriptional r 97.0 0.0022 4.7E-08 64.0 7.3 90 204-293 220-331 (550)
317 PRK12727 flagellar biosynthesi 96.9 0.0042 9.1E-08 63.1 9.4 63 229-291 351-440 (559)
318 COG3854 SpoIIIAA ncharacterize 96.9 0.0034 7.5E-08 57.1 7.9 34 219-252 128-161 (308)
319 TIGR01420 pilT_fam pilus retra 96.9 0.0033 7.1E-08 60.9 8.4 82 203-289 102-205 (343)
320 COG1102 Cmk Cytidylate kinase 96.9 0.0008 1.7E-08 57.8 3.6 28 231-258 3-30 (179)
321 PF13479 AAA_24: AAA domain 96.9 0.00042 9.2E-09 62.5 1.9 60 230-292 5-81 (213)
322 COG2804 PulE Type II secretory 96.9 0.0027 5.8E-08 63.7 7.7 86 204-291 235-339 (500)
323 PRK10365 transcriptional regul 96.9 0.0035 7.6E-08 62.2 8.7 84 209-293 141-247 (441)
324 cd01124 KaiC KaiC is a circadi 96.9 0.0012 2.6E-08 57.4 4.7 32 231-262 2-36 (187)
325 PRK04296 thymidine kinase; Pro 96.9 0.0029 6.3E-08 56.0 7.2 29 231-259 5-36 (190)
326 PLN03210 Resistant to P. syrin 96.9 0.0025 5.3E-08 71.2 8.3 59 195-253 172-232 (1153)
327 TIGR03574 selen_PSTK L-seryl-t 96.9 0.0015 3.2E-08 60.2 5.5 32 231-262 2-36 (249)
328 cd02019 NK Nucleoside/nucleoti 96.9 0.0015 3.3E-08 48.0 4.5 29 231-259 2-31 (69)
329 cd01121 Sms Sms (bacterial rad 96.9 0.0013 2.9E-08 64.3 5.4 65 229-293 83-172 (372)
330 PRK09376 rho transcription ter 96.9 0.0016 3.6E-08 63.7 5.7 23 231-253 172-194 (416)
331 PF09848 DUF2075: Uncharacteri 96.9 0.0016 3.4E-08 63.3 5.5 24 229-252 2-25 (352)
332 cd00227 CPT Chloramphenicol (C 96.9 0.00076 1.7E-08 58.7 3.0 29 229-257 3-31 (175)
333 PTZ00088 adenylate kinase 1; P 96.9 0.00095 2.1E-08 61.0 3.8 29 231-259 9-37 (229)
334 cd03281 ABC_MSH5_euk MutS5 hom 96.9 0.0027 5.9E-08 57.3 6.7 65 229-293 30-122 (213)
335 COG1936 Predicted nucleotide k 96.9 0.00074 1.6E-08 58.6 2.8 28 231-259 3-30 (180)
336 TIGR01351 adk adenylate kinase 96.8 0.00099 2.1E-08 59.8 3.7 29 231-259 2-30 (210)
337 PF13238 AAA_18: AAA domain; P 96.8 0.00074 1.6E-08 54.7 2.6 22 231-252 1-22 (129)
338 PRK09862 putative ATP-dependen 96.8 0.0012 2.7E-08 66.9 4.5 47 205-253 189-235 (506)
339 PF08433 KTI12: Chromatin asso 96.8 0.0016 3.4E-08 61.0 4.9 61 231-291 4-82 (270)
340 COG2805 PilT Tfp pilus assembl 96.8 0.0047 1E-07 58.2 7.9 54 194-254 97-151 (353)
341 PRK00279 adk adenylate kinase; 96.8 0.0012 2.5E-08 59.5 3.8 29 231-259 3-31 (215)
342 PTZ00202 tuzin; Provisional 96.8 0.0041 9E-08 61.8 7.6 62 202-263 257-321 (550)
343 TIGR02012 tigrfam_recA protein 96.8 0.0034 7.3E-08 60.2 6.8 65 229-293 56-147 (321)
344 PRK04182 cytidylate kinase; Pr 96.8 0.0013 2.9E-08 56.7 3.7 29 231-259 3-31 (180)
345 PF05970 PIF1: PIF1-like helic 96.8 0.001 2.2E-08 64.9 3.3 36 219-254 13-48 (364)
346 PRK14527 adenylate kinase; Pro 96.8 0.001 2.2E-08 58.8 2.9 29 229-257 7-35 (191)
347 PF13521 AAA_28: AAA domain; P 96.7 0.001 2.2E-08 57.1 2.7 26 231-257 2-27 (163)
348 TIGR02173 cyt_kin_arch cytidyl 96.7 0.0015 3.2E-08 56.0 3.7 29 231-259 3-31 (171)
349 PLN02200 adenylate kinase fami 96.7 0.0015 3.3E-08 59.9 3.9 28 229-256 44-71 (234)
350 PRK06696 uridine kinase; Valid 96.7 0.0051 1.1E-07 55.8 7.3 36 230-265 24-62 (223)
351 PF01443 Viral_helicase1: Vira 96.7 0.0013 2.9E-08 59.3 3.4 22 231-252 1-22 (234)
352 COG0563 Adk Adenylate kinase a 96.7 0.0016 3.6E-08 57.1 3.8 26 230-255 2-27 (178)
353 cd02027 APSK Adenosine 5'-phos 96.7 0.002 4.4E-08 54.7 4.3 31 231-261 2-35 (149)
354 cd01393 recA_like RecA is a b 96.7 0.006 1.3E-07 54.9 7.6 34 230-263 21-63 (226)
355 PRK11889 flhF flagellar biosyn 96.7 0.0075 1.6E-07 59.3 8.6 64 229-292 242-333 (436)
356 PRK04040 adenylate kinase; Pro 96.7 0.0016 3.5E-08 57.7 3.7 33 229-263 3-37 (188)
357 PF00406 ADK: Adenylate kinase 96.7 0.0011 2.4E-08 56.2 2.5 26 233-258 1-26 (151)
358 PF05707 Zot: Zonular occluden 96.7 0.0029 6.2E-08 56.1 5.3 66 231-299 3-97 (193)
359 COG4088 Predicted nucleotide k 96.7 0.003 6.5E-08 56.5 5.1 24 230-253 3-26 (261)
360 COG1373 Predicted ATPase (AAA+ 96.7 0.0053 1.2E-07 60.7 7.5 64 230-293 39-108 (398)
361 PF06431 Polyoma_lg_T_C: Polyo 96.7 0.003 6.5E-08 60.9 5.5 71 217-291 142-214 (417)
362 PRK13894 conjugal transfer ATP 96.6 0.0078 1.7E-07 57.7 8.4 65 227-291 147-231 (319)
363 PLN02199 shikimate kinase 96.6 0.0031 6.6E-08 59.6 5.5 34 228-261 102-135 (303)
364 PRK01184 hypothetical protein; 96.6 0.0018 3.8E-08 56.7 3.6 29 230-259 3-31 (184)
365 TIGR00767 rho transcription te 96.6 0.0041 8.9E-08 61.2 6.4 24 230-253 170-193 (415)
366 PHA02530 pseT polynucleotide k 96.6 0.0018 3.9E-08 61.0 3.8 29 229-257 3-32 (300)
367 PRK13833 conjugal transfer pro 96.6 0.0063 1.4E-07 58.4 7.5 62 228-289 144-225 (323)
368 PRK00771 signal recognition pa 96.6 0.0052 1.1E-07 61.4 6.9 65 228-292 95-188 (437)
369 PF02367 UPF0079: Uncharacteri 96.6 0.007 1.5E-07 50.0 6.5 64 230-293 17-102 (123)
370 PRK10078 ribose 1,5-bisphospho 96.6 0.0018 4E-08 56.9 3.3 30 229-258 3-32 (186)
371 PRK14526 adenylate kinase; Pro 96.6 0.0022 4.8E-08 57.9 3.8 27 231-257 3-29 (211)
372 PRK08233 hypothetical protein; 96.6 0.0026 5.7E-08 55.0 4.1 23 231-253 6-28 (182)
373 COG1220 HslU ATP-dependent pro 96.6 0.0052 1.1E-07 58.8 6.3 39 227-265 49-87 (444)
374 cd00983 recA RecA is a bacter 96.5 0.0052 1.1E-07 59.0 6.4 64 230-293 57-147 (325)
375 TIGR01448 recD_rel helicase, p 96.5 0.011 2.4E-07 62.8 9.3 79 211-292 324-429 (720)
376 cd01394 radB RadB. The archaea 96.5 0.0053 1.1E-07 55.1 5.9 33 230-262 21-56 (218)
377 KOG3354 Gluconate kinase [Carb 96.5 0.0037 7.9E-08 53.4 4.4 44 228-273 12-55 (191)
378 PRK10436 hypothetical protein; 96.5 0.016 3.5E-07 58.3 9.8 86 204-291 195-299 (462)
379 cd00267 ABC_ATPase ABC (ATP-bi 96.5 0.011 2.3E-07 50.3 7.2 65 229-293 26-112 (157)
380 TIGR02533 type_II_gspE general 96.5 0.015 3.2E-07 59.1 9.3 87 203-291 218-323 (486)
381 KOG2227 Pre-initiation complex 96.4 0.0081 1.7E-07 59.6 7.1 117 207-326 150-300 (529)
382 PRK12726 flagellar biosynthesi 96.4 0.013 2.7E-07 57.5 8.3 35 229-263 207-244 (407)
383 TIGR02538 type_IV_pilB type IV 96.4 0.017 3.6E-07 59.8 9.8 87 204-292 293-398 (564)
384 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.4 0.0055 1.2E-07 51.7 5.2 65 229-293 27-102 (144)
385 smart00534 MUTSac ATPase domai 96.4 0.011 2.5E-07 51.9 7.4 63 231-293 2-92 (185)
386 PF06745 KaiC: KaiC; InterPro 96.4 0.0094 2E-07 53.8 7.0 35 229-263 20-58 (226)
387 PF03266 NTPase_1: NTPase; In 96.4 0.0026 5.7E-08 55.3 3.2 22 231-252 2-23 (168)
388 PRK12608 transcription termina 96.4 0.0072 1.6E-07 59.0 6.3 23 231-253 136-158 (380)
389 TIGR03881 KaiC_arch_4 KaiC dom 96.4 0.015 3.3E-07 52.5 8.2 34 229-262 21-57 (229)
390 KOG1051 Chaperone HSP104 and r 96.4 0.014 3E-07 62.7 8.8 88 206-293 185-294 (898)
391 PRK12339 2-phosphoglycerate ki 96.4 0.0034 7.4E-08 56.0 3.7 28 229-256 4-31 (197)
392 COG4178 ABC-type uncharacteriz 96.4 0.012 2.5E-07 60.7 8.0 25 228-252 419-443 (604)
393 PF01583 APS_kinase: Adenylyls 96.4 0.0047 1E-07 53.1 4.4 36 230-265 4-42 (156)
394 TIGR00376 DNA helicase, putati 96.3 0.0062 1.3E-07 63.8 6.1 51 210-262 157-210 (637)
395 TIGR02768 TraA_Ti Ti-type conj 96.3 0.01 2.2E-07 63.4 7.8 64 229-292 369-452 (744)
396 TIGR02322 phosphon_PhnN phosph 96.3 0.0029 6.4E-08 54.9 3.1 25 230-254 3-27 (179)
397 PRK14529 adenylate kinase; Pro 96.3 0.0028 6.1E-08 57.7 3.1 27 231-257 3-29 (223)
398 cd03243 ABC_MutS_homologs The 96.3 0.012 2.7E-07 52.3 7.1 65 229-293 30-122 (202)
399 cd01123 Rad51_DMC1_radA Rad51_ 96.3 0.009 2E-07 54.1 6.2 34 230-263 21-63 (235)
400 TIGR02788 VirB11 P-type DNA tr 96.3 0.01 2.3E-07 56.5 6.9 27 227-253 143-169 (308)
401 PRK09825 idnK D-gluconate kina 96.3 0.0069 1.5E-07 53.0 5.2 26 230-255 5-30 (176)
402 PRK05541 adenylylsulfate kinas 96.3 0.0048 1E-07 53.5 4.2 33 229-261 8-43 (176)
403 PRK00889 adenylylsulfate kinas 96.3 0.0049 1.1E-07 53.4 4.2 33 230-262 6-41 (175)
404 PF03029 ATP_bind_1: Conserved 96.3 0.0033 7.2E-08 57.8 3.2 31 233-263 1-34 (238)
405 PRK10646 ADP-binding protein; 96.3 0.038 8.2E-07 47.3 9.5 42 213-254 11-54 (153)
406 cd03115 SRP The signal recogni 96.3 0.006 1.3E-07 52.7 4.7 33 231-263 3-38 (173)
407 cd02022 DPCK Dephospho-coenzym 96.2 0.0044 9.6E-08 54.2 3.8 29 231-260 2-30 (179)
408 PF13555 AAA_29: P-loop contai 96.2 0.005 1.1E-07 44.5 3.3 22 231-252 26-47 (62)
409 TIGR02858 spore_III_AA stage I 96.2 0.0085 1.8E-07 56.1 5.8 25 229-253 112-136 (270)
410 cd03280 ABC_MutS2 MutS2 homolo 96.2 0.01 2.3E-07 52.7 6.1 21 229-249 29-49 (200)
411 TIGR00416 sms DNA repair prote 96.2 0.0072 1.6E-07 60.8 5.6 64 230-293 96-184 (454)
412 PF12780 AAA_8: P-loop contain 96.2 0.013 2.7E-07 54.9 6.9 64 228-291 31-101 (268)
413 PF06414 Zeta_toxin: Zeta toxi 96.2 0.0041 8.9E-08 55.3 3.5 38 228-265 15-53 (199)
414 PLN02674 adenylate kinase 96.2 0.0082 1.8E-07 55.4 5.5 29 229-257 32-60 (244)
415 cd00561 CobA_CobO_BtuR ATP:cor 96.2 0.023 4.9E-07 49.0 7.9 29 231-259 5-36 (159)
416 COG0529 CysC Adenylylsulfate k 96.2 0.0048 1E-07 53.9 3.7 36 230-265 25-63 (197)
417 PRK04841 transcriptional regul 96.2 0.019 4.1E-07 62.2 9.1 58 200-262 7-65 (903)
418 TIGR02524 dot_icm_DotB Dot/Icm 96.2 0.0067 1.5E-07 59.1 5.1 45 203-252 114-158 (358)
419 cd03222 ABC_RNaseL_inhibitor T 96.2 0.0088 1.9E-07 52.5 5.3 65 229-293 26-103 (177)
420 PRK13406 bchD magnesium chelat 96.2 0.015 3.3E-07 60.2 7.8 91 214-326 10-118 (584)
421 cd03284 ABC_MutS1 MutS1 homolo 96.2 0.012 2.6E-07 53.2 6.3 62 229-290 31-120 (216)
422 cd01983 Fer4_NifH The Fer4_Nif 96.2 0.011 2.4E-07 44.9 5.1 30 231-260 2-34 (99)
423 PRK07132 DNA polymerase III su 96.1 0.045 9.7E-07 52.1 10.1 77 216-293 5-104 (299)
424 PRK10536 hypothetical protein; 96.1 0.018 3.9E-07 53.5 7.2 38 212-251 60-97 (262)
425 PRK05480 uridine/cytidine kina 96.1 0.008 1.7E-07 53.7 4.8 32 230-261 8-40 (209)
426 cd01130 VirB11-like_ATPase Typ 96.1 0.0046 9.9E-08 54.4 3.2 26 228-253 25-50 (186)
427 TIGR03878 thermo_KaiC_2 KaiC d 96.1 0.0071 1.5E-07 56.3 4.5 34 229-262 37-73 (259)
428 PRK14974 cell division protein 96.1 0.017 3.7E-07 55.8 7.2 34 229-262 141-177 (336)
429 PRK04328 hypothetical protein; 96.1 0.019 4.2E-07 53.0 7.4 45 229-275 24-71 (249)
430 PLN02165 adenylate isopentenyl 96.1 0.0049 1.1E-07 59.2 3.5 31 229-259 44-74 (334)
431 PRK10463 hydrogenase nickel in 96.1 0.039 8.5E-07 52.1 9.4 22 231-252 107-128 (290)
432 PRK12338 hypothetical protein; 96.1 0.0054 1.2E-07 58.6 3.7 28 229-256 5-32 (319)
433 TIGR02236 recomb_radA DNA repa 96.1 0.013 2.9E-07 55.7 6.3 34 230-263 97-139 (310)
434 PRK06067 flagellar accessory p 96.1 0.0086 1.9E-07 54.5 4.8 35 228-262 25-62 (234)
435 cd03287 ABC_MSH3_euk MutS3 hom 96.0 0.018 3.8E-07 52.4 6.8 65 229-293 32-124 (222)
436 COG1419 FlhF Flagellar GTP-bin 96.0 0.012 2.5E-07 57.8 5.8 65 228-292 203-294 (407)
437 COG0467 RAD55 RecA-superfamily 96.0 0.0084 1.8E-07 55.5 4.7 36 228-263 23-61 (260)
438 PRK11545 gntK gluconate kinase 96.0 0.0051 1.1E-07 53.1 2.9 27 234-260 1-27 (163)
439 PF00519 PPV_E1_C: Papillomavi 96.0 0.0098 2.1E-07 58.0 5.1 33 226-258 260-292 (432)
440 cd04159 Arl10_like Arl10-like 96.0 0.012 2.6E-07 48.6 5.1 21 231-251 2-22 (159)
441 PRK06851 hypothetical protein; 96.0 0.0098 2.1E-07 58.0 5.1 38 226-263 212-252 (367)
442 PLN02459 probable adenylate ki 96.0 0.0071 1.5E-07 56.3 3.9 28 231-258 32-59 (261)
443 cd02028 UMPK_like Uridine mono 96.0 0.0083 1.8E-07 52.6 4.2 32 231-262 2-36 (179)
444 PRK14730 coaE dephospho-CoA ki 96.0 0.0068 1.5E-07 53.9 3.7 30 230-259 3-32 (195)
445 TIGR03877 thermo_KaiC_1 KaiC d 96.0 0.011 2.3E-07 54.1 5.0 36 228-263 21-59 (237)
446 TIGR03263 guanyl_kin guanylate 96.0 0.0048 1E-07 53.5 2.5 24 230-253 3-26 (180)
447 PRK05973 replicative DNA helic 95.9 0.0091 2E-07 54.8 4.3 89 161-262 5-101 (237)
448 PRK06761 hypothetical protein; 95.9 0.0078 1.7E-07 56.7 4.0 31 229-259 4-34 (282)
449 PRK13889 conjugal transfer rel 95.9 0.031 6.6E-07 61.1 9.0 63 230-292 364-446 (988)
450 PRK09354 recA recombinase A; P 95.9 0.015 3.1E-07 56.5 5.9 64 230-293 62-152 (349)
451 PRK13808 adenylate kinase; Pro 95.9 0.0072 1.6E-07 58.2 3.7 29 231-259 3-31 (333)
452 cd04160 Arfrp1 Arfrp1 subfamil 95.9 0.019 4.1E-07 48.6 6.0 22 230-251 1-22 (167)
453 cd01131 PilT Pilus retraction 95.9 0.0065 1.4E-07 54.1 3.2 23 231-253 4-26 (198)
454 cd02023 UMPK Uridine monophosp 95.9 0.011 2.4E-07 52.3 4.6 22 231-252 2-23 (198)
455 KOG0478 DNA replication licens 95.9 0.0066 1.4E-07 62.6 3.4 84 210-293 432-540 (804)
456 TIGR00017 cmk cytidylate kinas 95.8 0.0089 1.9E-07 54.2 3.9 29 230-258 4-32 (217)
457 PF00448 SRP54: SRP54-type pro 95.8 0.0055 1.2E-07 54.7 2.4 35 229-263 2-39 (196)
458 cd00071 GMPK Guanosine monopho 95.8 0.0082 1.8E-07 50.2 3.4 24 231-254 2-25 (137)
459 cd01672 TMPK Thymidine monopho 95.8 0.011 2.5E-07 51.5 4.3 30 231-260 3-35 (200)
460 cd03282 ABC_MSH4_euk MutS4 hom 95.8 0.017 3.7E-07 51.8 5.4 65 229-293 30-122 (204)
461 PRK00081 coaE dephospho-CoA ki 95.8 0.01 2.2E-07 52.7 3.9 30 230-260 4-33 (194)
462 TIGR00235 udk uridine kinase. 95.8 0.0079 1.7E-07 53.8 3.1 23 231-253 9-31 (207)
463 PRK00300 gmk guanylate kinase; 95.7 0.0081 1.7E-07 53.3 3.2 25 229-253 6-30 (205)
464 PF08477 Miro: Miro-like prote 95.7 0.0082 1.8E-07 48.0 2.9 22 231-252 2-23 (119)
465 PRK14737 gmk guanylate kinase; 95.7 0.0077 1.7E-07 53.2 3.0 25 228-252 4-28 (186)
466 PRK14723 flhF flagellar biosyn 95.7 0.042 9.1E-07 58.3 8.8 63 230-292 187-276 (767)
467 PRK04301 radA DNA repair and r 95.7 0.021 4.6E-07 54.6 6.2 34 230-263 104-146 (317)
468 PRK14021 bifunctional shikimat 95.7 0.0093 2E-07 61.3 3.9 33 229-261 7-39 (542)
469 COG0802 Predicted ATPase or ki 95.7 0.074 1.6E-06 45.2 8.7 38 216-253 11-50 (149)
470 cd02024 NRK1 Nicotinamide ribo 95.7 0.0097 2.1E-07 52.7 3.5 23 231-253 2-24 (187)
471 PRK00091 miaA tRNA delta(2)-is 95.7 0.01 2.2E-07 56.7 3.8 31 229-259 5-35 (307)
472 PF00488 MutS_V: MutS domain V 95.7 0.036 7.8E-07 50.8 7.4 65 229-293 44-136 (235)
473 PRK08533 flagellar accessory p 95.7 0.015 3.3E-07 53.1 4.8 33 229-261 25-60 (230)
474 PRK05818 DNA polymerase III su 95.7 0.044 9.5E-07 51.0 7.9 66 228-293 7-102 (261)
475 PRK12724 flagellar biosynthesi 95.7 0.026 5.7E-07 56.0 6.7 33 231-263 226-262 (432)
476 TIGR00174 miaA tRNA isopenteny 95.7 0.012 2.6E-07 55.6 4.1 30 231-260 2-31 (287)
477 PRK05537 bifunctional sulfate 95.7 0.013 2.9E-07 60.5 4.9 34 231-264 395-432 (568)
478 PRK07667 uridine kinase; Provi 95.7 0.024 5.3E-07 50.1 6.0 33 231-263 20-55 (193)
479 TIGR02655 circ_KaiC circadian 95.7 0.029 6.3E-07 56.9 7.2 47 228-276 21-71 (484)
480 cd00984 DnaB_C DnaB helicase C 95.7 0.014 3.1E-07 53.0 4.6 34 230-263 15-52 (242)
481 COG1485 Predicted ATPase [Gene 95.7 0.029 6.2E-07 54.0 6.6 27 228-254 65-91 (367)
482 PRK13975 thymidylate kinase; P 95.7 0.0092 2E-07 52.5 3.2 27 230-256 4-30 (196)
483 PF00485 PRK: Phosphoribulokin 95.7 0.0078 1.7E-07 53.2 2.7 23 231-253 2-24 (194)
484 PRK13951 bifunctional shikimat 95.6 0.01 2.2E-07 60.2 3.8 32 230-261 2-33 (488)
485 PRK06851 hypothetical protein; 95.6 0.015 3.3E-07 56.7 4.9 32 228-259 30-64 (367)
486 PHA00350 putative assembly pro 95.6 0.024 5.2E-07 55.9 6.2 61 231-293 4-95 (399)
487 PRK00023 cmk cytidylate kinase 95.6 0.0094 2E-07 54.3 3.2 32 229-260 5-36 (225)
488 COG5245 DYN1 Dynein, heavy cha 95.6 0.016 3.6E-07 64.4 5.4 64 226-289 1492-1573(3164)
489 PRK13900 type IV secretion sys 95.6 0.022 4.8E-07 55.0 5.9 27 227-253 159-185 (332)
490 PRK04220 2-phosphoglycerate ki 95.6 0.012 2.5E-07 55.9 3.9 26 230-255 94-119 (301)
491 cd04119 RJL RJL (RabJ-Like) su 95.6 0.019 4.2E-07 48.2 4.9 21 231-251 3-23 (168)
492 PRK09518 bifunctional cytidyla 95.6 0.01 2.2E-07 63.0 3.9 29 231-259 4-32 (712)
493 PRK14738 gmk guanylate kinase; 95.6 0.008 1.7E-07 53.9 2.6 23 229-251 14-36 (206)
494 TIGR00152 dephospho-CoA kinase 95.6 0.012 2.6E-07 51.8 3.6 30 231-260 2-31 (188)
495 PRK13826 Dtr system oriT relax 95.6 0.049 1.1E-06 60.0 8.9 65 228-292 397-481 (1102)
496 KOG1808 AAA ATPase containing 95.6 0.055 1.2E-06 61.9 9.4 91 203-293 412-521 (1856)
497 COG1066 Sms Predicted ATP-depe 95.5 0.024 5.3E-07 55.6 5.7 64 230-293 95-182 (456)
498 PF03308 ArgK: ArgK protein; 95.5 0.023 4.9E-07 52.7 5.3 50 216-265 15-71 (266)
499 smart00173 RAS Ras subfamily o 95.5 0.032 6.9E-07 47.0 5.9 21 231-251 3-23 (164)
500 PRK08356 hypothetical protein; 95.5 0.013 2.9E-07 51.8 3.7 25 230-255 7-31 (195)
No 1
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-77 Score=573.66 Aligned_cols=324 Identities=42% Similarity=0.711 Sum_probs=300.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCHhHHHHHHHHHHHHhhccCCCcEEEEeccCCCCCccHHHHHHHHHhCCCCCCCC
Q 035959 5 TTVMSVAASAAATFMLIQSYTRIYLPDEVSSYFDQKFKNFIARIYSESTLVIEEYDDGLNRNKLFKAAKLYLEPKIPPNV 84 (338)
Q Consensus 5 ~~~~~~~~S~~a~~~l~~~~~~~~~P~~l~~~~~~~~~~l~~~~~~~~ti~i~e~~~~~~~n~~y~a~~~YLs~~~~~~~ 84 (338)
+++|+.+||++|++|++|+|+++++|.+++.|+.+++++|++++++|.++.|.|+ +|+.+|++|.|+|.||++++++.+
T Consensus 1 ~~~~~~~~s~~~~~~~~~~~~~~~~p~~~~~y~~~~~~~l~g~~s~~~~~~~~e~-~g~~~n~~~~aie~yl~~k~~~~~ 79 (457)
T KOG0743|consen 1 SSVFTAYASLLGSLMFIKSMLQDIIPPSINPYFISALRGLFGVFSSYALIRIGEQ-DGVFRNQLYVAIEVYLSSKSSAIA 79 (457)
T ss_pred CCccchhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhccCcccEEEEeehh-ccchHHHHHHHHHHhhhccchhhh
Confidence 3579999999999999999999999999999999999999999999999999999 889999999999999999999999
Q ss_pred CeeEeecCCCCCceEEEccCCceEEEeecCeEEEEEEEeecCCCCCcCCCCCCCCCCCcceEEEEEcCcchhhHHhhhhH
Q 035959 85 NRIKINLPKKESEVSLSVEKNQAVFDVFNGVRLKWKFELKPAPDQELCNNGNYMFKDRVPCFELRFHKKHKETVLGTYIP 164 (338)
Q Consensus 85 ~rL~~~~~~~~~~~~~~l~~ge~v~D~f~G~~~~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~~~~vl~~~l~ 164 (338)
+|++.++..+++++++.++++++|.|+|+||+++|++++..+..+... +...++|+|+|+|++++|+.|+.+||+
T Consensus 80 ~rl~~~~~~~s~~~~l~~~~~~~i~d~f~gv~~~w~~~~~~~~~~~~~-----~~~~~~r~~~L~f~k~~~e~V~~syl~ 154 (457)
T KOG0743|consen 80 KRLTQNLSKNSKSLVLGLDDNEEISDEFEGVPVKWRHFVDYNEKWIFV-----EREREKRYFELTFHKKPRELVTLSYLP 154 (457)
T ss_pred hhhhhhhccccccceEEecCCcEEEEEEeceEEEEEEEEEecCccccc-----ccCCcceEEEEEecCccHHHhHHhHHH
Confidence 999999999999999999999999999999999999998877665332 224688999999999999999999999
Q ss_pred HHHHHhHHHHHhccceeeeeccCc--cC--CCCccccccCCCCCccccccCChhHHHHHHHHHHh-------------hh
Q 035959 165 HILKKSKELSKKKKTLKLFTLNCN--RI--NHDTRQSAILDHPSTFDTLAMDTDMKKMIMDDLER-------------AW 227 (338)
Q Consensus 165 ~v~~~~~~~~~~~~~~~l~~~~~~--~~--~~~~w~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~-------------~~ 227 (338)
|+.+++++|.++++.+++|++++. .+ .+..|..++++||++|++++|++++|++|++||++ ||
T Consensus 155 ~v~~~~k~I~~~~r~~kl~t~~~~~~~~~~~~~~W~~v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkaw 234 (457)
T KOG0743|consen 155 YVVSKAKEILEENRELKLYTNSGKTVIYTAKGGEWRSVGFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAW 234 (457)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcccccccCCcceecCCCCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcch
Confidence 999999999999999999999843 22 47799999999999999999999999999999998 89
Q ss_pred cCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCCchHHHHHHHhcCCCcEEEEcCCCccCCcccccccccCCCCC
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKVLIATENKSILVVGDIDCCTELQDRSAQARTASPD 307 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~~~~l~~~l~~~~~~~Il~iDeiD~~~~~~~r~~~~~~~~~~ 307 (338)
+|||||||||||||||+++|||+++++++|+++++++..+++|+++|..+++++||+||||||.+.++.|.+....+.+
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~dLr~LL~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~- 313 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDSDLRHLLLATPNKSILLIEDIDCSFDLRERRKKKKENFE- 313 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcHHHHHHHHhCCCCcEEEEeeccccccccccccccccccc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999998887766542211
Q ss_pred CCCCCcchhhHHHHHHHhcCCcCCCCCcccC
Q 035959 308 WHSPKRDQITLSGLLNFTDGLWSSCGDERII 338 (338)
Q Consensus 308 ~~~~~~~~~~ls~lLn~iDgl~s~~g~erii 338 (338)
...+++|||||||+||||||+||+||||
T Consensus 314 ---~~~~~VTlSGLLNfiDGlwSscg~ERIi 341 (457)
T KOG0743|consen 314 ---GDLSRVTLSGLLNFLDGLWSSCGDERII 341 (457)
T ss_pred ---CCcceeehHHhhhhhccccccCCCceEE
Confidence 1357899999999999999999999997
No 2
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=99.96 E-value=1.7e-29 Score=200.59 Aligned_cols=97 Identities=36% Similarity=0.662 Sum_probs=93.6
Q ss_pred hCCHhHHHHHHHHHHHHhh-ccCCCcEEEEeccCCCCCccHHHHHHHHHhCCCCCCCCCeeEeecCCCCCceEEEccCCc
Q 035959 28 YLPDEVSSYFDQKFKNFIA-RIYSESTLVIEEYDDGLNRNKLFKAAKLYLEPKIPPNVNRIKINLPKKESEVSLSVEKNQ 106 (338)
Q Consensus 28 ~~P~~l~~~~~~~~~~l~~-~~~~~~ti~i~e~~~~~~~n~~y~a~~~YLs~~~~~~~~rL~~~~~~~~~~~~~~l~~ge 106 (338)
|||++||+|+.+++++++. +++||+||+|+|+ +|+.+|++|+||++||+++++++++||++++++++++++++|++||
T Consensus 1 ~~P~~lr~~~~~~~~~~~~~~~s~~~ti~I~E~-~g~~~N~ly~a~~~YL~s~~s~~a~rL~~~~~~~~~~~~l~l~~~e 79 (98)
T PF14363_consen 1 LLPHELRSYLRSLLRRLFSSRFSPYLTIVIPEF-DGLSRNELYDAAQAYLSSKISPSARRLKASKSKNSKNLVLSLDDGE 79 (98)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCCcEEEEEEeC-CCccccHHHHHHHHHHhhccCcccceeeecccCCCCceEEecCCCC
Confidence 6899999999999998886 8999999999999 7999999999999999999999999999999999999999999999
Q ss_pred eEEEeecCeEEEEEEEeec
Q 035959 107 AVFDVFNGVRLKWKFELKP 125 (338)
Q Consensus 107 ~v~D~f~G~~~~W~~~~~~ 125 (338)
+|.|+|+||+|||++++++
T Consensus 80 ~V~D~F~Gv~v~W~~~~~e 98 (98)
T PF14363_consen 80 EVVDVFEGVKVWWSSVCTE 98 (98)
T ss_pred EEEEEECCEEEEEEEEccC
Confidence 9999999999999999864
No 3
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2.5e-22 Score=188.55 Aligned_cols=120 Identities=30% Similarity=0.458 Sum_probs=98.8
Q ss_pred ccccCCCCCccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcC-----CchHH
Q 035959 196 QSAILDHPSTFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVE-----GNKHL 270 (338)
Q Consensus 196 ~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~-----~~~~l 270 (338)
..+|+.||..|+.++.+|+ +|+|||||||||||.||+|+|++.+..|+.+..+++. ..+.|
T Consensus 167 VELPL~~PElF~~~GI~PP--------------KGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRl 232 (406)
T COG1222 167 VELPLKNPELFEELGIDPP--------------KGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARL 232 (406)
T ss_pred hcccccCHHHHHHcCCCCC--------------CceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHH
Confidence 3578888888888888775 9999999999999999999999999999999999876 24555
Q ss_pred -HHHHHhc--CCCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcCCCCCcccC
Q 035959 271 -RKVLIAT--ENKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSSCGDERII 338 (338)
Q Consensus 271 -~~~l~~~--~~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s~~g~erii 338 (338)
+.+|.-+ .+||||||||||++.. +|..... +.+...++|+-+|||+|||..+. |+.+||
T Consensus 233 VRelF~lArekaPsIIFiDEIDAIg~--kR~d~~t------~gDrEVQRTmleLL~qlDGFD~~-~nvKVI 294 (406)
T COG1222 233 VRELFELAREKAPSIIFIDEIDAIGA--KRFDSGT------SGDREVQRTMLELLNQLDGFDPR-GNVKVI 294 (406)
T ss_pred HHHHHHHHhhcCCeEEEEechhhhhc--ccccCCC------CchHHHHHHHHHHHHhccCCCCC-CCeEEE
Confidence 4444433 3899999999999998 7765544 23567899999999999999864 787775
No 4
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=2.4e-19 Score=177.53 Aligned_cols=116 Identities=24% Similarity=0.371 Sum_probs=98.7
Q ss_pred ccccccCChhHHHHHHHHHHh------------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC------
Q 035959 205 TFDTLAMDTDMKKMIMDDLER------------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG------ 266 (338)
Q Consensus 205 ~f~~l~~~~~~k~~i~~~l~~------------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~------ 266 (338)
.|+++++.+....++.+.+.. .++||+|||||||||||+||+|+|++++.+++.++..++.+
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGES 267 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGES 267 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCccc
Confidence 688888877776666665554 46799999999999999999999999999999999998873
Q ss_pred chHHHHHHHhcC--CCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcCC
Q 035959 267 NKHLRKVLIATE--NKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSS 331 (338)
Q Consensus 267 ~~~l~~~l~~~~--~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s~ 331 (338)
+..++.+|.++. .|||+||||||++.+ +|..... .-.++.+++||+.|||+.-.
T Consensus 268 EkkiRelF~~A~~~aPcivFiDeIDAI~p--kRe~aqr---------eMErRiVaQLlt~mD~l~~~ 323 (802)
T KOG0733|consen 268 EKKIRELFDQAKSNAPCIVFIDEIDAITP--KREEAQR---------EMERRIVAQLLTSMDELSNE 323 (802)
T ss_pred HHHHHHHHHHHhccCCeEEEeeccccccc--chhhHHH---------HHHHHHHHHHHHhhhccccc
Confidence 678999999885 799999999999999 7765433 35689999999999999643
No 5
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=7.7e-19 Score=177.66 Aligned_cols=119 Identities=24% Similarity=0.375 Sum_probs=103.7
Q ss_pred CCccccccCChhHHHHHHHHHHh------------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcC-----
Q 035959 203 PSTFDTLAMDTDMKKMIMDDLER------------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVE----- 265 (338)
Q Consensus 203 p~~f~~l~~~~~~k~~i~~~l~~------------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~----- 265 (338)
.-.|+++++-+++|.+|.+-++- ..+.|+|||||||||||.+|+|+|-++...++.|...++.
T Consensus 668 nV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVG 747 (953)
T KOG0736|consen 668 NVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVG 747 (953)
T ss_pred ccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhc
Confidence 34899999999999999998887 2356999999999999999999999999999999888865
Q ss_pred -CchHHHHHHHhcC--CCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcC
Q 035959 266 -GNKHLRKVLIATE--NKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWS 330 (338)
Q Consensus 266 -~~~~l~~~l~~~~--~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s 330 (338)
+++++|++|.++. +|||||+||+|++++.+.|.+++ .++..+.+|+||..|||+..
T Consensus 748 qSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDS---------GGVMDRVVSQLLAELDgls~ 806 (953)
T KOG0736|consen 748 QSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDS---------GGVMDRVVSQLLAELDGLSD 806 (953)
T ss_pred chHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCc---------cccHHHHHHHHHHHhhcccC
Confidence 5789999999985 89999999999999944444443 36889999999999999974
No 6
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=2e-18 Score=172.79 Aligned_cols=117 Identities=25% Similarity=0.400 Sum_probs=100.8
Q ss_pred CCccccccCChhHHHHHHHHHHh-------------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcC----
Q 035959 203 PSTFDTLAMDTDMKKMIMDDLER-------------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVE---- 265 (338)
Q Consensus 203 p~~f~~l~~~~~~k~~i~~~l~~-------------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~---- 265 (338)
..+|+++++.+++|+++.+.+.. ..++|+|||||||||||++++|+|++.+.+++.+.+.++.
T Consensus 430 ~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~v 509 (693)
T KOG0730|consen 430 NVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYV 509 (693)
T ss_pred CCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhc
Confidence 44889999999999888877665 4578999999999999999999999999999999988876
Q ss_pred --CchHHHHHHHhcC--CCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcC
Q 035959 266 --GNKHLRKVLIATE--NKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWS 330 (338)
Q Consensus 266 --~~~~l~~~l~~~~--~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s 330 (338)
++..++++|.++. .|||||+||||++.. .|+++. .+...+.|++||+.|||+-.
T Consensus 510 GeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~--~R~g~~---------~~v~~RVlsqLLtEmDG~e~ 567 (693)
T KOG0730|consen 510 GESERAIREVFRKARQVAPCIIFFDEIDALAG--SRGGSS---------SGVTDRVLSQLLTEMDGLEA 567 (693)
T ss_pred CchHHHHHHHHHHHhhcCCeEEehhhHHhHhh--ccCCCc---------cchHHHHHHHHHHHcccccc
Confidence 3677999999885 789999999999988 776432 25778999999999999964
No 7
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=2.8e-18 Score=162.63 Aligned_cols=119 Identities=24% Similarity=0.434 Sum_probs=98.7
Q ss_pred ccccccCChhHHHHHHHHHHh-------------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC-----
Q 035959 205 TFDTLAMDTDMKKMIMDDLER-------------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG----- 266 (338)
Q Consensus 205 ~f~~l~~~~~~k~~i~~~l~~-------------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~----- 266 (338)
.|+++++..+.|+-+.+.+.- || +|+|++||||||||.||+|+|.+++..++.|+.+.+.+
T Consensus 210 kW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPW-kgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRGe 288 (491)
T KOG0738|consen 210 KWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPW-KGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRGE 288 (491)
T ss_pred ChHhhcchHHHHHHHHHHHhhhhhhHHHHhhccccc-ceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhccc
Confidence 678888877777766665554 56 69999999999999999999999999999999998874
Q ss_pred chHHHHHHHhcC---CCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcCCCCC
Q 035959 267 NKHLRKVLIATE---NKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSSCGD 334 (338)
Q Consensus 267 ~~~l~~~l~~~~---~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s~~g~ 334 (338)
.+.|.++|++++ .|++|||||||++.. .|++..+ +..+++.-+.||-+|||+-...-+
T Consensus 289 SEKlvRlLFemARfyAPStIFiDEIDslcs--~RG~s~E--------HEaSRRvKsELLvQmDG~~~t~e~ 349 (491)
T KOG0738|consen 289 SEKLVRLLFEMARFYAPSTIFIDEIDSLCS--QRGGSSE--------HEASRRVKSELLVQMDGVQGTLEN 349 (491)
T ss_pred hHHHHHHHHHHHHHhCCceeehhhHHHHHh--cCCCccc--------hhHHHHHHHHHHHHhhcccccccc
Confidence 456778887775 899999999999988 6655433 678899999999999999765443
No 8
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=4.1e-18 Score=156.33 Aligned_cols=119 Identities=29% Similarity=0.437 Sum_probs=92.2
Q ss_pred cccCCCCCccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcC-----CchHH-
Q 035959 197 SAILDHPSTFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVE-----GNKHL- 270 (338)
Q Consensus 197 ~~~~~~p~~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~-----~~~~l- 270 (338)
++|+.||..++.++..| +.|++|||+||||||.||+|+||.....++.+-.+++. +...|
T Consensus 202 ELPLthPE~YeemGikp--------------PKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklv 267 (440)
T KOG0726|consen 202 ELPLTHPEYYEEMGIKP--------------PKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLV 267 (440)
T ss_pred cCCCCCHHHHHHcCCCC--------------CCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHH
Confidence 35566666666665554 48999999999999999999999999999888888765 23444
Q ss_pred HHHHHhc--CCCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcCCCCCcccC
Q 035959 271 RKVLIAT--ENKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSSCGDERII 338 (338)
Q Consensus 271 ~~~l~~~--~~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s~~g~erii 338 (338)
+++|.-+ .+|+|+||||||++.. +|-+.++ +.....++|+-.|||++||..|. |+..||
T Consensus 268 RqlF~vA~e~apSIvFiDEIdAiGt--KRyds~S------ggerEiQrtmLELLNQldGFdsr-gDvKvi 328 (440)
T KOG0726|consen 268 RELFRVAEEHAPSIVFIDEIDAIGT--KRYDSNS------GGEREIQRTMLELLNQLDGFDSR-GDVKVI 328 (440)
T ss_pred HHHHHHHHhcCCceEEeehhhhhcc--ccccCCC------ccHHHHHHHHHHHHHhccCcccc-CCeEEE
Confidence 4555444 3899999999999988 7755544 23467789999999999999974 777664
No 9
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=2e-17 Score=164.08 Aligned_cols=114 Identities=23% Similarity=0.327 Sum_probs=95.9
Q ss_pred ccccccCChhHHHHHHHHHHh-------------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcC------
Q 035959 205 TFDTLAMDTDMKKMIMDDLER-------------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVE------ 265 (338)
Q Consensus 205 ~f~~l~~~~~~k~~i~~~l~~-------------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~------ 265 (338)
+|++++.-.+++.++...+.. ..+.|+|||||||||||.||+|+||+.|.+++.|-..++.
T Consensus 509 tW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGE 588 (802)
T KOG0733|consen 509 TWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGE 588 (802)
T ss_pred ChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhh
Confidence 678888777777777766665 2367999999999999999999999999999999988875
Q ss_pred CchHHHHHHHhcC--CCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCc
Q 035959 266 GNKHLRKVLIATE--NKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLW 329 (338)
Q Consensus 266 ~~~~l~~~l~~~~--~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~ 329 (338)
++..++++|.++. .|||||+||||++.+ .|.... ...+.+.+++||..|||+-
T Consensus 589 SErAVR~vFqRAR~saPCVIFFDEiDaL~p--~R~~~~---------s~~s~RvvNqLLtElDGl~ 643 (802)
T KOG0733|consen 589 SERAVRQVFQRARASAPCVIFFDEIDALVP--RRSDEG---------SSVSSRVVNQLLTELDGLE 643 (802)
T ss_pred HHHHHHHHHHHhhcCCCeEEEecchhhcCc--ccCCCC---------chhHHHHHHHHHHHhcccc
Confidence 3566899999885 799999999999998 664433 3567899999999999994
No 10
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=2.5e-17 Score=148.72 Aligned_cols=124 Identities=27% Similarity=0.341 Sum_probs=94.8
Q ss_pred ccccccCChhHHHHHHHHHHh-------------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC-----
Q 035959 205 TFDTLAMDTDMKKMIMDDLER-------------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG----- 266 (338)
Q Consensus 205 ~f~~l~~~~~~k~~i~~~l~~-------------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~----- 266 (338)
++.++++-+-.|+++.+.++- .++||+|||||||||||+|++|+|++....++.+..++...
T Consensus 153 sy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylge 232 (408)
T KOG0727|consen 153 SYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 232 (408)
T ss_pred cccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhcc
Confidence 566666666666666665554 35799999999999999999999999999999999888652
Q ss_pred -chHHHHHHHhc--CCCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcCCCCCccc
Q 035959 267 -NKHLRKVLIAT--ENKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSSCGDERI 337 (338)
Q Consensus 267 -~~~l~~~l~~~--~~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s~~g~eri 337 (338)
..-++.+|.-+ ..|+||||||||+++. +|-.... +.+...++.|-.|||+|||.... .+..+
T Consensus 233 gprmvrdvfrlakenapsiifideidaiat--krfdaqt------gadrevqril~ellnqmdgfdq~-~nvkv 297 (408)
T KOG0727|consen 233 GPRMVRDVFRLAKENAPSIIFIDEIDAIAT--KRFDAQT------GADREVQRILIELLNQMDGFDQT-TNVKV 297 (408)
T ss_pred CcHHHHHHHHHHhccCCcEEEeehhhhHhh--hhccccc------cccHHHHHHHHHHHHhccCcCcc-cceEE
Confidence 22345555444 4799999999999988 7755544 23567899999999999999743 34433
No 11
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=4.4e-17 Score=159.51 Aligned_cols=119 Identities=27% Similarity=0.404 Sum_probs=98.2
Q ss_pred CccccccCChhHHHH---HHHHHHh---------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC-----
Q 035959 204 STFDTLAMDTDMKKM---IMDDLER---------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG----- 266 (338)
Q Consensus 204 ~~f~~l~~~~~~k~~---i~~~l~~---------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~----- 266 (338)
-+|+++-+-++.|++ |++.|.. ..++|+||.||||||||.||+|+|.+.+.+++....++...
T Consensus 301 v~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGv 380 (752)
T KOG0734|consen 301 VTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGV 380 (752)
T ss_pred cccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcc
Confidence 379999887777754 5555555 45789999999999999999999999999999999888652
Q ss_pred -chHHHHHHHhcC--CCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcCCCC
Q 035959 267 -NKHLRKVLIATE--NKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSSCG 333 (338)
Q Consensus 267 -~~~l~~~l~~~~--~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s~~g 333 (338)
-..++.+|..+. .||||||||||++.. +|..... ...+.|+++||-.|||.-..+|
T Consensus 381 GArRVRdLF~aAk~~APcIIFIDEiDavG~--kR~~~~~---------~y~kqTlNQLLvEmDGF~qNeG 439 (752)
T KOG0734|consen 381 GARRVRDLFAAAKARAPCIIFIDEIDAVGG--KRNPSDQ---------HYAKQTLNQLLVEMDGFKQNEG 439 (752)
T ss_pred cHHHHHHHHHHHHhcCCeEEEEechhhhcc--cCCccHH---------HHHHHHHHHHHHHhcCcCcCCc
Confidence 467899998875 799999999999988 6755432 2678999999999999976543
No 12
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=7.2e-18 Score=152.77 Aligned_cols=159 Identities=21% Similarity=0.296 Sum_probs=117.4
Q ss_pred cCcchhhHHhhhhHHHHHHhHHHHHhccceeeeeccCccCCC----CccccccCCCCCccccccCChhHHHHHHHHHHhh
Q 035959 151 HKKHKETVLGTYIPHILKKSKELSKKKKTLKLFTLNCNRINH----DTRQSAILDHPSTFDTLAMDTDMKKMIMDDLERA 226 (338)
Q Consensus 151 ~~~~~~~vl~~~l~~v~~~~~~~~~~~~~~~l~~~~~~~~~~----~~w~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~~ 226 (338)
-.++...|++...+..-...+++....+...-|+..++.+.. ..--.+|..|+..|++++..|+
T Consensus 138 vnKDsyliletLP~eyDsrVkaMevDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pP------------ 205 (424)
T KOG0652|consen 138 VNKDSYLILETLPSEYDSRVKAMEVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPP------------ 205 (424)
T ss_pred ecCCceeehhcCChhhhhhcceeeeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCC------------
Confidence 345556677777777777777777777777777765443211 1122367889999999988775
Q ss_pred hcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcC-----CchHH-HHHHHhc--CCCcEEEEcCCCccCCccccc
Q 035959 227 WKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVE-----GNKHL-RKVLIAT--ENKSILVVGDIDCCTELQDRS 298 (338)
Q Consensus 227 ~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~-----~~~~l-~~~l~~~--~~~~Il~iDeiD~~~~~~~r~ 298 (338)
.|+|+|||||||||.+++|.|...+..+..+-...+. +...| +..|.-+ ..|+||||||+|++.. +|-
T Consensus 206 --KGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGt--KRf 281 (424)
T KOG0652|consen 206 --KGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGT--KRF 281 (424)
T ss_pred --CceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhcc--ccc
Confidence 8999999999999999999999998877766555443 23443 4444433 4799999999999988 776
Q ss_pred ccccCCCCCCCCCCcchhhHHHHHHHhcCCcCC
Q 035959 299 AQARTASPDWHSPKRDQITLSGLLNFTDGLWSS 331 (338)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s~ 331 (338)
.+..+ .+...++|+-.|||++||..|.
T Consensus 282 DSek~------GDREVQRTMLELLNQLDGFss~ 308 (424)
T KOG0652|consen 282 DSEKA------GDREVQRTMLELLNQLDGFSSD 308 (424)
T ss_pred ccccc------ccHHHHHHHHHHHHhhcCCCCc
Confidence 65542 3567899999999999999874
No 13
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.69 E-value=3.8e-17 Score=147.98 Aligned_cols=122 Identities=25% Similarity=0.436 Sum_probs=98.0
Q ss_pred CCCccccccCChhHHH---HHHHHHHhh-----h-cCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC------
Q 035959 202 HPSTFDTLAMDTDMKK---MIMDDLERA-----W-KRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG------ 266 (338)
Q Consensus 202 ~p~~f~~l~~~~~~k~---~i~~~l~~~-----~-~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~------ 266 (338)
...+|++++++++.|+ -|++.|..| | ++++|+|||||||||++|+|+|++++.+++.+..+++..
T Consensus 116 ~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdg 195 (368)
T COG1223 116 SDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDG 195 (368)
T ss_pred ccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhH
Confidence 3458999999988774 466777762 3 589999999999999999999999999999999988763
Q ss_pred chHHHHHHHhcC--CCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcCCCC
Q 035959 267 NKHLRKVLIATE--NKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSSCG 333 (338)
Q Consensus 267 ~~~l~~~l~~~~--~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s~~g 333 (338)
...++++...+. .|||+||||+|+++- +|+=++- .+...-.++.||..|||+-..+|
T Consensus 196 ar~Ihely~rA~~~aPcivFiDE~DAiaL--dRryQel--------RGDVsEiVNALLTelDgi~eneG 254 (368)
T COG1223 196 ARRIHELYERARKAAPCIVFIDELDAIAL--DRRYQEL--------RGDVSEIVNALLTELDGIKENEG 254 (368)
T ss_pred HHHHHHHHHHHHhcCCeEEEehhhhhhhh--hhhHHHh--------cccHHHHHHHHHHhccCcccCCc
Confidence 345777877775 899999999999976 6644332 34456789999999999986554
No 14
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=2.3e-17 Score=148.70 Aligned_cols=113 Identities=27% Similarity=0.451 Sum_probs=92.1
Q ss_pred cccCCCCCccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC-----chHH-
Q 035959 197 SAILDHPSTFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG-----NKHL- 270 (338)
Q Consensus 197 ~~~~~~p~~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~-----~~~l- 270 (338)
.+|..||..|+.++...+ .|+|||||||||||.|++|+|.+....++.++.+++.. .+.+
T Consensus 164 eLPvKHPELF~aLGIaQP--------------KGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmv 229 (404)
T KOG0728|consen 164 ELPVKHPELFEALGIAQP--------------KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMV 229 (404)
T ss_pred hccccCHHHHHhcCCCCC--------------cceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHH
Confidence 578999999999987654 89999999999999999999999999999999988762 3344
Q ss_pred HHHHHhc--CCCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcCC
Q 035959 271 RKVLIAT--ENKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSS 331 (338)
Q Consensus 271 ~~~l~~~--~~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s~ 331 (338)
+.+|.-+ ..|+|||+||||++.. .|..++. +.++..++|+-.|||++||.-+.
T Consensus 230 relfvmarehapsiifmdeidsigs--~r~e~~~------ggdsevqrtmlellnqldgfeat 284 (404)
T KOG0728|consen 230 RELFVMAREHAPSIIFMDEIDSIGS--SRVESGS------GGDSEVQRTMLELLNQLDGFEAT 284 (404)
T ss_pred HHHHHHHHhcCCceEeeeccccccc--ccccCCC------CccHHHHHHHHHHHHhccccccc
Confidence 4444433 3899999999999988 5544333 23567899999999999999865
No 15
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=4.4e-16 Score=159.95 Aligned_cols=122 Identities=26% Similarity=0.372 Sum_probs=100.7
Q ss_pred CCccccccCChhHHHHHHHHHHh------------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcC-----
Q 035959 203 PSTFDTLAMDTDMKKMIMDDLER------------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVE----- 265 (338)
Q Consensus 203 p~~f~~l~~~~~~k~~i~~~l~~------------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~----- 265 (338)
+-+|+++++-++.|++|.+-+.- ..++|+||+||||||||.||+|+|.+.|.|++.++.++..
T Consensus 307 ~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g 386 (774)
T KOG0731|consen 307 GVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVG 386 (774)
T ss_pred CCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcc
Confidence 35899999999999887765554 4689999999999999999999999999999999999865
Q ss_pred -CchHHHHHHHhcC--CCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcCC
Q 035959 266 -GNKHLRKVLIATE--NKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSS 331 (338)
Q Consensus 266 -~~~~l~~~l~~~~--~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s~ 331 (338)
..+.++.+|..+. .|||++|||||.+.. .|.+... .+.+.....||++||-.|||..+.
T Consensus 387 ~~asrvr~lf~~ar~~aP~iifideida~~~--~r~G~~~-----~~~~~e~e~tlnQll~emDgf~~~ 448 (774)
T KOG0731|consen 387 VGASRVRDLFPLARKNAPSIIFIDEIDAVGR--KRGGKGT-----GGGQDEREQTLNQLLVEMDGFETS 448 (774)
T ss_pred cchHHHHHHHHHhhccCCeEEEecccccccc--ccccccc-----CCCChHHHHHHHHHHHHhcCCcCC
Confidence 2567888888775 799999999999987 6642111 122445678999999999999876
No 16
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.64 E-value=5e-16 Score=148.25 Aligned_cols=93 Identities=17% Similarity=0.189 Sum_probs=75.5
Q ss_pred hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC------chHHHHHHHhcC-------CCcEEEEcCCCccC
Q 035959 226 AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG------NKHLRKVLIATE-------NKSILVVGDIDCCT 292 (338)
Q Consensus 226 ~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~------~~~l~~~l~~~~-------~~~Il~iDeiD~~~ 292 (338)
..+++++||||||||||.+++|+|+++|.+++.++..++.+ +..++++|..+. +||||||||||.++
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~ 225 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGA 225 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcC
Confidence 56789999999999999999999999999999999998873 567888887653 69999999999998
Q ss_pred CcccccccccCCCCCCCCCCcchhhHHHHHHHhcCC
Q 035959 293 ELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGL 328 (338)
Q Consensus 293 ~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl 328 (338)
+ .|+.... ....++..+.|||.+||+
T Consensus 226 g--~r~~~~~--------tv~~qiV~~tLLnl~D~p 251 (413)
T PLN00020 226 G--RFGTTQY--------TVNNQMVNGTLMNIADNP 251 (413)
T ss_pred C--CCCCCCc--------chHHHHHHHHHHHHhcCC
Confidence 8 5542211 123456668999999874
No 17
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.61 E-value=2.6e-15 Score=150.52 Aligned_cols=115 Identities=18% Similarity=0.287 Sum_probs=90.7
Q ss_pred CCccccccCChhHHHHHHHHHHh----------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcC------C
Q 035959 203 PSTFDTLAMDTDMKKMIMDDLER----------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVE------G 266 (338)
Q Consensus 203 p~~f~~l~~~~~~k~~i~~~l~~----------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~------~ 266 (338)
..+|+++++-+.+|+.+.+.... +.++|+|||||||||||++++|+|++++.+++.++++.+. +
T Consensus 224 ~~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGes 303 (489)
T CHL00195 224 NEKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGES 303 (489)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChH
Confidence 34799999988888877654322 4578999999999999999999999999999999987654 2
Q ss_pred chHHHHHHHhc--CCCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcC
Q 035959 267 NKHLRKVLIAT--ENKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDG 327 (338)
Q Consensus 267 ~~~l~~~l~~~--~~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDg 327 (338)
+..++++|..+ .+||||+|||||.++. ++.... ..+...+.++.||+.|+.
T Consensus 304 e~~l~~~f~~A~~~~P~IL~IDEID~~~~--~~~~~~--------d~~~~~rvl~~lL~~l~~ 356 (489)
T CHL00195 304 ESRMRQMIRIAEALSPCILWIDEIDKAFS--NSESKG--------DSGTTNRVLATFITWLSE 356 (489)
T ss_pred HHHHHHHHHHHHhcCCcEEEehhhhhhhc--cccCCC--------CchHHHHHHHHHHHHHhc
Confidence 45678888754 4899999999999876 332221 134567889999999985
No 18
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=2.6e-15 Score=151.23 Aligned_cols=123 Identities=20% Similarity=0.345 Sum_probs=101.5
Q ss_pred cccCCCCC--ccccccCChhHHHHHHHHHHh-------------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEec
Q 035959 197 SAILDHPS--TFDTLAMDTDMKKMIMDDLER-------------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLEL 261 (338)
Q Consensus 197 ~~~~~~p~--~f~~l~~~~~~k~~i~~~l~~-------------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~ 261 (338)
.+.+..+. .|+++++-.+.|+.+.+-+.- .-+.|+|||||||||||+|+.|+|..++..++.+-.
T Consensus 655 ~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKG 734 (952)
T KOG0735|consen 655 GIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKG 734 (952)
T ss_pred hccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecC
Confidence 34444443 678888888888877777765 235689999999999999999999999999999988
Q ss_pred CCcC------CchHHHHHHHhcC--CCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcC
Q 035959 262 SSVE------GNKHLRKVLIATE--NKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWS 330 (338)
Q Consensus 262 ~~~~------~~~~l~~~l~~~~--~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s 330 (338)
.++. ++..++.+|.++. +|||||+||+|++++ +|+.++. ++..+.+++||..|||.-.
T Consensus 735 PElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAP--kRGhDsT---------GVTDRVVNQlLTelDG~Eg 800 (952)
T KOG0735|consen 735 PELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAP--KRGHDST---------GVTDRVVNQLLTELDGAEG 800 (952)
T ss_pred HHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCc--ccCCCCC---------CchHHHHHHHHHhhccccc
Confidence 8765 4677999998874 899999999999998 7765544 6788999999999999865
No 19
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.1e-15 Score=138.98 Aligned_cols=119 Identities=27% Similarity=0.377 Sum_probs=92.7
Q ss_pred ccccCCCCCccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC-----chHH
Q 035959 196 QSAILDHPSTFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG-----NKHL 270 (338)
Q Consensus 196 ~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~-----~~~l 270 (338)
.++|+-||..|-.++.+|+ .|+|||||||||||.+++|+||..+.-++.+=.+++.. ...+
T Consensus 193 ve~pll~perfv~lgidpp--------------kgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarm 258 (435)
T KOG0729|consen 193 VELPLLHPERFVNLGIDPP--------------KGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARM 258 (435)
T ss_pred HhccccCHHHHhhcCCCCC--------------CceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHH
Confidence 3567788888888888775 89999999999999999999999999999998887652 3444
Q ss_pred -HHHHHhc--CCCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcCCCCCccc
Q 035959 271 -RKVLIAT--ENKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSSCGDERI 337 (338)
Q Consensus 271 -~~~l~~~--~~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s~~g~eri 337 (338)
+.+|.-+ .+.||||+||||++.. .|-.+.. +.+...++|+-.|+|++||... .|+..+
T Consensus 259 vrelf~martkkaciiffdeidaigg--arfddg~------ggdnevqrtmleli~qldgfdp-rgnikv 319 (435)
T KOG0729|consen 259 VRELFEMARTKKACIIFFDEIDAIGG--ARFDDGA------GGDNEVQRTMLELINQLDGFDP-RGNIKV 319 (435)
T ss_pred HHHHHHHhcccceEEEEeeccccccC--ccccCCC------CCcHHHHHHHHHHHHhccCCCC-CCCeEE
Confidence 4444433 3679999999999988 6644432 2245679999999999999984 476554
No 20
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=2.4e-15 Score=138.68 Aligned_cols=114 Identities=25% Similarity=0.420 Sum_probs=88.2
Q ss_pred ccccccCChhHHHHHHHHHHh-------------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC-----
Q 035959 205 TFDTLAMDTDMKKMIMDDLER-------------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG----- 266 (338)
Q Consensus 205 ~f~~l~~~~~~k~~i~~~l~~-------------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~----- 266 (338)
.|+++++-+..|+.+.+.+.- || +|+|||||||||||.|++|+|-+.+..++.++-+++.+
T Consensus 131 kWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~Pw-rgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGE 209 (439)
T KOG0739|consen 131 KWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPW-RGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGE 209 (439)
T ss_pred chhhhccchhHHHHHHhheeecccchhhhcCCCCcc-eeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhcc
Confidence 456677777777776665544 34 79999999999999999999999999999999988774
Q ss_pred chHH-HHHHHhc--CCCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcC
Q 035959 267 NKHL-RKVLIAT--ENKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWS 330 (338)
Q Consensus 267 ~~~l-~~~l~~~--~~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s 330 (338)
.+.| ..+|.-+ .+|+||||||||.+.. .|+..+ ...+++.-..||-+|.|+--
T Consensus 210 SEkLVknLFemARe~kPSIIFiDEiDslcg--~r~enE---------seasRRIKTEfLVQMqGVG~ 265 (439)
T KOG0739|consen 210 SEKLVKNLFEMARENKPSIIFIDEIDSLCG--SRSENE---------SEASRRIKTEFLVQMQGVGN 265 (439)
T ss_pred HHHHHHHHHHHHHhcCCcEEEeehhhhhcc--CCCCCc---------hHHHHHHHHHHHHhhhcccc
Confidence 3344 4444433 3899999999998877 554433 34678999999999999964
No 21
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.59 E-value=3.5e-15 Score=146.34 Aligned_cols=122 Identities=26% Similarity=0.318 Sum_probs=94.1
Q ss_pred CCCccccccCChhHHHHHHHHHHh-------------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC--
Q 035959 202 HPSTFDTLAMDTDMKKMIMDDLER-------------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG-- 266 (338)
Q Consensus 202 ~p~~f~~l~~~~~~k~~i~~~l~~-------------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~-- 266 (338)
+..+|+++++.+..++++.+.+.. .+++|+|||||||||||++++++|++++.+++.+..+++..
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~ 219 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKY 219 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHh
Confidence 345789999998888888877653 35789999999999999999999999999999988765431
Q ss_pred ----chHHHHHHHhc--CCCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcCC
Q 035959 267 ----NKHLRKVLIAT--ENKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSS 331 (338)
Q Consensus 267 ----~~~l~~~l~~~--~~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s~ 331 (338)
...++.+|..+ ..|+||||||||.++. +|.+... +.+...++.+..||+.|||+...
T Consensus 220 ~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~--~r~~~~~------~~d~~~~r~l~~LL~~ld~~~~~ 282 (398)
T PTZ00454 220 LGEGPRMVRDVFRLARENAPSIIFIDEVDSIAT--KRFDAQT------GADREVQRILLELLNQMDGFDQT 282 (398)
T ss_pred cchhHHHHHHHHHHHHhcCCeEEEEECHhhhcc--ccccccC------CccHHHHHHHHHHHHHhhccCCC
Confidence 23456666554 4789999999999987 5533221 11234578899999999998754
No 22
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.58 E-value=8.7e-15 Score=131.45 Aligned_cols=94 Identities=23% Similarity=0.329 Sum_probs=70.2
Q ss_pred CCCCCccccccCChhHHHHHHHHHHhhhc-----CceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCCchHHHHHH
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLERAWK-----RGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKVL 274 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~~~~-----~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~~~~l~~~l 274 (338)
.-.|.+|++++++++++..+.-.+..... ..+|||||||+|||+||..+|++++.++..++...+....++..++
T Consensus 17 ~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl~~il 96 (233)
T PF05496_consen 17 RLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDLAAIL 96 (233)
T ss_dssp HTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHHHHHH
T ss_pred hcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHHHHHH
Confidence 35688999999999998876655554332 3589999999999999999999999999999988777788899999
Q ss_pred HhcCCCcEEEEcCCCccCC
Q 035959 275 IATENKSILVVGDIDCCTE 293 (338)
Q Consensus 275 ~~~~~~~Il~iDeiD~~~~ 293 (338)
..+..+.||||||||.+..
T Consensus 97 ~~l~~~~ILFIDEIHRlnk 115 (233)
T PF05496_consen 97 TNLKEGDILFIDEIHRLNK 115 (233)
T ss_dssp HT--TT-EEEECTCCC--H
T ss_pred HhcCCCcEEEEechhhccH
Confidence 9999999999999999954
No 23
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.58 E-value=4.4e-15 Score=150.09 Aligned_cols=123 Identities=26% Similarity=0.379 Sum_probs=95.2
Q ss_pred CCCCccccccCChhHHHHHHHHHHh------------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcC---
Q 035959 201 DHPSTFDTLAMDTDMKKMIMDDLER------------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVE--- 265 (338)
Q Consensus 201 ~~p~~f~~l~~~~~~k~~i~~~l~~------------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~--- 265 (338)
.+..+|+++++.++.|+++.+.+.. ..++|+|||||||||||++++++|++++.+++.++++++.
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~ 128 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 128 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHH
Confidence 3455899999999888777654442 3467999999999999999999999999999999887653
Q ss_pred ---CchHHHHHHHhcC--CCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcCC
Q 035959 266 ---GNKHLRKVLIATE--NKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSS 331 (338)
Q Consensus 266 ---~~~~l~~~l~~~~--~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s~ 331 (338)
....++++|..+. .|+||||||||.+.. +|..... +.+.....+++.||+.|||+.+.
T Consensus 129 ~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~--~r~~~~~------~~~~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 129 VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGR--QRGAGLG------GGNDEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhh--ccccCcC------CccHHHHHHHHHHHhhhccccCC
Confidence 2456788887763 689999999999987 5533211 11234468899999999999654
No 24
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.57 E-value=6.2e-15 Score=147.93 Aligned_cols=120 Identities=22% Similarity=0.329 Sum_probs=87.3
Q ss_pred CCCccccccCChhHHHHHHHHHHh-------------hhcCceeeeCCCCCCcHHHHHHHHHHhCCc----------EEE
Q 035959 202 HPSTFDTLAMDTDMKKMIMDDLER-------------AWKRGYLLFGPPGTGKSSLIAAMANYLHFD----------VYD 258 (338)
Q Consensus 202 ~p~~f~~l~~~~~~k~~i~~~l~~-------------~~~~g~LL~GppGtGKT~l~~aia~~l~~~----------~~~ 258 (338)
++.+|+++++-+..++++.+.+.. ++++|+|||||||||||++++++|++++.+ ++.
T Consensus 177 p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~ 256 (512)
T TIGR03689 177 PDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN 256 (512)
T ss_pred CCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe
Confidence 356899999888888888877654 467899999999999999999999998755 223
Q ss_pred EecCCcCC------chHHHHHHHhcC------CCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhc
Q 035959 259 LELSSVEG------NKHLRKVLIATE------NKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTD 326 (338)
Q Consensus 259 l~~~~~~~------~~~l~~~l~~~~------~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iD 326 (338)
+..+++.+ ...++.+|..+. .++||||||+|.++. .|+.... ....+..+++||+.||
T Consensus 257 v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~--~R~~~~s--------~d~e~~il~~LL~~LD 326 (512)
T TIGR03689 257 IKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFR--TRGSGVS--------SDVETTVVPQLLSELD 326 (512)
T ss_pred ccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhc--ccCCCcc--------chHHHHHHHHHHHHhc
Confidence 33333321 234556655442 589999999999987 5533211 1234678899999999
Q ss_pred CCcCC
Q 035959 327 GLWSS 331 (338)
Q Consensus 327 gl~s~ 331 (338)
|+.+.
T Consensus 327 gl~~~ 331 (512)
T TIGR03689 327 GVESL 331 (512)
T ss_pred ccccC
Confidence 99864
No 25
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1e-14 Score=147.32 Aligned_cols=122 Identities=26% Similarity=0.370 Sum_probs=98.9
Q ss_pred CCCccccccCChhHHHHHHHH---HHh---------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcC----
Q 035959 202 HPSTFDTLAMDTDMKKMIMDD---LER---------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVE---- 265 (338)
Q Consensus 202 ~p~~f~~l~~~~~~k~~i~~~---l~~---------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~---- 265 (338)
..-+|.++++.++.|+++.+- |.. ..++|+||+||||||||.|++|+|.+.+.|++.++.++..
T Consensus 145 ~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfV 224 (596)
T COG0465 145 VKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFV 224 (596)
T ss_pred cCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhc
Confidence 345899999988888766554 443 3478999999999999999999999999999999999865
Q ss_pred --CchHHHHHHHhcC--CCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcCC
Q 035959 266 --GNKHLRKVLIATE--NKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSS 331 (338)
Q Consensus 266 --~~~~l~~~l~~~~--~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s~ 331 (338)
..+..+.+|.++. .|||+||||||++.. .|..... +.+.....||++||..|||.-+.
T Consensus 225 GvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr--~Rg~g~G------ggnderEQTLNQlLvEmDGF~~~ 286 (596)
T COG0465 225 GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGR--QRGAGLG------GGNDEREQTLNQLLVEMDGFGGN 286 (596)
T ss_pred CCCcHHHHHHHHHhhccCCCeEEEehhhhccc--ccCCCCC------CCchHHHHHHHHHHhhhccCCCC
Confidence 3678899999886 599999999999987 5543321 22445567999999999999753
No 26
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.55 E-value=1.4e-14 Score=142.15 Aligned_cols=120 Identities=24% Similarity=0.348 Sum_probs=92.6
Q ss_pred CCccccccCChhHHHHHHHHHHh-------------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC---
Q 035959 203 PSTFDTLAMDTDMKKMIMDDLER-------------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG--- 266 (338)
Q Consensus 203 p~~f~~l~~~~~~k~~i~~~l~~-------------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~--- 266 (338)
..+|+++++-++.++++.+.+.. ..++|+|||||||||||++++++|++++.+++.++++++..
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~ 206 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFI 206 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhc
Confidence 34788999988888888877654 34678999999999999999999999999999998887642
Q ss_pred ---chHHHHHHHhcC--CCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcC
Q 035959 267 ---NKHLRKVLIATE--NKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWS 330 (338)
Q Consensus 267 ---~~~l~~~l~~~~--~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s 330 (338)
...++.+|..+. .++||||||||.+.. .|.+.... .+...+.++..||+.+||+.+
T Consensus 207 g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~--~r~~~~~~------~~~~~~~~l~~lL~~ld~~~~ 267 (389)
T PRK03992 207 GEGARLVRELFELAREKAPSIIFIDEIDAIAA--KRTDSGTS------GDREVQRTLMQLLAEMDGFDP 267 (389)
T ss_pred cchHHHHHHHHHHHHhcCCeEEEEechhhhhc--ccccCCCC------ccHHHHHHHHHHHHhccccCC
Confidence 234566666543 689999999999987 55433221 123456789999999999864
No 27
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.52 E-value=1.7e-14 Score=142.75 Aligned_cols=123 Identities=26% Similarity=0.310 Sum_probs=92.5
Q ss_pred CCCCccccccCChhHHHHHHHHHHh-------------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC-
Q 035959 201 DHPSTFDTLAMDTDMKKMIMDDLER-------------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG- 266 (338)
Q Consensus 201 ~~p~~f~~l~~~~~~k~~i~~~l~~-------------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~- 266 (338)
.++.+|+++++-+..++++.+.+.. .+++|+|||||||||||++++++|+.++.+++.+..+++..
T Consensus 177 ~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k 256 (438)
T PTZ00361 177 APLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQK 256 (438)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhh
Confidence 3456888888888888777776653 34679999999999999999999999999999998877642
Q ss_pred -----chHHHHHHHhc--CCCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcCC
Q 035959 267 -----NKHLRKVLIAT--ENKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSS 331 (338)
Q Consensus 267 -----~~~l~~~l~~~--~~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s~ 331 (338)
...++.+|..+ ..++||||||||.+.. +|..... +.....+.++..||+.|||+...
T Consensus 257 ~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~--kR~~~~s------gg~~e~qr~ll~LL~~Ldg~~~~ 320 (438)
T PTZ00361 257 YLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGT--KRYDATS------GGEKEIQRTMLELLNQLDGFDSR 320 (438)
T ss_pred hcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhc--cCCCCCC------cccHHHHHHHHHHHHHHhhhccc
Confidence 22355666544 3789999999999986 5543222 11234567889999999998643
No 28
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.52 E-value=3.1e-14 Score=150.19 Aligned_cols=117 Identities=23% Similarity=0.356 Sum_probs=95.5
Q ss_pred CccccccCChhHHHHHHHHHHh-------------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcC-----
Q 035959 204 STFDTLAMDTDMKKMIMDDLER-------------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVE----- 265 (338)
Q Consensus 204 ~~f~~l~~~~~~k~~i~~~l~~-------------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~----- 265 (338)
.+|+++++.+..|+.+.+.+.. ..++|+|||||||||||++++|+|++++.+++.++.+++.
T Consensus 450 ~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vG 529 (733)
T TIGR01243 450 VRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVG 529 (733)
T ss_pred cchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccC
Confidence 3788999999999888887653 3567899999999999999999999999999999987754
Q ss_pred -CchHHHHHHHhcC--CCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcC
Q 035959 266 -GNKHLRKVLIATE--NKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWS 330 (338)
Q Consensus 266 -~~~~l~~~l~~~~--~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s 330 (338)
++..++++|..+. .++||||||||.+++ .|+.... .....+.++.||+.|||+..
T Consensus 530 ese~~i~~~f~~A~~~~p~iifiDEid~l~~--~r~~~~~--------~~~~~~~~~~lL~~ldg~~~ 587 (733)
T TIGR01243 530 ESEKAIREIFRKARQAAPAIIFFDEIDAIAP--ARGARFD--------TSVTDRIVNQLLTEMDGIQE 587 (733)
T ss_pred cHHHHHHHHHHHHHhcCCEEEEEEChhhhhc--cCCCCCC--------ccHHHHHHHHHHHHhhcccC
Confidence 2456888887764 789999999999987 5543222 23457899999999999864
No 29
>CHL00176 ftsH cell division protein; Validated
Probab=99.52 E-value=3.7e-14 Score=146.34 Aligned_cols=123 Identities=26% Similarity=0.375 Sum_probs=93.6
Q ss_pred CCCCccccccCChhHHHHHHHHHHh------------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcC---
Q 035959 201 DHPSTFDTLAMDTDMKKMIMDDLER------------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVE--- 265 (338)
Q Consensus 201 ~~p~~f~~l~~~~~~k~~i~~~l~~------------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~--- 265 (338)
...-+|+++++.++.++++.+.+.. ..++|+||+||||||||++++++|++++.+++.++++++.
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~ 256 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMF 256 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHh
Confidence 3345899999988888766554432 2467999999999999999999999999999999887654
Q ss_pred ---CchHHHHHHHhcC--CCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcCC
Q 035959 266 ---GNKHLRKVLIATE--NKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSS 331 (338)
Q Consensus 266 ---~~~~l~~~l~~~~--~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s~ 331 (338)
....++.+|..+. .||||||||||++.. .|..... +.+.....++..||+.|||+...
T Consensus 257 ~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~--~r~~~~~------~~~~e~~~~L~~LL~~~dg~~~~ 319 (638)
T CHL00176 257 VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGR--QRGAGIG------GGNDEREQTLNQLLTEMDGFKGN 319 (638)
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhh--cccCCCC------CCcHHHHHHHHHHHhhhccccCC
Confidence 2345677777664 789999999999976 5532211 11334568899999999998754
No 30
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=5e-14 Score=142.35 Aligned_cols=118 Identities=25% Similarity=0.365 Sum_probs=95.8
Q ss_pred CCccccccCChhHHHHHHHHHHh-------------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC---
Q 035959 203 PSTFDTLAMDTDMKKMIMDDLER-------------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG--- 266 (338)
Q Consensus 203 p~~f~~l~~~~~~k~~i~~~l~~-------------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~--- 266 (338)
.-+|+++++....|+.+.+.+.. ..++|+|||||||||||+|++|+|++++.+++.++.+++.+
T Consensus 238 ~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~v 317 (494)
T COG0464 238 DVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWV 317 (494)
T ss_pred CcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhcccc
Confidence 34788888877777777766655 23468999999999999999999999999999999997764
Q ss_pred ---chHHHHHHHhcC--CCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcCC
Q 035959 267 ---NKHLRKVLIATE--NKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSS 331 (338)
Q Consensus 267 ---~~~l~~~l~~~~--~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s~ 331 (338)
+..++++|..+. .+|||||||+|.+++ .|..... +...+.+++||..|||+-..
T Consensus 318 Gesek~ir~~F~~A~~~~p~iiFiDEiDs~~~--~r~~~~~---------~~~~r~~~~lL~~~d~~e~~ 376 (494)
T COG0464 318 GESEKNIRELFEKARKLAPSIIFIDEIDSLAS--GRGPSED---------GSGRRVVGQLLTELDGIEKA 376 (494)
T ss_pred chHHHHHHHHHHHHHcCCCcEEEEEchhhhhc--cCCCCCc---------hHHHHHHHHHHHHhcCCCcc
Confidence 567888888875 799999999999998 6644332 22369999999999999754
No 31
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=4.1e-14 Score=131.13 Aligned_cols=112 Identities=28% Similarity=0.423 Sum_probs=86.8
Q ss_pred cccCCCCCccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC-----chH-H
Q 035959 197 SAILDHPSTFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG-----NKH-L 270 (338)
Q Consensus 197 ~~~~~~p~~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~-----~~~-l 270 (338)
.+|+..|..|-.+...+ +.|++||||||||||.+++++|..+|.+++.+..+++.+ .+. +
T Consensus 149 elpl~np~lf~rvgIk~--------------Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlI 214 (388)
T KOG0651|consen 149 ELPLTNPELFLRVGIKP--------------PKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLI 214 (388)
T ss_pred EeeccCchhccccCCCC--------------CceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHH
Confidence 35566666666655544 489999999999999999999999999999999988874 223 4
Q ss_pred HHHHHhcC--CCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcC
Q 035959 271 RKVLIATE--NKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWS 330 (338)
Q Consensus 271 ~~~l~~~~--~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s 330 (338)
++.+..+. .+||||+||||++.. .|..+.. ..+...++||-.|||+|||.-.
T Consensus 215 Remf~yA~~~~pciifmdeiDAigG--Rr~se~T------s~dreiqrTLMeLlnqmdgfd~ 268 (388)
T KOG0651|consen 215 RDMFRYAREVIPCIIFMDEIDAIGG--RRFSEGT------SSDREIQRTLMELLNQMDGFDT 268 (388)
T ss_pred HHHHHHHhhhCceEEeehhhhhhcc--EEecccc------chhHHHHHHHHHHHHhhccchh
Confidence 55665554 689999999999987 4533322 2356779999999999999864
No 32
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=5.4e-14 Score=133.19 Aligned_cols=122 Identities=24% Similarity=0.420 Sum_probs=94.2
Q ss_pred ccccccCChhHHHHHHHHHHh--------------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC----
Q 035959 205 TFDTLAMDTDMKKMIMDDLER--------------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG---- 266 (338)
Q Consensus 205 ~f~~l~~~~~~k~~i~~~l~~--------------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~---- 266 (338)
+|+++++-+.+++.+.+.+.- ..++|+|||||||||||.+|+|+|.+.|..++.|..+.+.+
T Consensus 90 ~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWfg 169 (386)
T KOG0737|consen 90 SFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWFG 169 (386)
T ss_pred ehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhHH
Confidence 677777777766666655443 34689999999999999999999999999999999998875
Q ss_pred -chHHHHHHHhcC---CCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcCCCCCcccC
Q 035959 267 -NKHLRKVLIATE---NKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSSCGDERII 338 (338)
Q Consensus 267 -~~~l~~~l~~~~---~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s~~g~erii 338 (338)
...+.+.++..+ +|+||+|||||.++. .| +.. .+......-.+|...=||+.|. +++||+
T Consensus 170 E~eKlv~AvFslAsKl~P~iIFIDEvds~L~--~R-~s~--------dHEa~a~mK~eFM~~WDGl~s~-~~~rVl 233 (386)
T KOG0737|consen 170 EAQKLVKAVFSLASKLQPSIIFIDEVDSFLG--QR-RST--------DHEATAMMKNEFMALWDGLSSK-DSERVL 233 (386)
T ss_pred HHHHHHHHHHhhhhhcCcceeehhhHHHHHh--hc-ccc--------hHHHHHHHHHHHHHHhccccCC-CCceEE
Confidence 234545544444 799999999999987 55 221 2456678888999999999976 556764
No 33
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=5.9e-14 Score=130.75 Aligned_cols=120 Identities=24% Similarity=0.422 Sum_probs=90.7
Q ss_pred ccccccCChhHHHHHHHHHHh--------------hhcCceeeeCCCCCCcHHHHHHHHHHhC---------CcEEEEec
Q 035959 205 TFDTLAMDTDMKKMIMDDLER--------------AWKRGYLLFGPPGTGKSSLIAAMANYLH---------FDVYDLEL 261 (338)
Q Consensus 205 ~f~~l~~~~~~k~~i~~~l~~--------------~~~~g~LL~GppGtGKT~l~~aia~~l~---------~~~~~l~~ 261 (338)
.|++++.+.++|++++..... .|.|-+|||||||||||+|++|+|.++- -.++++++
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 568899999999999988776 5788899999999999999999999983 24567777
Q ss_pred CCcCC------chHHHHHHHhcC-------CCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCC
Q 035959 262 SSVEG------NKHLRKVLIATE-------NKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGL 328 (338)
Q Consensus 262 ~~~~~------~~~l~~~l~~~~-------~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl 328 (338)
.++.+ ..-+.++|++.. .-.+++|||+++++. .|......++ +...-+.++.||.+||.+
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~--aR~s~~S~~E-----psDaIRvVNalLTQlDrl 292 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAA--ARTSASSRNE-----PSDAIRVVNALLTQLDRL 292 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHH--HHHhhhcCCC-----CchHHHHHHHHHHHHHHh
Confidence 76653 233455555542 345788999999987 6644433222 334578999999999999
Q ss_pred cCC
Q 035959 329 WSS 331 (338)
Q Consensus 329 ~s~ 331 (338)
-.+
T Consensus 293 K~~ 295 (423)
T KOG0744|consen 293 KRY 295 (423)
T ss_pred ccC
Confidence 754
No 34
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.45 E-value=9.2e-14 Score=114.35 Aligned_cols=90 Identities=30% Similarity=0.469 Sum_probs=72.9
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC------chHHHHHHHhc--CC-CcEEEEcCCCccCCcccccccc
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG------NKHLRKVLIAT--EN-KSILVVGDIDCCTELQDRSAQA 301 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~------~~~l~~~l~~~--~~-~~Il~iDeiD~~~~~~~r~~~~ 301 (338)
+||+||||||||++++++|+.++.+++.+++.++.+ ...+..++..+ .. ++||+|||+|.+.. +. ...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~--~~-~~~ 77 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFP--KS-QPS 77 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSH--HC-STS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccc--cc-ccc
Confidence 589999999999999999999999999999998762 34567777765 24 89999999999987 33 111
Q ss_pred cCCCCCCCCCCcchhhHHHHHHHhcCCcCC
Q 035959 302 RTASPDWHSPKRDQITLSGLLNFTDGLWSS 331 (338)
Q Consensus 302 ~~~~~~~~~~~~~~~~ls~lLn~iDgl~s~ 331 (338)
........+..|++.||.....
T Consensus 78 --------~~~~~~~~~~~L~~~l~~~~~~ 99 (132)
T PF00004_consen 78 --------SSSFEQRLLNQLLSLLDNPSSK 99 (132)
T ss_dssp --------SSHHHHHHHHHHHHHHHTTTTT
T ss_pred --------cccccccccceeeecccccccc
Confidence 1345678899999999998865
No 35
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.44 E-value=2.9e-13 Score=124.36 Aligned_cols=93 Identities=28% Similarity=0.385 Sum_probs=84.8
Q ss_pred CCCCccccccCChhHHHHHHHHHHhhhcC-----ceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCCchHHHHHHH
Q 035959 201 DHPSTFDTLAMDTDMKKMIMDDLERAWKR-----GYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKVLI 275 (338)
Q Consensus 201 ~~p~~f~~l~~~~~~k~~i~~~l~~~~~~-----g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~~~~l~~~l~ 275 (338)
-.|+.|+++++++.+|+.+.-.+.++..| .+|||||||.|||+||..+|+++|..+...+...+....+|..++.
T Consensus 20 lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~gDlaaiLt 99 (332)
T COG2255 20 LRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPGDLAAILT 99 (332)
T ss_pred cCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChhhHHHHHh
Confidence 45889999999999999988888875554 4899999999999999999999999998888888888899999999
Q ss_pred hcCCCcEEEEcCCCccCC
Q 035959 276 ATENKSILVVGDIDCCTE 293 (338)
Q Consensus 276 ~~~~~~Il~iDeiD~~~~ 293 (338)
.+...+||||||||.+.+
T Consensus 100 ~Le~~DVLFIDEIHrl~~ 117 (332)
T COG2255 100 NLEEGDVLFIDEIHRLSP 117 (332)
T ss_pred cCCcCCeEEEehhhhcCh
Confidence 999999999999999975
No 36
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.43 E-value=3e-13 Score=131.58 Aligned_cols=121 Identities=24% Similarity=0.341 Sum_probs=90.0
Q ss_pred CCCccccccCChhHHHHHHHHHHh-------------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC--
Q 035959 202 HPSTFDTLAMDTDMKKMIMDDLER-------------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG-- 266 (338)
Q Consensus 202 ~p~~f~~l~~~~~~k~~i~~~l~~-------------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~-- 266 (338)
+..+|+++++.+..++++.+.+.. ..++|+|||||||||||++++++|+.++.+++.+...++..
T Consensus 117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~ 196 (364)
T TIGR01242 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKY 196 (364)
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHh
Confidence 344788999989888888887754 23678999999999999999999999999988887665432
Q ss_pred ----chHHHHHHHhc--CCCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcC
Q 035959 267 ----NKHLRKVLIAT--ENKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWS 330 (338)
Q Consensus 267 ----~~~l~~~l~~~--~~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s 330 (338)
...++.++..+ ..++||+|||+|.+.. .|.+... +.+...+.++..+|+.+||+..
T Consensus 197 ~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~--~~~~~~~------~~~~~~~~~l~~ll~~ld~~~~ 258 (364)
T TIGR01242 197 IGEGARLVREIFELAKEKAPSIIFIDEIDAIAA--KRTDSGT------SGDREVQRTLMQLLAELDGFDP 258 (364)
T ss_pred hhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhcc--ccccCCC------CccHHHHHHHHHHHHHhhCCCC
Confidence 12345555544 3689999999999976 5533222 1123456789999999999753
No 37
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.41 E-value=2.7e-13 Score=149.04 Aligned_cols=95 Identities=20% Similarity=0.245 Sum_probs=72.8
Q ss_pred hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCCc--------------------------------------
Q 035959 226 AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGN-------------------------------------- 267 (338)
Q Consensus 226 ~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~~-------------------------------------- 267 (338)
..++|+||+||||||||.||+|+|.+++.+++.++++++...
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n~ 1707 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNA 1707 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcch
Confidence 446999999999999999999999999999999988765420
Q ss_pred ---------h--HHHHHHHhc--CCCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcCCCCC
Q 035959 268 ---------K--HLRKVLIAT--ENKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSSCGD 334 (338)
Q Consensus 268 ---------~--~l~~~l~~~--~~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s~~g~ 334 (338)
. .++.+|..+ .+||||+|||||.+.. + .....+++.|||.|||....|..
T Consensus 1708 ~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~--~---------------ds~~ltL~qLLneLDg~~~~~s~ 1770 (2281)
T CHL00206 1708 LTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNV--N---------------ESNYLSLGLLVNSLSRDCERCST 1770 (2281)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCC--C---------------ccceehHHHHHHHhccccccCCC
Confidence 1 145556655 3799999999999975 1 11246799999999998644444
Q ss_pred ccc
Q 035959 335 ERI 337 (338)
Q Consensus 335 eri 337 (338)
+.|
T Consensus 1771 ~~V 1773 (2281)
T CHL00206 1771 RNI 1773 (2281)
T ss_pred CCE
Confidence 444
No 38
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=5.1e-13 Score=130.25 Aligned_cols=122 Identities=28% Similarity=0.408 Sum_probs=91.5
Q ss_pred ccccccCChhHHHHHHHHHHh------------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC-----c
Q 035959 205 TFDTLAMDTDMKKMIMDDLER------------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG-----N 267 (338)
Q Consensus 205 ~f~~l~~~~~~k~~i~~~l~~------------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~-----~ 267 (338)
.|+++.+....|+.+.+.+.- +..+|+||.||||||||.|++|+|.+.+..++.+..+++.+ .
T Consensus 151 ~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~~Ge~ 230 (428)
T KOG0740|consen 151 GWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKYVGES 230 (428)
T ss_pred cccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhccChH
Confidence 344555555555554444433 44579999999999999999999999999999999998874 2
Q ss_pred hHHHHHHHhc---CCCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcCCCCCcccC
Q 035959 268 KHLRKVLIAT---ENKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSSCGDERII 338 (338)
Q Consensus 268 ~~l~~~l~~~---~~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s~~g~erii 338 (338)
+.+.+.+... .+|+|+||||||.++. +|... .+..+++....+|..+||..++ ++.||+
T Consensus 231 eK~vralf~vAr~~qPsvifidEidslls--~Rs~~---------e~e~srr~ktefLiq~~~~~s~-~~drvl 292 (428)
T KOG0740|consen 231 EKLVRALFKVARSLQPSVIFIDEIDSLLS--KRSDN---------EHESSRRLKTEFLLQFDGKNSA-PDDRVL 292 (428)
T ss_pred HHHHHHHHHHHHhcCCeEEEechhHHHHh--hcCCc---------ccccchhhhhHHHhhhccccCC-CCCeEE
Confidence 2444444433 3899999999999998 77222 2467789999999999999987 555764
No 39
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.38 E-value=1.1e-12 Score=138.59 Aligned_cols=118 Identities=26% Similarity=0.409 Sum_probs=92.9
Q ss_pred CCccccccCChhHHHHHHHHHHh-------------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC---
Q 035959 203 PSTFDTLAMDTDMKKMIMDDLER-------------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG--- 266 (338)
Q Consensus 203 p~~f~~l~~~~~~k~~i~~~l~~-------------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~--- 266 (338)
..+|+++++.+..++.+.+.+.. ..++|+|||||||||||++++++|++++.+++.+++.++.+
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~ 253 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYY 253 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccc
Confidence 34899999999888888777654 34578999999999999999999999999999998876542
Q ss_pred ---chHHHHHHHhcC--CCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcCC
Q 035959 267 ---NKHLRKVLIATE--NKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSS 331 (338)
Q Consensus 267 ---~~~l~~~l~~~~--~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s~ 331 (338)
...++.+|..+. .++||||||||.+.. +|.... ....+..++.||+.|||+...
T Consensus 254 g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~--~r~~~~---------~~~~~~~~~~Ll~~ld~l~~~ 312 (733)
T TIGR01243 254 GESEERLREIFKEAEENAPSIIFIDEIDAIAP--KREEVT---------GEVEKRVVAQLLTLMDGLKGR 312 (733)
T ss_pred cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcc--cccCCc---------chHHHHHHHHHHHHhhccccC
Confidence 345777777653 679999999999987 443221 123467889999999999653
No 40
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.33 E-value=3.4e-12 Score=132.65 Aligned_cols=122 Identities=25% Similarity=0.369 Sum_probs=92.2
Q ss_pred CCccccccCChhHHHHHHHHHHh------------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcC-----
Q 035959 203 PSTFDTLAMDTDMKKMIMDDLER------------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVE----- 265 (338)
Q Consensus 203 p~~f~~l~~~~~~k~~i~~~l~~------------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~----- 265 (338)
..+|+++.+.+..++++.+.+.. ..++|+||+||||||||++++++|++++.+++.++++++.
T Consensus 148 ~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g 227 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVG 227 (644)
T ss_pred hCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhc
Confidence 45788888877777766554432 2367899999999999999999999999999999987643
Q ss_pred -CchHHHHHHHhcC--CCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcCCC
Q 035959 266 -GNKHLRKVLIATE--NKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSSC 332 (338)
Q Consensus 266 -~~~~l~~~l~~~~--~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s~~ 332 (338)
....++.+|..+. .|+||||||||.+.. .|..... +.+.....+++.||+.|||+.+.+
T Consensus 228 ~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~--~r~~~~~------g~~~~~~~~ln~lL~~mdg~~~~~ 289 (644)
T PRK10733 228 VGASRVRDMFEQAKKAAPCIIFIDEIDAVGR--QRGAGLG------GGHDEREQTLNQMLVEMDGFEGNE 289 (644)
T ss_pred ccHHHHHHHHHHHHhcCCcEEEehhHhhhhh--ccCCCCC------CCchHHHHHHHHHHHhhhcccCCC
Confidence 2345677776653 789999999999986 5543211 112345679999999999997643
No 41
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.4e-12 Score=131.25 Aligned_cols=93 Identities=30% Similarity=0.456 Sum_probs=80.8
Q ss_pred hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcC------CchHHHHHHHhcC--C-CcEEEEcCCCccCCccc
Q 035959 226 AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVE------GNKHLRKVLIATE--N-KSILVVGDIDCCTELQD 296 (338)
Q Consensus 226 ~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~------~~~~l~~~l~~~~--~-~~Il~iDeiD~~~~~~~ 296 (338)
++++|+|+|||||||||.+++|+|++.+..++.+++.++. +++.|++.|..+. + |+|++|||+|.+.+ +
T Consensus 216 ~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p--~ 293 (693)
T KOG0730|consen 216 KPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCP--K 293 (693)
T ss_pred CCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCC--c
Confidence 5679999999999999999999999999999999998775 4678999999885 4 99999999999998 6
Q ss_pred ccccccCCCCCCCCCCcchhhHHHHHHHhcCCcC
Q 035959 297 RSAQARTASPDWHSPKRDQITLSGLLNFTDGLWS 330 (338)
Q Consensus 297 r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s 330 (338)
|.+.. ...+++.++|+..|||+-+
T Consensus 294 r~~~~----------~~e~Rv~sqlltL~dg~~~ 317 (693)
T KOG0730|consen 294 REGAD----------DVESRVVSQLLTLLDGLKP 317 (693)
T ss_pred ccccc----------hHHHHHHHHHHHHHhhCcC
Confidence 64432 2568999999999999973
No 42
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.29 E-value=9.9e-12 Score=119.30 Aligned_cols=94 Identities=22% Similarity=0.324 Sum_probs=79.4
Q ss_pred CCCCCccccccCChhHHHHHHHHHHh-----hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCCchHHHHHH
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLER-----AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKVL 274 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~-----~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~~~~l~~~l 274 (338)
...|.+|+++++.++.++.+...+.. ...+++|||||||||||++++++|+.++.++..++...+.....+..++
T Consensus 18 ~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~~~l~~~l 97 (328)
T PRK00080 18 SLRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKPGDLAAIL 97 (328)
T ss_pred hcCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccChHHHHHHH
Confidence 34588999999999998888776654 2235799999999999999999999999998888777666667788888
Q ss_pred HhcCCCcEEEEcCCCccCC
Q 035959 275 IATENKSILVVGDIDCCTE 293 (338)
Q Consensus 275 ~~~~~~~Il~iDeiD~~~~ 293 (338)
.....+++|||||||.+..
T Consensus 98 ~~l~~~~vl~IDEi~~l~~ 116 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLSP 116 (328)
T ss_pred HhcccCCEEEEecHhhcch
Confidence 8888899999999999864
No 43
>PRK04195 replication factor C large subunit; Provisional
Probab=99.28 E-value=1.8e-11 Score=123.38 Aligned_cols=95 Identities=24% Similarity=0.415 Sum_probs=79.5
Q ss_pred cCCCCCccccccCChhHHHHHHHHHHhhh----cCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCCchHHHHHH
Q 035959 199 ILDHPSTFDTLAMDTDMKKMIMDDLERAW----KRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKVL 274 (338)
Q Consensus 199 ~~~~p~~f~~l~~~~~~k~~i~~~l~~~~----~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~~~~l~~~l 274 (338)
..+.|.+|+++++++..++.+...+.... ++.+||+||||||||++++++|++++++++.++.++......+..++
T Consensus 6 eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~~~i 85 (482)
T PRK04195 6 EKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIERVA 85 (482)
T ss_pred hhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHHHHH
Confidence 47889999999999999999888887522 57899999999999999999999999999999998877655555554
Q ss_pred Hhc--------CCCcEEEEcCCCccCC
Q 035959 275 IAT--------ENKSILVVGDIDCCTE 293 (338)
Q Consensus 275 ~~~--------~~~~Il~iDeiD~~~~ 293 (338)
... ..+.||||||+|.+..
T Consensus 86 ~~~~~~~sl~~~~~kvIiIDEaD~L~~ 112 (482)
T PRK04195 86 GEAATSGSLFGARRKLILLDEVDGIHG 112 (482)
T ss_pred HHhhccCcccCCCCeEEEEecCccccc
Confidence 433 1578999999999864
No 44
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.27 E-value=1.5e-11 Score=116.41 Aligned_cols=89 Identities=21% Similarity=0.307 Sum_probs=74.6
Q ss_pred ccccccCChhHHHHHHHHHHh-----hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCCchHHHHHHHhcCC
Q 035959 205 TFDTLAMDTDMKKMIMDDLER-----AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKVLIATEN 279 (338)
Q Consensus 205 ~f~~l~~~~~~k~~i~~~l~~-----~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~~~~l~~~l~~~~~ 279 (338)
+|+++++.++.++.+...+.. ...++++|+||||||||++++++|+.++.++..+..........+...+.....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 81 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLAAILTNLEE 81 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHHHHHHhccc
Confidence 688999999999888877764 223568999999999999999999999998887776666666677777877788
Q ss_pred CcEEEEcCCCccCC
Q 035959 280 KSILVVGDIDCCTE 293 (338)
Q Consensus 280 ~~Il~iDeiD~~~~ 293 (338)
+.+|||||||.+.+
T Consensus 82 ~~vl~iDEi~~l~~ 95 (305)
T TIGR00635 82 GDVLFIDEIHRLSP 95 (305)
T ss_pred CCEEEEehHhhhCH
Confidence 89999999999865
No 45
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=8.8e-12 Score=119.44 Aligned_cols=158 Identities=19% Similarity=0.214 Sum_probs=109.3
Q ss_pred cchhhHHhhhhHHHHHHhHHHHHhccceeeeecc-C-ccC--CCCccccccCCCCCccccccCChhHHHHHHHHHHh---
Q 035959 153 KHKETVLGTYIPHILKKSKELSKKKKTLKLFTLN-C-NRI--NHDTRQSAILDHPSTFDTLAMDTDMKKMIMDDLER--- 225 (338)
Q Consensus 153 ~~~~~vl~~~l~~v~~~~~~~~~~~~~~~l~~~~-~-~~~--~~~~w~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~--- 225 (338)
+.-..|..+|+..++.....+++..+...-+... . ... .+ -..........|+.++..|.++++|.+....
T Consensus 299 keg~~V~w~yi~r~LGqPSLiREsSrg~~pw~gsls~~k~~i~~--~~~~s~~gk~pl~~ViL~psLe~Rie~lA~aTaN 376 (630)
T KOG0742|consen 299 KEGTLVTWRYIERRLGQPSLIRESSRGRFPWIGSLSALKHPIQG--SRSASSRGKDPLEGVILHPSLEKRIEDLAIATAN 376 (630)
T ss_pred cccchhHHHHHHHHcCCchhhhhhccccCCCcccHHHHhchhhh--hHhhhhcCCCCcCCeecCHHHHHHHHHHHHHhcc
Confidence 3445688899999998888777766644222111 0 000 00 0011122233699999999998888765554
Q ss_pred -----hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC-----chHHHHHHHhcC---CCcEEEEcCCCccC
Q 035959 226 -----AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG-----NKHLRKVLIATE---NKSILVVGDIDCCT 292 (338)
Q Consensus 226 -----~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~-----~~~l~~~l~~~~---~~~Il~iDeiD~~~ 292 (338)
..-|++|+|||||||||..++-+|.+.|.++-.+...++.. ...+.++|+-.. +.-+|||||.|.++
T Consensus 377 TK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaVTkiH~lFDWakkS~rGLllFIDEADAFL 456 (630)
T KOG0742|consen 377 TKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFL 456 (630)
T ss_pred cccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchHHHHHHHHHHHHHhhcccceEEEehhhHHHH
Confidence 34578999999999999999999999999988888877763 456778887553 67899999999998
Q ss_pred CcccccccccCCCCCCCCCCcchhhHHHHH
Q 035959 293 ELQDRSAQARTASPDWHSPKRDQITLSGLL 322 (338)
Q Consensus 293 ~~~~r~~~~~~~~~~~~~~~~~~~~ls~lL 322 (338)
. +|+.... ....+..|+.||
T Consensus 457 c--eRnktym--------SEaqRsaLNAlL 476 (630)
T KOG0742|consen 457 C--ERNKTYM--------SEAQRSALNALL 476 (630)
T ss_pred H--Hhchhhh--------cHHHHHHHHHHH
Confidence 7 7766544 223455666655
No 46
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.25 E-value=1.2e-11 Score=118.60 Aligned_cols=92 Identities=24% Similarity=0.424 Sum_probs=72.1
Q ss_pred CCCCccccccCChhHH---HHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCCchHHHHHHHhc
Q 035959 201 DHPSTFDTLAMDTDMK---KMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKVLIAT 277 (338)
Q Consensus 201 ~~p~~f~~l~~~~~~k---~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~~~~l~~~l~~~ 277 (338)
-.|.+++++++++++. .-+...++...-...+|||||||||||+++.||..++.++..++... .+..+++.+++++
T Consensus 18 mRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-~gvkdlr~i~e~a 96 (436)
T COG2256 18 LRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-SGVKDLREIIEEA 96 (436)
T ss_pred hCCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc-ccHHHHHHHHHHH
Confidence 3588999999987764 23333343333456899999999999999999999999999998754 3467788888776
Q ss_pred C------CCcEEEEcCCCccCC
Q 035959 278 E------NKSILVVGDIDCCTE 293 (338)
Q Consensus 278 ~------~~~Il~iDeiD~~~~ 293 (338)
. ++.||||||||.+..
T Consensus 97 ~~~~~~gr~tiLflDEIHRfnK 118 (436)
T COG2256 97 RKNRLLGRRTILFLDEIHRFNK 118 (436)
T ss_pred HHHHhcCCceEEEEehhhhcCh
Confidence 2 589999999999954
No 47
>PRK07952 DNA replication protein DnaC; Validated
Probab=99.24 E-value=1.3e-11 Score=113.60 Aligned_cols=118 Identities=19% Similarity=0.321 Sum_probs=79.9
Q ss_pred HhHHHHHhccceeeeeccCccCCCCccccccCCCCCccccccCChhHHHHHHHHHHh------hhcCceeeeCCCCCCcH
Q 035959 169 KSKELSKKKKTLKLFTLNCNRINHDTRQSAILDHPSTFDTLAMDTDMKKMIMDDLER------AWKRGYLLFGPPGTGKS 242 (338)
Q Consensus 169 ~~~~~~~~~~~~~l~~~~~~~~~~~~w~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~------~~~~g~LL~GppGtGKT 242 (338)
.+.++.++++..++++.. ..|.-.+..+..+|+++...++..+.++..+.. ....+++|+|+||||||
T Consensus 40 ~~~~i~~~~~q~~~~~~~------~~s~i~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKT 113 (244)
T PRK07952 40 RSAALERENRAMKMQRTF------NRSGIRPLHQNCSFENYRVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKN 113 (244)
T ss_pred HHHHHHHHHHHHHHHHHH------HHcCCCccccCCccccccCCCchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHH
Confidence 344456666665555442 123222355677999987765444444444443 11258999999999999
Q ss_pred HHHHHHHHHh---CCcEEEEecCCcCC---------chHHHHHHHhcCCCcEEEEcCCCccC
Q 035959 243 SLIAAMANYL---HFDVYDLELSSVEG---------NKHLRKVLIATENKSILVVGDIDCCT 292 (338)
Q Consensus 243 ~l~~aia~~l---~~~~~~l~~~~~~~---------~~~l~~~l~~~~~~~Il~iDeiD~~~ 292 (338)
||+.|+|+++ +..+..++..++.. +....+++..+...++|||||+++..
T Consensus 114 hLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~~ 175 (244)
T PRK07952 114 HLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQT 175 (244)
T ss_pred HHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCCCC
Confidence 9999999998 67888887766542 12334667777789999999999875
No 48
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=8.1e-12 Score=122.87 Aligned_cols=96 Identities=25% Similarity=0.431 Sum_probs=76.0
Q ss_pred hhcCceeeeCCCCCCcHHHHHHHHHHhCC-cEEEEecCCcC------CchHHHHHHHhcC----------CCcEEEEcCC
Q 035959 226 AWKRGYLLFGPPGTGKSSLIAAMANYLHF-DVYDLELSSVE------GNKHLRKVLIATE----------NKSILVVGDI 288 (338)
Q Consensus 226 ~~~~g~LL~GppGtGKT~l~~aia~~l~~-~~~~l~~~~~~------~~~~l~~~l~~~~----------~~~Il~iDei 288 (338)
++-+|+|||||||||||.+|+-+..-++. +--.++..++. ++++++++|.+++ .-.||++|||
T Consensus 254 ~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEi 333 (744)
T KOG0741|consen 254 KHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEI 333 (744)
T ss_pred cceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhh
Confidence 56689999999999999999999998864 34455665554 4788999998873 4579999999
Q ss_pred CccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcC
Q 035959 289 DCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWS 330 (338)
Q Consensus 289 D~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s 330 (338)
|+++. .|++..+ ..++....+++||.-|||+-+
T Consensus 334 DAICK--qRGS~~g-------~TGVhD~VVNQLLsKmDGVeq 366 (744)
T KOG0741|consen 334 DAICK--QRGSMAG-------STGVHDTVVNQLLSKMDGVEQ 366 (744)
T ss_pred HHHHH--hcCCCCC-------CCCccHHHHHHHHHhcccHHh
Confidence 99987 6654433 245677899999999999864
No 49
>PLN03025 replication factor C subunit; Provisional
Probab=99.19 E-value=5.4e-11 Score=113.79 Aligned_cols=95 Identities=24% Similarity=0.311 Sum_probs=71.6
Q ss_pred cCCCCCccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHh-C----CcEEEEecCCcCCchHHHHH
Q 035959 199 ILDHPSTFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYL-H----FDVYDLELSSVEGNKHLRKV 273 (338)
Q Consensus 199 ~~~~p~~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l-~----~~~~~l~~~~~~~~~~l~~~ 273 (338)
..+.|.+|+++++++++.+.+...+.......+|||||||||||+++.++|+++ + ..+..++.++......++..
T Consensus 5 ~kyrP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~vr~~ 84 (319)
T PLN03025 5 EKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNK 84 (319)
T ss_pred hhcCCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHHHHHH
Confidence 378899999999999988887776665444569999999999999999999997 2 24666666655444445544
Q ss_pred HHhc---------CCCcEEEEcCCCccCC
Q 035959 274 LIAT---------ENKSILVVGDIDCCTE 293 (338)
Q Consensus 274 l~~~---------~~~~Il~iDeiD~~~~ 293 (338)
+... ....|++|||+|.+..
T Consensus 85 i~~~~~~~~~~~~~~~kviiiDE~d~lt~ 113 (319)
T PLN03025 85 IKMFAQKKVTLPPGRHKIVILDEADSMTS 113 (319)
T ss_pred HHHHHhccccCCCCCeEEEEEechhhcCH
Confidence 3321 2467999999999965
No 50
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=3.6e-11 Score=127.24 Aligned_cols=124 Identities=25% Similarity=0.346 Sum_probs=90.0
Q ss_pred CCccccccCChhHHHHHHHHHHh-------------hhcCceeeeCCCCCCcHHHHHHHHHHhC-----CcEEEEecCCc
Q 035959 203 PSTFDTLAMDTDMKKMIMDDLER-------------AWKRGYLLFGPPGTGKSSLIAAMANYLH-----FDVYDLELSSV 264 (338)
Q Consensus 203 p~~f~~l~~~~~~k~~i~~~l~~-------------~~~~g~LL~GppGtGKT~l~~aia~~l~-----~~~~~l~~~~~ 264 (338)
-..|+++++-......+.+.+.- ..+||+|+|||||||||++++|+|..+. ..++.-..++.
T Consensus 261 ~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~ 340 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADC 340 (1080)
T ss_pred ccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchh
Confidence 34788888766655555554443 3579999999999999999999999983 23333333333
Q ss_pred C------CchHHHHHHHhcC--CCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcCCCCCcc
Q 035959 265 E------GNKHLRKVLIATE--NKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSSCGDER 336 (338)
Q Consensus 265 ~------~~~~l~~~l~~~~--~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s~~g~er 336 (338)
. .+.+++.+|.++. .|+|+++||||-+++ .|..... ......+|.||-.|||+-+. |...
T Consensus 341 lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlap--vrSskqE---------qih~SIvSTLLaLmdGldsR-gqVv 408 (1080)
T KOG0732|consen 341 LSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAP--VRSSKQE---------QIHASIVSTLLALMDGLDSR-GQVV 408 (1080)
T ss_pred hccccCcHHHHHHHHHHHHhccCceEEeccccccccc--cccchHH---------HhhhhHHHHHHHhccCCCCC-CceE
Confidence 2 3567888888885 799999999999999 5533322 23457889999999999865 6555
Q ss_pred cC
Q 035959 337 II 338 (338)
Q Consensus 337 ii 338 (338)
+|
T Consensus 409 vi 410 (1080)
T KOG0732|consen 409 VI 410 (1080)
T ss_pred EE
Confidence 43
No 51
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.17 E-value=4.3e-11 Score=111.23 Aligned_cols=98 Identities=30% Similarity=0.443 Sum_probs=70.3
Q ss_pred ccccccCCCCCccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHhCC------cEEEEecCCcCCc
Q 035959 194 TRQSAILDHPSTFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYLHF------DVYDLELSSVEGN 267 (338)
Q Consensus 194 ~w~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l~~------~~~~l~~~~~~~~ 267 (338)
.|. ..+.|.+|+++++++.+.+.+.+.+.+.-...||||||||||||+.|.|+|.++.- .+..++.++....
T Consensus 25 swt--eKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGi 102 (346)
T KOG0989|consen 25 SWT--EKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGI 102 (346)
T ss_pred chH--HHhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccc
Confidence 354 47899999999999999999988888744457899999999999999999999853 2344444443321
Q ss_pred h-------HHHHHHHhc--------CCCcEEEEcCCCccCC
Q 035959 268 K-------HLRKVLIAT--------ENKSILVVGDIDCCTE 293 (338)
Q Consensus 268 ~-------~l~~~l~~~--------~~~~Il~iDeiD~~~~ 293 (338)
+ ...++.... +..-|+||||+|.+..
T Consensus 103 svvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts 143 (346)
T KOG0989|consen 103 SVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTS 143 (346)
T ss_pred cchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhH
Confidence 1 111222111 1347999999999964
No 52
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=8e-11 Score=119.79 Aligned_cols=84 Identities=25% Similarity=0.360 Sum_probs=67.3
Q ss_pred cCChhHHHHHHHHHHhh-----hc-CceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCCchHHH------------
Q 035959 210 AMDTDMKKMIMDDLERA-----WK-RGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLR------------ 271 (338)
Q Consensus 210 ~~~~~~k~~i~~~l~~~-----~~-~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~~~~l~------------ 271 (338)
.+-+.+|++|++.|.-. .+ .-++|.||||+|||||++++|+.++..++.+++..+.++++++
T Consensus 326 YGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPG 405 (782)
T COG0466 326 YGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPG 405 (782)
T ss_pred cCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCCh
Confidence 34567899999988761 12 2357999999999999999999999999999999999876654
Q ss_pred HHH---Hhc-CCCcEEEEcCCCccCC
Q 035959 272 KVL---IAT-ENKSILVVGDIDCCTE 293 (338)
Q Consensus 272 ~~l---~~~-~~~~Il~iDeiD~~~~ 293 (338)
+++ ..+ ..+.+++|||||.+..
T Consensus 406 rIiQ~mkka~~~NPv~LLDEIDKm~s 431 (782)
T COG0466 406 KIIQGMKKAGVKNPVFLLDEIDKMGS 431 (782)
T ss_pred HHHHHHHHhCCcCCeEEeechhhccC
Confidence 233 333 3688999999999987
No 53
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.16 E-value=8.9e-11 Score=117.71 Aligned_cols=94 Identities=27% Similarity=0.491 Sum_probs=72.3
Q ss_pred CCCCCccccccCChhHHHHHHHHHHhhh-cCceeeeCCCCCCcHHHHHHHHHHhCC------------------------
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLERAW-KRGYLLFGPPGTGKSSLIAAMANYLHF------------------------ 254 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~~~-~~g~LL~GppGtGKT~l~~aia~~l~~------------------------ 254 (338)
..+|.+|+++++++++++.+...+.... +.++|||||||||||++|+++|+.++.
T Consensus 7 kyRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~ 86 (472)
T PRK14962 7 KYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFM 86 (472)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCC
Confidence 5679999999999999888877776533 345899999999999999999998753
Q ss_pred cEEEEecCCcCCchHHHHHHHhc------CCCcEEEEcCCCccCC
Q 035959 255 DVYDLELSSVEGNKHLRKVLIAT------ENKSILVVGDIDCCTE 293 (338)
Q Consensus 255 ~~~~l~~~~~~~~~~l~~~l~~~------~~~~Il~iDeiD~~~~ 293 (338)
+++.++.+.-.....++++.... ....||||||+|.+..
T Consensus 87 dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~ 131 (472)
T PRK14962 87 DVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK 131 (472)
T ss_pred ccEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH
Confidence 57777776444445566555443 2467999999999853
No 54
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.16 E-value=1.3e-10 Score=118.16 Aligned_cols=97 Identities=23% Similarity=0.340 Sum_probs=83.3
Q ss_pred ccccccCCCCCccccccCChhHHHHHHHHHHh----------------------------------hhcCceeeeCCCCC
Q 035959 194 TRQSAILDHPSTFDTLAMDTDMKKMIMDDLER----------------------------------AWKRGYLLFGPPGT 239 (338)
Q Consensus 194 ~w~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~----------------------------------~~~~g~LL~GppGt 239 (338)
.|. ....|..|.+|..++..-+.++.+|.. |.++-+||+||||-
T Consensus 260 LWV--dky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGl 337 (877)
T KOG1969|consen 260 LWV--DKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGL 337 (877)
T ss_pred eee--cccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCC
Confidence 574 478899999999999999999999987 45567899999999
Q ss_pred CcHHHHHHHHHHhCCcEEEEecCCcCCchHHHHHHHhc----------CCCcEEEEcCCCccC
Q 035959 240 GKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKVLIAT----------ENKSILVVGDIDCCT 292 (338)
Q Consensus 240 GKT~l~~aia~~l~~~~~~l~~~~~~~~~~l~~~l~~~----------~~~~Il~iDeiD~~~ 292 (338)
|||+||+.+|+++||.+++++.++-.+...++..+..+ .+|.+|||||||-..
T Consensus 338 GKTTLAHViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 338 GKTTLAHVIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP 400 (877)
T ss_pred ChhHHHHHHHHhcCceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCc
Confidence 99999999999999999999999988866665554433 379999999999875
No 55
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.15 E-value=1.1e-10 Score=115.54 Aligned_cols=93 Identities=25% Similarity=0.384 Sum_probs=73.8
Q ss_pred CCCCCccccccCChhHHHH---HHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCCchHHHHHHHh
Q 035959 200 LDHPSTFDTLAMDTDMKKM---IMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKVLIA 276 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~---i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~~~~l~~~l~~ 276 (338)
..+|.+|+++++.++.... +...+.......++|+||||||||++++++|+.++.+++.++.... ....++.++..
T Consensus 5 ~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-~~~~ir~ii~~ 83 (413)
T PRK13342 5 RMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-GVKDLREVIEE 83 (413)
T ss_pred hhCCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc-cHHHHHHHHHH
Confidence 4678999999999887544 6666766555689999999999999999999999999999987653 33455555554
Q ss_pred c------CCCcEEEEcCCCccCC
Q 035959 277 T------ENKSILVVGDIDCCTE 293 (338)
Q Consensus 277 ~------~~~~Il~iDeiD~~~~ 293 (338)
. ..+.+|||||||.+..
T Consensus 84 ~~~~~~~g~~~vL~IDEi~~l~~ 106 (413)
T PRK13342 84 ARQRRSAGRRTILFIDEIHRFNK 106 (413)
T ss_pred HHHhhhcCCceEEEEechhhhCH
Confidence 4 2678999999999854
No 56
>PRK06893 DNA replication initiation factor; Validated
Probab=99.15 E-value=1.6e-10 Score=105.58 Aligned_cols=94 Identities=17% Similarity=0.236 Sum_probs=62.6
Q ss_pred ccCCCCCccccccCChhHH--HHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCCchHHHH
Q 035959 198 AILDHPSTFDTLAMDTDMK--KMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEGNKHLRK 272 (338)
Q Consensus 198 ~~~~~p~~f~~l~~~~~~k--~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~~~~l~~ 272 (338)
++...+.+|++++..++.. ..+.+.........++||||||||||||++|+|+++ +..+.++++.... ....+
T Consensus 7 ~~~~~~~~fd~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--~~~~~ 84 (229)
T PRK06893 7 IHQIDDETLDNFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--YFSPA 84 (229)
T ss_pred CCCCCcccccccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--hhhHH
Confidence 4456677999998655432 112122211222346899999999999999999987 4566677664322 11234
Q ss_pred HHHhcCCCcEEEEcCCCccCC
Q 035959 273 VLIATENKSILVVGDIDCCTE 293 (338)
Q Consensus 273 ~l~~~~~~~Il~iDeiD~~~~ 293 (338)
++....+..+|+||||+.+..
T Consensus 85 ~~~~~~~~dlLilDDi~~~~~ 105 (229)
T PRK06893 85 VLENLEQQDLVCLDDLQAVIG 105 (229)
T ss_pred HHhhcccCCEEEEeChhhhcC
Confidence 556667789999999999864
No 57
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.15 E-value=1.3e-10 Score=118.78 Aligned_cols=94 Identities=21% Similarity=0.376 Sum_probs=75.4
Q ss_pred CCCCCccccccCChhHHHHHHHHHHh-hhcCceeeeCCCCCCcHHHHHHHHHHhCC------------------------
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLER-AWKRGYLLFGPPGTGKSSLIAAMANYLHF------------------------ 254 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~-~~~~g~LL~GppGtGKT~l~~aia~~l~~------------------------ 254 (338)
.++|++|+++++.+++++.+.+.+.. ..+..|||+||+|||||++++++|+.++.
T Consensus 9 KYRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~ 88 (700)
T PRK12323 9 KWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEID 88 (700)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHH
Confidence 56899999999999999998888876 33456899999999999999999998864
Q ss_pred -----cEEEEecCCcCCchHHHHHHHhc------CCCcEEEEcCCCccCC
Q 035959 255 -----DVYDLELSSVEGNKHLRKVLIAT------ENKSILVVGDIDCCTE 293 (338)
Q Consensus 255 -----~~~~l~~~~~~~~~~l~~~l~~~------~~~~Il~iDeiD~~~~ 293 (338)
+++.++..+-...+++++++... .+..|+||||+|.+..
T Consensus 89 aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~ 138 (700)
T PRK12323 89 AGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN 138 (700)
T ss_pred cCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH
Confidence 55666665544556677777654 2567999999999954
No 58
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.14 E-value=1.5e-10 Score=118.58 Aligned_cols=94 Identities=19% Similarity=0.390 Sum_probs=75.9
Q ss_pred CCCCCccccccCChhHHHHHHHHHHhh-hcCceeeeCCCCCCcHHHHHHHHHHhCC------------------------
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLERA-WKRGYLLFGPPGTGKSSLIAAMANYLHF------------------------ 254 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~~-~~~g~LL~GppGtGKT~l~~aia~~l~~------------------------ 254 (338)
..+|.+|+++++.+.+++.+...+... .+..|||+||||||||++|+++|+.++.
T Consensus 8 KyRPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hp 87 (702)
T PRK14960 8 KYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFI 87 (702)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCC
Confidence 467999999999999999998888763 3467899999999999999999998853
Q ss_pred cEEEEecCCcCCchHHHHHHHhc------CCCcEEEEcCCCccCC
Q 035959 255 DVYDLELSSVEGNKHLRKVLIAT------ENKSILVVGDIDCCTE 293 (338)
Q Consensus 255 ~~~~l~~~~~~~~~~l~~~l~~~------~~~~Il~iDeiD~~~~ 293 (338)
+++.++.++-....+++.++... .+..|+||||+|.+..
T Consensus 88 DviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~ 132 (702)
T PRK14960 88 DLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST 132 (702)
T ss_pred ceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH
Confidence 56777776555556777777655 2567999999998854
No 59
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.14 E-value=3.3e-10 Score=107.81 Aligned_cols=98 Identities=18% Similarity=0.195 Sum_probs=75.6
Q ss_pred CCccccccCCCCCccccccCChhHHHHHHHHHHhhh-cCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCCchHH
Q 035959 192 HDTRQSAILDHPSTFDTLAMDTDMKKMIMDDLERAW-KRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHL 270 (338)
Q Consensus 192 ~~~w~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~~~-~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~~~~l 270 (338)
...|. ..+.|.+|+++++++..++.+...+.... +..+||+||||+|||+++.++|+.++.+++.+++.+ .....+
T Consensus 8 ~~~w~--~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~~~~~i 84 (316)
T PHA02544 8 EFMWE--QKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-CRIDFV 84 (316)
T ss_pred CCcce--eccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-ccHHHH
Confidence 34675 37889999999999999999988887643 345667999999999999999999999999999887 322223
Q ss_pred HHHH----Hhc---CCCcEEEEcCCCccC
Q 035959 271 RKVL----IAT---ENKSILVVGDIDCCT 292 (338)
Q Consensus 271 ~~~l----~~~---~~~~Il~iDeiD~~~ 292 (338)
+..+ ... ..+.+|+|||+|.+.
T Consensus 85 ~~~l~~~~~~~~~~~~~~vliiDe~d~l~ 113 (316)
T PHA02544 85 RNRLTRFASTVSLTGGGKVIIIDEFDRLG 113 (316)
T ss_pred HHHHHHHHHhhcccCCCeEEEEECccccc
Confidence 2322 222 367899999999883
No 60
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.12 E-value=1.6e-10 Score=115.11 Aligned_cols=94 Identities=19% Similarity=0.393 Sum_probs=71.1
Q ss_pred CCCCCccccccCChhHHHHHHHHHHhhh-cCceeeeCCCCCCcHHHHHHHHHHhCC------------------------
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLERAW-KRGYLLFGPPGTGKSSLIAAMANYLHF------------------------ 254 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~~~-~~g~LL~GppGtGKT~l~~aia~~l~~------------------------ 254 (338)
...|.+|+++++.+++.+.+...+.... +..+||+||||||||++|+++|+.++.
T Consensus 11 KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~ 90 (484)
T PRK14956 11 KYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISS 90 (484)
T ss_pred HhCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCc
Confidence 5679999999999999888888777633 345899999999999999999998864
Q ss_pred cEEEEecCCcCCchHHHHHHHhc------CCCcEEEEcCCCccCC
Q 035959 255 DVYDLELSSVEGNKHLRKVLIAT------ENKSILVVGDIDCCTE 293 (338)
Q Consensus 255 ~~~~l~~~~~~~~~~l~~~l~~~------~~~~Il~iDeiD~~~~ 293 (338)
+++.++...-...++++.+...+ ....|+||||+|.+..
T Consensus 91 dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~ 135 (484)
T PRK14956 91 DVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD 135 (484)
T ss_pred cceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH
Confidence 35556654433344555554433 2567999999999954
No 61
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.12 E-value=2.2e-10 Score=115.93 Aligned_cols=94 Identities=16% Similarity=0.369 Sum_probs=76.2
Q ss_pred CCCCCccccccCChhHHHHHHHHHHhhh-cCceeeeCCCCCCcHHHHHHHHHHhCC------------------------
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLERAW-KRGYLLFGPPGTGKSSLIAAMANYLHF------------------------ 254 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~~~-~~g~LL~GppGtGKT~l~~aia~~l~~------------------------ 254 (338)
..+|.+|+++++.+++.+.+.+.+.... +..|||+||||||||++|+++|+.++.
T Consensus 9 kyRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~ 88 (509)
T PRK14958 9 KWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFP 88 (509)
T ss_pred HHCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCc
Confidence 5679999999999999999999887743 456899999999999999999998843
Q ss_pred cEEEEecCCcCCchHHHHHHHhcC------CCcEEEEcCCCccCC
Q 035959 255 DVYDLELSSVEGNKHLRKVLIATE------NKSILVVGDIDCCTE 293 (338)
Q Consensus 255 ~~~~l~~~~~~~~~~l~~~l~~~~------~~~Il~iDeiD~~~~ 293 (338)
+++.++.++-...++++.++.... +..|+||||+|.+..
T Consensus 89 d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~ 133 (509)
T PRK14958 89 DLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG 133 (509)
T ss_pred eEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH
Confidence 367777765555667777776542 467999999999864
No 62
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.11 E-value=3e-10 Score=112.08 Aligned_cols=116 Identities=21% Similarity=0.286 Sum_probs=78.6
Q ss_pred cccc-ccCChhHHHHHHHHHHh----------------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC-
Q 035959 205 TFDT-LAMDTDMKKMIMDDLER----------------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG- 266 (338)
Q Consensus 205 ~f~~-l~~~~~~k~~i~~~l~~----------------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~- 266 (338)
.++. +++.++.++.+...+.. ..+.++||+||||||||++++++|..++.+++.++++.+..
T Consensus 68 ~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~ 147 (412)
T PRK05342 68 HLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEA 147 (412)
T ss_pred HHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccC
Confidence 3443 67888888776544422 12467999999999999999999999999999999987642
Q ss_pred -------chHHHHHHHh------cCCCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCC
Q 035959 267 -------NKHLRKVLIA------TENKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGL 328 (338)
Q Consensus 267 -------~~~l~~~l~~------~~~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl 328 (338)
...+..++.. ...++||||||||.+.. ++.+... ..+-....+...||..|||-
T Consensus 148 gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~--~~~~~~~------~~d~s~~~vQ~~LL~~Leg~ 214 (412)
T PRK05342 148 GYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIAR--KSENPSI------TRDVSGEGVQQALLKILEGT 214 (412)
T ss_pred CcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhcc--ccCCCCc------CCCcccHHHHHHHHHHHhcC
Confidence 1123333322 23689999999999976 3211111 00111234778999999985
No 63
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.11 E-value=2e-10 Score=118.84 Aligned_cols=94 Identities=19% Similarity=0.357 Sum_probs=74.4
Q ss_pred CCCCCccccccCChhHHHHHHHHHHhh-hcCceeeeCCCCCCcHHHHHHHHHHhCC------------------------
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLERA-WKRGYLLFGPPGTGKSSLIAAMANYLHF------------------------ 254 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~~-~~~g~LL~GppGtGKT~l~~aia~~l~~------------------------ 254 (338)
.++|.+|+++++++++++.+.+.+... .+..|||+||+|||||++++++|+.++.
T Consensus 9 KYRPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~ 88 (830)
T PRK07003 9 KWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFV 88 (830)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCc
Confidence 467999999999999999998888763 3456899999999999999999998853
Q ss_pred cEEEEecCCcCCchHHHHHHHhc------CCCcEEEEcCCCccCC
Q 035959 255 DVYDLELSSVEGNKHLRKVLIAT------ENKSILVVGDIDCCTE 293 (338)
Q Consensus 255 ~~~~l~~~~~~~~~~l~~~l~~~------~~~~Il~iDeiD~~~~ 293 (338)
+++.++..+-....++++++... .+..|+||||+|.+..
T Consensus 89 DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~ 133 (830)
T PRK07003 89 DYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN 133 (830)
T ss_pred eEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH
Confidence 46666665444455677777654 2568999999999954
No 64
>PRK08727 hypothetical protein; Validated
Probab=99.11 E-value=4.2e-10 Score=103.02 Aligned_cols=94 Identities=22% Similarity=0.247 Sum_probs=66.7
Q ss_pred ccCCCCCccccccCChhHHHHHHHHHH-hhhcCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCCchHHHHH
Q 035959 198 AILDHPSTFDTLAMDTDMKKMIMDDLE-RAWKRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEGNKHLRKV 273 (338)
Q Consensus 198 ~~~~~p~~f~~l~~~~~~k~~i~~~l~-~~~~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~~~~l~~~ 273 (338)
++.....+|++++..+...-.....+. ..+...++|+||+|||||||++|+|+++ +..+.++++.+.. ..+.+.
T Consensus 10 ~~~~~~~~f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~--~~~~~~ 87 (233)
T PRK08727 10 LRYPSDQRFDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA--GRLRDA 87 (233)
T ss_pred CCCCCcCChhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh--hhHHHH
Confidence 345556699998876643322222322 2334568999999999999999998876 5677777765533 345566
Q ss_pred HHhcCCCcEEEEcCCCccCC
Q 035959 274 LIATENKSILVVGDIDCCTE 293 (338)
Q Consensus 274 l~~~~~~~Il~iDeiD~~~~ 293 (338)
+....+..+|+|||+|.+..
T Consensus 88 ~~~l~~~dlLiIDDi~~l~~ 107 (233)
T PRK08727 88 LEALEGRSLVALDGLESIAG 107 (233)
T ss_pred HHHHhcCCEEEEeCcccccC
Confidence 77777889999999998865
No 65
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.11 E-value=3e-10 Score=113.93 Aligned_cols=94 Identities=17% Similarity=0.339 Sum_probs=76.0
Q ss_pred CCCCCccccccCChhHHHHHHHHHHh-hhcCceeeeCCCCCCcHHHHHHHHHHh------------------------CC
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLER-AWKRGYLLFGPPGTGKSSLIAAMANYL------------------------HF 254 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~-~~~~g~LL~GppGtGKT~l~~aia~~l------------------------~~ 254 (338)
.+.|.+|+++++++.+.+.+.+.+.. ..++.+||+||||||||++|+++|+.+ ..
T Consensus 6 KyRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~ 85 (491)
T PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHP 85 (491)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCC
Confidence 46799999999999988888777665 334689999999999999999999865 24
Q ss_pred cEEEEecCCcCCchHHHHHHHhc------CCCcEEEEcCCCccCC
Q 035959 255 DVYDLELSSVEGNKHLRKVLIAT------ENKSILVVGDIDCCTE 293 (338)
Q Consensus 255 ~~~~l~~~~~~~~~~l~~~l~~~------~~~~Il~iDeiD~~~~ 293 (338)
+++.++.++-....+++.++... ....|+||||+|.+..
T Consensus 86 Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~ 130 (491)
T PRK14964 86 DVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN 130 (491)
T ss_pred CEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH
Confidence 67888887766667788777665 2568999999998854
No 66
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.10 E-value=2.9e-10 Score=105.77 Aligned_cols=87 Identities=15% Similarity=0.266 Sum_probs=61.9
Q ss_pred cccccCChhHHHHHHHHHHh---------------hhcCceeeeCCCCCCcHHHHHHHHHHh---C----CcEEEEecCC
Q 035959 206 FDTLAMDTDMKKMIMDDLER---------------AWKRGYLLFGPPGTGKSSLIAAMANYL---H----FDVYDLELSS 263 (338)
Q Consensus 206 f~~l~~~~~~k~~i~~~l~~---------------~~~~g~LL~GppGtGKT~l~~aia~~l---~----~~~~~l~~~~ 263 (338)
++++++-+++|+++.+.... +...+++|+||||||||++|+++|+.+ + ..++.+++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~ 84 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD 84 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH
Confidence 56788888888777654433 122457999999999999999999875 2 3566666655
Q ss_pred cCC------chHHHHHHHhcCCCcEEEEcCCCccCC
Q 035959 264 VEG------NKHLRKVLIATENKSILVVGDIDCCTE 293 (338)
Q Consensus 264 ~~~------~~~l~~~l~~~~~~~Il~iDeiD~~~~ 293 (338)
+.. ...+..++..+ .++||||||+|.+..
T Consensus 85 l~~~~~g~~~~~~~~~~~~a-~~~VL~IDE~~~L~~ 119 (261)
T TIGR02881 85 LVGEYIGHTAQKTREVIKKA-LGGVLFIDEAYSLAR 119 (261)
T ss_pred hhhhhccchHHHHHHHHHhc-cCCEEEEechhhhcc
Confidence 432 23456666554 468999999999853
No 67
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.08 E-value=5.1e-10 Score=109.00 Aligned_cols=94 Identities=17% Similarity=0.310 Sum_probs=70.7
Q ss_pred CCCCCccccccCChhHHHHHHHHHHh-hhcCceeeeCCCCCCcHHHHHHHHHHhCC------------------------
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLER-AWKRGYLLFGPPGTGKSSLIAAMANYLHF------------------------ 254 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~-~~~~g~LL~GppGtGKT~l~~aia~~l~~------------------------ 254 (338)
...|.+|++++++++..+.+...+.. ..+..+||+||||||||++++++|+.+..
T Consensus 9 kyrP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~ 88 (363)
T PRK14961 9 KWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCL 88 (363)
T ss_pred HhCCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 45789999999999999888887776 33456899999999999999999998742
Q ss_pred cEEEEecCCcCCchHHHHHHHhcC------CCcEEEEcCCCccCC
Q 035959 255 DVYDLELSSVEGNKHLRKVLIATE------NKSILVVGDIDCCTE 293 (338)
Q Consensus 255 ~~~~l~~~~~~~~~~l~~~l~~~~------~~~Il~iDeiD~~~~ 293 (338)
+++.++.++-.....++.++.... ...|+||||+|.+..
T Consensus 89 d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~ 133 (363)
T PRK14961 89 DLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR 133 (363)
T ss_pred ceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH
Confidence 345555443233455666665532 457999999998853
No 68
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.07 E-value=1e-09 Score=100.12 Aligned_cols=98 Identities=23% Similarity=0.292 Sum_probs=83.5
Q ss_pred CCccccccCCCCCccccccCChhHHHHHHHHHHh----hhcCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCc
Q 035959 192 HDTRQSAILDHPSTFDTLAMDTDMKKMIMDDLER----AWKRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSV 264 (338)
Q Consensus 192 ~~~w~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~----~~~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~ 264 (338)
++...+++...|..+++|++-+..|+.+++...+ ....++||||++|||||++++|+.+++ |..++.++-.++
T Consensus 12 ~~~l~~i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L 91 (249)
T PF05673_consen 12 SGYLEPIKHPDPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL 91 (249)
T ss_pred CCcEEecCCCCCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh
Confidence 3456667777778999999999999999988877 455789999999999999999999977 678888888888
Q ss_pred CCchHHHHHHHhcCCCcEEEEcCCC
Q 035959 265 EGNKHLRKVLIATENKSILVVGDID 289 (338)
Q Consensus 265 ~~~~~l~~~l~~~~~~~Il~iDeiD 289 (338)
.+-..+...+...+.+-|||+||+.
T Consensus 92 ~~l~~l~~~l~~~~~kFIlf~DDLs 116 (249)
T PF05673_consen 92 GDLPELLDLLRDRPYKFILFCDDLS 116 (249)
T ss_pred ccHHHHHHHHhcCCCCEEEEecCCC
Confidence 8888888888888889999999854
No 69
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.06 E-value=7e-10 Score=111.95 Aligned_cols=94 Identities=20% Similarity=0.394 Sum_probs=73.8
Q ss_pred CCCCCccccccCChhHHHHHHHHHHh-hhcCceeeeCCCCCCcHHHHHHHHHHhCC------------------------
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLER-AWKRGYLLFGPPGTGKSSLIAAMANYLHF------------------------ 254 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~-~~~~g~LL~GppGtGKT~l~~aia~~l~~------------------------ 254 (338)
..+|++|+++++.+.+.+.+...+.. ..+..+||+||||||||++|+++|+.++.
T Consensus 14 kyRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~ 93 (507)
T PRK06645 14 KYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNN 93 (507)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhc
Confidence 57899999999999988888776665 33468999999999999999999998842
Q ss_pred ----cEEEEecCCcCCchHHHHHHHhcC------CCcEEEEcCCCccCC
Q 035959 255 ----DVYDLELSSVEGNKHLRKVLIATE------NKSILVVGDIDCCTE 293 (338)
Q Consensus 255 ----~~~~l~~~~~~~~~~l~~~l~~~~------~~~Il~iDeiD~~~~ 293 (338)
+++.++..+-....+++.++..+. ...|+||||+|.+..
T Consensus 94 ~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~ 142 (507)
T PRK06645 94 HNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK 142 (507)
T ss_pred CCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH
Confidence 455666554445567777776652 568999999998853
No 70
>PRK12377 putative replication protein; Provisional
Probab=99.05 E-value=7.5e-10 Score=102.19 Aligned_cols=89 Identities=22% Similarity=0.323 Sum_probs=62.0
Q ss_pred CccccccCChhHHHHHHHHHHh------hhcCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCC--------
Q 035959 204 STFDTLAMDTDMKKMIMDDLER------AWKRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEG-------- 266 (338)
Q Consensus 204 ~~f~~l~~~~~~k~~i~~~l~~------~~~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~-------- 266 (338)
.+|+++....+..+.++..+.. ....+++|+||||||||||+.|+|+++ +..+..++..++..
T Consensus 71 ~tFdnf~~~~~~~~~a~~~a~~~a~~~~~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~ 150 (248)
T PRK12377 71 CSFANYQVQNDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDN 150 (248)
T ss_pred CCcCCcccCChhHHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhc
Confidence 4788876544333333332222 223579999999999999999999988 57787887766542
Q ss_pred chHHHHHHHhcCCCcEEEEcCCCccC
Q 035959 267 NKHLRKVLIATENKSILVVGDIDCCT 292 (338)
Q Consensus 267 ~~~l~~~l~~~~~~~Il~iDeiD~~~ 292 (338)
......++..+...++|+|||+....
T Consensus 151 ~~~~~~~l~~l~~~dLLiIDDlg~~~ 176 (248)
T PRK12377 151 GQSGEKFLQELCKVDLLVLDEIGIQR 176 (248)
T ss_pred cchHHHHHHHhcCCCEEEEcCCCCCC
Confidence 11234567777899999999997654
No 71
>PRK08181 transposase; Validated
Probab=99.04 E-value=4.8e-10 Score=104.65 Aligned_cols=67 Identities=28% Similarity=0.431 Sum_probs=52.9
Q ss_pred hcCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCC-------chHHHHHHHhcCCCcEEEEcCCCccCC
Q 035959 227 WKRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEG-------NKHLRKVLIATENKSILVVGDIDCCTE 293 (338)
Q Consensus 227 ~~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~-------~~~l~~~l~~~~~~~Il~iDeiD~~~~ 293 (338)
.+.+++|+||||||||||+.|+|+++ |+.+++++..++.. +..+.+.+....+..+|||||++....
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~~ 181 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTK 181 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccccC
Confidence 35679999999999999999999866 77888887765442 233556677777899999999998754
No 72
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.03 E-value=1e-09 Score=111.70 Aligned_cols=94 Identities=19% Similarity=0.389 Sum_probs=72.9
Q ss_pred CCCCCccccccCChhHHHHHHHHHHh-hhcCceeeeCCCCCCcHHHHHHHHHHhCC------------------------
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLER-AWKRGYLLFGPPGTGKSSLIAAMANYLHF------------------------ 254 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~-~~~~g~LL~GppGtGKT~l~~aia~~l~~------------------------ 254 (338)
..+|.+|+++++.+++++.+...+.. ..+..|||+||||+|||++++++|+.++.
T Consensus 9 k~rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~ 88 (527)
T PRK14969 9 KWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFV 88 (527)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 35689999999999999988888876 33456899999999999999999998843
Q ss_pred cEEEEecCCcCCchHHHHHHHhcC------CCcEEEEcCCCccCC
Q 035959 255 DVYDLELSSVEGNKHLRKVLIATE------NKSILVVGDIDCCTE 293 (338)
Q Consensus 255 ~~~~l~~~~~~~~~~l~~~l~~~~------~~~Il~iDeiD~~~~ 293 (338)
+++.++.+.-....+++.++..+. +..|+||||+|.+..
T Consensus 89 d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~ 133 (527)
T PRK14969 89 DLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK 133 (527)
T ss_pred ceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH
Confidence 455666554344556777766542 467999999998853
No 73
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.03 E-value=5e-10 Score=118.30 Aligned_cols=92 Identities=25% Similarity=0.396 Sum_probs=78.2
Q ss_pred CCCccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHh----------CCcEEEEecCCcCC-----
Q 035959 202 HPSTFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYL----------HFDVYDLELSSVEG----- 266 (338)
Q Consensus 202 ~p~~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l----------~~~~~~l~~~~~~~----- 266 (338)
.|..++.+++.++..+++++-|.+..+.+++|+||||||||++++++|..+ +..++.++++.+..
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~ 256 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYR 256 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhcccc
Confidence 566888999998888888888887778899999999999999999999987 67888998876653
Q ss_pred ---chHHHHHHHhcC--CCcEEEEcCCCccCC
Q 035959 267 ---NKHLRKVLIATE--NKSILVVGDIDCCTE 293 (338)
Q Consensus 267 ---~~~l~~~l~~~~--~~~Il~iDeiD~~~~ 293 (338)
+..+++++..+. .++||||||||.+..
T Consensus 257 g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~ 288 (731)
T TIGR02639 257 GDFEERLKAVVSEIEKEPNAILFIDEIHTIVG 288 (731)
T ss_pred chHHHHHHHHHHHHhccCCeEEEEecHHHHhc
Confidence 256888888764 588999999999986
No 74
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.02 E-value=8.3e-10 Score=116.17 Aligned_cols=94 Identities=18% Similarity=0.338 Sum_probs=69.6
Q ss_pred CCCCCccccccCChhHHHHHHHHHHh-hhcCceeeeCCCCCCcHHHHHHHHHHhCCc-----------------------
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLER-AWKRGYLLFGPPGTGKSSLIAAMANYLHFD----------------------- 255 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~-~~~~g~LL~GppGtGKT~l~~aia~~l~~~----------------------- 255 (338)
..+|.+|+++++.+.+++.+.+.+.. ..+..|||+||||||||++++++|+.++..
T Consensus 9 KyRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~ 88 (944)
T PRK14949 9 KWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFV 88 (944)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCc
Confidence 46789999999999999888877765 334567999999999999999999988542
Q ss_pred -EEEEecCCcCCchHHHHHHHhc------CCCcEEEEcCCCccCC
Q 035959 256 -VYDLELSSVEGNKHLRKVLIAT------ENKSILVVGDIDCCTE 293 (338)
Q Consensus 256 -~~~l~~~~~~~~~~l~~~l~~~------~~~~Il~iDeiD~~~~ 293 (338)
++.++..+-.....++.++... .+..|+||||+|.+..
T Consensus 89 DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~ 133 (944)
T PRK14949 89 DLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSR 133 (944)
T ss_pred eEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCH
Confidence 2334443322334566665544 2467999999999953
No 75
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.02 E-value=7.8e-10 Score=114.10 Aligned_cols=94 Identities=17% Similarity=0.326 Sum_probs=72.4
Q ss_pred CCCCCccccccCChhHHHHHHHHHHh-hhcCceeeeCCCCCCcHHHHHHHHHHhCC------------------------
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLER-AWKRGYLLFGPPGTGKSSLIAAMANYLHF------------------------ 254 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~-~~~~g~LL~GppGtGKT~l~~aia~~l~~------------------------ 254 (338)
..+|.+|+++++.+.+.+.+...+.. ..+..|||+||+|||||++++++|+.++.
T Consensus 9 KyRP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~ 88 (647)
T PRK07994 9 KWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFV 88 (647)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCC
Confidence 35799999999999999988888876 33455899999999999999999998854
Q ss_pred cEEEEecCCcCCchHHHHHHHhcC------CCcEEEEcCCCccCC
Q 035959 255 DVYDLELSSVEGNKHLRKVLIATE------NKSILVVGDIDCCTE 293 (338)
Q Consensus 255 ~~~~l~~~~~~~~~~l~~~l~~~~------~~~Il~iDeiD~~~~ 293 (338)
+++.++..+-...++++.++.... ...|+||||+|.+..
T Consensus 89 D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~ 133 (647)
T PRK07994 89 DLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR 133 (647)
T ss_pred CceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH
Confidence 455666554334456676665542 567999999999854
No 76
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.02 E-value=1.1e-09 Score=116.46 Aligned_cols=85 Identities=22% Similarity=0.277 Sum_probs=65.0
Q ss_pred ccCChhHHHHHHHHHHhh------hcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCCc---------------
Q 035959 209 LAMDTDMKKMIMDDLERA------WKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGN--------------- 267 (338)
Q Consensus 209 l~~~~~~k~~i~~~l~~~------~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~~--------------- 267 (338)
+.+.+..++++.+.+... ....++|+||||||||++++++|+.++.+++.+++....+.
T Consensus 322 ~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~ 401 (775)
T TIGR00763 322 HYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMP 401 (775)
T ss_pred cCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCC
Confidence 567788888888866542 22358999999999999999999999999999987664322
Q ss_pred hHHHHHHHhc-CCCcEEEEcCCCccCC
Q 035959 268 KHLRKVLIAT-ENKSILVVGDIDCCTE 293 (338)
Q Consensus 268 ~~l~~~l~~~-~~~~Il~iDeiD~~~~ 293 (338)
..+.+.+... ..+.||+|||||.+..
T Consensus 402 g~i~~~l~~~~~~~~villDEidk~~~ 428 (775)
T TIGR00763 402 GRIIQGLKKAKTKNPLFLLDEIDKIGS 428 (775)
T ss_pred chHHHHHHHhCcCCCEEEEechhhcCC
Confidence 2344555543 3556999999999975
No 77
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.02 E-value=7.5e-10 Score=100.05 Aligned_cols=94 Identities=20% Similarity=0.253 Sum_probs=66.3
Q ss_pred ccCCCCCccccccC--ChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCCchHHHH
Q 035959 198 AILDHPSTFDTLAM--DTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEGNKHLRK 272 (338)
Q Consensus 198 ~~~~~p~~f~~l~~--~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~~~~l~~ 272 (338)
++...+.+|++++. +....+.+...+....++.++|+||||||||++++++++++ +.+++.+++..+... ...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~--~~~ 83 (226)
T TIGR03420 6 VGLPDDPTFDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQA--DPE 83 (226)
T ss_pred CCCCCchhhcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHh--HHH
Confidence 34555668999874 23344444444433445679999999999999999999887 467888888776532 234
Q ss_pred HHHhcCCCcEEEEcCCCccCC
Q 035959 273 VLIATENKSILVVGDIDCCTE 293 (338)
Q Consensus 273 ~l~~~~~~~Il~iDeiD~~~~ 293 (338)
++.......+|+|||+|.+..
T Consensus 84 ~~~~~~~~~lLvIDdi~~l~~ 104 (226)
T TIGR03420 84 VLEGLEQADLVCLDDVEAIAG 104 (226)
T ss_pred HHhhcccCCEEEEeChhhhcC
Confidence 444455678999999999864
No 78
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.02 E-value=8.9e-10 Score=113.33 Aligned_cols=94 Identities=18% Similarity=0.373 Sum_probs=73.3
Q ss_pred CCCCCccccccCChhHHHHHHHHHHhh-hcCceeeeCCCCCCcHHHHHHHHHHhCC------------------------
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLERA-WKRGYLLFGPPGTGKSSLIAAMANYLHF------------------------ 254 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~~-~~~g~LL~GppGtGKT~l~~aia~~l~~------------------------ 254 (338)
..+|.+|+++++++.+.+.+.+.+... .+..|||+||+|||||++++++|+.++.
T Consensus 9 KyRP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~ 88 (618)
T PRK14951 9 KYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDID 88 (618)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHH
Confidence 567999999999999988888888763 3356899999999999999999998753
Q ss_pred -----cEEEEecCCcCCchHHHHHHHhcC------CCcEEEEcCCCccCC
Q 035959 255 -----DVYDLELSSVEGNKHLRKVLIATE------NKSILVVGDIDCCTE 293 (338)
Q Consensus 255 -----~~~~l~~~~~~~~~~l~~~l~~~~------~~~Il~iDeiD~~~~ 293 (338)
+++.++..+-...++++.++.... +..|+||||+|.+..
T Consensus 89 ~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~ 138 (618)
T PRK14951 89 SGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN 138 (618)
T ss_pred cCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCH
Confidence 455665554444556777776542 467999999999864
No 79
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.01 E-value=1e-09 Score=103.38 Aligned_cols=106 Identities=18% Similarity=0.168 Sum_probs=70.7
Q ss_pred cccCChhHHHHHHHHHHh---------------hhcCceeeeCCCCCCcHHHHHHHHHHhC-------CcEEEEecCCcC
Q 035959 208 TLAMDTDMKKMIMDDLER---------------AWKRGYLLFGPPGTGKSSLIAAMANYLH-------FDVYDLELSSVE 265 (338)
Q Consensus 208 ~l~~~~~~k~~i~~~l~~---------------~~~~g~LL~GppGtGKT~l~~aia~~l~-------~~~~~l~~~~~~ 265 (338)
.+++-+++|+++.+.... ....+++|+||||||||++|+++|..+. .+++.+++.++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~ 102 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence 577777788776553332 1234789999999999999999998773 257777765543
Q ss_pred ------CchHHHHHHHhcCCCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcC
Q 035959 266 ------GNKHLRKVLIATENKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDG 327 (338)
Q Consensus 266 ------~~~~l~~~l~~~~~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDg 327 (338)
+...+..++..+ .+++|||||+|.+.. .++. ..........|++.||.
T Consensus 103 ~~~~g~~~~~~~~~~~~a-~~gvL~iDEi~~L~~--~~~~-----------~~~~~~~~~~Ll~~le~ 156 (284)
T TIGR02880 103 GQYIGHTAPKTKEILKRA-MGGVLFIDEAYYLYR--PDNE-----------RDYGQEAIEILLQVMEN 156 (284)
T ss_pred HhhcccchHHHHHHHHHc-cCcEEEEechhhhcc--CCCc-----------cchHHHHHHHHHHHHhc
Confidence 123455566654 458999999999854 2211 11234566778888874
No 80
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.01 E-value=1.2e-09 Score=112.69 Aligned_cols=93 Identities=23% Similarity=0.435 Sum_probs=73.0
Q ss_pred CCCCCccccccCChhHHHHHHHHHHhh-hcCceeeeCCCCCCcHHHHHHHHHHhCC------------------------
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLERA-WKRGYLLFGPPGTGKSSLIAAMANYLHF------------------------ 254 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~~-~~~g~LL~GppGtGKT~l~~aia~~l~~------------------------ 254 (338)
..+|.+|+++++.+.+++.+...+... .+.+|||+||+|||||++++++|+.++.
T Consensus 9 KYRP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~ 88 (709)
T PRK08691 9 KWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYV 88 (709)
T ss_pred HhCCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCcc
Confidence 467999999999999999998888863 3567999999999999999999998642
Q ss_pred cEEEEecCCcCCchHHHHHHHhc------CCCcEEEEcCCCccC
Q 035959 255 DVYDLELSSVEGNKHLRKVLIAT------ENKSILVVGDIDCCT 292 (338)
Q Consensus 255 ~~~~l~~~~~~~~~~l~~~l~~~------~~~~Il~iDeiD~~~ 292 (338)
+++.++..+-.....++.++... .+..||||||+|.+.
T Consensus 89 DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls 132 (709)
T PRK08691 89 DLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS 132 (709)
T ss_pred ceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC
Confidence 34556655444455677777643 356899999999874
No 81
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.00 E-value=1.5e-09 Score=99.51 Aligned_cols=90 Identities=21% Similarity=0.306 Sum_probs=59.2
Q ss_pred CCCCCccccccCChhHHHHHHHHHHh----hhcCceeeeCCCCCCcHHHHHHHHHHhC---CcEEEEecCCcCCchHHHH
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLER----AWKRGYLLFGPPGTGKSSLIAAMANYLH---FDVYDLELSSVEGNKHLRK 272 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~----~~~~g~LL~GppGtGKT~l~~aia~~l~---~~~~~l~~~~~~~~~~l~~ 272 (338)
+....+|++++...+ +.++..+.+ +..+.++||||||||||||++|+|+++. ..+.++++..... ...+
T Consensus 15 ~~~~~~fd~f~~~~n--~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~--~~~~ 90 (235)
T PRK08084 15 LPDDETFASFYPGDN--DSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW--FVPE 90 (235)
T ss_pred CCCcCCccccccCcc--HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh--hhHH
Confidence 455568999874421 223333333 3335789999999999999999998764 4566666654322 1223
Q ss_pred HHHhcCCCcEEEEcCCCccCC
Q 035959 273 VLIATENKSILVVGDIDCCTE 293 (338)
Q Consensus 273 ~l~~~~~~~Il~iDeiD~~~~ 293 (338)
++....+..+|+||||+.+..
T Consensus 91 ~~~~~~~~dlliiDdi~~~~~ 111 (235)
T PRK08084 91 VLEGMEQLSLVCIDNIECIAG 111 (235)
T ss_pred HHHHhhhCCEEEEeChhhhcC
Confidence 344444568999999999864
No 82
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.00 E-value=1.4e-09 Score=110.60 Aligned_cols=94 Identities=19% Similarity=0.365 Sum_probs=71.3
Q ss_pred CCCCCccccccCChhHHHHHHHHHHhh-hcCceeeeCCCCCCcHHHHHHHHHHhCC------------------------
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLERA-WKRGYLLFGPPGTGKSSLIAAMANYLHF------------------------ 254 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~~-~~~g~LL~GppGtGKT~l~~aia~~l~~------------------------ 254 (338)
...|.+|+++++.+...+.+...+... .+..+||+||||||||++++++|+.+..
T Consensus 9 KyRP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~ 88 (546)
T PRK14957 9 KYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFI 88 (546)
T ss_pred HHCcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCC
Confidence 457899999999999998888877752 3346899999999999999999998752
Q ss_pred cEEEEecCCcCCchHHHHHHHhc------CCCcEEEEcCCCccCC
Q 035959 255 DVYDLELSSVEGNKHLRKVLIAT------ENKSILVVGDIDCCTE 293 (338)
Q Consensus 255 ~~~~l~~~~~~~~~~l~~~l~~~------~~~~Il~iDeiD~~~~ 293 (338)
+++.++...-....+++.++... ....|+||||+|.+..
T Consensus 89 dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~ 133 (546)
T PRK14957 89 DLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK 133 (546)
T ss_pred ceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH
Confidence 55566654433444555555543 2567999999999854
No 83
>PRK06526 transposase; Provisional
Probab=99.00 E-value=5.6e-10 Score=103.50 Aligned_cols=121 Identities=15% Similarity=0.238 Sum_probs=74.4
Q ss_pred hhhHHHHHHhHHHHHhccceeeeeccCccCCCCccccccCCCCCccccccCC--hhHHHHHHHHHHh----hhcCceeee
Q 035959 161 TYIPHILKKSKELSKKKKTLKLFTLNCNRINHDTRQSAILDHPSTFDTLAMD--TDMKKMIMDDLER----AWKRGYLLF 234 (338)
Q Consensus 161 ~~l~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~w~~~~~~~p~~f~~l~~~--~~~k~~i~~~l~~----~~~~g~LL~ 234 (338)
++|..+++..-+.+++++..+..+.. .++.+.+|+++-.. +...+..+..+.. ..+.+++|+
T Consensus 37 e~l~~ll~~E~~~R~~~~~~~~lk~a------------~~p~~~~le~fd~~~~~~~~~~~~~~l~~~~fi~~~~nlll~ 104 (254)
T PRK06526 37 EFLAACLQREVAARESHGGEGRIRAA------------RFPARKSLEEFDFDHQRSLKRDTIAHLGTLDFVTGKENVVFL 104 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC------------CCCCCCChhhccCccCCCcchHHHHHHhcCchhhcCceEEEE
Confidence 56666666665555555544343332 13333455544322 2333334444433 235689999
Q ss_pred CCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCC-------chHHHHHHHhcCCCcEEEEcCCCccCC
Q 035959 235 GPPGTGKSSLIAAMANYL---HFDVYDLELSSVEG-------NKHLRKVLIATENKSILVVGDIDCCTE 293 (338)
Q Consensus 235 GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~-------~~~l~~~l~~~~~~~Il~iDeiD~~~~ 293 (338)
||||||||||+.+++.++ |+.++.+...++.. ...+.+.+....+..+|||||++....
T Consensus 105 Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~~~ 173 (254)
T PRK06526 105 GPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYIPF 173 (254)
T ss_pred eCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccCCC
Confidence 999999999999999876 66666665554321 223445566667889999999998753
No 84
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.00 E-value=1.7e-09 Score=105.33 Aligned_cols=94 Identities=17% Similarity=0.417 Sum_probs=71.9
Q ss_pred CCCCCccccccCChhHHHHHHHHHHh-hhcCceeeeCCCCCCcHHHHHHHHHHhCC------------cEEEEecCCcCC
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLER-AWKRGYLLFGPPGTGKSSLIAAMANYLHF------------DVYDLELSSVEG 266 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~-~~~~g~LL~GppGtGKT~l~~aia~~l~~------------~~~~l~~~~~~~ 266 (338)
..+|.+|+++++.+...+.+.+.+.. ..++++|||||||+|||+++.++|+.+.. .+++++......
T Consensus 10 k~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 89 (367)
T PRK14970 10 KYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNS 89 (367)
T ss_pred HHCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCC
Confidence 57799999999999999989888876 34568999999999999999999998742 334444333333
Q ss_pred chHHHHHHHhc------CCCcEEEEcCCCccCC
Q 035959 267 NKHLRKVLIAT------ENKSILVVGDIDCCTE 293 (338)
Q Consensus 267 ~~~l~~~l~~~------~~~~Il~iDeiD~~~~ 293 (338)
...++.++..+ ..+.||+|||+|.+..
T Consensus 90 ~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~ 122 (367)
T PRK14970 90 VDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS 122 (367)
T ss_pred HHHHHHHHHHHhhccccCCcEEEEEeChhhcCH
Confidence 45677776643 2467999999998753
No 85
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.00 E-value=1.7e-09 Score=110.73 Aligned_cols=94 Identities=24% Similarity=0.382 Sum_probs=72.3
Q ss_pred CCCCCccccccCChhHHHHHHHHHHhhh-cCceeeeCCCCCCcHHHHHHHHHHhC-------------------------
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLERAW-KRGYLLFGPPGTGKSSLIAAMANYLH------------------------- 253 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~~~-~~g~LL~GppGtGKT~l~~aia~~l~------------------------- 253 (338)
...|.+|+++++++.+.+.+...+.... +..|||+||+|||||++++++|+.+.
T Consensus 6 kyRP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~ 85 (584)
T PRK14952 6 KYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPG 85 (584)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCC
Confidence 4679999999999999998888887632 34589999999999999999998764
Q ss_pred -CcEEEEecCCcCCchHHHHHHHhc------CCCcEEEEcCCCccCC
Q 035959 254 -FDVYDLELSSVEGNKHLRKVLIAT------ENKSILVVGDIDCCTE 293 (338)
Q Consensus 254 -~~~~~l~~~~~~~~~~l~~~l~~~------~~~~Il~iDeiD~~~~ 293 (338)
.+++.++.++....++++.+.... ....|+||||+|.+..
T Consensus 86 ~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~ 132 (584)
T PRK14952 86 SIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT 132 (584)
T ss_pred CceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH
Confidence 246666665544455565554433 3577999999999854
No 86
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.00 E-value=1.8e-09 Score=110.55 Aligned_cols=94 Identities=20% Similarity=0.419 Sum_probs=75.2
Q ss_pred CCCCCccccccCChhHHHHHHHHHHh-hhcCceeeeCCCCCCcHHHHHHHHHHhC------------------------C
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLER-AWKRGYLLFGPPGTGKSSLIAAMANYLH------------------------F 254 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~-~~~~g~LL~GppGtGKT~l~~aia~~l~------------------------~ 254 (338)
...|.+|+++++.+++.+.+.+.+.. ..++.|||+||+|||||++++.+|+.+. .
T Consensus 9 k~rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~ 88 (559)
T PRK05563 9 KWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLM 88 (559)
T ss_pred HhCCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCC
Confidence 45799999999999999988888876 3456799999999999999999999873 4
Q ss_pred cEEEEecCCcCCchHHHHHHHhcC------CCcEEEEcCCCccCC
Q 035959 255 DVYDLELSSVEGNKHLRKVLIATE------NKSILVVGDIDCCTE 293 (338)
Q Consensus 255 ~~~~l~~~~~~~~~~l~~~l~~~~------~~~Il~iDeiD~~~~ 293 (338)
+++.++.++-.....++.+...+. ...|+||||+|.+..
T Consensus 89 dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~ 133 (559)
T PRK05563 89 DVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST 133 (559)
T ss_pred CeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH
Confidence 677777765455556777766542 567999999998854
No 87
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.99 E-value=1.5e-09 Score=115.05 Aligned_cols=95 Identities=22% Similarity=0.365 Sum_probs=73.6
Q ss_pred cCCCCCccccccCChhHHHHHHHHHHhh-hcCceeeeCCCCCCcHHHHHHHHHHhC------------------------
Q 035959 199 ILDHPSTFDTLAMDTDMKKMIMDDLERA-WKRGYLLFGPPGTGKSSLIAAMANYLH------------------------ 253 (338)
Q Consensus 199 ~~~~p~~f~~l~~~~~~k~~i~~~l~~~-~~~g~LL~GppGtGKT~l~~aia~~l~------------------------ 253 (338)
..+.|.+|+++++++.+++.|...+... ....|||+||+|||||++++++|+.+.
T Consensus 7 ~KyRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~ 86 (824)
T PRK07764 7 RRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGP 86 (824)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCC
Confidence 3678999999999999999988888863 335689999999999999999999884
Q ss_pred --CcEEEEecCCcCCchHHHHHHHhc------CCCcEEEEcCCCccCC
Q 035959 254 --FDVYDLELSSVEGNKHLRKVLIAT------ENKSILVVGDIDCCTE 293 (338)
Q Consensus 254 --~~~~~l~~~~~~~~~~l~~~l~~~------~~~~Il~iDeiD~~~~ 293 (338)
.+++.++..+....++++.+.... ....|+||||+|.+..
T Consensus 87 ~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~ 134 (824)
T PRK07764 87 GSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP 134 (824)
T ss_pred CCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH
Confidence 245666655444455666654432 3678999999999964
No 88
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.98 E-value=1.9e-09 Score=108.96 Aligned_cols=93 Identities=19% Similarity=0.400 Sum_probs=70.0
Q ss_pred CCCCCccccccCChhHHHHHHHHHHhh-hcCceeeeCCCCCCcHHHHHHHHHHhCC-----------------------c
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLERA-WKRGYLLFGPPGTGKSSLIAAMANYLHF-----------------------D 255 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~~-~~~g~LL~GppGtGKT~l~~aia~~l~~-----------------------~ 255 (338)
...|.+|++++++++.++.+...+... .+..+||+||||||||++++++|+.+.. +
T Consensus 7 KyRP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~d 86 (504)
T PRK14963 7 RARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPD 86 (504)
T ss_pred hhCCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCc
Confidence 467999999999999988888887763 2345699999999999999999998842 3
Q ss_pred EEEEecCCcCCchHHHHHHHhc------CCCcEEEEcCCCccC
Q 035959 256 VYDLELSSVEGNKHLRKVLIAT------ENKSILVVGDIDCCT 292 (338)
Q Consensus 256 ~~~l~~~~~~~~~~l~~~l~~~------~~~~Il~iDeiD~~~ 292 (338)
++.++..+......++.+...+ ..+.||||||+|.+.
T Consensus 87 v~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls 129 (504)
T PRK14963 87 VLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS 129 (504)
T ss_pred eEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccC
Confidence 6666665434444555554333 257899999999774
No 89
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.98 E-value=1.6e-09 Score=116.13 Aligned_cols=93 Identities=20% Similarity=0.372 Sum_probs=77.9
Q ss_pred CCCCccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHh----------CCcEEEEecCCcCC----
Q 035959 201 DHPSTFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYL----------HFDVYDLELSSVEG---- 266 (338)
Q Consensus 201 ~~p~~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l----------~~~~~~l~~~~~~~---- 266 (338)
-.|..++.+++.++..+++++-|.+..+.+.+|+||||||||+++.++|..+ +.+++.+++..+..
T Consensus 172 ~r~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~ 251 (857)
T PRK10865 172 AEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKY 251 (857)
T ss_pred HhcCCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccch
Confidence 3456789999999988999998888778899999999999999999999988 67899998887652
Q ss_pred ----chHHHHHHHhc---CCCcEEEEcCCCccCC
Q 035959 267 ----NKHLRKVLIAT---ENKSILVVGDIDCCTE 293 (338)
Q Consensus 267 ----~~~l~~~l~~~---~~~~Il~iDeiD~~~~ 293 (338)
+..+++++... ..++||||||+|.+..
T Consensus 252 ~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~ 285 (857)
T PRK10865 252 RGEFEERLKGVLNDLAKQEGNVILFIDELHTMVG 285 (857)
T ss_pred hhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhcc
Confidence 23577777654 3678999999999986
No 90
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.97 E-value=2.5e-09 Score=105.33 Aligned_cols=94 Identities=14% Similarity=0.314 Sum_probs=70.9
Q ss_pred CCCCCccccccCChhHHHHHHHHHHhh-hcCceeeeCCCCCCcHHHHHHHHHHhCC------------------------
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLERA-WKRGYLLFGPPGTGKSSLIAAMANYLHF------------------------ 254 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~~-~~~g~LL~GppGtGKT~l~~aia~~l~~------------------------ 254 (338)
...|.+|+++++++.+++.+...+... .+..+||+||||+|||++|.++|+.+..
T Consensus 9 k~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~ 88 (397)
T PRK14955 9 KYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCR 88 (397)
T ss_pred hcCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHH
Confidence 467999999999999999888888763 3456999999999999999999998843
Q ss_pred --------cEEEEecCCcCCchHHHHHHHhc------CCCcEEEEcCCCccCC
Q 035959 255 --------DVYDLELSSVEGNKHLRKVLIAT------ENKSILVVGDIDCCTE 293 (338)
Q Consensus 255 --------~~~~l~~~~~~~~~~l~~~l~~~------~~~~Il~iDeiD~~~~ 293 (338)
+++.++..+....++++.+...+ ....|+||||+|.+..
T Consensus 89 ~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~ 141 (397)
T PRK14955 89 DFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI 141 (397)
T ss_pred HHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH
Confidence 23344443333345666665555 2567999999999863
No 91
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=2.1e-09 Score=109.23 Aligned_cols=84 Identities=17% Similarity=0.332 Sum_probs=66.4
Q ss_pred cCChhHHHHHHHHHHhh------hcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCCchH--------------
Q 035959 210 AMDTDMKKMIMDDLERA------WKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGNKH-------------- 269 (338)
Q Consensus 210 ~~~~~~k~~i~~~l~~~------~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~~~~-------------- 269 (338)
.+-.++|++|++.+.-. ...-+.|+||||+||||++++||..+|..+++++...+.+.++
T Consensus 414 Ygm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPG 493 (906)
T KOG2004|consen 414 YGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPG 493 (906)
T ss_pred cchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCCh
Confidence 34467899999988761 1223679999999999999999999999999999988876443
Q ss_pred -HHHHHHhcC-CCcEEEEcCCCccCC
Q 035959 270 -LRKVLIATE-NKSILVVGDIDCCTE 293 (338)
Q Consensus 270 -l~~~l~~~~-~~~Il~iDeiD~~~~ 293 (338)
+.+.+.... .+.+++|||||.+..
T Consensus 494 kiIq~LK~v~t~NPliLiDEvDKlG~ 519 (906)
T KOG2004|consen 494 KIIQCLKKVKTENPLILIDEVDKLGS 519 (906)
T ss_pred HHHHHHHhhCCCCceEEeehhhhhCC
Confidence 445555553 788999999999974
No 92
>CHL00181 cbbX CbbX; Provisional
Probab=98.96 E-value=2.8e-09 Score=100.56 Aligned_cols=107 Identities=18% Similarity=0.217 Sum_probs=70.1
Q ss_pred ccccCChhHHHHHHHHHHh-------------hhcCc--eeeeCCCCCCcHHHHHHHHHHhC-------CcEEEEecCCc
Q 035959 207 DTLAMDTDMKKMIMDDLER-------------AWKRG--YLLFGPPGTGKSSLIAAMANYLH-------FDVYDLELSSV 264 (338)
Q Consensus 207 ~~l~~~~~~k~~i~~~l~~-------------~~~~g--~LL~GppGtGKT~l~~aia~~l~-------~~~~~l~~~~~ 264 (338)
+++++.+++|+++.+.... +...| ++|+||||||||++|+++|..+. .+++.++..++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l 102 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDL 102 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHH
Confidence 4688888888877654332 11223 79999999999999999998762 24777776554
Q ss_pred CC------chHHHHHHHhcCCCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcC
Q 035959 265 EG------NKHLRKVLIATENKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDG 327 (338)
Q Consensus 265 ~~------~~~l~~~l~~~~~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDg 327 (338)
.. ......++..+ .+.||||||+|.+.. .+.. ....+.....|+..||.
T Consensus 103 ~~~~~g~~~~~~~~~l~~a-~ggVLfIDE~~~l~~--~~~~-----------~~~~~e~~~~L~~~me~ 157 (287)
T CHL00181 103 VGQYIGHTAPKTKEVLKKA-MGGVLFIDEAYYLYK--PDNE-----------RDYGSEAIEILLQVMEN 157 (287)
T ss_pred HHHHhccchHHHHHHHHHc-cCCEEEEEccchhcc--CCCc-----------cchHHHHHHHHHHHHhc
Confidence 31 22345556554 568999999999864 2211 11234566677777764
No 93
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=98.96 E-value=3.8e-09 Score=103.99 Aligned_cols=118 Identities=22% Similarity=0.299 Sum_probs=77.4
Q ss_pred cccc-ccCChhHHHHHHHHHHh-----------h-------hcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcC
Q 035959 205 TFDT-LAMDTDMKKMIMDDLER-----------A-------WKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVE 265 (338)
Q Consensus 205 ~f~~-l~~~~~~k~~i~~~l~~-----------~-------~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~ 265 (338)
.++. ++++++.++.+...+.. + .+..+||+||||||||++++++|..++.++..++++.+.
T Consensus 74 ~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~ 153 (413)
T TIGR00382 74 HLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLT 153 (413)
T ss_pred HhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcc
Confidence 3444 46677777766544421 0 124699999999999999999999999999988887654
Q ss_pred C--------chHHHHHHHhc------CCCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcC
Q 035959 266 G--------NKHLRKVLIAT------ENKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWS 330 (338)
Q Consensus 266 ~--------~~~l~~~l~~~------~~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s 330 (338)
. ...+..++... ..++||+|||||.+.. ++...+-.. +-...-+...||..|||...
T Consensus 154 ~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~--~~~~~s~~~------dvsg~~vq~~LL~iLeG~~~ 224 (413)
T TIGR00382 154 EAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISR--KSENPSITR------DVSGEGVQQALLKIIEGTVA 224 (413)
T ss_pred ccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhch--hhccccccc------cccchhHHHHHHHHhhccce
Confidence 2 12233443322 3578999999999976 332211100 11112467889999999764
No 94
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.95 E-value=1.4e-09 Score=103.48 Aligned_cols=89 Identities=25% Similarity=0.347 Sum_probs=63.4
Q ss_pred CCccccccCChhHHHHH----HHHHHh----hhcCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCC-----
Q 035959 203 PSTFDTLAMDTDMKKMI----MDDLER----AWKRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEG----- 266 (338)
Q Consensus 203 p~~f~~l~~~~~~k~~i----~~~l~~----~~~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~----- 266 (338)
..+|+++..++..+..+ .+.+.. +..+|++|+||||||||||+.|+|+++ |..+..+...++..
T Consensus 123 ~atf~~~~~~~~~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~ 202 (306)
T PRK08939 123 QASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNS 202 (306)
T ss_pred cCcHHHhcCCChHHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHH
Confidence 35777776554333222 223332 245699999999999999999999998 78888887765431
Q ss_pred --chHHHHHHHhcCCCcEEEEcCCCcc
Q 035959 267 --NKHLRKVLIATENKSILVVGDIDCC 291 (338)
Q Consensus 267 --~~~l~~~l~~~~~~~Il~iDeiD~~ 291 (338)
+..+.+.+.......+|||||+..-
T Consensus 203 ~~~~~~~~~l~~l~~~dlLiIDDiG~e 229 (306)
T PRK08939 203 ISDGSVKEKIDAVKEAPVLMLDDIGAE 229 (306)
T ss_pred HhcCcHHHHHHHhcCCCEEEEecCCCc
Confidence 2345667777889999999999765
No 95
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.95 E-value=2.8e-09 Score=96.77 Aligned_cols=90 Identities=18% Similarity=0.228 Sum_probs=61.3
Q ss_pred ccCCCCCccccccCCh--hHHHHHHHHHHh-hhcCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCCchHHH
Q 035959 198 AILDHPSTFDTLAMDT--DMKKMIMDDLER-AWKRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEGNKHLR 271 (338)
Q Consensus 198 ~~~~~p~~f~~l~~~~--~~k~~i~~~l~~-~~~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~~~~l~ 271 (338)
++...|.+|++++... .....+.+.... ...++++|+||||||||||++++++++ +..+..+++.+...
T Consensus 9 ~~~~~~~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~----- 83 (227)
T PRK08903 9 LGPPPPPTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLL----- 83 (227)
T ss_pred CCCCChhhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH-----
Confidence 4556677899987432 222222222221 234679999999999999999999976 66788888766432
Q ss_pred HHHHhcCCCcEEEEcCCCccCC
Q 035959 272 KVLIATENKSILVVGDIDCCTE 293 (338)
Q Consensus 272 ~~l~~~~~~~Il~iDeiD~~~~ 293 (338)
.+.......+|+|||+|.+..
T Consensus 84 -~~~~~~~~~~liiDdi~~l~~ 104 (227)
T PRK08903 84 -AFDFDPEAELYAVDDVERLDD 104 (227)
T ss_pred -HHhhcccCCEEEEeChhhcCc
Confidence 123344678999999998743
No 96
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.94 E-value=2.5e-09 Score=102.38 Aligned_cols=69 Identities=16% Similarity=0.296 Sum_probs=55.2
Q ss_pred ccccccCCCCCccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHhC-----CcEEEEecCCc
Q 035959 194 TRQSAILDHPSTFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYLH-----FDVYDLELSSV 264 (338)
Q Consensus 194 ~w~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l~-----~~~~~l~~~~~ 264 (338)
.|. ..+.|.+|+++++.++.++.+...+......+++|+||||||||++++++|+++. .++..+++.+.
T Consensus 4 ~w~--~ky~P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~ 77 (337)
T PRK12402 4 LWT--EKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADF 77 (337)
T ss_pred chH--HhhCCCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhh
Confidence 464 3678999999999999888888877764334799999999999999999999884 34567776543
No 97
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.93 E-value=3.3e-09 Score=108.29 Aligned_cols=94 Identities=18% Similarity=0.415 Sum_probs=72.4
Q ss_pred CCCCCccccccCChhHHHHHHHHHHh-hhcCceeeeCCCCCCcHHHHHHHHHHhC------------------------C
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLER-AWKRGYLLFGPPGTGKSSLIAAMANYLH------------------------F 254 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~-~~~~g~LL~GppGtGKT~l~~aia~~l~------------------------~ 254 (338)
..+|.+|+++++++...+.+...+.. ..++.+||+||||+|||++|.++|+.+. .
T Consensus 9 KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~ 88 (605)
T PRK05896 9 KYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSV 88 (605)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCC
Confidence 56899999999999999888888765 3346799999999999999999999873 2
Q ss_pred cEEEEecCCcCCchHHHHHHHhcC------CCcEEEEcCCCccCC
Q 035959 255 DVYDLELSSVEGNKHLRKVLIATE------NKSILVVGDIDCCTE 293 (338)
Q Consensus 255 ~~~~l~~~~~~~~~~l~~~l~~~~------~~~Il~iDeiD~~~~ 293 (338)
+++.++..+.....+++.+..... ...|++|||+|.+..
T Consensus 89 DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~ 133 (605)
T PRK05896 89 DIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST 133 (605)
T ss_pred ceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH
Confidence 556666554344455666655432 467999999998853
No 98
>PRK05642 DNA replication initiation factor; Validated
Probab=98.93 E-value=3.5e-09 Score=97.01 Aligned_cols=92 Identities=21% Similarity=0.293 Sum_probs=63.4
Q ss_pred ccCCCCCccccccCChhHHHHHHHHHHh------hh-cCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCCc
Q 035959 198 AILDHPSTFDTLAMDTDMKKMIMDDLER------AW-KRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEGN 267 (338)
Q Consensus 198 ~~~~~p~~f~~l~~~~~~k~~i~~~l~~------~~-~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~~ 267 (338)
++.....+|++++.... ...++.+.+ .| .+.++||||+|||||||++|+|+++ +..+.+++..++...
T Consensus 10 ~~~~~~~tfdnF~~~~~--~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~ 87 (234)
T PRK05642 10 VRLRDDATFANYYPGAN--AAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR 87 (234)
T ss_pred CCCCCcccccccCcCCh--HHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh
Confidence 34555669999874432 333444432 23 2578999999999999999999865 567888887765432
Q ss_pred hHHHHHHHhcCCCcEEEEcCCCccCC
Q 035959 268 KHLRKVLIATENKSILVVGDIDCCTE 293 (338)
Q Consensus 268 ~~l~~~l~~~~~~~Il~iDeiD~~~~ 293 (338)
...++.......+|+|||++.+..
T Consensus 88 --~~~~~~~~~~~d~LiiDDi~~~~~ 111 (234)
T PRK05642 88 --GPELLDNLEQYELVCLDDLDVIAG 111 (234)
T ss_pred --hHHHHHhhhhCCEEEEechhhhcC
Confidence 234444455668999999998854
No 99
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.93 E-value=5.6e-09 Score=100.80 Aligned_cols=94 Identities=21% Similarity=0.461 Sum_probs=70.8
Q ss_pred CCCCCccccccCChhHHHHHHHHHHhh-hcCceeeeCCCCCCcHHHHHHHHHHhC------------------------C
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLERA-WKRGYLLFGPPGTGKSSLIAAMANYLH------------------------F 254 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~~-~~~g~LL~GppGtGKT~l~~aia~~l~------------------------~ 254 (338)
...|.+|+++++.+..++.+.+.+... .+..+|||||||+|||+++.++|+.+. .
T Consensus 7 ~~rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~ 86 (355)
T TIGR02397 7 KYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSL 86 (355)
T ss_pred HhCCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 467899999999999999988888763 345689999999999999999998873 2
Q ss_pred cEEEEecCCcCCchHHHHHHHhcC------CCcEEEEcCCCccCC
Q 035959 255 DVYDLELSSVEGNKHLRKVLIATE------NKSILVVGDIDCCTE 293 (338)
Q Consensus 255 ~~~~l~~~~~~~~~~l~~~l~~~~------~~~Il~iDeiD~~~~ 293 (338)
+++.++.........+++++..+. .+.||+|||+|.+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~ 131 (355)
T TIGR02397 87 DVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK 131 (355)
T ss_pred CEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH
Confidence 355555543333345666665542 456999999998843
No 100
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.93 E-value=3.7e-09 Score=108.41 Aligned_cols=94 Identities=20% Similarity=0.336 Sum_probs=71.1
Q ss_pred CCCCCccccccCChhHHHHHHHHHHhh-hcCceeeeCCCCCCcHHHHHHHHHHhCC------------------------
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLERA-WKRGYLLFGPPGTGKSSLIAAMANYLHF------------------------ 254 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~~-~~~g~LL~GppGtGKT~l~~aia~~l~~------------------------ 254 (338)
...|.+|+++++++.+++.+...+... ....|||+||||||||++|.++|+.+..
T Consensus 9 KyRP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hp 88 (624)
T PRK14959 9 RYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHV 88 (624)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCC
Confidence 578999999999999988888888763 3567999999999999999999998853
Q ss_pred cEEEEecCCcCCchHHHHHHHhc------CCCcEEEEcCCCccCC
Q 035959 255 DVYDLELSSVEGNKHLRKVLIAT------ENKSILVVGDIDCCTE 293 (338)
Q Consensus 255 ~~~~l~~~~~~~~~~l~~~l~~~------~~~~Il~iDeiD~~~~ 293 (338)
+++.++...-...++++.+.... ....||||||+|.+..
T Consensus 89 Dv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~ 133 (624)
T PRK14959 89 DVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTR 133 (624)
T ss_pred ceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCH
Confidence 26666654333334455443322 2567999999999953
No 101
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.93 E-value=3.7e-09 Score=108.78 Aligned_cols=94 Identities=19% Similarity=0.400 Sum_probs=73.2
Q ss_pred CCCCCccccccCChhHHHHHHHHHHhh-hcCceeeeCCCCCCcHHHHHHHHHHhCC------------------------
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLERA-WKRGYLLFGPPGTGKSSLIAAMANYLHF------------------------ 254 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~~-~~~g~LL~GppGtGKT~l~~aia~~l~~------------------------ 254 (338)
...|.+|+++++.+++++.+...+... .+..||||||+|||||+++.++|+.+..
T Consensus 9 k~RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~ 88 (576)
T PRK14965 9 KYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSV 88 (576)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCC
Confidence 456999999999999999998888763 4567899999999999999999998742
Q ss_pred cEEEEecCCcCCchHHHHHHHhcC------CCcEEEEcCCCccCC
Q 035959 255 DVYDLELSSVEGNKHLRKVLIATE------NKSILVVGDIDCCTE 293 (338)
Q Consensus 255 ~~~~l~~~~~~~~~~l~~~l~~~~------~~~Il~iDeiD~~~~ 293 (338)
+++.++..+.....+++.+..... ...|+||||+|.+..
T Consensus 89 d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~ 133 (576)
T PRK14965 89 DVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST 133 (576)
T ss_pred CeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH
Confidence 356666555444556666665542 467999999998854
No 102
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.92 E-value=3.1e-09 Score=113.72 Aligned_cols=93 Identities=18% Similarity=0.324 Sum_probs=77.2
Q ss_pred CCCCccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHh----------CCcEEEEecCCcCC----
Q 035959 201 DHPSTFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYL----------HFDVYDLELSSVEG---- 266 (338)
Q Consensus 201 ~~p~~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l----------~~~~~~l~~~~~~~---- 266 (338)
-.|..++.+++.++..+++++.|.+..+.+.+|+||||||||+++.++|..+ +..++.++++.+..
T Consensus 181 ~r~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~ 260 (852)
T TIGR03345 181 AREGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASV 260 (852)
T ss_pred hcCCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhccccc
Confidence 3567889999999988889888888778899999999999999999999986 25678888876542
Q ss_pred ----chHHHHHHHhcC---CCcEEEEcCCCccCC
Q 035959 267 ----NKHLRKVLIATE---NKSILVVGDIDCCTE 293 (338)
Q Consensus 267 ----~~~l~~~l~~~~---~~~Il~iDeiD~~~~ 293 (338)
+..+++++..+. .+.||||||||.+..
T Consensus 261 ~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~ 294 (852)
T TIGR03345 261 KGEFENRLKSVIDEVKASPQPIILFIDEAHTLIG 294 (852)
T ss_pred chHHHHHHHHHHHHHHhcCCCeEEEEeChHHhcc
Confidence 256778887663 578999999999986
No 103
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.91 E-value=5e-09 Score=86.23 Aligned_cols=79 Identities=28% Similarity=0.412 Sum_probs=58.6
Q ss_pred hhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCCchHHHH-----------HHHhcC
Q 035959 213 TDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEGNKHLRK-----------VLIATE 278 (338)
Q Consensus 213 ~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~~~~l~~-----------~l~~~~ 278 (338)
+...+.+...+.....+.++++||||||||++++++++.+ +.+++.+++........... ......
T Consensus 4 ~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (151)
T cd00009 4 EEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKA 83 (151)
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccC
Confidence 3445555555554556789999999999999999999999 88999999887664332221 122234
Q ss_pred CCcEEEEcCCCcc
Q 035959 279 NKSILVVGDIDCC 291 (338)
Q Consensus 279 ~~~Il~iDeiD~~ 291 (338)
.+.+|+|||++.+
T Consensus 84 ~~~~lilDe~~~~ 96 (151)
T cd00009 84 KPGVLFIDEIDSL 96 (151)
T ss_pred CCeEEEEeChhhh
Confidence 7899999999987
No 104
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.91 E-value=6.1e-09 Score=97.01 Aligned_cols=38 Identities=26% Similarity=0.206 Sum_probs=34.1
Q ss_pred cCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcC
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVE 265 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~ 265 (338)
.+.+||.||||||||++|+++|+.+|.+++.+++..-.
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~ 58 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAEL 58 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccC
Confidence 46799999999999999999999999999999887633
No 105
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.90 E-value=3e-09 Score=101.11 Aligned_cols=93 Identities=24% Similarity=0.410 Sum_probs=64.3
Q ss_pred CCCCccccccCChhHHH---HHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHhCCc-EEEEecCCcCC-chHHHHHHH
Q 035959 201 DHPSTFDTLAMDTDMKK---MIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYLHFD-VYDLELSSVEG-NKHLRKVLI 275 (338)
Q Consensus 201 ~~p~~f~~l~~~~~~k~---~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l~~~-~~~l~~~~~~~-~~~l~~~l~ 275 (338)
-.|.++++++++.++.- -+...+++..-..++||||||||||+|++.+++....+ +..|+++.... ..+++.+|+
T Consensus 132 mRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife 211 (554)
T KOG2028|consen 132 MRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFE 211 (554)
T ss_pred cCcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHH
Confidence 45677777777655431 22223333333568999999999999999999988654 44455554443 456788887
Q ss_pred hc-------CCCcEEEEcCCCccCC
Q 035959 276 AT-------ENKSILVVGDIDCCTE 293 (338)
Q Consensus 276 ~~-------~~~~Il~iDeiD~~~~ 293 (338)
+. .++.|||||||+.+..
T Consensus 212 ~aq~~~~l~krkTilFiDEiHRFNk 236 (554)
T KOG2028|consen 212 QAQNEKSLTKRKTILFIDEIHRFNK 236 (554)
T ss_pred HHHHHHhhhcceeEEEeHHhhhhhh
Confidence 66 3789999999999954
No 106
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.90 E-value=6e-09 Score=107.53 Aligned_cols=94 Identities=17% Similarity=0.334 Sum_probs=70.6
Q ss_pred CCCCCccccccCChhHHHHHHHHHHhh-hcCceeeeCCCCCCcHHHHHHHHHHhC-------------------------
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLERA-WKRGYLLFGPPGTGKSSLIAAMANYLH------------------------- 253 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~~-~~~g~LL~GppGtGKT~l~~aia~~l~------------------------- 253 (338)
...|.+|+++++.+..++.+...+... ....|||+||||+|||++++++|+.+.
T Consensus 9 kyRP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 9 KWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSA 88 (585)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCC
Confidence 567999999999999999888877753 234579999999999999999998873
Q ss_pred CcEEEEecCCcCCchHHHHHHHhc------CCCcEEEEcCCCccCC
Q 035959 254 FDVYDLELSSVEGNKHLRKVLIAT------ENKSILVVGDIDCCTE 293 (338)
Q Consensus 254 ~~~~~l~~~~~~~~~~l~~~l~~~------~~~~Il~iDeiD~~~~ 293 (338)
.+++.++........+++.+...+ ....||||||+|.+..
T Consensus 89 ~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~ 134 (585)
T PRK14950 89 VDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST 134 (585)
T ss_pred CeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH
Confidence 234555554434445566655433 2578999999998853
No 107
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.90 E-value=5.5e-09 Score=108.68 Aligned_cols=94 Identities=22% Similarity=0.454 Sum_probs=71.3
Q ss_pred CCCCCccccccCChhHHHHHHHHHHh-hhcCceeeeCCCCCCcHHHHHHHHHHhCC---------------------cEE
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLER-AWKRGYLLFGPPGTGKSSLIAAMANYLHF---------------------DVY 257 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~-~~~~g~LL~GppGtGKT~l~~aia~~l~~---------------------~~~ 257 (338)
..+|.+|+++++.+.+.+.+...+.. ..++.|||+||||||||++|+++|+.+.. +++
T Consensus 11 KyRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvi 90 (725)
T PRK07133 11 KYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDII 90 (725)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEE
Confidence 57899999999999999888888876 34567999999999999999999988742 234
Q ss_pred EEecCCcCCchHHHHHHHhcC------CCcEEEEcCCCccCC
Q 035959 258 DLELSSVEGNKHLRKVLIATE------NKSILVVGDIDCCTE 293 (338)
Q Consensus 258 ~l~~~~~~~~~~l~~~l~~~~------~~~Il~iDeiD~~~~ 293 (338)
.++..+-....+++.+...+. ...|+||||+|.+..
T Consensus 91 eidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~ 132 (725)
T PRK07133 91 EMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK 132 (725)
T ss_pred EEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH
Confidence 444433223445666665542 567999999998853
No 108
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.90 E-value=3.1e-09 Score=111.52 Aligned_cols=93 Identities=20% Similarity=0.362 Sum_probs=67.0
Q ss_pred CCCCCccccccCChhHHH---HHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCCchHHHHHHHh
Q 035959 200 LDHPSTFDTLAMDTDMKK---MIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKVLIA 276 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~---~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~~~~l~~~l~~ 276 (338)
..+|.+|+++++.++... .+...+.......++||||||||||++++++|+.++..++.+++... ...+++..+..
T Consensus 21 k~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-~i~dir~~i~~ 99 (725)
T PRK13341 21 RLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-GVKDLRAEVDR 99 (725)
T ss_pred hcCCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-hhHHHHHHHHH
Confidence 456999999999887653 34444443333578999999999999999999999988888876532 22233333322
Q ss_pred -------cCCCcEEEEcCCCccCC
Q 035959 277 -------TENKSILVVGDIDCCTE 293 (338)
Q Consensus 277 -------~~~~~Il~iDeiD~~~~ 293 (338)
.....+|||||||.+..
T Consensus 100 a~~~l~~~~~~~IL~IDEIh~Ln~ 123 (725)
T PRK13341 100 AKERLERHGKRTILFIDEVHRFNK 123 (725)
T ss_pred HHHHhhhcCCceEEEEeChhhCCH
Confidence 23567999999999864
No 109
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.89 E-value=2.2e-09 Score=114.81 Aligned_cols=89 Identities=20% Similarity=0.358 Sum_probs=74.5
Q ss_pred ccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHh----------CCcEEEEecCCcCC--------
Q 035959 205 TFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYL----------HFDVYDLELSSVEG-------- 266 (338)
Q Consensus 205 ~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l----------~~~~~~l~~~~~~~-------- 266 (338)
.++.+++.+...+++++.|.+..+++++|+||||||||+++.++|..+ +..++.++++.+..
T Consensus 177 ~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~ 256 (821)
T CHL00095 177 NLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEF 256 (821)
T ss_pred CCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHH
Confidence 567788888888999999988888899999999999999999999987 36889999876542
Q ss_pred chHHHHHHHhcC--CCcEEEEcCCCccCC
Q 035959 267 NKHLRKVLIATE--NKSILVVGDIDCCTE 293 (338)
Q Consensus 267 ~~~l~~~l~~~~--~~~Il~iDeiD~~~~ 293 (338)
+..+..++..+. .+.||||||||.+..
T Consensus 257 e~rl~~i~~~~~~~~~~ILfiDEih~l~~ 285 (821)
T CHL00095 257 EERLKRIFDEIQENNNIILVIDEVHTLIG 285 (821)
T ss_pred HHHHHHHHHHHHhcCCeEEEEecHHHHhc
Confidence 346777887653 578999999999986
No 110
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.89 E-value=7.3e-09 Score=106.86 Aligned_cols=94 Identities=15% Similarity=0.332 Sum_probs=71.4
Q ss_pred CCCCCccccccCChhHHHHHHHHHHh-hhcCceeeeCCCCCCcHHHHHHHHHHhCC------------------------
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLER-AWKRGYLLFGPPGTGKSSLIAAMANYLHF------------------------ 254 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~-~~~~g~LL~GppGtGKT~l~~aia~~l~~------------------------ 254 (338)
..+|.+|+++++++.+++.+...+.. ..+..|||+||||||||++|.++|+.+..
T Consensus 9 kyRP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~ 88 (620)
T PRK14954 9 KYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCR 88 (620)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHH
Confidence 45799999999999999888887766 44567999999999999999999998854
Q ss_pred --------cEEEEecCCcCCchHHHHHHHhc------CCCcEEEEcCCCccCC
Q 035959 255 --------DVYDLELSSVEGNKHLRKVLIAT------ENKSILVVGDIDCCTE 293 (338)
Q Consensus 255 --------~~~~l~~~~~~~~~~l~~~l~~~------~~~~Il~iDeiD~~~~ 293 (338)
++..++..+....++++.+...+ ..+.|+||||+|.+..
T Consensus 89 ~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~ 141 (620)
T PRK14954 89 DFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST 141 (620)
T ss_pred HHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH
Confidence 23334433333345666666555 3578999999999854
No 111
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.88 E-value=7.7e-09 Score=105.89 Aligned_cols=94 Identities=19% Similarity=0.365 Sum_probs=71.3
Q ss_pred CCCCCccccccCChhHHHHHHHHHHhh-hcCceeeeCCCCCCcHHHHHHHHHHhCC------------------------
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLERA-WKRGYLLFGPPGTGKSSLIAAMANYLHF------------------------ 254 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~~-~~~g~LL~GppGtGKT~l~~aia~~l~~------------------------ 254 (338)
..+|.+|+++++++..++.+...+... .++.||||||||+|||++++++|+.+..
T Consensus 9 kyRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~ 88 (563)
T PRK06647 9 KRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSL 88 (563)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCC
Confidence 467999999999999999998888763 3456999999999999999999998742
Q ss_pred cEEEEecCCcCCchHHHHHHHhc------CCCcEEEEcCCCccCC
Q 035959 255 DVYDLELSSVEGNKHLRKVLIAT------ENKSILVVGDIDCCTE 293 (338)
Q Consensus 255 ~~~~l~~~~~~~~~~l~~~l~~~------~~~~Il~iDeiD~~~~ 293 (338)
+++.++..+-....+++.+...+ ....|+||||+|.+..
T Consensus 89 dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~ 133 (563)
T PRK06647 89 DVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN 133 (563)
T ss_pred CeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH
Confidence 34555544323344566655332 3678999999998853
No 112
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.88 E-value=5e-09 Score=97.14 Aligned_cols=86 Identities=24% Similarity=0.417 Sum_probs=61.0
Q ss_pred cccCChhHHHHHHHHHHh-----hhcCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCC-------chHH-H
Q 035959 208 TLAMDTDMKKMIMDDLER-----AWKRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEG-------NKHL-R 271 (338)
Q Consensus 208 ~l~~~~~~k~~i~~~l~~-----~~~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~-------~~~l-~ 271 (338)
++-..+...+..+..+.. +.+.+++|+||||||||||+.|||+++ |..++.+...++.. +... .
T Consensus 80 d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~ 159 (254)
T COG1484 80 DFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEE 159 (254)
T ss_pred cccCCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHH
Confidence 344444444444444443 345789999999999999999999988 67888998887653 1122 2
Q ss_pred HHHHhcCCCcEEEEcCCCccCC
Q 035959 272 KVLIATENKSILVVGDIDCCTE 293 (338)
Q Consensus 272 ~~l~~~~~~~Il~iDeiD~~~~ 293 (338)
++...+.+..+|||||+-....
T Consensus 160 ~l~~~l~~~dlLIiDDlG~~~~ 181 (254)
T COG1484 160 KLLRELKKVDLLIIDDIGYEPF 181 (254)
T ss_pred HHHHHhhcCCEEEEecccCccC
Confidence 3444477899999999988654
No 113
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.88 E-value=5.1e-09 Score=112.35 Aligned_cols=92 Identities=20% Similarity=0.378 Sum_probs=75.9
Q ss_pred CCCccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHh----------CCcEEEEecCCcCC-----
Q 035959 202 HPSTFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYL----------HFDVYDLELSSVEG----- 266 (338)
Q Consensus 202 ~p~~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l----------~~~~~~l~~~~~~~----- 266 (338)
.|..++.+++.++..+++++-|.+..+++.+|+||||||||+++.++|..+ +.+++.+++..+..
T Consensus 168 ~~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~ 247 (852)
T TIGR03346 168 REGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYR 247 (852)
T ss_pred hCCCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhh
Confidence 456788899999888889988888778899999999999999999999986 67788888776542
Q ss_pred ---chHHHHHHHhc---CCCcEEEEcCCCccCC
Q 035959 267 ---NKHLRKVLIAT---ENKSILVVGDIDCCTE 293 (338)
Q Consensus 267 ---~~~l~~~l~~~---~~~~Il~iDeiD~~~~ 293 (338)
+..+.+++..+ ..+.||||||||.+..
T Consensus 248 g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~ 280 (852)
T TIGR03346 248 GEFEERLKAVLNEVTKSEGQIILFIDELHTLVG 280 (852)
T ss_pred hhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhc
Confidence 23567777665 3589999999999976
No 114
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.86 E-value=1.1e-08 Score=105.87 Aligned_cols=94 Identities=23% Similarity=0.399 Sum_probs=72.8
Q ss_pred CCCCCccccccCChhHHHHHHHHHHhh-hcCceeeeCCCCCCcHHHHHHHHHHhCC------------------------
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLERA-WKRGYLLFGPPGTGKSSLIAAMANYLHF------------------------ 254 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~~-~~~g~LL~GppGtGKT~l~~aia~~l~~------------------------ 254 (338)
...|.+|+++++.+.+++.+...+... ....+||+||||||||++|+++|+.+..
T Consensus 9 kyRP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~ 88 (620)
T PRK14948 9 KYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGN 88 (620)
T ss_pred HhCCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCC
Confidence 567899999999999998888887763 3467899999999999999999998753
Q ss_pred --cEEEEecCCcCCchHHHHHHHhcC------CCcEEEEcCCCccCC
Q 035959 255 --DVYDLELSSVEGNKHLRKVLIATE------NKSILVVGDIDCCTE 293 (338)
Q Consensus 255 --~~~~l~~~~~~~~~~l~~~l~~~~------~~~Il~iDeiD~~~~ 293 (338)
+++.++.........++.++..+. ...|+||||+|.+..
T Consensus 89 h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~ 135 (620)
T PRK14948 89 ALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST 135 (620)
T ss_pred CccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH
Confidence 455555543334456777776552 457999999998853
No 115
>PRK08116 hypothetical protein; Validated
Probab=98.86 E-value=7.1e-09 Score=96.89 Aligned_cols=62 Identities=27% Similarity=0.448 Sum_probs=47.9
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCC----------chHHHHHHHhcCCCcEEEEcCCCc
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEG----------NKHLRKVLIATENKSILVVGDIDC 290 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~----------~~~l~~~l~~~~~~~Il~iDeiD~ 290 (338)
.|++|+|+||||||||+.|+|+++ +.+++.++..++.. ......++.......+|+|||+..
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~ 189 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNADLLILDDLGA 189 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCCEEEEecccC
Confidence 569999999999999999999987 67888888765431 012234555666788999999964
No 116
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.86 E-value=4.1e-09 Score=95.67 Aligned_cols=91 Identities=20% Similarity=0.307 Sum_probs=61.1
Q ss_pred CCccccccCChh--HHHHHHHHHHhh-hc--CceeeeCCCCCCcHHHHHHHHHHh-----CCcEEEEecCCcCC------
Q 035959 203 PSTFDTLAMDTD--MKKMIMDDLERA-WK--RGYLLFGPPGTGKSSLIAAMANYL-----HFDVYDLELSSVEG------ 266 (338)
Q Consensus 203 p~~f~~l~~~~~--~k~~i~~~l~~~-~~--~g~LL~GppGtGKT~l~~aia~~l-----~~~~~~l~~~~~~~------ 266 (338)
.-+|++++..+. .--.....+... .. ..++||||+|+|||||++|+++++ +..+.++++.+...
T Consensus 4 ~~tFdnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~ 83 (219)
T PF00308_consen 4 KYTFDNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADAL 83 (219)
T ss_dssp T-SCCCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHH
T ss_pred CCccccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHH
Confidence 348999865432 223333444332 21 358999999999999999999876 56788888765432
Q ss_pred -chHHHHHHHhcCCCcEEEEcCCCccCC
Q 035959 267 -NKHLRKVLIATENKSILVVGDIDCCTE 293 (338)
Q Consensus 267 -~~~l~~~l~~~~~~~Il~iDeiD~~~~ 293 (338)
...+..+........+|+|||||.+..
T Consensus 84 ~~~~~~~~~~~~~~~DlL~iDDi~~l~~ 111 (219)
T PF00308_consen 84 RDGEIEEFKDRLRSADLLIIDDIQFLAG 111 (219)
T ss_dssp HTTSHHHHHHHHCTSSEEEEETGGGGTT
T ss_pred HcccchhhhhhhhcCCEEEEecchhhcC
Confidence 233455666777899999999999865
No 117
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.86 E-value=1.2e-08 Score=96.83 Aligned_cols=99 Identities=21% Similarity=0.287 Sum_probs=70.4
Q ss_pred CccccccCCCCCccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHhC-----CcEEEEecCCcCCc
Q 035959 193 DTRQSAILDHPSTFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYLH-----FDVYDLELSSVEGN 267 (338)
Q Consensus 193 ~~w~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l~-----~~~~~l~~~~~~~~ 267 (338)
..|. ..+.|.+|+++++.++..+.+...+.......++|+||||||||++++++++.+. ..++.++.++....
T Consensus 5 ~~w~--~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~ 82 (319)
T PRK00440 5 EIWV--EKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGI 82 (319)
T ss_pred Cccc--hhhCCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccch
Confidence 3575 4788999999999999998888888764445689999999999999999999873 23445544443322
Q ss_pred hHHHHHH----Hhc----CCCcEEEEcCCCccCC
Q 035959 268 KHLRKVL----IAT----ENKSILVVGDIDCCTE 293 (338)
Q Consensus 268 ~~l~~~l----~~~----~~~~Il~iDeiD~~~~ 293 (338)
..+...+ ... ..+.+|+|||+|.+..
T Consensus 83 ~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~ 116 (319)
T PRK00440 83 DVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS 116 (319)
T ss_pred HHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH
Confidence 2222222 211 2356999999998854
No 118
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.85 E-value=1e-08 Score=105.54 Aligned_cols=94 Identities=20% Similarity=0.439 Sum_probs=72.4
Q ss_pred CCCCCccccccCChhHHHHHHHHHHhh-hcCceeeeCCCCCCcHHHHHHHHHHhCC------------------------
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLERA-WKRGYLLFGPPGTGKSSLIAAMANYLHF------------------------ 254 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~~-~~~g~LL~GppGtGKT~l~~aia~~l~~------------------------ 254 (338)
.+.|.+|+++++++.+++.+...+... .+..+||+||+|+|||++++++|+.+..
T Consensus 17 KyRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~ 96 (598)
T PRK09111 17 KYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIM 96 (598)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHh
Confidence 578999999999999999888888763 3457999999999999999999998753
Q ss_pred -----cEEEEecCCcCCchHHHHHHHhcC------CCcEEEEcCCCccCC
Q 035959 255 -----DVYDLELSSVEGNKHLRKVLIATE------NKSILVVGDIDCCTE 293 (338)
Q Consensus 255 -----~~~~l~~~~~~~~~~l~~~l~~~~------~~~Il~iDeiD~~~~ 293 (338)
+++.++..+.....+++.++..+. ...|+||||+|.+..
T Consensus 97 ~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~ 146 (598)
T PRK09111 97 EGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST 146 (598)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH
Confidence 233444443334556777765552 578999999999853
No 119
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.85 E-value=1.3e-09 Score=91.29 Aligned_cols=64 Identities=33% Similarity=0.422 Sum_probs=48.1
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCCchHHHHHHH---------------hcCCCcEEEEcCCCccCC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKVLI---------------ATENKSILVVGDIDCCTE 293 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~~~~l~~~l~---------------~~~~~~Il~iDeiD~~~~ 293 (338)
+++|+||||||||++++.+|..++.+++.+.+....+..+|..... ....+.+++||||+.+.+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a~~ 79 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRAPP 79 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG--H
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccCCH
Confidence 4799999999999999999999999999999988766554431111 001578999999998753
No 120
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.85 E-value=2.9e-09 Score=95.78 Aligned_cols=98 Identities=22% Similarity=0.311 Sum_probs=73.7
Q ss_pred ccccccCCCCCccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHh-C----CcEEEEecCCcCCch
Q 035959 194 TRQSAILDHPSTFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYL-H----FDVYDLELSSVEGNK 268 (338)
Q Consensus 194 ~w~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l-~----~~~~~l~~~~~~~~~ 268 (338)
.|. ..+.|..+.+++++++.-.++.-......-.++++.||||||||+-+.++|..+ | -.+.+++.++-..-.
T Consensus 16 ~wV--eKYrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGID 93 (333)
T KOG0991|consen 16 PWV--EKYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGID 93 (333)
T ss_pred hHH--HhhCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccH
Confidence 364 588999999999999877766655555444578999999999999999999987 3 346788888766544
Q ss_pred HHH---HHHHhc------CCCcEEEEcCCCccCC
Q 035959 269 HLR---KVLIAT------ENKSILVVGDIDCCTE 293 (338)
Q Consensus 269 ~l~---~~l~~~------~~~~Il~iDeiD~~~~ 293 (338)
-++ +.|.+. .+..|+++||.|++..
T Consensus 94 vVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~ 127 (333)
T KOG0991|consen 94 VVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTA 127 (333)
T ss_pred HHHHHHHHHHHhhccCCCCceeEEEeeccchhhh
Confidence 443 333332 1467999999999976
No 121
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.84 E-value=1.2e-08 Score=102.89 Aligned_cols=94 Identities=18% Similarity=0.359 Sum_probs=70.5
Q ss_pred CCCCCccccccCChhHHHHHHHHHHh-hhcCceeeeCCCCCCcHHHHHHHHHHhCC------------------------
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLER-AWKRGYLLFGPPGTGKSSLIAAMANYLHF------------------------ 254 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~-~~~~g~LL~GppGtGKT~l~~aia~~l~~------------------------ 254 (338)
...|.+|+++++.+.+.+.+...+.. ..+..||||||||+|||++++++|..++.
T Consensus 9 kyRP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~ 88 (486)
T PRK14953 9 KYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFP 88 (486)
T ss_pred hhCCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCC
Confidence 46799999999999999988888876 34456899999999999999999998742
Q ss_pred cEEEEecCCcCCchHHHHHHHhc------CCCcEEEEcCCCccCC
Q 035959 255 DVYDLELSSVEGNKHLRKVLIAT------ENKSILVVGDIDCCTE 293 (338)
Q Consensus 255 ~~~~l~~~~~~~~~~l~~~l~~~------~~~~Il~iDeiD~~~~ 293 (338)
+++.++.++-....+++.+...+ ..+.|++|||+|.+..
T Consensus 89 d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~ 133 (486)
T PRK14953 89 DLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK 133 (486)
T ss_pred cEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH
Confidence 35555554433334455544433 2567999999998853
No 122
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.84 E-value=1.2e-08 Score=103.27 Aligned_cols=94 Identities=23% Similarity=0.393 Sum_probs=72.6
Q ss_pred CCCCCccccccCChhHHHHHHHHHHh-hhcCceeeeCCCCCCcHHHHHHHHHHhC------------------------C
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLER-AWKRGYLLFGPPGTGKSSLIAAMANYLH------------------------F 254 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~-~~~~g~LL~GppGtGKT~l~~aia~~l~------------------------~ 254 (338)
.++|.+|+++++++.+++.+...+.. ..+..||||||||+|||++++++|+.+. .
T Consensus 7 KyRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~ 86 (535)
T PRK08451 7 KYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHI 86 (535)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCC
Confidence 56799999999999999988888876 3345689999999999999999999872 2
Q ss_pred cEEEEecCCcCCchHHHHHHHhc------CCCcEEEEcCCCccCC
Q 035959 255 DVYDLELSSVEGNKHLRKVLIAT------ENKSILVVGDIDCCTE 293 (338)
Q Consensus 255 ~~~~l~~~~~~~~~~l~~~l~~~------~~~~Il~iDeiD~~~~ 293 (338)
+++.++.++-....+++.++... ....|++|||+|.+..
T Consensus 87 dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~ 131 (535)
T PRK08451 87 DIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK 131 (535)
T ss_pred eEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH
Confidence 46666654433445677776553 2467999999998854
No 123
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.84 E-value=1.2e-08 Score=101.99 Aligned_cols=94 Identities=22% Similarity=0.361 Sum_probs=70.0
Q ss_pred CCCCCccccccCChhHHHHHHHHHHh-hhcCceeeeCCCCCCcHHHHHHHHHHhCC------------------------
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLER-AWKRGYLLFGPPGTGKSSLIAAMANYLHF------------------------ 254 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~-~~~~g~LL~GppGtGKT~l~~aia~~l~~------------------------ 254 (338)
...|.+|+++++.+..++.+...+.. ..+..+|||||||+|||+++.++|+.+..
T Consensus 10 kyRP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~ 89 (451)
T PRK06305 10 KYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTS 89 (451)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCC
Confidence 46789999999999999888888876 34567999999999999999999998732
Q ss_pred -cEEEEecCCcCCchHHHHHHHhc------CCCcEEEEcCCCccCC
Q 035959 255 -DVYDLELSSVEGNKHLRKVLIAT------ENKSILVVGDIDCCTE 293 (338)
Q Consensus 255 -~~~~l~~~~~~~~~~l~~~l~~~------~~~~Il~iDeiD~~~~ 293 (338)
+++.++.......++++.+.... ..+.|+||||+|.+..
T Consensus 90 ~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~ 135 (451)
T PRK06305 90 LDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK 135 (451)
T ss_pred CceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH
Confidence 35555544333334454443322 3678999999998854
No 124
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.82 E-value=2.3e-09 Score=94.19 Aligned_cols=65 Identities=26% Similarity=0.470 Sum_probs=48.9
Q ss_pred cCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcC-------CchHHHHHHHhcCCCcEEEEcCCCccC
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVE-------GNKHLRKVLIATENKSILVVGDIDCCT 292 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~-------~~~~l~~~l~~~~~~~Il~iDeiD~~~ 292 (338)
+.+++|+||||||||||+.|+++++ |+.+.+++..++. ......+.+.......+|||||+....
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~dlLilDDlG~~~ 121 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKRVDLLILDDLGYEP 121 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTSSCEEEETCTSS-
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccccccEecccccceee
Confidence 5789999999999999999999877 7888888887654 123345566667788999999997553
No 125
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.81 E-value=8.4e-09 Score=103.25 Aligned_cols=95 Identities=18% Similarity=0.307 Sum_probs=62.3
Q ss_pred cCCCCCccccccCChhHH---HHHHHHHHhh--hcCceeeeCCCCCCcHHHHHHHHHHh-----CCcEEEEecCCcCCc-
Q 035959 199 ILDHPSTFDTLAMDTDMK---KMIMDDLERA--WKRGYLLFGPPGTGKSSLIAAMANYL-----HFDVYDLELSSVEGN- 267 (338)
Q Consensus 199 ~~~~p~~f~~l~~~~~~k---~~i~~~l~~~--~~~g~LL~GppGtGKT~l~~aia~~l-----~~~~~~l~~~~~~~~- 267 (338)
++.+..+|++++..+... ..+......+ ..++++||||||||||||++|+|+++ +..++++++.++...
T Consensus 114 ~l~~~~tfd~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~ 193 (450)
T PRK00149 114 PLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDF 193 (450)
T ss_pred CCCCCCcccccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHH
Confidence 455666899976543222 2222222222 12468999999999999999999998 456888887664321
Q ss_pred ------hHHHHHHHhcCCCcEEEEcCCCccCC
Q 035959 268 ------KHLRKVLIATENKSILVVGDIDCCTE 293 (338)
Q Consensus 268 ------~~l~~~l~~~~~~~Il~iDeiD~~~~ 293 (338)
.....+.......++|+|||||.+..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~ 225 (450)
T PRK00149 194 VNALRNNTMEEFKEKYRSVDVLLIDDIQFLAG 225 (450)
T ss_pred HHHHHcCcHHHHHHHHhcCCEEEEehhhhhcC
Confidence 11223334445788999999999865
No 126
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.80 E-value=1.1e-08 Score=101.04 Aligned_cols=94 Identities=18% Similarity=0.290 Sum_probs=59.8
Q ss_pred CCCCCccccccCChhHH---HHHHHHHHhhh--cCceeeeCCCCCCcHHHHHHHHHHh-----CCcEEEEecCCcCC---
Q 035959 200 LDHPSTFDTLAMDTDMK---KMIMDDLERAW--KRGYLLFGPPGTGKSSLIAAMANYL-----HFDVYDLELSSVEG--- 266 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k---~~i~~~l~~~~--~~g~LL~GppGtGKT~l~~aia~~l-----~~~~~~l~~~~~~~--- 266 (338)
+....+|++++..+... ..+.+....+. .++++||||||||||||++|+|+++ +..++++++.++..
T Consensus 103 l~~~~tfd~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~ 182 (405)
T TIGR00362 103 LNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFV 182 (405)
T ss_pred CCCCCcccccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHH
Confidence 45556899865433221 12222222221 2468999999999999999999987 56788888765431
Q ss_pred ----chHHHHHHHhcCCCcEEEEcCCCccCC
Q 035959 267 ----NKHLRKVLIATENKSILVVGDIDCCTE 293 (338)
Q Consensus 267 ----~~~l~~~l~~~~~~~Il~iDeiD~~~~ 293 (338)
...+..+.......++|+|||||.+..
T Consensus 183 ~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 183 NALRNNKMEEFKEKYRSVDLLLIDDIQFLAG 213 (405)
T ss_pred HHHHcCCHHHHHHHHHhCCEEEEehhhhhcC
Confidence 011222333344678999999998865
No 127
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.80 E-value=2.2e-08 Score=103.54 Aligned_cols=94 Identities=17% Similarity=0.423 Sum_probs=75.4
Q ss_pred CCCCCccccccCChhHHHHHHHHHHh-hhcCceeeeCCCCCCcHHHHHHHHHHhC-------------------------
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLER-AWKRGYLLFGPPGTGKSSLIAAMANYLH------------------------- 253 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~-~~~~g~LL~GppGtGKT~l~~aia~~l~------------------------- 253 (338)
.+.|.+|+++++.+.+++.+...+.. ..+..||||||+|+|||+++.++|+.+.
T Consensus 10 kyRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~ 89 (614)
T PRK14971 10 KYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRS 89 (614)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCC
Confidence 57899999999999999999888876 3445699999999999999999999874
Q ss_pred CcEEEEecCCcCCchHHHHHHHhcC------CCcEEEEcCCCccCC
Q 035959 254 FDVYDLELSSVEGNKHLRKVLIATE------NKSILVVGDIDCCTE 293 (338)
Q Consensus 254 ~~~~~l~~~~~~~~~~l~~~l~~~~------~~~Il~iDeiD~~~~ 293 (338)
.+++.++..+.....+++.++..+. ..-|+||||+|.+..
T Consensus 90 ~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~ 135 (614)
T PRK14971 90 YNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ 135 (614)
T ss_pred CceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH
Confidence 4666777665445567777775542 567999999999854
No 128
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.79 E-value=2.3e-08 Score=105.99 Aligned_cols=85 Identities=21% Similarity=0.255 Sum_probs=66.1
Q ss_pred ccCChhHHHHHHHHHHh------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCCchH-------------
Q 035959 209 LAMDTDMKKMIMDDLER------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGNKH------------- 269 (338)
Q Consensus 209 l~~~~~~k~~i~~~l~~------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~~~~------------- 269 (338)
..+.+.+|++|++.+.. .....++|+||||+|||++++++|..++.+++.++++.+.+...
T Consensus 324 ~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~ 403 (784)
T PRK10787 324 HYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMP 403 (784)
T ss_pred ccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCC
Confidence 67788899999988875 12235789999999999999999999999999999887654332
Q ss_pred --HHHHHHhcC-CCcEEEEcCCCccCC
Q 035959 270 --LRKVLIATE-NKSILVVGDIDCCTE 293 (338)
Q Consensus 270 --l~~~l~~~~-~~~Il~iDeiD~~~~ 293 (338)
+.+.+.... .+.|++|||||.+..
T Consensus 404 G~~~~~l~~~~~~~~villDEidk~~~ 430 (784)
T PRK10787 404 GKLIQKMAKVGVKNPLFLLDEIDKMSS 430 (784)
T ss_pred cHHHHHHHhcCCCCCEEEEEChhhccc
Confidence 223344433 567999999999975
No 129
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.79 E-value=4.4e-09 Score=91.88 Aligned_cols=89 Identities=21% Similarity=0.386 Sum_probs=64.5
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCC----cEEEEecCCcCC----chHHHHHHHhcC------CCcEEEEcCCCccCCc
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHF----DVYDLELSSVEG----NKHLRKVLIATE------NKSILVVGDIDCCTEL 294 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~----~~~~l~~~~~~~----~~~l~~~l~~~~------~~~Il~iDeiD~~~~~ 294 (338)
..+||.||+|||||.+++++|..+.. ++..+|++.... ..-+.+++.... ...||+|||||.+.+
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~~- 82 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAHP- 82 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCSH-
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhHHHhhccc-
Confidence 46799999999999999999999996 999999999887 444555555443 346999999999976
Q ss_pred ccccccccCCCCCCCCCCcchhhHHHHHHHhcCC
Q 035959 295 QDRSAQARTASPDWHSPKRDQITLSGLLNFTDGL 328 (338)
Q Consensus 295 ~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl 328 (338)
. .+. +.+.........||..||+=
T Consensus 83 -~-~~~--------~~~v~~~~V~~~LL~~le~g 106 (171)
T PF07724_consen 83 -S-NSG--------GADVSGEGVQNSLLQLLEGG 106 (171)
T ss_dssp -T-TTT--------CSHHHHHHHHHHHHHHHHHS
T ss_pred -c-ccc--------cchhhHHHHHHHHHHHhccc
Confidence 1 110 01112235577788888753
No 130
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.78 E-value=1.8e-08 Score=106.17 Aligned_cols=99 Identities=14% Similarity=0.325 Sum_probs=72.8
Q ss_pred ccCChhHHHHHHHHHHhh--------hc-CceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCCchHHHHHH-----
Q 035959 209 LAMDTDMKKMIMDDLERA--------WK-RGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKVL----- 274 (338)
Q Consensus 209 l~~~~~~k~~i~~~l~~~--------~~-~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~~~~l~~~l----- 274 (338)
++++++..+.+.+.+... .+ ..+||+||||||||.+++++|..++.+++.+++++......+.+++
T Consensus 460 ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~g 539 (758)
T PRK11034 460 VFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPG 539 (758)
T ss_pred EeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCC
Confidence 677888888888777741 12 3489999999999999999999999999999998765322222221
Q ss_pred ----------Hh---cCCCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhc-CCc
Q 035959 275 ----------IA---TENKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTD-GLW 329 (338)
Q Consensus 275 ----------~~---~~~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iD-gl~ 329 (338)
.+ ..+.+||+|||||.+.+ ...+.||+.|| |..
T Consensus 540 yvg~~~~g~L~~~v~~~p~sVlllDEieka~~----------------------~v~~~LLq~ld~G~l 586 (758)
T PRK11034 540 YVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP----------------------DVFNLLLQVMDNGTL 586 (758)
T ss_pred cccccccchHHHHHHhCCCcEEEeccHhhhhH----------------------HHHHHHHHHHhcCee
Confidence 11 13568999999999954 35677888887 543
No 131
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.78 E-value=2.2e-08 Score=90.47 Aligned_cols=97 Identities=24% Similarity=0.293 Sum_probs=82.3
Q ss_pred CccccccCCCCCccccccCChhHHHHHHHHHHh----hhcCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcC
Q 035959 193 DTRQSAILDHPSTFDTLAMDTDMKKMIMDDLER----AWKRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVE 265 (338)
Q Consensus 193 ~~w~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~----~~~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~ 265 (338)
+...+++-.+|-.+.++++-+..|+.+++...+ ....++||||..|||||||++|+-+++ +...+.|+-.++.
T Consensus 46 ~~L~pv~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~ 125 (287)
T COG2607 46 GYLEPVPDPDPIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLA 125 (287)
T ss_pred CcccCCCCCCCcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHh
Confidence 345567777778899999999999999888777 445789999999999999999999887 5678888888888
Q ss_pred CchHHHHHHHhcCCCcEEEEcCCC
Q 035959 266 GNKHLRKVLIATENKSILVVGDID 289 (338)
Q Consensus 266 ~~~~l~~~l~~~~~~~Il~iDeiD 289 (338)
+-..|...+...+.+-|||+||+-
T Consensus 126 ~Lp~l~~~Lr~~~~kFIlFcDDLS 149 (287)
T COG2607 126 TLPDLVELLRARPEKFILFCDDLS 149 (287)
T ss_pred hHHHHHHHHhcCCceEEEEecCCC
Confidence 878888888888899999999974
No 132
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.78 E-value=1.4e-08 Score=103.86 Aligned_cols=94 Identities=20% Similarity=0.280 Sum_probs=62.3
Q ss_pred CCCCCccccccCChhHH---HHHHHHHHhh--hcCceeeeCCCCCCcHHHHHHHHHHh-----CCcEEEEecCCcCC---
Q 035959 200 LDHPSTFDTLAMDTDMK---KMIMDDLERA--WKRGYLLFGPPGTGKSSLIAAMANYL-----HFDVYDLELSSVEG--- 266 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k---~~i~~~l~~~--~~~g~LL~GppGtGKT~l~~aia~~l-----~~~~~~l~~~~~~~--- 266 (338)
+....+|++++..+... ..+...+..+ +.+.++|||++|||||||++|+|+++ ++.++++++.++..
T Consensus 281 L~~~~TFDnFvvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~ 360 (617)
T PRK14086 281 LNPKYTFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFI 360 (617)
T ss_pred CCCCCCHhhhcCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHH
Confidence 44445899987654322 1222222221 23458999999999999999999987 56788888866542
Q ss_pred ----chHHHHHHHhcCCCcEEEEcCCCccCC
Q 035959 267 ----NKHLRKVLIATENKSILVVGDIDCCTE 293 (338)
Q Consensus 267 ----~~~l~~~l~~~~~~~Il~iDeiD~~~~ 293 (338)
...+..+.....+.++|+||||+.+..
T Consensus 361 ~al~~~~~~~f~~~y~~~DLLlIDDIq~l~g 391 (617)
T PRK14086 361 NSIRDGKGDSFRRRYREMDILLVDDIQFLED 391 (617)
T ss_pred HHHHhccHHHHHHHhhcCCEEEEehhccccC
Confidence 111223333445689999999999865
No 133
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.76 E-value=2.9e-08 Score=97.52 Aligned_cols=89 Identities=26% Similarity=0.376 Sum_probs=66.4
Q ss_pred ccccccCChhHHHHHHHHHHhh----------hcCceeeeCCCCCCcHHHHHHHHHHhCC--------------------
Q 035959 205 TFDTLAMDTDMKKMIMDDLERA----------WKRGYLLFGPPGTGKSSLIAAMANYLHF-------------------- 254 (338)
Q Consensus 205 ~f~~l~~~~~~k~~i~~~l~~~----------~~~g~LL~GppGtGKT~l~~aia~~l~~-------------------- 254 (338)
.|+++++.+..++.+.+.+... .+++|||+||||+|||+++.++|+.+..
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~ 82 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAG 82 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcC
Confidence 5889999999999998888874 4577999999999999999999987632
Q ss_pred ---cEEEEecCCc-CCchHHHHHHHhcC------CCcEEEEcCCCccCC
Q 035959 255 ---DVYDLELSSV-EGNKHLRKVLIATE------NKSILVVGDIDCCTE 293 (338)
Q Consensus 255 ---~~~~l~~~~~-~~~~~l~~~l~~~~------~~~Il~iDeiD~~~~ 293 (338)
+++.+..... ...++++.++..+. +..|+||||+|.+..
T Consensus 83 ~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~ 131 (394)
T PRK07940 83 THPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE 131 (394)
T ss_pred CCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH
Confidence 2334433211 23455677666542 456999999999964
No 134
>PRK09183 transposase/IS protein; Provisional
Probab=98.75 E-value=2.6e-08 Score=92.72 Aligned_cols=66 Identities=18% Similarity=0.255 Sum_probs=48.4
Q ss_pred cCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCC-------chHHHHHHHh-cCCCcEEEEcCCCccCC
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEG-------NKHLRKVLIA-TENKSILVVGDIDCCTE 293 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~-------~~~l~~~l~~-~~~~~Il~iDeiD~~~~ 293 (338)
..+++|+||||||||||+.+++..+ |+.+..++..++.. ...+...+.. ...+++|+|||++....
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~~~~ 178 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPF 178 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEcccccCCC
Confidence 4578999999999999999998764 77888877665431 1224445544 45778999999987643
No 135
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.75 E-value=2.1e-08 Score=100.08 Aligned_cols=95 Identities=15% Similarity=0.295 Sum_probs=60.4
Q ss_pred cCCCCCccccccCChhHH---HHHHHHHHhh-hcCceeeeCCCCCCcHHHHHHHHHHh-----CCcEEEEecCCcCCc--
Q 035959 199 ILDHPSTFDTLAMDTDMK---KMIMDDLERA-WKRGYLLFGPPGTGKSSLIAAMANYL-----HFDVYDLELSSVEGN-- 267 (338)
Q Consensus 199 ~~~~p~~f~~l~~~~~~k---~~i~~~l~~~-~~~g~LL~GppGtGKT~l~~aia~~l-----~~~~~~l~~~~~~~~-- 267 (338)
++.+..+|++++..+... ..+.+....+ +.++++||||||+|||||++|+|+++ +..++++++.++...
T Consensus 97 ~l~~~~tFdnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~ 176 (440)
T PRK14088 97 PLNPDYTFENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLV 176 (440)
T ss_pred CCCCCCcccccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHH
Confidence 345566899987544322 1222222222 23568999999999999999999986 456788877653311
Q ss_pred -----hHHHHHHHhcC-CCcEEEEcCCCccCC
Q 035959 268 -----KHLRKVLIATE-NKSILVVGDIDCCTE 293 (338)
Q Consensus 268 -----~~l~~~l~~~~-~~~Il~iDeiD~~~~ 293 (338)
..+........ ++.+|+|||++.+.+
T Consensus 177 ~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~ 208 (440)
T PRK14088 177 DSMKEGKLNEFREKYRKKVDVLLIDDVQFLIG 208 (440)
T ss_pred HHHhcccHHHHHHHHHhcCCEEEEechhhhcC
Confidence 11222222222 588999999998865
No 136
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.74 E-value=1.3e-08 Score=107.33 Aligned_cols=89 Identities=24% Similarity=0.368 Sum_probs=68.2
Q ss_pred ccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHh----------CCcEEEEecCCcCC--------
Q 035959 205 TFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYL----------HFDVYDLELSSVEG-------- 266 (338)
Q Consensus 205 ~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l----------~~~~~~l~~~~~~~-------- 266 (338)
.++.+++.++..+++++.|.+..+.++||+||||||||++++++|..+ +..++.+++..+..
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~ 263 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDF 263 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhH
Confidence 456678888888888888887667889999999999999999999875 45566666554432
Q ss_pred chHHHHHHHhc--CCCcEEEEcCCCccCC
Q 035959 267 NKHLRKVLIAT--ENKSILVVGDIDCCTE 293 (338)
Q Consensus 267 ~~~l~~~l~~~--~~~~Il~iDeiD~~~~ 293 (338)
+..++.++..+ ..+.||||||||.+..
T Consensus 264 e~rl~~l~~~l~~~~~~ILfIDEIh~L~g 292 (758)
T PRK11034 264 EKRFKALLKQLEQDTNSILFIDEIHTIIG 292 (758)
T ss_pred HHHHHHHHHHHHhcCCCEEEeccHHHHhc
Confidence 23456666544 3578999999999987
No 137
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.73 E-value=2.9e-08 Score=94.59 Aligned_cols=84 Identities=23% Similarity=0.290 Sum_probs=62.4
Q ss_pred cccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCCchHHHH---------------
Q 035959 208 TLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRK--------------- 272 (338)
Q Consensus 208 ~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~~~~l~~--------------- 272 (338)
+...+++..+.++..+. ..+.+||.||||||||++++++|..++.+++.+++....+..++..
T Consensus 46 ~y~f~~~~~~~vl~~l~--~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f 123 (327)
T TIGR01650 46 AYLFDKATTKAICAGFA--YDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEF 123 (327)
T ss_pred CccCCHHHHHHHHHHHh--cCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEE
Confidence 46677777777776664 3578999999999999999999999999999998887554322110
Q ss_pred ----HHHhcCCCcEEEEcCCCccCC
Q 035959 273 ----VLIATENKSILVVGDIDCCTE 293 (338)
Q Consensus 273 ----~l~~~~~~~Il~iDeiD~~~~ 293 (338)
+......+.+|++||||.+-+
T Consensus 124 ~~GpL~~A~~~g~illlDEin~a~p 148 (327)
T TIGR01650 124 RDGILPWALQHNVALCFDEYDAGRP 148 (327)
T ss_pred ecCcchhHHhCCeEEEechhhccCH
Confidence 001113567899999998854
No 138
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=4.7e-08 Score=91.59 Aligned_cols=66 Identities=27% Similarity=0.459 Sum_probs=56.0
Q ss_pred cCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC--------chHHHHHHHhcC------CCcEEEEcCCCccCC
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG--------NKHLRKVLIATE------NKSILVVGDIDCCTE 293 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~--------~~~l~~~l~~~~------~~~Il~iDeiD~~~~ 293 (338)
+.++||.||+|+|||.||+.+|+.++.|+-..|++.+.. +.-+.+++..+. .+.|++|||||.++.
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIar 176 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIAR 176 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhc
Confidence 578999999999999999999999999999999988763 233566666653 689999999999965
No 139
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.72 E-value=4.3e-08 Score=103.71 Aligned_cols=85 Identities=16% Similarity=0.329 Sum_probs=62.9
Q ss_pred cccCChhHHHHHHHHHHhh--------hcC-ceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCCch----------
Q 035959 208 TLAMDTDMKKMIMDDLERA--------WKR-GYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGNK---------- 268 (338)
Q Consensus 208 ~l~~~~~~k~~i~~~l~~~--------~~~-g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~~~---------- 268 (338)
.+++.++..+.+.+.+... .+. .+||+||||||||++++++|..++.+++.+++++.....
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~ 534 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPP 534 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCC
Confidence 4677777777777777651 123 379999999999999999999999999999988754321
Q ss_pred ---------HHHHHHHhcCCCcEEEEcCCCccCC
Q 035959 269 ---------HLRKVLIATENKSILVVGDIDCCTE 293 (338)
Q Consensus 269 ---------~l~~~l~~~~~~~Il~iDeiD~~~~ 293 (338)
.+.+.+. ..+.+||+|||||.+.+
T Consensus 535 gyvg~~~~~~l~~~~~-~~p~~VvllDEieka~~ 567 (731)
T TIGR02639 535 GYVGFEQGGLLTEAVR-KHPHCVLLLDEIEKAHP 567 (731)
T ss_pred CCcccchhhHHHHHHH-hCCCeEEEEechhhcCH
Confidence 1222222 23679999999998854
No 140
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=98.72 E-value=3.7e-08 Score=100.52 Aligned_cols=64 Identities=17% Similarity=0.336 Sum_probs=53.2
Q ss_pred CCCCCccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHh----------CCcEEEEecCC
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYL----------HFDVYDLELSS 263 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l----------~~~~~~l~~~~ 263 (338)
...|.+|+++++.++..+.+...+..+.+..+||+||||||||++|+++++++ +.+++.++++.
T Consensus 58 ~~rp~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~ 131 (531)
T TIGR02902 58 KTRPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATT 131 (531)
T ss_pred hhCcCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEcccc
Confidence 56789999999999888888776665666789999999999999999998753 35788888864
No 141
>PHA02244 ATPase-like protein
Probab=98.71 E-value=6.9e-08 Score=93.25 Aligned_cols=66 Identities=20% Similarity=0.349 Sum_probs=48.6
Q ss_pred cCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCC----c----CCchHH--HHHHHhcCCCcEEEEcCCCccCC
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSS----V----EGNKHL--RKVLIATENKSILVVGDIDCCTE 293 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~----~----~~~~~l--~~~l~~~~~~~Il~iDeiD~~~~ 293 (338)
...+||+||||||||+++++||..++.+++.++... + .....+ ..++.......+|+||||+.+.+
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~~GgvLiLDEId~a~p 194 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFKKGGLFFIDEIDASIP 194 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHhhcCCEEEEeCcCcCCH
Confidence 467999999999999999999999999999887421 0 001111 13334456789999999998854
No 142
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.71 E-value=4e-08 Score=98.12 Aligned_cols=94 Identities=20% Similarity=0.332 Sum_probs=60.5
Q ss_pred CCCCCccccccCChhHHH--HHHHHHHh-h-----h-cCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCC-
Q 035959 200 LDHPSTFDTLAMDTDMKK--MIMDDLER-A-----W-KRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEG- 266 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~--~i~~~l~~-~-----~-~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~- 266 (338)
+.+..+|++++..+.... .....+.. + + .++++||||||+|||||++|+|+++ +..+.+++...+..
T Consensus 104 l~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~ 183 (445)
T PRK12422 104 LDPLMTFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEH 183 (445)
T ss_pred CCccccccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHH
Confidence 445568999875433221 23333322 1 1 2568999999999999999999987 57888887654321
Q ss_pred ------chHHHHHHHhcCCCcEEEEcCCCccCC
Q 035959 267 ------NKHLRKVLIATENKSILVVGDIDCCTE 293 (338)
Q Consensus 267 ------~~~l~~~l~~~~~~~Il~iDeiD~~~~ 293 (338)
...+..+.......++|+||||+.+..
T Consensus 184 ~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~ 216 (445)
T PRK12422 184 LVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSG 216 (445)
T ss_pred HHHHHhcchHHHHHHHcccCCEEEEcchhhhcC
Confidence 111222222245788999999999854
No 143
>PRK06620 hypothetical protein; Validated
Probab=98.71 E-value=3e-08 Score=89.66 Aligned_cols=82 Identities=17% Similarity=0.220 Sum_probs=49.7
Q ss_pred CCCCCccccccCChhHH--HHHHHHHHhhh-----cCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCCchHHHH
Q 035959 200 LDHPSTFDTLAMDTDMK--KMIMDDLERAW-----KRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRK 272 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k--~~i~~~l~~~~-----~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~~~~l~~ 272 (338)
..+.-+|++++..+.-. -.........| .+.++||||||||||||++|+|+..+.. .+..... .. .
T Consensus 9 ~~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~~~~~--~~---~ 81 (214)
T PRK06620 9 TSSKYHPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAY--IIKDIFF--NE---E 81 (214)
T ss_pred CCCCCCchhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCCE--Ecchhhh--ch---h
Confidence 34445899987655221 12222222223 2558999999999999999999988752 2221111 11 1
Q ss_pred HHHhcCCCcEEEEcCCCcc
Q 035959 273 VLIATENKSILVVGDIDCC 291 (338)
Q Consensus 273 ~l~~~~~~~Il~iDeiD~~ 291 (338)
. ....++|+|||||.+
T Consensus 82 ~---~~~~d~lliDdi~~~ 97 (214)
T PRK06620 82 I---LEKYNAFIIEDIENW 97 (214)
T ss_pred H---HhcCCEEEEeccccc
Confidence 1 134589999999954
No 144
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.70 E-value=4.4e-08 Score=97.98 Aligned_cols=91 Identities=15% Similarity=0.326 Sum_probs=59.8
Q ss_pred CCccccccCChhHHH---HHHHHHHhh--hcCceeeeCCCCCCcHHHHHHHHHHh-----CCcEEEEecCCcCCc-----
Q 035959 203 PSTFDTLAMDTDMKK---MIMDDLERA--WKRGYLLFGPPGTGKSSLIAAMANYL-----HFDVYDLELSSVEGN----- 267 (338)
Q Consensus 203 p~~f~~l~~~~~~k~---~i~~~l~~~--~~~g~LL~GppGtGKT~l~~aia~~l-----~~~~~~l~~~~~~~~----- 267 (338)
+.+|++++..+.... .+......+ ..++++|||++|+|||||++|+++++ +..++++++.++...
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l 190 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDIL 190 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHH
Confidence 468888875543221 111111212 12568999999999999999999965 467788877664421
Q ss_pred ----hHHHHHHHhcCCCcEEEEcCCCccCC
Q 035959 268 ----KHLRKVLIATENKSILVVGDIDCCTE 293 (338)
Q Consensus 268 ----~~l~~~l~~~~~~~Il~iDeiD~~~~ 293 (338)
..+..........++|+||||+.+..
T Consensus 191 ~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~ 220 (450)
T PRK14087 191 QKTHKEIEQFKNEICQNDVLIIDDVQFLSY 220 (450)
T ss_pred HHhhhHHHHHHHHhccCCEEEEeccccccC
Confidence 22333444456788999999998864
No 145
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.68 E-value=7.7e-08 Score=83.79 Aligned_cols=83 Identities=19% Similarity=0.225 Sum_probs=58.7
Q ss_pred cCChhHHHHHHHHHHh--hhcCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCCchHHHHHHHh--------
Q 035959 210 AMDTDMKKMIMDDLER--AWKRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEGNKHLRKVLIA-------- 276 (338)
Q Consensus 210 ~~~~~~k~~i~~~l~~--~~~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~~~~l~~~l~~-------- 276 (338)
++..+.-+++++.+.. ..+..+||+|++||||+.+|++|.+.. +.+++.++|+.+.. +.+...+..
T Consensus 2 iG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~-~~~e~~LFG~~~~~~~~ 80 (168)
T PF00158_consen 2 IGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPE-ELLESELFGHEKGAFTG 80 (168)
T ss_dssp S--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-H-HHHHHHHHEBCSSSSTT
T ss_pred EeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhc-chhhhhhhccccccccc
Confidence 4455556667777776 556789999999999999999999976 46899999998753 334333332
Q ss_pred ----------cCCCcEEEEcCCCccCC
Q 035959 277 ----------TENKSILVVGDIDCCTE 293 (338)
Q Consensus 277 ----------~~~~~Il~iDeiD~~~~ 293 (338)
......|+||||+.+..
T Consensus 81 ~~~~~~G~l~~A~~GtL~Ld~I~~L~~ 107 (168)
T PF00158_consen 81 ARSDKKGLLEQANGGTLFLDEIEDLPP 107 (168)
T ss_dssp TSSEBEHHHHHTTTSEEEEETGGGS-H
T ss_pred cccccCCceeeccceEEeecchhhhHH
Confidence 13678999999999975
No 146
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.67 E-value=2.4e-08 Score=100.26 Aligned_cols=94 Identities=22% Similarity=0.458 Sum_probs=75.0
Q ss_pred CCCCCccccccCChhHHHHHHHHHHh-hhcCceeeeCCCCCCcHHHHHHHHHHhCC------------------------
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLER-AWKRGYLLFGPPGTGKSSLIAAMANYLHF------------------------ 254 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~-~~~~g~LL~GppGtGKT~l~~aia~~l~~------------------------ 254 (338)
..+|..|+++++.+.+.+.+.+.+.. .-..+|||.||.|||||++++.+|+.++.
T Consensus 9 KyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~ 88 (515)
T COG2812 9 KYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLI 88 (515)
T ss_pred HhCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcc
Confidence 35699999999999999988888877 34578999999999999999999998742
Q ss_pred cEEEEecCCcCCchHHHHHHHhcC------CCcEEEEcCCCccCC
Q 035959 255 DVYDLELSSVEGNKHLRKVLIATE------NKSILVVGDIDCCTE 293 (338)
Q Consensus 255 ~~~~l~~~~~~~~~~l~~~l~~~~------~~~Il~iDeiD~~~~ 293 (338)
+++++|..+-...++++.+.++.. +.-|++|||+|.+..
T Consensus 89 DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~ 133 (515)
T COG2812 89 DVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSK 133 (515)
T ss_pred cchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhH
Confidence 344444444445677888888773 678999999999864
No 147
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.67 E-value=1.1e-08 Score=84.48 Aligned_cols=75 Identities=24% Similarity=0.271 Sum_probs=46.9
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCCchHHHHH--HHhc----------CCCcEEEEcCCCccCCcccc
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKV--LIAT----------ENKSILVVGDIDCCTELQDR 297 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~~~~l~~~--l~~~----------~~~~Il~iDeiD~~~~~~~r 297 (338)
.+||+|+||+|||++++++|..++.++.+|.++.-...+++.-. +... --..|+++|||.+..+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNrapp---- 76 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRAPP---- 76 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS-H----
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccCCH----
Confidence 47999999999999999999999999999988643322222110 0000 1257999999999876
Q ss_pred cccccCCCCCCCCCCcchhhHHHHHHHhc
Q 035959 298 SAQARTASPDWHSPKRDQITLSGLLNFTD 326 (338)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~ls~lLn~iD 326 (338)
.+.|.||.+|.
T Consensus 77 ------------------ktQsAlLeam~ 87 (131)
T PF07726_consen 77 ------------------KTQSALLEAME 87 (131)
T ss_dssp ------------------HHHHHHHHHHH
T ss_pred ------------------HHHHHHHHHHH
Confidence 67788888874
No 148
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.67 E-value=3.9e-08 Score=79.91 Aligned_cols=66 Identities=26% Similarity=0.408 Sum_probs=49.2
Q ss_pred cCceeeeCCCCCCcHHHHHHHHHHhCCc---EEEEecCCcCC--------------------chHHHHHHHhcC--CCcE
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMANYLHFD---VYDLELSSVEG--------------------NKHLRKVLIATE--NKSI 282 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia~~l~~~---~~~l~~~~~~~--------------------~~~l~~~l~~~~--~~~I 282 (338)
++.++|+||||||||++++++|..+... ++.+++..... ......++..+. .+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 3578999999999999999999999765 88887765321 122333333333 3599
Q ss_pred EEEcCCCccCC
Q 035959 283 LVVGDIDCCTE 293 (338)
Q Consensus 283 l~iDeiD~~~~ 293 (338)
|+|||++.+..
T Consensus 82 iiiDei~~~~~ 92 (148)
T smart00382 82 LILDEITSLLD 92 (148)
T ss_pred EEEECCcccCC
Confidence 99999999976
No 149
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.64 E-value=8.1e-08 Score=94.11 Aligned_cols=37 Identities=22% Similarity=0.466 Sum_probs=33.8
Q ss_pred cCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCc
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSV 264 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~ 264 (338)
++++||+||||||||++++++|..++.+++.++.+.+
T Consensus 47 p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~ 83 (441)
T TIGR00390 47 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 83 (441)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCeEEEeeccee
Confidence 4789999999999999999999999999999997644
No 150
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.64 E-value=7.2e-08 Score=94.50 Aligned_cols=57 Identities=21% Similarity=0.450 Sum_probs=46.2
Q ss_pred ccCChhHHHHHHHHHHhhh--------------cCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcC
Q 035959 209 LAMDTDMKKMIMDDLERAW--------------KRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVE 265 (338)
Q Consensus 209 l~~~~~~k~~i~~~l~~~~--------------~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~ 265 (338)
+++.++.|+.+...+...| +.++||+||||||||++++++|..++.+++.++++.+.
T Consensus 17 IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~ 87 (443)
T PRK05201 17 IIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFT 87 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhc
Confidence 6777777877776664421 46899999999999999999999999999999876443
No 151
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.64 E-value=1e-07 Score=91.57 Aligned_cols=65 Identities=25% Similarity=0.316 Sum_probs=50.2
Q ss_pred cCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCC---------chHHHHHHHhcCCCcEEEEcCCCccC
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEG---------NKHLRKVLIATENKSILVVGDIDCCT 292 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~---------~~~l~~~l~~~~~~~Il~iDeiD~~~ 292 (338)
..+++|+||||||||||+.|+|+++ |..+.+++..++.. ..+....+..+....+|||||+....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~e~ 259 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLINCDLLIIDDLGTEK 259 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhccCCEEEEeccCCCC
Confidence 4789999999999999999999987 77888887766532 11222235556678999999998764
No 152
>PRK06921 hypothetical protein; Provisional
Probab=98.63 E-value=7.3e-08 Score=90.03 Aligned_cols=63 Identities=29% Similarity=0.386 Sum_probs=47.0
Q ss_pred cCceeeeCCCCCCcHHHHHHHHHHh----CCcEEEEecCCcCCc-----hHHHHHHHhcCCCcEEEEcCCCc
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMANYL----HFDVYDLELSSVEGN-----KHLRKVLIATENKSILVVGDIDC 290 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia~~l----~~~~~~l~~~~~~~~-----~~l~~~l~~~~~~~Il~iDeiD~ 290 (338)
..+++|+||||||||||+.|+|+++ +..+++++..++... ..+...+......++|||||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~~~~~~~~~~~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFDLLEAKLNRMKKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 4679999999999999999999987 567777776543221 12233445556789999999955
No 153
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.63 E-value=1.4e-07 Score=91.52 Aligned_cols=86 Identities=15% Similarity=0.273 Sum_probs=60.9
Q ss_pred ccccCChhHHHHHHHHHHh----hhcCceeeeCCCCCCcHHHHHHHHHHhC---------CcEEEEecCCcCCchH----
Q 035959 207 DTLAMDTDMKKMIMDDLER----AWKRGYLLFGPPGTGKSSLIAAMANYLH---------FDVYDLELSSVEGNKH---- 269 (338)
Q Consensus 207 ~~l~~~~~~k~~i~~~l~~----~~~~g~LL~GppGtGKT~l~~aia~~l~---------~~~~~l~~~~~~~~~~---- 269 (338)
+.+.+.++..+.+...+.. ..+..++++||||||||++++++++++. ..++.+++....+...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 4677888878777777765 2335789999999999999999998763 4678888876543111
Q ss_pred ----------------------HHHHHHh---cCCCcEEEEcCCCccC
Q 035959 270 ----------------------LRKVLIA---TENKSILVVGDIDCCT 292 (338)
Q Consensus 270 ----------------------l~~~l~~---~~~~~Il~iDeiD~~~ 292 (338)
+..++.. ..++.||+|||+|.+.
T Consensus 95 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~ 142 (365)
T TIGR02928 95 LANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLV 142 (365)
T ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhc
Confidence 1111121 2356799999999996
No 154
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.61 E-value=2.7e-07 Score=90.40 Aligned_cols=86 Identities=21% Similarity=0.278 Sum_probs=59.3
Q ss_pred ccccCChhHHHHHHHHHHhh----hcCceeeeCCCCCCcHHHHHHHHHHh-----CCcEEEEecCCcCCc----------
Q 035959 207 DTLAMDTDMKKMIMDDLERA----WKRGYLLFGPPGTGKSSLIAAMANYL-----HFDVYDLELSSVEGN---------- 267 (338)
Q Consensus 207 ~~l~~~~~~k~~i~~~l~~~----~~~g~LL~GppGtGKT~l~~aia~~l-----~~~~~~l~~~~~~~~---------- 267 (338)
+.+.+.++..+++...+... .+..++++||||||||++++.+++.+ +..++.+++....+.
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 109 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQ 109 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHH
Confidence 45667776667777766542 23568999999999999999999887 467888888654321
Q ss_pred -------------hHH-HH---HHHhcCCCcEEEEcCCCccC
Q 035959 268 -------------KHL-RK---VLIATENKSILVVGDIDCCT 292 (338)
Q Consensus 268 -------------~~l-~~---~l~~~~~~~Il~iDeiD~~~ 292 (338)
.++ .. .+.....+.||+|||+|.+.
T Consensus 110 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~ 151 (394)
T PRK00411 110 LFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLF 151 (394)
T ss_pred hcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhh
Confidence 111 11 11122345799999999996
No 155
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=1.5e-07 Score=91.45 Aligned_cols=66 Identities=26% Similarity=0.448 Sum_probs=57.9
Q ss_pred cCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC--------chHHHHHHHhcC------CCcEEEEcCCCccCC
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG--------NKHLRKVLIATE------NKSILVVGDIDCCTE 293 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~--------~~~l~~~l~~~~------~~~Il~iDeiD~~~~ 293 (338)
+.++||.||+|+|||.|++.+|+-++.|+...||+.+.. ++-+.+++..+. +..|++|||+|.+..
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 578999999999999999999999999999999999873 345677777663 789999999999984
No 156
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=1.4e-07 Score=96.20 Aligned_cols=87 Identities=25% Similarity=0.413 Sum_probs=62.8
Q ss_pred ccccCChhHHHHHHHHHHhh--hcCceeeeCCCCCCcHHHHHHHHHHhC----CcEEEEecCCcCCc--hHHHHH----H
Q 035959 207 DTLAMDTDMKKMIMDDLERA--WKRGYLLFGPPGTGKSSLIAAMANYLH----FDVYDLELSSVEGN--KHLRKV----L 274 (338)
Q Consensus 207 ~~l~~~~~~k~~i~~~l~~~--~~~g~LL~GppGtGKT~l~~aia~~l~----~~~~~l~~~~~~~~--~~l~~~----l 274 (338)
.+++..+..|+...++...| ....+||+||+|+|||.|++++++++- +.+..++|+.+... +.+.+. |
T Consensus 408 ~d~i~~~s~kke~~n~~~spv~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vf 487 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSPVFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVF 487 (952)
T ss_pred CceeecchhhhhhhhhhcccccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHH
Confidence 34555566666666555443 335689999999999999999999985 45678888887742 333333 3
Q ss_pred Hhc--CCCcEEEEcCCCccCC
Q 035959 275 IAT--ENKSILVVGDIDCCTE 293 (338)
Q Consensus 275 ~~~--~~~~Il~iDeiD~~~~ 293 (338)
.+. -.|+||++||+|+++.
T Consensus 488 se~~~~~PSiIvLDdld~l~~ 508 (952)
T KOG0735|consen 488 SEALWYAPSIIVLDDLDCLAS 508 (952)
T ss_pred HHHHhhCCcEEEEcchhhhhc
Confidence 333 3899999999999987
No 157
>PF08740 BCS1_N: BCS1 N terminal; InterPro: IPR014851 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. This domain is found at the N terminus of the mitochondrial BSC1 subfamily, belonging to the AAA ATPase family. At2g21640 and BCS1 are both highly stress responsive genes which encode mitochondrial proteins. The promoter of BCS1 was not responsive to H2O2 or rotenone, but highly responsive to salicylic acid (SA). The SA dependent pathway represented by BCS1 is one of at least three distinctive pathways to regulate mitochondrial stress response at a transcriptional level []. The BCS1 product is a mitochondrial protein required for the assembly of respiratory complex III []. BCS1, a component of the inner membrane of mitochondria, belongs to the group of proteins with internal, noncleavable import signals. It has a transmembrane domain (amino acid residues 51 to 68), a presequence type helix (residues 69 to 83), and an import auxiliary region (residues 84 to 126) [].
Probab=98.58 E-value=6.1e-06 Score=72.77 Aligned_cols=136 Identities=9% Similarity=0.189 Sum_probs=94.7
Q ss_pred cEEEEeccCCCCCccHHHHHHHHHhCCC-CCCCCCeeEeecCC----------------------CCCceEEEccCCceE
Q 035959 52 STLVIEEYDDGLNRNKLFKAAKLYLEPK-IPPNVNRIKINLPK----------------------KESEVSLSVEKNQAV 108 (338)
Q Consensus 52 ~ti~i~e~~~~~~~n~~y~a~~~YLs~~-~~~~~~rL~~~~~~----------------------~~~~~~~~l~~ge~v 108 (338)
.|+.|++. +++|+.+..||+.+ ....++++.+.+.. +...+.+.+..|. .
T Consensus 27 ~sv~I~~~------D~~Y~~lm~Wls~q~~~~~~r~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~G~-h 99 (187)
T PF08740_consen 27 SSVEIPSD------DEAYDWLMRWLSSQPFSKRSRHLSATTRSNSSWDDDESDDEDSWDTNTSDDKKKPIRFTPSPGT-H 99 (187)
T ss_pred EEEEECCC------CHHHHHHHHHHhhCCcccccceeEEEeecccccccccccccchhccccccCCcCCeEEEeCCCC-E
Confidence 57777765 69999999999998 67778888887732 3567889999994 4
Q ss_pred EEeecCeEEEEEEEeecCCCCCcCCCCCCCCCCCcceEEEEEcCcchhhHHhhhhHHHHHHhHHH--HHhccceeeeecc
Q 035959 109 FDVFNGVRLKWKFELKPAPDQELCNNGNYMFKDRVPCFELRFHKKHKETVLGTYIPHILKKSKEL--SKKKKTLKLFTLN 186 (338)
Q Consensus 109 ~D~f~G~~~~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~~~~vl~~~l~~v~~~~~~~--~~~~~~~~l~~~~ 186 (338)
...|+| +|..+.+..+...... .. ..+.+.++|++....++ + |..+++++++. +++.....||...
T Consensus 100 ~F~y~G---~~~~~~R~~~~~~~~~---~~-~~~~e~l~l~~lg~s~~-~----l~~ll~ear~~~~~~~~~~t~Iy~~~ 167 (187)
T PF08740_consen 100 WFWYKG---RWFWFSRQRESNSYNS---WT-GAPDETLTLSCLGRSPK-P----LKDLLEEAREYYLKKQKGKTTIYRAD 167 (187)
T ss_pred EEEECC---EEEEEEEEeccccccc---cC-CCCceEEEEEEecCCHH-H----HHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 558999 5787777764332221 11 34589999999998765 4 44555666554 3344445699985
Q ss_pred CccCCCCccccccCCCCCccccc
Q 035959 187 CNRINHDTRQSAILDHPSTFDTL 209 (338)
Q Consensus 187 ~~~~~~~~w~~~~~~~p~~f~~l 209 (338)
+.. ..|....-+++++++++
T Consensus 168 ~~~---~~W~~~~~r~~RplsTV 187 (187)
T PF08740_consen 168 GSE---YRWRRVASRPKRPLSTV 187 (187)
T ss_pred CCC---CCCcCCCCcCCCCCCCC
Confidence 211 15999887888888764
No 158
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.57 E-value=2.3e-07 Score=96.29 Aligned_cols=64 Identities=16% Similarity=0.366 Sum_probs=53.6
Q ss_pred CCCCccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHh----------CCcEEEEecCCc
Q 035959 201 DHPSTFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYL----------HFDVYDLELSSV 264 (338)
Q Consensus 201 ~~p~~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l----------~~~~~~l~~~~~ 264 (338)
..|.+|+++++..+..+.+++.+..+.+..++|+||||||||++++++++.. +.+++.+++..+
T Consensus 148 ~rp~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l 221 (615)
T TIGR02903 148 LRPRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTL 221 (615)
T ss_pred cCcCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhc
Confidence 4588999999988888888888876777789999999999999999998766 346788887765
No 159
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.53 E-value=3.4e-07 Score=88.01 Aligned_cols=95 Identities=22% Similarity=0.252 Sum_probs=65.0
Q ss_pred ccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCCchHH------HHHH--Hh----
Q 035959 209 LAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHL------RKVL--IA---- 276 (338)
Q Consensus 209 l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~~~~l------~~~l--~~---- 276 (338)
+++.+.....+...+. ..+.+||-||||||||.+++++|..++.+++.++|..-...+++ .... ..
T Consensus 26 ~~g~~~~~~~~l~a~~--~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~ 103 (329)
T COG0714 26 VVGDEEVIELALLALL--AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRF 103 (329)
T ss_pred eeccHHHHHHHHHHHH--cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEE
Confidence 3444444444333332 35789999999999999999999999999999999975543332 1111 00
Q ss_pred cC---CC---cEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcC
Q 035959 277 TE---NK---SILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDG 327 (338)
Q Consensus 277 ~~---~~---~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDg 327 (338)
.. -. +|+++|||+...+ .+.+.||..|+.
T Consensus 104 ~~gpl~~~~~~ill~DEInra~p----------------------~~q~aLl~~l~e 138 (329)
T COG0714 104 VPGPLFAAVRVILLLDEINRAPP----------------------EVQNALLEALEE 138 (329)
T ss_pred ecCCcccccceEEEEeccccCCH----------------------HHHHHHHHHHhC
Confidence 01 12 3999999999865 566777877764
No 160
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.51 E-value=7e-07 Score=87.06 Aligned_cols=53 Identities=26% Similarity=0.462 Sum_probs=46.9
Q ss_pred CCCCCccccccCChhHHHHHHHHHHh-hhcCceeeeCCCCCCcHHHHHHHHHHh
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLER-AWKRGYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~-~~~~g~LL~GppGtGKT~l~~aia~~l 252 (338)
..+|++++++++.+..++.+.+.+.. ..+..+||+||+|+||++++.++|+.+
T Consensus 12 ~~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~L 65 (365)
T PRK07471 12 APHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFL 65 (365)
T ss_pred CCCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 36899999999999999999888877 335679999999999999999999977
No 161
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.50 E-value=3.7e-07 Score=97.94 Aligned_cols=86 Identities=19% Similarity=0.362 Sum_probs=62.1
Q ss_pred ccccCChhHHHHHHHHHHhh--------hcCc-eeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCCch------
Q 035959 207 DTLAMDTDMKKMIMDDLERA--------WKRG-YLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEGNK------ 268 (338)
Q Consensus 207 ~~l~~~~~~k~~i~~~l~~~--------~~~g-~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~~~------ 268 (338)
+.+++.++..+.+.+.+... .+.| +||+||||||||++++++|..+ ...++.+++++.....
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~ 645 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLK 645 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhcccc
Confidence 34678888888887777651 2334 7999999999999999999998 3467888887654221
Q ss_pred -------------HHHHHHHhcCCCcEEEEcCCCccCC
Q 035959 269 -------------HLRKVLIATENKSILVVGDIDCCTE 293 (338)
Q Consensus 269 -------------~l~~~l~~~~~~~Il~iDeiD~~~~ 293 (338)
.|...+.. .+.+||+|||||.+.+
T Consensus 646 g~~~gyvg~~~~g~L~~~v~~-~p~svvllDEieka~~ 682 (852)
T TIGR03345 646 GSPPGYVGYGEGGVLTEAVRR-KPYSVVLLDEVEKAHP 682 (852)
T ss_pred CCCCCcccccccchHHHHHHh-CCCcEEEEechhhcCH
Confidence 23333333 5779999999997654
No 162
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.49 E-value=3.3e-07 Score=88.12 Aligned_cols=52 Identities=31% Similarity=0.468 Sum_probs=42.7
Q ss_pred CCCCccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHh
Q 035959 201 DHPSTFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 201 ~~p~~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l 252 (338)
+.|..|+.+++.++.++.+.-.+..+...++||.||||||||++++++|..+
T Consensus 2 ~~~~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 2 KKPFPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 3577899999999888877654443334679999999999999999999988
No 163
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=2.5e-07 Score=96.61 Aligned_cols=97 Identities=20% Similarity=0.348 Sum_probs=75.7
Q ss_pred cccCChhHHHHHHHHHHh------hh--c-CceeeeCCCCCCcHHHHHHHHHHhC---CcEEEEecCCcCCchHHHHHHH
Q 035959 208 TLAMDTDMKKMIMDDLER------AW--K-RGYLLFGPPGTGKSSLIAAMANYLH---FDVYDLELSSVEGNKHLRKVLI 275 (338)
Q Consensus 208 ~l~~~~~~k~~i~~~l~~------~~--~-~g~LL~GppGtGKT~l~~aia~~l~---~~~~~l~~~~~~~~~~l~~~l~ 275 (338)
.++++++.-..+.+.+.+ .. | ..+||.||+|+|||-|++++|..+. -.++.+|+++......+.+++-
T Consensus 492 rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIG 571 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIG 571 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhC
Confidence 467777777777776666 11 2 2468999999999999999999996 7899999999887666666654
Q ss_pred hc------------------CCCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhc
Q 035959 276 AT------------------ENKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTD 326 (338)
Q Consensus 276 ~~------------------~~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iD 326 (338)
.. .+.|||++|||+..-+ ..++-||+.+|
T Consensus 572 aPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHp----------------------dV~nilLQVlD 618 (786)
T COG0542 572 APPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHP----------------------DVFNLLLQVLD 618 (786)
T ss_pred CCCCCceeccccchhHhhhcCCCeEEEechhhhcCH----------------------HHHHHHHHHhc
Confidence 33 2579999999999865 67788888887
No 164
>PRK09087 hypothetical protein; Validated
Probab=98.48 E-value=3e-07 Score=83.88 Aligned_cols=85 Identities=18% Similarity=0.230 Sum_probs=52.0
Q ss_pred cCCCCCccccccCChhHHHHHHHHHHh--hhcC-ceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCCchHHHHHHH
Q 035959 199 ILDHPSTFDTLAMDTDMKKMIMDDLER--AWKR-GYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKVLI 275 (338)
Q Consensus 199 ~~~~p~~f~~l~~~~~~k~~i~~~l~~--~~~~-g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~~~~l~~~l~ 275 (338)
+.....+|++++..+.-. .++..+.+ .|.. .++|+||+|+|||||++++|+..+.. +++...+.. ..+.
T Consensus 13 ~~~~~~~~~~Fi~~~~N~-~a~~~l~~~~~~~~~~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~~-----~~~~ 84 (226)
T PRK09087 13 SHDPAYGRDDLLVTESNR-AAVSLVDHWPNWPSPVVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIGS-----DAAN 84 (226)
T ss_pred CCCCCCChhceeecCchH-HHHHHHHhcccCCCCeEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcch-----HHHH
Confidence 344446899988633222 23334443 2333 48999999999999999999887654 343332211 1112
Q ss_pred hcCCCcEEEEcCCCccC
Q 035959 276 ATENKSILVVGDIDCCT 292 (338)
Q Consensus 276 ~~~~~~Il~iDeiD~~~ 292 (338)
... ..+|+|||+|.+.
T Consensus 85 ~~~-~~~l~iDDi~~~~ 100 (226)
T PRK09087 85 AAA-EGPVLIEDIDAGG 100 (226)
T ss_pred hhh-cCeEEEECCCCCC
Confidence 221 2689999999863
No 165
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.46 E-value=1.6e-07 Score=97.03 Aligned_cols=63 Identities=27% Similarity=0.295 Sum_probs=51.7
Q ss_pred CCccccccCCCCCccccccCChhHHHHHHHHHHhh-----hcCceeeeCCCCCCcHHHHHHHHHHhCCcE
Q 035959 192 HDTRQSAILDHPSTFDTLAMDTDMKKMIMDDLERA-----WKRGYLLFGPPGTGKSSLIAAMANYLHFDV 256 (338)
Q Consensus 192 ~~~w~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~~-----~~~g~LL~GppGtGKT~l~~aia~~l~~~~ 256 (338)
...|. ....|.++++++++++..+.+...+... ..+.++|+||||||||++++++|+.++..+
T Consensus 71 ~~pW~--eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~ 138 (637)
T TIGR00602 71 NEPWV--EKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQV 138 (637)
T ss_pred cCchH--HHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHH
Confidence 34685 4889999999999998888888777761 223489999999999999999999998654
No 166
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.45 E-value=1.2e-06 Score=85.08 Aligned_cols=54 Identities=22% Similarity=0.354 Sum_probs=47.0
Q ss_pred CCCCCccccccCChhHHHHHHHHHHhh-hcCceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLERA-WKRGYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~~-~~~g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
..||+.|+.+++..+.++.+...+... .+..+||+||+|+|||+++.++|+.+.
T Consensus 16 ~~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Ll 70 (351)
T PRK09112 16 VPSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHIL 70 (351)
T ss_pred CCCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHc
Confidence 369999999999999999998888763 345699999999999999999999873
No 167
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.44 E-value=5.6e-07 Score=96.48 Aligned_cols=86 Identities=19% Similarity=0.350 Sum_probs=60.8
Q ss_pred ccccCChhHHHHHHHHHHhh--------hcC-ceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCCchH-----
Q 035959 207 DTLAMDTDMKKMIMDDLERA--------WKR-GYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEGNKH----- 269 (338)
Q Consensus 207 ~~l~~~~~~k~~i~~~l~~~--------~~~-g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~~~~----- 269 (338)
+.++++++..+.+...+... .+. .+||+||||||||++++++|..+ +.+++.+++++......
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~ 588 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLI 588 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhc
Confidence 34678888888787777641 112 37899999999999999999987 35788888877543221
Q ss_pred --------------HHHHHHhcCCCcEEEEcCCCccCC
Q 035959 270 --------------LRKVLIATENKSILVVGDIDCCTE 293 (338)
Q Consensus 270 --------------l~~~l~~~~~~~Il~iDeiD~~~~ 293 (338)
|...+.. .+.+||+|||||.+.+
T Consensus 589 g~~~gyvg~~~~~~l~~~~~~-~p~~VvllDeieka~~ 625 (821)
T CHL00095 589 GSPPGYVGYNEGGQLTEAVRK-KPYTVVLFDEIEKAHP 625 (821)
T ss_pred CCCCcccCcCccchHHHHHHh-CCCeEEEECChhhCCH
Confidence 2222222 3568999999998854
No 168
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.43 E-value=8.4e-07 Score=95.44 Aligned_cols=87 Identities=16% Similarity=0.393 Sum_probs=62.7
Q ss_pred ccccCChhHHHHHHHHHHhhh--------c-CceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCCchHHHHHH
Q 035959 207 DTLAMDTDMKKMIMDDLERAW--------K-RGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEGNKHLRKVL 274 (338)
Q Consensus 207 ~~l~~~~~~k~~i~~~l~~~~--------~-~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~~~~l~~~l 274 (338)
+.+++++...+.+...+.... + ..+||+||||||||++|+++|..+ +.+++.+++++........+++
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~ 644 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLI 644 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhc
Confidence 457788888888888777621 2 247899999999999999999987 4678899988765432222221
Q ss_pred ----------------H--hcCCCcEEEEcCCCccCC
Q 035959 275 ----------------I--ATENKSILVVGDIDCCTE 293 (338)
Q Consensus 275 ----------------~--~~~~~~Il~iDeiD~~~~ 293 (338)
. ...+.+||+||||+.+.+
T Consensus 645 g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~ 681 (852)
T TIGR03346 645 GAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHP 681 (852)
T ss_pred CCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCH
Confidence 1 123568999999998854
No 169
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.43 E-value=1.1e-06 Score=89.59 Aligned_cols=91 Identities=16% Similarity=0.219 Sum_probs=67.8
Q ss_pred CCCccccccCChhHHHHHHHHHHh--hhcCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCCchHHHHHHH-
Q 035959 202 HPSTFDTLAMDTDMKKMIMDDLER--AWKRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEGNKHLRKVLI- 275 (338)
Q Consensus 202 ~p~~f~~l~~~~~~k~~i~~~l~~--~~~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~~~~l~~~l~- 275 (338)
...+|+++++.....+++++.+.+ .....+||+|++||||+++|+++.... +.+++.++|+.+.. ..+...++
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~-~~~e~elFG 277 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD-DVVESELFG 277 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH-HHHHHHhcC
Confidence 345788998888777778887775 344679999999999999999987665 35899999998753 23332221
Q ss_pred -----------------hcCCCcEEEEcCCCccCC
Q 035959 276 -----------------ATENKSILVVGDIDCCTE 293 (338)
Q Consensus 276 -----------------~~~~~~Il~iDeiD~~~~ 293 (338)
+......|+|||||.+..
T Consensus 278 ~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~ 312 (520)
T PRK10820 278 HAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSP 312 (520)
T ss_pred CCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCH
Confidence 123467899999999965
No 170
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.42 E-value=7.5e-07 Score=95.71 Aligned_cols=88 Identities=15% Similarity=0.397 Sum_probs=61.9
Q ss_pred cccccCChhHHHHHHHHHHhhh------c---CceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCCchHHHHH
Q 035959 206 FDTLAMDTDMKKMIMDDLERAW------K---RGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEGNKHLRKV 273 (338)
Q Consensus 206 f~~l~~~~~~k~~i~~~l~~~~------~---~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~~~~l~~~ 273 (338)
++.+++.+...+.+...+.... . ..+||+||||||||++|+++|..+ +.+++.+++++........++
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~L 646 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRL 646 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHH
Confidence 4567888887777777776521 1 247899999999999999999987 456888888876532222222
Q ss_pred H---------------H---hcCCCcEEEEcCCCccCC
Q 035959 274 L---------------I---ATENKSILVVGDIDCCTE 293 (338)
Q Consensus 274 l---------------~---~~~~~~Il~iDeiD~~~~ 293 (338)
+ . ...+.++|+||||+.+.+
T Consensus 647 iG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~ 684 (857)
T PRK10865 647 VGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHP 684 (857)
T ss_pred hCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCH
Confidence 2 1 112458999999997754
No 171
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.42 E-value=1e-06 Score=90.12 Aligned_cols=89 Identities=16% Similarity=0.184 Sum_probs=69.3
Q ss_pred CccccccCChhHHHHHHHHHHh--hhcCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCCchHHHHHHHh--
Q 035959 204 STFDTLAMDTDMKKMIMDDLER--AWKRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEGNKHLRKVLIA-- 276 (338)
Q Consensus 204 ~~f~~l~~~~~~k~~i~~~l~~--~~~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~~~~l~~~l~~-- 276 (338)
.+|+.+++.....+++++.+.. .....+||+|++||||+++|+++.... +.+++.++|..+.. ..+...++.
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~-~~~~~~lfg~~ 271 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE-TLLESELFGHE 271 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH-HHHHHHHcCCC
Confidence 4788999988888888888887 344579999999999999999999875 56899999998743 333333311
Q ss_pred ----------------cCCCcEEEEcCCCccCC
Q 035959 277 ----------------TENKSILVVGDIDCCTE 293 (338)
Q Consensus 277 ----------------~~~~~Il~iDeiD~~~~ 293 (338)
......|+|||||.+..
T Consensus 272 ~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~ 304 (534)
T TIGR01817 272 KGAFTGAIAQRKGRFELADGGTLFLDEIGEISP 304 (534)
T ss_pred CCccCCCCcCCCCcccccCCCeEEEechhhCCH
Confidence 23467899999999865
No 172
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.41 E-value=8e-07 Score=88.04 Aligned_cols=86 Identities=20% Similarity=0.334 Sum_probs=55.6
Q ss_pred cccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHhCCc-----EEEEecCCcCC--------------
Q 035959 206 FDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYLHFD-----VYDLELSSVEG-------------- 266 (338)
Q Consensus 206 f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l~~~-----~~~l~~~~~~~-------------- 266 (338)
++++.++++..+.++..+.. +++++|+||||||||++|+++|..+... +..+....-.+
T Consensus 174 l~d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vg 251 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVG 251 (459)
T ss_pred hhcccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCC
Confidence 45566666666666666653 5789999999999999999999988531 22222221000
Q ss_pred ----chHHHHHHHhc----CCCcEEEEcCCCccCC
Q 035959 267 ----NKHLRKVLIAT----ENKSILVVGDIDCCTE 293 (338)
Q Consensus 267 ----~~~l~~~l~~~----~~~~Il~iDeiD~~~~ 293 (338)
...+.+++..+ ..+.+||||||+....
T Consensus 252 y~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani 286 (459)
T PRK11331 252 FRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANL 286 (459)
T ss_pred eEecCchHHHHHHHHHhcccCCcEEEEehhhccCH
Confidence 11222333333 3679999999998764
No 173
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.40 E-value=8.6e-07 Score=84.10 Aligned_cols=84 Identities=21% Similarity=0.322 Sum_probs=60.6
Q ss_pred cCChhHHHHHHHHHHh--hhcCceeeeCCCCCCcHHHHHHHHHHhC------------------------CcEEEEecCC
Q 035959 210 AMDTDMKKMIMDDLER--AWKRGYLLFGPPGTGKSSLIAAMANYLH------------------------FDVYDLELSS 263 (338)
Q Consensus 210 ~~~~~~k~~i~~~l~~--~~~~g~LL~GppGtGKT~l~~aia~~l~------------------------~~~~~l~~~~ 263 (338)
++..+....+...... ..+..+||+||||||||+++.++|+.+. .+++.++.++
T Consensus 4 ~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~ 83 (325)
T COG0470 4 VPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSD 83 (325)
T ss_pred ccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccc
Confidence 3444444555555553 1233599999999999999999999986 6889998888
Q ss_pred cCC----chHHHHHHHhcC------CCcEEEEcCCCccCC
Q 035959 264 VEG----NKHLRKVLIATE------NKSILVVGDIDCCTE 293 (338)
Q Consensus 264 ~~~----~~~l~~~l~~~~------~~~Il~iDeiD~~~~ 293 (338)
... .+.++.+..... ..-|++|||+|.+..
T Consensus 84 ~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~ 123 (325)
T COG0470 84 LRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE 123 (325)
T ss_pred cCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH
Confidence 765 234555544432 468999999999975
No 174
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.40 E-value=1.5e-06 Score=83.58 Aligned_cols=88 Identities=15% Similarity=0.236 Sum_probs=67.1
Q ss_pred ccccccCChhHHHHHHHHHHh--hhcCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCCchHHHHHHH----
Q 035959 205 TFDTLAMDTDMKKMIMDDLER--AWKRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEGNKHLRKVLI---- 275 (338)
Q Consensus 205 ~f~~l~~~~~~k~~i~~~l~~--~~~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~~~~l~~~l~---- 275 (338)
.++++++.....+.+++.+.+ .....+||.|++||||+++|+++.... +.+++.++|..+.. ..+...++
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~-~~~~~~lfg~~~ 82 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE-NLLDSELFGHEA 82 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCH-HHHHHHHccccc
Confidence 467788888888888888887 334579999999999999999998765 36899999998753 33333321
Q ss_pred --------------hcCCCcEEEEcCCCccCC
Q 035959 276 --------------ATENKSILVVGDIDCCTE 293 (338)
Q Consensus 276 --------------~~~~~~Il~iDeiD~~~~ 293 (338)
.......|+|||||.+..
T Consensus 83 ~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~ 114 (326)
T PRK11608 83 GAFTGAQKRHPGRFERADGGTLFLDELATAPM 114 (326)
T ss_pred cccCCcccccCCchhccCCCeEEeCChhhCCH
Confidence 223567899999999964
No 175
>PHA00729 NTP-binding motif containing protein
Probab=98.39 E-value=6.8e-07 Score=81.12 Aligned_cols=37 Identities=19% Similarity=0.334 Sum_probs=28.1
Q ss_pred HHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHhCC
Q 035959 218 MIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYLHF 254 (338)
Q Consensus 218 ~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l~~ 254 (338)
.+++.+.......++++|+|||||||+|.++|+.++.
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~~ 43 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVFW 43 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3444454433346899999999999999999998763
No 176
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=7.9e-07 Score=92.97 Aligned_cols=91 Identities=24% Similarity=0.420 Sum_probs=78.2
Q ss_pred ccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHh----------CCcEEEEecCCcCC--------
Q 035959 205 TFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYL----------HFDVYDLELSSVEG-------- 266 (338)
Q Consensus 205 ~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l----------~~~~~~l~~~~~~~-------- 266 (338)
.++.+++.++..+++++.|.+..+++-+|.|+||+|||.++..+|... +..++.+|+..+..
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeF 247 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEF 247 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcH
Confidence 567789999999999999999888899999999999999999999876 56789999988774
Q ss_pred chHHHHHHHhcC--CCcEEEEcCCCccCCcc
Q 035959 267 NKHLRKVLIATE--NKSILVVGDIDCCTELQ 295 (338)
Q Consensus 267 ~~~l~~~l~~~~--~~~Il~iDeiD~~~~~~ 295 (338)
++.|+.++.+.. .+.||||||||.+....
T Consensus 248 EeRlk~vl~ev~~~~~vILFIDEiHtiVGAG 278 (786)
T COG0542 248 EERLKAVLKEVEKSKNVILFIDEIHTIVGAG 278 (786)
T ss_pred HHHHHHHHHHHhcCCCeEEEEechhhhcCCC
Confidence 567778887774 48999999999998743
No 177
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.37 E-value=2.2e-06 Score=82.56 Aligned_cols=83 Identities=16% Similarity=0.260 Sum_probs=60.2
Q ss_pred cCChhHHHHHHHHHHh--hhcCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCCchHHHHHH----------
Q 035959 210 AMDTDMKKMIMDDLER--AWKRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEGNKHLRKVL---------- 274 (338)
Q Consensus 210 ~~~~~~k~~i~~~l~~--~~~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~~~~l~~~l---------- 274 (338)
++.....+.+++.+.+ .....+||+|++||||+++|+++.... +.+++.++|..+.. ..+...+
T Consensus 2 iG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~-~~l~~~lfG~~~g~~~g 80 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSE-NLLDSELFGHEAGAFTG 80 (329)
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCCh-HHHHHHHhccccccccC
Confidence 3444555666776766 334679999999999999999998766 36899999998653 3333333
Q ss_pred --------HhcCCCcEEEEcCCCccCC
Q 035959 275 --------IATENKSILVVGDIDCCTE 293 (338)
Q Consensus 275 --------~~~~~~~Il~iDeiD~~~~ 293 (338)
........|||||||.+..
T Consensus 81 a~~~~~G~~~~a~gGtL~Ldei~~L~~ 107 (329)
T TIGR02974 81 AQKRHQGRFERADGGTLFLDELATASL 107 (329)
T ss_pred cccccCCchhhCCCCEEEeCChHhCCH
Confidence 1223578999999999864
No 178
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.35 E-value=4.9e-07 Score=87.33 Aligned_cols=50 Identities=26% Similarity=0.410 Sum_probs=45.7
Q ss_pred CccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 204 STFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 204 ~~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
-+|..+++.++.|..++..+..+.-.|+||.||+|||||+++++++..+.
T Consensus 14 ~pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 14 FPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred CCHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 37999999999999999999888778999999999999999999988773
No 179
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.33 E-value=2.1e-06 Score=87.59 Aligned_cols=89 Identities=13% Similarity=0.125 Sum_probs=68.8
Q ss_pred CccccccCChhHHHHHHHHHHh--hhcCceeeeCCCCCCcHHHHHHHHHH-----------hCCcEEEEecCCcCCchHH
Q 035959 204 STFDTLAMDTDMKKMIMDDLER--AWKRGYLLFGPPGTGKSSLIAAMANY-----------LHFDVYDLELSSVEGNKHL 270 (338)
Q Consensus 204 ~~f~~l~~~~~~k~~i~~~l~~--~~~~g~LL~GppGtGKT~l~~aia~~-----------l~~~~~~l~~~~~~~~~~l 270 (338)
.+|+++++..+..+++.+.+.. .....+||+|++||||+.+|+++.+. .+.+++.++|..+.. ..+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e-~ll 294 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAE-SLL 294 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCCh-hhH
Confidence 4688899988888888888776 34567999999999999999999987 357899999998753 333
Q ss_pred HHHHHh-------------------cCCCcEEEEcCCCccCC
Q 035959 271 RKVLIA-------------------TENKSILVVGDIDCCTE 293 (338)
Q Consensus 271 ~~~l~~-------------------~~~~~Il~iDeiD~~~~ 293 (338)
...++. ......||||||+.+..
T Consensus 295 eseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~ 336 (538)
T PRK15424 295 EAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPL 336 (538)
T ss_pred HHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCCH
Confidence 333222 23567899999999965
No 180
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.32 E-value=3.4e-06 Score=80.52 Aligned_cols=89 Identities=19% Similarity=0.369 Sum_probs=65.8
Q ss_pred ccccccCChhHHHHHHHHHHh-hhcCceeeeCCCCCCcHHHHHHHHHHhC--------CcEEEEecC--CcCCchHHHHH
Q 035959 205 TFDTLAMDTDMKKMIMDDLER-AWKRGYLLFGPPGTGKSSLIAAMANYLH--------FDVYDLELS--SVEGNKHLRKV 273 (338)
Q Consensus 205 ~f~~l~~~~~~k~~i~~~l~~-~~~~g~LL~GppGtGKT~l~~aia~~l~--------~~~~~l~~~--~~~~~~~l~~~ 273 (338)
+|+++++.+..++.+...+.. ..++.|||+||+|+|||++|.++|+.+- .+++.+... .....++++.+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~ 81 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNI 81 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHH
Confidence 588999999999999888876 3456789999999999999999999762 144444331 11234567766
Q ss_pred HHhc------CCCcEEEEcCCCccCC
Q 035959 274 LIAT------ENKSILVVGDIDCCTE 293 (338)
Q Consensus 274 l~~~------~~~~Il~iDeiD~~~~ 293 (338)
...+ ...-|++|||+|.+..
T Consensus 82 ~~~~~~~p~~~~~kv~iI~~ad~m~~ 107 (313)
T PRK05564 82 IEEVNKKPYEGDKKVIIIYNSEKMTE 107 (313)
T ss_pred HHHHhcCcccCCceEEEEechhhcCH
Confidence 6643 2567999999998854
No 181
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.31 E-value=2.8e-06 Score=74.90 Aligned_cols=66 Identities=26% Similarity=0.405 Sum_probs=45.9
Q ss_pred cCceeeeCCCCCCcHHHHHHHHHHhCC------------------------cEEEEecCCc-CCchHHHHHHHhcC----
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMANYLHF------------------------DVYDLELSSV-EGNKHLRKVLIATE---- 278 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia~~l~~------------------------~~~~l~~~~~-~~~~~l~~~l~~~~---- 278 (338)
+..+||+||||+|||+++.++++.+.. ++..++...- ...+.++.++..+.
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 93 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTPQ 93 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCcc
Confidence 456999999999999999999998732 2344433221 12345655555442
Q ss_pred --CCcEEEEcCCCccCC
Q 035959 279 --NKSILVVGDIDCCTE 293 (338)
Q Consensus 279 --~~~Il~iDeiD~~~~ 293 (338)
.+.|+||||+|.+..
T Consensus 94 ~~~~kviiide~~~l~~ 110 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNE 110 (188)
T ss_pred cCCeEEEEEechhhhCH
Confidence 567999999999864
No 182
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.31 E-value=8e-07 Score=74.53 Aligned_cols=75 Identities=25% Similarity=0.324 Sum_probs=52.1
Q ss_pred hhHHHHHHHHHHh--hhcCceeeeCCCCCCcHHHHHHHHHHhCC---cEEEEecCCcCCchHHHHHHHhcCCCcEEEEcC
Q 035959 213 TDMKKMIMDDLER--AWKRGYLLFGPPGTGKSSLIAAMANYLHF---DVYDLELSSVEGNKHLRKVLIATENKSILVVGD 287 (338)
Q Consensus 213 ~~~k~~i~~~l~~--~~~~g~LL~GppGtGKT~l~~aia~~l~~---~~~~l~~~~~~~~~~l~~~l~~~~~~~Il~iDe 287 (338)
...-+++.+.+.. .....++|+|+|||||+++|+++....+. +++.+++.... .+++..+ ....|+|+|
T Consensus 4 S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----~~~l~~a-~~gtL~l~~ 77 (138)
T PF14532_consen 4 SPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----AELLEQA-KGGTLYLKN 77 (138)
T ss_dssp CHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----HHHHHHC-TTSEEEEEC
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----HHHHHHc-CCCEEEECC
Confidence 3445666666666 34567999999999999999999998764 34444444432 3344444 778899999
Q ss_pred CCccCC
Q 035959 288 IDCCTE 293 (338)
Q Consensus 288 iD~~~~ 293 (338)
||.+..
T Consensus 78 i~~L~~ 83 (138)
T PF14532_consen 78 IDRLSP 83 (138)
T ss_dssp GCCS-H
T ss_pred hHHCCH
Confidence 999965
No 183
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.28 E-value=1.4e-06 Score=88.48 Aligned_cols=67 Identities=30% Similarity=0.381 Sum_probs=56.0
Q ss_pred CCCccccccCCCCCccccccCChhHHHHHHHHHHhh-----hcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEE
Q 035959 191 NHDTRQSAILDHPSTFDTLAMDTDMKKMIMDDLERA-----WKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDL 259 (338)
Q Consensus 191 ~~~~w~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~~-----~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l 259 (338)
+...|. ....|.+.++|+..+...+++..+|+.. .++-+||+||||||||++++++|+++|+.+.+-
T Consensus 5 ~~~~W~--~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew 76 (519)
T PF03215_consen 5 ESEPWV--EKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEW 76 (519)
T ss_pred ccCccc--hhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEe
Confidence 456785 4889999999999998888888888872 234578999999999999999999999877653
No 184
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.27 E-value=2.6e-06 Score=82.27 Aligned_cols=60 Identities=25% Similarity=0.325 Sum_probs=50.4
Q ss_pred CCCccc-cccCChhHHHHHHHHHHhh------hcCceeeeCCCCCCcHHHHHHHHHHhCC-------cEEEEec
Q 035959 202 HPSTFD-TLAMDTDMKKMIMDDLERA------WKRGYLLFGPPGTGKSSLIAAMANYLHF-------DVYDLEL 261 (338)
Q Consensus 202 ~p~~f~-~l~~~~~~k~~i~~~l~~~------~~~g~LL~GppGtGKT~l~~aia~~l~~-------~~~~l~~ 261 (338)
+-.-|+ ++.+.++.+.++++.+... .++.++|+||||||||+++.++|+.++. ++|.+..
T Consensus 45 ~y~~F~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 45 RYRFFDHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred eccccchhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 334566 7888888999999998872 2466799999999999999999999975 8999987
No 185
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.27 E-value=2.9e-06 Score=89.42 Aligned_cols=89 Identities=18% Similarity=0.259 Sum_probs=67.7
Q ss_pred CccccccCChhHHHHHHHHHHh--hhcCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCCchHHHHHH----
Q 035959 204 STFDTLAMDTDMKKMIMDDLER--AWKRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEGNKHLRKVL---- 274 (338)
Q Consensus 204 ~~f~~l~~~~~~k~~i~~~l~~--~~~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~~~~l~~~l---- 274 (338)
..|+++++.....+.+++.+.. .....+||+|++|||||++|+++.... +.+++.++|..+.. ..+...+
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~-~~~~~~lfg~~ 451 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA-GLLESDLFGHE 451 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh-hHhhhhhcCcc
Confidence 4688899988888888888887 334579999999999999999999865 56899999988643 1111111
Q ss_pred --------------HhcCCCcEEEEcCCCccCC
Q 035959 275 --------------IATENKSILVVGDIDCCTE 293 (338)
Q Consensus 275 --------------~~~~~~~Il~iDeiD~~~~ 293 (338)
.....+..|+||||+.+..
T Consensus 452 ~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~ 484 (686)
T PRK15429 452 RGAFTGASAQRIGRFELADKSSLFLDEVGDMPL 484 (686)
T ss_pred cccccccccchhhHHHhcCCCeEEEechhhCCH
Confidence 1234568999999999864
No 186
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.27 E-value=2.4e-06 Score=89.11 Aligned_cols=48 Identities=25% Similarity=0.347 Sum_probs=41.0
Q ss_pred ccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHh
Q 035959 205 TFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 205 ~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l 252 (338)
.|..+++.+..+..+.-.+..+.-.++||.||||||||+++++++..+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~~~g~vli~G~~GtgKs~lar~l~~~l 49 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDPRIGGVLIRGEKGTAKSTAARGLAALL 49 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCCCCCeEEEEcCCCCcHHHHHHHHHHhC
Confidence 477889999888887776666655689999999999999999999987
No 187
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.27 E-value=3.2e-06 Score=88.34 Aligned_cols=88 Identities=18% Similarity=0.177 Sum_probs=67.0
Q ss_pred ccccccCChhHHHHHHHHHHh--hhcCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCCchHHH-HHHH---
Q 035959 205 TFDTLAMDTDMKKMIMDDLER--AWKRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEGNKHLR-KVLI--- 275 (338)
Q Consensus 205 ~f~~l~~~~~~k~~i~~~l~~--~~~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~~~~l~-~~l~--- 275 (338)
+|+.+++.....+++++.+.. .....+||+|++||||+++|+++.+.. +.+++.++|..+.. +.+. .+|.
T Consensus 323 ~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~-~~~~~elfg~~~ 401 (638)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD-EALAEEFLGSDR 401 (638)
T ss_pred cccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh-HHHHHHhcCCCC
Confidence 578888877777778887777 334569999999999999999999876 36899999998764 2222 2322
Q ss_pred -----------hcCCCcEEEEcCCCccCC
Q 035959 276 -----------ATENKSILVVGDIDCCTE 293 (338)
Q Consensus 276 -----------~~~~~~Il~iDeiD~~~~ 293 (338)
+......||||||+.+..
T Consensus 402 ~~~~~~~~g~~~~a~~GtL~ldei~~l~~ 430 (638)
T PRK11388 402 TDSENGRLSKFELAHGGTLFLEKVEYLSP 430 (638)
T ss_pred cCccCCCCCceeECCCCEEEEcChhhCCH
Confidence 123568899999999865
No 188
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.26 E-value=4.2e-06 Score=76.58 Aligned_cols=66 Identities=26% Similarity=0.292 Sum_probs=56.4
Q ss_pred cCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCCchHHHHHHHhcC-CCcEEEEcCCCccCC
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKVLIATE-NKSILVVGDIDCCTE 293 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~~~~l~~~l~~~~-~~~Il~iDeiD~~~~ 293 (338)
..|-.++||+|||||.+++++|+.+|..++.++|++-.+...+.+++..+. ..+.+++||++++..
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~~GaW~cfdefnrl~~ 98 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQSGAWLCFDEFNRLSE 98 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHHHT-EEEEETCCCSSH
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhhcCchhhhhhhhhhhH
Confidence 456689999999999999999999999999999999988888999998875 689999999999854
No 189
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.26 E-value=9e-07 Score=71.12 Aligned_cols=63 Identities=22% Similarity=0.340 Sum_probs=40.4
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCCchHHHHHHHhcCCCcEEEEcCCCccCC
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKVLIATENKSILVVGDIDCCTE 293 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~~~~l~~~l~~~~~~~Il~iDeiD~~~~ 293 (338)
++||||||+|||+++..+|..+...+-.-....+-....-.+.+.......++++||+.....
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~~w~gY~~q~vvi~DD~~~~~~ 63 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDKFWDGYQGQPVVIIDDFGQDND 63 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccchhhccCCCcEEEEeecCcccc
Confidence 479999999999999998887742221000011111111224555666789999999998864
No 190
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.25 E-value=2e-06 Score=86.01 Aligned_cols=81 Identities=19% Similarity=0.213 Sum_probs=50.4
Q ss_pred cCceeeeCCCCCCcHHHHHHHHHHhCC--cEE--EEecC---CcCCchHHHH-----HHHh-----cCCCcEEEEcCCCc
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMANYLHF--DVY--DLELS---SVEGNKHLRK-----VLIA-----TENKSILVVGDIDC 290 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia~~l~~--~~~--~l~~~---~~~~~~~l~~-----~l~~-----~~~~~Il~iDeiD~ 290 (338)
...+||+||||||||++|++++...+. ++. .+.++ ++.....+.. .+.. .+...+||+|||..
T Consensus 39 g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~r 118 (498)
T PRK13531 39 GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWK 118 (498)
T ss_pred CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeeccccc
Confidence 467999999999999999999998753 222 22221 1111111111 1111 12345999999986
Q ss_pred cCCcccccccccCCCCCCCCCCcchhhHHHHHHHh-cCCcC
Q 035959 291 CTELQDRSAQARTASPDWHSPKRDQITLSGLLNFT-DGLWS 330 (338)
Q Consensus 291 ~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~i-Dgl~s 330 (338)
+.+ .+.+.||..| ++...
T Consensus 119 asp----------------------~~QsaLLeam~Er~~t 137 (498)
T PRK13531 119 AGP----------------------AILNTLLTAINERRFR 137 (498)
T ss_pred CCH----------------------HHHHHHHHHHHhCeEe
Confidence 654 6778888888 45543
No 191
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.25 E-value=7.9e-07 Score=73.01 Aligned_cols=37 Identities=41% Similarity=0.626 Sum_probs=29.4
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh--------CCcEEEEecCCcC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL--------HFDVYDLELSSVE 265 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l--------~~~~~~l~~~~~~ 265 (338)
+.++++||||+|||+++..++..+ ..+++.+++....
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR 49 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC
Confidence 567899999999999999999987 6778888776655
No 192
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.25 E-value=1.8e-06 Score=77.17 Aligned_cols=46 Identities=28% Similarity=0.489 Sum_probs=36.2
Q ss_pred ccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHh
Q 035959 205 TFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 205 ~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l 252 (338)
+|+++++++..|+.+.-.... ..++|++||||||||++++++..-+
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG--~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAG--GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHC--C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred ChhhhcCcHHHHHHHHHHHcC--CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 478899999988887665543 5789999999999999999999876
No 193
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=3.8e-06 Score=81.89 Aligned_cols=85 Identities=18% Similarity=0.309 Sum_probs=60.4
Q ss_pred ccCChhHHHHHHHHHHh----hhcCceeeeCCCCCCcHHHHHHHHHHhCCc-----EEEEecCCcCCchH-HHHH-----
Q 035959 209 LAMDTDMKKMIMDDLER----AWKRGYLLFGPPGTGKSSLIAAMANYLHFD-----VYDLELSSVEGNKH-LRKV----- 273 (338)
Q Consensus 209 l~~~~~~k~~i~~~l~~----~~~~g~LL~GppGtGKT~l~~aia~~l~~~-----~~~l~~~~~~~~~~-l~~~----- 273 (338)
+...++..+++...+.. ..+..+++|||||||||..++-++.++... ++++||....+... +.++
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~ 98 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLG 98 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcC
Confidence 55556666666655555 334559999999999999999999998543 89999988765222 1222
Q ss_pred -------------------HHhcCCCcEEEEcCCCccCC
Q 035959 274 -------------------LIATENKSILVVGDIDCCTE 293 (338)
Q Consensus 274 -------------------l~~~~~~~Il~iDeiD~~~~ 293 (338)
+.......||+|||+|.+..
T Consensus 99 ~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~ 137 (366)
T COG1474 99 KVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVD 137 (366)
T ss_pred CCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhcc
Confidence 22223578999999999986
No 194
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.23 E-value=2.9e-06 Score=81.81 Aligned_cols=48 Identities=27% Similarity=0.443 Sum_probs=42.8
Q ss_pred ccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHh
Q 035959 205 TFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 205 ~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l 252 (338)
.|..+++.++.|+.++-.+..+...+++|.|+||||||+++++++..+
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred CccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 478889999999988887777777889999999999999999999877
No 195
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.20 E-value=3.7e-06 Score=82.46 Aligned_cols=94 Identities=18% Similarity=0.248 Sum_probs=58.3
Q ss_pred cCCCCCccccccCChhHH--HHHHHHHHh-h--hcCceeeeCCCCCCcHHHHHHHHHHhC-----CcEEEEecCCcCC--
Q 035959 199 ILDHPSTFDTLAMDTDMK--KMIMDDLER-A--WKRGYLLFGPPGTGKSSLIAAMANYLH-----FDVYDLELSSVEG-- 266 (338)
Q Consensus 199 ~~~~p~~f~~l~~~~~~k--~~i~~~l~~-~--~~~g~LL~GppGtGKT~l~~aia~~l~-----~~~~~l~~~~~~~-- 266 (338)
.+....+|++++..+... ..+...+.. + ....++||||.|.|||||++|++++.. ..++++.......
T Consensus 79 ~l~~~ytFdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~ 158 (408)
T COG0593 79 GLNPKYTFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDF 158 (408)
T ss_pred cCCCCCchhheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHH
Confidence 345556999987765432 222222222 2 235689999999999999999999883 2355554433211
Q ss_pred -----chHHHHHHHhcCCCcEEEEcCCCccCC
Q 035959 267 -----NKHLRKVLIATENKSILVVGDIDCCTE 293 (338)
Q Consensus 267 -----~~~l~~~l~~~~~~~Il~iDeiD~~~~ 293 (338)
+..+.+.=... +-.+|+||||+.+..
T Consensus 159 v~a~~~~~~~~Fk~~y-~~dlllIDDiq~l~g 189 (408)
T COG0593 159 VKALRDNEMEKFKEKY-SLDLLLIDDIQFLAG 189 (408)
T ss_pred HHHHHhhhHHHHHHhh-ccCeeeechHhHhcC
Confidence 11122222223 678999999999976
No 196
>PF13173 AAA_14: AAA domain
Probab=98.20 E-value=2.5e-06 Score=70.63 Aligned_cols=65 Identities=18% Similarity=0.391 Sum_probs=49.8
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhC--CcEEEEecCCcCCch----HHHHHHHhc--CCCcEEEEcCCCccCC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLH--FDVYDLELSSVEGNK----HLRKVLIAT--ENKSILVVGDIDCCTE 293 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~--~~~~~l~~~~~~~~~----~l~~~l~~~--~~~~Il~iDeiD~~~~ 293 (338)
+.++|+||+|+|||+++..++..+. ..+..+++.+..... ++.+.+.+. ..+.+||||||+.+..
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~~~ 75 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYLPD 75 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhhcc
Confidence 4578999999999999999998886 788899888765321 133444443 3679999999999864
No 197
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.20 E-value=5.1e-06 Score=84.64 Aligned_cols=91 Identities=15% Similarity=0.201 Sum_probs=69.9
Q ss_pred CCCccccccCChhHHHHHHHHHHh--hhcCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCCchHHHHHHHh
Q 035959 202 HPSTFDTLAMDTDMKKMIMDDLER--AWKRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEGNKHLRKVLIA 276 (338)
Q Consensus 202 ~p~~f~~l~~~~~~k~~i~~~l~~--~~~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~~~~l~~~l~~ 276 (338)
...+|+++++..+..+.+.+.+.. .....+||.|++||||+++|+++.+.. +.+++.++|..+.. ..+...++.
T Consensus 207 ~~~~f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e-~lleseLFG 285 (526)
T TIGR02329 207 TRYRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAE-SLLEAELFG 285 (526)
T ss_pred cccchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCCh-hHHHHHhcC
Confidence 345788999988888888888876 345679999999999999999999765 56899999998753 333333322
Q ss_pred -------------------cCCCcEEEEcCCCccCC
Q 035959 277 -------------------TENKSILVVGDIDCCTE 293 (338)
Q Consensus 277 -------------------~~~~~Il~iDeiD~~~~ 293 (338)
......||||||+.+..
T Consensus 286 ~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~ 321 (526)
T TIGR02329 286 YEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPL 321 (526)
T ss_pred CcccccccccccccccchhhcCCceEEecChHhCCH
Confidence 23467899999999965
No 198
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.17 E-value=7.2e-06 Score=86.45 Aligned_cols=86 Identities=26% Similarity=0.369 Sum_probs=55.1
Q ss_pred cccCChhHHHHHHHHHHh----hhcCc-eeeeCCCCCCcHHHHHHHHHHh----------CCcEEEEecCCcCCc-----
Q 035959 208 TLAMDTDMKKMIMDDLER----AWKRG-YLLFGPPGTGKSSLIAAMANYL----------HFDVYDLELSSVEGN----- 267 (338)
Q Consensus 208 ~l~~~~~~k~~i~~~l~~----~~~~g-~LL~GppGtGKT~l~~aia~~l----------~~~~~~l~~~~~~~~----- 267 (338)
.|.+.++..++|...|.. ..+.+ ++++|+||||||.+++.+...+ ...++.|+|..+...
T Consensus 756 ~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYq 835 (1164)
T PTZ00112 756 YLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQ 835 (1164)
T ss_pred cCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHH
Confidence 344555444555444443 12223 4699999999999999998776 256789998654432
Q ss_pred ------------------hHHHHHHHhcC----CCcEEEEcCCCccCC
Q 035959 268 ------------------KHLRKVLIATE----NKSILVVGDIDCCTE 293 (338)
Q Consensus 268 ------------------~~l~~~l~~~~----~~~Il~iDeiD~~~~ 293 (338)
..+..++.... ...||||||||.+..
T Consensus 836 vI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~k 883 (1164)
T PTZ00112 836 VLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLIT 883 (1164)
T ss_pred HHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCc
Confidence 12233333321 356999999999975
No 199
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.16 E-value=8.9e-06 Score=82.83 Aligned_cols=88 Identities=14% Similarity=0.139 Sum_probs=67.7
Q ss_pred ccccccCChhHHHHHHHHHHh--hhcCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCCchHHHHHHH----
Q 035959 205 TFDTLAMDTDMKKMIMDDLER--AWKRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEGNKHLRKVLI---- 275 (338)
Q Consensus 205 ~f~~l~~~~~~k~~i~~~l~~--~~~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~~~~l~~~l~---- 275 (338)
.+..+++.....+.+.+.+.. +....+||+|++||||+++++++.... +.+++.++|..+.. ..+...++
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~-~~~e~~lfG~~~ 263 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPE-SLAESELFGHVK 263 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCCh-HHHHHHhcCccc
Confidence 467788888888888888887 445679999999999999999999875 46899999998753 22222221
Q ss_pred --------------hcCCCcEEEEcCCCccCC
Q 035959 276 --------------ATENKSILVVGDIDCCTE 293 (338)
Q Consensus 276 --------------~~~~~~Il~iDeiD~~~~ 293 (338)
.......|||||||.+..
T Consensus 264 g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~ 295 (509)
T PRK05022 264 GAFTGAISNRSGKFELADGGTLFLDEIGELPL 295 (509)
T ss_pred cccCCCcccCCcchhhcCCCEEEecChhhCCH
Confidence 123567899999999965
No 200
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.13 E-value=2.6e-05 Score=67.36 Aligned_cols=82 Identities=18% Similarity=0.323 Sum_probs=57.1
Q ss_pred ChhHHHHHHHHHHh-hhcCceeeeCCCCCCcHHHHHHHHHHhC-----------------------CcEEEEecCCc---
Q 035959 212 DTDMKKMIMDDLER-AWKRGYLLFGPPGTGKSSLIAAMANYLH-----------------------FDVYDLELSSV--- 264 (338)
Q Consensus 212 ~~~~k~~i~~~l~~-~~~~g~LL~GppGtGKT~l~~aia~~l~-----------------------~~~~~l~~~~~--- 264 (338)
++...+.+.+.+.. ..+..+||+||+|+||+++|.++|+.+- .+++.++....
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~ 81 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKS 81 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSS
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccch
Confidence 34455555555554 3345689999999999999999998761 35667766654
Q ss_pred CCchHHHHHHHhcC------CCcEEEEcCCCccCC
Q 035959 265 EGNKHLRKVLIATE------NKSILVVGDIDCCTE 293 (338)
Q Consensus 265 ~~~~~l~~~l~~~~------~~~Il~iDeiD~~~~ 293 (338)
...++++.+..... ..-|++|||+|.+..
T Consensus 82 i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~ 116 (162)
T PF13177_consen 82 IKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTE 116 (162)
T ss_dssp BSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-H
T ss_pred hhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhH
Confidence 24567777777663 567999999999964
No 201
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.11 E-value=8.2e-06 Score=79.86 Aligned_cols=90 Identities=13% Similarity=0.167 Sum_probs=71.1
Q ss_pred CccccccCChhHHHHHHHHHHh--hhcCceeeeCCCCCCcHHHHHHHHHHh----CCcEEEEecCCcCCchHHHHHHHhc
Q 035959 204 STFDTLAMDTDMKKMIMDDLER--AWKRGYLLFGPPGTGKSSLIAAMANYL----HFDVYDLELSSVEGNKHLRKVLIAT 277 (338)
Q Consensus 204 ~~f~~l~~~~~~k~~i~~~l~~--~~~~g~LL~GppGtGKT~l~~aia~~l----~~~~~~l~~~~~~~~~~l~~~l~~~ 277 (338)
..++.+++....-+++++.+.+ +....+|++|++||||+.+|++|.... +.+++.+||+.+..+-....+|-..
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG~~ 154 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFGHE 154 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhccc
Confidence 4678899988888888888888 334568999999999999999988543 5689999999988765554443211
Q ss_pred -----------------CCCcEEEEcCCCccCC
Q 035959 278 -----------------ENKSILVVGDIDCCTE 293 (338)
Q Consensus 278 -----------------~~~~Il~iDeiD~~~~ 293 (338)
.....||+|||+.+..
T Consensus 155 kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~ 187 (403)
T COG1221 155 KGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPP 187 (403)
T ss_pred cceeecccCCcCchheecCCCEEehhhhhhCCH
Confidence 3578999999999976
No 202
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=5.6e-06 Score=85.47 Aligned_cols=64 Identities=22% Similarity=0.491 Sum_probs=55.8
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC------chHHHHHHHhcC--CCcEEEEcCCCccCC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG------NKHLRKVLIATE--NKSILVVGDIDCCTE 293 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~------~~~l~~~l~~~~--~~~Il~iDeiD~~~~ 293 (338)
.+||+|+||||||++++++|.++|.+++.++|.++.+ +..+...+..+. .|+|||+-++|.+.-
T Consensus 433 ~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~i 504 (953)
T KOG0736|consen 433 SVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGI 504 (953)
T ss_pred EEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeee
Confidence 3799999999999999999999999999999998874 455666676664 799999999999974
No 203
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.09 E-value=1.2e-05 Score=77.29 Aligned_cols=89 Identities=22% Similarity=0.302 Sum_probs=61.2
Q ss_pred ccccccC-ChhHHHHHHHHHHh-hhcCceeeeCCCCCCcHHHHHHHHHHhC------------------------CcEEE
Q 035959 205 TFDTLAM-DTDMKKMIMDDLER-AWKRGYLLFGPPGTGKSSLIAAMANYLH------------------------FDVYD 258 (338)
Q Consensus 205 ~f~~l~~-~~~~k~~i~~~l~~-~~~~g~LL~GppGtGKT~l~~aia~~l~------------------------~~~~~ 258 (338)
.|+++.+ .+.+.+.+...+.. ..+..|||+||+|+||++++.++|+.+- .++..
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~ 82 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHL 82 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEE
Confidence 4667777 67777777777765 3456789999999999999999998862 13444
Q ss_pred EecCCc-CCchHHHHHHHhcC------CCcEEEEcCCCccCC
Q 035959 259 LELSSV-EGNKHLRKVLIATE------NKSILVVGDIDCCTE 293 (338)
Q Consensus 259 l~~~~~-~~~~~l~~~l~~~~------~~~Il~iDeiD~~~~ 293 (338)
+....- ...++++.+..... ...|++|||+|.+..
T Consensus 83 i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~ 124 (329)
T PRK08058 83 VAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTA 124 (329)
T ss_pred eccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCH
Confidence 433211 12345666655432 567999999999854
No 204
>PHA02624 large T antigen; Provisional
Probab=98.01 E-value=2.5e-05 Score=79.77 Aligned_cols=88 Identities=19% Similarity=0.257 Sum_probs=57.1
Q ss_pred hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCCchHHHHHHHhcCCCcEEEEcCCCccCCcccccccccCCC
Q 035959 226 AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKVLIATENKSILVVGDIDCCTELQDRSAQARTAS 305 (338)
Q Consensus 226 ~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~~~~l~~~l~~~~~~~Il~iDeiD~~~~~~~r~~~~~~~~ 305 (338)
|.++.++|+||||||||+++.++++.++..+..++...- .+.--|.-+...-+++|||+-.-.-. +..
T Consensus 429 PKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~----ks~FwL~pl~D~~~~l~dD~t~~~~~-~~~------- 496 (647)
T PHA02624 429 PKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPD----KLNFELGCAIDQFMVVFEDVKGQPAD-NKD------- 496 (647)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcc----hhHHHhhhhhhceEEEeeeccccccc-ccc-------
Confidence 667789999999999999999999999666666664332 22223333346689999999754431 010
Q ss_pred CCCCCCCcchhhHHHHHHHhcCC
Q 035959 306 PDWHSPKRDQITLSGLLNFTDGL 328 (338)
Q Consensus 306 ~~~~~~~~~~~~ls~lLn~iDgl 328 (338)
-..+..-..|..|=|.+||-
T Consensus 497 ---Lp~G~~~dNl~~lRn~LDG~ 516 (647)
T PHA02624 497 ---LPSGQGMNNLDNLRDYLDGS 516 (647)
T ss_pred ---CCcccccchhhHHHhhcCCC
Confidence 00112223356677888886
No 205
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=8.6e-06 Score=81.07 Aligned_cols=65 Identities=31% Similarity=0.439 Sum_probs=51.9
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcEEEEec-CCcC--C----chHHHHHHHhcC--CCcEEEEcCCCccCC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYDLEL-SSVE--G----NKHLRKVLIATE--NKSILVVGDIDCCTE 293 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~-~~~~--~----~~~l~~~l~~~~--~~~Il~iDeiD~~~~ 293 (338)
..+||+||||+|||.||+.+|..-++|++.+-- .++. + ...+.+.|.++- .-+||++|||+.+++
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD 612 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLD 612 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhc
Confidence 357999999999999999999999999887633 2332 1 235778888874 679999999999875
No 206
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=97.97 E-value=3.3e-06 Score=79.40 Aligned_cols=99 Identities=19% Similarity=0.218 Sum_probs=68.5
Q ss_pred CccccccCCCCCccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHhCC----c--EEEEecCCcCC
Q 035959 193 DTRQSAILDHPSTFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYLHF----D--VYDLELSSVEG 266 (338)
Q Consensus 193 ~~w~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l~~----~--~~~l~~~~~~~ 266 (338)
-.|. +.+.|..+++++...+....+.+......-...|+|||||||||+.+.|.|..+-. . +..+++++-..
T Consensus 29 ~pwv--ekyrP~~l~dv~~~~ei~st~~~~~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rg 106 (360)
T KOG0990|consen 29 QPWV--EKYRPPFLGIVIKQEPIWSTENRYSGMPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRG 106 (360)
T ss_pred CCCc--cCCCCchhhhHhcCCchhhHHHHhccCCCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccC
Confidence 3564 57889999999998887777776655544458999999999999999999987732 1 33445554332
Q ss_pred c---hHHHHHHHhc---------CCCcEEEEcCCCccCC
Q 035959 267 N---KHLRKVLIAT---------ENKSILVVGDIDCCTE 293 (338)
Q Consensus 267 ~---~~l~~~l~~~---------~~~~Il~iDeiD~~~~ 293 (338)
- ..-.+.+..+ ....++++||.|.+..
T Consensus 107 id~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~ 145 (360)
T KOG0990|consen 107 IDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTR 145 (360)
T ss_pred CcchHHHHHHHHhhccceeccccCceeEEEecchhHhhH
Confidence 1 1122333333 2567999999999863
No 207
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.95 E-value=4.3e-05 Score=73.09 Aligned_cols=48 Identities=19% Similarity=0.322 Sum_probs=42.6
Q ss_pred ccccccCChhHHHHHHHHHHhh-hcCceeeeCCCCCCcHHHHHHHHHHh
Q 035959 205 TFDTLAMDTDMKKMIMDDLERA-WKRGYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 205 ~f~~l~~~~~~k~~i~~~l~~~-~~~g~LL~GppGtGKT~l~~aia~~l 252 (338)
.|+++++.+..++.+...+... -+..|||+||+|+||++++.++|+.+
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~l 50 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGL 50 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999999988773 35789999999999999999999986
No 208
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.93 E-value=1.6e-05 Score=74.47 Aligned_cols=67 Identities=31% Similarity=0.486 Sum_probs=43.8
Q ss_pred hcCceeeeCCCCCCcHHHHHHHHHHhCCc---EEEEecCCcCCchHHHHHHHhc-------------CCCcEEEEcCCCc
Q 035959 227 WKRGYLLFGPPGTGKSSLIAAMANYLHFD---VYDLELSSVEGNKHLRKVLIAT-------------ENKSILVVGDIDC 290 (338)
Q Consensus 227 ~~~g~LL~GppGtGKT~l~~aia~~l~~~---~~~l~~~~~~~~~~l~~~l~~~-------------~~~~Il~iDeiD~ 290 (338)
.++.+||.||+|||||.+++..-..+... +..++++...+...+.++++.. .++.|++|||++.
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~ 111 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNM 111 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-
T ss_pred cCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCC
Confidence 46789999999999999998877666432 3456665544444444443322 2567999999998
Q ss_pred cCC
Q 035959 291 CTE 293 (338)
Q Consensus 291 ~~~ 293 (338)
-..
T Consensus 112 p~~ 114 (272)
T PF12775_consen 112 PQP 114 (272)
T ss_dssp S--
T ss_pred CCC
Confidence 765
No 209
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.90 E-value=9.2e-05 Score=72.26 Aligned_cols=63 Identities=25% Similarity=0.343 Sum_probs=45.6
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh----C-CcEEEEecCCc----------------------CCchHHHHHHHhcCCCc
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL----H-FDVYDLELSSV----------------------EGNKHLRKVLIATENKS 281 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l----~-~~~~~l~~~~~----------------------~~~~~l~~~l~~~~~~~ 281 (338)
..++|.||+|+|||+++..+|..+ | ..+..+..... .+..++...+.+.....
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~D 217 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKH 217 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCC
Confidence 357899999999999999999864 3 34555544432 12345666677777889
Q ss_pred EEEEcCCCcc
Q 035959 282 ILVVGDIDCC 291 (338)
Q Consensus 282 Il~iDeiD~~ 291 (338)
+|+||.....
T Consensus 218 lVLIDTaG~~ 227 (374)
T PRK14722 218 MVLIDTIGMS 227 (374)
T ss_pred EEEEcCCCCC
Confidence 9999998655
No 210
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=1.7e-05 Score=80.37 Aligned_cols=90 Identities=31% Similarity=0.501 Sum_probs=67.5
Q ss_pred cCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC------chHHHHHHHhcC--CCcEEEEcCCCccCCcccccc
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG------NKHLRKVLIATE--NKSILVVGDIDCCTELQDRSA 299 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~------~~~l~~~l~~~~--~~~Il~iDeiD~~~~~~~r~~ 299 (338)
+++++++||||||||.+++++|+. +.....++...+.. ...++.++.... .++++++||+|.+.+ .|..
T Consensus 18 ~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~d~~~~~~~--~~~~ 94 (494)
T COG0464 18 PKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFIDEIDALAP--KRSS 94 (494)
T ss_pred CCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEeechhhhccc--Cccc
Confidence 489999999999999999999998 44334444444332 345666666654 569999999999988 5544
Q ss_pred cccCCCCCCCCCCcchhhHHHHHHHhcCCc
Q 035959 300 QARTASPDWHSPKRDQITLSGLLNFTDGLW 329 (338)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~ 329 (338)
.. .......++.|+..+||+-
T Consensus 95 ~~---------~~~~~~v~~~l~~~~d~~~ 115 (494)
T COG0464 95 DQ---------GEVERRVVAQLLALMDGLK 115 (494)
T ss_pred cc---------cchhhHHHHHHHHhccccc
Confidence 11 2456788999999999997
No 211
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=97.89 E-value=2.8e-05 Score=74.98 Aligned_cols=72 Identities=26% Similarity=0.380 Sum_probs=49.0
Q ss_pred cccccCChhHHHH--HHHHHHhh---hcCceeeeCCCCCCcHHHHHHHHHHhC--CcEEEEecCCcCCc-----hHHHHH
Q 035959 206 FDTLAMDTDMKKM--IMDDLERA---WKRGYLLFGPPGTGKSSLIAAMANYLH--FDVYDLELSSVEGN-----KHLRKV 273 (338)
Q Consensus 206 f~~l~~~~~~k~~--i~~~l~~~---~~~g~LL~GppGtGKT~l~~aia~~l~--~~~~~l~~~~~~~~-----~~l~~~ 273 (338)
.+.++++.+.+++ ++-++... ..+++||.||||||||.|+.+||.++| .|+..++.+++.+. +.|.+.
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~kKTE~L~qa 102 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVKKTEALTQA 102 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-HHHHHHHH
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccCchHHHHHH
Confidence 3568888777654 23333332 358899999999999999999999997 68899999888742 336666
Q ss_pred HHhc
Q 035959 274 LIAT 277 (338)
Q Consensus 274 l~~~ 277 (338)
|.+.
T Consensus 103 ~Rra 106 (398)
T PF06068_consen 103 FRRA 106 (398)
T ss_dssp HHCS
T ss_pred HHHh
Confidence 6654
No 212
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.87 E-value=1.1e-05 Score=65.54 Aligned_cols=31 Identities=39% Similarity=0.712 Sum_probs=28.3
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhCCcEEEEec
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLHFDVYDLEL 261 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~~~~~~l~~ 261 (338)
+++.||||+|||++++.+|+.+|+.++.++-
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 6899999999999999999999998877765
No 213
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.86 E-value=4.7e-05 Score=73.30 Aligned_cols=66 Identities=23% Similarity=0.402 Sum_probs=48.6
Q ss_pred cCceeeeCCCCCCcHHHHHHHHHHhCC------------------------cEEEEecCC---cCCchHHHHHHHhcC--
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMANYLHF------------------------DVYDLELSS---VEGNKHLRKVLIATE-- 278 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia~~l~~------------------------~~~~l~~~~---~~~~~~l~~~l~~~~-- 278 (338)
+..+||+||+|+||+++|.++|+.+.. +++.+.... ....++++.+...+.
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~ 101 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQT 101 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhhc
Confidence 467999999999999999999998731 556664432 223456776665542
Q ss_pred ----CCcEEEEcCCCccCC
Q 035959 279 ----NKSILVVGDIDCCTE 293 (338)
Q Consensus 279 ----~~~Il~iDeiD~~~~ 293 (338)
...|++||++|.+..
T Consensus 102 ~~~~~~kv~iI~~a~~m~~ 120 (328)
T PRK05707 102 AQLGGRKVVLIEPAEAMNR 120 (328)
T ss_pred cccCCCeEEEECChhhCCH
Confidence 567899999999964
No 214
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.83 E-value=7.6e-05 Score=69.08 Aligned_cols=43 Identities=28% Similarity=0.326 Sum_probs=31.0
Q ss_pred CChhHHHHHHHHHHhh--hcC-ceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 211 MDTDMKKMIMDDLERA--WKR-GYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 211 ~~~~~k~~i~~~l~~~--~~~-g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
......++++..+... .+. -++|+||+|+|||++++.+++.+.
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 3344445566666542 223 478999999999999999999876
No 215
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=97.83 E-value=7.5e-05 Score=74.99 Aligned_cols=87 Identities=14% Similarity=0.171 Sum_probs=62.1
Q ss_pred cccccCChhHHHHHHHHHHh--hhcCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCCchHHHHHHHh----
Q 035959 206 FDTLAMDTDMKKMIMDDLER--AWKRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEGNKHLRKVLIA---- 276 (338)
Q Consensus 206 f~~l~~~~~~k~~i~~~l~~--~~~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~~~~l~~~l~~---- 276 (338)
+..+++.....+.+...+.. +....+++.|++||||+++++++.... +.+++.++|..+.. ..+...+..
T Consensus 137 ~~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~-~~~~~~lfg~~~g 215 (469)
T PRK10923 137 TTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPK-DLIESELFGHEKG 215 (469)
T ss_pred cccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCH-HHHHHHhcCCCCC
Confidence 44566666556666666654 334568999999999999999999876 46899999998743 333333322
Q ss_pred --------------cCCCcEEEEcCCCccCC
Q 035959 277 --------------TENKSILVVGDIDCCTE 293 (338)
Q Consensus 277 --------------~~~~~Il~iDeiD~~~~ 293 (338)
...+..|||||||.+..
T Consensus 216 ~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~ 246 (469)
T PRK10923 216 AFTGANTIRQGRFEQADGGTLFLDEIGDMPL 246 (469)
T ss_pred CCCCCCcCCCCCeeECCCCEEEEeccccCCH
Confidence 22467899999999865
No 216
>PHA02774 E1; Provisional
Probab=97.82 E-value=4.6e-05 Score=77.52 Aligned_cols=63 Identities=25% Similarity=0.353 Sum_probs=44.0
Q ss_pred HHHHHHh-hhcCceeeeCCCCCCcHHHHHHHHHHhCCcE-EEEecCCcCCchHHHHHHHhcCCCcEEEEcCC
Q 035959 219 IMDDLER-AWKRGYLLFGPPGTGKSSLIAAMANYLHFDV-YDLELSSVEGNKHLRKVLIATENKSILVVGDI 288 (338)
Q Consensus 219 i~~~l~~-~~~~g~LL~GppGtGKT~l~~aia~~l~~~~-~~l~~~~~~~~~~l~~~l~~~~~~~Il~iDei 288 (338)
+...+.. |.+++++|+||||||||+++.+|++.++..+ ..++..+ . --+..+....|++|||+
T Consensus 424 lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s---~----FwLqpl~d~ki~vlDD~ 488 (613)
T PHA02774 424 LKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKS---H----FWLQPLADAKIALLDDA 488 (613)
T ss_pred HHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcc---c----cccchhccCCEEEEecC
Confidence 3333433 4457889999999999999999999997554 3455421 1 11344456689999999
No 217
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.81 E-value=3.4e-05 Score=68.98 Aligned_cols=43 Identities=30% Similarity=0.433 Sum_probs=31.9
Q ss_pred CChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 211 MDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 211 ~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
+.....+.+.+.+.....+.++|+||+|+|||+|++.+.+.+.
T Consensus 3 gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~ 45 (234)
T PF01637_consen 3 GREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELK 45 (234)
T ss_dssp S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhh
Confidence 4445556666666554457789999999999999999999883
No 218
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.76 E-value=6.3e-05 Score=63.22 Aligned_cols=63 Identities=19% Similarity=0.341 Sum_probs=42.8
Q ss_pred eeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCC-----------------------------chHHH---HHHH
Q 035959 231 YLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEG-----------------------------NKHLR---KVLI 275 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~-----------------------------~~~l~---~~l~ 275 (338)
++++||||+|||+++.+++..+ +.++..++...... ...+. ..+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 5799999999999999999887 45566665542211 01111 1223
Q ss_pred hcCCCcEEEEcCCCccCC
Q 035959 276 ATENKSILVVGDIDCCTE 293 (338)
Q Consensus 276 ~~~~~~Il~iDeiD~~~~ 293 (338)
....+.+++|||+..+.+
T Consensus 82 ~~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 82 ERGGDDLIILDELTRLVR 99 (165)
T ss_pred hCCCCEEEEEEcHHHHHH
Confidence 334788999999998865
No 219
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.75 E-value=5.1e-05 Score=72.53 Aligned_cols=71 Identities=27% Similarity=0.424 Sum_probs=50.0
Q ss_pred ccccCChhHHHH---HHHHHHh--hhcCceeeeCCCCCCcHHHHHHHHHHhC--CcEEEEecCCcCC-----chHHHHHH
Q 035959 207 DTLAMDTDMKKM---IMDDLER--AWKRGYLLFGPPGTGKSSLIAAMANYLH--FDVYDLELSSVEG-----NKHLRKVL 274 (338)
Q Consensus 207 ~~l~~~~~~k~~---i~~~l~~--~~~~g~LL~GppGtGKT~l~~aia~~l~--~~~~~l~~~~~~~-----~~~l~~~l 274 (338)
+-++++.+.++. +++.+++ -..+|+|+.||||||||.||-++|.++| .||..++.+++-+ .+-|.+.|
T Consensus 39 dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kKTE~L~qa~ 118 (450)
T COG1224 39 DGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKTEALTQAL 118 (450)
T ss_pred CcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecccHHHHHHHHH
Confidence 456777665542 3344443 3458899999999999999999999997 5677888887764 23355555
Q ss_pred Hhc
Q 035959 275 IAT 277 (338)
Q Consensus 275 ~~~ 277 (338)
.+.
T Consensus 119 Rra 121 (450)
T COG1224 119 RRA 121 (450)
T ss_pred HHh
Confidence 544
No 220
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.73 E-value=5.3e-05 Score=77.09 Aligned_cols=61 Identities=23% Similarity=0.349 Sum_probs=49.3
Q ss_pred CCCCccccccCChhHHHHHHHHHHh------hhcCceeeeCCCCCCcHHHHHHHHHHh-CCcEEEEec
Q 035959 201 DHPSTFDTLAMDTDMKKMIMDDLER------AWKRGYLLFGPPGTGKSSLIAAMANYL-HFDVYDLEL 261 (338)
Q Consensus 201 ~~p~~f~~l~~~~~~k~~i~~~l~~------~~~~g~LL~GppGtGKT~l~~aia~~l-~~~~~~l~~ 261 (338)
.+-.-|+++.+.++.+++|++.+.. ..++-++|.||||+|||+|++++|+.+ .+++|.+..
T Consensus 70 ~ry~fF~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 70 KRYPAFEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred ccccchhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 3344688888999999999999955 234457899999999999999999988 467887755
No 221
>PRK08118 topology modulation protein; Reviewed
Probab=97.71 E-value=6.2e-05 Score=65.39 Aligned_cols=32 Identities=31% Similarity=0.523 Sum_probs=29.1
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCCcEEEEec
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHFDVYDLEL 261 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~ 261 (338)
.+++.||||+|||++++.+++.++.+++.+|.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 47899999999999999999999999887763
No 222
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=97.71 E-value=0.00013 Score=73.20 Aligned_cols=92 Identities=20% Similarity=0.256 Sum_probs=70.4
Q ss_pred CCCCCccccccCChhHHHHHHHHHHh--hhcCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCCchHHHHHH
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLER--AWKRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEGNKHLRKVL 274 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~--~~~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~~~~l~~~l 274 (338)
+.++.+|+++++..+.-.++++.+.+ +....+|+.|++||||..+|++|.+.- +.+++.+||+.+-. .-|...|
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe-~LlESEL 316 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE-TLLESEL 316 (560)
T ss_pred cccccchhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCH-HHHHHHH
Confidence 44566899999988877777777776 445679999999999999999999876 57999999998752 2222222
Q ss_pred Hhc-------------------CCCcEEEEcCCCccC
Q 035959 275 IAT-------------------ENKSILVVGDIDCCT 292 (338)
Q Consensus 275 ~~~-------------------~~~~Il~iDeiD~~~ 292 (338)
+.. +...-||||||..+.
T Consensus 317 FGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgemp 353 (560)
T COG3829 317 FGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMP 353 (560)
T ss_pred hCcCCccccccccCCCCcceeeccCCeEEehhhccCC
Confidence 222 356789999999885
No 223
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.70 E-value=0.00019 Score=67.73 Aligned_cols=65 Identities=14% Similarity=0.259 Sum_probs=45.5
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhC---------CcEEEEecCCcCCchHHH-HHHHhc---------------------
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLH---------FDVYDLELSSVEGNKHLR-KVLIAT--------------------- 277 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~---------~~~~~l~~~~~~~~~~l~-~~l~~~--------------------- 277 (338)
.++||+|++|.|||++++..+.... .+++.+....--++..+- .++..+
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~ll 141 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLL 141 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999987552 467777765544332221 111111
Q ss_pred --CCCcEEEEcCCCccCC
Q 035959 278 --ENKSILVVGDIDCCTE 293 (338)
Q Consensus 278 --~~~~Il~iDeiD~~~~ 293 (338)
-..-+|+|||+|.++.
T Consensus 142 r~~~vrmLIIDE~H~lLa 159 (302)
T PF05621_consen 142 RRLGVRMLIIDEFHNLLA 159 (302)
T ss_pred HHcCCcEEEeechHHHhc
Confidence 2567999999999876
No 224
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.69 E-value=0.0003 Score=62.66 Aligned_cols=75 Identities=24% Similarity=0.357 Sum_probs=44.1
Q ss_pred HHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCC----------chHHHHHHHhc--------
Q 035959 219 IMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEG----------NKHLRKVLIAT-------- 277 (338)
Q Consensus 219 i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~----------~~~l~~~l~~~-------- 277 (338)
.+..+.....+.+++.||||||||+++.+++..+ +..++.+..+.-.. ...+..++...
T Consensus 9 a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~ 88 (196)
T PF13604_consen 9 AVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGR 88 (196)
T ss_dssp HHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSS
T ss_pred HHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCccccccc
Confidence 3333433334567899999999999999988766 56666665543211 01122222211
Q ss_pred ---CCCcEEEEcCCCccCC
Q 035959 278 ---ENKSILVVGDIDCCTE 293 (338)
Q Consensus 278 ---~~~~Il~iDeiD~~~~ 293 (338)
.+..+|||||+..+..
T Consensus 89 ~~~~~~~vliVDEasmv~~ 107 (196)
T PF13604_consen 89 PELPKKDVLIVDEASMVDS 107 (196)
T ss_dssp CC-TSTSEEEESSGGG-BH
T ss_pred ccCCcccEEEEecccccCH
Confidence 2358999999988753
No 225
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.68 E-value=3.7e-05 Score=66.10 Aligned_cols=33 Identities=30% Similarity=0.447 Sum_probs=29.8
Q ss_pred cCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEe
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLE 260 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~ 260 (338)
+..++|+||||||||++++++|..++.++++.+
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 467899999999999999999999999888764
No 226
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.68 E-value=4.8e-05 Score=76.17 Aligned_cols=68 Identities=22% Similarity=0.319 Sum_probs=55.8
Q ss_pred CCCccccccCCCCCccccccCChhHHHHHHHHHHh-------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEe
Q 035959 191 NHDTRQSAILDHPSTFDTLAMDTDMKKMIMDDLER-------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLE 260 (338)
Q Consensus 191 ~~~~w~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~-------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~ 260 (338)
++..|. ....|++.++|+..+....++..+|+. ...+-+||+||+|||||+.++.||.++|+.+..-.
T Consensus 68 ~~elW~--eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 68 EFELWV--EKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred ccchhH--HhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 456785 478899999999988888888888883 22345799999999999999999999998876543
No 227
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=97.66 E-value=0.00018 Score=71.93 Aligned_cols=85 Identities=16% Similarity=0.190 Sum_probs=59.3
Q ss_pred cccCChhHHHHHHHHHHh--hhcCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCCchHHHHHHHh------
Q 035959 208 TLAMDTDMKKMIMDDLER--AWKRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEGNKHLRKVLIA------ 276 (338)
Q Consensus 208 ~l~~~~~~k~~i~~~l~~--~~~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~~~~l~~~l~~------ 276 (338)
.+++.....+.+.+.+.. .....++++|++||||+++++++.... +.+++.++|..+.. ..+...+..
T Consensus 144 ~ii~~S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~-~~~~~~lfg~~~~~~ 222 (457)
T PRK11361 144 HILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPE-SLLESELFGHEKGAF 222 (457)
T ss_pred ceecccHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCH-HHHHHHhcCCCCCCC
Confidence 345544444555555554 334568999999999999999998765 46899999998753 333333322
Q ss_pred ------------cCCCcEEEEcCCCccCC
Q 035959 277 ------------TENKSILVVGDIDCCTE 293 (338)
Q Consensus 277 ------------~~~~~Il~iDeiD~~~~ 293 (338)
.....+|+|||||.+..
T Consensus 223 ~~~~~~~~g~~~~a~~gtl~ld~i~~l~~ 251 (457)
T PRK11361 223 TGAQTLRQGLFERANEGTLLLDEIGEMPL 251 (457)
T ss_pred CCCCCCCCCceEECCCCEEEEechhhCCH
Confidence 12467999999999965
No 228
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=97.65 E-value=0.00024 Score=70.77 Aligned_cols=86 Identities=19% Similarity=0.214 Sum_probs=60.3
Q ss_pred ccccCChhHHHHHHHHHHh--hhcCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCCchHHHHHHHh-----
Q 035959 207 DTLAMDTDMKKMIMDDLER--AWKRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEGNKHLRKVLIA----- 276 (338)
Q Consensus 207 ~~l~~~~~~k~~i~~~l~~--~~~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~~~~l~~~l~~----- 276 (338)
..+++.....+.+...+.. .....++++|++||||+++++++.... +.+++.++|..+.. ..+...++.
T Consensus 139 ~~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~-~~~~~~lfg~~~~~ 217 (445)
T TIGR02915 139 RGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPE-NLLESELFGYEKGA 217 (445)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCCh-HHHHHHhcCCCCCC
Confidence 3445554455556665554 334678999999999999999998776 35899999998743 334433322
Q ss_pred -------------cCCCcEEEEcCCCccCC
Q 035959 277 -------------TENKSILVVGDIDCCTE 293 (338)
Q Consensus 277 -------------~~~~~Il~iDeiD~~~~ 293 (338)
......|+||||+.+..
T Consensus 218 ~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~ 247 (445)
T TIGR02915 218 FTGAVKQTLGKIEYAHGGTLFLDEIGDLPL 247 (445)
T ss_pred cCCCccCCCCceeECCCCEEEEechhhCCH
Confidence 13567899999999965
No 229
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=97.64 E-value=9.9e-05 Score=76.43 Aligned_cols=78 Identities=22% Similarity=0.226 Sum_probs=49.0
Q ss_pred HHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHhCC--cEEEEecCCcC----CchHHHHHHHh-----------cC
Q 035959 216 KKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYLHF--DVYDLELSSVE----GNKHLRKVLIA-----------TE 278 (338)
Q Consensus 216 k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l~~--~~~~l~~~~~~----~~~~l~~~l~~-----------~~ 278 (338)
|..+.-....|.-.++||.|+||||||+++++++..++. ++..+.+.... ..-++...+.. ..
T Consensus 4 ~~Al~l~av~p~~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A 83 (589)
T TIGR02031 4 KLALTLLAVDPSLGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEA 83 (589)
T ss_pred HHHHHHhccCCCcceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeC
Confidence 333333333344468999999999999999999998864 46666642111 11112211111 12
Q ss_pred CCcEEEEcCCCccCC
Q 035959 279 NKSILVVGDIDCCTE 293 (338)
Q Consensus 279 ~~~Il~iDeiD~~~~ 293 (338)
...+|+||||+.+.+
T Consensus 84 ~~GvL~lDEi~rl~~ 98 (589)
T TIGR02031 84 PRGVLYVDMANLLDD 98 (589)
T ss_pred CCCcEeccchhhCCH
Confidence 457999999999965
No 230
>PF05729 NACHT: NACHT domain
Probab=97.62 E-value=0.00012 Score=61.85 Aligned_cols=65 Identities=25% Similarity=0.448 Sum_probs=42.4
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCC---------cEEEEecCCcCCch---HHHHHH------------------HhcC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHF---------DVYDLELSSVEGNK---HLRKVL------------------IATE 278 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~---------~~~~l~~~~~~~~~---~l~~~l------------------~~~~ 278 (338)
|-++++|+||+|||++++.++..+.. -++.+.+.+..... .+...+ ....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 34789999999999999999987721 12344444333211 222222 2224
Q ss_pred CCcEEEEcCCCccCC
Q 035959 279 NKSILVVGDIDCCTE 293 (338)
Q Consensus 279 ~~~Il~iDeiD~~~~ 293 (338)
.+.+|+||.+|.+..
T Consensus 81 ~~~llilDglDE~~~ 95 (166)
T PF05729_consen 81 KRVLLILDGLDELEE 95 (166)
T ss_pred CceEEEEechHhccc
Confidence 678999999999976
No 231
>smart00350 MCM minichromosome maintenance proteins.
Probab=97.61 E-value=7.5e-05 Score=76.06 Aligned_cols=84 Identities=23% Similarity=0.282 Sum_probs=51.0
Q ss_pred ccCChhHHHHHHHHHHhhh---------cC---ceeeeCCCCCCcHHHHHHHHHHhCCcEEEE----ecCCcCCchHHHH
Q 035959 209 LAMDTDMKKMIMDDLERAW---------KR---GYLLFGPPGTGKSSLIAAMANYLHFDVYDL----ELSSVEGNKHLRK 272 (338)
Q Consensus 209 l~~~~~~k~~i~~~l~~~~---------~~---g~LL~GppGtGKT~l~~aia~~l~~~~~~l----~~~~~~~~~~l~~ 272 (338)
+.+.+..|..++-.+.... -+ .+||+|+||||||.+++++++......+.. ++..+.. ..++.
T Consensus 205 i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~-~~~~~ 283 (509)
T smart00350 205 IYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTA-AVTRD 283 (509)
T ss_pred ccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccc-cceEc
Confidence 4556666766666654411 01 599999999999999999999876443322 1111111 00000
Q ss_pred ----------HHHhcCCCcEEEEcCCCccCC
Q 035959 273 ----------VLIATENKSILVVGDIDCCTE 293 (338)
Q Consensus 273 ----------~l~~~~~~~Il~iDeiD~~~~ 293 (338)
-....+...+++|||+|.+.+
T Consensus 284 ~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~ 314 (509)
T smart00350 284 PETREFTLEGGALVLADNGVCCIDEFDKMDD 314 (509)
T ss_pred cCcceEEecCccEEecCCCEEEEechhhCCH
Confidence 001123578999999999864
No 232
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.60 E-value=7.5e-05 Score=72.74 Aligned_cols=65 Identities=18% Similarity=0.319 Sum_probs=41.9
Q ss_pred hcCceeeeCCCCCCcHHHHHHHHHHhCC-cEEEEecCCcC------------CchHHHHHHHhcCCC-cEEEEcCCCcc
Q 035959 227 WKRGYLLFGPPGTGKSSLIAAMANYLHF-DVYDLELSSVE------------GNKHLRKVLIATENK-SILVVGDIDCC 291 (338)
Q Consensus 227 ~~~g~LL~GppGtGKT~l~~aia~~l~~-~~~~l~~~~~~------------~~~~l~~~l~~~~~~-~Il~iDeiD~~ 291 (338)
.++|++||||+|+|||+|..+..+.+.. .-..+...... ....+..+.....+. .+|++||++.-
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~~~lLcfDEF~V~ 139 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAKESRLLCFDEFQVT 139 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHhcCCEEEEeeeecc
Confidence 3689999999999999999999988753 11111111110 122344445555444 49999999865
No 233
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.00028 Score=75.18 Aligned_cols=85 Identities=20% Similarity=0.340 Sum_probs=57.8
Q ss_pred ccCChhHHHHHHHHHHh-------h-hcCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCC-----------
Q 035959 209 LAMDTDMKKMIMDDLER-------A-WKRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEG----------- 266 (338)
Q Consensus 209 l~~~~~~k~~i~~~l~~-------~-~~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~----------- 266 (338)
++++++....|-+.+.. + ..--+||.||.|+|||-|++|+|.++ .-.++.+|+++...
T Consensus 564 V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gy 643 (898)
T KOG1051|consen 564 VIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGY 643 (898)
T ss_pred ccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCccc
Confidence 45555555555555544 1 12237899999999999999999988 34688999986221
Q ss_pred --chHHHHHHHhc--CCCcEEEEcCCCccCC
Q 035959 267 --NKHLRKVLIAT--ENKSILVVGDIDCCTE 293 (338)
Q Consensus 267 --~~~l~~~l~~~--~~~~Il~iDeiD~~~~ 293 (338)
....-++-..+ .+.+||+|||||..-+
T Consensus 644 vG~e~gg~LteavrrrP~sVVLfdeIEkAh~ 674 (898)
T KOG1051|consen 644 VGKEEGGQLTEAVKRRPYSVVLFEEIEKAHP 674 (898)
T ss_pred ccchhHHHHHHHHhcCCceEEEEechhhcCH
Confidence 22233333333 3679999999998865
No 234
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.60 E-value=6.2e-05 Score=74.10 Aligned_cols=65 Identities=14% Similarity=0.218 Sum_probs=42.4
Q ss_pred cCceeeeCCCCCCcHHHHHHHHHH-hCCcEEEEecCCcCCchHHHHHHHhcCCCcEEEEcCCCccCC
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMANY-LHFDVYDLELSSVEGNKHLRKVLIATENKSILVVGDIDCCTE 293 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia~~-l~~~~~~l~~~~~~~~~~l~~~l~~~~~~~Il~iDeiD~~~~ 293 (338)
+.++++.|||||||||++.+++.+ .-..-.....+.+..+-. .+.+......++|+|||+..+.-
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~~a~~sG~f~T~a~Lf~~L~-~~~lg~v~~~DlLI~DEvgylp~ 274 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPYVILISGGTITVAKLFYNIS-TRQIGLVGRWDVVAFDEVATLKF 274 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHHHHHHcCCcCcHHHHHHHHH-HHHHhhhccCCEEEEEcCCCCcC
Confidence 467999999999999999998887 211111222222221111 14445556889999999999654
No 235
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.59 E-value=4.2e-05 Score=69.38 Aligned_cols=63 Identities=24% Similarity=0.390 Sum_probs=38.5
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCC-------------c---CCchHHHHHHHhc----CCCcEEEEcCC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSS-------------V---EGNKHLRKVLIAT----ENKSILVVGDI 288 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~-------------~---~~~~~l~~~l~~~----~~~~Il~iDei 288 (338)
.-+|+||+||+|||++++.++... -++..+.+. + ..-..+...+..+ .....||||.|
T Consensus 13 ~~~liyG~~G~GKtt~a~~~~~~~--~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDsI 90 (220)
T TIGR01618 13 NMYLIYGKPGTGKTSTIKYLPGKT--LVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDNI 90 (220)
T ss_pred cEEEEECCCCCCHHHHHHhcCCCC--EEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEecH
Confidence 458999999999999999987421 112222211 0 0112333333322 35789999999
Q ss_pred CccCC
Q 035959 289 DCCTE 293 (338)
Q Consensus 289 D~~~~ 293 (338)
+.+..
T Consensus 91 ~~l~~ 95 (220)
T TIGR01618 91 SALQN 95 (220)
T ss_pred HHHHH
Confidence 99753
No 236
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.58 E-value=0.00044 Score=65.19 Aligned_cols=59 Identities=25% Similarity=0.375 Sum_probs=43.9
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh----C-CcEEEEecCCcC----------------------CchHHHHHHHhcCCCcE
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL----H-FDVYDLELSSVE----------------------GNKHLRKVLIATENKSI 282 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l----~-~~~~~l~~~~~~----------------------~~~~l~~~l~~~~~~~I 282 (338)
-++|.||+|+|||+++..+|.++ + ..+..+++.... +..++.+.+..+...++
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~~~d~ 275 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLRDKDL 275 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHccCCCE
Confidence 46799999999999999999876 3 677777665521 23456677777777889
Q ss_pred EEEcCC
Q 035959 283 LVVGDI 288 (338)
Q Consensus 283 l~iDei 288 (338)
||||..
T Consensus 276 vliDt~ 281 (282)
T TIGR03499 276 ILIDTA 281 (282)
T ss_pred EEEeCC
Confidence 998864
No 237
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.56 E-value=0.00027 Score=68.01 Aligned_cols=66 Identities=17% Similarity=0.246 Sum_probs=48.4
Q ss_pred cCceeeeCCCCCCcHHHHHHHHHHhC-------------------------CcEEEEecCC----------cCCchHHHH
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMANYLH-------------------------FDVYDLELSS----------VEGNKHLRK 272 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia~~l~-------------------------~~~~~l~~~~----------~~~~~~l~~ 272 (338)
+..+||+||+|+|||+++.++|+.+. .+++.++... ....++++.
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR~ 100 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVRE 100 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHHH
Confidence 46799999999999999999998862 3566676532 123455666
Q ss_pred HHHhcC------CCcEEEEcCCCccCC
Q 035959 273 VLIATE------NKSILVVGDIDCCTE 293 (338)
Q Consensus 273 ~l~~~~------~~~Il~iDeiD~~~~ 293 (338)
+...+. ...|++||++|.+..
T Consensus 101 l~~~~~~~p~~~~~kV~iiEp~~~Ld~ 127 (325)
T PRK08699 101 IIDNVYLTSVRGGLRVILIHPAESMNL 127 (325)
T ss_pred HHHHHhhCcccCCceEEEEechhhCCH
Confidence 665542 567999999999964
No 238
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.53 E-value=0.00022 Score=66.46 Aligned_cols=79 Identities=24% Similarity=0.240 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHh--hhcCceeeeCCCCCCcHHHHHHHHHH--hC--Cc-EEEEecCCcCCchH-----------------
Q 035959 214 DMKKMIMDDLER--AWKRGYLLFGPPGTGKSSLIAAMANY--LH--FD-VYDLELSSVEGNKH----------------- 269 (338)
Q Consensus 214 ~~k~~i~~~l~~--~~~~g~LL~GppGtGKT~l~~aia~~--l~--~~-~~~l~~~~~~~~~~----------------- 269 (338)
...++|.+.|.. ...+-+.|+|++|+|||+||..+++. .. ++ ++.+++....+...
T Consensus 3 ~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 82 (287)
T PF00931_consen 3 KEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSIS 82 (287)
T ss_dssp HHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSS
T ss_pred HHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccc
Confidence 345677777776 33455789999999999999999977 32 32 44555544332111
Q ss_pred -------HHHHHHh-c-CCCcEEEEcCCCccC
Q 035959 270 -------LRKVLIA-T-ENKSILVVGDIDCCT 292 (338)
Q Consensus 270 -------l~~~l~~-~-~~~~Il~iDeiD~~~ 292 (338)
+.+.+.+ + .++++|||||++...
T Consensus 83 ~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~ 114 (287)
T PF00931_consen 83 DPKDIEELQDQLRELLKDKRCLLVLDDVWDEE 114 (287)
T ss_dssp CCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH
T ss_pred cccccccccccchhhhccccceeeeeeecccc
Confidence 1111111 1 358999999998765
No 239
>PRK13947 shikimate kinase; Provisional
Probab=97.51 E-value=9.3e-05 Score=63.82 Aligned_cols=32 Identities=31% Similarity=0.438 Sum_probs=29.3
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCCcEEEEec
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHFDVYDLEL 261 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~ 261 (338)
.++|.|+||||||++++.+|+.+++++++.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~ 34 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDK 34 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECch
Confidence 48899999999999999999999999987764
No 240
>PRK03839 putative kinase; Provisional
Probab=97.51 E-value=8.4e-05 Score=64.89 Aligned_cols=30 Identities=30% Similarity=0.574 Sum_probs=27.4
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhCCcEEEEe
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLHFDVYDLE 260 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~~~~~~l~ 260 (338)
++|.|+||+|||++++.+|+.++++++.++
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 789999999999999999999999887654
No 241
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.49 E-value=0.00011 Score=62.05 Aligned_cols=31 Identities=29% Similarity=0.451 Sum_probs=28.2
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCCcEEEEe
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHFDVYDLE 260 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~~~~~l~ 260 (338)
.++|+|+||+|||++++++|..++++++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 3789999999999999999999999988765
No 242
>PRK15115 response regulator GlrR; Provisional
Probab=97.48 E-value=0.00045 Score=68.86 Aligned_cols=84 Identities=15% Similarity=0.207 Sum_probs=57.5
Q ss_pred ccCChhHHHHHHHHHHh--hhcCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCCchHHHHHHHh-------
Q 035959 209 LAMDTDMKKMIMDDLER--AWKRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEGNKHLRKVLIA------- 276 (338)
Q Consensus 209 l~~~~~~k~~i~~~l~~--~~~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~~~~l~~~l~~------- 276 (338)
+++.....+.+++.+.. .....++++|++||||+++++++.... +.+++.++|..+.. ..+...+..
T Consensus 136 lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~-~~~~~~lfg~~~~~~~ 214 (444)
T PRK15115 136 IVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPE-QLLESELFGHARGAFT 214 (444)
T ss_pred ccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCH-HHHHHHhcCCCcCCCC
Confidence 34444444445554443 334568999999999999999998875 46899999998743 333333221
Q ss_pred -----------cCCCcEEEEcCCCccCC
Q 035959 277 -----------TENKSILVVGDIDCCTE 293 (338)
Q Consensus 277 -----------~~~~~Il~iDeiD~~~~ 293 (338)
......|||||||.+..
T Consensus 215 ~~~~~~~g~~~~a~~gtl~l~~i~~l~~ 242 (444)
T PRK15115 215 GAVSNREGLFQAAEGGTLFLDEIGDMPA 242 (444)
T ss_pred CCccCCCCcEEECCCCEEEEEccccCCH
Confidence 23467899999999865
No 243
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.48 E-value=0.00065 Score=63.66 Aligned_cols=77 Identities=18% Similarity=0.330 Sum_probs=58.9
Q ss_pred HHHHHHHHh---hhcCceeeeCCCCCCcHHHHHHHHH------HhCCcEEEEecCCcCCchHHHHHHHhc----------
Q 035959 217 KMIMDDLER---AWKRGYLLFGPPGTGKSSLIAAMAN------YLHFDVYDLELSSVEGNKHLRKVLIAT---------- 277 (338)
Q Consensus 217 ~~i~~~l~~---~~~~g~LL~GppGtGKT~l~~aia~------~l~~~~~~l~~~~~~~~~~l~~~l~~~---------- 277 (338)
.+.++++++ ..+..+||.||.|.|||.|++-+.. .+.-+++.++|..+..+..+..+|...
T Consensus 194 nrmieqierva~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~ 273 (531)
T COG4650 194 NRMIEQIERVAIRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARES 273 (531)
T ss_pred HHHHHHHHHHHhhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhh
Confidence 344555554 3446799999999999999998764 345689999999999877777766544
Q ss_pred -------CCCcEEEEcCCCccCC
Q 035959 278 -------ENKSILVVGDIDCCTE 293 (338)
Q Consensus 278 -------~~~~Il~iDeiD~~~~ 293 (338)
....+||+|||..+..
T Consensus 274 r~gllrsadggmlfldeigelga 296 (531)
T COG4650 274 REGLLRSADGGMLFLDEIGELGA 296 (531)
T ss_pred hhhhhccCCCceEehHhhhhcCc
Confidence 3578999999998864
No 244
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.47 E-value=0.00071 Score=64.99 Aligned_cols=80 Identities=20% Similarity=0.236 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHh-hhcCceeeeCCCCCCcHHHHHHHHHHhC------------------------CcEEEEecC--CcCC
Q 035959 214 DMKKMIMDDLER-AWKRGYLLFGPPGTGKSSLIAAMANYLH------------------------FDVYDLELS--SVEG 266 (338)
Q Consensus 214 ~~k~~i~~~l~~-~~~~g~LL~GppGtGKT~l~~aia~~l~------------------------~~~~~l~~~--~~~~ 266 (338)
..++.+...+.+ .-+.++||+||+|+||+.++.++|+.+- .+++.+... .-..
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~ 88 (325)
T PRK06871 9 PTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIG 88 (325)
T ss_pred HHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCC
Confidence 345566666655 3356899999999999999999998772 235555432 1123
Q ss_pred chHHHHHHHhcC------CCcEEEEcCCCccCC
Q 035959 267 NKHLRKVLIATE------NKSILVVGDIDCCTE 293 (338)
Q Consensus 267 ~~~l~~~l~~~~------~~~Il~iDeiD~~~~ 293 (338)
.++++.+...+. ..-|++||++|.+..
T Consensus 89 id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~ 121 (325)
T PRK06871 89 VDQVREINEKVSQHAQQGGNKVVYIQGAERLTE 121 (325)
T ss_pred HHHHHHHHHHHhhccccCCceEEEEechhhhCH
Confidence 456666655542 567999999999964
No 245
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.47 E-value=0.00062 Score=65.74 Aligned_cols=80 Identities=20% Similarity=0.262 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHh-hhcCceeeeCCCCCCcHHHHHHHHHHhC------------------------CcEEEEecCC---cC
Q 035959 214 DMKKMIMDDLER-AWKRGYLLFGPPGTGKSSLIAAMANYLH------------------------FDVYDLELSS---VE 265 (338)
Q Consensus 214 ~~k~~i~~~l~~-~~~~g~LL~GppGtGKT~l~~aia~~l~------------------------~~~~~l~~~~---~~ 265 (338)
...++++..+.. .-+..+||+||+|+||+.+|.++|..+- -+++.+.... ..
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I 88 (334)
T PRK07993 9 PDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSL 88 (334)
T ss_pred HHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccC
Confidence 345566666655 3456899999999999999999998871 2455554332 23
Q ss_pred CchHHHHHHHhcC------CCcEEEEcCCCccCC
Q 035959 266 GNKHLRKVLIATE------NKSILVVGDIDCCTE 293 (338)
Q Consensus 266 ~~~~l~~~l~~~~------~~~Il~iDeiD~~~~ 293 (338)
..++++.+...+. ..-|++||++|.+..
T Consensus 89 ~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~ 122 (334)
T PRK07993 89 GVDAVREVTEKLYEHARLGGAKVVWLPDAALLTD 122 (334)
T ss_pred CHHHHHHHHHHHhhccccCCceEEEEcchHhhCH
Confidence 4556666665542 567999999999964
No 246
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.45 E-value=6.2e-05 Score=62.70 Aligned_cols=27 Identities=44% Similarity=0.682 Sum_probs=23.6
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhCCcEE
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLHFDVY 257 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~~~~~ 257 (338)
+++.||||+||||+++.++..++..++
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~i 28 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVVI 28 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEE
Confidence 589999999999999999999984443
No 247
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.45 E-value=0.00013 Score=65.26 Aligned_cols=24 Identities=46% Similarity=0.855 Sum_probs=19.4
Q ss_pred Cc-eeeeCCCCCCcHHHHHHHHHHh
Q 035959 229 RG-YLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 229 ~g-~LL~GppGtGKT~l~~aia~~l 252 (338)
.+ .+++||||||||+++.+++..+
T Consensus 17 ~~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 17 NGITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp SE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCChHHHHHHHHHHh
Confidence 44 7899999999999888877776
No 248
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.43 E-value=0.00011 Score=63.70 Aligned_cols=56 Identities=25% Similarity=0.328 Sum_probs=34.6
Q ss_pred ccCChhHHHHHHHHHHh---hhcCceeeeCCCCCCcHHHHHHHHHHhCCc---EEEEecCCc
Q 035959 209 LAMDTDMKKMIMDDLER---AWKRGYLLFGPPGTGKSSLIAAMANYLHFD---VYDLELSSV 264 (338)
Q Consensus 209 l~~~~~~k~~i~~~l~~---~~~~g~LL~GppGtGKT~l~~aia~~l~~~---~~~l~~~~~ 264 (338)
+++.++..+++...+.. ..++.++++||+|+|||++++++...+... ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 35566666666666632 234678999999999999999988877433 666666555
No 249
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.43 E-value=0.00022 Score=58.86 Aligned_cols=45 Identities=18% Similarity=0.210 Sum_probs=33.7
Q ss_pred cccCChhHHHHHHHHHHh-----hhcCce--eeeCCCCCCcHHHHHHHHHHh
Q 035959 208 TLAMDTDMKKMIMDDLER-----AWKRGY--LLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 208 ~l~~~~~~k~~i~~~l~~-----~~~~g~--LL~GppGtGKT~l~~aia~~l 252 (338)
.+.+++-..+.+++.+.. .+++.+ .|+||||||||++++.||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 467777667777766666 122333 499999999999999999986
No 250
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.43 E-value=0.00077 Score=65.21 Aligned_cols=37 Identities=22% Similarity=0.218 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHh
Q 035959 215 MKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 215 ~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l 252 (338)
.++++... ...-+.++||+||+|+||++++.++|+.+
T Consensus 9 ~~~~l~~~-~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~L 45 (342)
T PRK06964 9 DWNRLQAL-RARLPHALLLHGQAGIGKLDFAQHLAQGL 45 (342)
T ss_pred HHHHHHHh-cCCcceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34444442 22345789999999999999999999877
No 251
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.43 E-value=0.00036 Score=64.98 Aligned_cols=89 Identities=19% Similarity=0.377 Sum_probs=57.4
Q ss_pred CCccccccCChhHHHHHHHHHHhh--hcCceeeeCCCCCCcHHHHHHHHHHhCC---cEEEEecC-CcC-----------
Q 035959 203 PSTFDTLAMDTDMKKMIMDDLERA--WKRGYLLFGPPGTGKSSLIAAMANYLHF---DVYDLELS-SVE----------- 265 (338)
Q Consensus 203 p~~f~~l~~~~~~k~~i~~~l~~~--~~~g~LL~GppGtGKT~l~~aia~~l~~---~~~~l~~~-~~~----------- 265 (338)
+-+++++...+...+.+.+.+... .+..+++.||+|+|||+++.++..++.. .++.++-. ++.
T Consensus 100 ~~sle~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~~ 179 (270)
T PF00437_consen 100 PFSLEDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQT 179 (270)
T ss_dssp --CHCCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEEE
T ss_pred cccHhhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEEEEe
Confidence 337788877776666666666653 3567899999999999999999998843 34444321 111
Q ss_pred --CchHHHHHHHhc--CCCcEEEEcCCCcc
Q 035959 266 --GNKHLRKVLIAT--ENKSILVVGDIDCC 291 (338)
Q Consensus 266 --~~~~l~~~l~~~--~~~~Il~iDeiD~~ 291 (338)
....+.+++..+ ..|++|++.||...
T Consensus 180 ~~~~~~~~~~l~~~LR~~pD~iiigEiR~~ 209 (270)
T PF00437_consen 180 RRDEISYEDLLKSALRQDPDVIIIGEIRDP 209 (270)
T ss_dssp ETTTBSHHHHHHHHTTS--SEEEESCE-SC
T ss_pred ecCcccHHHHHHHHhcCCCCcccccccCCH
Confidence 122455666554 37899999999764
No 252
>PRK00625 shikimate kinase; Provisional
Probab=97.42 E-value=0.00013 Score=63.87 Aligned_cols=32 Identities=31% Similarity=0.530 Sum_probs=29.3
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCCcEEEEec
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHFDVYDLEL 261 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~ 261 (338)
.++|.|+||+|||++++.+|+.++++++++|-
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~ 33 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDD 33 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhH
Confidence 47899999999999999999999999988863
No 253
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=97.42 E-value=0.00021 Score=72.53 Aligned_cols=47 Identities=28% Similarity=0.453 Sum_probs=36.1
Q ss_pred CccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHh
Q 035959 204 STFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 204 ~~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l 252 (338)
.+|+++.+....++.+.-.+ .....++|.||||||||+++++++..+
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa--~~g~~vlliG~pGsGKTtlar~l~~ll 235 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA--AGGHNLLLFGPPGSGKTMLASRLQGIL 235 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc--cCCCEEEEEecCCCCHHHHHHHHhccc
Confidence 47888888887766554433 223569999999999999999999754
No 254
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.42 E-value=0.00031 Score=77.91 Aligned_cols=65 Identities=26% Similarity=0.363 Sum_probs=50.6
Q ss_pred cCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCCch-------------HH----HHHHHhcCCCcEEEEcCCCc
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGNK-------------HL----RKVLIATENKSILVVGDIDC 290 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~~~-------------~l----~~~l~~~~~~~Il~iDeiD~ 290 (338)
.+++||-|.||+|||+|+.|+|+..|...+.+++++-.+-- +. ..++..+.+..-+++||+..
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDEiNL 1622 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDEINL 1622 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeehhhh
Confidence 57899999999999999999999999999999998743210 00 12344455788999999986
Q ss_pred cC
Q 035959 291 CT 292 (338)
Q Consensus 291 ~~ 292 (338)
..
T Consensus 1623 aS 1624 (4600)
T COG5271 1623 AS 1624 (4600)
T ss_pred hH
Confidence 53
No 255
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=97.42 E-value=0.00066 Score=67.99 Aligned_cols=85 Identities=15% Similarity=0.192 Sum_probs=60.0
Q ss_pred cccCChhHHHHHHHHHHh--hhcCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCCchHHHHHHHh------
Q 035959 208 TLAMDTDMKKMIMDDLER--AWKRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEGNKHLRKVLIA------ 276 (338)
Q Consensus 208 ~l~~~~~~k~~i~~~l~~--~~~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~~~~l~~~l~~------ 276 (338)
.+++..+..+++...+.. .....+++.|++||||+++++++.... +.+++.++|..+.. +.+...+..
T Consensus 135 ~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~-~~~~~~lfg~~~~~~ 213 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPK-DLIESELFGHEKGAF 213 (463)
T ss_pred ceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCH-HHHHHHhcCCCCCCC
Confidence 355555555666666654 334568999999999999999998875 46899999998743 333333321
Q ss_pred ------------cCCCcEEEEcCCCccCC
Q 035959 277 ------------TENKSILVVGDIDCCTE 293 (338)
Q Consensus 277 ------------~~~~~Il~iDeiD~~~~ 293 (338)
...+..|+|||||.+..
T Consensus 214 ~~~~~~~~g~~~~a~~gtl~l~ei~~l~~ 242 (463)
T TIGR01818 214 TGANTRRQGRFEQADGGTLFLDEIGDMPL 242 (463)
T ss_pred CCcccCCCCcEEECCCCeEEEEchhhCCH
Confidence 12467899999999865
No 256
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.42 E-value=0.00031 Score=61.22 Aligned_cols=64 Identities=17% Similarity=0.177 Sum_probs=47.0
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCCch-----------------------HHHHHHHh-cCCCcEEEE
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGNK-----------------------HLRKVLIA-TENKSILVV 285 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~~~-----------------------~l~~~l~~-~~~~~Il~i 285 (338)
-+++.|+||+|||+++..++..++.+++++.......++ +|..++.. ..+..+++|
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~~~~VlI 82 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAPGRCVLV 82 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCCCCEEEe
Confidence 378999999999999999999988777777665543321 34444544 345678999
Q ss_pred cCCCccCC
Q 035959 286 GDIDCCTE 293 (338)
Q Consensus 286 DeiD~~~~ 293 (338)
|-+..+..
T Consensus 83 D~Lt~~~~ 90 (170)
T PRK05800 83 DCLTTWVT 90 (170)
T ss_pred hhHHHHHH
Confidence 98888754
No 257
>PRK07261 topology modulation protein; Provisional
Probab=97.38 E-value=0.00027 Score=61.51 Aligned_cols=31 Identities=26% Similarity=0.441 Sum_probs=27.4
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhCCcEEEEec
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLHFDVYDLEL 261 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~~~~~~l~~ 261 (338)
+++.|+||+|||+|++.++..++.+++.+|.
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~ 33 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDT 33 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCC
Confidence 6899999999999999999999888776653
No 258
>PRK13949 shikimate kinase; Provisional
Probab=97.37 E-value=0.00015 Score=63.04 Aligned_cols=33 Identities=33% Similarity=0.477 Sum_probs=29.7
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcEEEEec
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYDLEL 261 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~ 261 (338)
+.++|.||||+|||++++.+|+.+++++++.|.
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~ 34 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDF 34 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeecccH
Confidence 358999999999999999999999999888763
No 259
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.33 E-value=0.0002 Score=60.69 Aligned_cols=32 Identities=31% Similarity=0.566 Sum_probs=28.6
Q ss_pred cCceeeeCCCCCCcHHHHHHHHHHhCCcEEEE
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMANYLHFDVYDL 259 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l 259 (338)
+.++|+.|-||||||+++..+|..+++..+.+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~i 38 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEI 38 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEeh
Confidence 35799999999999999999999999887655
No 260
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.33 E-value=0.0004 Score=59.66 Aligned_cols=23 Identities=35% Similarity=0.677 Sum_probs=21.2
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l 252 (338)
-+.++|+||+|||+++.-+++.+
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHH
Confidence 47899999999999999999887
No 261
>PRK04132 replication factor C small subunit; Provisional
Probab=97.33 E-value=0.0004 Score=74.19 Aligned_cols=62 Identities=19% Similarity=0.278 Sum_probs=51.0
Q ss_pred eeeC--CCCCCcHHHHHHHHHHh-----CCcEEEEecCCcCCchHHHHHHHhcC--------CCcEEEEcCCCccCC
Q 035959 232 LLFG--PPGTGKSSLIAAMANYL-----HFDVYDLELSSVEGNKHLRKVLIATE--------NKSILVVGDIDCCTE 293 (338)
Q Consensus 232 LL~G--ppGtGKT~l~~aia~~l-----~~~~~~l~~~~~~~~~~l~~~l~~~~--------~~~Il~iDeiD~~~~ 293 (338)
+..| |++.||||+|.|+|+++ +.+++.+++++....+.+++.+.... +..|+||||+|.+..
T Consensus 568 ~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~ 644 (846)
T PRK04132 568 FIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQ 644 (846)
T ss_pred hhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCH
Confidence 5668 99999999999999998 56899999999777677777765431 236999999999964
No 262
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.32 E-value=0.0014 Score=62.87 Aligned_cols=80 Identities=16% Similarity=0.153 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHh-hhcCceeeeCCCCCCcHHHHHHHHHHhC-----------------------CcEEEEecCC---cCC
Q 035959 214 DMKKMIMDDLER-AWKRGYLLFGPPGTGKSSLIAAMANYLH-----------------------FDVYDLELSS---VEG 266 (338)
Q Consensus 214 ~~k~~i~~~l~~-~~~~g~LL~GppGtGKT~l~~aia~~l~-----------------------~~~~~l~~~~---~~~ 266 (338)
+.++.+...+.. .-+..+||+||.|+||+.++.++|..+- .+++.+.... ...
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~ 89 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSIT 89 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCC
Confidence 445566665554 3346799999999999999999998761 2566665432 223
Q ss_pred chHHHHHHHhc------CCCcEEEEcCCCccCC
Q 035959 267 NKHLRKVLIAT------ENKSILVVGDIDCCTE 293 (338)
Q Consensus 267 ~~~l~~~l~~~------~~~~Il~iDeiD~~~~ 293 (338)
.++++.+...+ ....|++||++|.+..
T Consensus 90 vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~ 122 (319)
T PRK06090 90 VEQIRQCNRLAQESSQLNGYRLFVIEPADAMNE 122 (319)
T ss_pred HHHHHHHHHHHhhCcccCCceEEEecchhhhCH
Confidence 45566554443 2467999999999964
No 263
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.32 E-value=0.00035 Score=65.54 Aligned_cols=86 Identities=19% Similarity=0.354 Sum_probs=54.0
Q ss_pred cccCChhHHHHHHHHHHhhh-----cCc--eeeeCCCCCCcHHHHHHHHHHh---CCc--EE-----EEecCCcCC----
Q 035959 208 TLAMDTDMKKMIMDDLERAW-----KRG--YLLFGPPGTGKSSLIAAMANYL---HFD--VY-----DLELSSVEG---- 266 (338)
Q Consensus 208 ~l~~~~~~k~~i~~~l~~~~-----~~g--~LL~GppGtGKT~l~~aia~~l---~~~--~~-----~l~~~~~~~---- 266 (338)
.+.++.-.++.|+..+...| ++. +-|||+|||||++.++.+|+.+ |.. ++ ..++..-..
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~Y 162 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIEDY 162 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHHHH
Confidence 36777777888888887722 233 3499999999999999999987 221 10 111111111
Q ss_pred chHHHHHHHhc---CCCcEEEEcCCCccCC
Q 035959 267 NKHLRKVLIAT---ENKSILVVGDIDCCTE 293 (338)
Q Consensus 267 ~~~l~~~l~~~---~~~~Il~iDeiD~~~~ 293 (338)
..+|..-+.+. -+++|.|+||+|.+.+
T Consensus 163 k~eL~~~v~~~v~~C~rslFIFDE~DKmp~ 192 (344)
T KOG2170|consen 163 KEELKNRVRGTVQACQRSLFIFDEVDKLPP 192 (344)
T ss_pred HHHHHHHHHHHHHhcCCceEEechhhhcCH
Confidence 12233222222 2789999999999864
No 264
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.31 E-value=0.0012 Score=63.28 Aligned_cols=80 Identities=18% Similarity=0.241 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHh-hhcCceeeeCCCCCCcHHHHHHHHHHhC---------------------CcEEEEe--cCCc-----
Q 035959 214 DMKKMIMDDLER-AWKRGYLLFGPPGTGKSSLIAAMANYLH---------------------FDVYDLE--LSSV----- 264 (338)
Q Consensus 214 ~~k~~i~~~l~~-~~~~g~LL~GppGtGKT~l~~aia~~l~---------------------~~~~~l~--~~~~----- 264 (338)
..++.+...+.. ..+..+||+||+|+||+.+|.++|+.+- -+++.++ ...-
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~ 90 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLR 90 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCccccccc
Confidence 445566666554 3345799999999999999999998661 2455553 1110
Q ss_pred --CCchHHHHHHHhcC------CCcEEEEcCCCccCC
Q 035959 265 --EGNKHLRKVLIATE------NKSILVVGDIDCCTE 293 (338)
Q Consensus 265 --~~~~~l~~~l~~~~------~~~Il~iDeiD~~~~ 293 (338)
...+.++.+...+. ..-|+|||++|.+..
T Consensus 91 ~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~ 127 (319)
T PRK08769 91 TEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINR 127 (319)
T ss_pred ccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCH
Confidence 12345555555442 457999999999964
No 265
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.30 E-value=0.00067 Score=60.50 Aligned_cols=35 Identities=23% Similarity=0.406 Sum_probs=28.8
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSS 263 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~ 263 (338)
.-++++||||+|||+++..++... +..+.+++...
T Consensus 13 ~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 13 TITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 346899999999999998888654 66788888875
No 266
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.29 E-value=0.0013 Score=64.68 Aligned_cols=65 Identities=23% Similarity=0.457 Sum_probs=46.1
Q ss_pred cCceeeeCCCCCCcHHHHHHHHHHh-------CCcEEEEecCCcC----------------------CchHHHHHHHhcC
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMANYL-------HFDVYDLELSSVE----------------------GNKHLRKVLIATE 278 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia~~l-------~~~~~~l~~~~~~----------------------~~~~l~~~l~~~~ 278 (338)
++-++|+||+|+|||++++.+|..+ +..+..+++.... ...++...+....
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 3457899999999999999999876 2445545443321 1234555566667
Q ss_pred CCcEEEEcCCCccC
Q 035959 279 NKSILVVGDIDCCT 292 (338)
Q Consensus 279 ~~~Il~iDeiD~~~ 292 (338)
...+|+||.+....
T Consensus 254 ~~DlVLIDTaGr~~ 267 (388)
T PRK12723 254 DFDLVLVDTIGKSP 267 (388)
T ss_pred CCCEEEEcCCCCCc
Confidence 78999999998775
No 267
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=97.28 E-value=0.0003 Score=69.15 Aligned_cols=44 Identities=25% Similarity=0.590 Sum_probs=39.0
Q ss_pred ccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 205 TFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 205 ~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
++++...++.+++++.+.. +|+|+.||||.|||++++|+|.++.
T Consensus 245 ~ledY~L~dkl~eRL~era-----eGILIAG~PGaGKsTFaqAlAefy~ 288 (604)
T COG1855 245 SLEDYGLSDKLKERLEERA-----EGILIAGAPGAGKSTFAQALAEFYA 288 (604)
T ss_pred chhhcCCCHHHHHHHHhhh-----cceEEecCCCCChhHHHHHHHHHHH
Confidence 6788888998888887754 7999999999999999999999884
No 268
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.28 E-value=0.00023 Score=62.05 Aligned_cols=29 Identities=24% Similarity=0.500 Sum_probs=25.1
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhCCcEEEE
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLHFDVYDL 259 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~~~~~~l 259 (338)
+++.||||+|||++++.+|..++...+..
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is~ 30 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLSA 30 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 57999999999999999999998755443
No 269
>PRK06217 hypothetical protein; Validated
Probab=97.28 E-value=0.00024 Score=62.34 Aligned_cols=31 Identities=29% Similarity=0.426 Sum_probs=27.8
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCCcEEEEe
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHFDVYDLE 260 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~~~~~l~ 260 (338)
.++|.|+||+|||++++++++.++.+++.+|
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 3789999999999999999999998877664
No 270
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.27 E-value=0.0002 Score=62.29 Aligned_cols=33 Identities=30% Similarity=0.407 Sum_probs=30.4
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcEEEEec
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYDLEL 261 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~ 261 (338)
+.+.|.|++|+|||++.+++|+.+++++++.|-
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~ 35 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQ 35 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchH
Confidence 568999999999999999999999999998864
No 271
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.26 E-value=0.00063 Score=70.84 Aligned_cols=49 Identities=31% Similarity=0.468 Sum_probs=41.8
Q ss_pred CCccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 203 PSTFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 203 p~~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
|..|+.+++.++.++.+...+.. ++.++|+||||||||+++++++..+.
T Consensus 27 ~~~~~~vigq~~a~~~L~~~~~~--~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 27 ERLIDQVIGQEHAVEVIKKAAKQ--RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred cccHHHcCChHHHHHHHHHHHHh--CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 67899999998888877765654 35899999999999999999999875
No 272
>PRK13764 ATPase; Provisional
Probab=97.26 E-value=0.00077 Score=69.60 Aligned_cols=83 Identities=17% Similarity=0.329 Sum_probs=51.5
Q ss_pred CCccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHhCC---cEEEEe------cCC-cCC------
Q 035959 203 PSTFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYLHF---DVYDLE------LSS-VEG------ 266 (338)
Q Consensus 203 p~~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l~~---~~~~l~------~~~-~~~------ 266 (338)
+.+++++..++.+++.+. ..+.++|+.||||+||||+++|++.++.. .+..++ +.. +..
T Consensus 237 ~~~Le~l~l~~~l~~~l~-----~~~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~~~~ 311 (602)
T PRK13764 237 KLSLEDYNLSEKLKERLE-----ERAEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSKLEG 311 (602)
T ss_pred CCCHHHhCCCHHHHHHHH-----hcCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEeeccc
Confidence 346788877665544433 23578999999999999999999998852 232221 111 010
Q ss_pred -chHHHHHHHhcCCCcEEEEcCCCcc
Q 035959 267 -NKHLRKVLIATENKSILVVGDIDCC 291 (338)
Q Consensus 267 -~~~l~~~l~~~~~~~Il~iDeiD~~ 291 (338)
...+.+.+. ..+|+++++||+-..
T Consensus 312 ~~~~~~~~lL-R~rPD~IivGEiRd~ 336 (602)
T PRK13764 312 SMEETADILL-LVRPDYTIYDEMRKT 336 (602)
T ss_pred cHHHHHHHHH-hhCCCEEEECCCCCH
Confidence 012222221 247999999999754
No 273
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.26 E-value=0.00025 Score=59.84 Aligned_cols=29 Identities=31% Similarity=0.394 Sum_probs=24.9
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhCCcEEEE
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLHFDVYDL 259 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~~~~~~l 259 (338)
++|.|+||+|||++++.++..++..++..
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~~ 30 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFIDG 30 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEeC
Confidence 57999999999999999999988765543
No 274
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.25 E-value=0.0011 Score=61.47 Aligned_cols=26 Identities=31% Similarity=0.575 Sum_probs=23.0
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHF 254 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~ 254 (338)
..+++.||+|+|||+|++.+++.+..
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccc
Confidence 45799999999999999999998754
No 275
>PRK14532 adenylate kinase; Provisional
Probab=97.24 E-value=0.00027 Score=62.09 Aligned_cols=30 Identities=23% Similarity=0.438 Sum_probs=26.5
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCCcEEEE
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHFDVYDL 259 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~~~~~l 259 (338)
.+++.||||+|||++++.+|..+|+..+..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 378999999999999999999999876654
No 276
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.23 E-value=0.00026 Score=60.66 Aligned_cols=29 Identities=31% Similarity=0.550 Sum_probs=24.8
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhCCcEEEE
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLHFDVYDL 259 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~~~~~~l 259 (338)
++|.||||+|||++++.++..++..++..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~ 29 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEG 29 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeC
Confidence 46899999999999999999998665443
No 277
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=97.23 E-value=0.0011 Score=66.20 Aligned_cols=87 Identities=16% Similarity=0.171 Sum_probs=65.6
Q ss_pred ccccccCChhHHHHHHHHHHh--hhcCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCCchHHHHHHHh---
Q 035959 205 TFDTLAMDTDMKKMIMDDLER--AWKRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEGNKHLRKVLIA--- 276 (338)
Q Consensus 205 ~f~~l~~~~~~k~~i~~~l~~--~~~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~~~~l~~~l~~--- 276 (338)
.+..+++..+.-+++.+.+.+ +....+|++|++||||..+|++|...- +.+++.+||..+-.+ -+...|+.
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~-l~ESELFGhek 217 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN-LLESELFGHEK 217 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH-HHHHHhhcccc
Confidence 455677777777777777776 445679999999999999999999877 459999999987632 23332322
Q ss_pred ---------------cCCCcEEEEcCCCccC
Q 035959 277 ---------------TENKSILVVGDIDCCT 292 (338)
Q Consensus 277 ---------------~~~~~Il~iDeiD~~~ 292 (338)
.+....||||||..+.
T Consensus 218 GAFTGA~~~r~G~fE~A~GGTLfLDEI~~mp 248 (464)
T COG2204 218 GAFTGAITRRIGRFEQANGGTLFLDEIGEMP 248 (464)
T ss_pred cCcCCcccccCcceeEcCCceEEeeccccCC
Confidence 1357899999999875
No 278
>PRK13948 shikimate kinase; Provisional
Probab=97.23 E-value=0.00031 Score=61.94 Aligned_cols=34 Identities=26% Similarity=0.197 Sum_probs=31.1
Q ss_pred cCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEec
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLEL 261 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~ 261 (338)
++.++|.|++|+|||++++.+|+.+++++++.|.
T Consensus 10 ~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~ 43 (182)
T PRK13948 10 VTWVALAGFMGTGKSRIGWELSRALMLHFIDTDR 43 (182)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCH
Confidence 4778999999999999999999999999988773
No 279
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=97.22 E-value=0.00078 Score=70.07 Aligned_cols=50 Identities=34% Similarity=0.480 Sum_probs=40.3
Q ss_pred CccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHhCCc
Q 035959 204 STFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYLHFD 255 (338)
Q Consensus 204 ~~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l~~~ 255 (338)
..++.+++.++.++.+...+.. +++++|+||||||||++++++++.++..
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~~--~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAKQ--KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHHc--CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 3567888888877766666654 3689999999999999999999999643
No 280
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.22 E-value=0.0003 Score=58.61 Aligned_cols=30 Identities=30% Similarity=0.459 Sum_probs=27.6
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhCCcEEEEe
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLHFDVYDLE 260 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~~~~~~l~ 260 (338)
+.+.|+||+|||++++.+|..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 578999999999999999999999988776
No 281
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.22 E-value=0.0015 Score=67.34 Aligned_cols=64 Identities=17% Similarity=0.369 Sum_probs=46.6
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh----------CCcEEEEecCCcCCchH----------------------HHHHHH--
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL----------HFDVYDLELSSVEGNKH----------------------LRKVLI-- 275 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l----------~~~~~~l~~~~~~~~~~----------------------l~~~l~-- 275 (338)
++++.|-||||||.++..+-+.+ .++++.|+.-.+.+..+ |..-|.
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 57899999999999999999866 36777887776664222 112222
Q ss_pred -hcCCCcEEEEcCCCccCC
Q 035959 276 -ATENKSILVVGDIDCCTE 293 (338)
Q Consensus 276 -~~~~~~Il~iDeiD~~~~ 293 (338)
.-..++||+|||+|.+..
T Consensus 504 k~~~~~~VvLiDElD~Lvt 522 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVT 522 (767)
T ss_pred CCCCCCEEEEeccHHHHhc
Confidence 012579999999999986
No 282
>PRK14531 adenylate kinase; Provisional
Probab=97.21 E-value=0.00033 Score=61.54 Aligned_cols=31 Identities=26% Similarity=0.485 Sum_probs=27.0
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcEEEE
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYDL 259 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~~~l 259 (338)
+-+++.||||+|||++++.+|..+|...+..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 4589999999999999999999998876543
No 283
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.21 E-value=0.0023 Score=60.39 Aligned_cols=80 Identities=11% Similarity=0.099 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHh-hhcCceeeeCCCCCCcHHHHHHHHHHhC----------------CcEEEEecCC---cCCchHHHHH
Q 035959 214 DMKKMIMDDLER-AWKRGYLLFGPPGTGKSSLIAAMANYLH----------------FDVYDLELSS---VEGNKHLRKV 273 (338)
Q Consensus 214 ~~k~~i~~~l~~-~~~~g~LL~GppGtGKT~l~~aia~~l~----------------~~~~~l~~~~---~~~~~~l~~~ 273 (338)
...+.+...+.. .-+..|||+||+|+||+.+|.++|..+- .+++.+.... ....+.++.+
T Consensus 4 ~~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l 83 (290)
T PRK05917 4 AAWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAI 83 (290)
T ss_pred HHHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHH
Confidence 345556666655 3456899999999999999999998762 2455553322 1234455655
Q ss_pred HHhcC------CCcEEEEcCCCccCC
Q 035959 274 LIATE------NKSILVVGDIDCCTE 293 (338)
Q Consensus 274 l~~~~------~~~Il~iDeiD~~~~ 293 (338)
...+. ..-|++||++|.+..
T Consensus 84 ~~~~~~~p~e~~~kv~ii~~ad~mt~ 109 (290)
T PRK05917 84 KKQIWIHPYESPYKIYIIHEADRMTL 109 (290)
T ss_pred HHHHhhCccCCCceEEEEechhhcCH
Confidence 55542 467999999999965
No 284
>PRK13946 shikimate kinase; Provisional
Probab=97.20 E-value=0.00029 Score=61.94 Aligned_cols=34 Identities=32% Similarity=0.439 Sum_probs=31.0
Q ss_pred cCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEec
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLEL 261 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~ 261 (338)
++.++|.|+||+|||++++.+|+.+|+++++.|.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 3678999999999999999999999999988774
No 285
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.19 E-value=0.0017 Score=60.57 Aligned_cols=88 Identities=19% Similarity=0.334 Sum_probs=54.6
Q ss_pred CCccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHhC---CcEEEEe------cCCcC-----C--
Q 035959 203 PSTFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYLH---FDVYDLE------LSSVE-----G-- 266 (338)
Q Consensus 203 p~~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l~---~~~~~l~------~~~~~-----~-- 266 (338)
+.+++++.+.++..+.+.+.+.. ....+++.||+|+|||+++.++..++. ..++.++ +..+. .
T Consensus 56 ~~~l~~lg~~~~~~~~l~~~~~~-~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~~~ 134 (264)
T cd01129 56 ILDLEKLGLKPENLEIFRKLLEK-PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKA 134 (264)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhc-CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCCcC
Confidence 34678888877766655444432 223478999999999999999987774 2344332 11111 0
Q ss_pred chHHHHHHHhc--CCCcEEEEcCCCcc
Q 035959 267 NKHLRKVLIAT--ENKSILVVGDIDCC 291 (338)
Q Consensus 267 ~~~l~~~l~~~--~~~~Il~iDeiD~~ 291 (338)
...+..++..+ ..|++|+++||..-
T Consensus 135 ~~~~~~~l~~~lR~~PD~i~vgEiR~~ 161 (264)
T cd01129 135 GLTFARGLRAILRQDPDIIMVGEIRDA 161 (264)
T ss_pred CcCHHHHHHHHhccCCCEEEeccCCCH
Confidence 11233333333 37999999999654
No 286
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=97.19 E-value=0.0014 Score=64.12 Aligned_cols=50 Identities=26% Similarity=0.290 Sum_probs=43.0
Q ss_pred CccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 204 STFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 204 ~~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
-.|.-+++.+..|..+.-....|.-.|+|+-|+.|||||++++|+|..|.
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~P~iggvLI~G~kGtaKSt~~Rala~LLp 63 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVDPQIGGALIAGEKGTAKSTLARALADLLP 63 (423)
T ss_pred cchhhhcCchHHHHHHhhhhcccccceeEEecCCCccHHHHHHHHHHhCC
Confidence 35677788888998888877667778999999999999999999999884
No 287
>PF13245 AAA_19: Part of AAA domain
Probab=97.18 E-value=0.00059 Score=51.42 Aligned_cols=33 Identities=36% Similarity=0.578 Sum_probs=21.1
Q ss_pred ceeeeCCCCCCcHHHHH-HHHHHh------CCcEEEEecC
Q 035959 230 GYLLFGPPGTGKSSLIA-AMANYL------HFDVYDLELS 262 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~-aia~~l------~~~~~~l~~~ 262 (338)
-+++.||||||||+++. .++..+ +..+..+..+
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t 51 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT 51 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence 35569999999996544 444444 4455555443
No 288
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.18 E-value=0.00034 Score=61.40 Aligned_cols=29 Identities=31% Similarity=0.555 Sum_probs=25.8
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhCCcEEEE
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLHFDVYDL 259 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~~~~~~l 259 (338)
+++.||||+|||++++.+|..++..++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 68999999999999999999998776554
No 289
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.18 E-value=0.0013 Score=58.66 Aligned_cols=65 Identities=15% Similarity=0.252 Sum_probs=42.8
Q ss_pred CceeeeCCCCCCcHHHHHHHHHH-----hCCcEE-----------EEecCC---cC---C-----chHHHHHHHhcC--C
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANY-----LHFDVY-----------DLELSS---VE---G-----NKHLRKVLIATE--N 279 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~-----l~~~~~-----------~l~~~~---~~---~-----~~~l~~~l~~~~--~ 279 (338)
+.++|.||+|+|||++++.++.. .|.++- ....+. +. + -.++..++.... .
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~ 105 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKGE 105 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCCC
Confidence 57899999999999999999843 343320 111110 00 0 134567777777 8
Q ss_pred CcEEEEcCCCccCC
Q 035959 280 KSILVVGDIDCCTE 293 (338)
Q Consensus 280 ~~Il~iDeiD~~~~ 293 (338)
+.++++||.-.-.+
T Consensus 106 p~llllDEp~~glD 119 (199)
T cd03283 106 PVLFLLDEIFKGTN 119 (199)
T ss_pred CeEEEEecccCCCC
Confidence 99999999865544
No 290
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.18 E-value=0.0012 Score=63.49 Aligned_cols=61 Identities=26% Similarity=0.408 Sum_probs=48.9
Q ss_pred ccc-cccCChhHHHHHHHHHHh------hhcCceeeeCCCCCCcHHHHHHHHHHh-CCcEEEEecCCcC
Q 035959 205 TFD-TLAMDTDMKKMIMDDLER------AWKRGYLLFGPPGTGKSSLIAAMANYL-HFDVYDLELSSVE 265 (338)
Q Consensus 205 ~f~-~l~~~~~~k~~i~~~l~~------~~~~g~LL~GppGtGKT~l~~aia~~l-~~~~~~l~~~~~~ 265 (338)
.|+ .+.+-++...++++.+.. ..++-++|.||+|+|||+++..+.+.+ .+++|.+..+.+.
T Consensus 58 ~f~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm~ 126 (358)
T PF08298_consen 58 FFEDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPMH 126 (358)
T ss_pred CccccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCccc
Confidence 455 677788889999999887 345568999999999999999999988 4678877665554
No 291
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.00031 Score=69.65 Aligned_cols=48 Identities=29% Similarity=0.461 Sum_probs=39.2
Q ss_pred CCccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHh
Q 035959 203 PSTFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 203 p~~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l 252 (338)
..+|.++.+++..|+.+.-.. +-.+++|++||||||||+++.-+..-+
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAA--AGgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAA--AGGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHH--hcCCcEEEecCCCCchHHhhhhhcccC
Confidence 448999999999888775443 446789999999999999999887655
No 292
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.17 E-value=0.00067 Score=54.70 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=20.1
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l 252 (338)
++++++||+|+|||.++.+.+..+
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 368999999999999887777655
No 293
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.17 E-value=0.0024 Score=61.41 Aligned_cols=99 Identities=16% Similarity=0.205 Sum_probs=72.6
Q ss_pred cccccCCCCCccccccCChhHHHHHHHHHHh--hhcCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCCchH
Q 035959 195 RQSAILDHPSTFDTLAMDTDMKKMIMDDLER--AWKRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEGNKH 269 (338)
Q Consensus 195 w~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~--~~~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~~~~ 269 (338)
...++..+-..|+.++.....-+.++....+ .....+|+.|++||||-.+|+|..... ..++.-++|+.+-.+..
T Consensus 192 ~~~~~~~~~~~F~~~v~~S~~mk~~v~qA~k~AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~a 271 (511)
T COG3283 192 LQNVAAQDVSGFEQIVAVSPKMKHVVEQAQKLAMLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAA 271 (511)
T ss_pred HhhcccccccchHHHhhccHHHHHHHHHHHHhhccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHh
Confidence 4445667777899999888777777776665 445679999999999999999865544 57899999998875332
Q ss_pred HHHHH------------HhcCCCcEEEEcCCCccCC
Q 035959 270 LRKVL------------IATENKSILVVGDIDCCTE 293 (338)
Q Consensus 270 l~~~l------------~~~~~~~Il~iDeiD~~~~ 293 (338)
-..+| .+.+...-+++|||-.+.+
T Consensus 272 EsElFG~apg~~gk~GffE~AngGTVlLDeIgEmSp 307 (511)
T COG3283 272 ESELFGHAPGDEGKKGFFEQANGGTVLLDEIGEMSP 307 (511)
T ss_pred HHHHhcCCCCCCCccchhhhccCCeEEeehhhhcCH
Confidence 22333 3334567889999988865
No 294
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.16 E-value=0.0004 Score=60.51 Aligned_cols=33 Identities=36% Similarity=0.665 Sum_probs=30.0
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcEEEEec
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYDLEL 261 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~ 261 (338)
..++|.||+|+|||++++.+|+.+++++++.+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 568999999999999999999999999887764
No 295
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.16 E-value=0.0011 Score=59.89 Aligned_cols=33 Identities=24% Similarity=0.420 Sum_probs=28.2
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELS 262 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~ 262 (338)
-++++||||+|||+++..+|... +..++++++.
T Consensus 25 i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 25 ITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 36899999999999999998755 6788888877
No 296
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.16 E-value=0.00044 Score=59.72 Aligned_cols=32 Identities=28% Similarity=0.481 Sum_probs=29.0
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcEEEEe
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYDLE 260 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~ 260 (338)
..++|.|+||+|||++++.+|..+|+++++.|
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 35789999999999999999999999988775
No 297
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.15 E-value=0.0015 Score=56.82 Aligned_cols=63 Identities=16% Similarity=0.165 Sum_probs=45.7
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC-----------------------chHHHHHHHhcCCCcEEEEcC
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG-----------------------NKHLRKVLIATENKSILVVGD 287 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~-----------------------~~~l~~~l~~~~~~~Il~iDe 287 (338)
+|+.|+||+|||+++..++...+.+++++......+ ..++.+.+.+...+.+|+||-
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~~VLIDc 81 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGDVVLIDC 81 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCCEEEEEc
Confidence 589999999999999999988777887776654332 123444444434567899998
Q ss_pred CCccCC
Q 035959 288 IDCCTE 293 (338)
Q Consensus 288 iD~~~~ 293 (338)
+..+..
T Consensus 82 lt~~~~ 87 (169)
T cd00544 82 LTLWVT 87 (169)
T ss_pred HhHHHH
Confidence 888765
No 298
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.13 E-value=0.0034 Score=52.54 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=23.2
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHF 254 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~ 254 (338)
.-++|.|+.|+|||++++++++.++.
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 34689999999999999999999864
No 299
>PRK06547 hypothetical protein; Provisional
Probab=97.13 E-value=0.00065 Score=59.36 Aligned_cols=33 Identities=30% Similarity=0.461 Sum_probs=27.6
Q ss_pred cCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEe
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLE 260 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~ 260 (338)
..-+++.|++|+|||++++.+++.++..++..+
T Consensus 15 ~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 15 MITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 345788999999999999999999887766544
No 300
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.11 E-value=0.00075 Score=64.42 Aligned_cols=49 Identities=29% Similarity=0.331 Sum_probs=37.1
Q ss_pred ChhHHHHHHHHHHh--------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEe
Q 035959 212 DTDMKKMIMDDLER--------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLE 260 (338)
Q Consensus 212 ~~~~k~~i~~~l~~--------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~ 260 (338)
+++.++.+.+.++. ..+..+.|.|+||+|||++++.+|..+|+++++++
T Consensus 109 ~~~~~~~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 109 SPAQLARVRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred CHHHHHHHHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 44444444444444 33456899999999999999999999999998765
No 301
>PRK06762 hypothetical protein; Provisional
Probab=97.10 E-value=0.00055 Score=58.79 Aligned_cols=33 Identities=15% Similarity=0.235 Sum_probs=27.3
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcEEEEec
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYDLEL 261 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~ 261 (338)
.-+++.|+||+|||++++.+++.++..++.++.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~ 35 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQ 35 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecH
Confidence 457899999999999999999999656655543
No 302
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=97.07 E-value=0.00072 Score=72.28 Aligned_cols=64 Identities=22% Similarity=0.319 Sum_probs=39.6
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCC-------cEEEEecCCcCC-c----hH--HHHHHHhcCCCcEEEEcCCCccCC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHF-------DVYDLELSSVEG-N----KH--LRKVLIATENKSILVVGDIDCCTE 293 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~-------~~~~l~~~~~~~-~----~~--l~~~l~~~~~~~Il~iDeiD~~~~ 293 (338)
.+||.|+||||||.+++++++.... +...+.++.... . .. +..=....+...+++|||+|.+..
T Consensus 494 hVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkms~ 571 (915)
T PTZ00111 494 NVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVLANGGVCCIDELDKCHN 571 (915)
T ss_pred eEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccCCcEEEcCCCeEEecchhhCCH
Confidence 5899999999999999999986532 333333332211 0 00 000001123578999999999864
No 303
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.07 E-value=0.002 Score=61.30 Aligned_cols=64 Identities=22% Similarity=0.347 Sum_probs=41.4
Q ss_pred hcCceeeeCCCCCCcHHHHHHHHHHhC-----CcEEEEecC-CcC-------------CchHHHHHHHhc--CCCcEEEE
Q 035959 227 WKRGYLLFGPPGTGKSSLIAAMANYLH-----FDVYDLELS-SVE-------------GNKHLRKVLIAT--ENKSILVV 285 (338)
Q Consensus 227 ~~~g~LL~GppGtGKT~l~~aia~~l~-----~~~~~l~~~-~~~-------------~~~~l~~~l~~~--~~~~Il~i 285 (338)
.+.++++.||+|+|||++++|++.++. ..++.++-. ++. ....+.+++..+ ..|+.|++
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iiv 210 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIV 210 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEE
Confidence 356899999999999999999998862 223322111 000 011344555443 37899999
Q ss_pred cCCCc
Q 035959 286 GDIDC 290 (338)
Q Consensus 286 DeiD~ 290 (338)
.||-.
T Consensus 211 GEiR~ 215 (299)
T TIGR02782 211 GEVRG 215 (299)
T ss_pred eccCC
Confidence 99864
No 304
>PRK14530 adenylate kinase; Provisional
Probab=97.06 E-value=0.00056 Score=61.62 Aligned_cols=29 Identities=28% Similarity=0.483 Sum_probs=26.3
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcEE
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVY 257 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~~ 257 (338)
..++|.||||+|||++++.+|..++++.+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i 32 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHV 32 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 45889999999999999999999998766
No 305
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.06 E-value=0.00045 Score=73.94 Aligned_cols=98 Identities=26% Similarity=0.361 Sum_probs=68.7
Q ss_pred CCCCCccccccCChhHHHHHHHHHHhh---------------hcC-ceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCC
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLERA---------------WKR-GYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSS 263 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~~---------------~~~-g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~ 263 (338)
.+.|.....+.+....-..+.+.+... ... .++++||||+|||+.+.++|..+|+.++..|.+.
T Consensus 313 k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~ 392 (871)
T KOG1968|consen 313 KYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASD 392 (871)
T ss_pred ccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeecCccc
Confidence 344444455555444444555555541 112 3589999999999999999999999999999999
Q ss_pred cCCchHHHHHHHhcC--------------------CCcEEEEcCCCccCCccccc
Q 035959 264 VEGNKHLRKVLIATE--------------------NKSILVVGDIDCCTELQDRS 298 (338)
Q Consensus 264 ~~~~~~l~~~l~~~~--------------------~~~Il~iDeiD~~~~~~~r~ 298 (338)
..+...+...+..+. ..-||++||+|-+.. .+|+
T Consensus 393 ~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~-~dRg 446 (871)
T KOG1968|consen 393 VRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG-EDRG 446 (871)
T ss_pred cccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc-hhhh
Confidence 887666554444321 133999999999987 4564
No 306
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.04 E-value=0.00062 Score=59.32 Aligned_cols=31 Identities=19% Similarity=0.387 Sum_probs=26.2
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcEEEE
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYDL 259 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~~~l 259 (338)
.-+++.||||+|||++++.++..+|+..+..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~ 34 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHLST 34 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 3468999999999999999999998765544
No 307
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=97.02 E-value=0.0035 Score=61.36 Aligned_cols=43 Identities=21% Similarity=0.341 Sum_probs=32.6
Q ss_pred ccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHh
Q 035959 205 TFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 205 ~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l 252 (338)
+++++...+...+.+. . ....+|+.||+|+|||++++++..++
T Consensus 131 ~l~~lgl~~~~~~~l~----~-~~GlilI~G~TGSGKTT~l~al~~~i 173 (372)
T TIGR02525 131 DLKQMGIEPDLFNSLL----P-AAGLGLICGETGSGKSTLAASIYQHC 173 (372)
T ss_pred CHHHcCCCHHHHHHHH----h-cCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 6788887776544433 2 23346899999999999999999887
No 308
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.00 E-value=0.00067 Score=60.93 Aligned_cols=34 Identities=38% Similarity=0.552 Sum_probs=26.6
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSS 263 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~ 263 (338)
-++++||+|||||.++-++|+.+|.+++.+|--.
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq 36 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQ 36 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGG
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEeccee
Confidence 3689999999999999999999999998886544
No 309
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.00 E-value=0.00099 Score=61.95 Aligned_cols=124 Identities=18% Similarity=0.244 Sum_probs=76.8
Q ss_pred CCCCCccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHh-CCc-----------------------
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYL-HFD----------------------- 255 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l-~~~----------------------- 255 (338)
...|.+++.+....+....+........-..+++|||+|+||-+.+.++-+++ |..
T Consensus 6 kyrpksl~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEist 85 (351)
T KOG2035|consen 6 KYRPKSLDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEIST 85 (351)
T ss_pred hcCcchhhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEE
Confidence 56788898888877776666655543223579999999999999999998887 311
Q ss_pred -----EEEEecCCcCCchH--HHHHHHhcC-----------CCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhh
Q 035959 256 -----VYDLELSSVEGNKH--LRKVLIATE-----------NKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQIT 317 (338)
Q Consensus 256 -----~~~l~~~~~~~~~~--l~~~l~~~~-----------~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 317 (338)
..+++.++....++ +..++.+++ .-.+++|-|+|.+.. ..+ ...++|
T Consensus 86 vsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~----dAQ-----------~aLRRT 150 (351)
T KOG2035|consen 86 VSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTR----DAQ-----------HALRRT 150 (351)
T ss_pred ecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhH----HHH-----------HHHHHH
Confidence 11223333332221 345554442 346999999999964 221 234666
Q ss_pred HHHHHHHhcCCcCCCCCcccC
Q 035959 318 LSGLLNFTDGLWSSCGDERII 338 (338)
Q Consensus 318 ls~lLn~iDgl~s~~g~erii 338 (338)
+.-.-+.+-=+.+|..-.|||
T Consensus 151 MEkYs~~~RlIl~cns~SriI 171 (351)
T KOG2035|consen 151 MEKYSSNCRLILVCNSTSRII 171 (351)
T ss_pred HHHHhcCceEEEEecCcccch
Confidence 666666555555444334443
No 310
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.00 E-value=0.0015 Score=65.60 Aligned_cols=64 Identities=25% Similarity=0.333 Sum_probs=44.7
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCC--------------------chHHHHHHHhc--CCCcEEE
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEG--------------------NKHLRKVLIAT--ENKSILV 284 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~--------------------~~~l~~~l~~~--~~~~Il~ 284 (338)
-++|+||||+|||+|+..+|... +.++++++..+-.. +.++.+++... .++.+||
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~~~lVV 161 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEEKPDLVV 161 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhhCCCEEE
Confidence 46899999999999999988765 56788887654211 11223333332 2678999
Q ss_pred EcCCCccCC
Q 035959 285 VGDIDCCTE 293 (338)
Q Consensus 285 iDeiD~~~~ 293 (338)
||.|..+..
T Consensus 162 IDSIq~l~~ 170 (446)
T PRK11823 162 IDSIQTMYS 170 (446)
T ss_pred Eechhhhcc
Confidence 999998864
No 311
>PF14516 AAA_35: AAA-like domain
Probab=97.00 E-value=0.0032 Score=60.68 Aligned_cols=55 Identities=13% Similarity=0.195 Sum_probs=40.7
Q ss_pred cCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcC
Q 035959 210 AMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVE 265 (338)
Q Consensus 210 ~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~ 265 (338)
+..++.-+.+.+.+.++ ..-+.++||..+||||+...+.+.+ |+....+++..+.
T Consensus 14 i~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~ 71 (331)
T PF14516_consen 14 IERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLG 71 (331)
T ss_pred cCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCC
Confidence 34445666677666642 3446799999999999999888766 7888888887754
No 312
>PRK02496 adk adenylate kinase; Provisional
Probab=96.98 E-value=0.00065 Score=59.46 Aligned_cols=29 Identities=31% Similarity=0.644 Sum_probs=25.9
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhCCcEEEE
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLHFDVYDL 259 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~~~~~~l 259 (338)
+++.||||+|||++++.+|..++...+..
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 78999999999999999999998876644
No 313
>PRK14528 adenylate kinase; Provisional
Probab=96.97 E-value=0.00075 Score=59.56 Aligned_cols=29 Identities=24% Similarity=0.552 Sum_probs=25.7
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCCcEEE
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHFDVYD 258 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~~~~~ 258 (338)
.+++.||||+|||++++.+|..++++.+.
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is 31 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIS 31 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 47899999999999999999999877654
No 314
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.96 E-value=0.004 Score=62.08 Aligned_cols=62 Identities=23% Similarity=0.315 Sum_probs=44.0
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh-----CCcEEEEecCCcC----------------------CchHHHHHHHhcCCCc
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL-----HFDVYDLELSSVE----------------------GNKHLRKVLIATENKS 281 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l-----~~~~~~l~~~~~~----------------------~~~~l~~~l~~~~~~~ 281 (338)
+.++|.||+|+|||+++..+|..+ +..+..+++.... +..++...+.......
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~D 301 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDCD 301 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCCC
Confidence 346899999999999999988754 3567777665421 1234555666666788
Q ss_pred EEEEcCCCc
Q 035959 282 ILVVGDIDC 290 (338)
Q Consensus 282 Il~iDeiD~ 290 (338)
+|+||..-.
T Consensus 302 lVlIDt~G~ 310 (424)
T PRK05703 302 VILIDTAGR 310 (424)
T ss_pred EEEEeCCCC
Confidence 999997644
No 315
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=96.96 E-value=0.00073 Score=63.31 Aligned_cols=59 Identities=31% Similarity=0.358 Sum_probs=40.7
Q ss_pred cccCChhHHH--HHHHHHHh---hhcCceeeeCCCCCCcHHHHHHHHHHhCC--cEEEEecCCcCC
Q 035959 208 TLAMDTDMKK--MIMDDLER---AWKRGYLLFGPPGTGKSSLIAAMANYLHF--DVYDLELSSVEG 266 (338)
Q Consensus 208 ~l~~~~~~k~--~i~~~l~~---~~~~g~LL~GppGtGKT~l~~aia~~l~~--~~~~l~~~~~~~ 266 (338)
.++++.+.++ -++-++.. -..|++||.||||||||.|+-||+.++|. ++.-+-.+++.+
T Consensus 39 g~vGQ~~AReAagiivdlik~KkmaGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvyS 104 (456)
T KOG1942|consen 39 GFVGQENAREAAGIIVDLIKSKKMAGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVYS 104 (456)
T ss_pred ccccchhhhhhhhHHHHHHHhhhccCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhhh
Confidence 4566555543 23444443 34578999999999999999999999975 555555555544
No 316
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=96.96 E-value=0.0022 Score=64.03 Aligned_cols=90 Identities=13% Similarity=0.160 Sum_probs=67.5
Q ss_pred CccccccCChhHHHHHHHHHHh--hhcCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCC---chHHH----
Q 035959 204 STFDTLAMDTDMKKMIMDDLER--AWKRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEG---NKHLR---- 271 (338)
Q Consensus 204 ~~f~~l~~~~~~k~~i~~~l~~--~~~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~---~~~l~---- 271 (338)
..+..+++..+...++++.++- +....+||.|++||||..+|+||...- +.+++.+||+.+-. +++|-
T Consensus 220 ~~~~~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFGHeK 299 (550)
T COG3604 220 LEVGGIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFGHEK 299 (550)
T ss_pred cccccceecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHhcccc
Confidence 3667888888877778777766 455679999999999999999999877 57899999998753 22221
Q ss_pred HHHH----------hcCCCcEEEEcCCCccCC
Q 035959 272 KVLI----------ATENKSILVVGDIDCCTE 293 (338)
Q Consensus 272 ~~l~----------~~~~~~Il~iDeiD~~~~ 293 (338)
-.|. +++...-||+|||.-+.-
T Consensus 300 GAFTGA~~~r~GrFElAdGGTLFLDEIGelPL 331 (550)
T COG3604 300 GAFTGAINTRRGRFELADGGTLFLDEIGELPL 331 (550)
T ss_pred cccccchhccCcceeecCCCeEechhhccCCH
Confidence 1111 124678999999998853
No 317
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.95 E-value=0.0042 Score=63.15 Aligned_cols=63 Identities=21% Similarity=0.295 Sum_probs=44.5
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh-----CCcEEEEecCCc----------------------CCchHHHHHHHhcCCCc
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL-----HFDVYDLELSSV----------------------EGNKHLRKVLIATENKS 281 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l-----~~~~~~l~~~~~----------------------~~~~~l~~~l~~~~~~~ 281 (338)
..+.|.||+|+|||+++..+|..+ +..+..++.... .+...+...+.......
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~D 430 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDYK 430 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccCC
Confidence 446799999999999999998754 234554443221 12345677777777889
Q ss_pred EEEEcCCCcc
Q 035959 282 ILVVGDIDCC 291 (338)
Q Consensus 282 Il~iDeiD~~ 291 (338)
+||||..-..
T Consensus 431 LVLIDTaG~s 440 (559)
T PRK12727 431 LVLIDTAGMG 440 (559)
T ss_pred EEEecCCCcc
Confidence 9999998765
No 318
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.95 E-value=0.0034 Score=57.08 Aligned_cols=34 Identities=32% Similarity=0.572 Sum_probs=25.2
Q ss_pred HHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHh
Q 035959 219 IMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 219 i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l 252 (338)
++.++-+...-+.|+.||||||||++++-+|..+
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~ 161 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLL 161 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHh
Confidence 3444443323457899999999999999999876
No 319
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.95 E-value=0.0033 Score=60.93 Aligned_cols=82 Identities=24% Similarity=0.437 Sum_probs=47.9
Q ss_pred CCccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHhCC----cEEEEecC-C--------------
Q 035959 203 PSTFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYLHF----DVYDLELS-S-------------- 263 (338)
Q Consensus 203 p~~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l~~----~~~~l~~~-~-------------- 263 (338)
+.+++++...+. +.+.+. ..+..+++.||+|+|||+++.++..++.. .++.+.-. +
T Consensus 102 ~~~l~~lg~~~~----l~~~~~-~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~e 176 (343)
T TIGR01420 102 IPTFEELGLPPV----LRELAE-RPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQRE 176 (343)
T ss_pred CCCHHHcCCCHH----HHHHHh-hcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccc
Confidence 446677665542 222222 22344689999999999999999987742 23322110 0
Q ss_pred cC-CchHHHHHHHhc--CCCcEEEEcCCC
Q 035959 264 VE-GNKHLRKVLIAT--ENKSILVVGDID 289 (338)
Q Consensus 264 ~~-~~~~l~~~l~~~--~~~~Il~iDeiD 289 (338)
+. ....+.+.+..+ ..|++|++||+-
T Consensus 177 vg~~~~~~~~~l~~~lr~~pd~i~vgEir 205 (343)
T TIGR01420 177 VGLDTLSFANALRAALREDPDVILIGEMR 205 (343)
T ss_pred cCCCCcCHHHHHHHhhccCCCEEEEeCCC
Confidence 11 011233444332 489999999995
No 320
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.94 E-value=0.0008 Score=57.82 Aligned_cols=28 Identities=25% Similarity=0.494 Sum_probs=25.4
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhCCcEEE
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLHFDVYD 258 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~~~~~~ 258 (338)
+-+.||||||||++++-+|+++|++++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 4578999999999999999999998765
No 321
>PF13479 AAA_24: AAA domain
Probab=96.92 E-value=0.00042 Score=62.47 Aligned_cols=60 Identities=25% Similarity=0.455 Sum_probs=38.1
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecC-------------CcCCchHHHHHHHhc----CCCcEEEEcCCCccC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHFDVYDLELS-------------SVEGNKHLRKVLIAT----ENKSILVVGDIDCCT 292 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~-------------~~~~~~~l~~~l~~~----~~~~Il~iDeiD~~~ 292 (338)
-++||||||+|||+++..+-+-+ +++++.. .+.+-.++...+..+ .....||||-++.+.
T Consensus 5 ~~lIyG~~G~GKTt~a~~~~k~l---~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~~~ 81 (213)
T PF13479_consen 5 KILIYGPPGSGKTTLAASLPKPL---FIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSISWLE 81 (213)
T ss_pred EEEEECCCCCCHHHHHHhCCCeE---EEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHHHHH
Confidence 47999999999999998872111 2222222 111234455555432 477899999998874
No 322
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.92 E-value=0.0027 Score=63.65 Aligned_cols=86 Identities=23% Similarity=0.421 Sum_probs=57.9
Q ss_pred CccccccCChhHHHHHHHHHHhhhcCc-eeeeCCCCCCcHHHHHHHHHHhCCc---EEEE------ecCCcCC---ch--
Q 035959 204 STFDTLAMDTDMKKMIMDDLERAWKRG-YLLFGPPGTGKSSLIAAMANYLHFD---VYDL------ELSSVEG---NK-- 268 (338)
Q Consensus 204 ~~f~~l~~~~~~k~~i~~~l~~~~~~g-~LL~GppGtGKT~l~~aia~~l~~~---~~~l------~~~~~~~---~~-- 268 (338)
-+|+.+++.+...+.+...+..| .| +|+.||.|+|||++.-++-++++.+ +..+ ....+.. +.
T Consensus 235 l~l~~Lg~~~~~~~~~~~~~~~p--~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~~gI~Q~qVN~k~ 312 (500)
T COG2804 235 LDLEKLGMSPFQLARLLRLLNRP--QGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQLPGINQVQVNPKI 312 (500)
T ss_pred CCHHHhCCCHHHHHHHHHHHhCC--CeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeeecCCcceeeccccc
Confidence 37899999999888888888754 56 4789999999999999999888643 2222 2222210 11
Q ss_pred --HHHHHHHhc--CCCcEEEEcCCCcc
Q 035959 269 --HLRKVLIAT--ENKSILVVGDIDCC 291 (338)
Q Consensus 269 --~l~~~l~~~--~~~~Il~iDeiD~~ 291 (338)
+..+.+... ..|+||++.||--.
T Consensus 313 gltfa~~LRa~LRqDPDvImVGEIRD~ 339 (500)
T COG2804 313 GLTFARALRAILRQDPDVIMVGEIRDL 339 (500)
T ss_pred CCCHHHHHHHHhccCCCeEEEeccCCH
Confidence 122222222 37999999999754
No 323
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=96.92 E-value=0.0035 Score=62.24 Aligned_cols=84 Identities=14% Similarity=0.220 Sum_probs=58.9
Q ss_pred ccCChhHHHHHHHHHHh--hhcCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCCchHHHHHHHh-------
Q 035959 209 LAMDTDMKKMIMDDLER--AWKRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEGNKHLRKVLIA------- 276 (338)
Q Consensus 209 l~~~~~~k~~i~~~l~~--~~~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~~~~l~~~l~~------- 276 (338)
+++.....+.+++++.. .....++++|++||||+++++++.... +.+++.++|..+.. ..+...+..
T Consensus 141 lig~s~~~~~~~~~i~~~~~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~-~~~~~~lfg~~~~~~~ 219 (441)
T PRK10365 141 MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNE-SLLESELFGHEKGAFT 219 (441)
T ss_pred eEecCHHHHHHHHHHhhccCCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCH-HHHHHHhcCCCCCCcC
Confidence 34444444555555544 334678999999999999999998765 46899999998653 444444322
Q ss_pred -----------cCCCcEEEEcCCCccCC
Q 035959 277 -----------TENKSILVVGDIDCCTE 293 (338)
Q Consensus 277 -----------~~~~~Il~iDeiD~~~~ 293 (338)
...+..|+|||||.+..
T Consensus 220 ~~~~~~~g~~~~a~~gtl~ldei~~l~~ 247 (441)
T PRK10365 220 GADKRREGRFVEADGGTLFLDEIGDISP 247 (441)
T ss_pred CCCcCCCCceeECCCCEEEEeccccCCH
Confidence 12467899999999965
No 324
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.92 E-value=0.0012 Score=57.44 Aligned_cols=32 Identities=28% Similarity=0.250 Sum_probs=25.1
Q ss_pred eeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecC
Q 035959 231 YLLFGPPGTGKSSLIAAMANYL---HFDVYDLELS 262 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~ 262 (338)
++++||||||||+++..++... |.++.++++.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e 36 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE 36 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 6899999999999998876654 5667666553
No 325
>PRK04296 thymidine kinase; Provisional
Probab=96.92 E-value=0.0029 Score=55.99 Aligned_cols=29 Identities=21% Similarity=0.309 Sum_probs=23.2
Q ss_pred eeeeCCCCCCcHHHHHHHHHHh---CCcEEEE
Q 035959 231 YLLFGPPGTGKSSLIAAMANYL---HFDVYDL 259 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l---~~~~~~l 259 (338)
.+++||||+|||+++..++..+ +..++.+
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 5899999999999888887765 5566655
No 326
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=96.92 E-value=0.0025 Score=71.23 Aligned_cols=59 Identities=19% Similarity=0.173 Sum_probs=43.9
Q ss_pred cccccCCCCCccccccCChhHHHHHHHHHHh--hhcCceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 195 RQSAILDHPSTFDTLAMDTDMKKMIMDDLER--AWKRGYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 195 w~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~--~~~~g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
|..+....+..++.+++.+...+++...+.. ...+-+-++||+|+|||+||+++++.+.
T Consensus 172 ~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~ 232 (1153)
T PLN03210 172 LGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLS 232 (1153)
T ss_pred HHhhccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHh
Confidence 4445555667888888877777777766643 2234567999999999999999998774
No 327
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.92 E-value=0.0015 Score=60.19 Aligned_cols=32 Identities=38% Similarity=0.540 Sum_probs=26.5
Q ss_pred eeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecC
Q 035959 231 YLLFGPPGTGKSSLIAAMANYL---HFDVYDLELS 262 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~ 262 (338)
++|.|+||+|||+++++++..+ +.++..++..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D 36 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTD 36 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccH
Confidence 5799999999999999999988 4666666543
No 328
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.91 E-value=0.0015 Score=48.03 Aligned_cols=29 Identities=31% Similarity=0.387 Sum_probs=23.3
Q ss_pred eeeeCCCCCCcHHHHHHHHHHh-CCcEEEE
Q 035959 231 YLLFGPPGTGKSSLIAAMANYL-HFDVYDL 259 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l-~~~~~~l 259 (338)
+.+.|+||+|||+++++++..+ +.++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i 31 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVL 31 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEE
Confidence 4688999999999999999986 3444444
No 329
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.91 E-value=0.0013 Score=64.32 Aligned_cols=65 Identities=22% Similarity=0.298 Sum_probs=43.9
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCC--------------------chHHHHHHHhc--CCCcEE
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEG--------------------NKHLRKVLIAT--ENKSIL 283 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~--------------------~~~l~~~l~~~--~~~~Il 283 (338)
.-++++||||+|||+|+..+|..+ +.++++++..+-.. +..+..++... .++.+|
T Consensus 83 slvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~~~lV 162 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELKPDLV 162 (372)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcCCcEE
Confidence 346899999999999999988765 35677776543110 11222333222 378999
Q ss_pred EEcCCCccCC
Q 035959 284 VVGDIDCCTE 293 (338)
Q Consensus 284 ~iDeiD~~~~ 293 (338)
+||+|..+..
T Consensus 163 VIDSIq~l~~ 172 (372)
T cd01121 163 IIDSIQTVYS 172 (372)
T ss_pred EEcchHHhhc
Confidence 9999998854
No 330
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.88 E-value=0.0016 Score=63.73 Aligned_cols=23 Identities=35% Similarity=0.638 Sum_probs=21.1
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhC
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~ 253 (338)
.++.||||+|||+|++++++...
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHH
Confidence 68899999999999999999774
No 331
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.87 E-value=0.0016 Score=63.28 Aligned_cols=24 Identities=38% Similarity=0.498 Sum_probs=22.0
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l 252 (338)
.-+++.|.||||||.|+-.++..+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHh
Confidence 457899999999999999999988
No 332
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.87 E-value=0.00076 Score=58.67 Aligned_cols=29 Identities=31% Similarity=0.300 Sum_probs=25.0
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcEE
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVY 257 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~~ 257 (338)
+-++|.|+||+|||+++++++..++..++
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~ 31 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWL 31 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCcc
Confidence 45789999999999999999998876544
No 333
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.87 E-value=0.00095 Score=61.01 Aligned_cols=29 Identities=24% Similarity=0.588 Sum_probs=26.0
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhCCcEEEE
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLHFDVYDL 259 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~~~~~~l 259 (338)
++|.||||+|||++++.+|+.++++.+.+
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g~~~is~ 37 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKENLKHINM 37 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 78999999999999999999998776544
No 334
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.87 E-value=0.0027 Score=57.28 Aligned_cols=65 Identities=18% Similarity=0.249 Sum_probs=40.5
Q ss_pred CceeeeCCCCCCcHHHHHHHHH-----HhCCcE---------EEEecCCcCC-----------c---hHHHHHHHhcCCC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMAN-----YLHFDV---------YDLELSSVEG-----------N---KHLRKVLIATENK 280 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~-----~l~~~~---------~~l~~~~~~~-----------~---~~l~~~l~~~~~~ 280 (338)
+.++|.||.|+|||++++.++. ..|..+ ++-....+.. . ..+..++..+..+
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~~ 109 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATRR 109 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCCC
Confidence 6789999999999999999883 233211 1101111111 1 2233334445689
Q ss_pred cEEEEcCCCccCC
Q 035959 281 SILVVGDIDCCTE 293 (338)
Q Consensus 281 ~Il~iDeiD~~~~ 293 (338)
++++|||+..-.+
T Consensus 110 slvllDE~~~gtd 122 (213)
T cd03281 110 SLVLIDEFGKGTD 122 (213)
T ss_pred cEEEeccccCCCC
Confidence 9999999987664
No 335
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.86 E-value=0.00074 Score=58.61 Aligned_cols=28 Identities=29% Similarity=0.579 Sum_probs=24.7
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhCCcEEEE
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLHFDVYDL 259 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~~~~~~l 259 (338)
++++|.||||||+++..++ .+|++++.+
T Consensus 3 I~ITGTPGvGKTT~~~~L~-~lg~~~i~l 30 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLR-ELGYKVIEL 30 (180)
T ss_pred EEEeCCCCCchHHHHHHHH-HhCCceeeH
Confidence 6799999999999999999 888876655
No 336
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.85 E-value=0.00099 Score=59.77 Aligned_cols=29 Identities=28% Similarity=0.531 Sum_probs=25.7
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhCCcEEEE
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLHFDVYDL 259 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~~~~~~l 259 (338)
+++.||||+|||++++.+|..+|+..+..
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 68999999999999999999998776544
No 337
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.84 E-value=0.00074 Score=54.68 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=20.5
Q ss_pred eeeeCCCCCCcHHHHHHHHHHh
Q 035959 231 YLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l 252 (338)
++|.|+||+|||++++.++..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999996
No 338
>PRK09862 putative ATP-dependent protease; Provisional
Probab=96.82 E-value=0.0012 Score=66.90 Aligned_cols=47 Identities=28% Similarity=0.382 Sum_probs=32.4
Q ss_pred ccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 205 TFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 205 ~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
.|..+.+....++.+.-.+ .....++|.||||+|||++++.++..+.
T Consensus 189 d~~~v~Gq~~~~~al~laa--~~G~~llliG~~GsGKTtLak~L~gllp 235 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEITA--AGGHNLLLIGPPGTGKTMLASRINGLLP 235 (506)
T ss_pred CeEEEECcHHHHhhhheec--cCCcEEEEECCCCCcHHHHHHHHhccCC
Confidence 5666666555444432111 3345689999999999999999998663
No 339
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.81 E-value=0.0016 Score=61.04 Aligned_cols=61 Identities=25% Similarity=0.353 Sum_probs=34.3
Q ss_pred eeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcC----------CchHHHHHHH-----hcCCCcEEEEcCCCcc
Q 035959 231 YLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVE----------GNKHLRKVLI-----ATENKSILVVGDIDCC 291 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~----------~~~~l~~~l~-----~~~~~~Il~iDeiD~~ 291 (338)
++|+|.||+|||++++.++.++ +..+..++...+. .+..++..+. .+.+..|||+|+..-+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCchH
Confidence 6899999999999999999986 5667666643322 1223333222 2256799999998754
No 340
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.81 E-value=0.0047 Score=58.19 Aligned_cols=54 Identities=28% Similarity=0.468 Sum_probs=39.0
Q ss_pred ccccccCCCCCccccccCChhHHHHHHHHHHhhhcCce-eeeCCCCCCcHHHHHHHHHHhCC
Q 035959 194 TRQSAILDHPSTFDTLAMDTDMKKMIMDDLERAWKRGY-LLFGPPGTGKSSLIAAMANYLHF 254 (338)
Q Consensus 194 ~w~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~~~~~g~-LL~GppGtGKT~l~~aia~~l~~ 254 (338)
....+|.+ ..+|+.+..++-+.+ + . ..++|+ |+.||+|+|||+.++||-++++.
T Consensus 97 vlR~Ip~~-i~~~e~LglP~i~~~-~----~-~~~~GLILVTGpTGSGKSTTlAamId~iN~ 151 (353)
T COG2805 97 VLRLIPSK-IPTLEELGLPPIVRE-L----A-ESPRGLILVTGPTGSGKSTTLAAMIDYINK 151 (353)
T ss_pred EEeccCcc-CCCHHHcCCCHHHHH-H----H-hCCCceEEEeCCCCCcHHHHHHHHHHHHhc
Confidence 34455533 448999988875444 2 2 234675 78999999999999999999963
No 341
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.81 E-value=0.0012 Score=59.54 Aligned_cols=29 Identities=28% Similarity=0.501 Sum_probs=25.9
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhCCcEEEE
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLHFDVYDL 259 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~~~~~~l 259 (338)
++++||||+|||++++.+|..+++..+.+
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 78999999999999999999999776554
No 342
>PTZ00202 tuzin; Provisional
Probab=96.78 E-value=0.0041 Score=61.77 Aligned_cols=62 Identities=19% Similarity=0.206 Sum_probs=48.3
Q ss_pred CCCccccccCChhHHHHHHHHHHh---hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCC
Q 035959 202 HPSTFDTLAMDTDMKKMIMDDLER---AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSS 263 (338)
Q Consensus 202 ~p~~f~~l~~~~~~k~~i~~~l~~---~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~ 263 (338)
-|.....+++.+....++...+.. ..++-..|.||+|||||++++.++..++...+.+|...
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg 321 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRG 321 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCC
Confidence 344566778888777777776654 22345689999999999999999999998888888773
No 343
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.77 E-value=0.0034 Score=60.19 Aligned_cols=65 Identities=14% Similarity=0.160 Sum_probs=41.7
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCC---------------------chHHHHHHH---hcCCCc
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEG---------------------NKHLRKVLI---ATENKS 281 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~---------------------~~~l~~~l~---~~~~~~ 281 (338)
+-++++||||||||+|+..++... +..+.+++.....+ .++....+. +.....
T Consensus 56 ~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~~~ 135 (321)
T TIGR02012 56 RIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVD 135 (321)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccCCc
Confidence 346899999999999977766544 55666665543111 111111111 224688
Q ss_pred EEEEcCCCccCC
Q 035959 282 ILVVGDIDCCTE 293 (338)
Q Consensus 282 Il~iDeiD~~~~ 293 (338)
+||||-|.++.+
T Consensus 136 lIVIDSv~al~~ 147 (321)
T TIGR02012 136 IIVVDSVAALVP 147 (321)
T ss_pred EEEEcchhhhcc
Confidence 999999999875
No 344
>PRK04182 cytidylate kinase; Provisional
Probab=96.76 E-value=0.0013 Score=56.73 Aligned_cols=29 Identities=28% Similarity=0.520 Sum_probs=26.6
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhCCcEEEE
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLHFDVYDL 259 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~~~~~~l 259 (338)
+.|.|+||+|||++++++|..+|+++++.
T Consensus 3 I~i~G~~GsGKstia~~la~~lg~~~id~ 31 (180)
T PRK04182 3 ITISGPPGSGKTTVARLLAEKLGLKHVSA 31 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEecH
Confidence 67999999999999999999999988763
No 345
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.75 E-value=0.001 Score=64.92 Aligned_cols=36 Identities=36% Similarity=0.653 Sum_probs=27.0
Q ss_pred HHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHhCC
Q 035959 219 IMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYLHF 254 (338)
Q Consensus 219 i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l~~ 254 (338)
+++.+....+..+++.||.|||||++++++...+..
T Consensus 13 v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 13 VIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred HHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 333343344566789999999999999999988843
No 346
>PRK14527 adenylate kinase; Provisional
Probab=96.75 E-value=0.001 Score=58.77 Aligned_cols=29 Identities=28% Similarity=0.568 Sum_probs=25.2
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcEE
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVY 257 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~~ 257 (338)
.-+++.||||+|||++++.+|+.++...+
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~~~~~i 35 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQELGLKKL 35 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCCC
Confidence 45789999999999999999999886544
No 347
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.73 E-value=0.001 Score=57.11 Aligned_cols=26 Identities=38% Similarity=0.626 Sum_probs=20.4
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhCCcEE
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLHFDVY 257 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~~~~~ 257 (338)
+.|.|+||||||+|++++++. |++++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 579999999999999999999 76654
No 348
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.72 E-value=0.0015 Score=55.99 Aligned_cols=29 Identities=28% Similarity=0.589 Sum_probs=26.3
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhCCcEEEE
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLHFDVYDL 259 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~~~~~~l 259 (338)
+.+.|++|+|||++++.+|+.++++++..
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 57999999999999999999999887765
No 349
>PLN02200 adenylate kinase family protein
Probab=96.72 E-value=0.0015 Score=59.86 Aligned_cols=28 Identities=21% Similarity=0.396 Sum_probs=24.7
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcE
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDV 256 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~ 256 (338)
.-+++.||||+|||++++.+|..+|+..
T Consensus 44 ~ii~I~G~PGSGKsT~a~~La~~~g~~h 71 (234)
T PLN02200 44 FITFVLGGPGSGKGTQCEKIVETFGFKH 71 (234)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 3568999999999999999999998754
No 350
>PRK06696 uridine kinase; Validated
Probab=96.71 E-value=0.0051 Score=55.76 Aligned_cols=36 Identities=14% Similarity=0.200 Sum_probs=28.9
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVE 265 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~ 265 (338)
-+.+.|++|+|||++++.++..+ |.+++.+.+.+..
T Consensus 24 iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 24 RVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 35699999999999999999998 6667766655443
No 351
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.70 E-value=0.0013 Score=59.30 Aligned_cols=22 Identities=36% Similarity=0.628 Sum_probs=19.8
Q ss_pred eeeeCCCCCCcHHHHHHHHHHh
Q 035959 231 YLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l 252 (338)
++++|+||+|||++++.++...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999883
No 352
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.69 E-value=0.0016 Score=57.15 Aligned_cols=26 Identities=42% Similarity=0.767 Sum_probs=22.9
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCCc
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHFD 255 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~~ 255 (338)
.+++.||||+||||+|+.+|+.++.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~ 27 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLP 27 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 37899999999999999999996544
No 353
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.69 E-value=0.002 Score=54.70 Aligned_cols=31 Identities=35% Similarity=0.446 Sum_probs=26.4
Q ss_pred eeeeCCCCCCcHHHHHHHHHHh---CCcEEEEec
Q 035959 231 YLLFGPPGTGKSSLIAAMANYL---HFDVYDLEL 261 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~ 261 (338)
+++.|+||+|||+++++++..+ +..++.++.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~ 35 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDG 35 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 5789999999999999999998 666666654
No 354
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.69 E-value=0.006 Score=54.93 Aligned_cols=34 Identities=24% Similarity=0.211 Sum_probs=26.7
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh---C------CcEEEEecCC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL---H------FDVYDLELSS 263 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l---~------~~~~~l~~~~ 263 (338)
-+.|+||||+|||+++..+|... + ..+++++...
T Consensus 21 v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 21 ITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred EEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 36899999999999999988654 2 5667777654
No 355
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.69 E-value=0.0075 Score=59.32 Aligned_cols=64 Identities=17% Similarity=0.219 Sum_probs=42.3
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcC----------------------CchHHHHHHHhcC---CC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVE----------------------GNKHLRKVLIATE---NK 280 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~----------------------~~~~l~~~l~~~~---~~ 280 (338)
+-++|.||+|+|||+++..+|..+ +..+..+++.... +...+.+.+..+. ..
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~ 321 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV 321 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCC
Confidence 457899999999999999999877 4455555543321 1234445554443 35
Q ss_pred cEEEEcCCCccC
Q 035959 281 SILVVGDIDCCT 292 (338)
Q Consensus 281 ~Il~iDeiD~~~ 292 (338)
++||||-.-...
T Consensus 322 DvVLIDTaGRs~ 333 (436)
T PRK11889 322 DYILIDTAGKNY 333 (436)
T ss_pred CEEEEeCccccC
Confidence 888888665543
No 356
>PRK04040 adenylate kinase; Provisional
Probab=96.68 E-value=0.0016 Score=57.66 Aligned_cols=33 Identities=18% Similarity=0.516 Sum_probs=26.4
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh--CCcEEEEecCC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL--HFDVYDLELSS 263 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l--~~~~~~l~~~~ 263 (338)
.-++++|+||+|||++++.++..+ ++.+ ++..+
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~--~~~g~ 37 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKI--VNFGD 37 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCeE--Eecch
Confidence 347899999999999999999999 5554 44444
No 357
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.67 E-value=0.0011 Score=56.16 Aligned_cols=26 Identities=27% Similarity=0.548 Sum_probs=22.5
Q ss_pred eeCCCCCCcHHHHHHHHHHhCCcEEE
Q 035959 233 LFGPPGTGKSSLIAAMANYLHFDVYD 258 (338)
Q Consensus 233 L~GppGtGKT~l~~aia~~l~~~~~~ 258 (338)
+.||||+|||++++.+|..+|+..+.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is 26 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHIS 26 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceec
Confidence 57999999999999999999875443
No 358
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=96.67 E-value=0.0029 Score=56.12 Aligned_cols=66 Identities=21% Similarity=0.245 Sum_probs=32.6
Q ss_pred eeeeCCCCCCcHHHHHHH-HHHh---CCcEEEEecCCcC-----C--c------------------hHHHHHHHhcCCCc
Q 035959 231 YLLFGPPGTGKSSLIAAM-ANYL---HFDVYDLELSSVE-----G--N------------------KHLRKVLIATENKS 281 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~ai-a~~l---~~~~~~l~~~~~~-----~--~------------------~~l~~~l~~~~~~~ 281 (338)
++++|.||+|||..+... .... |.+++. +...+. . . .+-.......+..+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 578999999999987665 4332 455443 433222 0 0 00111222233789
Q ss_pred EEEEcCCCccCCcccccc
Q 035959 282 ILVVGDIDCCTELQDRSA 299 (338)
Q Consensus 282 Il~iDeiD~~~~~~~r~~ 299 (338)
||||||++...+ .|..
T Consensus 82 liviDEa~~~~~--~r~~ 97 (193)
T PF05707_consen 82 LIVIDEAQNFFP--SRSW 97 (193)
T ss_dssp EEEETTGGGTSB-----T
T ss_pred EEEEECChhhcC--CCcc
Confidence 999999999988 5544
No 359
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.66 E-value=0.003 Score=56.51 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=21.8
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
-++|.|+||+|||++++.+|+.+.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHH
Confidence 368999999999999999999984
No 360
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.65 E-value=0.0053 Score=60.70 Aligned_cols=64 Identities=19% Similarity=0.357 Sum_probs=44.1
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcC-CchHHH---HHHHhcC--CCcEEEEcCCCccCC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVE-GNKHLR---KVLIATE--NKSILVVGDIDCCTE 293 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~-~~~~l~---~~l~~~~--~~~Il~iDeiD~~~~ 293 (338)
-++++||.+||||++++-+...+.-.++.++..++. ...++. +.+.... .+..+|||||++.-+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l~d~~~~~~~~~~~~~~yifLDEIq~v~~ 108 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIELLDLLRAYIELKEREKSYIFLDEIQNVPD 108 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhHHHHHHHHHHhhccCCceEEEecccCchh
Confidence 678999999999999988888776555555555444 333332 2222222 458999999999864
No 361
>PF06431 Polyoma_lg_T_C: Polyomavirus large T antigen C-terminus; InterPro: IPR010932 The group of polyomaviruses is formed by the homonymous murine virus (Py) as well as other representative members such as the simian virus 40 (SV40) and the human BK and JC viruses []. Their large T antigen (T-ag) protein binds to and activates DNA replication from the origin of DNA replication (ori). Insofar as is known, the T-ag binds to the origin first as a monomer to its pentanucleotide recognition element. The monomers are then thought to assemble into hexamers and double hexamers, which constitute the form that is active in initiation of DNA replication. When bound to the ori, T-ag double hexamers encircle DNA []. T-ag is a multidomain protein that contains an N-terminal J domain, which mediates protein interactions (see PDOC00553 from PROSITEDOC, IPR001623 from INTERPRO), a central origin-binding domain (OBD), and a C-terminal superfamily 3 helicase domain (see PDOC51206 from PROSITEDOC, IPR010932 from INTERPRO) []. This entry represents the helicase domain of LTag, which assembles into a hexameric structure containing a positively charged central channel that can bind both single- and double-stranded DNA []. ATP binding and hydrolysis trigger large conformational changes which are thought to be coupled to the melting of origin DNA and the unwinding of duplex DNA []. These conformational changes cause the angles and orientations between regions of a monomer to alter, creating what was described as an "iris"-like motion in the hexamer. In addition to this, six beta hairpins on the channel surface move longitudinally along the central channel, possibly serving as a motor for pulling DNA into the LTag double hexamer for unwinding.; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 2H1L_H 1SVO_A 1SVM_E 1SVL_B 1N25_A 4E2I_K.
Probab=96.65 E-value=0.003 Score=60.91 Aligned_cols=71 Identities=23% Similarity=0.257 Sum_probs=45.6
Q ss_pred HHHHHHHHh--hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCCchHHHHHHHhcCCCcEEEEcCCCcc
Q 035959 217 KMIMDDLER--AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKVLIATENKSILVVGDIDCC 291 (338)
Q Consensus 217 ~~i~~~l~~--~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~~~~l~~~l~~~~~~~Il~iDeiD~~ 291 (338)
-++++.+.. |.+|.+|+-||-.||||++|+|+-+.+|-....|++.. +.|.--|.-+-..=.+++||+---
T Consensus 142 ~~iL~~lv~N~PKkRy~lFkGPvNsGKTTlAAAlLdL~gG~~LNvN~p~----dkl~FELG~AiDQfmVvFEDVKGq 214 (417)
T PF06431_consen 142 LEILKCLVENIPKKRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPP----DKLNFELGCAIDQFMVVFEDVKGQ 214 (417)
T ss_dssp HHHHHHHHHTBTTB-EEEEE-STTSSHHHHHHHHHHHH-EEEE-TSS-T----TTHHHHHCCCTT-SEEEEEEE--S
T ss_pred HHHHHHHhcCCCcceeEEEecCcCCchHHHHHHHHHhcCCceeecCCCh----hhcchhhheeeceEEEEEEecCCC
Confidence 344444444 77789999999999999999999999998888887754 233333333346678888888654
No 362
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.65 E-value=0.0078 Score=57.74 Aligned_cols=65 Identities=23% Similarity=0.381 Sum_probs=40.9
Q ss_pred hcCceeeeCCCCCCcHHHHHHHHHHh-----CCcEEEEec-CCcC------------CchHHHHHHHhc--CCCcEEEEc
Q 035959 227 WKRGYLLFGPPGTGKSSLIAAMANYL-----HFDVYDLEL-SSVE------------GNKHLRKVLIAT--ENKSILVVG 286 (338)
Q Consensus 227 ~~~g~LL~GppGtGKT~l~~aia~~l-----~~~~~~l~~-~~~~------------~~~~l~~~l~~~--~~~~Il~iD 286 (338)
.+..+++.|++|+|||+++.|++.+. ...++.++- .++. ..-.+.+++..+ -.|+.|++.
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivG 226 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVG 226 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 35779999999999999999999874 122222211 1110 012344444443 378999999
Q ss_pred CCCcc
Q 035959 287 DIDCC 291 (338)
Q Consensus 287 eiD~~ 291 (338)
||-.-
T Consensus 227 EiR~~ 231 (319)
T PRK13894 227 EVRGP 231 (319)
T ss_pred ccCCH
Confidence 98753
No 363
>PLN02199 shikimate kinase
Probab=96.65 E-value=0.0031 Score=59.63 Aligned_cols=34 Identities=26% Similarity=0.480 Sum_probs=31.2
Q ss_pred cCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEec
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLEL 261 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~ 261 (338)
.+.++|.|.+|+|||++++.+|+.+|+++++.|.
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~ 135 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDT 135 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHH
Confidence 5689999999999999999999999999988764
No 364
>PRK01184 hypothetical protein; Provisional
Probab=96.64 E-value=0.0018 Score=56.67 Aligned_cols=29 Identities=24% Similarity=0.332 Sum_probs=24.3
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCCcEEEE
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHFDVYDL 259 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~~~~~l 259 (338)
-++|.||||+|||+++. ++..+|++++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 36799999999999876 788899887654
No 365
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.63 E-value=0.0041 Score=61.18 Aligned_cols=24 Identities=29% Similarity=0.549 Sum_probs=21.7
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
-+++.||||+|||+|++++++.+.
T Consensus 170 ~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 170 RGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred EEEEECCCCCChhHHHHHHHHhhc
Confidence 379999999999999999999864
No 366
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.61 E-value=0.0018 Score=61.04 Aligned_cols=29 Identities=28% Similarity=0.265 Sum_probs=24.3
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh-CCcEE
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL-HFDVY 257 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l-~~~~~ 257 (338)
.-+++.||||||||++++.++..+ +..++
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l 32 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNV 32 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEE
Confidence 457899999999999999999998 55443
No 367
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.61 E-value=0.0063 Score=58.42 Aligned_cols=62 Identities=19% Similarity=0.335 Sum_probs=40.0
Q ss_pred cCceeeeCCCCCCcHHHHHHHHHHhC-----CcEEEEecC-CcC------------CchHHHHHHHhc--CCCcEEEEcC
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMANYLH-----FDVYDLELS-SVE------------GNKHLRKVLIAT--ENKSILVVGD 287 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia~~l~-----~~~~~l~~~-~~~------------~~~~l~~~l~~~--~~~~Il~iDe 287 (338)
+.++++.|++|+|||+++.|++.++. ..++.++-. ++. ..-.+.+++..+ ..|+.|++-|
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGE 223 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGE 223 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEee
Confidence 56799999999999999999998762 233333211 111 011344444433 3789999988
Q ss_pred CC
Q 035959 288 ID 289 (338)
Q Consensus 288 iD 289 (338)
|-
T Consensus 224 iR 225 (323)
T PRK13833 224 VR 225 (323)
T ss_pred cC
Confidence 84
No 368
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.58 E-value=0.0052 Score=61.42 Aligned_cols=65 Identities=17% Similarity=0.257 Sum_probs=43.5
Q ss_pred cCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCC--c------------------------hHHHHHHHhcC
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEG--N------------------------KHLRKVLIATE 278 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~--~------------------------~~l~~~l~~~~ 278 (338)
+.-++++|+||+|||+++..+|..+ |..+..+++..... . ..+.+.+....
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~~ 174 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKFK 174 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHhh
Confidence 3457899999999999999999877 55666665543221 0 11234444444
Q ss_pred CCcEEEEcCCCccC
Q 035959 279 NKSILVVGDIDCCT 292 (338)
Q Consensus 279 ~~~Il~iDeiD~~~ 292 (338)
...+|+||..-...
T Consensus 175 ~~DvVIIDTAGr~~ 188 (437)
T PRK00771 175 KADVIIVDTAGRHA 188 (437)
T ss_pred cCCEEEEECCCccc
Confidence 56889998886553
No 369
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.58 E-value=0.007 Score=49.95 Aligned_cols=64 Identities=23% Similarity=0.301 Sum_probs=42.5
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCC--------------------cEEEEecCCcCCchHHHHH--HHhcCCCcEEEEcC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHF--------------------DVYDLELSSVEGNKHLRKV--LIATENKSILVVGD 287 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~--------------------~~~~l~~~~~~~~~~l~~~--l~~~~~~~Il~iDe 287 (338)
-++|.|+=|+|||++++++|..+|. +++-+|+-.+.+..++..+ +.......|.+||=
T Consensus 17 vi~L~GdLGaGKTtf~r~l~~~lg~~~~V~SPTF~l~~~Y~~~~~~l~H~DLYRl~~~~e~~~~g~~e~~~~~~i~~IEW 96 (123)
T PF02367_consen 17 VILLSGDLGAGKTTFVRGLARALGIDEEVTSPTFSLVNEYEGGNIPLYHFDLYRLEDPEELEDLGLEEYLFEDGICVIEW 96 (123)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTT--S----TTTTSEEEEEETTEEEEEEE-TT-SSTHHHHHCTTTTCSSSSEEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCCCcCCCCeEEEEEecCCCceEEEeeccccCCHHHHHHCCchhhhCCCCEEEEEC
Confidence 4689999999999999999999963 3444555555555544332 22334688888876
Q ss_pred CCccCC
Q 035959 288 IDCCTE 293 (338)
Q Consensus 288 iD~~~~ 293 (338)
-+.+..
T Consensus 97 ~e~~~~ 102 (123)
T PF02367_consen 97 PERLKE 102 (123)
T ss_dssp GGGGTT
T ss_pred cccccc
Confidence 655543
No 370
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.56 E-value=0.0018 Score=56.87 Aligned_cols=30 Identities=33% Similarity=0.516 Sum_probs=25.2
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcEEE
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYD 258 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~~~ 258 (338)
..+.|.||+|+|||++++.++..++.++..
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~ 32 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLLV 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEEE
Confidence 357899999999999999999988765443
No 371
>PRK14526 adenylate kinase; Provisional
Probab=96.56 E-value=0.0022 Score=57.88 Aligned_cols=27 Identities=30% Similarity=0.716 Sum_probs=24.0
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhCCcEE
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLHFDVY 257 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~~~~~ 257 (338)
++|.||||+|||++++.+|..++...+
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~i 29 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYHI 29 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 789999999999999999999886543
No 372
>PRK08233 hypothetical protein; Provisional
Probab=96.55 E-value=0.0026 Score=55.00 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=21.1
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhC
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~ 253 (338)
+.+.|+||+|||+++..++..++
T Consensus 6 I~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 6 ITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred EEEECCCCCCHHHHHHHHHhhCC
Confidence 56889999999999999999985
No 373
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.0052 Score=58.76 Aligned_cols=39 Identities=21% Similarity=0.389 Sum_probs=35.1
Q ss_pred hcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcC
Q 035959 227 WKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVE 265 (338)
Q Consensus 227 ~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~ 265 (338)
.|.++|+.||+|+|||-+++-+|+..+.|++.+..+...
T Consensus 49 ~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfT 87 (444)
T COG1220 49 TPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFT 87 (444)
T ss_pred CccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeeee
Confidence 367899999999999999999999999999999887644
No 374
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.54 E-value=0.0052 Score=58.97 Aligned_cols=64 Identities=13% Similarity=0.137 Sum_probs=42.4
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcC---------------------CchHHHHHHH---hcCCCcE
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVE---------------------GNKHLRKVLI---ATENKSI 282 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~---------------------~~~~l~~~l~---~~~~~~I 282 (338)
-+.++||||||||+|+..++... +..+.+++...-. +.+++..++. ......+
T Consensus 57 iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~~l 136 (325)
T cd00983 57 IIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAVDL 136 (325)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCCCE
Confidence 36899999999999998877544 5667777664311 1111222222 2246899
Q ss_pred EEEcCCCccCC
Q 035959 283 LVVGDIDCCTE 293 (338)
Q Consensus 283 l~iDeiD~~~~ 293 (338)
||||-|-++.+
T Consensus 137 IVIDSvaal~~ 147 (325)
T cd00983 137 IVVDSVAALVP 147 (325)
T ss_pred EEEcchHhhcc
Confidence 99999999875
No 375
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.52 E-value=0.011 Score=62.83 Aligned_cols=79 Identities=16% Similarity=0.258 Sum_probs=47.1
Q ss_pred CChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHh---C--CcEEEEecCCcC----------CchHHHHHHH
Q 035959 211 MDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYL---H--FDVYDLELSSVE----------GNKHLRKVLI 275 (338)
Q Consensus 211 ~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l---~--~~~~~l~~~~~~----------~~~~l~~~l~ 275 (338)
..+..++.+...+. .+-.+|.|+||||||++++++...+ + ..++.+-.+.-. ....+.+++.
T Consensus 324 l~~~Q~~Ai~~~~~---~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~ 400 (720)
T TIGR01448 324 LSEEQKQALDTAIQ---HKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLG 400 (720)
T ss_pred CCHHHHHHHHHHHh---CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhh
Confidence 45555554444332 3467899999999999999987765 3 344433322110 1123444443
Q ss_pred hc------------CCCcEEEEcCCCccC
Q 035959 276 AT------------ENKSILVVGDIDCCT 292 (338)
Q Consensus 276 ~~------------~~~~Il~iDeiD~~~ 292 (338)
.. ....+|||||+..+.
T Consensus 401 ~~~~~~~~~~~~~~~~~~llIvDEaSMvd 429 (720)
T TIGR01448 401 YGPDTFRHNHLEDPIDCDLLIVDESSMMD 429 (720)
T ss_pred ccCCccchhhhhccccCCEEEEeccccCC
Confidence 21 246899999998774
No 376
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.50 E-value=0.0053 Score=55.13 Aligned_cols=33 Identities=27% Similarity=0.423 Sum_probs=27.0
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELS 262 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~ 262 (338)
-++++||||+|||+++..+|... +.++.+++..
T Consensus 21 i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 21 VTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 37899999999999999988765 5677777654
No 377
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=96.49 E-value=0.0037 Score=53.44 Aligned_cols=44 Identities=23% Similarity=0.343 Sum_probs=33.2
Q ss_pred cCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCCchHHHHH
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKV 273 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~~~~l~~~ 273 (338)
+..+++.|+.|+|||+++++++.+++.++++ ..++.+.++..++
T Consensus 12 k~~i~vmGvsGsGKSTigk~L~~~l~~~F~d--gDd~Hp~~NveKM 55 (191)
T KOG3354|consen 12 KYVIVVMGVSGSGKSTIGKALSEELGLKFID--GDDLHPPANVEKM 55 (191)
T ss_pred ceeEEEEecCCCChhhHHHHHHHHhCCcccc--cccCCCHHHHHHH
Confidence 4567899999999999999999999988754 4455544444333
No 378
>PRK10436 hypothetical protein; Provisional
Probab=96.48 E-value=0.016 Score=58.30 Aligned_cols=86 Identities=23% Similarity=0.432 Sum_probs=55.1
Q ss_pred CccccccCChhHHHHHHHHHHhhhcCc-eeeeCCCCCCcHHHHHHHHHHhCC---cEEEEe------cCCcC-----C--
Q 035959 204 STFDTLAMDTDMKKMIMDDLERAWKRG-YLLFGPPGTGKSSLIAAMANYLHF---DVYDLE------LSSVE-----G-- 266 (338)
Q Consensus 204 ~~f~~l~~~~~~k~~i~~~l~~~~~~g-~LL~GppGtGKT~l~~aia~~l~~---~~~~l~------~~~~~-----~-- 266 (338)
.+++++++.+...+.+.+.+.. +.| +|+.||+|+|||+++.|+..+++. .++.++ +..+. .
T Consensus 195 ~~L~~LG~~~~~~~~l~~~~~~--~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~l~gi~Q~~v~~~~ 272 (462)
T PRK10436 195 LDLETLGMTPAQLAQFRQALQQ--PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPLAGINQTQIHPKA 272 (462)
T ss_pred CCHHHcCcCHHHHHHHHHHHHh--cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccccCCCcceEeeCCcc
Confidence 4789999988766666655543 345 689999999999999888777742 233332 11111 0
Q ss_pred chHHHHHHHhc--CCCcEEEEcCCCcc
Q 035959 267 NKHLRKVLIAT--ENKSILVVGDIDCC 291 (338)
Q Consensus 267 ~~~l~~~l~~~--~~~~Il~iDeiD~~ 291 (338)
.......+... ..|++|+|.||-..
T Consensus 273 g~~f~~~lr~~LR~dPDvI~vGEIRD~ 299 (462)
T PRK10436 273 GLTFQRVLRALLRQDPDVIMVGEIRDG 299 (462)
T ss_pred CcCHHHHHHHHhcCCCCEEEECCCCCH
Confidence 11233444333 37999999998754
No 379
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.45 E-value=0.011 Score=50.33 Aligned_cols=65 Identities=22% Similarity=0.305 Sum_probs=40.7
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCc--EEEEecCCc-----------------CCchHHHHHHH---hcCCCcEEEEc
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFD--VYDLELSSV-----------------EGNKHLRKVLI---ATENKSILVVG 286 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~--~~~l~~~~~-----------------~~~~~l~~~l~---~~~~~~Il~iD 286 (338)
.-+.|.||+|+|||+|+++++..+... -+.++...+ .+..+.+++.. -+.++.++++|
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~ilD 105 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLLLLD 105 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 457899999999999999999876422 112221111 11122222211 12478999999
Q ss_pred CCCccCC
Q 035959 287 DIDCCTE 293 (338)
Q Consensus 287 eiD~~~~ 293 (338)
|...-.+
T Consensus 106 Ep~~~lD 112 (157)
T cd00267 106 EPTSGLD 112 (157)
T ss_pred CCCcCCC
Confidence 9998776
No 380
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.45 E-value=0.015 Score=59.09 Aligned_cols=87 Identities=23% Similarity=0.364 Sum_probs=55.8
Q ss_pred CCccccccCChhHHHHHHHHHHhhhcCc-eeeeCCCCCCcHHHHHHHHHHhC---CcEEEEec------CCcC-----C-
Q 035959 203 PSTFDTLAMDTDMKKMIMDDLERAWKRG-YLLFGPPGTGKSSLIAAMANYLH---FDVYDLEL------SSVE-----G- 266 (338)
Q Consensus 203 p~~f~~l~~~~~~k~~i~~~l~~~~~~g-~LL~GppGtGKT~l~~aia~~l~---~~~~~l~~------~~~~-----~- 266 (338)
+.+++++.+.++..+.+...+.. +.| +++.||+|+|||+++.++.+++. ..++.++- ..+. .
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~~--~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~~~~~~q~~v~~~ 295 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIRR--PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQIEGIGQIQVNPK 295 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhc--CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeeecCCCceEEEccc
Confidence 45788999888877766665542 355 58999999999999998887774 23333321 1111 0
Q ss_pred -chHHHHHHHhc--CCCcEEEEcCCCcc
Q 035959 267 -NKHLRKVLIAT--ENKSILVVGDIDCC 291 (338)
Q Consensus 267 -~~~l~~~l~~~--~~~~Il~iDeiD~~ 291 (338)
.......+..+ ..|++|++.||-.-
T Consensus 296 ~g~~f~~~lr~~LR~dPDvI~vGEiRd~ 323 (486)
T TIGR02533 296 IGLTFAAGLRAILRQDPDIIMVGEIRDL 323 (486)
T ss_pred cCccHHHHHHHHHhcCCCEEEEeCCCCH
Confidence 01222333322 37999999998754
No 381
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.45 E-value=0.0081 Score=59.63 Aligned_cols=117 Identities=20% Similarity=0.230 Sum_probs=67.7
Q ss_pred ccccCChhHHHHHHHHHHh----hhcCceeeeCCCCCCcHHHHHHHHHHhC-----CcEEEEecCCcCCchHH-------
Q 035959 207 DTLAMDTDMKKMIMDDLER----AWKRGYLLFGPPGTGKSSLIAAMANYLH-----FDVYDLELSSVEGNKHL------- 270 (338)
Q Consensus 207 ~~l~~~~~~k~~i~~~l~~----~~~~g~LL~GppGtGKT~l~~aia~~l~-----~~~~~l~~~~~~~~~~l------- 270 (338)
.++.+.+.....+.+.+.. ...+.+++.|-||||||-+..-+-..+. ...++++|.++.....+
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~ 229 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSS 229 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHH
Confidence 3455555555555444444 3446689999999999998876655542 35588999886642111
Q ss_pred --------------HHHHHh-c---CCCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhc
Q 035959 271 --------------RKVLIA-T---ENKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTD 326 (338)
Q Consensus 271 --------------~~~l~~-~---~~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iD 326 (338)
.+.|.. . ...-++++||+|.+.. |+...-..--....-..++..|-|+-|.+|
T Consensus 230 ~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~t---r~~~vLy~lFewp~lp~sr~iLiGiANslD 300 (529)
T KOG2227|consen 230 LLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLIT---RSQTVLYTLFEWPKLPNSRIILIGIANSLD 300 (529)
T ss_pred HHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhh---cccceeeeehhcccCCcceeeeeeehhhhh
Confidence 111111 1 2367999999999985 221110000011123455677777777776
No 382
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.43 E-value=0.013 Score=57.50 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=27.2
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSS 263 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~ 263 (338)
+-++|.||+|+|||+++..+|..+ +..+..+++..
T Consensus 207 ~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDt 244 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDT 244 (407)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCc
Confidence 446899999999999999999876 45565565544
No 383
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=96.43 E-value=0.017 Score=59.76 Aligned_cols=87 Identities=23% Similarity=0.447 Sum_probs=55.8
Q ss_pred CccccccCChhHHHHHHHHHHhhhcCc-eeeeCCCCCCcHHHHHHHHHHhCC---cEEEEe------cCCcC-----C--
Q 035959 204 STFDTLAMDTDMKKMIMDDLERAWKRG-YLLFGPPGTGKSSLIAAMANYLHF---DVYDLE------LSSVE-----G-- 266 (338)
Q Consensus 204 ~~f~~l~~~~~~k~~i~~~l~~~~~~g-~LL~GppGtGKT~l~~aia~~l~~---~~~~l~------~~~~~-----~-- 266 (338)
.+++++++.++..+.+.+.+.. +.| +|+.||+|+|||+++.++.++++. .++.++ +..+. .
T Consensus 293 ~~l~~lg~~~~~~~~l~~~~~~--~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~~~~~~q~~v~~~~ 370 (564)
T TIGR02538 293 LDIDKLGFEPDQKALFLEAIHK--PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINLPGINQVNVNPKI 370 (564)
T ss_pred CCHHHcCCCHHHHHHHHHHHHh--cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceecCCCceEEEecccc
Confidence 4788999988877777655543 345 589999999999999888888742 233221 11111 0
Q ss_pred chHHHHHHHhc--CCCcEEEEcCCCccC
Q 035959 267 NKHLRKVLIAT--ENKSILVVGDIDCCT 292 (338)
Q Consensus 267 ~~~l~~~l~~~--~~~~Il~iDeiD~~~ 292 (338)
.......+... ..|++|++.||..--
T Consensus 371 g~~~~~~l~~~LR~dPDvI~vGEiRd~e 398 (564)
T TIGR02538 371 GLTFAAALRSFLRQDPDIIMVGEIRDLE 398 (564)
T ss_pred CCCHHHHHHHHhccCCCEEEeCCCCCHH
Confidence 11233333333 379999999997543
No 384
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.42 E-value=0.0055 Score=51.70 Aligned_cols=65 Identities=22% Similarity=0.258 Sum_probs=40.5
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCc---EE-----EEecCCcCCchHHHHHHH---hcCCCcEEEEcCCCccCC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFD---VY-----DLELSSVEGNKHLRKVLI---ATENKSILVVGDIDCCTE 293 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~---~~-----~l~~~~~~~~~~l~~~l~---~~~~~~Il~iDeiD~~~~ 293 (338)
..+.+.||+|+|||+|+++++...... ++ .+....-.+....+++.. -+.++.++++||-..-.+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~~~rv~laral~~~p~illlDEP~~~LD 102 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLD 102 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCC
Confidence 457899999999999999999876321 10 111100022333333322 124899999999887765
No 385
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.42 E-value=0.011 Score=51.90 Aligned_cols=63 Identities=17% Similarity=0.220 Sum_probs=40.2
Q ss_pred eeeeCCCCCCcHHHHHHHHH-----HhCCcE--------------EEEecCCcCC---------chHHHHHHHhcCCCcE
Q 035959 231 YLLFGPPGTGKSSLIAAMAN-----YLHFDV--------------YDLELSSVEG---------NKHLRKVLIATENKSI 282 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~-----~l~~~~--------------~~l~~~~~~~---------~~~l~~~l~~~~~~~I 282 (338)
++|+||.|.|||++++.++- +.|..+ ..+...+-.. -.++..++..+..+++
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~l 81 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENSL 81 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCeE
Confidence 68999999999999999883 233211 1111111110 1234455566668999
Q ss_pred EEEcCCCccCC
Q 035959 283 LVVGDIDCCTE 293 (338)
Q Consensus 283 l~iDeiD~~~~ 293 (338)
+++||.-.-.+
T Consensus 82 lllDEp~~g~d 92 (185)
T smart00534 82 VLLDELGRGTS 92 (185)
T ss_pred EEEecCCCCCC
Confidence 99999987665
No 386
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.40 E-value=0.0094 Score=53.85 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=25.9
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh----CCcEEEEecCC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL----HFDVYDLELSS 263 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l----~~~~~~l~~~~ 263 (338)
.-+|+.||||||||.++..++... |.+++++...+
T Consensus 20 s~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee 58 (226)
T PF06745_consen 20 SVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEE 58 (226)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecC
Confidence 457999999999999988766433 78888887654
No 387
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.40 E-value=0.0026 Score=55.30 Aligned_cols=22 Identities=36% Similarity=0.789 Sum_probs=19.9
Q ss_pred eeeeCCCCCCcHHHHHHHHHHh
Q 035959 231 YLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l 252 (338)
++|+|+||+||||+++.++..+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7899999999999999999988
No 388
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.37 E-value=0.0072 Score=58.98 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=21.1
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhC
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~ 253 (338)
.++.||||||||+|++.+++.+.
T Consensus 136 ~LIvG~pGtGKTTLl~~la~~i~ 158 (380)
T PRK12608 136 GLIVAPPRAGKTVLLQQIAAAVA 158 (380)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 69999999999999999998773
No 389
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.37 E-value=0.015 Score=52.53 Aligned_cols=34 Identities=24% Similarity=0.101 Sum_probs=26.4
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELS 262 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~ 262 (338)
..+++.||||+|||+++..++... +..+..+++.
T Consensus 21 ~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e 57 (229)
T TIGR03881 21 FFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTE 57 (229)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 457899999999999998876533 5667777764
No 390
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.014 Score=62.66 Aligned_cols=88 Identities=20% Similarity=0.402 Sum_probs=67.6
Q ss_pred cccccCC-hhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHh----------CCcEEEEecCCcCC--------
Q 035959 206 FDTLAMD-TDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYL----------HFDVYDLELSSVEG-------- 266 (338)
Q Consensus 206 f~~l~~~-~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l----------~~~~~~l~~~~~~~-------- 266 (338)
++.+++. ++.-+++++-|.+..+++-+|.|.||+|||.++.-+|+.. +..++.+++..+..
T Consensus 185 ldPvigr~deeirRvi~iL~Rrtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~ 264 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSRKTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEF 264 (898)
T ss_pred CCCccCCchHHHHHHHHHHhccCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHH
Confidence 4556665 5666778888888777899999999999999999999877 24567777765543
Q ss_pred chHHHHHHHh---cCCCcEEEEcCCCccCC
Q 035959 267 NKHLRKVLIA---TENKSILVVGDIDCCTE 293 (338)
Q Consensus 267 ~~~l~~~l~~---~~~~~Il~iDeiD~~~~ 293 (338)
+..+..++.. .....||+|||++++..
T Consensus 265 E~rlk~l~k~v~~~~~gvILfigelh~lvg 294 (898)
T KOG1051|consen 265 EERLKELLKEVESGGGGVILFLGELHWLVG 294 (898)
T ss_pred HHHHHHHHHHHhcCCCcEEEEecceeeeec
Confidence 3456666665 34789999999999987
No 391
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.36 E-value=0.0034 Score=56.04 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=24.6
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcE
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDV 256 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~ 256 (338)
.-+++.|+||+|||++++.+|..++...
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 4578999999999999999999988653
No 392
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.36 E-value=0.012 Score=60.73 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=22.2
Q ss_pred cCceeeeCCCCCCcHHHHHHHHHHh
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia~~l 252 (338)
...+|+.||+|||||+|.+|+|.-.
T Consensus 419 G~~llI~G~SG~GKTsLlRaiaGLW 443 (604)
T COG4178 419 GERLLITGESGAGKTSLLRALAGLW 443 (604)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 4558999999999999999999855
No 393
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.36 E-value=0.0047 Score=53.08 Aligned_cols=36 Identities=31% Similarity=0.429 Sum_probs=30.4
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVE 265 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~ 265 (338)
-+.|.|.||+|||++++++...+ +.+++.++...+.
T Consensus 4 vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR 42 (156)
T PF01583_consen 4 VIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLR 42 (156)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchh
Confidence 36799999999999999999988 7889999877655
No 394
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.35 E-value=0.0062 Score=63.80 Aligned_cols=51 Identities=27% Similarity=0.436 Sum_probs=34.0
Q ss_pred cCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecC
Q 035959 210 AMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELS 262 (338)
Q Consensus 210 ~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~ 262 (338)
..++..++.+...+.. ...++++||||||||+++.++...+ |..+..+..+
T Consensus 157 ~ln~~Q~~Av~~~l~~--~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~s 210 (637)
T TIGR00376 157 NLNESQKEAVSFALSS--KDLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPS 210 (637)
T ss_pred CCCHHHHHHHHHHhcC--CCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCc
Confidence 3455555555443321 2457899999999999998887765 5666655433
No 395
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.35 E-value=0.01 Score=63.36 Aligned_cols=64 Identities=23% Similarity=0.345 Sum_probs=41.5
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCC----------chHHHHHHHh-------cCCCcEEEEcCC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEG----------NKHLRKVLIA-------TENKSILVVGDI 288 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~----------~~~l~~~l~~-------~~~~~Il~iDei 288 (338)
+-++|.|+||||||+++.++...+ |+.+..+-.+.... ...+.+++.. .....+|||||+
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llIvDEa 448 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLVIDEA 448 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEEEECc
Confidence 456899999999999999987654 66666554333210 1123333221 235789999998
Q ss_pred CccC
Q 035959 289 DCCT 292 (338)
Q Consensus 289 D~~~ 292 (338)
-.+.
T Consensus 449 sMv~ 452 (744)
T TIGR02768 449 GMVG 452 (744)
T ss_pred ccCC
Confidence 7654
No 396
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.34 E-value=0.0029 Score=54.93 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=22.2
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHF 254 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~ 254 (338)
-+++.||||+|||+++++++..++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 4689999999999999999998753
No 397
>PRK14529 adenylate kinase; Provisional
Probab=96.33 E-value=0.0028 Score=57.70 Aligned_cols=27 Identities=30% Similarity=0.502 Sum_probs=24.6
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhCCcEE
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLHFDVY 257 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~~~~~ 257 (338)
++|.||||+|||++++.+|..++...+
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~i 29 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHI 29 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCc
Confidence 789999999999999999999987654
No 398
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.31 E-value=0.012 Score=52.32 Aligned_cols=65 Identities=17% Similarity=0.237 Sum_probs=40.8
Q ss_pred CceeeeCCCCCCcHHHHHHHHHH-----hCCc--------------EEEEecCCcCC---------chHHHHHHHhcCCC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANY-----LHFD--------------VYDLELSSVEG---------NKHLRKVLIATENK 280 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~-----l~~~--------------~~~l~~~~~~~---------~~~l~~~l~~~~~~ 280 (338)
+-++|.||.|+|||++++.++.- .|.. +..+...+... ...+..++.....+
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~~~l~~i~~~~~~~ 109 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRIGAEDSISDGRSTFMAELLELKEILSLATPR 109 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEEecCcccccCCceeHHHHHHHHHHHHHhccCC
Confidence 45899999999999999999932 2311 11111111000 12344455555689
Q ss_pred cEEEEcCCCccCC
Q 035959 281 SILVVGDIDCCTE 293 (338)
Q Consensus 281 ~Il~iDeiD~~~~ 293 (338)
.++++||.-.-.+
T Consensus 110 ~llllDEp~~gld 122 (202)
T cd03243 110 SLVLIDELGRGTS 122 (202)
T ss_pred eEEEEecCCCCCC
Confidence 9999999977665
No 399
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.30 E-value=0.009 Score=54.10 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=26.7
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh---------CCcEEEEecCC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL---------HFDVYDLELSS 263 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l---------~~~~~~l~~~~ 263 (338)
-+.|+||||||||+++..+|... +..+++++...
T Consensus 21 i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 21 ITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred EEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 36899999999999999988553 25677777655
No 400
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.29 E-value=0.01 Score=56.53 Aligned_cols=27 Identities=15% Similarity=0.497 Sum_probs=23.8
Q ss_pred hcCceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 227 WKRGYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 227 ~~~g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
.+..+++.||+|+|||+++++++..+.
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCC
Confidence 356789999999999999999998873
No 401
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.28 E-value=0.0069 Score=53.01 Aligned_cols=26 Identities=31% Similarity=0.557 Sum_probs=23.4
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCCc
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHFD 255 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~~ 255 (338)
-+.+.||+|+|||+++++++..++..
T Consensus 5 ~i~l~G~sGsGKSTl~~~la~~l~~~ 30 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIAALFSAK 30 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCE
Confidence 47899999999999999999998764
No 402
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.28 E-value=0.0048 Score=53.54 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=26.3
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhC---CcEEEEec
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLH---FDVYDLEL 261 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~---~~~~~l~~ 261 (338)
.-++|.|+||+|||++++++++.+. ..++.++.
T Consensus 8 ~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~ 43 (176)
T PRK05541 8 YVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDG 43 (176)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEec
Confidence 3468999999999999999999885 33555544
No 403
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.28 E-value=0.0049 Score=53.45 Aligned_cols=33 Identities=27% Similarity=0.375 Sum_probs=26.6
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELS 262 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~ 262 (338)
-+.|.|+||+|||+++++++..+ +..+..++..
T Consensus 6 ~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D 41 (175)
T PRK00889 6 TVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGD 41 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCc
Confidence 46799999999999999999988 4456666553
No 404
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.27 E-value=0.0033 Score=57.79 Aligned_cols=31 Identities=32% Similarity=0.723 Sum_probs=22.9
Q ss_pred eeCCCCCCcHHHHHHHHHHh---CCcEEEEecCC
Q 035959 233 LFGPPGTGKSSLIAAMANYL---HFDVYDLELSS 263 (338)
Q Consensus 233 L~GppGtGKT~l~~aia~~l---~~~~~~l~~~~ 263 (338)
+.||||+|||++++++..++ +.+++.+++..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDP 34 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDP 34 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--T
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcch
Confidence 46999999999999999988 56677776654
No 405
>PRK10646 ADP-binding protein; Provisional
Probab=96.27 E-value=0.038 Score=47.34 Aligned_cols=42 Identities=17% Similarity=0.235 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHhhhcC--ceeeeCCCCCCcHHHHHHHHHHhCC
Q 035959 213 TDMKKMIMDDLERAWKR--GYLLFGPPGTGKSSLIAAMANYLHF 254 (338)
Q Consensus 213 ~~~k~~i~~~l~~~~~~--g~LL~GppGtGKT~l~~aia~~l~~ 254 (338)
++.-+++-+.+....+. -++|.|+=|+|||++++++++.+|.
T Consensus 11 ~~~t~~l~~~la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 11 EQATLDLGARVAKACDGATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 33334444455443333 3789999999999999999999973
No 406
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.26 E-value=0.006 Score=52.72 Aligned_cols=33 Identities=33% Similarity=0.431 Sum_probs=27.0
Q ss_pred eeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCC
Q 035959 231 YLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSS 263 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~ 263 (338)
+++.||||+|||+++..+|..+ +..+..+++..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~ 38 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT 38 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 5789999999999999998876 66777776653
No 407
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.25 E-value=0.0044 Score=54.15 Aligned_cols=29 Identities=31% Similarity=0.406 Sum_probs=25.0
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhCCcEEEEe
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLHFDVYDLE 260 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~~~~~~l~ 260 (338)
+.|+|+||+|||+++..+++ +|++++..|
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D 30 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVIDAD 30 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEecC
Confidence 57899999999999999999 788776554
No 408
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.24 E-value=0.005 Score=44.51 Aligned_cols=22 Identities=45% Similarity=0.791 Sum_probs=19.8
Q ss_pred eeeeCCCCCCcHHHHHHHHHHh
Q 035959 231 YLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l 252 (338)
.+|+||.|+|||+++.|+.-.+
T Consensus 26 tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 26 TLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7999999999999999987654
No 409
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.23 E-value=0.0085 Score=56.15 Aligned_cols=25 Identities=32% Similarity=0.607 Sum_probs=22.8
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
.++++.||||+|||+|+++++..+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 4789999999999999999999874
No 410
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.23 E-value=0.01 Score=52.73 Aligned_cols=21 Identities=24% Similarity=0.506 Sum_probs=19.4
Q ss_pred CceeeeCCCCCCcHHHHHHHH
Q 035959 229 RGYLLFGPPGTGKSSLIAAMA 249 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia 249 (338)
+-++|.||.|+|||++++.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 458999999999999999988
No 411
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.23 E-value=0.0072 Score=60.80 Aligned_cols=64 Identities=23% Similarity=0.277 Sum_probs=42.7
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCC--------------------chHHHHHHHhc--CCCcEEE
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEG--------------------NKHLRKVLIAT--ENKSILV 284 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~--------------------~~~l~~~l~~~--~~~~Il~ 284 (338)
-+++.|+||+|||+|+..+|..+ +.++++++..+-.. +.++..+...+ .++.+|+
T Consensus 96 vilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~~~~~vV 175 (454)
T TIGR00416 96 LILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEENPQACV 175 (454)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhcCCcEEE
Confidence 46899999999999999887755 45677776643210 11222222222 3688999
Q ss_pred EcCCCccCC
Q 035959 285 VGDIDCCTE 293 (338)
Q Consensus 285 iDeiD~~~~ 293 (338)
||.|..+..
T Consensus 176 IDSIq~l~~ 184 (454)
T TIGR00416 176 IDSIQTLYS 184 (454)
T ss_pred Eecchhhcc
Confidence 999998753
No 412
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.23 E-value=0.013 Score=54.93 Aligned_cols=64 Identities=22% Similarity=0.386 Sum_probs=47.1
Q ss_pred cCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC----chHHHHHHHhcC---CCcEEEEcCCCcc
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG----NKHLRKVLIATE---NKSILVVGDIDCC 291 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~----~~~l~~~l~~~~---~~~Il~iDeiD~~ 291 (338)
+...||.|.+|+||.++++..|--.++.++.+..+.--+ .++|+.++..+. ++.+++|+|-+-.
T Consensus 31 ~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~~~~~vfll~d~qi~ 101 (268)
T PF12780_consen 31 RGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYSIKDFKEDLKKALQKAGIKGKPTVFLLTDSQIV 101 (268)
T ss_dssp TEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTHHHHHHHHHHHHHHHHHCS-S-EEEEEECCCSS
T ss_pred CCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcCHHHHHHHHHHHHHHHhccCCCeEEEecCcccc
Confidence 345899999999999999988888899999888765332 245667666553 6788998886644
No 413
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.23 E-value=0.0041 Score=55.29 Aligned_cols=38 Identities=18% Similarity=0.311 Sum_probs=29.3
Q ss_pred cCceeeeCCCCCCcHHHHHHHHHHh-CCcEEEEecCCcC
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMANYL-HFDVYDLELSSVE 265 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia~~l-~~~~~~l~~~~~~ 265 (338)
|.-+++.|+||+|||+++..+...+ +..++.++...+.
T Consensus 15 P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r 53 (199)
T PF06414_consen 15 PTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFR 53 (199)
T ss_dssp -EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGG
T ss_pred CEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHH
Confidence 4668899999999999999999988 7778888777654
No 414
>PLN02674 adenylate kinase
Probab=96.22 E-value=0.0082 Score=55.38 Aligned_cols=29 Identities=24% Similarity=0.510 Sum_probs=25.5
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcEE
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVY 257 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~~ 257 (338)
..++|.||||+||+++++.+|..+++..+
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~~~~hi 60 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEYCLCHL 60 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcEE
Confidence 55899999999999999999999986543
No 415
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.21 E-value=0.023 Score=49.03 Aligned_cols=29 Identities=17% Similarity=0.217 Sum_probs=23.0
Q ss_pred eeeeCCCCCCcHHHHHHHHHHh---CCcEEEE
Q 035959 231 YLLFGPPGTGKSSLIAAMANYL---HFDVYDL 259 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l---~~~~~~l 259 (338)
+.+|+++|+||||+|.++|-.. |..+..+
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~v 36 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALGHGYRVGVV 36 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4689999999999999988655 5666654
No 416
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.21 E-value=0.0048 Score=53.88 Aligned_cols=36 Identities=31% Similarity=0.463 Sum_probs=31.7
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVE 265 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~ 265 (338)
-+.|+|.+|+|||++|.|+...| |+.+|.+|...+.
T Consensus 25 viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR 63 (197)
T COG0529 25 VIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVR 63 (197)
T ss_pred EEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHh
Confidence 45799999999999999999988 8899999887665
No 417
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.20 E-value=0.019 Score=62.18 Aligned_cols=58 Identities=24% Similarity=0.278 Sum_probs=39.4
Q ss_pred CCCCCccccccCChhHHHHHHHHHHhh-hcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecC
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLERA-WKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELS 262 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~~-~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~ 262 (338)
+.+|..-..++..+.+.+ .+... ..+-.++.||+|.|||+++...+...+ ++..+++.
T Consensus 7 ~~~p~~~~~~~~R~rl~~----~l~~~~~~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~ 65 (903)
T PRK04841 7 LSRPVRLHNTVVRERLLA----KLSGANNYRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLD 65 (903)
T ss_pred cCCCCCccccCcchHHHH----HHhcccCCCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecC
Confidence 445555556666665444 44432 234579999999999999999887777 77666664
No 418
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.19 E-value=0.0067 Score=59.12 Aligned_cols=45 Identities=27% Similarity=0.499 Sum_probs=32.7
Q ss_pred CCccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHh
Q 035959 203 PSTFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 203 p~~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l 252 (338)
+.+++++..++.. .+.+. .....+++.||+|+|||+++++++.++
T Consensus 114 ~~~l~~l~~~~~~----~~~~~-~~~glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 114 PPKLSKLDLPAAI----IDAIA-PQEGIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred CCCHHHcCCCHHH----HHHHh-ccCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4478888776543 33332 223447899999999999999999887
No 419
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.19 E-value=0.0088 Score=52.48 Aligned_cols=65 Identities=18% Similarity=0.264 Sum_probs=39.4
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCc--EEEEec-------CCc-CCchHHHHHHH---hcCCCcEEEEcCCCccCC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFD--VYDLEL-------SSV-EGNKHLRKVLI---ATENKSILVVGDIDCCTE 293 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~--~~~l~~-------~~~-~~~~~l~~~l~---~~~~~~Il~iDeiD~~~~ 293 (338)
.-+.|.||.|+|||+|++.++..+..+ -+.++. ... .+...-+++.. -+.++.++++||--.-++
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts~LD 103 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYLD 103 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence 346799999999999999999876321 111111 111 12222222211 124789999999887765
No 420
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=96.18 E-value=0.015 Score=60.21 Aligned_cols=91 Identities=19% Similarity=0.088 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHhh-hcCceeeeCCCCCCcHHHHHHHHHHhCC--cEEEEecCC----cCCchHHHHHHHhc---------
Q 035959 214 DMKKMIMDDLERA-WKRGYLLFGPPGTGKSSLIAAMANYLHF--DVYDLELSS----VEGNKHLRKVLIAT--------- 277 (338)
Q Consensus 214 ~~k~~i~~~l~~~-~~~g~LL~GppGtGKT~l~~aia~~l~~--~~~~l~~~~----~~~~~~l~~~l~~~--------- 277 (338)
..|..+.-....| .-.|++|-|++|||||+++++++..+.. ++..+..+. +...-+|...+..-
T Consensus 10 ~~~~Al~l~av~p~~~gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGll 89 (584)
T PRK13406 10 DAALAAALLAVDPAGLGGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLL 89 (584)
T ss_pred HHHHHHHHhCcCccccceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCce
Confidence 3444444333334 4478999999999999999999998864 555444332 11223344444322
Q ss_pred --CCCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhc
Q 035959 278 --ENKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTD 326 (338)
Q Consensus 278 --~~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iD 326 (338)
..+.||+|||+..+.+ .+++.||..|+
T Consensus 90 a~Ah~GvL~lDe~n~~~~----------------------~~~~aLleame 118 (584)
T PRK13406 90 AEADGGVLVLAMAERLEP----------------------GTAARLAAALD 118 (584)
T ss_pred eeccCCEEEecCcccCCH----------------------HHHHHHHHHHh
Confidence 2468999999998864 67888888876
No 421
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.17 E-value=0.012 Score=53.24 Aligned_cols=62 Identities=19% Similarity=0.271 Sum_probs=38.6
Q ss_pred CceeeeCCCCCCcHHHHHHHHH-----HhCCcE---------EEEecCCcCC-------c-------hHHHHHHHhcCCC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMAN-----YLHFDV---------YDLELSSVEG-------N-------KHLRKVLIATENK 280 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~-----~l~~~~---------~~l~~~~~~~-------~-------~~l~~~l~~~~~~ 280 (338)
+-++|.||+|+|||++.+.++. ..|..+ +.--...+.. . ..+..++....++
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i~~~~~~~~~ls~g~s~f~~e~~~l~~~l~~~~~~ 110 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRIFTRIGASDDLAGGRSTFMVEMVETANILNNATER 110 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceeeEeccCCchhhhccCcchHHHHHHHHHHHHHhCCCC
Confidence 4578999999999999999864 222211 1000111110 0 1355566666789
Q ss_pred cEEEEcCCCc
Q 035959 281 SILVVGDIDC 290 (338)
Q Consensus 281 ~Il~iDeiD~ 290 (338)
++++|||.-.
T Consensus 111 ~llllDEp~~ 120 (216)
T cd03284 111 SLVLLDEIGR 120 (216)
T ss_pred eEEEEecCCC
Confidence 9999999843
No 422
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.15 E-value=0.011 Score=44.85 Aligned_cols=30 Identities=30% Similarity=0.406 Sum_probs=24.7
Q ss_pred eeeeCCCCCCcHHHHHHHHHHh---CCcEEEEe
Q 035959 231 YLLFGPPGTGKSSLIAAMANYL---HFDVYDLE 260 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l---~~~~~~l~ 260 (338)
+++.|.+|+|||+++..+|..+ |+++..++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 4688999999999999999987 56665555
No 423
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.12 E-value=0.045 Score=52.08 Aligned_cols=77 Identities=12% Similarity=0.161 Sum_probs=51.8
Q ss_pred HHHHHHHHHh-hhcCceeeeCCCCCCcHHHHHHHHHHh--------C---C--cEEEEe--cCCcCCchHHHHHHHhcC-
Q 035959 216 KKMIMDDLER-AWKRGYLLFGPPGTGKSSLIAAMANYL--------H---F--DVYDLE--LSSVEGNKHLRKVLIATE- 278 (338)
Q Consensus 216 k~~i~~~l~~-~~~~g~LL~GppGtGKT~l~~aia~~l--------~---~--~~~~l~--~~~~~~~~~l~~~l~~~~- 278 (338)
++.+...+.. ..+..|||+|+.|.||+.++.++++.+ . . ++..++ ... ...++++.+....+
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~-i~vd~Ir~l~~~~~~ 83 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKD-LSKSEFLSAINKLYF 83 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCc-CCHHHHHHHHHHhcc
Confidence 3444445544 345679999999999999999999887 1 1 344444 222 23456666666552
Q ss_pred ------CCcEEEEcCCCccCC
Q 035959 279 ------NKSILVVGDIDCCTE 293 (338)
Q Consensus 279 ------~~~Il~iDeiD~~~~ 293 (338)
.+-|++||++|.+..
T Consensus 84 ~~~~~~~~KvvII~~~e~m~~ 104 (299)
T PRK07132 84 SSFVQSQKKILIIKNIEKTSN 104 (299)
T ss_pred CCcccCCceEEEEecccccCH
Confidence 678999999988853
No 424
>PRK10536 hypothetical protein; Provisional
Probab=96.12 E-value=0.018 Score=53.45 Aligned_cols=38 Identities=24% Similarity=0.291 Sum_probs=27.4
Q ss_pred ChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHH
Q 035959 212 DTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 212 ~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~ 251 (338)
.......++..+.. ..-+++.||+|||||+|+.|+|.+
T Consensus 60 ~n~~Q~~~l~al~~--~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 60 RNEAQAHYLKAIES--KQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CCHHHHHHHHHHhc--CCeEEEECCCCCCHHHHHHHHHHH
Confidence 33444455555543 246789999999999999999985
No 425
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.11 E-value=0.008 Score=53.66 Aligned_cols=32 Identities=16% Similarity=0.172 Sum_probs=24.9
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhC-CcEEEEec
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLH-FDVYDLEL 261 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~-~~~~~l~~ 261 (338)
-+.+.||+|+|||+|+++++..++ ..+..++.
T Consensus 8 iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~ 40 (209)
T PRK05480 8 IIGIAGGSGSGKTTVASTIYEELGDESIAVIPQ 40 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceEEEeC
Confidence 467999999999999999999983 34444443
No 426
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.10 E-value=0.0046 Score=54.41 Aligned_cols=26 Identities=27% Similarity=0.668 Sum_probs=23.0
Q ss_pred cCceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
...+++.||+|+|||+++++++..+.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 45689999999999999999998874
No 427
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.10 E-value=0.0071 Score=56.25 Aligned_cols=34 Identities=21% Similarity=0.125 Sum_probs=26.5
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELS 262 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~ 262 (338)
.-++++||||||||+++..+|... |.++.++++.
T Consensus 37 s~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 37 SVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 446899999999999998876643 5677777665
No 428
>PRK14974 cell division protein FtsY; Provisional
Probab=96.09 E-value=0.017 Score=55.81 Aligned_cols=34 Identities=35% Similarity=0.428 Sum_probs=26.4
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELS 262 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~ 262 (338)
.-++|.||||+|||++++.+|..+ +..+..+++.
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~D 177 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD 177 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 457899999999999999999876 4555555443
No 429
>PRK04328 hypothetical protein; Provisional
Probab=96.09 E-value=0.019 Score=52.99 Aligned_cols=45 Identities=24% Similarity=0.214 Sum_probs=31.5
Q ss_pred CceeeeCCCCCCcHHHHHHHHHH---hCCcEEEEecCCcCCchHHHHHHH
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANY---LHFDVYDLELSSVEGNKHLRKVLI 275 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~---l~~~~~~l~~~~~~~~~~l~~~l~ 275 (338)
..+|++||||||||.|+..++.. -|.+.++++..+ +...+.+-+.
T Consensus 24 s~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee--~~~~i~~~~~ 71 (249)
T PRK04328 24 NVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE--HPVQVRRNMR 71 (249)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC--CHHHHHHHHH
Confidence 45789999999999998876543 267888888765 3333444433
No 430
>PLN02165 adenylate isopentenyltransferase
Probab=96.08 E-value=0.0049 Score=59.23 Aligned_cols=31 Identities=23% Similarity=0.438 Sum_probs=26.5
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcEEEE
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYDL 259 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~~~l 259 (338)
.-+.|.||+|+|||+|+.++|..++..++..
T Consensus 44 ~iivIiGPTGSGKStLA~~LA~~l~~eIIsa 74 (334)
T PLN02165 44 KVVVIMGATGSGKSRLSVDLATRFPSEIINS 74 (334)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHcCCceecC
Confidence 4578999999999999999999998765544
No 431
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.08 E-value=0.039 Score=52.11 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=19.7
Q ss_pred eeeeCCCCCCcHHHHHHHHHHh
Q 035959 231 YLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l 252 (338)
+=|.|+||+|||+|+..+.+.+
T Consensus 107 v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 107 LNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 3488999999999999999876
No 432
>PRK12338 hypothetical protein; Provisional
Probab=96.07 E-value=0.0054 Score=58.64 Aligned_cols=28 Identities=25% Similarity=0.332 Sum_probs=24.8
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcE
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDV 256 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~ 256 (338)
.-+++.|+||+|||++++++|..++...
T Consensus 5 ~ii~i~G~sGsGKST~a~~la~~l~~~~ 32 (319)
T PRK12338 5 YVILIGSASGIGKSTIASELARTLNIKH 32 (319)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCeE
Confidence 4578999999999999999999998654
No 433
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.06 E-value=0.013 Score=55.70 Aligned_cols=34 Identities=18% Similarity=0.208 Sum_probs=27.0
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh---------CCcEEEEecCC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL---------HFDVYDLELSS 263 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l---------~~~~~~l~~~~ 263 (338)
-++++||||+|||+++..+|... +..+++++..+
T Consensus 97 i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 97 ITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 35899999999999999888663 23678887765
No 434
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.06 E-value=0.0086 Score=54.51 Aligned_cols=35 Identities=29% Similarity=0.235 Sum_probs=27.1
Q ss_pred cCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecC
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELS 262 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~ 262 (338)
...++++||||||||+++..++... +..++++++.
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e 62 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE 62 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 3457899999999999999987543 5667666653
No 435
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.05 E-value=0.018 Score=52.45 Aligned_cols=65 Identities=18% Similarity=0.225 Sum_probs=42.1
Q ss_pred CceeeeCCCCCCcHHHHHHHHH-Hh----CCc---------E---EEEecC---CcCC--------chHHHHHHHhcCCC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMAN-YL----HFD---------V---YDLELS---SVEG--------NKHLRKVLIATENK 280 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~-~l----~~~---------~---~~l~~~---~~~~--------~~~l~~~l~~~~~~ 280 (338)
+-++|.||.|+|||++.+.++. .+ |.. + +..... ++.. -.++..++..+.++
T Consensus 32 ~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~~ 111 (222)
T cd03287 32 YCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSNCTSR 111 (222)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHHHHHHHHHHHhCCCC
Confidence 4578999999999999999887 22 211 1 111111 1110 13456777778899
Q ss_pred cEEEEcCCCccCC
Q 035959 281 SILVVGDIDCCTE 293 (338)
Q Consensus 281 ~Il~iDeiD~~~~ 293 (338)
++++|||+..-..
T Consensus 112 sLvllDE~~~gT~ 124 (222)
T cd03287 112 SLVILDELGRGTS 124 (222)
T ss_pred eEEEEccCCCCCC
Confidence 9999999866543
No 436
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.05 E-value=0.012 Score=57.81 Aligned_cols=65 Identities=22% Similarity=0.319 Sum_probs=43.7
Q ss_pred cCceeeeCCCCCCcHHHHHHHHHHhC-----C--cEEEEecCCcC--------------------CchHHHHHHHhcCCC
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMANYLH-----F--DVYDLELSSVE--------------------GNKHLRKVLIATENK 280 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia~~l~-----~--~~~~l~~~~~~--------------------~~~~l~~~l~~~~~~ 280 (338)
++-+.|.||+|+|||+.++-+|..+. . .++.+|.-.+. +..++...+..+...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 45578999999999998888887664 1 23333333332 245566666777778
Q ss_pred cEEEEcCCCccC
Q 035959 281 SILVVGDIDCCT 292 (338)
Q Consensus 281 ~Il~iDeiD~~~ 292 (338)
++|++|=+....
T Consensus 283 d~ILVDTaGrs~ 294 (407)
T COG1419 283 DVILVDTAGRSQ 294 (407)
T ss_pred CEEEEeCCCCCc
Confidence 899888665543
No 437
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.02 E-value=0.0084 Score=55.53 Aligned_cols=36 Identities=25% Similarity=0.249 Sum_probs=29.0
Q ss_pred cCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCC
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSS 263 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~ 263 (338)
.+-+|++|+||||||.++..++... |.+++++...+
T Consensus 23 g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e 61 (260)
T COG0467 23 GSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEE 61 (260)
T ss_pred CcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecC
Confidence 3557999999999999988877654 67788887765
No 438
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=96.01 E-value=0.0051 Score=53.08 Aligned_cols=27 Identities=33% Similarity=0.545 Sum_probs=22.7
Q ss_pred eCCCCCCcHHHHHHHHHHhCCcEEEEe
Q 035959 234 FGPPGTGKSSLIAAMANYLHFDVYDLE 260 (338)
Q Consensus 234 ~GppGtGKT~l~~aia~~l~~~~~~l~ 260 (338)
.||||+|||+++++++..++..+++-+
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d 27 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGD 27 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCc
Confidence 499999999999999999987555444
No 439
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=96.01 E-value=0.0098 Score=58.00 Aligned_cols=33 Identities=30% Similarity=0.559 Sum_probs=28.5
Q ss_pred hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEE
Q 035959 226 AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYD 258 (338)
Q Consensus 226 ~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~ 258 (338)
|.+.++++||||.||||.++..+-..++-.++.
T Consensus 260 PKKnClvi~GPPdTGKS~F~~SLi~Fl~GkViS 292 (432)
T PF00519_consen 260 PKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVIS 292 (432)
T ss_dssp TTSSEEEEESSCCCSHHHHHHHHHHHHTSEEE-
T ss_pred CcccEEEEECCCCCchhHHHHHHHHHhCCEEEE
Confidence 667788999999999999999999999877654
No 440
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=96.00 E-value=0.012 Score=48.60 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=19.1
Q ss_pred eeeeCCCCCCcHHHHHHHHHH
Q 035959 231 YLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~ 251 (338)
+.|.||+|+|||+|+.++...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 578999999999999999875
No 441
>PRK06851 hypothetical protein; Provisional
Probab=95.98 E-value=0.0098 Score=58.03 Aligned_cols=38 Identities=37% Similarity=0.514 Sum_probs=32.2
Q ss_pred hhcCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCC
Q 035959 226 AWKRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSS 263 (338)
Q Consensus 226 ~~~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~ 263 (338)
...+-++|.|+||||||+|+..++..+ |+++....|+.
T Consensus 212 ~~~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~~ 252 (367)
T PRK06851 212 GVKNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCGF 252 (367)
T ss_pred ccceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 445789999999999999999999988 77777777764
No 442
>PLN02459 probable adenylate kinase
Probab=95.98 E-value=0.0071 Score=56.27 Aligned_cols=28 Identities=21% Similarity=0.509 Sum_probs=24.6
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhCCcEEE
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLHFDVYD 258 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~~~~~~ 258 (338)
++|.||||+|||+++..+|..+++..+.
T Consensus 32 ii~~G~PGsGK~T~a~~la~~~~~~~is 59 (261)
T PLN02459 32 WVFLGCPGVGKGTYASRLSKLLGVPHIA 59 (261)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 7789999999999999999999876543
No 443
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.98 E-value=0.0083 Score=52.60 Aligned_cols=32 Identities=25% Similarity=0.462 Sum_probs=25.1
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhC---CcEEEEecC
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLH---FDVYDLELS 262 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~---~~~~~l~~~ 262 (338)
+.+.|+||+|||++++.++..++ .++..++..
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~D 36 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLD 36 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehh
Confidence 46899999999999999999873 455555443
No 444
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=95.98 E-value=0.0068 Score=53.94 Aligned_cols=30 Identities=23% Similarity=0.180 Sum_probs=25.8
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCCcEEEE
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHFDVYDL 259 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~~~~~l 259 (338)
-+.++|++|+|||++++.+++.+|.++++.
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i~~ 32 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPILDA 32 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEeeC
Confidence 367999999999999999999888877644
No 445
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.96 E-value=0.011 Score=54.14 Aligned_cols=36 Identities=28% Similarity=0.253 Sum_probs=27.2
Q ss_pred cCceeeeCCCCCCcHHHHHHHHHH---hCCcEEEEecCC
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMANY---LHFDVYDLELSS 263 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia~~---l~~~~~~l~~~~ 263 (338)
...+|++||||||||.++..++.. -|.+++++.+.+
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 345799999999999998875543 266777777654
No 446
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.95 E-value=0.0048 Score=53.51 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=21.4
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
-++|.||+|+|||++++.+++...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCc
Confidence 468999999999999999999764
No 447
>PRK05973 replicative DNA helicase; Provisional
Probab=95.93 E-value=0.0091 Score=54.84 Aligned_cols=89 Identities=19% Similarity=0.062 Sum_probs=49.0
Q ss_pred hhhHHHHHHhHHHHHhccceeeeeccCcc--CCC-CccccccC--CCCCccccccCChhHHHHHHHHHHhhhcCceeeeC
Q 035959 161 TYIPHILKKSKELSKKKKTLKLFTLNCNR--INH-DTRQSAIL--DHPSTFDTLAMDTDMKKMIMDDLERAWKRGYLLFG 235 (338)
Q Consensus 161 ~~l~~v~~~~~~~~~~~~~~~l~~~~~~~--~~~-~~w~~~~~--~~p~~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~G 235 (338)
..+.++-.+|+.+..+.. +.++..-... .+| ..|..+.. ..+.+.+.+.+.= +...-+++.|
T Consensus 5 ~~~~~~~~~a~~~~~~~~-~~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p~~~l~GGl------------~~Gsl~LIaG 71 (237)
T PRK05973 5 APIYHLKRKAKLLSRAQN-IPLHEALDRIAAEEGFSSWSLLAAKAAATTPAEELFSQL------------KPGDLVLLGA 71 (237)
T ss_pred hHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHhccchHHHHHHhccCCCCHHHhcCCC------------CCCCEEEEEe
Confidence 445566677777764432 2232221000 022 36876543 2233455543211 1123478999
Q ss_pred CCCCCcHHHHHHHHHHh---CCcEEEEecC
Q 035959 236 PPGTGKSSLIAAMANYL---HFDVYDLELS 262 (338)
Q Consensus 236 ppGtGKT~l~~aia~~l---~~~~~~l~~~ 262 (338)
+||+|||+++..++... |.+++++++.
T Consensus 72 ~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 72 RPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 99999999988877654 6666666544
No 448
>PRK06761 hypothetical protein; Provisional
Probab=95.92 E-value=0.0078 Score=56.69 Aligned_cols=31 Identities=23% Similarity=0.365 Sum_probs=25.6
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcEEEE
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYDL 259 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~~~l 259 (338)
+-+++.||||+|||++++.+++.+....+.+
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v 34 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEV 34 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEE
Confidence 3478999999999999999999997544443
No 449
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=95.92 E-value=0.031 Score=61.13 Aligned_cols=63 Identities=17% Similarity=0.322 Sum_probs=41.2
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcC----------CchHHHHHHHh-------cCCCcEEEEcCCC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVE----------GNKHLRKVLIA-------TENKSILVVGDID 289 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~----------~~~~l~~~l~~-------~~~~~Il~iDeiD 289 (338)
-++|.|+||||||+++.++...+ |+.+.-+-.+... ....+..++.. .....+|||||+-
T Consensus 364 v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e~tGi~a~TI~sll~~~~~~~~~l~~~~vlIVDEAS 443 (988)
T PRK13889 364 LGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGGSGIASRTIASLEHGWGQGRDLLTSRDVLVIDEAG 443 (988)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhhccCcchhhHHHHHhhhcccccccccCcEEEEECcc
Confidence 46799999999999988876544 6666655443221 11234444422 2356899999998
Q ss_pred ccC
Q 035959 290 CCT 292 (338)
Q Consensus 290 ~~~ 292 (338)
.+.
T Consensus 444 Mv~ 446 (988)
T PRK13889 444 MVG 446 (988)
T ss_pred cCC
Confidence 764
No 450
>PRK09354 recA recombinase A; Provisional
Probab=95.91 E-value=0.015 Score=56.45 Aligned_cols=64 Identities=11% Similarity=0.160 Sum_probs=41.2
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCC---------------------chHHHHHH---HhcCCCcE
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEG---------------------NKHLRKVL---IATENKSI 282 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~---------------------~~~l~~~l---~~~~~~~I 282 (338)
-++++||||||||+|+..++... |..+.+++...-.+ .++...++ .+.....+
T Consensus 62 IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~~l 141 (349)
T PRK09354 62 IVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAVDL 141 (349)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCCCE
Confidence 36899999999999988766543 55666666544111 11111111 12246889
Q ss_pred EEEcCCCccCC
Q 035959 283 LVVGDIDCCTE 293 (338)
Q Consensus 283 l~iDeiD~~~~ 293 (338)
||||-|-++.+
T Consensus 142 IVIDSvaaL~~ 152 (349)
T PRK09354 142 IVVDSVAALVP 152 (349)
T ss_pred EEEeChhhhcc
Confidence 99999998875
No 451
>PRK13808 adenylate kinase; Provisional
Probab=95.90 E-value=0.0072 Score=58.18 Aligned_cols=29 Identities=24% Similarity=0.490 Sum_probs=25.8
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhCCcEEEE
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLHFDVYDL 259 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~~~~~~l 259 (338)
++|+||||+|||+++..||..+++..+.+
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~is~ 31 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQLST 31 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceecc
Confidence 78999999999999999999998866554
No 452
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=95.90 E-value=0.019 Score=48.58 Aligned_cols=22 Identities=18% Similarity=0.501 Sum_probs=19.2
Q ss_pred ceeeeCCCCCCcHHHHHHHHHH
Q 035959 230 GYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~ 251 (338)
.+++.|++|+|||+|+..+...
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~ 22 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTL 22 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhh
Confidence 3689999999999999998754
No 453
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.90 E-value=0.0065 Score=54.11 Aligned_cols=23 Identities=48% Similarity=0.901 Sum_probs=21.0
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhC
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~ 253 (338)
+++.||+|+|||+++.+++.++.
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 58999999999999999998874
No 454
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.89 E-value=0.011 Score=52.27 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=20.2
Q ss_pred eeeeCCCCCCcHHHHHHHHHHh
Q 035959 231 YLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l 252 (338)
+.|.||+|+|||+++++++..+
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999987
No 455
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=95.87 E-value=0.0066 Score=62.59 Aligned_cols=84 Identities=24% Similarity=0.330 Sum_probs=50.9
Q ss_pred cCChhHHHHHHHHHHh-------h---hc--CceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCC-------cC-CchH
Q 035959 210 AMDTDMKKMIMDDLER-------A---WK--RGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSS-------VE-GNKH 269 (338)
Q Consensus 210 ~~~~~~k~~i~~~l~~-------~---~~--~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~-------~~-~~~~ 269 (338)
...++.|+.++-.|-. . .+ -++||+|.||||||.|++.+++-+..-+|.---.+ .. -+.+
T Consensus 432 ye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVtrd~d 511 (804)
T KOG0478|consen 432 YELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVTKDPD 511 (804)
T ss_pred hcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEEecCc
Confidence 3445566666555543 1 11 24899999999999999999988754433221110 00 0112
Q ss_pred HHHHHHhc-----CCCcEEEEcCCCccCC
Q 035959 270 LRKVLIAT-----ENKSILVVGDIDCCTE 293 (338)
Q Consensus 270 l~~~l~~~-----~~~~Il~iDeiD~~~~ 293 (338)
-++++.+. +...|-+|||+|.+..
T Consensus 512 tkqlVLesGALVLSD~GiCCIDEFDKM~d 540 (804)
T KOG0478|consen 512 TRQLVLESGALVLSDNGICCIDEFDKMSD 540 (804)
T ss_pred cceeeeecCcEEEcCCceEEchhhhhhhH
Confidence 23333333 4688999999999954
No 456
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=95.84 E-value=0.0089 Score=54.16 Aligned_cols=29 Identities=34% Similarity=0.506 Sum_probs=25.3
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCCcEEE
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHFDVYD 258 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~~~~~ 258 (338)
-+.+.||+|+|||++++.+|..+++.++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~~~~~~~ 32 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKLGYAYLD 32 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 35689999999999999999999977654
No 457
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.83 E-value=0.0055 Score=54.65 Aligned_cols=35 Identities=31% Similarity=0.419 Sum_probs=25.8
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSS 263 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~ 263 (338)
+-++|.||+|+|||+.+.-+|.++ +..+-.+.+..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~ 39 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADT 39 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEEST
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCC
Confidence 457899999999999999999877 45555554443
No 458
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.83 E-value=0.0082 Score=50.25 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=21.2
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhCC
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLHF 254 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~~ 254 (338)
+.|.||+|+|||++++.++..+..
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~ 25 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDP 25 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCc
Confidence 578999999999999999998643
No 459
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.81 E-value=0.011 Score=51.46 Aligned_cols=30 Identities=30% Similarity=0.461 Sum_probs=25.1
Q ss_pred eeeeCCCCCCcHHHHHHHHHHh---CCcEEEEe
Q 035959 231 YLLFGPPGTGKSSLIAAMANYL---HFDVYDLE 260 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l---~~~~~~l~ 260 (338)
+.|.|++|+|||++++.+++.+ |+.+..+.
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~ 35 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERLEARGYEVVLTR 35 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 5688999999999999999998 66665553
No 460
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.77 E-value=0.017 Score=51.82 Aligned_cols=65 Identities=20% Similarity=0.253 Sum_probs=39.5
Q ss_pred CceeeeCCCCCCcHHHHHHHHH-----HhCCcE------------E--EEecCC-cCC--------chHHHHHHHhcCCC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMAN-----YLHFDV------------Y--DLELSS-VEG--------NKHLRKVLIATENK 280 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~-----~l~~~~------------~--~l~~~~-~~~--------~~~l~~~l~~~~~~ 280 (338)
+-++|.||.|+|||++++.++. ++|..+ + .+...+ +.. -.++..++..+.++
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il~~~~~~ 109 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYILDYADGD 109 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeEecCCccccchhhhHHHHHHHHHHHHHHhcCCC
Confidence 4589999999999999999873 333221 0 011110 100 11334445555689
Q ss_pred cEEEEcCCCccCC
Q 035959 281 SILVVGDIDCCTE 293 (338)
Q Consensus 281 ~Il~iDeiD~~~~ 293 (338)
+++++||+..-.+
T Consensus 110 ~lvllDE~~~gt~ 122 (204)
T cd03282 110 SLVLIDELGRGTS 122 (204)
T ss_pred cEEEeccccCCCC
Confidence 9999999866543
No 461
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=95.77 E-value=0.01 Score=52.66 Aligned_cols=30 Identities=33% Similarity=0.325 Sum_probs=25.6
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCCcEEEEe
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHFDVYDLE 260 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~~~~~l~ 260 (338)
-+.|+|++|+|||+++..+++ +|+++++.|
T Consensus 4 ~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D 33 (194)
T PRK00081 4 IIGLTGGIGSGKSTVANLFAE-LGAPVIDAD 33 (194)
T ss_pred EEEEECCCCCCHHHHHHHHHH-cCCEEEEec
Confidence 478999999999999999998 888776554
No 462
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.75 E-value=0.0079 Score=53.77 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=20.9
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhC
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~ 253 (338)
+.+.||+|+|||||+++++..++
T Consensus 9 i~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 9 IGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 45999999999999999999875
No 463
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.75 E-value=0.0081 Score=53.29 Aligned_cols=25 Identities=36% Similarity=0.477 Sum_probs=22.4
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
.-+.|.||+|+|||+|++.++..+.
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4578999999999999999999875
No 464
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.74 E-value=0.0082 Score=48.01 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=19.6
Q ss_pred eeeeCCCCCCcHHHHHHHHHHh
Q 035959 231 YLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l 252 (338)
+++.|++|+|||+|++.++...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 6789999999999999999654
No 465
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.74 E-value=0.0077 Score=53.22 Aligned_cols=25 Identities=24% Similarity=0.406 Sum_probs=22.0
Q ss_pred cCceeeeCCCCCCcHHHHHHHHHHh
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia~~l 252 (338)
++-++|.||+|+|||+|++.+.+..
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 3557899999999999999998875
No 466
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.73 E-value=0.042 Score=58.33 Aligned_cols=63 Identities=24% Similarity=0.305 Sum_probs=42.9
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh----C-CcEEEEecCCcC----------------------CchHHHHHHHhcCCCcE
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL----H-FDVYDLELSSVE----------------------GNKHLRKVLIATENKSI 282 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l----~-~~~~~l~~~~~~----------------------~~~~l~~~l~~~~~~~I 282 (338)
-++|.||+|+|||+++..||..+ | ..+..+...... +..++.+.+.......+
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D~ 266 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKHL 266 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCCE
Confidence 46899999999999999999765 2 244444332211 23456666777777788
Q ss_pred EEEcCCCccC
Q 035959 283 LVVGDIDCCT 292 (338)
Q Consensus 283 l~iDeiD~~~ 292 (338)
||||=.-...
T Consensus 267 VLIDTAGRs~ 276 (767)
T PRK14723 267 VLIDTVGMSQ 276 (767)
T ss_pred EEEeCCCCCc
Confidence 9888666543
No 467
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.73 E-value=0.021 Score=54.59 Aligned_cols=34 Identities=15% Similarity=0.204 Sum_probs=26.8
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh---------CCcEEEEecCC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL---------HFDVYDLELSS 263 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l---------~~~~~~l~~~~ 263 (338)
-++++||||+|||.++..+|... +..+++++..+
T Consensus 104 vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 104 ITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred EEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 35799999999999999988653 23677777655
No 468
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=95.73 E-value=0.0093 Score=61.34 Aligned_cols=33 Identities=18% Similarity=0.341 Sum_probs=30.3
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcEEEEec
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYDLEL 261 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~ 261 (338)
..++|.|.||+|||++.+.+|+.++++++++|-
T Consensus 7 ~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~ 39 (542)
T PRK14021 7 PQAVIIGMMGAGKTRVGKEVAQMMRLPFADADV 39 (542)
T ss_pred ccEEEECCCCCCHHHHHHHHHHHhCCCEEEchH
Confidence 357899999999999999999999999998874
No 469
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=95.72 E-value=0.074 Score=45.22 Aligned_cols=38 Identities=29% Similarity=0.347 Sum_probs=28.0
Q ss_pred HHHHHHHHHhhh--cCceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 216 KKMIMDDLERAW--KRGYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 216 k~~i~~~l~~~~--~~g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
..++-+.+.... ..-++|.|+=|.|||+++++++..++
T Consensus 11 t~~lg~~l~~~l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg 50 (149)
T COG0802 11 TLALGERLAEALKAGDVVLLSGDLGAGKTTLVRGIAKGLG 50 (149)
T ss_pred HHHHHHHHHhhCCCCCEEEEEcCCcCChHHHHHHHHHHcC
Confidence 344444444433 23468999999999999999999986
No 470
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.72 E-value=0.0097 Score=52.72 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.7
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhC
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~ 253 (338)
+.+.|+||+|||++++.++..++
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~ 24 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILP 24 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 46789999999999999999983
No 471
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=95.71 E-value=0.01 Score=56.70 Aligned_cols=31 Identities=23% Similarity=0.464 Sum_probs=26.1
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcEEEE
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYDL 259 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~~~l 259 (338)
.-+++.||+|+|||+++..+|..++..++..
T Consensus 5 ~~i~i~GptgsGKt~la~~la~~~~~~iis~ 35 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELAKRLNGEIISA 35 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhCCCcEEec
Confidence 4578999999999999999999987655444
No 472
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=95.71 E-value=0.036 Score=50.83 Aligned_cols=65 Identities=23% Similarity=0.361 Sum_probs=41.8
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh-----CC------------cE--EEEecC-CcCC--------chHHHHHHHhcCCC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL-----HF------------DV--YDLELS-SVEG--------NKHLRKVLIATENK 280 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l-----~~------------~~--~~l~~~-~~~~--------~~~l~~~l~~~~~~ 280 (338)
+.++|+||...|||++++.+|-.. |. +- ..+... ++.. -.++..++....++
T Consensus 44 ~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~~~i~~~d~I~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~~ 123 (235)
T PF00488_consen 44 RIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAESAEIPIFDRIFTRIGDDDSIESGLSTFMAEMKRLSSILRNATEK 123 (235)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSEEEEE--SEEEEEES---SSTTSSSHHHHHHHHHHHHHHH--TT
T ss_pred eEEEEeCCCccchhhHHHHHHHHhhhhhcCceeeecccccccccEEEeecccccccccccccHHHhHHHHHhhhhhcccc
Confidence 568999999999999999987533 32 11 111111 1111 13566778888899
Q ss_pred cEEEEcCCCccCC
Q 035959 281 SILVVGDIDCCTE 293 (338)
Q Consensus 281 ~Il~iDeiD~~~~ 293 (338)
++|+|||+-.-..
T Consensus 124 sLvliDE~g~gT~ 136 (235)
T PF00488_consen 124 SLVLIDELGRGTN 136 (235)
T ss_dssp EEEEEESTTTTSS
T ss_pred eeeecccccCCCC
Confidence 9999999987655
No 473
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.70 E-value=0.015 Score=53.08 Aligned_cols=33 Identities=27% Similarity=0.233 Sum_probs=23.8
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEec
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLEL 261 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~ 261 (338)
.-+++.||||||||+++..++..+ |..+.+++.
T Consensus 25 ~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~ 60 (230)
T PRK08533 25 SLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVST 60 (230)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 457999999999999975554433 556666654
No 474
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=95.70 E-value=0.044 Score=50.96 Aligned_cols=66 Identities=12% Similarity=0.091 Sum_probs=44.7
Q ss_pred cCceeeeCCCCCCcHHHHHHHHHHhC----------------------CcEEEEecCC-cCCchHHHHHHHhc---C---
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMANYLH----------------------FDVYDLELSS-VEGNKHLRKVLIAT---E--- 278 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia~~l~----------------------~~~~~l~~~~-~~~~~~l~~~l~~~---~--- 278 (338)
+..+||+||+|+||..+|.++|..+- .+++.+.... ....++++++.... +
T Consensus 7 ~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e~ 86 (261)
T PRK05818 7 THPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVES 86 (261)
T ss_pred CcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchhc
Confidence 47899999999999999999998761 2344442221 12234455554433 1
Q ss_pred -CCcEEEEcCCCccCC
Q 035959 279 -NKSILVVGDIDCCTE 293 (338)
Q Consensus 279 -~~~Il~iDeiD~~~~ 293 (338)
..-|++|+++|.+..
T Consensus 87 ~~~KV~II~~ae~m~~ 102 (261)
T PRK05818 87 NGKKIYIIYGIEKLNK 102 (261)
T ss_pred CCCEEEEeccHhhhCH
Confidence 368999999999864
No 475
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.68 E-value=0.026 Score=55.96 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=25.9
Q ss_pred eeeeCCCCCCcHHHHHHHHHHh----CCcEEEEecCC
Q 035959 231 YLLFGPPGTGKSSLIAAMANYL----HFDVYDLELSS 263 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l----~~~~~~l~~~~ 263 (338)
+++.||+|+|||+++..+|..+ |..+..+++..
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt 262 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDN 262 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccc
Confidence 6799999999999999999754 45566665544
No 476
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=95.68 E-value=0.012 Score=55.64 Aligned_cols=30 Identities=27% Similarity=0.576 Sum_probs=25.6
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhCCcEEEEe
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLHFDVYDLE 260 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~~~~~~l~ 260 (338)
+++.||+|+|||+++..+|..++..++.+|
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~~iis~D 31 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVD 31 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEEec
Confidence 578999999999999999999886665553
No 477
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=95.68 E-value=0.013 Score=60.47 Aligned_cols=34 Identities=29% Similarity=0.283 Sum_probs=27.1
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhCC----cEEEEecCCc
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLHF----DVYDLELSSV 264 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~~----~~~~l~~~~~ 264 (338)
++|.|+||+|||++++++|..++. +++.++...+
T Consensus 395 Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~v 432 (568)
T PRK05537 395 VFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVV 432 (568)
T ss_pred EEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHH
Confidence 578899999999999999999875 4566655443
No 478
>PRK07667 uridine kinase; Provisional
Probab=95.68 E-value=0.024 Score=50.14 Aligned_cols=33 Identities=12% Similarity=0.254 Sum_probs=25.8
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhC---CcEEEEecCC
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLH---FDVYDLELSS 263 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~---~~~~~l~~~~ 263 (338)
+.+.|+||+|||+++..++..++ .++..++..+
T Consensus 20 IgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd 55 (193)
T PRK07667 20 LGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDD 55 (193)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence 46899999999999999999873 4555555544
No 479
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.67 E-value=0.029 Score=56.93 Aligned_cols=47 Identities=17% Similarity=0.148 Sum_probs=33.5
Q ss_pred cCceeeeCCCCCCcHHHHHHHHHH----hCCcEEEEecCCcCCchHHHHHHHh
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMANY----LHFDVYDLELSSVEGNKHLRKVLIA 276 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia~~----l~~~~~~l~~~~~~~~~~l~~~l~~ 276 (338)
.+.+|+.||||||||+++..++.. .|.+.+++.+.+ +..++.+-...
T Consensus 21 g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE--~~~~l~~~~~~ 71 (484)
T TIGR02655 21 GRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE--SPQDIIKNARS 71 (484)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec--CHHHHHHHHHH
Confidence 466899999999999999987543 267888888753 34444444433
No 480
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.67 E-value=0.014 Score=52.99 Aligned_cols=34 Identities=18% Similarity=0.227 Sum_probs=27.2
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh----CCcEEEEecCC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL----HFDVYDLELSS 263 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l----~~~~~~l~~~~ 263 (338)
-++|.|+||+|||+++..+|... +.+++++++..
T Consensus 15 l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~ 52 (242)
T cd00984 15 LIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM 52 (242)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC
Confidence 46899999999999988877654 77888877543
No 481
>COG1485 Predicted ATPase [General function prediction only]
Probab=95.66 E-value=0.029 Score=54.04 Aligned_cols=27 Identities=33% Similarity=0.468 Sum_probs=23.9
Q ss_pred cCceeeeCCCCCCcHHHHHHHHHHhCC
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMANYLHF 254 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia~~l~~ 254 (338)
++|++|||+-|.|||+|.......+..
T Consensus 65 ~~GlYl~GgVGrGKT~LMD~Fy~~lp~ 91 (367)
T COG1485 65 VRGLYLWGGVGRGKTMLMDLFYESLPG 91 (367)
T ss_pred CceEEEECCCCccHHHHHHHHHhhCCc
Confidence 589999999999999999998877743
No 482
>PRK13975 thymidylate kinase; Provisional
Probab=95.66 E-value=0.0092 Score=52.46 Aligned_cols=27 Identities=22% Similarity=0.175 Sum_probs=23.9
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCCcE
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHFDV 256 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~~~ 256 (338)
-+.+.|++|+|||++++.+|..++...
T Consensus 4 ~I~ieG~~GsGKtT~~~~L~~~l~~~~ 30 (196)
T PRK13975 4 FIVFEGIDGSGKTTQAKLLAEKLNAFW 30 (196)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 467999999999999999999998643
No 483
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.66 E-value=0.0078 Score=53.25 Aligned_cols=23 Identities=35% Similarity=0.631 Sum_probs=21.1
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhC
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~ 253 (338)
+-+.||+|+|||+++++++..++
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999996
No 484
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=95.64 E-value=0.01 Score=60.23 Aligned_cols=32 Identities=25% Similarity=0.435 Sum_probs=28.6
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCCcEEEEec
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHFDVYDLEL 261 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~ 261 (338)
.+.|.|+||+|||++++.+|..+++++++.|.
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~ 33 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDE 33 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEEECcH
Confidence 37899999999999999999999999887753
No 485
>PRK06851 hypothetical protein; Provisional
Probab=95.64 E-value=0.015 Score=56.70 Aligned_cols=32 Identities=41% Similarity=0.649 Sum_probs=26.2
Q ss_pred cCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEE
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDL 259 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l 259 (338)
.+-++|.|+||||||++++.++..+ |+++-.+
T Consensus 30 ~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~ 64 (367)
T PRK06851 30 NRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFL 64 (367)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 4678999999999999999999887 4554444
No 486
>PHA00350 putative assembly protein
Probab=95.63 E-value=0.024 Score=55.87 Aligned_cols=61 Identities=18% Similarity=0.233 Sum_probs=36.6
Q ss_pred eeeeCCCCCCcHHHHHH--HHHHh--CCcEEEEecCCcCCchHHHHH---------------------------HHhcCC
Q 035959 231 YLLFGPPGTGKSSLIAA--MANYL--HFDVYDLELSSVEGNKHLRKV---------------------------LIATEN 279 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~a--ia~~l--~~~~~~l~~~~~~~~~~l~~~---------------------------l~~~~~ 279 (338)
++++|.||+|||..+-. +-..+ |..++ .+...+. .+.+.+. +.-.+.
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~GR~V~-TNI~Gl~-le~i~~~~~~~p~~~~li~i~~~~~~~~~~~~~~~~w~p~ 81 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKDGRKVI-TNIPGLN-LDVFEKVFGEFPSTARLIRIVDRNLEGFESMNRPFSWRPR 81 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHCCCEEE-ECCCCCC-HHHHHhhcccCcccceeEEeccccccchhhhccccccCCC
Confidence 57999999999997665 33333 54443 2333221 0111111 111347
Q ss_pred CcEEEEcCCCccCC
Q 035959 280 KSILVVGDIDCCTE 293 (338)
Q Consensus 280 ~~Il~iDeiD~~~~ 293 (338)
.++|||||+..+.+
T Consensus 82 gaLIViDEaq~~~p 95 (399)
T PHA00350 82 GALYVIDEAQMIFP 95 (399)
T ss_pred CCEEEEECchhhcC
Confidence 78999999999988
No 487
>PRK00023 cmk cytidylate kinase; Provisional
Probab=95.63 E-value=0.0094 Score=54.28 Aligned_cols=32 Identities=28% Similarity=0.420 Sum_probs=27.3
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcEEEEe
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYDLE 260 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~ 260 (338)
.-+.+.||||+|||++++.+|+.+|++++..+
T Consensus 5 ~~i~i~g~~gsGksti~~~la~~~~~~~~~~~ 36 (225)
T PRK00023 5 IVIAIDGPAGSGKGTVAKILAKKLGFHYLDTG 36 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccCc
Confidence 34679999999999999999999998776543
No 488
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=95.63 E-value=0.016 Score=64.42 Aligned_cols=64 Identities=25% Similarity=0.389 Sum_probs=49.0
Q ss_pred hhcCceeeeCCCCCCcHH-HHHHHHHHhCCcEEEEecCCcCCchHHHHHHH-hc------------C----CCcEEEEcC
Q 035959 226 AWKRGYLLFGPPGTGKSS-LIAAMANYLHFDVYDLELSSVEGNKHLRKVLI-AT------------E----NKSILVVGD 287 (338)
Q Consensus 226 ~~~~g~LL~GppGtGKT~-l~~aia~~l~~~~~~l~~~~~~~~~~l~~~l~-~~------------~----~~~Il~iDe 287 (338)
...|+|+++||||+|||. ++.++-+..-+++..++.+.-.+......++. .+ + +.-||+.||
T Consensus 1492 nt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVLFcDe 1571 (3164)
T COG5245 1492 NTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTMTPSKLSVLERETEYYPNTGVVRLYPKPVVKDLVLFCDE 1571 (3164)
T ss_pred hccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccCCHHHHHHHHhhceeeccCCeEEEccCcchhheEEEeec
Confidence 346999999999999999 47888889999999999987665443333333 33 1 346899999
Q ss_pred CC
Q 035959 288 ID 289 (338)
Q Consensus 288 iD 289 (338)
|.
T Consensus 1572 In 1573 (3164)
T COG5245 1572 IN 1573 (3164)
T ss_pred cC
Confidence 99
No 489
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.63 E-value=0.022 Score=54.95 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=24.3
Q ss_pred hcCceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 227 WKRGYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 227 ~~~g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
.+.++++.||+|+|||+++.|+..++.
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCC
Confidence 357899999999999999999999885
No 490
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=95.62 E-value=0.012 Score=55.89 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=24.1
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCCc
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHFD 255 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~~ 255 (338)
-+++.|++|||||+++..+|..++.+
T Consensus 94 iIlI~G~sgsGKStlA~~La~~l~~~ 119 (301)
T PRK04220 94 IILIGGASGVGTSTIAFELASRLGIR 119 (301)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 46899999999999999999999876
No 491
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=95.62 E-value=0.019 Score=48.18 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=18.9
Q ss_pred eeeeCCCCCCcHHHHHHHHHH
Q 035959 231 YLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~ 251 (338)
+++.|+||+|||+|+.+++..
T Consensus 3 i~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 679999999999999998864
No 492
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=95.61 E-value=0.01 Score=63.00 Aligned_cols=29 Identities=41% Similarity=0.650 Sum_probs=25.3
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhCCcEEEE
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLHFDVYDL 259 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~~~~~~l 259 (338)
+.+.||||||||++++.+|..+|+.+++.
T Consensus 4 i~I~G~~GsGKST~ak~la~~l~~~~~~~ 32 (712)
T PRK09518 4 VAIDGPAGVGKSSVSRALAQYLGYAYLDT 32 (712)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeec
Confidence 57899999999999999999999775543
No 493
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.61 E-value=0.008 Score=53.87 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.2
Q ss_pred CceeeeCCCCCCcHHHHHHHHHH
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~ 251 (338)
+-++|.||+|+|||+|+.++.+.
T Consensus 14 ~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 14 LLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred eEEEEECcCCCCHHHHHHHHHhc
Confidence 55789999999999999999754
No 494
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=95.58 E-value=0.012 Score=51.77 Aligned_cols=30 Identities=37% Similarity=0.509 Sum_probs=25.5
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhCCcEEEEe
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLHFDVYDLE 260 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~~~~~~l~ 260 (338)
+.|+|.+|+|||++++.++...++++++.|
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i~~D 31 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVIDAD 31 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEEeCC
Confidence 568999999999999999998777776553
No 495
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=95.56 E-value=0.049 Score=60.04 Aligned_cols=65 Identities=18% Similarity=0.302 Sum_probs=42.4
Q ss_pred cCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcC----------CchHHHHHHHh-------cCCCcEEEEcC
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVE----------GNKHLRKVLIA-------TENKSILVVGD 287 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~----------~~~~l~~~l~~-------~~~~~Il~iDe 287 (338)
.+-.++.|++|||||++++++...+ |+.++-+-++.-. ....+..++.. +..+.||||||
T Consensus 397 ~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~L~e~~Gi~a~TIas~ll~~~~~~~~l~~~~vlVIDE 476 (1102)
T PRK13826 397 ARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGLEKEAGIQSRTLSSWELRWNQGRDQLDNKTVFVLDE 476 (1102)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHHHHHhhCCCeeeHHHHHhhhccCccCCCCCcEEEEEC
Confidence 3556899999999999999987754 6666655333211 11234443222 23568999999
Q ss_pred CCccC
Q 035959 288 IDCCT 292 (338)
Q Consensus 288 iD~~~ 292 (338)
+-.+.
T Consensus 477 AsMv~ 481 (1102)
T PRK13826 477 AGMVA 481 (1102)
T ss_pred cccCC
Confidence 98764
No 496
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=95.55 E-value=0.055 Score=61.92 Aligned_cols=91 Identities=18% Similarity=0.211 Sum_probs=60.6
Q ss_pred CCcccc-ccCChhHHHHHHHHHHhhh--cCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCCchHH---------
Q 035959 203 PSTFDT-LAMDTDMKKMIMDDLERAW--KRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHL--------- 270 (338)
Q Consensus 203 p~~f~~-l~~~~~~k~~i~~~l~~~~--~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~~~~l--------- 270 (338)
+..+++ ++.-+.+++-+.+....-. +-.+||-||.|+|||+++.-+|...|..+..++..+..+-.++
T Consensus 412 ~~~~~~~~i~T~~vq~~la~~~~a~~~~~~pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y~~~~~ 491 (1856)
T KOG1808|consen 412 LTSEATHYIITPRVQKNLADLARAISSGKFPILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTYVADDN 491 (1856)
T ss_pred cccccceeeccHHHHHHHHHHHHHHhcCCCCeEEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHHhhhcCCC
Confidence 345555 5555555544443333322 2368999999999999999999999999998877664432111
Q ss_pred -------HHHHHhcCCCcEEEEcCCCccCC
Q 035959 271 -------RKVLIATENKSILVVGDIDCCTE 293 (338)
Q Consensus 271 -------~~~l~~~~~~~Il~iDeiD~~~~ 293 (338)
-.+...+.+.+.+++|++.....
T Consensus 492 g~l~freg~LV~Alr~G~~~vlD~lnla~~ 521 (1856)
T KOG1808|consen 492 GDLVFREGVLVQALRNGDWIVLDELNLAPH 521 (1856)
T ss_pred CCeeeehhHHHHHHHhCCEEEeccccccch
Confidence 12233334789999999887653
No 497
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.024 Score=55.56 Aligned_cols=64 Identities=23% Similarity=0.320 Sum_probs=45.8
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh--CCcEEEEecCCcC--------------------CchHHHHHHHhc--CCCcEEEE
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL--HFDVYDLELSSVE--------------------GNKHLRKVLIAT--ENKSILVV 285 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l--~~~~~~l~~~~~~--------------------~~~~l~~~l~~~--~~~~Il~i 285 (338)
-+|+-|.||.|||+|+--+|..+ ..++.++...+-. .+.++..++..+ .+|.+++|
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~lvVI 174 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPDLVVI 174 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCCCEEEE
Confidence 36899999999999877777665 2378888765522 133444444444 48999999
Q ss_pred cCCCccCC
Q 035959 286 GDIDCCTE 293 (338)
Q Consensus 286 DeiD~~~~ 293 (338)
|-|..+..
T Consensus 175 DSIQT~~s 182 (456)
T COG1066 175 DSIQTLYS 182 (456)
T ss_pred eccceeec
Confidence 99999976
No 498
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.52 E-value=0.023 Score=52.68 Aligned_cols=50 Identities=32% Similarity=0.394 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhhcCce--eeeCCCCCCcHHHHHHHHHHh---C--CcEEEEecCCcC
Q 035959 216 KKMIMDDLERAWKRGY--LLFGPPGTGKSSLIAAMANYL---H--FDVYDLELSSVE 265 (338)
Q Consensus 216 k~~i~~~l~~~~~~g~--LL~GppGtGKT~l~~aia~~l---~--~~~~~l~~~~~~ 265 (338)
.+++++.+....++.+ =++||||.|||+|+.+++.++ | ..++-+|.++..
T Consensus 15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~ 71 (266)
T PF03308_consen 15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPF 71 (266)
T ss_dssp HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGC
T ss_pred HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCC
Confidence 3445555543223333 389999999999999999887 2 346777777654
No 499
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=95.51 E-value=0.032 Score=47.02 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=18.6
Q ss_pred eeeeCCCCCCcHHHHHHHHHH
Q 035959 231 YLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~ 251 (338)
+++.|+||+|||+|+.++...
T Consensus 3 i~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 3 LVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 678999999999999999863
No 500
>PRK08356 hypothetical protein; Provisional
Probab=95.51 E-value=0.013 Score=51.82 Aligned_cols=25 Identities=16% Similarity=0.139 Sum_probs=21.1
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCCc
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHFD 255 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~~ 255 (338)
-++|.||||+|||+++..++. .|+.
T Consensus 7 ~i~~~G~~gsGK~t~a~~l~~-~g~~ 31 (195)
T PRK08356 7 IVGVVGKIAAGKTTVAKFFEE-KGFC 31 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCc
Confidence 367899999999999999964 6665
Done!