Query 035959
Match_columns 338
No_of_seqs 343 out of 2180
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 13:22:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035959.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035959hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 99.8 1.7E-20 5.7E-25 182.2 12.0 122 202-331 143-285 (405)
2 4b4t_K 26S protease regulatory 99.8 1.9E-20 6.6E-25 183.7 11.3 125 201-333 166-311 (428)
3 4b4t_M 26S protease regulatory 99.8 2.2E-20 7.4E-25 183.5 10.8 124 200-331 174-318 (434)
4 4b4t_L 26S protease subunit RP 99.8 7E-20 2.4E-24 180.0 13.2 123 201-331 175-318 (437)
5 4b4t_I 26S protease regulatory 99.8 5.6E-20 1.9E-24 179.3 11.9 122 202-331 177-319 (437)
6 4b4t_H 26S protease regulatory 99.8 5.7E-19 2E-23 173.6 11.4 123 201-331 203-346 (467)
7 3cf2_A TER ATPase, transitiona 99.7 5.4E-17 1.8E-21 169.9 6.0 121 203-331 473-614 (806)
8 3cf2_A TER ATPase, transitiona 99.6 1.6E-16 5.5E-21 166.3 8.6 117 204-331 201-338 (806)
9 1xwi_A SKD1 protein; VPS4B, AA 99.6 2.1E-15 7.3E-20 142.8 13.0 119 202-331 7-146 (322)
10 3eie_A Vacuolar protein sortin 99.6 1.3E-15 4.3E-20 144.1 9.8 126 200-336 11-156 (322)
11 3cf0_A Transitional endoplasmi 99.6 7.2E-15 2.4E-19 137.7 9.4 121 202-330 10-151 (301)
12 2zan_A Vacuolar protein sortin 99.6 1.6E-14 5.5E-19 142.6 12.0 122 201-333 128-270 (444)
13 2qp9_X Vacuolar protein sortin 99.5 5.8E-15 2E-19 141.7 8.3 119 201-330 45-183 (355)
14 3h4m_A Proteasome-activating n 99.5 1.4E-14 4.9E-19 133.6 10.0 123 200-330 10-153 (285)
15 2qz4_A Paraplegin; AAA+, SPG7, 99.5 3.7E-14 1.2E-18 128.8 12.2 121 203-330 2-142 (262)
16 3b9p_A CG5977-PA, isoform A; A 99.5 3.8E-14 1.3E-18 131.6 11.6 120 201-331 15-154 (297)
17 3t15_A Ribulose bisphosphate c 99.5 1.9E-14 6.4E-19 134.5 8.5 95 226-329 34-140 (293)
18 3vfd_A Spastin; ATPase, microt 99.5 3.4E-14 1.2E-18 137.7 10.3 121 199-330 107-247 (389)
19 2ce7_A Cell division protein F 99.5 4.7E-14 1.6E-18 140.3 11.2 120 203-330 12-151 (476)
20 1lv7_A FTSH; alpha/beta domain 99.5 9E-14 3.1E-18 126.6 11.9 123 200-330 5-147 (257)
21 3d8b_A Fidgetin-like protein 1 99.5 7.2E-14 2.5E-18 134.0 10.5 118 202-330 79-216 (357)
22 2r62_A Cell division protease 99.5 1.3E-14 4.5E-19 132.8 3.2 123 202-331 6-148 (268)
23 3hu3_A Transitional endoplasmi 99.4 7.4E-14 2.5E-18 139.5 7.1 118 202-330 199-337 (489)
24 2x8a_A Nuclear valosin-contain 99.4 6.4E-13 2.2E-17 123.1 10.6 117 203-330 6-143 (274)
25 3pfi_A Holliday junction ATP-d 99.4 1.9E-12 6.5E-17 122.2 12.4 99 193-293 17-120 (338)
26 2dhr_A FTSH; AAA+ protein, hex 99.4 2.3E-12 7.9E-17 128.8 11.9 121 202-330 26-166 (499)
27 1hqc_A RUVB; extended AAA-ATPa 99.3 5.5E-12 1.9E-16 118.0 11.9 94 200-293 5-104 (324)
28 2c9o_A RUVB-like 1; hexameric 99.3 2.7E-12 9.3E-17 127.0 7.9 95 203-299 33-144 (456)
29 1ixz_A ATP-dependent metallopr 99.3 3.7E-12 1.3E-16 115.6 8.0 122 201-330 10-151 (254)
30 1sxj_A Activator 1 95 kDa subu 99.3 8.9E-12 3E-16 125.1 11.3 100 192-293 26-162 (516)
31 3hws_A ATP-dependent CLP prote 99.3 3.1E-12 1.1E-16 122.6 6.7 112 209-328 17-157 (363)
32 1ypw_A Transitional endoplasmi 99.3 7.3E-13 2.5E-17 139.7 1.3 121 203-331 473-614 (806)
33 3n70_A Transport activator; si 99.3 1.4E-11 4.8E-16 102.8 8.6 84 208-293 2-90 (145)
34 1ofh_A ATP-dependent HSL prote 99.2 1.3E-11 4.5E-16 114.3 9.1 111 208-328 16-155 (310)
35 2chg_A Replication factor C sm 99.2 4.4E-11 1.5E-15 104.3 11.8 94 200-293 10-116 (226)
36 3u61_B DNA polymerase accessor 99.2 1.6E-11 5.3E-16 115.4 9.4 98 192-292 13-118 (324)
37 2p65_A Hypothetical protein PF 99.2 1.7E-11 5.6E-16 104.5 8.1 93 201-293 16-129 (187)
38 1jbk_A CLPB protein; beta barr 99.2 1.5E-11 5.2E-16 104.7 7.4 92 202-293 17-129 (195)
39 1ypw_A Transitional endoplasmi 99.2 1.4E-11 4.8E-16 130.0 8.6 118 202-330 199-337 (806)
40 3syl_A Protein CBBX; photosynt 99.2 3.6E-11 1.2E-15 111.8 9.6 106 208-327 32-165 (309)
41 1iy2_A ATP-dependent metallopr 99.2 2.5E-11 8.4E-16 111.9 8.4 121 201-329 34-174 (278)
42 1d2n_A N-ethylmaleimide-sensit 99.2 9.9E-11 3.4E-15 107.3 10.7 92 226-329 62-162 (272)
43 1um8_A ATP-dependent CLP prote 99.2 1.8E-10 6.1E-15 110.7 12.4 113 208-328 22-178 (376)
44 3pvs_A Replication-associated 99.1 9E-11 3.1E-15 115.9 9.8 93 200-293 19-120 (447)
45 2bjv_A PSP operon transcriptio 99.1 1.6E-10 5.5E-15 105.4 9.8 89 204-293 3-114 (265)
46 1njg_A DNA polymerase III subu 99.1 3.3E-10 1.1E-14 99.7 11.3 93 200-292 16-139 (250)
47 3co5_A Putative two-component 99.1 2.9E-11 9.9E-16 100.7 3.3 82 209-293 6-89 (143)
48 3ec2_A DNA replication protein 99.1 6.9E-11 2.4E-15 101.6 5.6 90 202-291 5-112 (180)
49 1sxj_D Activator 1 41 kDa subu 99.1 1.4E-10 4.8E-15 109.5 8.0 99 193-293 25-147 (353)
50 1iqp_A RFCS; clamp loader, ext 99.1 2.3E-10 7.7E-15 106.6 8.8 99 193-293 13-124 (327)
51 2chq_A Replication factor C sm 99.1 1.3E-10 4.4E-15 107.9 6.3 98 194-293 6-116 (319)
52 3uk6_A RUVB-like 2; hexameric 99.1 3.5E-10 1.2E-14 107.7 9.4 62 202-263 38-107 (368)
53 1in4_A RUVB, holliday junction 99.1 9.4E-10 3.2E-14 104.3 12.1 95 199-293 17-116 (334)
54 3bos_A Putative DNA replicatio 99.0 1.8E-10 6.1E-15 102.2 6.2 93 199-293 20-118 (242)
55 1l8q_A Chromosomal replication 99.0 3.1E-10 1E-14 106.7 8.0 94 200-293 4-112 (324)
56 1jr3_A DNA polymerase III subu 99.0 1.2E-09 4E-14 103.9 11.1 94 200-293 9-133 (373)
57 1g41_A Heat shock protein HSLU 99.0 1.3E-10 4.6E-15 114.2 4.2 108 208-331 16-145 (444)
58 1sxj_B Activator 1 37 kDa subu 99.0 7.7E-10 2.6E-14 102.8 9.2 98 194-293 10-121 (323)
59 4fcw_A Chaperone protein CLPB; 99.0 1.6E-09 5.4E-14 100.6 10.2 86 207-293 17-133 (311)
60 2w58_A DNAI, primosome compone 99.0 4.1E-10 1.4E-14 98.4 4.9 91 202-292 20-128 (202)
61 2r44_A Uncharacterized protein 98.9 5.7E-10 2E-14 105.0 5.3 89 203-293 23-123 (331)
62 1g8p_A Magnesium-chelatase 38 98.9 2.5E-09 8.5E-14 100.8 9.6 54 200-253 17-70 (350)
63 1sxj_C Activator 1 40 kDa subu 98.9 3.2E-09 1.1E-13 100.5 10.3 99 193-293 13-124 (340)
64 1r6b_X CLPA protein; AAA+, N-t 98.9 3.6E-09 1.2E-13 110.7 11.5 93 201-293 180-292 (758)
65 1qvr_A CLPB protein; coiled co 98.9 1.9E-09 6.4E-14 114.4 9.0 93 201-293 164-277 (854)
66 2v1u_A Cell division control p 98.9 2.2E-09 7.4E-14 102.0 8.5 89 205-293 17-144 (387)
67 2z4s_A Chromosomal replication 98.9 1.9E-09 6.4E-14 106.2 8.3 94 200-293 98-208 (440)
68 2qby_A CDC6 homolog 1, cell di 98.9 2.6E-09 8.9E-14 101.3 7.2 89 205-293 18-142 (386)
69 1ojl_A Transcriptional regulat 98.8 5.6E-09 1.9E-13 97.8 8.6 85 208-293 3-110 (304)
70 1sxj_E Activator 1 40 kDa subu 98.8 9.7E-09 3.3E-13 97.1 10.1 54 199-252 6-60 (354)
71 1fnn_A CDC6P, cell division co 98.8 3E-08 1E-12 94.4 13.2 86 206-291 16-137 (389)
72 2qgz_A Helicase loader, putati 98.8 2E-09 6.7E-14 101.2 4.6 89 203-291 120-226 (308)
73 3te6_A Regulatory protein SIR3 98.8 7.2E-09 2.4E-13 97.8 8.2 67 226-292 43-145 (318)
74 1r6b_X CLPA protein; AAA+, N-t 98.8 1.8E-08 6.2E-13 105.3 11.0 96 208-326 459-582 (758)
75 3pxi_A Negative regulator of g 98.8 1.6E-08 5.4E-13 105.9 10.0 98 207-327 491-605 (758)
76 2kjq_A DNAA-related protein; s 98.8 1.4E-08 4.9E-13 85.2 7.7 81 204-293 14-97 (149)
77 2qby_B CDC6 homolog 3, cell di 98.8 9.7E-09 3.3E-13 97.8 7.3 87 207-293 20-147 (384)
78 3m6a_A ATP-dependent protease 98.8 1.1E-08 3.6E-13 103.4 7.9 87 207-293 81-189 (543)
79 3pxg_A Negative regulator of g 98.7 1.7E-08 5.9E-13 100.0 7.9 87 200-286 173-274 (468)
80 1qvr_A CLPB protein; coiled co 98.7 2.7E-08 9.3E-13 105.5 9.9 97 207-326 558-685 (854)
81 1tue_A Replication protein E1; 98.6 1.1E-08 3.8E-13 90.4 3.4 60 226-291 56-115 (212)
82 1a5t_A Delta prime, HOLB; zinc 98.6 1.4E-07 4.7E-12 89.2 11.2 80 214-293 9-122 (334)
83 3pxi_A Negative regulator of g 98.6 5.1E-08 1.7E-12 102.1 7.9 87 200-286 173-274 (758)
84 2gno_A DNA polymerase III, gam 98.6 8.4E-08 2.9E-12 90.0 8.6 81 213-293 3-96 (305)
85 3nbx_X ATPase RAVA; AAA+ ATPas 98.5 1.5E-07 5.2E-12 94.0 7.6 81 209-292 24-122 (500)
86 2vhj_A Ntpase P4, P4; non- hyd 98.4 1.2E-07 4.2E-12 89.3 3.3 91 229-329 124-222 (331)
87 1w5s_A Origin recognition comp 98.4 6.2E-07 2.1E-11 85.9 8.0 87 207-293 22-152 (412)
88 2fna_A Conserved hypothetical 98.4 1.4E-06 4.9E-11 81.3 9.9 55 205-263 11-65 (357)
89 3cmw_A Protein RECA, recombina 98.3 7.5E-07 2.6E-11 99.6 7.0 94 231-329 1085-1205(1706)
90 3k1j_A LON protease, ATP-depen 98.2 2.8E-06 9.7E-11 86.6 9.2 52 200-253 34-85 (604)
91 4akg_A Glutathione S-transfera 98.2 5.9E-06 2E-10 96.1 12.7 67 226-292 1265-1349(2695)
92 3f9v_A Minichromosome maintena 98.2 9.8E-08 3.3E-12 97.4 -2.2 84 209-293 297-405 (595)
93 2qen_A Walker-type ATPase; unk 98.2 4.7E-06 1.6E-10 77.7 9.0 55 204-262 9-63 (350)
94 1svm_A Large T antigen; AAA+ f 98.1 6.7E-06 2.3E-10 79.2 9.2 89 226-329 167-255 (377)
95 4akg_A Glutathione S-transfera 98.1 6.7E-06 2.3E-10 95.7 9.8 85 209-293 625-711 (2695)
96 3cmu_A Protein RECA, recombina 98.1 4.1E-06 1.4E-10 94.8 7.8 100 227-331 1426-1552(2050)
97 1u0j_A DNA replication protein 98.1 5.1E-06 1.8E-10 76.2 7.1 69 217-292 91-161 (267)
98 1ny5_A Transcriptional regulat 97.9 3.5E-05 1.2E-09 74.3 9.8 85 208-293 138-245 (387)
99 3dzd_A Transcriptional regulat 97.9 6.5E-05 2.2E-09 71.9 11.4 86 208-293 130-236 (368)
100 2r2a_A Uncharacterized protein 97.8 1.4E-05 4.7E-10 70.2 3.8 64 230-293 7-101 (199)
101 3upu_A ATP-dependent DNA helic 97.6 9.7E-05 3.3E-09 72.6 7.1 61 199-262 16-83 (459)
102 3kb2_A SPBC2 prophage-derived 97.6 6E-05 2E-09 63.0 4.7 31 230-260 3-33 (173)
103 3trf_A Shikimate kinase, SK; a 97.5 4.2E-05 1.4E-09 65.1 3.4 32 229-260 6-37 (185)
104 1qhx_A CPT, protein (chloramph 97.5 7.4E-05 2.5E-09 63.0 4.7 33 229-261 4-36 (178)
105 3vkg_A Dynein heavy chain, cyt 97.5 0.0004 1.4E-08 81.8 11.2 68 226-293 1302-1388(3245)
106 1ye8_A Protein THEP1, hypothet 97.4 0.00017 5.7E-09 62.0 5.9 25 231-255 3-27 (178)
107 3vkg_A Dynein heavy chain, cyt 97.4 0.00039 1.3E-08 81.9 10.4 67 227-293 603-670 (3245)
108 3vaa_A Shikimate kinase, SK; s 97.4 8.5E-05 2.9E-09 64.4 3.4 32 229-260 26-57 (199)
109 2cvh_A DNA repair and recombin 97.4 0.00047 1.6E-08 59.8 8.1 35 229-263 21-55 (220)
110 3iij_A Coilin-interacting nucl 97.4 9.4E-05 3.2E-09 62.7 3.3 32 229-260 12-43 (180)
111 1via_A Shikimate kinase; struc 97.3 9.3E-05 3.2E-09 62.5 3.2 31 230-260 6-36 (175)
112 1z6t_A APAF-1, apoptotic prote 97.3 0.00045 1.5E-08 69.5 8.7 48 203-250 120-169 (591)
113 2orw_A Thymidine kinase; TMTK, 97.3 8.2E-05 2.8E-09 64.2 2.7 63 230-292 5-89 (184)
114 1zuh_A Shikimate kinase; alpha 97.3 0.00012 4.1E-09 61.4 3.3 32 229-260 8-39 (168)
115 2iyv_A Shikimate kinase, SK; t 97.3 0.00011 3.9E-09 62.3 3.2 32 229-260 3-34 (184)
116 3hr8_A Protein RECA; alpha and 97.3 0.00049 1.7E-08 65.6 7.8 64 230-293 63-153 (356)
117 1kag_A SKI, shikimate kinase I 97.3 0.00019 6.6E-09 60.1 4.4 31 229-259 5-35 (173)
118 2ze6_A Isopentenyl transferase 97.2 0.00018 6E-09 65.2 4.0 32 230-261 3-34 (253)
119 2z43_A DNA repair and recombin 97.2 0.00052 1.8E-08 64.3 7.1 35 229-263 108-151 (324)
120 1u94_A RECA protein, recombina 97.2 0.00078 2.7E-08 64.2 8.4 65 229-293 64-155 (356)
121 1y63_A LMAJ004144AAA protein; 97.2 0.00013 4.4E-09 62.5 2.7 32 229-260 11-43 (184)
122 3e1s_A Exodeoxyribonuclease V, 97.2 0.00039 1.3E-08 70.4 6.6 79 211-292 190-292 (574)
123 1e6c_A Shikimate kinase; phosp 97.2 0.00016 5.3E-09 60.6 3.1 32 229-260 3-34 (173)
124 2rhm_A Putative kinase; P-loop 97.2 0.00013 4.3E-09 62.3 2.5 32 229-260 6-37 (193)
125 2zr9_A Protein RECA, recombina 97.2 0.00078 2.7E-08 64.0 8.0 65 229-293 62-153 (349)
126 3lw7_A Adenylate kinase relate 97.2 0.00019 6.5E-09 59.6 3.1 29 230-259 3-31 (179)
127 2r8r_A Sensor protein; KDPD, P 97.2 0.00033 1.1E-08 62.6 4.7 60 230-291 8-96 (228)
128 2cdn_A Adenylate kinase; phosp 97.1 0.00021 7.1E-09 61.8 3.3 30 230-259 22-51 (201)
129 2pt5_A Shikimate kinase, SK; a 97.1 0.00023 8E-09 59.3 3.3 30 231-260 3-32 (168)
130 1tev_A UMP-CMP kinase; ploop, 97.1 0.00023 7.9E-09 60.5 3.1 31 229-259 4-34 (196)
131 3t61_A Gluconokinase; PSI-biol 97.1 0.00027 9.2E-09 61.1 3.6 32 229-260 19-50 (202)
132 3cmu_A Protein RECA, recombina 97.1 0.00081 2.8E-08 76.5 8.3 67 227-293 1080-1173(2050)
133 3cm0_A Adenylate kinase; ATP-b 97.1 0.0002 6.9E-09 60.8 2.6 30 230-259 6-35 (186)
134 1kht_A Adenylate kinase; phosp 97.1 0.0002 6.9E-09 60.7 2.6 31 229-259 4-39 (192)
135 3dl0_A Adenylate kinase; phosp 97.1 0.00026 9E-09 61.8 3.2 29 231-259 3-31 (216)
136 3jvv_A Twitching mobility prot 97.1 0.0012 4.2E-08 62.8 8.2 82 203-289 103-206 (356)
137 2bwj_A Adenylate kinase 5; pho 97.0 0.00025 8.5E-09 60.7 2.8 32 228-259 12-43 (199)
138 2c95_A Adenylate kinase 1; tra 97.0 0.00026 8.8E-09 60.4 2.8 31 229-259 10-40 (196)
139 3fb4_A Adenylate kinase; psych 97.0 0.00029 1E-08 61.4 3.2 29 231-259 3-31 (216)
140 2b8t_A Thymidine kinase; deoxy 97.0 0.0016 5.3E-08 58.1 7.9 62 231-292 15-102 (223)
141 2p5t_B PEZT; postsegregational 97.0 0.00053 1.8E-08 61.8 4.9 36 229-264 33-68 (253)
142 1xp8_A RECA protein, recombina 97.0 0.0015 5E-08 62.5 8.1 65 229-293 75-166 (366)
143 1gvn_B Zeta; postsegregational 97.0 0.00088 3E-08 61.7 6.3 33 229-261 34-66 (287)
144 1aky_A Adenylate kinase; ATP:A 97.0 0.00033 1.1E-08 61.4 3.1 30 230-259 6-35 (220)
145 2vli_A Antibiotic resistance p 97.0 0.00035 1.2E-08 59.0 3.2 29 229-257 6-34 (183)
146 1qf9_A UMP/CMP kinase, protein 97.0 0.00028 9.7E-09 59.8 2.6 31 229-259 7-37 (194)
147 1ly1_A Polynucleotide kinase; 97.0 0.00031 1.1E-08 59.0 2.7 29 229-257 3-32 (181)
148 1knq_A Gluconate kinase; ALFA/ 97.0 0.0004 1.4E-08 58.4 3.4 30 230-259 10-39 (175)
149 1v5w_A DMC1, meiotic recombina 97.0 0.0016 5.4E-08 61.6 7.7 34 230-263 124-166 (343)
150 2pbr_A DTMP kinase, thymidylat 96.9 0.0007 2.4E-08 57.5 4.7 31 231-261 3-36 (195)
151 1ak2_A Adenylate kinase isoenz 96.9 0.0004 1.4E-08 61.6 3.1 31 229-259 17-47 (233)
152 1ukz_A Uridylate kinase; trans 96.9 0.0004 1.4E-08 59.9 3.1 32 229-260 16-47 (203)
153 1zd8_A GTP:AMP phosphotransfer 96.9 0.00034 1.2E-08 61.7 2.5 31 229-259 8-38 (227)
154 3be4_A Adenylate kinase; malar 96.9 0.00037 1.3E-08 61.2 2.6 30 230-259 7-36 (217)
155 1zp6_A Hypothetical protein AT 96.9 0.00039 1.3E-08 59.2 2.4 33 229-261 10-42 (191)
156 4b3f_X DNA-binding protein smu 96.9 0.0018 6.3E-08 66.2 7.8 50 210-261 189-241 (646)
157 3cmw_A Protein RECA, recombina 96.8 0.002 7E-08 72.3 8.4 66 228-293 34-126 (1706)
158 4eun_A Thermoresistant glucoki 96.8 0.00079 2.7E-08 58.2 4.2 30 229-258 30-59 (200)
159 2fz4_A DNA repair protein RAD2 96.8 0.002 6.7E-08 57.5 6.9 34 229-262 109-142 (237)
160 2pez_A Bifunctional 3'-phospho 96.8 0.001 3.5E-08 56.2 4.7 32 230-261 7-41 (179)
161 1e4v_A Adenylate kinase; trans 96.8 0.0005 1.7E-08 60.1 2.7 29 231-259 3-31 (214)
162 2plr_A DTMP kinase, probable t 96.8 0.0019 6.4E-08 55.5 6.1 30 230-259 6-37 (213)
163 2jaq_A Deoxyguanosine kinase; 96.8 0.00088 3E-08 57.3 3.9 28 231-258 3-30 (205)
164 3sfz_A APAF-1, apoptotic pepti 96.8 0.003 1E-07 68.3 8.9 62 202-263 119-189 (1249)
165 1vt4_I APAF-1 related killer D 96.8 0.0056 1.9E-07 65.9 10.6 54 210-263 131-191 (1221)
166 1zak_A Adenylate kinase; ATP:A 96.7 0.00039 1.3E-08 61.1 1.5 30 229-258 6-35 (222)
167 3crm_A TRNA delta(2)-isopenten 96.7 0.00073 2.5E-08 63.5 3.5 33 229-261 6-38 (323)
168 2xb4_A Adenylate kinase; ATP-b 96.7 0.00096 3.3E-08 58.8 4.1 29 231-259 3-31 (223)
169 2z0h_A DTMP kinase, thymidylat 96.7 0.0012 4E-08 56.3 4.5 31 231-261 3-36 (197)
170 3tlx_A Adenylate kinase 2; str 96.7 0.00068 2.3E-08 60.8 3.1 30 230-259 31-60 (243)
171 1cke_A CK, MSSA, protein (cyti 96.7 0.00099 3.4E-08 58.3 4.0 29 230-258 7-35 (227)
172 3nwj_A ATSK2; P loop, shikimat 96.7 0.0017 5.7E-08 58.8 5.6 33 228-260 48-80 (250)
173 2v54_A DTMP kinase, thymidylat 96.7 0.00095 3.2E-08 57.3 3.7 32 230-261 6-38 (204)
174 1w4r_A Thymidine kinase; type 96.7 0.0027 9.1E-08 55.4 6.4 63 230-293 22-104 (195)
175 3f8t_A Predicted ATPase involv 96.7 0.00079 2.7E-08 66.4 3.3 82 209-293 215-314 (506)
176 3umf_A Adenylate kinase; rossm 96.7 0.001 3.5E-08 59.0 3.8 29 229-257 30-58 (217)
177 1nks_A Adenylate kinase; therm 96.7 0.00064 2.2E-08 57.6 2.2 31 230-260 3-36 (194)
178 3sr0_A Adenylate kinase; phosp 96.7 0.0012 4E-08 58.0 4.0 27 231-257 3-29 (206)
179 2if2_A Dephospho-COA kinase; a 96.7 0.00071 2.4E-08 58.3 2.5 29 231-260 4-32 (204)
180 3uie_A Adenylyl-sulfate kinase 96.6 0.0016 5.4E-08 56.2 4.6 34 229-262 26-62 (200)
181 3a4m_A L-seryl-tRNA(SEC) kinas 96.6 0.0015 5.1E-08 59.1 4.5 32 230-261 6-40 (260)
182 3ake_A Cytidylate kinase; CMP 96.6 0.0014 5E-08 56.2 4.2 31 230-260 4-34 (208)
183 1n0w_A DNA repair protein RAD5 96.6 0.0032 1.1E-07 55.3 6.4 35 229-263 25-68 (243)
184 1jjv_A Dephospho-COA kinase; P 96.6 0.00096 3.3E-08 57.7 2.7 29 230-259 4-32 (206)
185 3r20_A Cytidylate kinase; stru 96.5 0.0016 5.5E-08 58.4 4.0 31 229-259 10-40 (233)
186 2v3c_C SRP54, signal recogniti 96.5 0.0038 1.3E-07 61.0 6.9 64 229-292 100-193 (432)
187 2bbw_A Adenylate kinase 4, AK4 96.5 0.0015 5.2E-08 58.2 3.8 29 229-257 28-56 (246)
188 2a5y_B CED-4; apoptosis; HET: 96.5 0.0076 2.6E-07 60.3 9.3 41 210-250 131-174 (549)
189 2grj_A Dephospho-COA kinase; T 96.5 0.0013 4.6E-08 57.0 3.1 30 230-259 14-43 (192)
190 3io5_A Recombination and repai 96.5 0.0064 2.2E-07 57.1 7.8 63 231-293 31-125 (333)
191 2px0_A Flagellar biosynthesis 96.4 0.0053 1.8E-07 56.8 7.0 59 229-287 106-190 (296)
192 2wwf_A Thymidilate kinase, put 96.4 0.00069 2.4E-08 58.6 0.9 26 229-254 11-36 (212)
193 1g5t_A COB(I)alamin adenosyltr 96.4 0.0045 1.5E-07 54.0 6.0 34 229-262 29-65 (196)
194 3lda_A DNA repair protein RAD5 96.4 0.0069 2.3E-07 58.6 7.7 34 230-263 180-222 (400)
195 1uj2_A Uridine-cytidine kinase 96.4 0.0023 7.9E-08 57.4 4.1 26 230-255 24-49 (252)
196 1uf9_A TT1252 protein; P-loop, 96.3 0.0014 4.9E-08 56.0 2.5 30 230-260 10-39 (203)
197 2bdt_A BH3686; alpha-beta prot 96.3 0.0026 8.9E-08 54.1 3.9 25 230-254 4-28 (189)
198 4a74_A DNA repair and recombin 96.3 0.0059 2E-07 53.1 6.2 23 230-252 27-49 (231)
199 4e22_A Cytidylate kinase; P-lo 96.3 0.0027 9.3E-08 57.1 4.1 29 230-258 29-57 (252)
200 2yvu_A Probable adenylyl-sulfa 96.3 0.0036 1.2E-07 53.1 4.7 32 230-261 15-49 (186)
201 2h92_A Cytidylate kinase; ross 96.3 0.0023 7.8E-08 55.7 3.4 31 229-259 4-34 (219)
202 2ga8_A Hypothetical 39.9 kDa p 96.3 0.0017 5.9E-08 61.8 2.7 46 213-258 5-54 (359)
203 1vht_A Dephospho-COA kinase; s 96.2 0.0021 7.3E-08 56.0 3.1 29 230-259 6-34 (218)
204 2qor_A Guanylate kinase; phosp 96.2 0.0024 8.3E-08 55.2 3.3 25 229-253 13-37 (204)
205 3zvl_A Bifunctional polynucleo 96.2 0.0028 9.5E-08 61.5 4.0 29 229-257 259-287 (416)
206 1nn5_A Similar to deoxythymidy 96.2 0.0011 3.8E-08 57.3 0.9 31 229-259 10-43 (215)
207 3a8t_A Adenylate isopentenyltr 96.2 0.0018 6.2E-08 61.2 2.4 32 230-261 42-73 (339)
208 2w0m_A SSO2452; RECA, SSPF, un 96.2 0.005 1.7E-07 53.4 5.0 33 229-261 24-59 (235)
209 1ltq_A Polynucleotide kinase; 96.0 0.0022 7.5E-08 58.8 2.0 30 229-258 3-33 (301)
210 1q3t_A Cytidylate kinase; nucl 96.0 0.0046 1.6E-07 54.8 4.0 30 230-259 18-47 (236)
211 3b6e_A Interferon-induced heli 96.0 0.0078 2.7E-07 51.6 5.4 25 228-252 48-72 (216)
212 1kgd_A CASK, peripheral plasma 96.0 0.0037 1.3E-07 53.0 3.2 25 229-253 6-30 (180)
213 1ex7_A Guanylate kinase; subst 96.0 0.0056 1.9E-07 52.9 4.3 25 229-253 2-26 (186)
214 3c8u_A Fructokinase; YP_612366 96.0 0.0057 1.9E-07 53.1 4.4 23 231-253 25-47 (208)
215 1rz3_A Hypothetical protein rb 96.0 0.01 3.4E-07 51.2 5.9 46 217-262 8-59 (201)
216 2dr3_A UPF0273 protein PH0284; 95.9 0.0061 2.1E-07 53.5 4.6 34 229-262 24-60 (247)
217 2qmh_A HPR kinase/phosphorylas 95.9 0.0033 1.1E-07 55.1 2.7 26 228-253 34-59 (205)
218 3foz_A TRNA delta(2)-isopenten 95.9 0.004 1.4E-07 58.2 3.5 32 229-260 11-42 (316)
219 3tau_A Guanylate kinase, GMP k 95.9 0.0036 1.2E-07 54.5 3.0 25 229-253 9-33 (208)
220 2eyu_A Twitching motility prot 95.9 0.0057 2E-07 55.5 4.4 43 205-252 7-49 (261)
221 1p9r_A General secretion pathw 95.9 0.0091 3.1E-07 58.0 6.1 49 203-253 143-192 (418)
222 3tr0_A Guanylate kinase, GMP k 95.9 0.0042 1.4E-07 53.2 3.2 24 230-253 9-32 (205)
223 2j41_A Guanylate kinase; GMP, 95.9 0.0037 1.3E-07 53.6 2.7 24 229-252 7-30 (207)
224 3d3q_A TRNA delta(2)-isopenten 95.9 0.0042 1.4E-07 58.7 3.3 32 229-260 8-39 (340)
225 1m7g_A Adenylylsulfate kinase; 95.9 0.0054 1.8E-07 53.3 3.8 33 229-261 26-62 (211)
226 2qt1_A Nicotinamide riboside k 95.8 0.0024 8.3E-08 55.2 1.4 29 230-258 23-52 (207)
227 3dm5_A SRP54, signal recogniti 95.8 0.0091 3.1E-07 58.4 5.6 35 229-263 101-138 (443)
228 3fdi_A Uncharacterized protein 95.8 0.0047 1.6E-07 53.7 3.2 29 230-258 8-36 (201)
229 2i1q_A DNA repair and recombin 95.8 0.0094 3.2E-07 55.3 5.3 35 230-264 100-153 (322)
230 2f6r_A COA synthase, bifunctio 95.8 0.0038 1.3E-07 57.2 2.5 29 230-259 77-105 (281)
231 1pzn_A RAD51, DNA repair and r 95.7 0.011 3.9E-07 55.8 5.7 34 230-263 133-175 (349)
232 2gk6_A Regulator of nonsense t 95.7 0.0086 2.9E-07 61.1 5.2 39 211-252 181-219 (624)
233 3a00_A Guanylate kinase, GMP k 95.7 0.0056 1.9E-07 52.1 3.2 25 229-253 2-26 (186)
234 3exa_A TRNA delta(2)-isopenten 95.7 0.0052 1.8E-07 57.5 3.0 31 229-259 4-34 (322)
235 1xx6_A Thymidine kinase; NESG, 95.6 0.017 5.8E-07 49.9 6.1 63 231-293 11-95 (191)
236 1lvg_A Guanylate kinase, GMP k 95.6 0.0066 2.3E-07 52.4 3.3 24 229-252 5-28 (198)
237 2zts_A Putative uncharacterize 95.6 0.013 4.3E-07 51.5 5.1 34 230-263 32-69 (251)
238 1kao_A RAP2A; GTP-binding prot 95.5 0.019 6.7E-07 46.4 5.8 22 230-251 5-26 (167)
239 3asz_A Uridine kinase; cytidin 95.5 0.0088 3E-07 51.6 3.6 23 231-253 9-31 (211)
240 3ney_A 55 kDa erythrocyte memb 95.4 0.0085 2.9E-07 52.2 3.2 25 229-253 20-44 (197)
241 4eaq_A DTMP kinase, thymidylat 95.4 0.0095 3.2E-07 52.8 3.6 30 230-259 28-59 (229)
242 3gmt_A Adenylate kinase; ssgci 95.4 0.0097 3.3E-07 53.2 3.6 29 231-259 11-39 (230)
243 2ehv_A Hypothetical protein PH 95.4 0.0073 2.5E-07 53.1 2.9 21 229-249 31-51 (251)
244 1jr3_D DNA polymerase III, del 95.3 0.03 1E-06 52.1 7.1 64 226-292 16-90 (343)
245 1c9k_A COBU, adenosylcobinamid 95.3 0.013 4.4E-07 50.3 4.1 33 231-264 2-34 (180)
246 1x6v_B Bifunctional 3'-phospho 95.3 0.011 3.8E-07 60.3 4.3 32 230-261 54-88 (630)
247 1r8s_A ADP-ribosylation factor 95.3 0.033 1.1E-06 45.2 6.5 21 231-251 3-23 (164)
248 2v9p_A Replication protein E1; 95.3 0.015 5.1E-07 54.1 4.7 35 219-253 115-151 (305)
249 2j37_W Signal recognition part 95.2 0.026 9E-07 56.1 6.7 33 229-261 102-137 (504)
250 1gtv_A TMK, thymidylate kinase 95.2 0.0035 1.2E-07 54.1 0.2 23 231-253 3-25 (214)
251 1j8m_F SRP54, signal recogniti 95.2 0.041 1.4E-06 50.8 7.6 34 229-262 99-135 (297)
252 2ce2_X GTPase HRAS; signaling 95.2 0.021 7.2E-07 46.0 4.9 22 230-251 5-26 (166)
253 1u8z_A RAS-related protein RAL 95.2 0.025 8.6E-07 45.7 5.4 23 229-251 5-27 (168)
254 2wjy_A Regulator of nonsense t 95.2 0.016 5.5E-07 60.9 5.2 39 211-252 357-395 (800)
255 2ewv_A Twitching motility prot 95.2 0.0098 3.3E-07 56.8 3.2 46 203-253 116-161 (372)
256 1s96_A Guanylate kinase, GMP k 95.2 0.011 3.8E-07 52.2 3.3 25 229-253 17-41 (219)
257 1htw_A HI0065; nucleotide-bind 95.2 0.011 3.8E-07 49.5 3.1 23 230-252 35-57 (158)
258 1znw_A Guanylate kinase, GMP k 95.1 0.011 3.6E-07 51.3 3.1 24 230-253 22-45 (207)
259 1z6g_A Guanylate kinase; struc 95.1 0.011 3.9E-07 51.7 3.3 24 229-252 24-47 (218)
260 4gp7_A Metallophosphoesterase; 95.1 0.0092 3.1E-07 50.2 2.5 18 230-247 11-28 (171)
261 2erx_A GTP-binding protein DI- 95.1 0.026 9E-07 45.9 5.3 21 230-250 5-25 (172)
262 2i3b_A HCR-ntpase, human cance 95.1 0.012 4.1E-07 50.7 3.1 23 230-252 3-25 (189)
263 1c1y_A RAS-related protein RAP 95.0 0.025 8.7E-07 45.8 5.0 22 230-251 5-26 (167)
264 2a9k_A RAS-related protein RAL 95.0 0.033 1.1E-06 46.0 5.8 23 229-251 19-41 (187)
265 1cr0_A DNA primase/helicase; R 95.0 0.018 6E-07 52.6 4.3 33 229-261 36-72 (296)
266 3hdt_A Putative kinase; struct 95.0 0.012 4E-07 52.2 3.0 29 230-258 16-44 (223)
267 3eph_A TRNA isopentenyltransfe 95.0 0.0099 3.4E-07 57.5 2.5 31 229-259 3-33 (409)
268 1nlf_A Regulatory protein REPA 94.8 0.012 4.1E-07 53.4 2.7 24 229-252 31-54 (279)
269 2oil_A CATX-8, RAS-related pro 94.8 0.026 8.8E-07 47.5 4.6 23 229-251 26-48 (193)
270 2xzl_A ATP-dependent helicase 94.8 0.021 7.1E-07 60.0 4.8 38 211-251 361-398 (802)
271 3t1o_A Gliding protein MGLA; G 94.8 0.044 1.5E-06 45.7 6.0 24 229-252 15-38 (198)
272 3kta_A Chromosome segregation 94.8 0.014 4.8E-07 49.0 2.8 24 230-253 28-51 (182)
273 3b85_A Phosphate starvation-in 94.8 0.024 8.2E-07 49.6 4.4 32 218-251 14-45 (208)
274 2bov_A RAla, RAS-related prote 94.7 0.042 1.4E-06 46.4 5.8 23 229-251 15-37 (206)
275 2jeo_A Uridine-cytidine kinase 94.7 0.016 5.6E-07 51.5 3.2 25 231-255 28-52 (245)
276 1z0f_A RAB14, member RAS oncog 94.7 0.037 1.3E-06 45.4 5.2 24 229-252 16-39 (179)
277 1a7j_A Phosphoribulokinase; tr 94.7 0.014 4.8E-07 53.7 2.8 35 230-264 7-44 (290)
278 1g8f_A Sulfate adenylyltransfe 94.7 0.036 1.2E-06 55.2 5.9 34 230-263 397-435 (511)
279 3bh0_A DNAB-like replicative h 94.7 0.047 1.6E-06 50.6 6.4 33 230-262 70-105 (315)
280 4dsu_A GTPase KRAS, isoform 2B 94.7 0.029 9.8E-07 46.6 4.4 22 230-251 6-27 (189)
281 1w36_D RECD, exodeoxyribonucle 94.6 0.026 8.8E-07 57.4 4.8 25 228-252 164-188 (608)
282 3kl4_A SRP54, signal recogniti 94.6 0.024 8.3E-07 55.3 4.4 34 229-262 98-134 (433)
283 3tqf_A HPR(Ser) kinase; transf 94.6 0.014 4.8E-07 49.9 2.2 24 228-251 16-39 (181)
284 2wsm_A Hydrogenase expression/ 94.6 0.032 1.1E-06 48.1 4.6 25 228-252 30-54 (221)
285 1sky_E F1-ATPase, F1-ATP synth 94.5 0.022 7.4E-07 56.1 3.8 23 230-252 153-175 (473)
286 3lnc_A Guanylate kinase, GMP k 94.5 0.012 4.1E-07 51.7 1.7 23 230-252 29-52 (231)
287 1xjc_A MOBB protein homolog; s 94.5 0.039 1.3E-06 46.8 4.9 32 229-260 5-39 (169)
288 2ged_A SR-beta, signal recogni 94.5 0.03 1E-06 47.0 4.2 23 229-251 49-71 (193)
289 1vma_A Cell division protein F 94.5 0.031 1.1E-06 51.9 4.6 33 230-262 106-141 (306)
290 2axn_A 6-phosphofructo-2-kinas 94.5 0.029 9.8E-07 56.0 4.7 32 229-260 36-70 (520)
291 2hf9_A Probable hydrogenase ni 94.4 0.034 1.2E-06 48.1 4.5 36 217-252 27-62 (226)
292 1m8p_A Sulfate adenylyltransfe 94.4 0.025 8.6E-07 57.1 4.0 33 230-262 398-434 (573)
293 2p5s_A RAS and EF-hand domain 94.4 0.056 1.9E-06 45.8 5.6 23 229-251 29-51 (199)
294 3p32_A Probable GTPase RV1496/ 94.3 0.054 1.8E-06 51.1 6.0 32 230-261 81-115 (355)
295 2dyk_A GTP-binding protein; GT 94.3 0.023 8E-07 45.8 3.0 22 230-251 3-24 (161)
296 4edh_A DTMP kinase, thymidylat 94.3 0.023 8E-07 49.9 3.1 29 231-259 9-40 (213)
297 1odf_A YGR205W, hypothetical 3 94.2 0.045 1.5E-06 50.4 5.0 23 231-253 34-56 (290)
298 1np6_A Molybdopterin-guanine d 94.2 0.027 9.3E-07 47.9 3.2 24 229-252 7-30 (174)
299 1z2a_A RAS-related protein RAB 94.2 0.025 8.7E-07 45.9 2.9 22 230-251 7-28 (168)
300 2xau_A PRE-mRNA-splicing facto 94.2 0.097 3.3E-06 54.7 8.0 23 229-251 110-132 (773)
301 2f9l_A RAB11B, member RAS onco 94.2 0.024 8.2E-07 48.2 2.9 22 230-251 7-28 (199)
302 1nrj_B SR-beta, signal recogni 94.1 0.024 8.4E-07 48.7 2.9 24 229-252 13-36 (218)
303 2gf0_A GTP-binding protein DI- 94.1 0.052 1.8E-06 45.5 5.0 21 230-250 10-30 (199)
304 1f2t_A RAD50 ABC-ATPase; DNA d 94.1 0.023 8E-07 46.8 2.6 22 231-252 26-47 (149)
305 2h57_A ADP-ribosylation factor 94.1 0.019 6.5E-07 48.3 2.1 24 229-252 22-45 (190)
306 3v9p_A DTMP kinase, thymidylat 94.1 0.042 1.4E-06 48.8 4.4 30 231-260 28-64 (227)
307 3b9q_A Chloroplast SRP recepto 94.1 0.026 9E-07 52.3 3.2 23 230-252 102-124 (302)
308 1rj9_A FTSY, signal recognitio 94.1 0.027 9.2E-07 52.3 3.3 24 229-252 103-126 (304)
309 2oap_1 GSPE-2, type II secreti 94.1 0.026 8.8E-07 56.2 3.3 62 228-289 260-343 (511)
310 1fzq_A ADP-ribosylation factor 94.0 0.04 1.4E-06 46.1 4.0 22 230-251 18-39 (181)
311 1zu4_A FTSY; GTPase, signal re 94.0 0.045 1.5E-06 51.1 4.6 33 229-261 106-141 (320)
312 3vkw_A Replicase large subunit 94.0 0.027 9.2E-07 55.1 3.2 22 230-251 163-184 (446)
313 1ek0_A Protein (GTP-binding pr 94.0 0.029 1E-06 45.5 2.9 22 230-251 5-26 (170)
314 1oix_A RAS-related protein RAB 94.0 0.024 8.2E-07 48.1 2.5 23 230-252 31-53 (191)
315 2yhs_A FTSY, cell division pro 93.9 0.047 1.6E-06 54.1 4.7 30 230-259 295-327 (503)
316 1z0j_A RAB-22, RAS-related pro 93.9 0.032 1.1E-06 45.4 3.0 23 230-252 8-30 (170)
317 2pt7_A CAG-ALFA; ATPase, prote 93.9 0.032 1.1E-06 52.3 3.3 64 227-290 170-251 (330)
318 2j9r_A Thymidine kinase; TK1, 93.8 0.064 2.2E-06 47.2 5.0 63 231-293 31-115 (214)
319 3aez_A Pantothenate kinase; tr 93.8 0.032 1.1E-06 52.0 3.2 23 231-253 93-115 (312)
320 1wms_A RAB-9, RAB9, RAS-relate 93.8 0.032 1.1E-06 45.8 3.0 22 230-251 9-30 (177)
321 1z08_A RAS-related protein RAB 93.8 0.033 1.1E-06 45.3 3.0 22 230-251 8-29 (170)
322 2r6a_A DNAB helicase, replicat 93.8 0.054 1.8E-06 52.9 5.0 33 230-262 205-241 (454)
323 2nzj_A GTP-binding protein REM 93.8 0.031 1.1E-06 45.8 2.8 21 230-250 6-26 (175)
324 4i1u_A Dephospho-COA kinase; s 93.8 0.028 9.7E-07 49.4 2.7 31 230-261 11-41 (210)
325 2wji_A Ferrous iron transport 93.8 0.03 1E-06 46.0 2.7 21 230-250 5-25 (165)
326 3e70_C DPA, signal recognition 93.8 0.032 1.1E-06 52.4 3.1 30 230-259 131-163 (328)
327 2onk_A Molybdate/tungstate ABC 93.8 0.029 1E-06 50.1 2.8 24 230-253 26-49 (240)
328 1sq5_A Pantothenate kinase; P- 93.8 0.045 1.5E-06 50.6 4.1 23 231-253 83-105 (308)
329 1bif_A 6-phosphofructo-2-kinas 93.7 0.018 6.2E-07 56.5 1.4 25 229-253 40-64 (469)
330 1yrb_A ATP(GTP)binding protein 93.7 0.06 2E-06 47.7 4.8 33 230-262 16-50 (262)
331 1ky3_A GTP-binding protein YPT 93.7 0.035 1.2E-06 45.7 3.0 23 229-251 9-31 (182)
332 1r2q_A RAS-related protein RAB 93.7 0.035 1.2E-06 45.0 2.9 21 230-250 8-28 (170)
333 2qm8_A GTPase/ATPase; G protei 93.7 0.064 2.2E-06 50.3 5.0 35 218-252 43-79 (337)
334 1g16_A RAS-related protein SEC 93.7 0.03 1E-06 45.6 2.4 22 230-251 5-26 (170)
335 2il1_A RAB12; G-protein, GDP, 93.6 0.052 1.8E-06 45.8 4.0 21 230-250 28-48 (192)
336 3tif_A Uncharacterized ABC tra 93.6 0.027 9.1E-07 50.2 2.2 25 229-253 32-56 (235)
337 2obl_A ESCN; ATPase, hydrolase 93.6 0.061 2.1E-06 50.8 4.8 39 218-257 60-100 (347)
338 2gza_A Type IV secretion syste 93.6 0.036 1.2E-06 52.6 3.2 27 227-253 174-200 (361)
339 1p5z_B DCK, deoxycytidine kina 93.6 0.015 5.3E-07 52.2 0.7 24 230-253 26-49 (263)
340 2ocp_A DGK, deoxyguanosine kin 93.6 0.037 1.3E-06 48.9 3.2 24 230-253 4-27 (241)
341 2pcj_A ABC transporter, lipopr 93.6 0.024 8.1E-07 50.1 1.8 24 230-253 32-55 (224)
342 3sop_A Neuronal-specific septi 93.6 0.03 1E-06 51.0 2.5 23 230-252 4-26 (270)
343 2zej_A Dardarin, leucine-rich 93.6 0.029 9.9E-07 47.1 2.2 21 230-250 4-24 (184)
344 1lw7_A Transcriptional regulat 93.6 0.031 1.1E-06 52.8 2.7 27 229-255 171-197 (365)
345 2cbz_A Multidrug resistance-as 93.5 0.028 9.7E-07 50.0 2.2 24 229-252 32-55 (237)
346 3bc1_A RAS-related protein RAB 93.5 0.038 1.3E-06 45.9 2.9 23 229-251 12-34 (195)
347 3q85_A GTP-binding protein REM 93.5 0.037 1.3E-06 45.1 2.7 19 231-249 5-23 (169)
348 2q6t_A DNAB replication FORK h 93.5 0.057 1.9E-06 52.6 4.4 33 230-262 202-238 (444)
349 1upt_A ARL1, ADP-ribosylation 93.5 0.04 1.4E-06 44.9 2.9 21 230-250 9-29 (171)
350 1sgw_A Putative ABC transporte 93.5 0.031 1E-06 49.2 2.3 25 229-253 36-60 (214)
351 3clv_A RAB5 protein, putative; 93.4 0.04 1.4E-06 46.0 3.0 22 230-251 9-30 (208)
352 2hxs_A RAB-26, RAS-related pro 93.4 0.036 1.2E-06 45.6 2.6 21 230-250 8-28 (178)
353 2og2_A Putative signal recogni 93.4 0.041 1.4E-06 52.3 3.2 23 230-252 159-181 (359)
354 3tqc_A Pantothenate kinase; bi 93.4 0.042 1.4E-06 51.4 3.3 23 231-253 95-117 (321)
355 4a1f_A DNAB helicase, replicat 93.4 0.057 1.9E-06 50.9 4.1 33 230-262 48-83 (338)
356 3tmk_A Thymidylate kinase; pho 93.4 0.056 1.9E-06 47.6 3.8 30 230-259 7-36 (216)
357 2d2e_A SUFC protein; ABC-ATPas 93.3 0.038 1.3E-06 49.6 2.7 22 230-251 31-52 (250)
358 2hup_A RAS-related protein RAB 93.3 0.085 2.9E-06 44.9 4.9 23 229-251 30-52 (201)
359 1b0u_A Histidine permease; ABC 93.3 0.033 1.1E-06 50.5 2.3 24 230-253 34-57 (262)
360 2wjg_A FEOB, ferrous iron tran 93.3 0.041 1.4E-06 45.8 2.7 22 230-251 9-30 (188)
361 2efe_B Small GTP-binding prote 93.3 0.047 1.6E-06 45.0 3.0 23 229-251 13-35 (181)
362 2y8e_A RAB-protein 6, GH09086P 93.3 0.037 1.3E-06 45.4 2.4 22 230-251 16-37 (179)
363 2zu0_C Probable ATP-dependent 93.2 0.04 1.4E-06 50.0 2.8 24 229-252 47-70 (267)
364 1g6h_A High-affinity branched- 93.2 0.033 1.1E-06 50.2 2.2 24 230-253 35-58 (257)
365 1mv5_A LMRA, multidrug resista 93.2 0.034 1.2E-06 49.6 2.3 23 230-252 30-52 (243)
366 2dpy_A FLII, flagellum-specifi 93.2 0.079 2.7E-06 51.7 5.0 38 218-256 146-185 (438)
367 2pze_A Cystic fibrosis transme 93.2 0.036 1.2E-06 49.1 2.3 25 229-253 35-59 (229)
368 1ji0_A ABC transporter; ATP bi 93.1 0.036 1.2E-06 49.4 2.2 24 230-253 34-57 (240)
369 3q72_A GTP-binding protein RAD 93.1 0.036 1.2E-06 45.0 2.1 21 230-250 4-24 (166)
370 2gks_A Bifunctional SAT/APS ki 93.1 0.11 3.9E-06 52.0 6.1 33 230-262 374-409 (546)
371 3con_A GTPase NRAS; structural 93.1 0.049 1.7E-06 45.5 2.9 22 230-251 23-44 (190)
372 2xxa_A Signal recognition part 93.1 0.076 2.6E-06 51.7 4.7 35 229-263 101-139 (433)
373 3cr8_A Sulfate adenylyltranfer 93.1 0.047 1.6E-06 54.9 3.2 32 231-262 372-407 (552)
374 2lkc_A Translation initiation 93.1 0.048 1.7E-06 44.8 2.8 22 229-250 9-30 (178)
375 2ff7_A Alpha-hemolysin translo 93.0 0.037 1.3E-06 49.6 2.2 25 229-253 36-60 (247)
376 2fn4_A P23, RAS-related protei 93.0 0.043 1.5E-06 45.1 2.5 23 229-251 10-32 (181)
377 2olj_A Amino acid ABC transpor 93.0 0.038 1.3E-06 50.1 2.3 25 229-253 51-75 (263)
378 3tw8_B RAS-related protein RAB 93.0 0.047 1.6E-06 44.8 2.7 21 230-250 11-31 (181)
379 2qi9_C Vitamin B12 import ATP- 93.0 0.038 1.3E-06 49.7 2.3 24 230-253 28-51 (249)
380 3gfo_A Cobalt import ATP-bindi 93.0 0.038 1.3E-06 50.5 2.3 24 230-253 36-59 (275)
381 2g6b_A RAS-related protein RAB 93.0 0.053 1.8E-06 44.6 2.9 22 230-251 12-33 (180)
382 2bme_A RAB4A, RAS-related prot 92.9 0.044 1.5E-06 45.5 2.4 23 229-251 11-33 (186)
383 3kkq_A RAS-related protein M-R 92.9 0.054 1.8E-06 44.9 2.9 22 230-251 20-41 (183)
384 2gf9_A RAS-related protein RAB 92.9 0.053 1.8E-06 45.4 2.9 23 229-251 23-45 (189)
385 1mh1_A RAC1; GTP-binding, GTPa 92.9 0.054 1.9E-06 44.7 2.9 22 230-251 7-28 (186)
386 1vpl_A ABC transporter, ATP-bi 92.9 0.041 1.4E-06 49.7 2.3 24 230-253 43-66 (256)
387 1m7b_A RND3/RHOE small GTP-bin 92.9 0.046 1.6E-06 45.7 2.4 22 230-251 9-30 (184)
388 2ghi_A Transport protein; mult 92.9 0.041 1.4E-06 49.7 2.2 25 229-253 47-71 (260)
389 1z47_A CYSA, putative ABC-tran 92.8 0.048 1.7E-06 51.7 2.7 24 230-253 43-66 (355)
390 4g1u_C Hemin import ATP-bindin 92.8 0.044 1.5E-06 49.8 2.3 24 230-253 39-62 (266)
391 2ixe_A Antigen peptide transpo 92.8 0.042 1.4E-06 50.0 2.2 25 229-253 46-70 (271)
392 3thx_A DNA mismatch repair pro 92.8 0.14 4.8E-06 54.6 6.5 65 229-293 663-755 (934)
393 3tkl_A RAS-related protein RAB 92.8 0.057 2E-06 45.2 2.9 22 230-251 18-39 (196)
394 1x3s_A RAS-related protein RAB 92.8 0.058 2E-06 45.0 2.9 23 229-251 16-38 (195)
395 2ihy_A ABC transporter, ATP-bi 92.7 0.044 1.5E-06 50.1 2.3 24 230-253 49-72 (279)
396 2gj8_A MNME, tRNA modification 92.7 0.046 1.6E-06 45.4 2.2 22 230-251 6-27 (172)
397 3bwd_D RAC-like GTP-binding pr 92.7 0.059 2E-06 44.4 2.9 23 229-251 9-31 (182)
398 3qks_A DNA double-strand break 92.7 0.058 2E-06 46.7 3.0 25 230-254 25-49 (203)
399 2yz2_A Putative ABC transporte 92.7 0.044 1.5E-06 49.7 2.2 25 229-253 34-58 (266)
400 2nq2_C Hypothetical ABC transp 92.7 0.044 1.5E-06 49.3 2.2 24 230-253 33-56 (253)
401 2it1_A 362AA long hypothetical 92.7 0.052 1.8E-06 51.7 2.8 24 230-253 31-54 (362)
402 3b1v_A Ferrous iron uptake tra 92.7 0.19 6.7E-06 45.5 6.6 21 230-250 5-25 (272)
403 3fvq_A Fe(3+) IONS import ATP- 92.7 0.044 1.5E-06 52.1 2.2 24 230-253 32-55 (359)
404 3c5c_A RAS-like protein 12; GD 92.7 0.061 2.1E-06 45.2 3.0 22 230-251 23-44 (187)
405 1z06_A RAS-related protein RAB 92.7 0.061 2.1E-06 45.0 3.0 23 229-251 21-43 (189)
406 3lv8_A DTMP kinase, thymidylat 92.7 0.052 1.8E-06 48.4 2.6 23 230-252 29-51 (236)
407 3bgw_A DNAB-like replicative h 92.6 0.078 2.7E-06 51.8 4.0 32 231-262 200-234 (444)
408 1vg8_A RAS-related protein RAB 92.6 0.062 2.1E-06 45.5 3.0 23 229-251 9-31 (207)
409 2yyz_A Sugar ABC transporter, 92.6 0.053 1.8E-06 51.5 2.7 24 230-253 31-54 (359)
410 1zd9_A ADP-ribosylation factor 92.6 0.062 2.1E-06 45.1 2.9 22 230-251 24-45 (188)
411 1v43_A Sugar-binding transport 92.6 0.054 1.9E-06 51.7 2.8 23 230-252 39-61 (372)
412 2iwr_A Centaurin gamma 1; ANK 92.6 0.047 1.6E-06 45.0 2.1 22 230-251 9-30 (178)
413 3rlf_A Maltose/maltodextrin im 92.6 0.055 1.9E-06 51.9 2.8 24 230-253 31-54 (381)
414 2atv_A RERG, RAS-like estrogen 92.6 0.064 2.2E-06 45.2 3.0 23 229-251 29-51 (196)
415 1svi_A GTP-binding protein YSX 92.6 0.046 1.6E-06 45.8 2.0 23 229-251 24-46 (195)
416 2cxx_A Probable GTP-binding pr 92.6 0.046 1.6E-06 45.4 2.0 22 230-251 3-24 (190)
417 2pjz_A Hypothetical protein ST 92.5 0.049 1.7E-06 49.4 2.3 24 229-252 31-54 (263)
418 1ls1_A Signal recognition part 92.5 0.11 3.8E-06 47.7 4.8 33 229-261 99-134 (295)
419 2a5j_A RAS-related protein RAB 92.5 0.063 2.2E-06 45.1 2.9 23 229-251 22-44 (191)
420 1g29_1 MALK, maltose transport 92.5 0.055 1.9E-06 51.6 2.7 24 230-253 31-54 (372)
421 3ihw_A Centg3; RAS, centaurin, 92.5 0.069 2.3E-06 44.9 3.0 22 230-251 22-43 (184)
422 3reg_A RHO-like small GTPase; 92.5 0.066 2.3E-06 45.0 2.9 23 229-251 24-46 (194)
423 3cph_A RAS-related protein SEC 92.5 0.066 2.2E-06 45.5 2.9 23 229-251 21-43 (213)
424 1m2o_B GTP-binding protein SAR 92.4 0.056 1.9E-06 45.6 2.4 22 229-250 24-45 (190)
425 2fg5_A RAB-22B, RAS-related pr 92.4 0.058 2E-06 45.4 2.5 23 229-251 24-46 (192)
426 2f1r_A Molybdopterin-guanine d 92.4 0.029 1E-06 47.5 0.5 24 230-253 4-27 (171)
427 2www_A Methylmalonic aciduria 92.3 0.07 2.4E-06 50.3 3.1 22 231-252 77-98 (349)
428 3dz8_A RAS-related protein RAB 92.3 0.059 2E-06 45.2 2.4 23 230-252 25-47 (191)
429 4ag6_A VIRB4 ATPase, type IV s 92.3 0.13 4.6E-06 48.8 5.1 34 229-262 36-72 (392)
430 1zbd_A Rabphilin-3A; G protein 92.3 0.067 2.3E-06 45.2 2.7 23 229-251 9-31 (203)
431 3t5g_A GTP-binding protein RHE 92.3 0.061 2.1E-06 44.4 2.4 22 229-250 7-28 (181)
432 3thx_B DNA mismatch repair pro 92.2 0.12 4.2E-06 54.9 5.2 65 229-293 674-766 (918)
433 1tf7_A KAIC; homohexamer, hexa 92.2 0.11 3.7E-06 51.7 4.5 32 230-261 283-317 (525)
434 2fu5_C RAS-related protein RAB 92.2 0.045 1.6E-06 45.3 1.5 23 229-251 9-31 (183)
435 2bcg_Y Protein YP2, GTP-bindin 92.2 0.062 2.1E-06 45.6 2.4 23 229-251 9-31 (206)
436 3ld9_A DTMP kinase, thymidylat 92.2 0.078 2.7E-06 46.9 3.1 28 231-258 24-55 (223)
437 1pui_A ENGB, probable GTP-bind 92.2 0.026 8.9E-07 48.1 -0.0 22 230-251 28-49 (210)
438 3pqc_A Probable GTP-binding pr 92.1 0.057 2E-06 45.0 2.0 23 229-251 24-46 (195)
439 4tmk_A Protein (thymidylate ki 92.1 0.071 2.4E-06 46.7 2.7 23 230-252 5-27 (213)
440 3oes_A GTPase rhebl1; small GT 92.1 0.066 2.3E-06 45.4 2.4 23 229-251 25-47 (201)
441 2fh5_B SR-beta, signal recogni 92.1 0.079 2.7E-06 45.3 2.9 23 229-251 8-30 (214)
442 3d31_A Sulfate/molybdate ABC t 92.0 0.047 1.6E-06 51.7 1.5 24 230-253 28-51 (348)
443 1ksh_A ARF-like protein 2; sma 91.9 0.074 2.5E-06 44.2 2.6 22 229-250 19-40 (186)
444 3lxx_A GTPase IMAP family memb 91.9 0.078 2.7E-06 46.6 2.8 23 229-251 30-52 (239)
445 1q57_A DNA primase/helicase; d 91.9 0.083 2.8E-06 52.1 3.2 32 231-262 245-280 (503)
446 2zpa_A Uncharacterized protein 91.9 0.42 1.4E-05 49.0 8.5 76 216-292 180-268 (671)
447 2ffh_A Protein (FFH); SRP54, s 91.9 0.13 4.6E-06 49.9 4.6 34 229-262 99-135 (425)
448 2rcn_A Probable GTPase ENGC; Y 91.8 0.077 2.6E-06 50.4 2.8 25 229-253 216-240 (358)
449 1gwn_A RHO-related GTP-binding 91.7 0.075 2.6E-06 45.6 2.4 23 229-251 29-51 (205)
450 3k53_A Ferrous iron transport 91.7 0.069 2.3E-06 48.1 2.2 23 229-251 4-26 (271)
451 4hlc_A DTMP kinase, thymidylat 91.7 0.17 5.7E-06 44.0 4.7 29 231-259 5-35 (205)
452 2cjw_A GTP-binding protein GEM 91.7 0.092 3.1E-06 44.5 2.9 21 230-250 8-28 (192)
453 1qde_A EIF4A, translation init 91.6 0.29 9.8E-06 42.1 6.1 17 228-244 51-67 (224)
454 1gm5_A RECG; helicase, replica 91.6 0.34 1.2E-05 50.6 7.6 24 226-249 387-410 (780)
455 1tq4_A IIGP1, interferon-induc 91.6 0.13 4.4E-06 49.8 4.1 22 231-252 72-93 (413)
456 3qf7_A RAD50; ABC-ATPase, ATPa 91.6 0.095 3.3E-06 49.7 3.1 23 230-252 25-47 (365)
457 2q3h_A RAS homolog gene family 91.6 0.092 3.1E-06 44.3 2.7 22 229-250 21-42 (201)
458 2atx_A Small GTP binding prote 91.5 0.084 2.9E-06 44.3 2.5 23 229-251 19-41 (194)
459 2ew1_A RAS-related protein RAB 91.5 0.082 2.8E-06 45.3 2.4 23 229-251 27-49 (201)
460 1moz_A ARL1, ADP-ribosylation 91.5 0.051 1.8E-06 44.9 1.1 21 229-249 19-39 (183)
461 2orv_A Thymidine kinase; TP4A 91.5 0.39 1.3E-05 42.7 6.9 62 231-292 22-103 (234)
462 2npi_A Protein CLP1; CLP1-PCF1 91.5 0.073 2.5E-06 52.3 2.3 24 229-252 139-162 (460)
463 1zj6_A ADP-ribosylation factor 91.5 0.079 2.7E-06 44.2 2.2 22 229-250 17-38 (187)
464 2p67_A LAO/AO transport system 91.5 0.14 4.8E-06 47.9 4.2 23 230-252 58-80 (341)
465 2f7s_A C25KG, RAS-related prot 91.4 0.094 3.2E-06 44.9 2.7 21 230-250 27-47 (217)
466 4dzz_A Plasmid partitioning pr 91.4 0.31 1.1E-05 41.1 6.1 57 231-287 4-83 (206)
467 2fv8_A H6, RHO-related GTP-bin 91.4 0.087 3E-06 44.9 2.5 22 229-250 26-47 (207)
468 2yv5_A YJEQ protein; hydrolase 91.4 0.091 3.1E-06 48.4 2.7 24 229-253 166-189 (302)
469 1knx_A Probable HPR(Ser) kinas 91.4 0.073 2.5E-06 49.6 2.1 24 227-250 146-169 (312)
470 2bbs_A Cystic fibrosis transme 91.4 0.066 2.2E-06 49.3 1.7 24 229-252 65-88 (290)
471 1oxx_K GLCV, glucose, ABC tran 91.3 0.047 1.6E-06 51.8 0.7 23 230-252 33-55 (353)
472 1u0l_A Probable GTPase ENGC; p 91.3 0.074 2.5E-06 49.0 2.0 26 229-254 170-195 (301)
473 3gd7_A Fusion complex of cysti 91.3 0.077 2.6E-06 51.0 2.2 24 229-252 48-71 (390)
474 3iqw_A Tail-anchored protein t 91.3 0.33 1.1E-05 45.5 6.5 45 228-275 16-63 (334)
475 4bas_A ADP-ribosylation factor 91.3 0.099 3.4E-06 43.8 2.7 22 229-250 18-39 (199)
476 1qhl_A Protein (cell division 91.3 0.042 1.4E-06 48.8 0.3 23 231-253 30-52 (227)
477 2vp4_A Deoxynucleoside kinase; 91.3 0.087 3E-06 46.2 2.4 28 231-259 23-50 (230)
478 1ko7_A HPR kinase/phosphatase; 91.3 0.098 3.3E-06 48.8 2.8 24 228-251 144-167 (314)
479 2qag_B Septin-6, protein NEDD5 91.2 0.096 3.3E-06 50.9 2.8 21 231-251 45-65 (427)
480 3cpj_B GTP-binding protein YPT 91.2 0.11 3.7E-06 45.0 2.9 22 230-251 15-36 (223)
481 2o52_A RAS-related protein RAB 91.2 0.085 2.9E-06 44.8 2.2 22 229-250 26-47 (200)
482 3cbq_A GTP-binding protein REM 91.2 0.08 2.8E-06 44.9 2.1 20 230-249 25-44 (195)
483 4gzl_A RAS-related C3 botulinu 91.2 0.087 3E-06 44.9 2.3 23 229-251 31-53 (204)
484 3gj0_A GTP-binding nuclear pro 91.2 0.078 2.7E-06 45.7 1.9 22 230-251 17-39 (221)
485 2gco_A H9, RHO-related GTP-bin 91.1 0.094 3.2E-06 44.5 2.4 23 229-251 26-48 (201)
486 1tf7_A KAIC; homohexamer, hexa 91.1 0.17 5.7E-06 50.3 4.6 35 229-263 40-78 (525)
487 2h17_A ADP-ribosylation factor 91.1 0.076 2.6E-06 44.1 1.8 22 229-250 22-43 (181)
488 1f6b_A SAR1; gtpases, N-termin 91.0 0.074 2.5E-06 45.2 1.6 21 230-250 27-47 (198)
489 2j0v_A RAC-like GTP-binding pr 91.0 0.1 3.4E-06 44.5 2.4 22 230-251 11-32 (212)
490 2qu8_A Putative nucleolar GTP- 91.0 0.093 3.2E-06 45.6 2.2 23 229-251 30-52 (228)
491 3tui_C Methionine import ATP-b 90.9 0.11 3.8E-06 49.5 2.8 24 230-253 56-79 (366)
492 2j1l_A RHO-related GTP-binding 90.9 0.098 3.3E-06 45.0 2.3 21 230-250 36-56 (214)
493 2b6h_A ADP-ribosylation factor 90.9 0.092 3.2E-06 44.3 2.1 22 229-250 30-51 (192)
494 3e2i_A Thymidine kinase; Zn-bi 90.8 0.22 7.4E-06 43.9 4.5 62 232-293 32-115 (219)
495 3llm_A ATP-dependent RNA helic 90.8 0.24 8.1E-06 43.4 4.7 22 228-249 76-97 (235)
496 2gxq_A Heat resistant RNA depe 90.8 0.24 8.3E-06 41.9 4.7 24 228-251 38-62 (207)
497 3q3j_B RHO-related GTP-binding 90.7 0.13 4.4E-06 44.3 2.9 22 230-251 29-50 (214)
498 3qkt_A DNA double-strand break 90.7 0.11 3.8E-06 48.5 2.6 22 231-252 26-47 (339)
499 3hjn_A DTMP kinase, thymidylat 90.6 0.24 8.3E-06 42.6 4.6 31 231-261 3-36 (197)
500 1t6n_A Probable ATP-dependent 90.6 0.38 1.3E-05 41.2 5.9 22 228-249 51-72 (220)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.7e-20 Score=182.21 Aligned_cols=122 Identities=28% Similarity=0.373 Sum_probs=101.1
Q ss_pred CCCccccccCChhHHHHHHHHHHh-------------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC--
Q 035959 202 HPSTFDTLAMDTDMKKMIMDDLER-------------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG-- 266 (338)
Q Consensus 202 ~p~~f~~l~~~~~~k~~i~~~l~~-------------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~-- 266 (338)
+.-+|+++++-++.|+++.+.+.- ++++|+|||||||||||++|+|+|++++.+++.++++++.+
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~ 222 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKY 222 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccc
Confidence 345899999999999988887765 46799999999999999999999999999999999998874
Q ss_pred ----chHHHHHHHhc--CCCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcCC
Q 035959 267 ----NKHLRKVLIAT--ENKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSS 331 (338)
Q Consensus 267 ----~~~l~~~l~~~--~~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s~ 331 (338)
+..++.+|..+ .+||||||||||+++. .|..... +.+...++++++||+.|||+.+.
T Consensus 223 vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~--~R~~~~~------~~~~~~~~~l~~lL~~lDg~~~~ 285 (405)
T 4b4t_J 223 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGS--TRVEGSG------GGDSEVQRTMLELLNQLDGFETS 285 (405)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTT--SCSCSSS------GGGGHHHHHHHHHHHHHHTTTCC
T ss_pred cchHHHHHHHHHHHHHHhCCceEeeecchhhcc--CCCCCCC------CCcHHHHHHHHHHHHhhhccCCC
Confidence 45678888776 3799999999999987 5543322 11345678999999999999865
No 2
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.82 E-value=1.9e-20 Score=183.67 Aligned_cols=125 Identities=27% Similarity=0.331 Sum_probs=103.9
Q ss_pred CCCCccccccCChhHHHHHHHHHHh-------------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC-
Q 035959 201 DHPSTFDTLAMDTDMKKMIMDDLER-------------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG- 266 (338)
Q Consensus 201 ~~p~~f~~l~~~~~~k~~i~~~l~~-------------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~- 266 (338)
.+..+|+++++-++.|+++.+.+.. ++++|+|||||||||||++|+|+|++++.+++.++++++.+
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~ 245 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHK 245 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCS
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhcc
Confidence 3345899999999999999888775 57899999999999999999999999999999999998764
Q ss_pred -----chHHHHHHHhc--CCCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcCCCC
Q 035959 267 -----NKHLRKVLIAT--ENKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSSCG 333 (338)
Q Consensus 267 -----~~~l~~~l~~~--~~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s~~g 333 (338)
...++.+|..+ ..||||||||+|+++. .|..... ..+...++++++||+.|||+.+.++
T Consensus 246 ~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~--~R~~~~~------~~~~~~~r~l~~lL~~ldg~~~~~~ 311 (428)
T 4b4t_K 246 YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIAT--KRFDAQT------GSDREVQRILIELLTQMDGFDQSTN 311 (428)
T ss_dssp SCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHC--SCSSSCS------CCCCHHHHHHHHHHHHHHHSCSSCS
T ss_pred ccchhHHHHHHHHHHHHHcCCCeeechhhhhhhc--cccCCCC------CCChHHHHHHHHHHHHhhCCCCCCC
Confidence 45678888766 3799999999999987 6644332 1234567899999999999987643
No 3
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.82 E-value=2.2e-20 Score=183.49 Aligned_cols=124 Identities=22% Similarity=0.324 Sum_probs=102.4
Q ss_pred CCCCCccccccCChhHHHHHHHHHHh-------------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLER-------------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG 266 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~-------------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~ 266 (338)
-.++.+|+++++.++.|+++.+.+.. ++++|+|||||||||||++|+|+|++++.+++.++++++.+
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~ 253 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQ 253 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCS
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhh
Confidence 35566999999999999999887665 56899999999999999999999999999999999998874
Q ss_pred ------chHHHHHHHhcC--CCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcCC
Q 035959 267 ------NKHLRKVLIATE--NKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSS 331 (338)
Q Consensus 267 ------~~~l~~~l~~~~--~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s~ 331 (338)
...++.+|..+. .||||||||||+++. +|.....+ .......+++.||+.|||+.+.
T Consensus 254 ~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~--~R~~~~~~------~~~~~~~~~~~lL~~ldg~~~~ 318 (434)
T 4b4t_M 254 MYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGT--KRFDSEKS------GDREVQRTMLELLNQLDGFSSD 318 (434)
T ss_dssp SCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHC--CCSSGGGG------TTHHHHHHHHHHHHHHTTSCSS
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEeecchhhhhh--ccCCCCCC------CchHHHHHHHHHHHHhhccCCC
Confidence 345777777654 799999999999987 66544331 1234578999999999999864
No 4
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.81 E-value=7e-20 Score=180.03 Aligned_cols=123 Identities=24% Similarity=0.330 Sum_probs=101.3
Q ss_pred CCCCccccccCChhHHHHHHHHHHh-------------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC-
Q 035959 201 DHPSTFDTLAMDTDMKKMIMDDLER-------------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG- 266 (338)
Q Consensus 201 ~~p~~f~~l~~~~~~k~~i~~~l~~-------------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~- 266 (338)
.+.-+|+++++-++.|+++.+.+.. ++++|+|||||||||||++|+|+|++++.+++.++++++.+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk 254 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDK 254 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCS
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccc
Confidence 3345899999999999998887765 46799999999999999999999999999999999998874
Q ss_pred -----chHHHHHHHhc--CCCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcCC
Q 035959 267 -----NKHLRKVLIAT--ENKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSS 331 (338)
Q Consensus 267 -----~~~l~~~l~~~--~~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s~ 331 (338)
...++.+|..+ ..||||||||||+++. .|..... ..+.....++++||+.|||+.+.
T Consensus 255 ~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~--~R~~~~~------~~~~~~~~~l~~lL~~lDg~~~~ 318 (437)
T 4b4t_L 255 YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGG--RRFSEGT------SADREIQRTLMELLTQMDGFDNL 318 (437)
T ss_dssp SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSC--CCSSSCC------SSTTHHHHHHHHHHHHHHSSSCT
T ss_pred cchHHHHHHHHHHHHHHhcCCceeeeeccccccc--ccccCCC------CcchHHHHHHHHHHHHhhcccCC
Confidence 34567777665 4899999999999987 6644332 12345678999999999999865
No 5
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.81 E-value=5.6e-20 Score=179.28 Aligned_cols=122 Identities=23% Similarity=0.296 Sum_probs=101.5
Q ss_pred CCCccccccCChhHHHHHHHHHHh-------------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC--
Q 035959 202 HPSTFDTLAMDTDMKKMIMDDLER-------------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG-- 266 (338)
Q Consensus 202 ~p~~f~~l~~~~~~k~~i~~~l~~-------------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~-- 266 (338)
+..+|+++++-++.|++|.+.+.. ++++|+|||||||||||++|+|+|++++.+++.++++++.+
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~ 256 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKY 256 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSS
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhcc
Confidence 345899999999999999888765 57899999999999999999999999999999999998874
Q ss_pred ----chHHHHHHHhc--CCCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcCC
Q 035959 267 ----NKHLRKVLIAT--ENKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSS 331 (338)
Q Consensus 267 ----~~~l~~~l~~~--~~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s~ 331 (338)
+..++.+|..+ .+||||||||||+++. .|..... ..+....+++++||+.|||+.+.
T Consensus 257 vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~--~R~~~~~------~~~~~~~~~l~~LL~~lDg~~~~ 319 (437)
T 4b4t_I 257 LGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGT--KRYDSNS------GGEREIQRTMLELLNQLDGFDDR 319 (437)
T ss_dssp SSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSC--CCSCSSC------SSCCHHHHHHHHHHHHHHHCCCS
T ss_pred CchHHHHHHHHHHHHHhcCCcEEEEehhhhhcc--cCCCCCC------CccHHHHHHHHHHHHHhhCcCCC
Confidence 34567777766 3799999999999988 6644332 12345678999999999998754
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.78 E-value=5.7e-19 Score=173.64 Aligned_cols=123 Identities=22% Similarity=0.278 Sum_probs=100.8
Q ss_pred CCCCccccccCChhHHHHHHHHHHh-------------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC-
Q 035959 201 DHPSTFDTLAMDTDMKKMIMDDLER-------------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG- 266 (338)
Q Consensus 201 ~~p~~f~~l~~~~~~k~~i~~~l~~-------------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~- 266 (338)
.+.-+|+++++-++.|++|.+.+.. .+++|+|||||||||||++|+|+|++++.+++.++++++.+
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk 282 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQK 282 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCC
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcc
Confidence 3345899999999999999887654 56899999999999999999999999999999999998874
Q ss_pred -----chHHHHHHHhc--CCCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcCC
Q 035959 267 -----NKHLRKVLIAT--ENKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSS 331 (338)
Q Consensus 267 -----~~~l~~~l~~~--~~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s~ 331 (338)
+..++.+|..+ .+||||||||+|.++. .|..... +......++++.||+.|||..+.
T Consensus 283 ~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~--~R~~~~~------~~~~~~~~~l~~lL~~lDg~~~~ 346 (467)
T 4b4t_H 283 YVGEGARMVRELFEMARTKKACIIFFDEIDAVGG--ARFDDGA------GGDNEVQRTMLELITQLDGFDPR 346 (467)
T ss_dssp SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSB--CCSSSSC------GGGGHHHHHHHHHHHHHHSSCCT
T ss_pred cCCHHHHHHHHHHHHHHhcCCceEeecccccccc--cccCcCC------CccHHHHHHHHHHHHHhhccCCC
Confidence 45577777766 4899999999999987 6644322 11345578999999999998754
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.65 E-value=5.4e-17 Score=169.91 Aligned_cols=121 Identities=18% Similarity=0.345 Sum_probs=93.3
Q ss_pred CCccccccCChhHHHHHHHHHHh-------------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcC----
Q 035959 203 PSTFDTLAMDTDMKKMIMDDLER-------------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVE---- 265 (338)
Q Consensus 203 p~~f~~l~~~~~~k~~i~~~l~~-------------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~---- 265 (338)
..+|+++++-++.|+.+.+.+.. .+++|+|||||||||||++++|+|++++.+++.++.+++.
T Consensus 473 ~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~v 552 (806)
T 3cf2_A 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF 552 (806)
T ss_dssp CCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTC
T ss_pred CCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhcccc
Confidence 34788999999999888877664 3568999999999999999999999999999999988764
Q ss_pred --CchHHHHHHHhcC--CCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcCC
Q 035959 266 --GNKHLRKVLIATE--NKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSS 331 (338)
Q Consensus 266 --~~~~l~~~l~~~~--~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s~ 331 (338)
++..++++|..+. .||||||||||+++. .|..... ..++..++++++||+.|||+.+.
T Consensus 553 Gese~~vr~lF~~Ar~~~P~IifiDEiDsl~~--~R~~~~~------~~~~~~~rv~~~lL~~mdg~~~~ 614 (806)
T 3cf2_A 553 GESEANVREIFDKARQAAPCVLFFDELDSIAK--ARGGNIG------DGGGAADRVINQILTEMDGMSTK 614 (806)
T ss_dssp SSCHHHHHHHHHHHHTTCSEEEECSCGGGCC----------------------CHHHHHHHHHHHSSCSS
T ss_pred chHHHHHHHHHHHHHHcCCceeechhhhHHhh--ccCCCCC------CCchHHHHHHHHHHHHHhCCCCC
Confidence 3567899998774 799999999999988 6643322 11346679999999999999764
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.64 E-value=1.6e-16 Score=166.33 Aligned_cols=117 Identities=26% Similarity=0.374 Sum_probs=98.0
Q ss_pred CccccccCChhHHHHHHHHHHh-------------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC----
Q 035959 204 STFDTLAMDTDMKKMIMDDLER-------------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG---- 266 (338)
Q Consensus 204 ~~f~~l~~~~~~k~~i~~~l~~-------------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~---- 266 (338)
-+|+++++-++.+++|.+.+.- .+++|+|||||||||||+|++|+|++++.+++.++++++.+
T Consensus 201 v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~g 280 (806)
T 3cf2_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG 280 (806)
T ss_dssp CCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTT
T ss_pred CChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccch
Confidence 4899999988888888877654 35689999999999999999999999999999999987653
Q ss_pred --chHHHHHHHhcC--CCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcCC
Q 035959 267 --NKHLRKVLIATE--NKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSS 331 (338)
Q Consensus 267 --~~~l~~~l~~~~--~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s~ 331 (338)
+..++.+|..+. .|+||||||||.+++ +|.+.. ....++++++||+.|||+.+.
T Consensus 281 ese~~lr~lF~~A~~~~PsIIfIDEiDal~~--~r~~~~---------~~~~~riv~~LL~~mdg~~~~ 338 (806)
T 3cf2_A 281 ESESNLRKAFEEAEKNAPAIIFIDELDAIAP--KREKTH---------GEVERRIVSQLLTLMDGLKQR 338 (806)
T ss_dssp HHHHHHHHHHHHHTTSCSEEEEEESGGGTCC--TTTTCC---------CTTHHHHHHHHHTHHHHCCGG
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEehhccccc--ccCCCC---------ChHHHHHHHHHHHHHhccccc
Confidence 456888888775 799999999999987 664332 245688999999999999754
No 9
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.62 E-value=2.1e-15 Score=142.81 Aligned_cols=119 Identities=24% Similarity=0.327 Sum_probs=94.9
Q ss_pred CCCccccccCChhHHHHHHHHHHh------------hhcCceeeeCCCCCCcHHHHHHHHHHh-CCcEEEEecCCcCC--
Q 035959 202 HPSTFDTLAMDTDMKKMIMDDLER------------AWKRGYLLFGPPGTGKSSLIAAMANYL-HFDVYDLELSSVEG-- 266 (338)
Q Consensus 202 ~p~~f~~l~~~~~~k~~i~~~l~~------------~~~~g~LL~GppGtGKT~l~~aia~~l-~~~~~~l~~~~~~~-- 266 (338)
++.+|+++++.++.|+.+.+.+.. ..++++|||||||||||++++++|+++ +.+++.++++++.+
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~ 86 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKW 86 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSS
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhh
Confidence 345899999999999999887754 234789999999999999999999999 88999999988653
Q ss_pred ----chHHHHHHHhc--CCCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcCC
Q 035959 267 ----NKHLRKVLIAT--ENKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSS 331 (338)
Q Consensus 267 ----~~~l~~~l~~~--~~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s~ 331 (338)
...++.++..+ .+++||||||||.+.. .|.... .....+.++.||+.|||+...
T Consensus 87 ~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~--~~~~~~---------~~~~~~~~~~ll~~ld~~~~~ 146 (322)
T 1xwi_A 87 LGESEKLVKNLFQLARENKPSIIFIDEIDSLCG--SRSENE---------SEAARRIKTEFLVQMQGVGVD 146 (322)
T ss_dssp CCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGC--CSSSCC---------TTHHHHHHHHHHHHHHCSSSC
T ss_pred hhHHHHHHHHHHHHHHhcCCcEEEeecHHHhcc--cccccc---------chHHHHHHHHHHHHHhccccc
Confidence 34566666654 4789999999999987 443321 234578899999999998653
No 10
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.61 E-value=1.3e-15 Score=144.10 Aligned_cols=126 Identities=21% Similarity=0.295 Sum_probs=95.9
Q ss_pred CCCCCccccccCChhHHHHHHHHHHh------------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC-
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLER------------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG- 266 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~------------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~- 266 (338)
..++.+|+++++.+..++.+.+.+.. ..++++|||||||||||++++++|++++.+++.++++++.+
T Consensus 11 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~ 90 (322)
T 3eie_A 11 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 90 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTT
T ss_pred cCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhc
Confidence 45566899999999999999988853 23468999999999999999999999999999999887643
Q ss_pred -----chHHHHHHHhc--CCCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcCCCCCcc
Q 035959 267 -----NKHLRKVLIAT--ENKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSSCGDER 336 (338)
Q Consensus 267 -----~~~l~~~l~~~--~~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s~~g~er 336 (338)
...++.++..+ .+++||||||||.+.. .|.... .......+..||+.|||+....++..
T Consensus 91 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~--~~~~~~---------~~~~~~~~~~ll~~l~~~~~~~~~v~ 156 (322)
T 3eie_A 91 WMGESEKLVKQLFAMARENKPSIIFIDQVDALTG--TRGEGE---------SEASRRIKTELLVQMNGVGNDSQGVL 156 (322)
T ss_dssp TGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSC--C---------------CCTHHHHHHHHHHHGGGGTSCCCEE
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEechhhhhhc--cCCCCc---------chHHHHHHHHHHHHhccccccCCceE
Confidence 23455666554 3679999999999987 443221 23557889999999999965444333
No 11
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.55 E-value=7.2e-15 Score=137.68 Aligned_cols=121 Identities=18% Similarity=0.341 Sum_probs=94.1
Q ss_pred CCCccccccCChhHHHHHHHHHHh-------------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcC---
Q 035959 202 HPSTFDTLAMDTDMKKMIMDDLER-------------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVE--- 265 (338)
Q Consensus 202 ~p~~f~~l~~~~~~k~~i~~~l~~-------------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~--- 265 (338)
++.+|+++++.++.++.+.+.+.. ..++++||+||||||||++++++|+.++.+++.+++.++.
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~ 89 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 89 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhh
Confidence 345899999999999998888765 2457899999999999999999999999999999887653
Q ss_pred ---CchHHHHHHHhc--CCCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcC
Q 035959 266 ---GNKHLRKVLIAT--ENKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWS 330 (338)
Q Consensus 266 ---~~~~l~~~l~~~--~~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s 330 (338)
....++.+|..+ ..++||||||||.+.. .|..... ...+.....++.||+.|||+..
T Consensus 90 ~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~--~~~~~~~------~~~~~~~~~~~~lL~~l~~~~~ 151 (301)
T 3cf0_A 90 FGESEANVREIFDKARQAAPCVLFFDELDSIAK--ARGGNIG------DGGGAADRVINQILTEMDGMST 151 (301)
T ss_dssp HTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHH--HHTTTTC------CSSCSCCHHHHHHHHHHHSSCT
T ss_pred cCchHHHHHHHHHHHHhcCCeEEEEEChHHHhh--ccCCCcC------CcchHHHHHHHHHHHHhhcccC
Confidence 234566777665 3689999999999976 4433211 0123446788999999999864
No 12
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.55 E-value=1.6e-14 Score=142.61 Aligned_cols=122 Identities=23% Similarity=0.314 Sum_probs=93.3
Q ss_pred CCCCccccccCChhHHHHHHHHHHh------------hhcCceeeeCCCCCCcHHHHHHHHHHh-CCcEEEEecCCcCC-
Q 035959 201 DHPSTFDTLAMDTDMKKMIMDDLER------------AWKRGYLLFGPPGTGKSSLIAAMANYL-HFDVYDLELSSVEG- 266 (338)
Q Consensus 201 ~~p~~f~~l~~~~~~k~~i~~~l~~------------~~~~g~LL~GppGtGKT~l~~aia~~l-~~~~~~l~~~~~~~- 266 (338)
.++.+|+++++.+..++.+.+.+.. ..++++||+||||||||++++++|+.+ +.+++.++++++.+
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~ 207 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK 207 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-----
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhh
Confidence 4456899999999999999887742 234789999999999999999999999 88999999887653
Q ss_pred -----chHHHHHHHhc--CCCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcCCCC
Q 035959 267 -----NKHLRKVLIAT--ENKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSSCG 333 (338)
Q Consensus 267 -----~~~l~~~l~~~--~~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s~~g 333 (338)
...++.+|..+ ..++||||||||.+.. .|.... .....+.++.||+.|||+....+
T Consensus 208 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~--~~~~~~---------~~~~~~~~~~lL~~l~~~~~~~~ 270 (444)
T 2zan_A 208 WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCG--SRSENE---------SEAARRIKTEFLVQMQGVGVDND 270 (444)
T ss_dssp ----CCCTHHHHHHHHHHSCSEEEEESCTTTTCC--CSSCCC---------CGGGHHHHHHHHTTTTCSSCCCS
T ss_pred hcchHHHHHHHHHHHHHHcCCeEEEEechHhhcc--CCCCcc---------ccHHHHHHHHHHHHHhCcccCCC
Confidence 33456666554 4789999999999987 443221 24567889999999999865333
No 13
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.55 E-value=5.8e-15 Score=141.65 Aligned_cols=119 Identities=22% Similarity=0.333 Sum_probs=90.4
Q ss_pred CCCCccccccCChhHHHHHHHHHHh------------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC--
Q 035959 201 DHPSTFDTLAMDTDMKKMIMDDLER------------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG-- 266 (338)
Q Consensus 201 ~~p~~f~~l~~~~~~k~~i~~~l~~------------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~-- 266 (338)
..+.+|+++++.++.++.+.+.+.. ..++++||+||||||||++++++|++++.+++.+++.++..
T Consensus 45 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~ 124 (355)
T 2qp9_X 45 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKW 124 (355)
T ss_dssp --CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhh
Confidence 3456899999999999998887754 12468999999999999999999999999999999876532
Q ss_pred ----chHHHHHHHhc--CCCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcC
Q 035959 267 ----NKHLRKVLIAT--ENKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWS 330 (338)
Q Consensus 267 ----~~~l~~~l~~~--~~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s 330 (338)
...++.++..+ ..++||||||||.+.. .|.... ....+..++.||..|||+..
T Consensus 125 ~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~--~r~~~~---------~~~~~~~~~~ll~~l~~~~~ 183 (355)
T 2qp9_X 125 MGESEKLVKQLFAMARENKPSIIFIDQVDALTG--TRGEGE---------SEASRRIKTELLVQMNGVGN 183 (355)
T ss_dssp ---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC-----------------CTHHHHHHHHHHHHHHHCC-
T ss_pred cchHHHHHHHHHHHHHHcCCeEEEEechHhhcc--cCCCCc---------chHHHHHHHHHHHHhhcccc
Confidence 34456666554 3789999999999987 443321 24557888999999999864
No 14
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.54 E-value=1.4e-14 Score=133.59 Aligned_cols=123 Identities=23% Similarity=0.289 Sum_probs=94.3
Q ss_pred CCCCCccccccCChhHHHHHHHHHHh-------------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLER-------------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG 266 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~-------------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~ 266 (338)
..++.+|+++++.++.++.+.+.+.. ..++++||+||||||||++++++|+.++.+++.+++.++..
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 89 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK 89 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHH
Confidence 34456899999999999999888765 24578999999999999999999999999999999988753
Q ss_pred ------chHHHHHHHhc--CCCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcC
Q 035959 267 ------NKHLRKVLIAT--ENKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWS 330 (338)
Q Consensus 267 ------~~~l~~~l~~~--~~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s 330 (338)
...+..++... ..++||||||||.+.. +|.+... +.....+..+..+|+.+|++..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~--~~~~~~~------~~~~~~~~~l~~ll~~~~~~~~ 153 (285)
T 3h4m_A 90 KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAA--KRTDALT------GGDREVQRTLMQLLAEMDGFDA 153 (285)
T ss_dssp CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHB--CCSSSCC------GGGGHHHHHHHHHHHHHHTTCS
T ss_pred hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcc--cCccccC------CccHHHHHHHHHHHHHhhCCCC
Confidence 23345555544 3679999999999976 4433211 1123456889999999998754
No 15
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.54 E-value=3.7e-14 Score=128.83 Aligned_cols=121 Identities=23% Similarity=0.329 Sum_probs=83.1
Q ss_pred CCccccccCChhHHHHHHHHHHh------------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC----
Q 035959 203 PSTFDTLAMDTDMKKMIMDDLER------------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG---- 266 (338)
Q Consensus 203 p~~f~~l~~~~~~k~~i~~~l~~------------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~---- 266 (338)
+.+|+++++.++.++.+.+.+.. ..++++||+||||||||++++++|++++.+++.++++++..
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 81 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGG 81 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTT
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccC
Confidence 35789999999998888765543 34578999999999999999999999999999999988753
Q ss_pred --chHHHHHHHhcC--CCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcC
Q 035959 267 --NKHLRKVLIATE--NKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWS 330 (338)
Q Consensus 267 --~~~l~~~l~~~~--~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s 330 (338)
...+..++..+. .++||+|||+|.+.. +|...... ......+..+..||+.+|++.+
T Consensus 82 ~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~--~~~~~~~~-----~~~~~~~~~l~~ll~~~~~~~~ 142 (262)
T 2qz4_A 82 LGAARVRSLFKEARARAPCIVYIDEIDAVGK--KRSTTMSG-----FSNTEEEQTLNQLLVEMDGMGT 142 (262)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEECC--------------------------CHHHHHHHHHHHTCCT
T ss_pred hhHHHHHHHHHHHHhcCCeEEEEeCcchhhc--cccccccC-----ccchhHHHHHHHHHHHhhCcCC
Confidence 234556665543 589999999999976 44322110 0123346788999999998754
No 16
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.53 E-value=3.8e-14 Score=131.60 Aligned_cols=120 Identities=23% Similarity=0.332 Sum_probs=90.8
Q ss_pred CCCCccccccCChhHHHHHHHHHHhh------------hcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC--
Q 035959 201 DHPSTFDTLAMDTDMKKMIMDDLERA------------WKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG-- 266 (338)
Q Consensus 201 ~~p~~f~~l~~~~~~k~~i~~~l~~~------------~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~-- 266 (338)
..+.+|+++++.++.++.+.+.+..+ .++++||+||||||||++++++|+.++.+++.++++++..
T Consensus 15 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~ 94 (297)
T 3b9p_A 15 GAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKY 94 (297)
T ss_dssp SSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcc
Confidence 45678999999999999998887552 3578999999999999999999999999999999988653
Q ss_pred ----chHHHHHHHhc--CCCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcCC
Q 035959 267 ----NKHLRKVLIAT--ENKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSS 331 (338)
Q Consensus 267 ----~~~l~~~l~~~--~~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s~ 331 (338)
...++.++... ..++||||||+|.+.. .|.... ........+.||+.+|++...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~--~~~~~~---------~~~~~~~~~~ll~~l~~~~~~ 154 (297)
T 3b9p_A 95 VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLS--ERSSSE---------HEASRRLKTEFLVEFDGLPGN 154 (297)
T ss_dssp CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSB--CC--------------CCSHHHHHHHHHHHHHCC--
T ss_pred cchHHHHHHHHHHHHHHcCCcEEEeccHHHhcc--ccccCc---------chHHHHHHHHHHHHHhccccc
Confidence 22344444443 4789999999999987 443221 123466778899999988653
No 17
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.51 E-value=1.9e-14 Score=134.50 Aligned_cols=95 Identities=17% Similarity=0.182 Sum_probs=67.1
Q ss_pred hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC------chHHHHHHHhc------CCCcEEEEcCCCccCC
Q 035959 226 AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG------NKHLRKVLIAT------ENKSILVVGDIDCCTE 293 (338)
Q Consensus 226 ~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~------~~~l~~~l~~~------~~~~Il~iDeiD~~~~ 293 (338)
..++++|||||||||||++++++|++++.+++.++++++.+ ...++.++..+ ..++||+|||||.+.+
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~ 113 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAG 113 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC----
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhcC
Confidence 34679999999999999999999999999999999887653 23456666555 2789999999999876
Q ss_pred cccccccccCCCCCCCCCCcchhhHHHHHHHhcCCc
Q 035959 294 LQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLW 329 (338)
Q Consensus 294 ~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~ 329 (338)
.+.+... .....+...+.||+.||++.
T Consensus 114 --~~~~~~~-------~~~~~~~v~~~Ll~~ld~~~ 140 (293)
T 3t15_A 114 --RMGGTTQ-------YTVNNQMVNATLMNIADNPT 140 (293)
T ss_dssp -------------------CHHHHHHHHHHHHHCCC
T ss_pred --CCCCCcc-------ccchHHHHHHHHHHHhcccc
Confidence 3332211 12245677899999999764
No 18
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.51 E-value=3.4e-14 Score=137.67 Aligned_cols=121 Identities=24% Similarity=0.325 Sum_probs=91.8
Q ss_pred cCCCCCccccccCChhHHHHHHHHHHhh------------hcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC
Q 035959 199 ILDHPSTFDTLAMDTDMKKMIMDDLERA------------WKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG 266 (338)
Q Consensus 199 ~~~~p~~f~~l~~~~~~k~~i~~~l~~~------------~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~ 266 (338)
...++.+|+++++.+..++.+.+.+..+ ..+++||+||||||||++|+++|+.++.+++.+++.++..
T Consensus 107 ~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 186 (389)
T 3vfd_A 107 DNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTS 186 (389)
T ss_dssp CCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC--
T ss_pred ccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhc
Confidence 4567889999999999999999888542 2478999999999999999999999999999999988753
Q ss_pred ------chHHHHHHHhc--CCCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcC
Q 035959 267 ------NKHLRKVLIAT--ENKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWS 330 (338)
Q Consensus 267 ------~~~l~~~l~~~--~~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s 330 (338)
...+..++..+ ..++||||||||.+.. .|.... .......+..||+.|||+..
T Consensus 187 ~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~--~~~~~~---------~~~~~~~~~~ll~~l~~~~~ 247 (389)
T 3vfd_A 187 KYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLC--ERREGE---------HDASRRLKTEFLIEFDGVQS 247 (389)
T ss_dssp -----CHHHHHHHHHHHHHSSSEEEEEETGGGGC-------------------CTHHHHHHHHHHHHHHHC-
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEECchhhcc--cCCCcc---------chHHHHHHHHHHHHhhcccc
Confidence 23345555544 3679999999999976 443221 23457888899999998865
No 19
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.51 E-value=4.7e-14 Score=140.27 Aligned_cols=120 Identities=25% Similarity=0.349 Sum_probs=91.5
Q ss_pred CCccccccCChhHHHHHHHHHHh------------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC----
Q 035959 203 PSTFDTLAMDTDMKKMIMDDLER------------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG---- 266 (338)
Q Consensus 203 p~~f~~l~~~~~~k~~i~~~l~~------------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~---- 266 (338)
..+|+++++.++.++++.+.+.. ..++|+||+||||||||++++++|+.++.+++.++++++..
T Consensus 12 ~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g 91 (476)
T 2ce7_A 12 RVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVG 91 (476)
T ss_dssp CCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTT
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhc
Confidence 45899999999988887776554 23578999999999999999999999999999999987653
Q ss_pred --chHHHHHHHhc--CCCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcC
Q 035959 267 --NKHLRKVLIAT--ENKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWS 330 (338)
Q Consensus 267 --~~~l~~~l~~~--~~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s 330 (338)
...++.+|..+ ..|+||||||||.+.. +|..... +.+.....+++.||+.|||+.+
T Consensus 92 ~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~--~r~~~~~------g~~~~~~~~l~~LL~~ld~~~~ 151 (476)
T 2ce7_A 92 VGAARVRDLFAQAKAHAPCIVFIDEIDAVGR--HRGAGLG------GGHDEREQTLNQLLVEMDGFDS 151 (476)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEETGGGTCC--C---------------CHHHHHHHHHHHHHHHSCG
T ss_pred ccHHHHHHHHHHHHhcCCCEEEEechhhhhh--hcccccC------cCcHHHHHHHHHHHHHHhccCC
Confidence 24566677665 3789999999999987 5543211 1133456789999999998754
No 20
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.50 E-value=9e-14 Score=126.63 Aligned_cols=123 Identities=24% Similarity=0.338 Sum_probs=93.3
Q ss_pred CCCCCccccccCChhHHHHHHHHHHh------------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC-
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLER------------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG- 266 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~------------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~- 266 (338)
...+.+|+++++.++.++.+.+.+.. ..+++++|+||||||||++++++|+.++.+++.+++.++..
T Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~ 84 (257)
T 1lv7_A 5 DQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 84 (257)
T ss_dssp CSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTS
T ss_pred cCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHH
Confidence 34567899999999998877765443 23578999999999999999999999999999999887653
Q ss_pred -----chHHHHHHHhcC--CCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcC
Q 035959 267 -----NKHLRKVLIATE--NKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWS 330 (338)
Q Consensus 267 -----~~~l~~~l~~~~--~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s 330 (338)
...+..++..+. .+++++|||||.+.. .|..... +........+..+|+.+||+..
T Consensus 85 ~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~--~~~~~~~------~~~~~~~~~~~~ll~~l~~~~~ 147 (257)
T 1lv7_A 85 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGR--QRGAGLG------GGHDEREQTLNQMLVEMDGFEG 147 (257)
T ss_dssp CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTC--CCSTTSC------CTTCHHHHHHHHHHHHHHTCCS
T ss_pred hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhcc--CCCCCcC------CCchHHHHHHHHHHHHhhCccc
Confidence 345667776653 578999999999976 4432211 1122345788999999999864
No 21
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.49 E-value=7.2e-14 Score=134.00 Aligned_cols=118 Identities=22% Similarity=0.343 Sum_probs=90.0
Q ss_pred CCCccccccCChhHHHHHHHHHHh------------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC---
Q 035959 202 HPSTFDTLAMDTDMKKMIMDDLER------------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG--- 266 (338)
Q Consensus 202 ~p~~f~~l~~~~~~k~~i~~~l~~------------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~--- 266 (338)
.+.+|+++++.+..++.+.+.+.. ..++++||+||||||||++++++|+.++.+++.++++++..
T Consensus 79 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~ 158 (357)
T 3d8b_A 79 PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWV 158 (357)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSST
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhcccc
Confidence 467899999999999999888764 23578999999999999999999999999999999988754
Q ss_pred ---chHHHHHHHhc--CCCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcC
Q 035959 267 ---NKHLRKVLIAT--ENKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWS 330 (338)
Q Consensus 267 ---~~~l~~~l~~~--~~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s 330 (338)
...++.++..+ ..++||||||||.+.. .|.... .......+..||..+||+..
T Consensus 159 g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~--~~~~~~---------~~~~~~~~~~lL~~l~~~~~ 216 (357)
T 3d8b_A 159 GEGEKMVRALFAVARCQQPAVIFIDEIDSLLS--QRGDGE---------HESSRRIKTEFLVQLDGATT 216 (357)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEETHHHHTB--C---------------CHHHHHHHHHHHHHHC---
T ss_pred chHHHHHHHHHHHHHhcCCeEEEEeCchhhhc--cCCCCc---------chHHHHHHHHHHHHHhcccc
Confidence 23345555444 4689999999999986 443211 23457888999999999864
No 22
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.46 E-value=1.3e-14 Score=132.77 Aligned_cols=123 Identities=27% Similarity=0.400 Sum_probs=85.5
Q ss_pred CCCccccccCChhHHHHHHHHHHh------------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC---
Q 035959 202 HPSTFDTLAMDTDMKKMIMDDLER------------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG--- 266 (338)
Q Consensus 202 ~p~~f~~l~~~~~~k~~i~~~l~~------------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~--- 266 (338)
.+.+|+++++.++.++.+.+.+.. ..++++||+||||||||++++++|+.++.+++.+++..+..
T Consensus 6 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~ 85 (268)
T 2r62_A 6 PNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFV 85 (268)
T ss_dssp CCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCS
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhc
Confidence 345789999998888888776653 23578999999999999999999999999999998876542
Q ss_pred ---chHHHHHHHhc--CCCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcCC
Q 035959 267 ---NKHLRKVLIAT--ENKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSS 331 (338)
Q Consensus 267 ---~~~l~~~l~~~--~~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s~ 331 (338)
...++.++..+ ..++||||||+|.+.. +|...... .........+..||+.+|+..+.
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~--~~~~~~~~-----~~~~~~~~~~~~ll~~l~~~~~~ 148 (268)
T 2r62_A 86 GLGASRVRDLFETAKKQAPSIIFIDEIDAIGK--SRAAGGVV-----SGNDEREQTLNQLLAEMDGFGSE 148 (268)
T ss_dssp SSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC-----------------CCCSCSSTTTTTTTTTCSSCS
T ss_pred chHHHHHHHHHHHHHhcCCeEEEEeChhhhcc--cccccccC-----CCchhHHHHHHHHHHHhhCcccC
Confidence 12233344433 3679999999999987 44322110 01123345678899999987653
No 23
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.44 E-value=7.4e-14 Score=139.47 Aligned_cols=118 Identities=25% Similarity=0.373 Sum_probs=93.9
Q ss_pred CCCccccccCChhHHHHHHHHHHh-------------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC--
Q 035959 202 HPSTFDTLAMDTDMKKMIMDDLER-------------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG-- 266 (338)
Q Consensus 202 ~p~~f~~l~~~~~~k~~i~~~l~~-------------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~-- 266 (338)
.+.+|+++++..+.++++.+.+.. ..++++||+||||||||++++++|+.++.+++.+++.++.+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 345789999999999988887765 34578999999999999999999999999999999887653
Q ss_pred ----chHHHHHHHhcC--CCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcC
Q 035959 267 ----NKHLRKVLIATE--NKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWS 330 (338)
Q Consensus 267 ----~~~l~~~l~~~~--~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s 330 (338)
...++.+|..+. .+++|||||||.+.. +|.... .......++.||+.||++..
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~--~~~~~~---------~~~~~~~~~~LL~~ld~~~~ 337 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAP--KREKTH---------GEVERRIVSQLLTLMDGLKQ 337 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCB--CTTSCC---------CHHHHHHHHHHHHHHHHSCT
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhcc--cccccc---------chHHHHHHHHHHHHhhcccc
Confidence 234666676653 678999999999987 443221 13456889999999998864
No 24
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.41 E-value=6.4e-13 Score=123.05 Aligned_cols=117 Identities=21% Similarity=0.321 Sum_probs=83.5
Q ss_pred CCccccccCChhHHHHHHHHHHh-------------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC---
Q 035959 203 PSTFDTLAMDTDMKKMIMDDLER-------------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG--- 266 (338)
Q Consensus 203 p~~f~~l~~~~~~k~~i~~~l~~-------------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~--- 266 (338)
..+|+++++.+++|+.+.+.+.. ..++|++|+||||||||+|++++|..++..++.++..++.+
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~ 85 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYV 85 (274)
T ss_dssp ------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTT
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhh
Confidence 34788999888888888776543 34578999999999999999999999999999999888753
Q ss_pred ---chHHHHHHHhc--CCCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcC
Q 035959 267 ---NKHLRKVLIAT--ENKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWS 330 (338)
Q Consensus 267 ---~~~l~~~l~~~--~~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s 330 (338)
...+..++... ..++++++||||.+.. .|.... .......++.+++.|||.-.
T Consensus 86 ~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~--~r~~~~---------~~~~~~~~~~~l~~Lsgg~~ 143 (274)
T 2x8a_A 86 GESERAVRQVFQRAKNSAPCVIFFDEVDALCP--RRSDRE---------TGASVRVVNQLLTEMDGLEA 143 (274)
T ss_dssp HHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC--------------------CTTHHHHHHHHHHTCCS
T ss_pred hHHHHHHHHHHHHHHhcCCCeEeeehhhhhhc--ccCCCc---------chHHHHHHHHHHHhhhcccc
Confidence 23466677664 4789999999999876 443211 12235678999999999854
No 25
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.39 E-value=1.9e-12 Score=122.24 Aligned_cols=99 Identities=21% Similarity=0.289 Sum_probs=82.9
Q ss_pred CccccccCCCCCccccccCChhHHHHHHHHHHhh-----hcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCCc
Q 035959 193 DTRQSAILDHPSTFDTLAMDTDMKKMIMDDLERA-----WKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGN 267 (338)
Q Consensus 193 ~~w~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~~-----~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~~ 267 (338)
..|.. ...|.+|+++++.+..++.+...+... ...++||+||||||||++++++|+.++.+++.+++..+...
T Consensus 17 ~~~~~--~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~ 94 (338)
T 3pfi_A 17 ETYET--SLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKS 94 (338)
T ss_dssp --------CCCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCSH
T ss_pred hhhhh--ccCCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccch
Confidence 35653 567889999999999999888888763 23579999999999999999999999999999999988877
Q ss_pred hHHHHHHHhcCCCcEEEEcCCCccCC
Q 035959 268 KHLRKVLIATENKSILVVGDIDCCTE 293 (338)
Q Consensus 268 ~~l~~~l~~~~~~~Il~iDeiD~~~~ 293 (338)
..+...+.....+++|||||||.+..
T Consensus 95 ~~~~~~~~~~~~~~vl~lDEi~~l~~ 120 (338)
T 3pfi_A 95 GDLAAILTNLSEGDILFIDEIHRLSP 120 (338)
T ss_dssp HHHHHHHHTCCTTCEEEEETGGGCCH
T ss_pred hHHHHHHHhccCCCEEEEechhhcCH
Confidence 88888888888999999999999853
No 26
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.36 E-value=2.3e-12 Score=128.78 Aligned_cols=121 Identities=24% Similarity=0.324 Sum_probs=91.6
Q ss_pred CCCccccccCChhHHHHHHHHHHh------------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC---
Q 035959 202 HPSTFDTLAMDTDMKKMIMDDLER------------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG--- 266 (338)
Q Consensus 202 ~p~~f~~l~~~~~~k~~i~~~l~~------------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~--- 266 (338)
.+.+|+++++.++.++++.+.+.. ..++|+||+||||||||+|++++|+.++.+++.+++.++..
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~ 105 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV 105 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCT
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhh
Confidence 456899999999888877765543 13578999999999999999999999999999999987653
Q ss_pred ---chHHHHHHHhcC--CCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcC
Q 035959 267 ---NKHLRKVLIATE--NKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWS 330 (338)
Q Consensus 267 ---~~~l~~~l~~~~--~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s 330 (338)
...++.+|.... .++|+||||||.+.. .|..... ........+++.||+.|||...
T Consensus 106 g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~--~r~~~~~------~~~~e~~~~l~~LL~~Ldg~~~ 166 (499)
T 2dhr_A 106 GVGAARVRDLFETAKRHAPCIVFIDEIDAVGR--KRGSGVG------GGNDEREQTLNQLLVEMDGFEK 166 (499)
T ss_dssp THHHHHHHHHTTTSSSSSSCEEEEECGGGTCC--CSSSSTT------TSSHHHHHHHHHHHHHGGGCCS
T ss_pred hhHHHHHHHHHHHHHhcCCCEEEEehHHHHHH--hhccCcC------CCcHHHHHHHHHHHHHhccccc
Confidence 234566676654 579999999999976 4432110 1122345789999999998754
No 27
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.34 E-value=5.5e-12 Score=118.03 Aligned_cols=94 Identities=28% Similarity=0.364 Sum_probs=80.7
Q ss_pred CCCCCccccccCChhHHHHHHHHHHhh-----hcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCCchHHHHHH
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLERA-----WKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKVL 274 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~~-----~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~~~~l~~~l 274 (338)
...|.+|+++++.+..++.+...+... ...++||+||||||||++++++++.++.+++.+++..+....++...+
T Consensus 5 ~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~l~~~l 84 (324)
T 1hqc_A 5 ALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAIL 84 (324)
T ss_dssp CCCCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSHHHHHHHH
T ss_pred ccCcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCChHHHHHHH
Confidence 356779999999998888888777652 336899999999999999999999999999999999888777888877
Q ss_pred Hh-cCCCcEEEEcCCCccCC
Q 035959 275 IA-TENKSILVVGDIDCCTE 293 (338)
Q Consensus 275 ~~-~~~~~Il~iDeiD~~~~ 293 (338)
.. ...+.+|||||||.+..
T Consensus 85 ~~~~~~~~~l~lDEi~~l~~ 104 (324)
T 1hqc_A 85 ANSLEEGDILFIDEIHRLSR 104 (324)
T ss_dssp TTTCCTTCEEEETTTTSCCH
T ss_pred HHhccCCCEEEEECCccccc
Confidence 77 67889999999999864
No 28
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.30 E-value=2.7e-12 Score=126.97 Aligned_cols=95 Identities=22% Similarity=0.208 Sum_probs=75.1
Q ss_pred CCccccccCChhHHHHHHHHHHh-----hhcCceeeeCCCCCCcHHHHHHHHHHhC--CcEEEEecCCcCC-----chHH
Q 035959 203 PSTFDTLAMDTDMKKMIMDDLER-----AWKRGYLLFGPPGTGKSSLIAAMANYLH--FDVYDLELSSVEG-----NKHL 270 (338)
Q Consensus 203 p~~f~~l~~~~~~k~~i~~~l~~-----~~~~g~LL~GppGtGKT~l~~aia~~l~--~~~~~l~~~~~~~-----~~~l 270 (338)
...|+++++.++.++.+...+.. ..++++||+||||||||++++++|++++ .+++.++++++.+ ...+
T Consensus 33 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (456)
T 2c9o_A 33 KQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVL 112 (456)
T ss_dssp CSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHHH
T ss_pred hhchhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHHH
Confidence 34689999999988866554443 3457899999999999999999999999 8999999988763 2347
Q ss_pred HHHHHhc-----CCCcEEEEcCCCccCCcccccc
Q 035959 271 RKVLIAT-----ENKSILVVGDIDCCTELQDRSA 299 (338)
Q Consensus 271 ~~~l~~~-----~~~~Il~iDeiD~~~~~~~r~~ 299 (338)
.++|..+ ..++||||||||.+.. +|..
T Consensus 113 ~~~f~~a~~~~~~~~~il~iDEid~l~~--~r~~ 144 (456)
T 2c9o_A 113 MENFRRAIGLRIKETKEVYEGEVTELTP--CETE 144 (456)
T ss_dssp HHHHHHTEEEEEEEEEEEEEEEEEEEEE--C---
T ss_pred HHHHHHHHhhhhcCCcEEEEechhhccc--ccCC
Confidence 7778776 3789999999999987 5543
No 29
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.29 E-value=3.7e-12 Score=115.65 Aligned_cols=122 Identities=24% Similarity=0.320 Sum_probs=85.9
Q ss_pred CCCCccccccCChhHHHHHHHHHHh------------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC--
Q 035959 201 DHPSTFDTLAMDTDMKKMIMDDLER------------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG-- 266 (338)
Q Consensus 201 ~~p~~f~~l~~~~~~k~~i~~~l~~------------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~-- 266 (338)
.++.+|+++++.++.+.++.+.... ..++|++|+||||||||+|++++|+.++..++.++..++..
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~ 89 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 89 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHH
Confidence 3455899999988888776654433 23568999999999999999999999999888888765431
Q ss_pred ----chHHHHHHHhcC--CCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcC
Q 035959 267 ----NKHLRKVLIATE--NKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWS 330 (338)
Q Consensus 267 ----~~~l~~~l~~~~--~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s 330 (338)
...+..++.... .++++++||||.+.. .|..... .........+..+|+.|||...
T Consensus 90 ~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~--~~~~~~~------~~~~~~~~~~~~ll~~l~g~~~ 151 (254)
T 1ixz_A 90 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGR--KRGSGVG------GGNDEREQTLNQLLVEMDGFEK 151 (254)
T ss_dssp TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC-----------------CHHHHHHHHHHHHHHHTCCT
T ss_pred hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhc--ccCcccc------ccchHHHHHHHHHHHHHhCCCC
Confidence 234566777654 579999999999875 3322110 0122345678899999998753
No 30
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.29 E-value=8.9e-12 Score=125.14 Aligned_cols=100 Identities=17% Similarity=0.284 Sum_probs=80.6
Q ss_pred CCccccccCCCCCccccccCChhHHHHHHHHHHhh-----------------hcCceeeeCCCCCCcHHHHHHHHHHhCC
Q 035959 192 HDTRQSAILDHPSTFDTLAMDTDMKKMIMDDLERA-----------------WKRGYLLFGPPGTGKSSLIAAMANYLHF 254 (338)
Q Consensus 192 ~~~w~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~~-----------------~~~g~LL~GppGtGKT~l~~aia~~l~~ 254 (338)
...|.. ...|.+|+++++.+..++.+.+.+... ..+++||+||||||||++++++|+.++.
T Consensus 26 ~~lW~e--kyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~ 103 (516)
T 1sxj_A 26 DKLWTV--KYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY 103 (516)
T ss_dssp CCCHHH--HTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCccc--ccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 446864 678999999999999999999888761 2468999999999999999999999999
Q ss_pred cEEEEecCCcCCchHHHHHHH-------------h-------cCCCcEEEEcCCCccCC
Q 035959 255 DVYDLELSSVEGNKHLRKVLI-------------A-------TENKSILVVGDIDCCTE 293 (338)
Q Consensus 255 ~~~~l~~~~~~~~~~l~~~l~-------------~-------~~~~~Il~iDeiD~~~~ 293 (338)
+++.+++++......+...+. . ...+.||||||+|.+..
T Consensus 104 ~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~ 162 (516)
T 1sxj_A 104 DILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSG 162 (516)
T ss_dssp EEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCT
T ss_pred CEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccch
Confidence 999999998776443333222 1 13578999999999975
No 31
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.28 E-value=3.1e-12 Score=122.56 Aligned_cols=112 Identities=20% Similarity=0.293 Sum_probs=81.8
Q ss_pred ccCChhHHHHHHHHHHh---------------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC-------
Q 035959 209 LAMDTDMKKMIMDDLER---------------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG------- 266 (338)
Q Consensus 209 l~~~~~~k~~i~~~l~~---------------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~------- 266 (338)
+++.+..++.+...+.. ..+.++||+||||||||++|+++|+.++.+++.++++.+..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~ 96 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 96 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence 57888888888877742 13468999999999999999999999999999999987663
Q ss_pred -chHHHHHHHhc------CCCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCC
Q 035959 267 -NKHLRKVLIAT------ENKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGL 328 (338)
Q Consensus 267 -~~~l~~~l~~~------~~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl 328 (338)
...+..++... ..++||||||||.+.. .|.+...+ .........+.||..|||.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~--~~~~~~~~------~~~~~~~~~~~Ll~~leg~ 157 (363)
T 3hws_A 97 VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISR--KSDNPSIT------RDVSGEGVQQALLKLIEGT 157 (363)
T ss_dssp HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCC--CSSCC---------CHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcc--cccccccc------cccchHHHHHHHHHHhcCc
Confidence 22345555544 2578999999999987 44332210 0111234789999999975
No 32
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.26 E-value=7.3e-13 Score=139.74 Aligned_cols=121 Identities=18% Similarity=0.341 Sum_probs=90.9
Q ss_pred CCccccccCChhHHHHHHHHHHh-------------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC---
Q 035959 203 PSTFDTLAMDTDMKKMIMDDLER-------------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG--- 266 (338)
Q Consensus 203 p~~f~~l~~~~~~k~~i~~~l~~-------------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~--- 266 (338)
..+|+++++.++.|+.+.+.+.. ..++++||+||||||||++++++|+.++.+++.++++++.+
T Consensus 473 ~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~ 552 (806)
T 1ypw_A 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF 552 (806)
T ss_dssp CCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCT
T ss_pred cccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhc
Confidence 34788888888888888877653 24567999999999999999999999999999999888653
Q ss_pred ---chHHHHHHHhcC--CCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcCC
Q 035959 267 ---NKHLRKVLIATE--NKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSS 331 (338)
Q Consensus 267 ---~~~l~~~l~~~~--~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s~ 331 (338)
...++.+|..+. .++||||||||.+.. .|.+... ........+++.||+.|||+...
T Consensus 553 g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~--~r~~~~~------~~~~~~~~v~~~LL~~ld~~~~~ 614 (806)
T 1ypw_A 553 GESEANVREIFDKARQAAPCVLFFDELDSIAK--ARGGNIG------DGGGAADRVINQILTEMDGMSTK 614 (806)
T ss_dssp TTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCC--TTTTCCS------HHHHHHHHHHHHHHTTCC-----
T ss_pred CccHHHHHHHHHHHHhcCCeEEEEEChhhhhh--hccCCCC------CcchhHHHHHHHHHHHHhccccc
Confidence 456777777664 689999999999987 5533211 00124578899999999998643
No 33
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.25 E-value=1.4e-11 Score=102.82 Aligned_cols=84 Identities=14% Similarity=0.190 Sum_probs=65.1
Q ss_pred cccCChhHHHHHHHHHHh--hhcCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCCchHHHHHHHhcCCCcE
Q 035959 208 TLAMDTDMKKMIMDDLER--AWKRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEGNKHLRKVLIATENKSI 282 (338)
Q Consensus 208 ~l~~~~~~k~~i~~~l~~--~~~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~~~~l~~~l~~~~~~~I 282 (338)
.+++..+..+++.+.+.. .....+||+||||||||++|+++++.. +.+++ +++..+.....+...+... ...+
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~a-~~g~ 79 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNAPQLNDFIALA-QGGT 79 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTSSCHHHHHHHH-TTSC
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcchhhhcHHHHc-CCcE
Confidence 356666667777777765 345679999999999999999999987 67888 9999887665555666554 5589
Q ss_pred EEEcCCCccCC
Q 035959 283 LVVGDIDCCTE 293 (338)
Q Consensus 283 l~iDeiD~~~~ 293 (338)
|+|||||.+..
T Consensus 80 l~ldei~~l~~ 90 (145)
T 3n70_A 80 LVLSHPEHLTR 90 (145)
T ss_dssp EEEECGGGSCH
T ss_pred EEEcChHHCCH
Confidence 99999999854
No 34
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.25 E-value=1.3e-11 Score=114.31 Aligned_cols=111 Identities=17% Similarity=0.285 Sum_probs=79.6
Q ss_pred cccCChhHHHHHHHHHHhh--------------hcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC-------
Q 035959 208 TLAMDTDMKKMIMDDLERA--------------WKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG------- 266 (338)
Q Consensus 208 ~l~~~~~~k~~i~~~l~~~--------------~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~------- 266 (338)
.+++.++.++.+...+..+ .+.++||+||||||||++++++|+.++.+++.++++.+..
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~ 95 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCcc
Confidence 4678888888888777651 3567999999999999999999999999999999987653
Q ss_pred -chHHHHHHHhc-------CCCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCC
Q 035959 267 -NKHLRKVLIAT-------ENKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGL 328 (338)
Q Consensus 267 -~~~l~~~l~~~-------~~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl 328 (338)
...+..++... ..++||||||+|.+.. ++..... +.........||+.||+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~--~~~~~~~--------~~~~~~~~~~Ll~~le~~ 155 (310)
T 1ofh_A 96 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICK--KGEYSGA--------DVSREGVQRDLLPLVEGS 155 (310)
T ss_dssp TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSC--CSSCCSS--------HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCc--ccccccc--------chhHHHHHHHHHHHhcCC
Confidence 23355555533 2478999999999976 3211100 111123467788888874
No 35
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.24 E-value=4.4e-11 Score=104.25 Aligned_cols=94 Identities=23% Similarity=0.320 Sum_probs=74.2
Q ss_pred CCCCCccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHh-----CCcEEEEecCCcCCchHHHHHH
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYL-----HFDVYDLELSSVEGNKHLRKVL 274 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l-----~~~~~~l~~~~~~~~~~l~~~l 274 (338)
...|..|+++++.+..++.+.+.+......+++|+||||||||++++++++.+ ...++.+++........+...+
T Consensus 10 ~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (226)
T 2chg_A 10 KYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKI 89 (226)
T ss_dssp HTSCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHH
T ss_pred hcCCCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHH
Confidence 46788999999999999999888887555569999999999999999999986 3567888887766544444433
Q ss_pred Hhc--------CCCcEEEEcCCCccCC
Q 035959 275 IAT--------ENKSILVVGDIDCCTE 293 (338)
Q Consensus 275 ~~~--------~~~~Il~iDeiD~~~~ 293 (338)
... ..+.+|+|||+|.+..
T Consensus 90 ~~~~~~~~~~~~~~~vliiDe~~~l~~ 116 (226)
T 2chg_A 90 KEFARTAPIGGAPFKIIFLDEADALTA 116 (226)
T ss_dssp HHHHTSCCSTTCSCEEEEEETGGGSCH
T ss_pred HHHhcccCCCccCceEEEEeChhhcCH
Confidence 321 4688999999999854
No 36
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.24 E-value=1.6e-11 Score=115.38 Aligned_cols=98 Identities=18% Similarity=0.207 Sum_probs=78.5
Q ss_pred CCccccccCCCCCccccccCChhHHHHHHHHHHhh-hcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCCchHH
Q 035959 192 HDTRQSAILDHPSTFDTLAMDTDMKKMIMDDLERA-WKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHL 270 (338)
Q Consensus 192 ~~~w~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~~-~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~~~~l 270 (338)
...|.. ...|.+|+++++.++.++.+.+.+... .+..+|++||||||||++++++|+.++.+++.++++... ...+
T Consensus 13 ~~~~~~--k~rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~-~~~i 89 (324)
T 3u61_B 13 EHILEQ--KYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK-IDFV 89 (324)
T ss_dssp CSSHHH--HSCCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC-HHHH
T ss_pred cchHHH--hhCCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC-HHHH
Confidence 346753 677899999999999999888888863 335678889999999999999999999999999988755 4445
Q ss_pred HHHHHhc----C---CCcEEEEcCCCccC
Q 035959 271 RKVLIAT----E---NKSILVVGDIDCCT 292 (338)
Q Consensus 271 ~~~l~~~----~---~~~Il~iDeiD~~~ 292 (338)
+..+... + .+.||+|||+|.+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~vliiDEi~~l~ 118 (324)
T 3u61_B 90 RGPLTNFASAASFDGRQKVIVIDEFDRSG 118 (324)
T ss_dssp HTHHHHHHHBCCCSSCEEEEEEESCCCGG
T ss_pred HHHHHHHHhhcccCCCCeEEEEECCcccC
Confidence 5444332 2 67899999999996
No 37
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.23 E-value=1.7e-11 Score=104.50 Aligned_cols=93 Identities=20% Similarity=0.370 Sum_probs=72.3
Q ss_pred CCCCccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHh----------CCcEEEEecCCcCC----
Q 035959 201 DHPSTFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYL----------HFDVYDLELSSVEG---- 266 (338)
Q Consensus 201 ~~p~~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l----------~~~~~~l~~~~~~~---- 266 (338)
..|..|+++++.+...+.+.+.+....+++++|+||||||||++++++++.+ +.+++.+++..+..
T Consensus 16 ~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (187)
T 2p65_A 16 ARAGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKY 95 (187)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCS
T ss_pred HhccccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCc
Confidence 3467899999999888888888877666789999999999999999999987 67788887765431
Q ss_pred ----chHHHHHHHhc---CCCcEEEEcCCCccCC
Q 035959 267 ----NKHLRKVLIAT---ENKSILVVGDIDCCTE 293 (338)
Q Consensus 267 ----~~~l~~~l~~~---~~~~Il~iDeiD~~~~ 293 (338)
...+.+++..+ ..+.+|+|||+|.+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~ 129 (187)
T 2p65_A 96 RGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVG 129 (187)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSS
T ss_pred hhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcc
Confidence 11234444333 3678999999999975
No 38
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.22 E-value=1.5e-11 Score=104.74 Aligned_cols=92 Identities=21% Similarity=0.382 Sum_probs=72.7
Q ss_pred CCCccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHh----------CCcEEEEecCCcCC-----
Q 035959 202 HPSTFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYL----------HFDVYDLELSSVEG----- 266 (338)
Q Consensus 202 ~p~~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l----------~~~~~~l~~~~~~~----- 266 (338)
.|..|+++++.++..+.+.+.+....+++++|+||||||||++++++++.+ +.+++.+++..+..
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (195)
T 1jbk_A 17 EQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYR 96 (195)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSH
T ss_pred hhccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCcc
Confidence 466889999999888889888877666789999999999999999999987 67888888765431
Q ss_pred ---chHHHHHHHh---cCCCcEEEEcCCCccCC
Q 035959 267 ---NKHLRKVLIA---TENKSILVVGDIDCCTE 293 (338)
Q Consensus 267 ---~~~l~~~l~~---~~~~~Il~iDeiD~~~~ 293 (338)
...+..++.. ...+.||+|||+|.+..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~ 129 (195)
T 1jbk_A 97 GEFEERLKGVLNDLAKQEGNVILFIDELHTMVG 129 (195)
T ss_dssp HHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT
T ss_pred ccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhc
Confidence 1234444443 34678999999999976
No 39
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.22 E-value=1.4e-11 Score=129.97 Aligned_cols=118 Identities=25% Similarity=0.370 Sum_probs=93.2
Q ss_pred CCCccccccCChhHHHHHHHHHHh-------------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC--
Q 035959 202 HPSTFDTLAMDTDMKKMIMDDLER-------------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG-- 266 (338)
Q Consensus 202 ~p~~f~~l~~~~~~k~~i~~~l~~-------------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~-- 266 (338)
.+.+|+++++.++.++.+.+.+.. ..++++||+||||||||++++++|+.++.+++.+++.++..
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~ 278 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhh
Confidence 345899999999899888888765 33568999999999999999999999999999999877653
Q ss_pred ----chHHHHHHHhcC--CCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcC
Q 035959 267 ----NKHLRKVLIATE--NKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWS 330 (338)
Q Consensus 267 ----~~~l~~~l~~~~--~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s 330 (338)
...+..+|.... .++++||||||.+.. +|.... ....+..++.|++.+||+..
T Consensus 279 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~--~~~~~~---------~~~~~~~~~~Ll~ll~g~~~ 337 (806)
T 1ypw_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAP--KREKTH---------GEVERRIVSQLLTLMDGLKQ 337 (806)
T ss_dssp TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSC--TTSCCC---------SHHHHHHHHHHHHHHHSSCT
T ss_pred hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhh--cccccc---------chHHHHHHHHHHHHhhhhcc
Confidence 234666666653 689999999999987 443221 12446788999999999864
No 40
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.20 E-value=3.6e-11 Score=111.83 Aligned_cols=106 Identities=19% Similarity=0.204 Sum_probs=77.7
Q ss_pred cccCChhHHHHHHHHHHhh---------------hcCceeeeCCCCCCcHHHHHHHHHHhC-------CcEEEEecCCcC
Q 035959 208 TLAMDTDMKKMIMDDLERA---------------WKRGYLLFGPPGTGKSSLIAAMANYLH-------FDVYDLELSSVE 265 (338)
Q Consensus 208 ~l~~~~~~k~~i~~~l~~~---------------~~~g~LL~GppGtGKT~l~~aia~~l~-------~~~~~l~~~~~~ 265 (338)
++++.+..++.+.+.+... ...++||+||||||||++++++|+.++ .+++.+++..+.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 5788888888888766541 223599999999999999999999883 378899888765
Q ss_pred C------chHHHHHHHhcCCCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcC
Q 035959 266 G------NKHLRKVLIATENKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDG 327 (338)
Q Consensus 266 ~------~~~l~~~l~~~~~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDg 327 (338)
. ...+..++... .++||||||+|.+.. .+.+. ......+..|++.||.
T Consensus 112 ~~~~g~~~~~~~~~~~~~-~~~vl~iDEid~l~~--~~~~~-----------~~~~~~~~~Ll~~l~~ 165 (309)
T 3syl_A 112 GQYIGHTAPKTKEVLKRA-MGGVLFIDEAYYLYR--PDNER-----------DYGQEAIEILLQVMEN 165 (309)
T ss_dssp CSSTTCHHHHHHHHHHHH-TTSEEEEETGGGSCC--CC--------------CCTHHHHHHHHHHHHH
T ss_pred hhcccccHHHHHHHHHhc-CCCEEEEEChhhhcc--CCCcc-----------cccHHHHHHHHHHHhc
Confidence 3 23455566554 578999999999975 33211 2235677888888885
No 41
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.20 E-value=2.5e-11 Score=111.95 Aligned_cols=121 Identities=24% Similarity=0.320 Sum_probs=85.6
Q ss_pred CCCCccccccCChhHHHHHHHHHHh------------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC--
Q 035959 201 DHPSTFDTLAMDTDMKKMIMDDLER------------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG-- 266 (338)
Q Consensus 201 ~~p~~f~~l~~~~~~k~~i~~~l~~------------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~-- 266 (338)
.++.+|+++++.++.++++.+.... ..++|++|+||||||||+|++++|..++..++.+++.++..
T Consensus 34 ~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~ 113 (278)
T 1iy2_A 34 APKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 113 (278)
T ss_dssp CCCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHST
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHH
Confidence 3566899999999888777654443 23568999999999999999999999999998888765431
Q ss_pred ----chHHHHHHHhc--CCCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCc
Q 035959 267 ----NKHLRKVLIAT--ENKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLW 329 (338)
Q Consensus 267 ----~~~l~~~l~~~--~~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~ 329 (338)
...+..++... ..++++++||||.+.. .|..... .........+..+++.|||..
T Consensus 114 ~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~--~~~~~~~------~~~~~~~~~~~~ll~~lsgg~ 174 (278)
T 1iy2_A 114 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGR--KRGSGVG------GGNDEREQTLNQLLVEMDGFE 174 (278)
T ss_dssp TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHC--C--------------CHHHHHHHHHHHHHHTTCC
T ss_pred hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhc--ccccccC------CcchHHHHHHHHHHHHHhCCC
Confidence 23455666665 3579999999999865 3322100 011234567889999999864
No 42
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.17 E-value=9.9e-11 Score=107.35 Aligned_cols=92 Identities=23% Similarity=0.253 Sum_probs=66.8
Q ss_pred hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC-------chHHHHHHHhc--CCCcEEEEcCCCccCCccc
Q 035959 226 AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG-------NKHLRKVLIAT--ENKSILVVGDIDCCTELQD 296 (338)
Q Consensus 226 ~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~-------~~~l~~~l~~~--~~~~Il~iDeiD~~~~~~~ 296 (338)
..++++||+||||||||++++++|+.++.+++.+++.+... ...++.++... ..+++|+|||||.+.. .
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~--~ 139 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLD--Y 139 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTT--C
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhc--c
Confidence 34568999999999999999999999999999998765221 13455666654 4689999999999976 3
Q ss_pred ccccccCCCCCCCCCCcchhhHHHHHHHhcCCc
Q 035959 297 RSAQARTASPDWHSPKRDQITLSGLLNFTDGLW 329 (338)
Q Consensus 297 r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~ 329 (338)
+... .......+..|+..+++..
T Consensus 140 ~~~~----------~~~~~~~l~~L~~~~~~~~ 162 (272)
T 1d2n_A 140 VPIG----------PRFSNLVLQALLVLLKKAP 162 (272)
T ss_dssp BTTT----------TBCCHHHHHHHHHHTTCCC
T ss_pred CCCC----------hhHHHHHHHHHHHHhcCcc
Confidence 3211 1223456667777777764
No 43
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.16 E-value=1.8e-10 Score=110.69 Aligned_cols=113 Identities=21% Similarity=0.295 Sum_probs=75.2
Q ss_pred cccCChhHHHHHHHHHHh------------------------------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEE
Q 035959 208 TLAMDTDMKKMIMDDLER------------------------------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVY 257 (338)
Q Consensus 208 ~l~~~~~~k~~i~~~l~~------------------------------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~ 257 (338)
.+++.+..++.+...+.. ..+.++||+||||||||++++++|+.++.+++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 367788888877766621 02457999999999999999999999999999
Q ss_pred EEecCCcCC--------chHHHHHHHhcC------CCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHH
Q 035959 258 DLELSSVEG--------NKHLRKVLIATE------NKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLN 323 (338)
Q Consensus 258 ~l~~~~~~~--------~~~l~~~l~~~~------~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn 323 (338)
.+++..+.. ...+..++.... .++||||||||.+.. +|.+.... .+.......+.||.
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~--~~~~~~~~------~~~~~~~~~~~Ll~ 173 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISR--LSENRSIT------RDVSGEGVQQALLK 173 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC----------------------CHHHHHHHHH
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhh--hcCCCcee------cccchHHHHHHHHH
Confidence 999987642 223445544332 679999999999976 43322110 01112346888999
Q ss_pred HhcCC
Q 035959 324 FTDGL 328 (338)
Q Consensus 324 ~iDgl 328 (338)
.||+-
T Consensus 174 ~le~~ 178 (376)
T 1um8_A 174 IVEGS 178 (376)
T ss_dssp HHHCC
T ss_pred Hhhcc
Confidence 99964
No 44
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.14 E-value=9e-11 Score=115.88 Aligned_cols=93 Identities=24% Similarity=0.429 Sum_probs=74.0
Q ss_pred CCCCCccccccCChhHH---HHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCCchHHHHHHHh
Q 035959 200 LDHPSTFDTLAMDTDMK---KMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKVLIA 276 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k---~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~~~~l~~~l~~ 276 (338)
...|.+|+++++.++.. ..+...+......++|||||||||||++++++|+.++.+++.+++... ...+++.++..
T Consensus 19 r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~-~~~~ir~~~~~ 97 (447)
T 3pvs_A 19 RMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTS-GVKEIREAIER 97 (447)
T ss_dssp HTCCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC-CHHHHHHHHHH
T ss_pred HhCCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC-CHHHHHHHHHH
Confidence 45688999999999887 667777766555689999999999999999999999999999987653 34455555554
Q ss_pred c------CCCcEEEEcCCCccCC
Q 035959 277 T------ENKSILVVGDIDCCTE 293 (338)
Q Consensus 277 ~------~~~~Il~iDeiD~~~~ 293 (338)
. ..+.||||||||.+..
T Consensus 98 a~~~~~~~~~~iLfIDEI~~l~~ 120 (447)
T 3pvs_A 98 ARQNRNAGRRTILFVDEVHRFNK 120 (447)
T ss_dssp HHHHHHTTCCEEEEEETTTCC--
T ss_pred HHHhhhcCCCcEEEEeChhhhCH
Confidence 3 3689999999999864
No 45
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.12 E-value=1.6e-10 Score=105.44 Aligned_cols=89 Identities=13% Similarity=0.213 Sum_probs=62.0
Q ss_pred CccccccCChhHHHHHHHHHHh--hhcCceeeeCCCCCCcHHHHHHHHHHhC---CcEEEEecCCcCCchHHHHHHH---
Q 035959 204 STFDTLAMDTDMKKMIMDDLER--AWKRGYLLFGPPGTGKSSLIAAMANYLH---FDVYDLELSSVEGNKHLRKVLI--- 275 (338)
Q Consensus 204 ~~f~~l~~~~~~k~~i~~~l~~--~~~~g~LL~GppGtGKT~l~~aia~~l~---~~~~~l~~~~~~~~~~l~~~l~--- 275 (338)
.+|+++++..+..+.+.+.+.. ....++||+||||||||++++++++.+. .+++.++++.+.. ..+...+.
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~g~~ 81 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE-NLLDSELFGHE 81 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCH-HHHHHHHHCCC
T ss_pred cccccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCCh-hHHHHHhcCCc
Confidence 3688888888888888877766 3457899999999999999999999885 6899999988642 22222111
Q ss_pred ---------------hcCCCcEEEEcCCCccCC
Q 035959 276 ---------------ATENKSILVVGDIDCCTE 293 (338)
Q Consensus 276 ---------------~~~~~~Il~iDeiD~~~~ 293 (338)
......+|||||||.+..
T Consensus 82 ~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~ 114 (265)
T 2bjv_A 82 AGAFTGAQKRHPGRFERADGGTLFLDELATAPM 114 (265)
T ss_dssp ---------CCCCHHHHTTTSEEEEESGGGSCH
T ss_pred ccccccccccccchhhhcCCcEEEEechHhcCH
Confidence 113468999999999854
No 46
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.12 E-value=3.3e-10 Score=99.69 Aligned_cols=93 Identities=18% Similarity=0.322 Sum_probs=70.0
Q ss_pred CCCCCccccccCChhHHHHHHHHHHhhh-cCceeeeCCCCCCcHHHHHHHHHHhCC------------------------
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLERAW-KRGYLLFGPPGTGKSSLIAAMANYLHF------------------------ 254 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~~~-~~g~LL~GppGtGKT~l~~aia~~l~~------------------------ 254 (338)
...|..|+++++.+...+.+...+.... ++.++|+||||||||++++++++.++.
T Consensus 16 ~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (250)
T 1njg_A 16 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFV 95 (250)
T ss_dssp HTCCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCS
T ss_pred ccCCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCc
Confidence 4678889999999998888888887632 346899999999999999999998743
Q ss_pred cEEEEecCCcCCchHHHHHHHhcC------CCcEEEEcCCCccC
Q 035959 255 DVYDLELSSVEGNKHLRKVLIATE------NKSILVVGDIDCCT 292 (338)
Q Consensus 255 ~~~~l~~~~~~~~~~l~~~l~~~~------~~~Il~iDeiD~~~ 292 (338)
+++.++.........+..++.... .+.+|+|||+|.+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~ 139 (250)
T 1njg_A 96 DLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS 139 (250)
T ss_dssp SEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC
T ss_pred ceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECccccc
Confidence 334444443233345666666543 46899999999974
No 47
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.10 E-value=2.9e-11 Score=100.71 Aligned_cols=82 Identities=12% Similarity=0.053 Sum_probs=60.9
Q ss_pred ccCChhHHHHHHHHHHh--hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCCchHHHHHHHhcCCCcEEEEc
Q 035959 209 LAMDTDMKKMIMDDLER--AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKVLIATENKSILVVG 286 (338)
Q Consensus 209 l~~~~~~k~~i~~~l~~--~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~~~~l~~~l~~~~~~~Il~iD 286 (338)
+++..+..+++.+.+.. ....++||+||||||||++|+++++..+ +++.+++..+... .....+.. ....+|+||
T Consensus 6 ~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~-~~~~~~~~-a~~~~l~lD 82 (143)
T 3co5_A 6 KLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLID-MPMELLQK-AEGGVLYVG 82 (143)
T ss_dssp --CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHH-CHHHHHHH-TTTSEEEEE
T ss_pred ceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChH-hhhhHHHh-CCCCeEEEe
Confidence 45566666777777765 3456799999999999999999999888 8888888875421 13344443 457899999
Q ss_pred CCCccCC
Q 035959 287 DIDCCTE 293 (338)
Q Consensus 287 eiD~~~~ 293 (338)
|||.+..
T Consensus 83 ei~~l~~ 89 (143)
T 3co5_A 83 DIAQYSR 89 (143)
T ss_dssp ECTTCCH
T ss_pred ChHHCCH
Confidence 9999864
No 48
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.09 E-value=6.9e-11 Score=101.64 Aligned_cols=90 Identities=19% Similarity=0.231 Sum_probs=61.9
Q ss_pred CCCccccccCChhHHHHHHHHHHh-------hhcCceeeeCCCCCCcHHHHHHHHHHh----CCcEEEEecCCcCCc---
Q 035959 202 HPSTFDTLAMDTDMKKMIMDDLER-------AWKRGYLLFGPPGTGKSSLIAAMANYL----HFDVYDLELSSVEGN--- 267 (338)
Q Consensus 202 ~p~~f~~l~~~~~~k~~i~~~l~~-------~~~~g~LL~GppGtGKT~l~~aia~~l----~~~~~~l~~~~~~~~--- 267 (338)
.+.+|++++...+..+.+++.+.. +...+++|+||||||||+|++++++.+ |..+..+++.++...
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~ 84 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKH 84 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHH
T ss_pred hhCccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH
Confidence 466899988754444555555543 345789999999999999999999987 666777766544310
Q ss_pred ----hHHHHHHHhcCCCcEEEEcCCCcc
Q 035959 268 ----KHLRKVLIATENKSILVVGDIDCC 291 (338)
Q Consensus 268 ----~~l~~~l~~~~~~~Il~iDeiD~~ 291 (338)
.....++....++.+|+|||++..
T Consensus 85 ~~~~~~~~~~~~~~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 85 LMDEGKDTKFLKTVLNSPVLVLDDLGSE 112 (180)
T ss_dssp HHHHTCCSHHHHHHHTCSEEEEETCSSS
T ss_pred HhcCchHHHHHHHhcCCCEEEEeCCCCC
Confidence 001133444457899999999865
No 49
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.09 E-value=1.4e-10 Score=109.48 Aligned_cols=99 Identities=23% Similarity=0.360 Sum_probs=73.9
Q ss_pred CccccccCCCCCccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHhC------CcEEEEecCCcCC
Q 035959 193 DTRQSAILDHPSTFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYLH------FDVYDLELSSVEG 266 (338)
Q Consensus 193 ~~w~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l~------~~~~~l~~~~~~~ 266 (338)
..|.. ...|.+|+++++.++.++.+...+......++||+||||||||++++++|+.++ ..+..+++++...
T Consensus 25 ~~~~~--k~~p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 102 (353)
T 1sxj_D 25 QPWVE--KYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERG 102 (353)
T ss_dssp -CHHH--HTCCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCC
T ss_pred ccHHH--hcCCCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccc
Confidence 35654 568899999999999998888888764445599999999999999999999864 4688888877554
Q ss_pred chHHHHHH---Hh---------------cCCCcEEEEcCCCccCC
Q 035959 267 NKHLRKVL---IA---------------TENKSILVVGDIDCCTE 293 (338)
Q Consensus 267 ~~~l~~~l---~~---------------~~~~~Il~iDeiD~~~~ 293 (338)
...++..+ .. ...+.||+|||+|.+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~ 147 (353)
T 1sxj_D 103 ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA 147 (353)
T ss_dssp HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH
T ss_pred hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH
Confidence 33333222 11 12457999999999864
No 50
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.08 E-value=2.3e-10 Score=106.60 Aligned_cols=99 Identities=20% Similarity=0.314 Sum_probs=73.2
Q ss_pred CccccccCCCCCccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHhC-----CcEEEEecCCcCCc
Q 035959 193 DTRQSAILDHPSTFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYLH-----FDVYDLELSSVEGN 267 (338)
Q Consensus 193 ~~w~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l~-----~~~~~l~~~~~~~~ 267 (338)
..|.. ...|.+|+++++.++.++.+...+......++||+||||||||++++++|+.+. ..++.+++++....
T Consensus 13 ~~~~~--k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~ 90 (327)
T 1iqp_A 13 KPWVE--KYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGI 90 (327)
T ss_dssp SCHHH--HTCCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHH
T ss_pred Cchhh--ccCCCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCch
Confidence 35653 578889999999999999888888765444699999999999999999999863 34778887654322
Q ss_pred hHHHHHHH----hc----CCCcEEEEcCCCccCC
Q 035959 268 KHLRKVLI----AT----ENKSILVVGDIDCCTE 293 (338)
Q Consensus 268 ~~l~~~l~----~~----~~~~Il~iDeiD~~~~ 293 (338)
..++..+. .. ..+.+|+|||+|.+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~ 124 (327)
T 1iqp_A 91 NVIREKVKEFARTKPIGGASFKIIFLDEADALTQ 124 (327)
T ss_dssp HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH
T ss_pred HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH
Confidence 22222222 11 3578999999999854
No 51
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.06 E-value=1.3e-10 Score=107.93 Aligned_cols=98 Identities=22% Similarity=0.296 Sum_probs=73.2
Q ss_pred ccccccCCCCCccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHh-----CCcEEEEecCCcCCch
Q 035959 194 TRQSAILDHPSTFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYL-----HFDVYDLELSSVEGNK 268 (338)
Q Consensus 194 ~w~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l-----~~~~~~l~~~~~~~~~ 268 (338)
.|. ....|.+|+++++.+..++.+.+.+......++||+||||||||++++++|+.+ +.+++.+++++.....
T Consensus 6 ~~~--~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 83 (319)
T 2chq_A 6 IWV--EKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGID 83 (319)
T ss_dssp CTT--TTTSCSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTT
T ss_pred cHH--HhcCCCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChH
Confidence 454 367889999999999988888887776444459999999999999999999987 3457888887654332
Q ss_pred HHHHHHH----hc----CCCcEEEEcCCCccCC
Q 035959 269 HLRKVLI----AT----ENKSILVVGDIDCCTE 293 (338)
Q Consensus 269 ~l~~~l~----~~----~~~~Il~iDeiD~~~~ 293 (338)
.++..+. .. ..+.+|+|||+|.+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~ 116 (319)
T 2chq_A 84 VVRHKIKEFARTAPIGGAPFKIIFLDEADALTA 116 (319)
T ss_dssp TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH
T ss_pred HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH
Confidence 2222222 11 3579999999998853
No 52
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.06 E-value=3.5e-10 Score=107.66 Aligned_cols=62 Identities=21% Similarity=0.305 Sum_probs=46.7
Q ss_pred CCCc-cccccCChhHHHHH---HHHHHhh--hcCceeeeCCCCCCcHHHHHHHHHHhCC--cEEEEecCC
Q 035959 202 HPST-FDTLAMDTDMKKMI---MDDLERA--WKRGYLLFGPPGTGKSSLIAAMANYLHF--DVYDLELSS 263 (338)
Q Consensus 202 ~p~~-f~~l~~~~~~k~~i---~~~l~~~--~~~g~LL~GppGtGKT~l~~aia~~l~~--~~~~l~~~~ 263 (338)
.|.. |+++++.+..++.+ .+.+... .++++||+||||||||++++++|+.++. +++.+++..
T Consensus 38 ~p~~~~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~ 107 (368)
T 3uk6_A 38 EPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSE 107 (368)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGG
T ss_pred CcCcchhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchh
Confidence 4444 99999999887764 3333332 2368999999999999999999999974 666666544
No 53
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.05 E-value=9.4e-10 Score=104.25 Aligned_cols=95 Identities=23% Similarity=0.324 Sum_probs=75.1
Q ss_pred cCCCCCccccccCChhHHHHHHHHHHhh-----hcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCCchHHHHH
Q 035959 199 ILDHPSTFDTLAMDTDMKKMIMDDLERA-----WKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKV 273 (338)
Q Consensus 199 ~~~~p~~f~~l~~~~~~k~~i~~~l~~~-----~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~~~~l~~~ 273 (338)
..-.|.+|+.+++.+..++.+...+... ....++|+||||||||||++++|+.++.++...+........++..+
T Consensus 17 ~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~ 96 (334)
T 1in4_A 17 QFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAI 96 (334)
T ss_dssp CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHH
T ss_pred HHcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHH
Confidence 3466889999998887777766666542 12568999999999999999999999988877776665556667777
Q ss_pred HHhcCCCcEEEEcCCCccCC
Q 035959 274 LIATENKSILVVGDIDCCTE 293 (338)
Q Consensus 274 l~~~~~~~Il~iDeiD~~~~ 293 (338)
+.....+.|++|||+|.+..
T Consensus 97 ~~~~~~~~v~~iDE~~~l~~ 116 (334)
T 1in4_A 97 LTSLERGDVLFIDEIHRLNK 116 (334)
T ss_dssp HHHCCTTCEEEEETGGGCCH
T ss_pred HHHccCCCEEEEcchhhcCH
Confidence 76666789999999998853
No 54
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.04 E-value=1.8e-10 Score=102.23 Aligned_cols=93 Identities=16% Similarity=0.227 Sum_probs=65.4
Q ss_pred cCCCCCccccccCC---hhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHhC---CcEEEEecCCcCCchHHHH
Q 035959 199 ILDHPSTFDTLAMD---TDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYLH---FDVYDLELSSVEGNKHLRK 272 (338)
Q Consensus 199 ~~~~p~~f~~l~~~---~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l~---~~~~~l~~~~~~~~~~l~~ 272 (338)
++.++.+|+++++. ....+.+...+..+..++++|+||||||||++++++++.+. ..++.+++.++... +..
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~--~~~ 97 (242)
T 3bos_A 20 HLPDDETFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASI--STA 97 (242)
T ss_dssp CCCTTCSTTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGS--CGG
T ss_pred CCCCCCChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH--HHH
Confidence 34555789998863 23344444444334467899999999999999999999874 78888888775431 122
Q ss_pred HHHhcCCCcEEEEcCCCccCC
Q 035959 273 VLIATENKSILVVGDIDCCTE 293 (338)
Q Consensus 273 ~l~~~~~~~Il~iDeiD~~~~ 293 (338)
.+.....+.+|+|||+|.+..
T Consensus 98 ~~~~~~~~~vliiDe~~~~~~ 118 (242)
T 3bos_A 98 LLEGLEQFDLICIDDVDAVAG 118 (242)
T ss_dssp GGTTGGGSSEEEEETGGGGTT
T ss_pred HHHhccCCCEEEEeccccccC
Confidence 333445689999999999865
No 55
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.04 E-value=3.1e-10 Score=106.68 Aligned_cols=94 Identities=16% Similarity=0.236 Sum_probs=63.5
Q ss_pred CCCCCcccccc-CCh--hHHHHHHHHHHhhh--cCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCCc----
Q 035959 200 LDHPSTFDTLA-MDT--DMKKMIMDDLERAW--KRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEGN---- 267 (338)
Q Consensus 200 ~~~p~~f~~l~-~~~--~~k~~i~~~l~~~~--~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~~---- 267 (338)
+.+..+|++++ +.. .....+...+..+. .++++|+||||||||++++++++.+ +.+++.+++.++...
T Consensus 4 l~~~~~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~ 83 (324)
T 1l8q_A 4 LNPKYTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEH 83 (324)
T ss_dssp CCTTCCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHH
T ss_pred CCCCCCcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHH
Confidence 45566899987 322 22333444443332 3689999999999999999999999 899999988765311
Q ss_pred ---hHHHHHHHhcCCCcEEEEcCCCccCC
Q 035959 268 ---KHLRKVLIATENKSILVVGDIDCCTE 293 (338)
Q Consensus 268 ---~~l~~~l~~~~~~~Il~iDeiD~~~~ 293 (338)
..+.........+++|+|||||.+..
T Consensus 84 ~~~~~~~~~~~~~~~~~vL~iDEi~~l~~ 112 (324)
T 1l8q_A 84 LKKGTINEFRNMYKSVDLLLLDDVQFLSG 112 (324)
T ss_dssp HHHTCHHHHHHHHHTCSEEEEECGGGGTT
T ss_pred HHcCcHHHHHHHhcCCCEEEEcCcccccC
Confidence 00111222223589999999999865
No 56
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.02 E-value=1.2e-09 Score=103.89 Aligned_cols=94 Identities=18% Similarity=0.320 Sum_probs=71.3
Q ss_pred CCCCCccccccCChhHHHHHHHHHHhhh-cCceeeeCCCCCCcHHHHHHHHHHhCC------------------------
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLERAW-KRGYLLFGPPGTGKSSLIAAMANYLHF------------------------ 254 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~~~-~~g~LL~GppGtGKT~l~~aia~~l~~------------------------ 254 (338)
...|.+|+++++.+...+.+...+.... ++.+||+||||||||++++++|+.++.
T Consensus 9 k~rp~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
T 1jr3_A 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFV 88 (373)
T ss_dssp HTCCCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCS
T ss_pred hhCCCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCC
Confidence 5678899999999998888888887632 346899999999999999999998853
Q ss_pred cEEEEecCCcCCchHHHHHHHhcC------CCcEEEEcCCCccCC
Q 035959 255 DVYDLELSSVEGNKHLRKVLIATE------NKSILVVGDIDCCTE 293 (338)
Q Consensus 255 ~~~~l~~~~~~~~~~l~~~l~~~~------~~~Il~iDeiD~~~~ 293 (338)
+++.++...-.....++.++.... .+.||+|||+|.+..
T Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~ 133 (373)
T 1jr3_A 89 DLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR 133 (373)
T ss_dssp SCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCH
T ss_pred ceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcH
Confidence 345555543233345666666553 468999999999853
No 57
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.00 E-value=1.3e-10 Score=114.18 Aligned_cols=108 Identities=16% Similarity=0.262 Sum_probs=61.9
Q ss_pred cccCChhHHHHHHHHHHhh--------------hcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCC-------
Q 035959 208 TLAMDTDMKKMIMDDLERA--------------WKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEG------- 266 (338)
Q Consensus 208 ~l~~~~~~k~~i~~~l~~~--------------~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~------- 266 (338)
.+++.++.|+.+...+..+ +++++||+||||||||++++++|..++.+++.++++.+..
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d 95 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeecc
Confidence 4678888888887766543 3578999999999999999999999999999999876542
Q ss_pred -chHHHHHHHhcCCCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcCC
Q 035959 267 -NKHLRKVLIATENKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSS 331 (338)
Q Consensus 267 -~~~l~~~l~~~~~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s~ 331 (338)
...++.++... ..++.+||+|.+... . .....+++++.||+.|||+.+.
T Consensus 96 ~e~~lr~lf~~a--~~~~~~De~d~~~~~--~------------~~~~e~rvl~~LL~~~dg~~~~ 145 (444)
T 1g41_A 96 VDSIIRDLTDSA--MKLVRQQEIAKNRAR--A------------EDVAEERILDALLPPAKNQWGE 145 (444)
T ss_dssp THHHHHHHHHHH--HHHHHHHHHHSCC---------------------------------------
T ss_pred HHHHHHHHHHHH--Hhcchhhhhhhhhcc--c------------hhhHHHHHHHHHHHHhhccccc
Confidence 23455555543 223457887766431 1 1234478999999999999754
No 58
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.00 E-value=7.7e-10 Score=102.79 Aligned_cols=98 Identities=16% Similarity=0.232 Sum_probs=75.5
Q ss_pred ccccccCCCCCccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHh-----CCcEEEEecCCcCCch
Q 035959 194 TRQSAILDHPSTFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYL-----HFDVYDLELSSVEGNK 268 (338)
Q Consensus 194 ~w~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l-----~~~~~~l~~~~~~~~~ 268 (338)
.|.. ...|.+|+++++.+..++.+...+.......++|+||||||||++++++|+.+ +.+++.+++.+.....
T Consensus 10 ~~~~--~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 87 (323)
T 1sxj_B 10 PWVE--KYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGID 87 (323)
T ss_dssp CHHH--HTCCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHH
T ss_pred cHHH--hcCCCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChH
Confidence 4643 57788999999999999988888876433449999999999999999999986 3567888887655555
Q ss_pred HHHHHHHhc--------C-CCcEEEEcCCCccCC
Q 035959 269 HLRKVLIAT--------E-NKSILVVGDIDCCTE 293 (338)
Q Consensus 269 ~l~~~l~~~--------~-~~~Il~iDeiD~~~~ 293 (338)
.++.++... . ++.+|+|||+|.+..
T Consensus 88 ~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~ 121 (323)
T 1sxj_B 88 VVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA 121 (323)
T ss_dssp HHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH
T ss_pred HHHHHHHHHHhccccCCCCCceEEEEECcccCCH
Confidence 555554421 2 478999999999853
No 59
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.98 E-value=1.6e-09 Score=100.59 Aligned_cols=86 Identities=16% Similarity=0.348 Sum_probs=62.8
Q ss_pred ccccCChhHHHHHHHHHHhhh---------cCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCCchHHHHH-
Q 035959 207 DTLAMDTDMKKMIMDDLERAW---------KRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEGNKHLRKV- 273 (338)
Q Consensus 207 ~~l~~~~~~k~~i~~~l~~~~---------~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~~~~l~~~- 273 (338)
+.+++....++.+...+.... ...+||+||||||||++++++|+.+ +.+++.++++.+........+
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 96 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLI 96 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhc
Confidence 346677777777777777631 2368999999999999999999998 556999999876543322222
Q ss_pred ------------------HHhcCCCcEEEEcCCCccCC
Q 035959 274 ------------------LIATENKSILVVGDIDCCTE 293 (338)
Q Consensus 274 ------------------l~~~~~~~Il~iDeiD~~~~ 293 (338)
+.. ...++|+|||+|.+..
T Consensus 97 g~~~~~~~~~~~~~~~~~~~~-~~~~vl~lDEi~~l~~ 133 (311)
T 4fcw_A 97 GAPPGYVGYEEGGQLTEAVRR-RPYSVILFDAIEKAHP 133 (311)
T ss_dssp CCCTTSTTTTTCCHHHHHHHH-CSSEEEEEETGGGSCH
T ss_pred CCCCccccccccchHHHHHHh-CCCeEEEEeChhhcCH
Confidence 221 2468999999998853
No 60
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.96 E-value=4.1e-10 Score=98.36 Aligned_cols=91 Identities=20% Similarity=0.278 Sum_probs=58.8
Q ss_pred CCCccccccCChhHHHHHHHHHHh----h--h--cCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCC----
Q 035959 202 HPSTFDTLAMDTDMKKMIMDDLER----A--W--KRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEG---- 266 (338)
Q Consensus 202 ~p~~f~~l~~~~~~k~~i~~~l~~----~--~--~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~---- 266 (338)
.+.+|++++......+.+++.+.. . + +++++|+||||||||+|++++++.+ +.++..+++.++..
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKH 99 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHH
Confidence 356899988755333333333332 2 1 1789999999999999999999988 67787777654321
Q ss_pred ---chHHHHHHHhcCCCcEEEEcCCCccC
Q 035959 267 ---NKHLRKVLIATENKSILVVGDIDCCT 292 (338)
Q Consensus 267 ---~~~l~~~l~~~~~~~Il~iDeiD~~~ 292 (338)
...+..++.......+|+|||++...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~lilDei~~~~ 128 (202)
T 2w58_A 100 SLQDQTMNEKLDYIKKVPVLMLDDLGAEA 128 (202)
T ss_dssp C---CCCHHHHHHHHHSSEEEEEEECCC-
T ss_pred HhccchHHHHHHHhcCCCEEEEcCCCCCc
Confidence 11122233333445799999997753
No 61
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.93 E-value=5.7e-10 Score=105.04 Aligned_cols=89 Identities=12% Similarity=0.165 Sum_probs=63.6
Q ss_pred CCccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCCchHHHHHHH-h-----
Q 035959 203 PSTFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKVLI-A----- 276 (338)
Q Consensus 203 p~~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~~~~l~~~l~-~----- 276 (338)
|..++.+++.++.++.+...+.. .+++||+||||||||++++++|+.++.+++.+++.......++..... .
T Consensus 23 ~~~~~~i~g~~~~~~~l~~~l~~--~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~~~~ 100 (331)
T 2r44_A 23 DEVGKVVVGQKYMINRLLIGICT--GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQHKGN 100 (331)
T ss_dssp HHHTTTCCSCHHHHHHHHHHHHH--TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEETTTTE
T ss_pred HHhccceeCcHHHHHHHHHHHHc--CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCceeecCCCCc
Confidence 33556778888888877777664 578999999999999999999999999999998854332222110000 0
Q ss_pred --c-C---CCcEEEEcCCCccCC
Q 035959 277 --T-E---NKSILVVGDIDCCTE 293 (338)
Q Consensus 277 --~-~---~~~Il~iDeiD~~~~ 293 (338)
. . ..+||||||+|.+.+
T Consensus 101 ~~~~~g~l~~~vl~iDEi~~~~~ 123 (331)
T 2r44_A 101 FEVKKGPVFSNFILADEVNRSPA 123 (331)
T ss_dssp EEEEECTTCSSEEEEETGGGSCH
T ss_pred eEeccCcccccEEEEEccccCCH
Confidence 0 1 137999999998753
No 62
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=98.93 E-value=2.5e-09 Score=100.81 Aligned_cols=54 Identities=30% Similarity=0.367 Sum_probs=43.6
Q ss_pred CCCCCccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
...|.+|+++++.++.++.+...+..+...++||+||||||||++++++|+.++
T Consensus 17 ~~~~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 17 TRPVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp -CCCCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCCCCCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 345678999999988777655554445567899999999999999999999886
No 63
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.93 E-value=3.2e-09 Score=100.51 Aligned_cols=99 Identities=22% Similarity=0.314 Sum_probs=72.7
Q ss_pred CccccccCCCCCccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHhC-----CcEEEEecCCcCCc
Q 035959 193 DTRQSAILDHPSTFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYLH-----FDVYDLELSSVEGN 267 (338)
Q Consensus 193 ~~w~~~~~~~p~~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l~-----~~~~~l~~~~~~~~ 267 (338)
..|.. ...|..|+.+++.+...+.+...+.......++|+||||||||++++++|+.+. ..+..++.++....
T Consensus 13 ~~~~~--k~rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~ 90 (340)
T 1sxj_C 13 LPWVE--KYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGI 90 (340)
T ss_dssp CCHHH--HTCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSH
T ss_pred CchHH--HhCCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccH
Confidence 35654 578999999999988888888777753223499999999999999999999873 24677777664444
Q ss_pred hHHHHHHHhc--------CCCcEEEEcCCCccCC
Q 035959 268 KHLRKVLIAT--------ENKSILVVGDIDCCTE 293 (338)
Q Consensus 268 ~~l~~~l~~~--------~~~~Il~iDeiD~~~~ 293 (338)
..++..+... ..+.|++|||+|.+..
T Consensus 91 ~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~ 124 (340)
T 1sxj_C 91 DVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN 124 (340)
T ss_dssp HHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH
T ss_pred HHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH
Confidence 4444433221 2478999999998853
No 64
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.92 E-value=3.6e-09 Score=110.65 Aligned_cols=93 Identities=24% Similarity=0.352 Sum_probs=74.8
Q ss_pred CCCCccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHh----------CCcEEEEecCCcCC----
Q 035959 201 DHPSTFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYL----------HFDVYDLELSSVEG---- 266 (338)
Q Consensus 201 ~~p~~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l----------~~~~~~l~~~~~~~---- 266 (338)
..|..|+.+++.++..+++++.+....+.++||+||||||||++++++|..+ +..++.+++..+..
T Consensus 180 ~~~~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~ 259 (758)
T 1r6b_X 180 ARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKY 259 (758)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCC
T ss_pred HhcCCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccc
Confidence 3456899999999999999998887777889999999999999999999987 56677777766542
Q ss_pred ----chHHHHHHHhcC--CCcEEEEcCCCccCC
Q 035959 267 ----NKHLRKVLIATE--NKSILVVGDIDCCTE 293 (338)
Q Consensus 267 ----~~~l~~~l~~~~--~~~Il~iDeiD~~~~ 293 (338)
...+..++..+. .++||||||+|.+.+
T Consensus 260 ~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~ 292 (758)
T 1r6b_X 260 RGDFEKRFKALLKQLEQDTNSILFIDEIHTIIG 292 (758)
T ss_dssp SSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTT
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEEechHHHhh
Confidence 245677777665 479999999999976
No 65
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.91 E-value=1.9e-09 Score=114.41 Aligned_cols=93 Identities=18% Similarity=0.360 Sum_probs=69.9
Q ss_pred CCCCccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHh----------CCcEEEEecCCcCC----
Q 035959 201 DHPSTFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYL----------HFDVYDLELSSVEG---- 266 (338)
Q Consensus 201 ~~p~~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l----------~~~~~~l~~~~~~~---- 266 (338)
..|..|+.+++.++..+++++.+.+..+++++|+||||||||++++++|+.+ +.+++.++++.+..
T Consensus 164 ~r~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~ 243 (854)
T 1qvr_A 164 AAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKY 243 (854)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------
T ss_pred HhcCCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCcc
Confidence 3467899999999999999998887777889999999999999999999998 78899999887752
Q ss_pred ----chHHHHHHHhc---CCCcEEEEcCCCccCC
Q 035959 267 ----NKHLRKVLIAT---ENKSILVVGDIDCCTE 293 (338)
Q Consensus 267 ----~~~l~~~l~~~---~~~~Il~iDeiD~~~~ 293 (338)
...+..++..+ ..++||||||+|.+.+
T Consensus 244 ~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~ 277 (854)
T 1qvr_A 244 RGEFEERLKAVIQEVVQSQGEVILFIDELHTVVG 277 (854)
T ss_dssp --CHHHHHHHHHHHHHTTCSSEEEEECCC-----
T ss_pred chHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhc
Confidence 23456666655 3578999999999976
No 66
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.91 E-value=2.2e-09 Score=102.00 Aligned_cols=89 Identities=18% Similarity=0.210 Sum_probs=66.2
Q ss_pred ccccccCChhHHHHHHHHHHh----hhcCceeeeCCCCCCcHHHHHHHHHHh---------CCcEEEEecCCcCCc----
Q 035959 205 TFDTLAMDTDMKKMIMDDLER----AWKRGYLLFGPPGTGKSSLIAAMANYL---------HFDVYDLELSSVEGN---- 267 (338)
Q Consensus 205 ~f~~l~~~~~~k~~i~~~l~~----~~~~g~LL~GppGtGKT~l~~aia~~l---------~~~~~~l~~~~~~~~---- 267 (338)
.++.+++.+...+.+...+.. ..+++++|+||||||||++++++++.+ +..++.+++....+.
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 96 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVA 96 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHH
Confidence 337788888888888887754 234679999999999999999999988 788889998764431
Q ss_pred ------------------hH-HHHHHHhc---CCCcEEEEcCCCccCC
Q 035959 268 ------------------KH-LRKVLIAT---ENKSILVVGDIDCCTE 293 (338)
Q Consensus 268 ------------------~~-l~~~l~~~---~~~~Il~iDeiD~~~~ 293 (338)
.. +..++... ..+.+|+|||+|.+..
T Consensus 97 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~ 144 (387)
T 2v1u_A 97 SAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPK 144 (387)
T ss_dssp HHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHH
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcc
Confidence 12 22222222 3467999999999965
No 67
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.91 E-value=1.9e-09 Score=106.16 Aligned_cols=94 Identities=16% Similarity=0.283 Sum_probs=63.0
Q ss_pred CCCCCcccccc-CChh--HHHHHHHHHHhhh-cCceeeeCCCCCCcHHHHHHHHHHh-----CCcEEEEecCCcCCc---
Q 035959 200 LDHPSTFDTLA-MDTD--MKKMIMDDLERAW-KRGYLLFGPPGTGKSSLIAAMANYL-----HFDVYDLELSSVEGN--- 267 (338)
Q Consensus 200 ~~~p~~f~~l~-~~~~--~k~~i~~~l~~~~-~~g~LL~GppGtGKT~l~~aia~~l-----~~~~~~l~~~~~~~~--- 267 (338)
+.+..+|++++ ++.. ....+......+. ..+++||||||||||||++++|+.+ +.+++.+++..+...
T Consensus 98 l~~~~tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~ 177 (440)
T 2z4s_A 98 LNPDYTFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVD 177 (440)
T ss_dssp CCTTCSGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHH
T ss_pred CCCCCChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHH
Confidence 44455899987 3322 2223333333333 4679999999999999999999998 788999987765310
Q ss_pred ----hHHHHHHHhcC-CCcEEEEcCCCccCC
Q 035959 268 ----KHLRKVLIATE-NKSILVVGDIDCCTE 293 (338)
Q Consensus 268 ----~~l~~~l~~~~-~~~Il~iDeiD~~~~ 293 (338)
.....+..... .++||||||+|.+..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~ 208 (440)
T 2z4s_A 178 SMKEGKLNEFREKYRKKVDILLIDDVQFLIG 208 (440)
T ss_dssp HHHTTCHHHHHHHHTTTCSEEEEECGGGGSS
T ss_pred HHHcccHHHHHHHhcCCCCEEEEeCcccccC
Confidence 01112222334 789999999999975
No 68
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.86 E-value=2.6e-09 Score=101.30 Aligned_cols=89 Identities=19% Similarity=0.297 Sum_probs=65.3
Q ss_pred ccccccCChhHHHHHHHHHHh----hhcCceeeeCCCCCCcHHHHHHHHHHh------CCcEEEEecCCcCC--------
Q 035959 205 TFDTLAMDTDMKKMIMDDLER----AWKRGYLLFGPPGTGKSSLIAAMANYL------HFDVYDLELSSVEG-------- 266 (338)
Q Consensus 205 ~f~~l~~~~~~k~~i~~~l~~----~~~~g~LL~GppGtGKT~l~~aia~~l------~~~~~~l~~~~~~~-------- 266 (338)
.++.+++.+...+.+.+.+.. ..++.++|+||||||||++++++++.+ +..++.+++....+
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i 97 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADL 97 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHH
Confidence 447788888888888877764 234578999999999999999999988 88888888653221
Q ss_pred --------------chH----HHHHHHhcCCCcEEEEcCCCccCC
Q 035959 267 --------------NKH----LRKVLIATENKSILVVGDIDCCTE 293 (338)
Q Consensus 267 --------------~~~----l~~~l~~~~~~~Il~iDeiD~~~~ 293 (338)
..+ +...+.....+.+|+|||+|.+..
T Consensus 98 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~ 142 (386)
T 2qby_A 98 LESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVK 142 (386)
T ss_dssp TTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHH
T ss_pred HHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhc
Confidence 112 222233333589999999999964
No 69
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.84 E-value=5.6e-09 Score=97.82 Aligned_cols=85 Identities=14% Similarity=0.229 Sum_probs=61.7
Q ss_pred cccCChhHHHHHHHHHHh--hhcCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCCchHHHHHHHh------
Q 035959 208 TLAMDTDMKKMIMDDLER--AWKRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEGNKHLRKVLIA------ 276 (338)
Q Consensus 208 ~l~~~~~~k~~i~~~l~~--~~~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~~~~l~~~l~~------ 276 (338)
.+++..+..+.+.+.+.. ....++||+||||||||++++++++.. +.+++.++|+.+... .+...+..
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~-l~~~~lfg~~~g~~ 81 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNES-LLESELFGHEKGAF 81 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHH-HHHHHHTCCCSSCC
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChH-HHHHHhcCcccccc
Confidence 456666677777777766 445789999999999999999999976 578999999876431 11111111
Q ss_pred ------------cCCCcEEEEcCCCccCC
Q 035959 277 ------------TENKSILVVGDIDCCTE 293 (338)
Q Consensus 277 ------------~~~~~Il~iDeiD~~~~ 293 (338)
.....+|||||||.+..
T Consensus 82 tg~~~~~~g~~~~a~~g~L~LDEi~~l~~ 110 (304)
T 1ojl_A 82 TGADKRREGRFVEADGGTLFLDEIGDISP 110 (304)
T ss_dssp C---CCCCCHHHHHTTSEEEEESCTTCCH
T ss_pred CchhhhhcCHHHhcCCCEEEEeccccCCH
Confidence 12457999999999864
No 70
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.84 E-value=9.7e-09 Score=97.08 Aligned_cols=54 Identities=20% Similarity=0.340 Sum_probs=44.4
Q ss_pred cCCCCCccccccCChhHHHHHHHHH-HhhhcCceeeeCCCCCCcHHHHHHHHHHh
Q 035959 199 ILDHPSTFDTLAMDTDMKKMIMDDL-ERAWKRGYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 199 ~~~~p~~f~~l~~~~~~k~~i~~~l-~~~~~~g~LL~GppGtGKT~l~~aia~~l 252 (338)
...+|.+|+++++.++..+.+...+ .......++|+||||||||++++++|+.+
T Consensus 6 ~kyrP~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 6 DKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp TTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred hccCCCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3678999999999998888887776 44322339999999999999999999964
No 71
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.82 E-value=3e-08 Score=94.36 Aligned_cols=86 Identities=16% Similarity=0.058 Sum_probs=64.1
Q ss_pred cccccCChhHHHHHHHHHHh----hhcC--ceeeeCCCCCCcHHHHHHHHHHh----CCcEEEEecCCcCCchH------
Q 035959 206 FDTLAMDTDMKKMIMDDLER----AWKR--GYLLFGPPGTGKSSLIAAMANYL----HFDVYDLELSSVEGNKH------ 269 (338)
Q Consensus 206 f~~l~~~~~~k~~i~~~l~~----~~~~--g~LL~GppGtGKT~l~~aia~~l----~~~~~~l~~~~~~~~~~------ 269 (338)
++.+++.+...+.+...+.. ..+. .++|+||||||||++++++++.+ +..++.+++....+...
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHH
Confidence 36788888888888887776 2224 78999999999999999999998 57788998776543111
Q ss_pred --------------------HHHHHHhcCCCcEEEEcCCCcc
Q 035959 270 --------------------LRKVLIATENKSILVVGDIDCC 291 (338)
Q Consensus 270 --------------------l~~~l~~~~~~~Il~iDeiD~~ 291 (338)
+...+.....+.+|+|||+|.+
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l 137 (389)
T 1fnn_A 96 RSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL 137 (389)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS
T ss_pred HHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc
Confidence 1122222345789999999998
No 72
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.82 E-value=2e-09 Score=101.18 Aligned_cols=89 Identities=25% Similarity=0.339 Sum_probs=56.4
Q ss_pred CCccccccCChhHHHHHHH----HHHhh---hcCceeeeCCCCCCcHHHHHHHHHHhC----CcEEEEecCCcCC-----
Q 035959 203 PSTFDTLAMDTDMKKMIMD----DLERA---WKRGYLLFGPPGTGKSSLIAAMANYLH----FDVYDLELSSVEG----- 266 (338)
Q Consensus 203 p~~f~~l~~~~~~k~~i~~----~l~~~---~~~g~LL~GppGtGKT~l~~aia~~l~----~~~~~l~~~~~~~----- 266 (338)
+.+|+++......+..+++ .+... ...+++|+||||||||+|+.|+|+.+. .++..+.+.++..
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~ 199 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNA 199 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCC
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHH
Confidence 4689998875533333333 33321 257899999999999999999998765 7777777654311
Q ss_pred --chHHHHHHHhcCCCcEEEEcCCCcc
Q 035959 267 --NKHLRKVLIATENKSILVVGDIDCC 291 (338)
Q Consensus 267 --~~~l~~~l~~~~~~~Il~iDeiD~~ 291 (338)
...+...+.......+||||||+..
T Consensus 200 ~~~~~~~~~~~~~~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 200 ISNGSVKEEIDAVKNVPVLILDDIGAE 226 (308)
T ss_dssp CC----CCTTHHHHTSSEEEEETCCC-
T ss_pred hccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 1111122223345689999999764
No 73
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.81 E-value=7.2e-09 Score=97.80 Aligned_cols=67 Identities=12% Similarity=0.238 Sum_probs=51.7
Q ss_pred hhcCceeeeCCCCCCcHHHHHHHHHHh----------CCcEEEEecCCcCCc----------------------hHHHHH
Q 035959 226 AWKRGYLLFGPPGTGKSSLIAAMANYL----------HFDVYDLELSSVEGN----------------------KHLRKV 273 (338)
Q Consensus 226 ~~~~g~LL~GppGtGKT~l~~aia~~l----------~~~~~~l~~~~~~~~----------------------~~l~~~ 273 (338)
..+.+++|+||||||||++++++++.+ ++.++.++|..+.+. ..+.++
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~ 122 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFY 122 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 445679999999999999999999998 356788898765431 235566
Q ss_pred HHhc----CCCcEEEEcCCCccC
Q 035959 274 LIAT----ENKSILVVGDIDCCT 292 (338)
Q Consensus 274 l~~~----~~~~Il~iDeiD~~~ 292 (338)
|... ..+.||+|||+|.+.
T Consensus 123 f~~~~~~~~~~~ii~lDE~d~l~ 145 (318)
T 3te6_A 123 ITNVPKAKKRKTLILIQNPENLL 145 (318)
T ss_dssp HHHSCGGGSCEEEEEEECCSSSC
T ss_pred HHHhhhccCCceEEEEecHHHhh
Confidence 6653 357899999999996
No 74
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.78 E-value=1.8e-08 Score=105.32 Aligned_cols=96 Identities=17% Similarity=0.320 Sum_probs=71.5
Q ss_pred cccCChhHHHHHHHHHHhhh--------c-CceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCCc-----------
Q 035959 208 TLAMDTDMKKMIMDDLERAW--------K-RGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGN----------- 267 (338)
Q Consensus 208 ~l~~~~~~k~~i~~~l~~~~--------~-~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~~----------- 267 (338)
.+++.++.++.+...+.... + ..+||+||||||||++++++|+.++.+++.++++++...
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~ 538 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPP 538 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCS
T ss_pred hccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCC
Confidence 46677777777776665421 2 258999999999999999999999999999999876431
Q ss_pred --------hHHHHHHHhcCCCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhc
Q 035959 268 --------KHLRKVLIATENKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTD 326 (338)
Q Consensus 268 --------~~l~~~l~~~~~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iD 326 (338)
..+...+.. ..++||||||||.+.+ ..++.||..||
T Consensus 539 g~~g~~~~~~l~~~~~~-~~~~vl~lDEi~~~~~----------------------~~~~~Ll~~le 582 (758)
T 1r6b_X 539 GYVGFDQGGLLTDAVIK-HPHAVLLLDEIEKAHP----------------------DVFNILLQVMD 582 (758)
T ss_dssp CSHHHHHTTHHHHHHHH-CSSEEEEEETGGGSCH----------------------HHHHHHHHHHH
T ss_pred CCcCccccchHHHHHHh-CCCcEEEEeCccccCH----------------------HHHHHHHHHhc
Confidence 123333333 4579999999998743 46677888877
No 75
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.77 E-value=1.6e-08 Score=105.89 Aligned_cols=98 Identities=16% Similarity=0.291 Sum_probs=73.3
Q ss_pred ccccCChhHHHHHHHHHHhhh--------cC-ceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCCc-----hH
Q 035959 207 DTLAMDTDMKKMIMDDLERAW--------KR-GYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEGN-----KH 269 (338)
Q Consensus 207 ~~l~~~~~~k~~i~~~l~~~~--------~~-g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~~-----~~ 269 (338)
+.+++.++.++.+...+.... +. .+||+||||||||++++++|+.+ +.+++.++++++... ..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~~~ 570 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGGQ 570 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC---
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccccch
Confidence 456788888888877777621 11 59999999999999999999998 678999999987642 23
Q ss_pred HHHHHHhcCCCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcC
Q 035959 270 LRKVLIATENKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDG 327 (338)
Q Consensus 270 l~~~l~~~~~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDg 327 (338)
+...+.. .+.+||||||||.+.+ ..++.||+.||.
T Consensus 571 l~~~~~~-~~~~vl~lDEi~~~~~----------------------~~~~~Ll~~le~ 605 (758)
T 3pxi_A 571 LTEKVRR-KPYSVVLLDAIEKAHP----------------------DVFNILLQVLED 605 (758)
T ss_dssp CHHHHHH-CSSSEEEEECGGGSCH----------------------HHHHHHHHHHHH
T ss_pred hhHHHHh-CCCeEEEEeCccccCH----------------------HHHHHHHHHhcc
Confidence 3333333 4678999999998743 556778888874
No 76
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.77 E-value=1.4e-08 Score=85.19 Aligned_cols=81 Identities=17% Similarity=0.199 Sum_probs=57.4
Q ss_pred CccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCCchHHHHHHHhcCCC
Q 035959 204 STFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEGNKHLRKVLIATENK 280 (338)
Q Consensus 204 ~~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~~~~l~~~l~~~~~~ 280 (338)
.+|+++.... .+.++..+.......++|+||+|+|||+|++++++.+ |..+..++..++.... ...++
T Consensus 14 ~~~~~f~~g~--n~~~~~~l~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~~-------~~~~~ 84 (149)
T 2kjq_A 14 PSFDKFLGTE--NAELVYVLRHKHGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLTD-------AAFEA 84 (149)
T ss_dssp CCCCCCCSCC--THHHHHHCCCCCCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCCG-------GGGGC
T ss_pred cchhhcCcCc--cHHHHHHHHhcCCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHHH-------HHhCC
Confidence 3566665422 2233444433334568999999999999999999988 7778888888766541 13468
Q ss_pred cEEEEcCCCccCC
Q 035959 281 SILVVGDIDCCTE 293 (338)
Q Consensus 281 ~Il~iDeiD~~~~ 293 (338)
.+|+|||++.+..
T Consensus 85 ~lLilDE~~~~~~ 97 (149)
T 2kjq_A 85 EYLAVDQVEKLGN 97 (149)
T ss_dssp SEEEEESTTCCCS
T ss_pred CEEEEeCccccCh
Confidence 9999999998654
No 77
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.76 E-value=9.7e-09 Score=97.84 Aligned_cols=87 Identities=16% Similarity=0.210 Sum_probs=63.8
Q ss_pred ccccCChhHHHHHHHHHHh----hhcCceeeeCCCCCCcHHHHHHHHHHh-----------CCcEEEEecCCcC-Cc---
Q 035959 207 DTLAMDTDMKKMIMDDLER----AWKRGYLLFGPPGTGKSSLIAAMANYL-----------HFDVYDLELSSVE-GN--- 267 (338)
Q Consensus 207 ~~l~~~~~~k~~i~~~l~~----~~~~g~LL~GppGtGKT~l~~aia~~l-----------~~~~~~l~~~~~~-~~--- 267 (338)
+.+++.++..+.+...+.. ..+++++|+||||||||++++++++.+ +..++.+++.... +.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 6788888888888877765 224579999999999999999999988 8899999876543 21
Q ss_pred --------------------hH-HHHHHHhcC-CCcEEEEcCCCccCC
Q 035959 268 --------------------KH-LRKVLIATE-NKSILVVGDIDCCTE 293 (338)
Q Consensus 268 --------------------~~-l~~~l~~~~-~~~Il~iDeiD~~~~ 293 (338)
.. +..+..... .+.+|+|||+|.+..
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~ 147 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVK 147 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHH
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhcc
Confidence 11 222222233 233999999999864
No 78
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.75 E-value=1.1e-08 Score=103.40 Aligned_cols=87 Identities=21% Similarity=0.275 Sum_probs=62.1
Q ss_pred ccccCChhHHHHHHHHHHh------hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCCch------------
Q 035959 207 DTLAMDTDMKKMIMDDLER------AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGNK------------ 268 (338)
Q Consensus 207 ~~l~~~~~~k~~i~~~l~~------~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~~~------------ 268 (338)
+++++.+++++.+.+.+.. .....++|+||||||||++++++|..++.++..+++..+....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~ 160 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGA 160 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-----------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhcc
Confidence 4577778888777655443 1134689999999999999999999999999999887754321
Q ss_pred ---HHHHHHHhcC-CCcEEEEcCCCccCC
Q 035959 269 ---HLRKVLIATE-NKSILVVGDIDCCTE 293 (338)
Q Consensus 269 ---~l~~~l~~~~-~~~Il~iDeiD~~~~ 293 (338)
.+...+..+. ...||||||||.+..
T Consensus 161 ~~~~~~~~~~~a~~~~~vl~lDEid~l~~ 189 (543)
T 3m6a_A 161 MPGRIIQGMKKAGKLNPVFLLDEIDKMSS 189 (543)
T ss_dssp ---CHHHHHHTTCSSSEEEEEEESSSCC-
T ss_pred CchHHHHHHHHhhccCCEEEEhhhhhhhh
Confidence 2334444443 456999999999976
No 79
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.72 E-value=1.7e-08 Score=100.03 Aligned_cols=87 Identities=21% Similarity=0.357 Sum_probs=66.9
Q ss_pred CCCCCccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHh----------CCcEEEEecCCcC---C
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYL----------HFDVYDLELSSVE---G 266 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l----------~~~~~~l~~~~~~---~ 266 (338)
...|..|+.+++.++..+.+++.+.+..+.++||+||||||||++++++|..+ +.+++.+++..-. .
T Consensus 173 ~~r~~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~ 252 (468)
T 3pxg_A 173 IAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEF 252 (468)
T ss_dssp HTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------
T ss_pred HHhcCCCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCccccchH
Confidence 35677899999999999999999887777889999999999999999999997 7788888876211 1
Q ss_pred chHHHHHHHhcC--CCcEEEEc
Q 035959 267 NKHLRKVLIATE--NKSILVVG 286 (338)
Q Consensus 267 ~~~l~~~l~~~~--~~~Il~iD 286 (338)
...+..++..+. .+.|||||
T Consensus 253 e~~~~~~~~~~~~~~~~iLfiD 274 (468)
T 3pxg_A 253 EDRLKKVMDEIRQAGNIILFID 274 (468)
T ss_dssp CTTHHHHHHHHHTCCCCEEEEC
T ss_pred HHHHHHHHHHHHhcCCeEEEEe
Confidence 235566666553 67899999
No 80
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.72 E-value=2.7e-08 Score=105.51 Aligned_cols=97 Identities=19% Similarity=0.348 Sum_probs=72.0
Q ss_pred ccccCChhHHHHHHHHHHhhh--------c-CceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCCc-------
Q 035959 207 DTLAMDTDMKKMIMDDLERAW--------K-RGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEGN------- 267 (338)
Q Consensus 207 ~~l~~~~~~k~~i~~~l~~~~--------~-~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~~------- 267 (338)
+.+++.++..+.+...+.... + ..+||+||||||||++++++|+.+ +.+++.++++++...
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~ 637 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLI 637 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC-
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHc
Confidence 557888888887777776521 1 368999999999999999999999 788999999876542
Q ss_pred ------------hHHHHHHHhcCCCcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhc
Q 035959 268 ------------KHLRKVLIATENKSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTD 326 (338)
Q Consensus 268 ------------~~l~~~l~~~~~~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iD 326 (338)
..+...+.. ...++|||||||.+.. ..++.||..||
T Consensus 638 g~~~~~~G~~~~g~l~~~~~~-~~~~vl~lDEi~~l~~----------------------~~~~~Ll~~l~ 685 (854)
T 1qvr_A 638 GAPPGYVGYEEGGQLTEAVRR-RPYSVILFDEIEKAHP----------------------DVFNILLQILD 685 (854)
T ss_dssp -------------CHHHHHHH-CSSEEEEESSGGGSCH----------------------HHHHHHHHHHT
T ss_pred CCCCCCcCccccchHHHHHHh-CCCeEEEEecccccCH----------------------HHHHHHHHHhc
Confidence 112222222 3578999999998743 46677888887
No 81
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.64 E-value=1.1e-08 Score=90.41 Aligned_cols=60 Identities=18% Similarity=0.276 Sum_probs=41.1
Q ss_pred hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCCchHHHHHHHhcCCCcEEEEcCCCcc
Q 035959 226 AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKVLIATENKSILVVGDIDCC 291 (338)
Q Consensus 226 ~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~~~~l~~~l~~~~~~~Il~iDeiD~~ 291 (338)
|.++++|+|||||||||+++.|+|+.+...+... .. +... ..+..+....|++|||+|..
T Consensus 56 Pkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~f--an--s~s~--f~l~~l~~~kIiiLDEad~~ 115 (212)
T 1tue_A 56 PKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISF--VN--STSH--FWLEPLTDTKVAMLDDATTT 115 (212)
T ss_dssp TTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCC--CC--SSSC--GGGGGGTTCSSEEEEEECHH
T ss_pred CcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeE--Ee--ccch--hhhcccCCCCEEEEECCCch
Confidence 4567899999999999999999999997654322 11 1110 01223345679999999953
No 82
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.64 E-value=1.4e-07 Score=89.24 Aligned_cols=80 Identities=23% Similarity=0.298 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHh-hhcCceeeeCCCCCCcHHHHHHHHHHhC------------------------CcEEEEecC---CcC
Q 035959 214 DMKKMIMDDLER-AWKRGYLLFGPPGTGKSSLIAAMANYLH------------------------FDVYDLELS---SVE 265 (338)
Q Consensus 214 ~~k~~i~~~l~~-~~~~g~LL~GppGtGKT~l~~aia~~l~------------------------~~~~~l~~~---~~~ 265 (338)
+..+.+...+.. ..+..+||+||||||||++++++|+.+. .+++.++.. .-.
T Consensus 9 ~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~ 88 (334)
T 1a5t_A 9 PDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTL 88 (334)
T ss_dssp HHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSB
T ss_pred HHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCC
Confidence 445556666654 2345699999999999999999999874 346666654 223
Q ss_pred CchHHHHHHHhcC------CCcEEEEcCCCccCC
Q 035959 266 GNKHLRKVLIATE------NKSILVVGDIDCCTE 293 (338)
Q Consensus 266 ~~~~l~~~l~~~~------~~~Il~iDeiD~~~~ 293 (338)
..+.++.++.... .+.|++|||+|.+..
T Consensus 89 ~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~ 122 (334)
T 1a5t_A 89 GVDAVREVTEKLNEHARLGGAKVVWVTDAALLTD 122 (334)
T ss_dssp CHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCH
T ss_pred CHHHHHHHHHHHhhccccCCcEEEEECchhhcCH
Confidence 3456777776653 478999999999854
No 83
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.61 E-value=5.1e-08 Score=102.05 Aligned_cols=87 Identities=21% Similarity=0.368 Sum_probs=67.5
Q ss_pred CCCCCccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHh----------CCcEEEEecCCc-C--C
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYL----------HFDVYDLELSSV-E--G 266 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l----------~~~~~~l~~~~~-~--~ 266 (338)
...|..++.+++.++..+++++.+....+.++||+||||||||++++++|+.+ +..++.+++..- . .
T Consensus 173 ~~~~~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~~~~G~~ 252 (758)
T 3pxi_A 173 IAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEF 252 (758)
T ss_dssp HTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------
T ss_pred HHhhCCCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecccccccchH
Confidence 34567899999999999999999988777899999999999999999999997 778888877211 1 1
Q ss_pred chHHHHHHHhc--CCCcEEEEc
Q 035959 267 NKHLRKVLIAT--ENKSILVVG 286 (338)
Q Consensus 267 ~~~l~~~l~~~--~~~~Il~iD 286 (338)
...++.++..+ ..++|||||
T Consensus 253 e~~l~~~~~~~~~~~~~iLfiD 274 (758)
T 3pxi_A 253 EDRLKKVMDEIRQAGNIILFID 274 (758)
T ss_dssp CTTHHHHHHHHHTCCCCEEEEC
T ss_pred HHHHHHHHHHHHhcCCEEEEEc
Confidence 33566666655 368999999
No 84
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.61 E-value=8.4e-08 Score=89.96 Aligned_cols=81 Identities=15% Similarity=0.189 Sum_probs=58.8
Q ss_pred hhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHh------CCcEEEEecCC-cCCchHHHHHHHhcC------C
Q 035959 213 TDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYL------HFDVYDLELSS-VEGNKHLRKVLIATE------N 279 (338)
Q Consensus 213 ~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l------~~~~~~l~~~~-~~~~~~l~~~l~~~~------~ 279 (338)
++..+.+...+.......||||||||||||+++.++|+.+ ..+++.++... -...+.++.++..+. .
T Consensus 3 ~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~ 82 (305)
T 2gno_A 3 KDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYT 82 (305)
T ss_dssp -CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSS
T ss_pred HHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCC
Confidence 3444555555554334579999999999999999999874 45788888764 334556777766553 4
Q ss_pred CcEEEEcCCCccCC
Q 035959 280 KSILVVGDIDCCTE 293 (338)
Q Consensus 280 ~~Il~iDeiD~~~~ 293 (338)
..|+||||+|.+..
T Consensus 83 ~kvviIdead~lt~ 96 (305)
T 2gno_A 83 RKYVIVHDCERMTQ 96 (305)
T ss_dssp SEEEEETTGGGBCH
T ss_pred ceEEEeccHHHhCH
Confidence 67999999999954
No 85
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.50 E-value=1.5e-07 Score=93.98 Aligned_cols=81 Identities=14% Similarity=0.110 Sum_probs=50.8
Q ss_pred ccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHhCC--cEEEEecCCcCCchHH-----------HHHHH
Q 035959 209 LAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYLHF--DVYDLELSSVEGNKHL-----------RKVLI 275 (338)
Q Consensus 209 l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l~~--~~~~l~~~~~~~~~~l-----------~~~l~ 275 (338)
+++.++.++.+...+.. ..++||+||||||||++++++|+.++. ++..+.+.. .+.+++ ...+.
T Consensus 24 ivGq~~~i~~l~~al~~--~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~-~t~~dL~G~~~~~~~~~~g~~~ 100 (500)
T 3nbx_X 24 LYERSHAIRLCLLAALS--GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRF-STPEEVFGPLSIQALKDEGRYE 100 (500)
T ss_dssp CSSCHHHHHHHHHHHHH--TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTT-CCHHHHHCCBC----------C
T ss_pred hHHHHHHHHHHHHHHhc--CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhc-CCHHHhcCcccHHHHhhchhHH
Confidence 45667766666655543 468999999999999999999998854 344444432 111111 11122
Q ss_pred hcC-----CCcEEEEcCCCccC
Q 035959 276 ATE-----NKSILVVGDIDCCT 292 (338)
Q Consensus 276 ~~~-----~~~Il~iDeiD~~~ 292 (338)
... .++|||||||+.+.
T Consensus 101 ~~~~g~l~~~~IL~IDEI~r~~ 122 (500)
T 3nbx_X 101 RLTSGYLPEAEIVFLDEIWKAG 122 (500)
T ss_dssp BCCTTSGGGCSEEEEESGGGCC
T ss_pred hhhccCCCcceeeeHHhHhhhc
Confidence 111 35689999998764
No 86
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.38 E-value=1.2e-07 Score=89.30 Aligned_cols=91 Identities=12% Similarity=0.079 Sum_probs=51.9
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcEEEEec--CCcC-----C-chHHHHHHHhcCCCcEEEEcCCCccCCccccccc
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYDLEL--SSVE-----G-NKHLRKVLIATENKSILVVGDIDCCTELQDRSAQ 300 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~--~~~~-----~-~~~l~~~l~~~~~~~Il~iDeiD~~~~~~~r~~~ 300 (338)
+.++|+||||||||+|+.++|...+..+.++++ .+.. . +..+..+........+||||+|+.+.. .+.+.
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~LLVIDsI~aL~~--~~~~~ 201 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHRVIVIDSLKNVIG--AAGGN 201 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCSEEEEECCTTTC--------
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCCEEEEeccccccc--ccccc
Confidence 446999999999999999999887666555555 2211 1 112222333332222999999999865 22211
Q ss_pred ccCCCCCCCCCCcchhhHHHHHHHhcCCc
Q 035959 301 ARTASPDWHSPKRDQITLSGLLNFTDGLW 329 (338)
Q Consensus 301 ~~~~~~~~~~~~~~~~~ls~lLn~iDgl~ 329 (338)
.. .+.....+..+|..|+++.
T Consensus 202 s~--------~G~v~~~lrqlL~~L~~~~ 222 (331)
T 2vhj_A 202 TT--------SGGISRGAFDLLSDIGAMA 222 (331)
T ss_dssp -------------CCHHHHHHHHHHHHHH
T ss_pred cc--------cchHHHHHHHHHHHHHHHH
Confidence 10 1222456677777776553
No 87
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.37 E-value=6.2e-07 Score=85.95 Aligned_cols=87 Identities=10% Similarity=0.122 Sum_probs=60.2
Q ss_pred ccccCChhHHHHHHHHH-Hh---h---hcCceee--eCCCCCCcHHHHHHHHHHh---------CCcEEEEecCCcCCc-
Q 035959 207 DTLAMDTDMKKMIMDDL-ER---A---WKRGYLL--FGPPGTGKSSLIAAMANYL---------HFDVYDLELSSVEGN- 267 (338)
Q Consensus 207 ~~l~~~~~~k~~i~~~l-~~---~---~~~g~LL--~GppGtGKT~l~~aia~~l---------~~~~~~l~~~~~~~~- 267 (338)
+.+++.+...+.+.+.+ .. . .++.+++ +||||||||+|++++++.+ +..++.+++....+.
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 56788877777777777 43 1 2346789 9999999999999999877 456778886432211
Q ss_pred ---------------------hH----HHHHHHhcCCCcEEEEcCCCccCC
Q 035959 268 ---------------------KH----LRKVLIATENKSILVVGDIDCCTE 293 (338)
Q Consensus 268 ---------------------~~----l~~~l~~~~~~~Il~iDeiD~~~~ 293 (338)
.. +...+.....+.+|+|||+|.+..
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~ 152 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLS 152 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHS
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhh
Confidence 11 122222224578999999999864
No 88
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.35 E-value=1.4e-06 Score=81.34 Aligned_cols=55 Identities=24% Similarity=0.184 Sum_probs=45.4
Q ss_pred ccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCC
Q 035959 205 TFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSS 263 (338)
Q Consensus 205 ~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~ 263 (338)
.-+.+++.+...+.+.+ +.. +.++++||+|+|||+|++.+++.++..++.+++..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 65 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK 65 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred CHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence 44667888887788877 664 57899999999999999999999887788888764
No 89
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.28 E-value=7.5e-07 Score=99.59 Aligned_cols=94 Identities=13% Similarity=0.141 Sum_probs=64.5
Q ss_pred eeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcC----------------------CchHHHHHHHh--cCCCcEE
Q 035959 231 YLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVE----------------------GNKHLRKVLIA--TENKSIL 283 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~----------------------~~~~l~~~l~~--~~~~~Il 283 (338)
+|+|||||||||.|+.++|.+. |-+..+++..... ++..++.++.. ...+++|
T Consensus 1085 ~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i 1164 (1706)
T 3cmw_A 1085 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVI 1164 (1706)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEE
T ss_pred EEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEE
Confidence 9999999999999999999876 4566677665522 12234444432 3479999
Q ss_pred EEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCc
Q 035959 284 VVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLW 329 (338)
Q Consensus 284 ~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~ 329 (338)
++|+||++.+ .|.......+ ...+...+.++++|..|||+.
T Consensus 1165 ~~d~~~al~~--~~~~~g~~~~---~~~~~~~r~~~q~l~~~~~~~ 1205 (1706)
T 3cmw_A 1165 VVDSVAALTP--KAEIEGEIGD---SHMGLAARMMSQAMRKLAGNL 1205 (1706)
T ss_dssp EESCGGGCCC--HHHHHSCTTC---CCTTHHHHHHHHHHHHHHHHH
T ss_pred EeCchHhcCc--cccccccccc---ccccHHHHHHHHHHHHHHhhh
Confidence 9999999998 4432211110 112445668999999999954
No 90
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.22 E-value=2.8e-06 Score=86.63 Aligned_cols=52 Identities=35% Similarity=0.385 Sum_probs=43.9
Q ss_pred CCCCCccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 200 LDHPSTFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 200 ~~~p~~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
...|..|+.+++....++.+...+.. ...++|+||||||||++++++|..+.
T Consensus 34 ~~rp~~l~~i~G~~~~l~~l~~~i~~--g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 34 EVPEKLIDQVIGQEHAVEVIKTAANQ--KRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CCCSSHHHHCCSCHHHHHHHHHHHHT--TCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred cccccccceEECchhhHhhccccccC--CCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 45678999999998888777666653 36899999999999999999999885
No 91
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.21 E-value=5.9e-06 Score=96.12 Aligned_cols=67 Identities=28% Similarity=0.486 Sum_probs=52.3
Q ss_pred hhcCceeeeCCCCCCcHHHH-HHHHHHhCCcEEEEecCCcCCchHHHHHHHhc-----------------CCCcEEEEcC
Q 035959 226 AWKRGYLLFGPPGTGKSSLI-AAMANYLHFDVYDLELSSVEGNKHLRKVLIAT-----------------ENKSILVVGD 287 (338)
Q Consensus 226 ~~~~g~LL~GppGtGKT~l~-~aia~~l~~~~~~l~~~~~~~~~~l~~~l~~~-----------------~~~~Il~iDe 287 (338)
..++++||+||||||||++| +++++..++.+..++++...+...+.+.+... .++.||||||
T Consensus 1265 ~~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDE 1344 (2695)
T 4akg_A 1265 NSKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDE 1344 (2695)
T ss_dssp HHTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEET
T ss_pred HCCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEecc
Confidence 34589999999999999999 55555557889999999888777776666532 1357999999
Q ss_pred CCccC
Q 035959 288 IDCCT 292 (338)
Q Consensus 288 iD~~~ 292 (338)
||...
T Consensus 1345 inmp~ 1349 (2695)
T 4akg_A 1345 INLPK 1349 (2695)
T ss_dssp TTCSC
T ss_pred ccccc
Confidence 99753
No 92
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=98.19 E-value=9.8e-08 Score=97.38 Aligned_cols=84 Identities=19% Similarity=0.252 Sum_probs=51.1
Q ss_pred ccCChhHHHHHHHHHHhhhc-----------CceeeeCCCCCCcHHHHHHHHHHhCCcEEEEec----CCcCC---chHH
Q 035959 209 LAMDTDMKKMIMDDLERAWK-----------RGYLLFGPPGTGKSSLIAAMANYLHFDVYDLEL----SSVEG---NKHL 270 (338)
Q Consensus 209 l~~~~~~k~~i~~~l~~~~~-----------~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~----~~~~~---~~~l 270 (338)
+++.+.+|+.+...+....+ .++||+||||||||++++++|+.++...+.... ..+.. ....
T Consensus 297 I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~ 376 (595)
T 3f9v_A 297 IYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKG 376 (595)
T ss_dssp TSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGG
T ss_pred hcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccc
Confidence 45666666666444432211 169999999999999999999998766544221 11110 0000
Q ss_pred -------HHHHHhcCCCcEEEEcCCCccCC
Q 035959 271 -------RKVLIATENKSILVVGDIDCCTE 293 (338)
Q Consensus 271 -------~~~l~~~~~~~Il~iDeiD~~~~ 293 (338)
...+. .+.++||+|||||.+.+
T Consensus 377 ~g~~~~~~G~l~-~A~~gil~IDEid~l~~ 405 (595)
T 3f9v_A 377 TGEYYLEAGALV-LADGGIAVIDEIDKMRD 405 (595)
T ss_dssp TSSCSEEECHHH-HHSSSEECCTTTTCCCS
T ss_pred cccccccCCeeE-ecCCCcEEeehhhhCCH
Confidence 00111 12468999999999865
No 93
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.17 E-value=4.7e-06 Score=77.65 Aligned_cols=55 Identities=22% Similarity=0.193 Sum_probs=43.4
Q ss_pred CccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecC
Q 035959 204 STFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELS 262 (338)
Q Consensus 204 ~~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~ 262 (338)
..-+.+++.+...+.+.+.+.. .+.++++||+|+|||+|++.+++..+ ++.+++.
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~--~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~ 63 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLEN--YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCR 63 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHH--CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHH
T ss_pred CChHhcCChHHHHHHHHHHHhc--CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEee
Confidence 3446678888888888777764 26789999999999999999999876 6666654
No 94
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.12 E-value=6.7e-06 Score=79.22 Aligned_cols=89 Identities=22% Similarity=0.270 Sum_probs=59.8
Q ss_pred hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCCchHHHHHHHhcCCCcEEEEcCCCccCCcccccccccCCC
Q 035959 226 AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKVLIATENKSILVVGDIDCCTELQDRSAQARTAS 305 (338)
Q Consensus 226 ~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~~~~l~~~l~~~~~~~Il~iDeiD~~~~~~~r~~~~~~~~ 305 (338)
+.++.++|+||||+|||+++++++..++..++.++... ......+....+..++++||++..... .|+-..
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~----~~~~~~lg~~~q~~~~l~dd~~~~~~~-~r~l~~---- 237 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL----DRLNFELGVAIDQFLVVFEDVKGTGGE-SRDLPS---- 237 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT----TTHHHHHGGGTTCSCEEETTCCCSTTT-TTTCCC----
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc----hhHHHHHHHhcchhHHHHHHHHHHHHH-Hhhccc----
Confidence 45567899999999999999999999887765533222 222223444567788899999998763 221110
Q ss_pred CCCCCCCcchhhHHHHHHHhcCCc
Q 035959 306 PDWHSPKRDQITLSGLLNFTDGLW 329 (338)
Q Consensus 306 ~~~~~~~~~~~~ls~lLn~iDgl~ 329 (338)
+....+++.+.+.+||..
T Consensus 238 ------~~~~~~~~~l~~~ldG~v 255 (377)
T 1svm_A 238 ------GQGINNLDNLRDYLDGSV 255 (377)
T ss_dssp ------CSHHHHHHTTHHHHHCSS
T ss_pred ------cCcchHHHHHHHHhcCCC
Confidence 011236688899999853
No 95
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.09 E-value=6.7e-06 Score=95.67 Aligned_cols=85 Identities=19% Similarity=0.174 Sum_probs=68.1
Q ss_pred ccCChhHHHHHHHHHHh-hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCCchHHHHHHHhcC-CCcEEEEc
Q 035959 209 LAMDTDMKKMIMDDLER-AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKVLIATE-NKSILVVG 286 (338)
Q Consensus 209 l~~~~~~k~~i~~~l~~-~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~~~~l~~~l~~~~-~~~Il~iD 286 (338)
++.-|-..+..+..+.+ ....|.++.||||||||.+++++|+.+|.+++.++|++-.+...+.++|..+. ..+++++|
T Consensus 625 lViTPltdr~~~tl~~Al~~~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~lg~~~~g~~~~Gaw~~~D 704 (2695)
T 4akg_A 625 LIYTPLLLIGFATLTDSLHQKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLLVGITQIGAWGCFD 704 (2695)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred ceecHHHHHHHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHhhHHHHHHHhcCCEeeeh
Confidence 45555544443333333 34578899999999999999999999999999999999888888888887765 57999999
Q ss_pred CCCccCC
Q 035959 287 DIDCCTE 293 (338)
Q Consensus 287 eiD~~~~ 293 (338)
|++.+..
T Consensus 705 E~nr~~~ 711 (2695)
T 4akg_A 705 EFNRLDE 711 (2695)
T ss_dssp TTTSSCH
T ss_pred hhhhcCh
Confidence 9999854
No 96
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.08 E-value=4.1e-06 Score=94.80 Aligned_cols=100 Identities=12% Similarity=0.091 Sum_probs=65.9
Q ss_pred hcCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcC---------------------CchHHHHHHHhc---CC
Q 035959 227 WKRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVE---------------------GNKHLRKVLIAT---EN 279 (338)
Q Consensus 227 ~~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~---------------------~~~~l~~~l~~~---~~ 279 (338)
.+++++|+||||||||+|+.+++... |..+.+++..... ..+++.+.+... .+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~~ 1505 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGA 1505 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhcCC
Confidence 45679999999999999999998775 5678888776532 112233333333 58
Q ss_pred CcEEEEcCCCccCCcccccccccCCCCCCCCCCcchhhHHHHHHHhcCCcCC
Q 035959 280 KSILVVGDIDCCTELQDRSAQARTASPDWHSPKRDQITLSGLLNFTDGLWSS 331 (338)
Q Consensus 280 ~~Il~iDeiD~~~~~~~r~~~~~~~~~~~~~~~~~~~~ls~lLn~iDgl~s~ 331 (338)
+++||||+++.+.+..+-++... + .......+.++++|..|++....
T Consensus 1506 ~~lVVIDsi~al~p~~~~~g~~~--~---~~~~~~~R~lsqlL~~L~~~~~~ 1552 (2050)
T 3cmu_A 1506 VDVIVVDSVAALTPKAEIEGEIG--D---SHMGLAARMMSQAMRKLAGNLKQ 1552 (2050)
T ss_dssp CSEEEESCGGGCCCHHHHHSCTT--C---CCTTHHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEcChhHhccccccccccc--c---cccchHHHHHHHHHHHHHHHHHh
Confidence 99999999999987211111111 0 00111356789999999987654
No 97
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.08 E-value=5.1e-06 Score=76.20 Aligned_cols=69 Identities=16% Similarity=0.199 Sum_probs=44.3
Q ss_pred HHHHHHHHh--hhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCCchHHHHHHHhcCCCcEEEEcCCCccC
Q 035959 217 KMIMDDLER--AWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKVLIATENKSILVVGDIDCCT 292 (338)
Q Consensus 217 ~~i~~~l~~--~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~~~~l~~~l~~~~~~~Il~iDeiD~~~ 292 (338)
..+...+.. +++++++||||||||||+++.|+|+.++.- -.++.+.. ...+.....+.|++.||....-
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~~l~-G~vn~~~~------~f~l~~~~~k~i~l~Ee~~~~~ 161 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPFY-GCVNWTNE------NFPFNDCVDKMVIWWEEGKMTA 161 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSSCE-EECCTTCS------SCTTGGGSSCSEEEECSCCEET
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhhccc-ceeecccc------ccccccccccEEEEeccccchh
Confidence 344444544 335689999999999999999999987652 22233211 1123444566778877776553
No 98
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=97.91 E-value=3.5e-05 Score=74.27 Aligned_cols=85 Identities=14% Similarity=0.223 Sum_probs=60.0
Q ss_pred cccCChhHHHHHHHHHHh--hhcCceeeeCCCCCCcHHHHHHHHHHhC---CcEEEEecCCcCCchHHHHHHHh------
Q 035959 208 TLAMDTDMKKMIMDDLER--AWKRGYLLFGPPGTGKSSLIAAMANYLH---FDVYDLELSSVEGNKHLRKVLIA------ 276 (338)
Q Consensus 208 ~l~~~~~~k~~i~~~l~~--~~~~g~LL~GppGtGKT~l~~aia~~l~---~~~~~l~~~~~~~~~~l~~~l~~------ 276 (338)
.+++.....+++.+.+.. .....++++|++||||+.+++++..... .+++.++|+.+.. ..+...+..
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~-~~~~~elfg~~~g~~ 216 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPR-DIFEAELFGYEKGAF 216 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCH-HHHHHHHHCBCTTSS
T ss_pred hhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCH-HHHHHHhcCCCCCCC
Confidence 445555555666666655 3345789999999999999999998764 6899999998653 222222222
Q ss_pred ------------cCCCcEEEEcCCCccCC
Q 035959 277 ------------TENKSILVVGDIDCCTE 293 (338)
Q Consensus 277 ------------~~~~~Il~iDeiD~~~~ 293 (338)
.....+||||||+.+..
T Consensus 217 tga~~~~~g~~~~a~~gtlfldei~~l~~ 245 (387)
T 1ny5_A 217 TGAVSSKEGFFELADGGTLFLDEIGELSL 245 (387)
T ss_dssp TTCCSCBCCHHHHTTTSEEEEESGGGCCH
T ss_pred CCcccccCCceeeCCCcEEEEcChhhCCH
Confidence 13467999999999964
No 99
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=97.90 E-value=6.5e-05 Score=71.93 Aligned_cols=86 Identities=15% Similarity=0.193 Sum_probs=59.6
Q ss_pred cccCChhHHHHHHHHHHh--hhcCceeeeCCCCCCcHHHHHHHHHHhCCc--EEEEecCCcCCchHHHHHH---------
Q 035959 208 TLAMDTDMKKMIMDDLER--AWKRGYLLFGPPGTGKSSLIAAMANYLHFD--VYDLELSSVEGNKHLRKVL--------- 274 (338)
Q Consensus 208 ~l~~~~~~k~~i~~~l~~--~~~~g~LL~GppGtGKT~l~~aia~~l~~~--~~~l~~~~~~~~~~l~~~l--------- 274 (338)
.+++.....+++.+.+.. +....++++|++||||+.+++++....+.. ++.++|+.+..+---..+|
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tg 209 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTG 209 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSS
T ss_pred cccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCC
Confidence 345555555555555544 334578999999999999999999887543 9999999875432222222
Q ss_pred --------HhcCCCcEEEEcCCCccCC
Q 035959 275 --------IATENKSILVVGDIDCCTE 293 (338)
Q Consensus 275 --------~~~~~~~Il~iDeiD~~~~ 293 (338)
.+......||||||+.+..
T Consensus 210 a~~~~~g~~~~a~~gtlfldei~~l~~ 236 (368)
T 3dzd_A 210 ALTRKKGKLELADQGTLFLDEVGELDQ 236 (368)
T ss_dssp CCCCEECHHHHTTTSEEEEETGGGSCH
T ss_pred cccccCChHhhcCCCeEEecChhhCCH
Confidence 1123567899999999964
No 100
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.77 E-value=1.4e-05 Score=70.25 Aligned_cols=64 Identities=16% Similarity=0.149 Sum_probs=41.8
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh--------C-CcEEEEecCCcCC---------------------chHHHHHHH-hcC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL--------H-FDVYDLELSSVEG---------------------NKHLRKVLI-ATE 278 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l--------~-~~~~~l~~~~~~~---------------------~~~l~~~l~-~~~ 278 (338)
-+|++|+||||||+++.+++... | .+++..++.++.. ...+...+. ...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPEN 86 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGGG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcccc
Confidence 46899999999999988865442 4 6666666554321 012222211 112
Q ss_pred CCcEEEEcCCCccCC
Q 035959 279 NKSILVVGDIDCCTE 293 (338)
Q Consensus 279 ~~~Il~iDeiD~~~~ 293 (338)
..+||||||++.+.+
T Consensus 87 ~~~vliIDEAq~l~~ 101 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWP 101 (199)
T ss_dssp TTCEEEETTGGGTSB
T ss_pred CceEEEEEChhhhcc
Confidence 489999999999975
No 101
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.57 E-value=9.7e-05 Score=72.62 Aligned_cols=61 Identities=21% Similarity=0.207 Sum_probs=36.6
Q ss_pred cCCCCCccccccCChhHHHHHHH---HHHhhhcCceeeeCCCCCCcHHHHHHHHHHh---CC-cEEEEecC
Q 035959 199 ILDHPSTFDTLAMDTDMKKMIMD---DLERAWKRGYLLFGPPGTGKSSLIAAMANYL---HF-DVYDLELS 262 (338)
Q Consensus 199 ~~~~p~~f~~l~~~~~~k~~i~~---~l~~~~~~g~LL~GppGtGKT~l~~aia~~l---~~-~~~~l~~~ 262 (338)
+...|.+|+.+ .++.++.+.. .+.. ..+.+++.||||||||+++.+++..+ +. .++.+..+
T Consensus 16 ~~~~p~~~~~L--n~~Q~~av~~~~~~i~~-~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T 83 (459)
T 3upu_A 16 PRGSHMTFDDL--TEGQKNAFNIVMKAIKE-KKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPT 83 (459)
T ss_dssp -----CCSSCC--CHHHHHHHHHHHHHHHS-SSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred cccCCCccccC--CHHHHHHHHHHHHHHhc-CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCc
Confidence 46777888875 4443433332 2222 12378999999999999999999887 33 45555443
No 102
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.56 E-value=6e-05 Score=62.96 Aligned_cols=31 Identities=23% Similarity=0.251 Sum_probs=27.4
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCCcEEEEe
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHFDVYDLE 260 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~~~~~l~ 260 (338)
-++|.||||+|||++++.++..+++.++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4689999999999999999999998876654
No 103
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.53 E-value=4.2e-05 Score=65.12 Aligned_cols=32 Identities=28% Similarity=0.402 Sum_probs=29.1
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcEEEEe
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYDLE 260 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~ 260 (338)
+.++|.||||+|||++++++|..+++++++.+
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 56899999999999999999999999888764
No 104
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.52 E-value=7.4e-05 Score=63.03 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=28.8
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcEEEEec
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYDLEL 261 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~ 261 (338)
.-++|.|+||+|||+++++++..++.+++.++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~ 36 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV 36 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEecc
Confidence 457899999999999999999999988876543
No 105
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.46 E-value=0.0004 Score=81.79 Aligned_cols=68 Identities=24% Similarity=0.391 Sum_probs=50.4
Q ss_pred hhcCceeeeCCCCCCcHHHHHHHHH-HhCCcEEEEecCCcCCchHHHHHHHhc------------------CCCcEEEEc
Q 035959 226 AWKRGYLLFGPPGTGKSSLIAAMAN-YLHFDVYDLELSSVEGNKHLRKVLIAT------------------ENKSILVVG 286 (338)
Q Consensus 226 ~~~~g~LL~GppGtGKT~l~~aia~-~l~~~~~~l~~~~~~~~~~l~~~l~~~------------------~~~~Il~iD 286 (338)
..++.+||+||||||||.++....+ ..+++++.++++.-.+...+...+... .+..|+|||
T Consensus 1302 ~~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFiD 1381 (3245)
T 3vkg_A 1302 SEHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCD 1381 (3245)
T ss_dssp HTTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEET
T ss_pred HCCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccCCCcCCceEEEEec
Confidence 3467899999999999988765444 446778899999888777777666520 123699999
Q ss_pred CCCccCC
Q 035959 287 DIDCCTE 293 (338)
Q Consensus 287 eiD~~~~ 293 (338)
|++.-..
T Consensus 1382 DiNmp~~ 1388 (3245)
T 3vkg_A 1382 EINLPST 1388 (3245)
T ss_dssp TTTCCCC
T ss_pred ccCCCCc
Confidence 9997543
No 106
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.43 E-value=0.00017 Score=61.96 Aligned_cols=25 Identities=28% Similarity=0.571 Sum_probs=22.1
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhCCc
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLHFD 255 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~~~ 255 (338)
+.|.||+|+|||+|++.++..++..
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc
Confidence 6789999999999999999987643
No 107
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.42 E-value=0.00039 Score=81.89 Aligned_cols=67 Identities=18% Similarity=0.177 Sum_probs=58.8
Q ss_pred hcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCCchHHHHHHHhcC-CCcEEEEcCCCccCC
Q 035959 227 WKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKVLIATE-NKSILVVGDIDCCTE 293 (338)
Q Consensus 227 ~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~~~~l~~~l~~~~-~~~Il~iDeiD~~~~ 293 (338)
...|..+.||+|||||.+++++|+.+|..++.++|++-.+...+.++|..+. ..+..++||++.+-.
T Consensus 603 ~~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~~~g~i~~G~~~~GaW~cfDEfNrl~~ 670 (3245)
T 3vkg_A 603 SRMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSRIFVGLCQCGAWGCFDEFNRLEE 670 (3245)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHHHTCEEEEETTTSSCH
T ss_pred hcCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHhhHhhcCcEEEehhhhcCCH
Confidence 3456789999999999999999999999999999999888778888887765 688999999999854
No 108
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.38 E-value=8.5e-05 Score=64.36 Aligned_cols=32 Identities=34% Similarity=0.421 Sum_probs=28.7
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcEEEEe
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYDLE 260 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~ 260 (338)
..++|.||||+|||++++++|..+++.+++.+
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 46889999999999999999999999887654
No 109
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.37 E-value=0.00047 Score=59.82 Aligned_cols=35 Identities=17% Similarity=0.169 Sum_probs=29.3
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSS 263 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~ 263 (338)
.-++|.||||+|||+++..+|...+..++.++...
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 34689999999999999999986677788887665
No 110
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.35 E-value=9.4e-05 Score=62.74 Aligned_cols=32 Identities=28% Similarity=0.436 Sum_probs=28.3
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcEEEEe
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYDLE 260 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~ 260 (338)
+.++|.|+||+|||+++++++..+++.++..+
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d 43 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGLKYINVG 43 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHH
Confidence 46899999999999999999999998877653
No 111
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.34 E-value=9.3e-05 Score=62.54 Aligned_cols=31 Identities=32% Similarity=0.470 Sum_probs=27.8
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCCcEEEEe
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHFDVYDLE 260 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~~~~~l~ 260 (338)
.++|.||||+|||++++++|..+++++++.+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~d 36 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDSD 36 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEccc
Confidence 5789999999999999999999998877653
No 112
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.34 E-value=0.00045 Score=69.47 Aligned_cols=48 Identities=21% Similarity=0.231 Sum_probs=37.3
Q ss_pred CCccccccCChhHHHHHHHHHHh--hhcCceeeeCCCCCCcHHHHHHHHH
Q 035959 203 PSTFDTLAMDTDMKKMIMDDLER--AWKRGYLLFGPPGTGKSSLIAAMAN 250 (338)
Q Consensus 203 p~~f~~l~~~~~~k~~i~~~l~~--~~~~g~LL~GppGtGKT~l~~aia~ 250 (338)
|.....+++.+...+.+.+.+.. ...+-+.++||+|+|||+|+..+++
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 34445688888888888888864 2234578999999999999999874
No 113
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.33 E-value=8.2e-05 Score=64.22 Aligned_cols=63 Identities=10% Similarity=0.116 Sum_probs=38.2
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCC--------cCC----------chHHHHHHHhcC-CCcEEEEcC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSS--------VEG----------NKHLRKVLIATE-NKSILVVGD 287 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~--------~~~----------~~~l~~~l~~~~-~~~Il~iDe 287 (338)
-++++||||+|||+++..++..+ +..++.+.... +.+ ..++..++.... ...+|+|||
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~~~~dvviIDE 84 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIEEDTRGVFIDE 84 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGCCTTEEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHhcCCCCEEEEEC
Confidence 46899999999999986666543 55555442210 000 011222333333 468999999
Q ss_pred CCccC
Q 035959 288 IDCCT 292 (338)
Q Consensus 288 iD~~~ 292 (338)
++.+.
T Consensus 85 ~Q~~~ 89 (184)
T 2orw_A 85 VQFFN 89 (184)
T ss_dssp GGGSC
T ss_pred cccCC
Confidence 99874
No 114
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.30 E-value=0.00012 Score=61.35 Aligned_cols=32 Identities=34% Similarity=0.516 Sum_probs=29.0
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcEEEEe
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYDLE 260 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~ 260 (338)
..++|.|+||+|||++++.+|..+|+++++.+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 46889999999999999999999999988764
No 115
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.30 E-value=0.00011 Score=62.35 Aligned_cols=32 Identities=31% Similarity=0.488 Sum_probs=28.6
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcEEEEe
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYDLE 260 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~ 260 (338)
.-++|.|+||+|||++++.+|..+|+++++.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 34789999999999999999999999887764
No 116
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.29 E-value=0.00049 Score=65.63 Aligned_cols=64 Identities=11% Similarity=0.085 Sum_probs=44.8
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCC---------------------chHHHHHHH---hcCCCcE
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEG---------------------NKHLRKVLI---ATENKSI 282 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~---------------------~~~l~~~l~---~~~~~~I 282 (338)
-++|+||||+|||+|+..+|..+ +..+.+++...... ..++...+. ....+.+
T Consensus 63 i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~dl 142 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVVDL 142 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCCSE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCCCe
Confidence 36899999999999999999875 56777787665321 112222222 1246889
Q ss_pred EEEcCCCccCC
Q 035959 283 LVVGDIDCCTE 293 (338)
Q Consensus 283 l~iDeiD~~~~ 293 (338)
++||.+..+.+
T Consensus 143 vVIDSi~~l~~ 153 (356)
T 3hr8_A 143 IVVDSVAALVP 153 (356)
T ss_dssp EEEECTTTCCC
T ss_pred EEehHhhhhcC
Confidence 99999998875
No 117
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.27 E-value=0.00019 Score=60.11 Aligned_cols=31 Identities=39% Similarity=0.696 Sum_probs=27.0
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcEEEE
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYDL 259 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~~~l 259 (338)
..+.|.||||+|||++++.+|..++..+++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id~ 35 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDS 35 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEec
Confidence 4578999999999999999999999866553
No 118
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.24 E-value=0.00018 Score=65.16 Aligned_cols=32 Identities=25% Similarity=0.433 Sum_probs=28.2
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCCcEEEEec
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHFDVYDLEL 261 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~ 261 (338)
-++|.||||+|||++++++|..++..++..|.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 36899999999999999999999988876644
No 119
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.22 E-value=0.00052 Score=64.30 Aligned_cols=35 Identities=17% Similarity=0.217 Sum_probs=29.1
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh---------CCcEEEEecCC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL---------HFDVYDLELSS 263 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l---------~~~~~~l~~~~ 263 (338)
.-++++||||+|||+++..+|..+ +..+++++...
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 447899999999999999999875 55778887765
No 120
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.22 E-value=0.00078 Score=64.22 Aligned_cols=65 Identities=15% Similarity=0.202 Sum_probs=46.4
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCC---------------------chHHHHHHHh---cCCCc
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEG---------------------NKHLRKVLIA---TENKS 281 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~---------------------~~~l~~~l~~---~~~~~ 281 (338)
+-++++||||+|||+|+..+|..+ +..+.++++....+ ...+..++.. .....
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~~~ 143 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 143 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhccCCC
Confidence 457899999999999999988765 66788888743221 1223333322 24789
Q ss_pred EEEEcCCCccCC
Q 035959 282 ILVVGDIDCCTE 293 (338)
Q Consensus 282 Il~iDeiD~~~~ 293 (338)
+||||.+..+..
T Consensus 144 lVVIDsl~~l~~ 155 (356)
T 1u94_A 144 VIVVDSVAALTP 155 (356)
T ss_dssp EEEEECGGGCCC
T ss_pred EEEEcCHHHhcc
Confidence 999999999875
No 121
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.22 E-value=0.00013 Score=62.46 Aligned_cols=32 Identities=31% Similarity=0.482 Sum_probs=27.8
Q ss_pred CceeeeCCCCCCcHHHHHHHHHH-hCCcEEEEe
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANY-LHFDVYDLE 260 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~-l~~~~~~l~ 260 (338)
..++|.|+||+|||++++.+|.. +|+++++++
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 45889999999999999999999 788777654
No 122
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.21 E-value=0.00039 Score=70.43 Aligned_cols=79 Identities=19% Similarity=0.236 Sum_probs=48.1
Q ss_pred CChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcC----------CchHHHHHHHhc
Q 035959 211 MDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVE----------GNKHLRKVLIAT 277 (338)
Q Consensus 211 ~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~----------~~~~l~~~l~~~ 277 (338)
..+..++.+...+. .+.+++.||||||||+++.+++..+ +..+..+..+... ....+.+++...
T Consensus 190 L~~~Q~~Av~~~~~---~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~ 266 (574)
T 3e1s_A 190 LSEEQASVLDQLAG---HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYG 266 (574)
T ss_dssp CCHHHHHHHHHHTT---CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEE
T ss_pred CCHHHHHHHHHHHh---CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCC
Confidence 45555554443332 3567899999999999999998865 5666655433211 011233333211
Q ss_pred -----------CCCcEEEEcCCCccC
Q 035959 278 -----------ENKSILVVGDIDCCT 292 (338)
Q Consensus 278 -----------~~~~Il~iDeiD~~~ 292 (338)
...++|||||+..+.
T Consensus 267 ~~~~~~~~~~~~~~dvlIIDEasml~ 292 (574)
T 3e1s_A 267 PQGFRHNHLEPAPYDLLIVDEVSMMG 292 (574)
T ss_dssp TTEESCSSSSCCSCSEEEECCGGGCC
T ss_pred cchhhhhhcccccCCEEEEcCccCCC
Confidence 145899999998663
No 123
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.21 E-value=0.00016 Score=60.62 Aligned_cols=32 Identities=19% Similarity=0.405 Sum_probs=28.1
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcEEEEe
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYDLE 260 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~ 260 (338)
.-++|.|+||+|||++++.++..+++++++.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d 34 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTD 34 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEccc
Confidence 35789999999999999999999998877654
No 124
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.21 E-value=0.00013 Score=62.25 Aligned_cols=32 Identities=28% Similarity=0.423 Sum_probs=27.8
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcEEEEe
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYDLE 260 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~ 260 (338)
.-++|.|+||+|||++++.++..+++.++..+
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D 37 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGLRLPLLSKD 37 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEecHH
Confidence 35789999999999999999999998876643
No 125
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.18 E-value=0.00078 Score=63.98 Aligned_cols=65 Identities=11% Similarity=0.138 Sum_probs=44.9
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCC---------------------chHHHHHHH---hcCCCc
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEG---------------------NKHLRKVLI---ATENKS 281 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~---------------------~~~l~~~l~---~~~~~~ 281 (338)
+-++++||||+|||+|+..+|..+ +..+.+++...... ..++..++. ....+.
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~~ 141 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALD 141 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCC
Confidence 347899999999999999988655 56777777654221 112222222 123689
Q ss_pred EEEEcCCCccCC
Q 035959 282 ILVVGDIDCCTE 293 (338)
Q Consensus 282 Il~iDeiD~~~~ 293 (338)
+||||++..+..
T Consensus 142 lIVIDsl~~l~~ 153 (349)
T 2zr9_A 142 IIVIDSVAALVP 153 (349)
T ss_dssp EEEEECGGGCCC
T ss_pred EEEEcChHhhcc
Confidence 999999999874
No 126
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.16 E-value=0.00019 Score=59.59 Aligned_cols=29 Identities=28% Similarity=0.351 Sum_probs=25.6
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCCcEEEE
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHFDVYDL 259 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~~~~~l 259 (338)
-++|.||||+|||++++.+ ..+|++++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4689999999999999999 8889887664
No 127
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.15 E-value=0.00033 Score=62.63 Aligned_cols=60 Identities=18% Similarity=0.214 Sum_probs=42.9
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCC--------------------------chHHHHHHHhcCCC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEG--------------------------NKHLRKVLIATENK 280 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~--------------------------~~~l~~~l~~~~~~ 280 (338)
.+++.|+||+||||++.++|..+ |+++..++...-.. +.++..++. .++
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~--~~p 85 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLK--AAP 85 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHH--HCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHh--cCC
Confidence 47899999999999999988776 77877666643110 123444443 368
Q ss_pred cEEEEcCCCcc
Q 035959 281 SILVVGDIDCC 291 (338)
Q Consensus 281 ~Il~iDeiD~~ 291 (338)
.+++|||+-..
T Consensus 86 dlvIVDElG~~ 96 (228)
T 2r8r_A 86 SLVLVDELAHT 96 (228)
T ss_dssp SEEEESCTTCB
T ss_pred CEEEEeCCCCC
Confidence 99999998865
No 128
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.15 E-value=0.00021 Score=61.78 Aligned_cols=30 Identities=33% Similarity=0.554 Sum_probs=27.3
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCCcEEEE
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHFDVYDL 259 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~~~~~l 259 (338)
-++|.|+||+|||++++.++..++++++.+
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 478999999999999999999999887765
No 129
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.12 E-value=0.00023 Score=59.31 Aligned_cols=30 Identities=27% Similarity=0.443 Sum_probs=27.0
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhCCcEEEEe
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLHFDVYDLE 260 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~~~~~~l~ 260 (338)
++|.|+||+|||++++.++..+++++++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 32 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSLNIPFYDVD 32 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 689999999999999999999998887643
No 130
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.10 E-value=0.00023 Score=60.48 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=27.0
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcEEEE
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYDL 259 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~~~l 259 (338)
.-++|.|+||+|||++++.++..++..++..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 34 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLSA 34 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 4578999999999999999999999877654
No 131
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.10 E-value=0.00027 Score=61.11 Aligned_cols=32 Identities=25% Similarity=0.382 Sum_probs=27.7
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcEEEEe
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYDLE 260 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~ 260 (338)
.-++|.|+||+|||++++.++..+|..++..+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d 50 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGYPFIEGD 50 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTCCEEEGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCEEEeCC
Confidence 45889999999999999999999998776543
No 132
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.10 E-value=0.00081 Score=76.48 Aligned_cols=67 Identities=15% Similarity=0.188 Sum_probs=51.4
Q ss_pred hcCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCCc------------------------hHHHHHHHhcCC
Q 035959 227 WKRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEGN------------------------KHLRKVLIATEN 279 (338)
Q Consensus 227 ~~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~~------------------------~~l~~~l~~~~~ 279 (338)
..+.++++||||||||+|+.+++.+. |..+.++++.+.... ..+...+.+..+
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~~~~ 1159 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGA 1159 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHHhCC
Confidence 44668999999999999999988755 788888888775321 122334445568
Q ss_pred CcEEEEcCCCccCC
Q 035959 280 KSILVVGDIDCCTE 293 (338)
Q Consensus 280 ~~Il~iDeiD~~~~ 293 (338)
+++|+||++..+.+
T Consensus 1160 ~dlvVIDsl~~L~~ 1173 (2050)
T 3cmu_A 1160 VDVIVVDSVAALTP 1173 (2050)
T ss_dssp CSEEEESCGGGCCC
T ss_pred CCEEEECCcccccc
Confidence 99999999999976
No 133
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.09 E-value=0.0002 Score=60.76 Aligned_cols=30 Identities=30% Similarity=0.620 Sum_probs=26.4
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCCcEEEE
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHFDVYDL 259 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~~~~~l 259 (338)
-++|.|+||+|||++++.+|..+++.++..
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 468999999999999999999999876654
No 134
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.09 E-value=0.0002 Score=60.73 Aligned_cols=31 Identities=16% Similarity=0.385 Sum_probs=26.4
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhC-----CcEEEE
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLH-----FDVYDL 259 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~-----~~~~~l 259 (338)
.-++|.||||+|||++++.++..++ ++++.+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~ 39 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSF 39 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEeh
Confidence 3578999999999999999999987 666653
No 135
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.07 E-value=0.00026 Score=61.76 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=26.4
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhCCcEEEE
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLHFDVYDL 259 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~~~~~~l 259 (338)
++|.||||+|||++++.++..++..++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 67899999999999999999999887765
No 136
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.07 E-value=0.0012 Score=62.80 Aligned_cols=82 Identities=26% Similarity=0.428 Sum_probs=48.8
Q ss_pred CCccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHhC----CcEEEEecC-CcC------------
Q 035959 203 PSTFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYLH----FDVYDLELS-SVE------------ 265 (338)
Q Consensus 203 p~~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l~----~~~~~l~~~-~~~------------ 265 (338)
+.+++++...+. +..+......-+++.||+|+|||+++++++..+. ..++.+.-. +..
T Consensus 103 ~~~l~~lg~~~~-----l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~ 177 (356)
T 3jvv_A 103 VLTMEELGMGEV-----FKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQRE 177 (356)
T ss_dssp CCCTTTTTCCHH-----HHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEE
T ss_pred CCCHHHcCChHH-----HHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeee
Confidence 457788877653 2233222223468999999999999999998773 233332111 100
Q ss_pred ---CchHHHHHHHhc--CCCcEEEEcCCC
Q 035959 266 ---GNKHLRKVLIAT--ENKSILVVGDID 289 (338)
Q Consensus 266 ---~~~~l~~~l~~~--~~~~Il~iDeiD 289 (338)
....+...+..+ .+|.+|++||+-
T Consensus 178 ~~~~~~~~~~~La~aL~~~PdvillDEp~ 206 (356)
T 3jvv_A 178 VHRDTLGFSEALRSALREDPDIILVGEMR 206 (356)
T ss_dssp BTTTBSCHHHHHHHHTTSCCSEEEESCCC
T ss_pred eccccCCHHHHHHHHhhhCcCEEecCCCC
Confidence 011233333332 489999999985
No 137
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.05 E-value=0.00025 Score=60.68 Aligned_cols=32 Identities=19% Similarity=0.359 Sum_probs=27.7
Q ss_pred cCceeeeCCCCCCcHHHHHHHHHHhCCcEEEE
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMANYLHFDVYDL 259 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l 259 (338)
+.-+.|.|+||+|||++++.++..++..++..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 34578999999999999999999999877654
No 138
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.04 E-value=0.00026 Score=60.44 Aligned_cols=31 Identities=16% Similarity=0.328 Sum_probs=27.4
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcEEEE
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYDL 259 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~~~l 259 (338)
.-++|.|+||+|||++++.+|..++..++..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 4578999999999999999999999887654
No 139
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.04 E-value=0.00029 Score=61.36 Aligned_cols=29 Identities=21% Similarity=0.376 Sum_probs=26.3
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhCCcEEEE
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLHFDVYDL 259 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~~~~~~l 259 (338)
++|.||||+|||++++.++..++..++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 67899999999999999999999887755
No 140
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.02 E-value=0.0016 Score=58.05 Aligned_cols=62 Identities=8% Similarity=0.224 Sum_probs=40.7
Q ss_pred eeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCC-------cCC-------------chHHHHHHHhc---CCCcEEE
Q 035959 231 YLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSS-------VEG-------------NKHLRKVLIAT---ENKSILV 284 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~-------~~~-------------~~~l~~~l~~~---~~~~Il~ 284 (338)
++++||||+|||+++..++..+ +..++.+.... +.+ ..++...+.+. .++.+|+
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvVi 94 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKVIG 94 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCEEE
Confidence 4789999999999888877665 56676663221 111 12343434332 2478999
Q ss_pred EcCCCccC
Q 035959 285 VGDIDCCT 292 (338)
Q Consensus 285 iDeiD~~~ 292 (338)
|||+..+.
T Consensus 95 IDEaQ~l~ 102 (223)
T 2b8t_A 95 IDEVQFFD 102 (223)
T ss_dssp ECSGGGSC
T ss_pred EecCccCc
Confidence 99999764
No 141
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.02 E-value=0.00053 Score=61.76 Aligned_cols=36 Identities=19% Similarity=0.233 Sum_probs=29.4
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCc
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSV 264 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~ 264 (338)
..++|.||||+|||++++.++..++..++.++...+
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 347899999999999999999999866666665543
No 142
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.01 E-value=0.0015 Score=62.54 Aligned_cols=65 Identities=15% Similarity=0.201 Sum_probs=45.9
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCC---------------------chHHHHHHHh---cCCCc
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEG---------------------NKHLRKVLIA---TENKS 281 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~---------------------~~~l~~~l~~---~~~~~ 281 (338)
+-++|+||||+|||+|+..+|..+ +..+.++++..... ..++...+.. .....
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~~ 154 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGAID 154 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCS
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCCCC
Confidence 447899999999999999888765 56788887764221 1222223322 24689
Q ss_pred EEEEcCCCccCC
Q 035959 282 ILVVGDIDCCTE 293 (338)
Q Consensus 282 Il~iDeiD~~~~ 293 (338)
+||||.+..+..
T Consensus 155 lVVIDsl~~l~~ 166 (366)
T 1xp8_A 155 VVVVDSVAALTP 166 (366)
T ss_dssp EEEEECTTTCCC
T ss_pred EEEEeChHHhcc
Confidence 999999999874
No 143
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.00 E-value=0.00088 Score=61.75 Aligned_cols=33 Identities=33% Similarity=0.471 Sum_probs=26.8
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcEEEEec
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYDLEL 261 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~ 261 (338)
..++|.||||+|||+++++++..++..++.++.
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 347899999999999999999988544556654
No 144
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.99 E-value=0.00033 Score=61.40 Aligned_cols=30 Identities=27% Similarity=0.527 Sum_probs=26.7
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCCcEEEE
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHFDVYDL 259 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~~~~~l 259 (338)
-++|.|+||+|||++++.+|..++..++..
T Consensus 6 ~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 468999999999999999999999877654
No 145
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.99 E-value=0.00035 Score=58.95 Aligned_cols=29 Identities=21% Similarity=0.197 Sum_probs=22.3
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcEE
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVY 257 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~~ 257 (338)
.-++|.|+||+|||++++.++..++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 34789999999999999999999998876
No 146
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.98 E-value=0.00028 Score=59.81 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=27.4
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcEEEE
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYDL 259 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~~~l 259 (338)
.-++|.|+||+|||++++.++..++..++..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 3578999999999999999999999877765
No 147
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.98 E-value=0.00031 Score=58.97 Aligned_cols=29 Identities=28% Similarity=0.329 Sum_probs=23.8
Q ss_pred CceeeeCCCCCCcHHHHHHHHH-HhCCcEE
Q 035959 229 RGYLLFGPPGTGKSSLIAAMAN-YLHFDVY 257 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~-~l~~~~~ 257 (338)
.-++|.||||+|||++++.++. .+++.++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 4578999999999999999998 5665444
No 148
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.97 E-value=0.0004 Score=58.40 Aligned_cols=30 Identities=37% Similarity=0.562 Sum_probs=25.9
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCCcEEEE
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHFDVYDL 259 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~~~~~l 259 (338)
-+.|.||||+|||++++.++..+|..+++.
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~ 39 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQLHAAFLDG 39 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHTCEEEEG
T ss_pred EEEEEcCCCCCHHHHHHHHHHhhCcEEEeC
Confidence 478999999999999999999988766554
No 149
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.95 E-value=0.0016 Score=61.59 Aligned_cols=34 Identities=18% Similarity=0.090 Sum_probs=28.0
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh---------CCcEEEEecCC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL---------HFDVYDLELSS 263 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l---------~~~~~~l~~~~ 263 (338)
-++|+||||+|||+|+..+|... +..+++++...
T Consensus 124 i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 124 ITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp EEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 36899999999999999999873 45677887765
No 150
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.94 E-value=0.0007 Score=57.46 Aligned_cols=31 Identities=23% Similarity=0.268 Sum_probs=27.7
Q ss_pred eeeeCCCCCCcHHHHHHHHHHh---CCcEEEEec
Q 035959 231 YLLFGPPGTGKSSLIAAMANYL---HFDVYDLEL 261 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~ 261 (338)
+.|.|+||+|||++++.+++.+ |++++..+-
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~ 36 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE 36 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 5799999999999999999998 888887753
No 151
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.93 E-value=0.0004 Score=61.65 Aligned_cols=31 Identities=26% Similarity=0.425 Sum_probs=27.4
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcEEEE
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYDL 259 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~~~l 259 (338)
..++|.|+||+|||++++.+|..++..++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 3578999999999999999999999877665
No 152
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.92 E-value=0.0004 Score=59.86 Aligned_cols=32 Identities=19% Similarity=0.327 Sum_probs=27.5
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcEEEEe
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYDLE 260 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~ 260 (338)
.-++|.|+||+|||++++.++..++..++..+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 34789999999999999999999998776643
No 153
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.91 E-value=0.00034 Score=61.70 Aligned_cols=31 Identities=16% Similarity=0.413 Sum_probs=27.3
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcEEEE
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYDL 259 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~~~l 259 (338)
.-++|.|+||+|||++++.+|..++..++..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 4578999999999999999999999877654
No 154
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.89 E-value=0.00037 Score=61.16 Aligned_cols=30 Identities=20% Similarity=0.392 Sum_probs=27.0
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCCcEEEE
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHFDVYDL 259 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~~~~~l 259 (338)
.++|.|+||+|||++++.+|..+++.++..
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 478999999999999999999999887765
No 155
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.87 E-value=0.00039 Score=59.22 Aligned_cols=33 Identities=33% Similarity=0.432 Sum_probs=27.2
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcEEEEec
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYDLEL 261 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~ 261 (338)
.-+.|.||||+|||+++++++..++...+.++.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~ 42 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANLPGVPKVHFHS 42 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCSSSCEEEECT
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCCeEEEcc
Confidence 347899999999999999999987766666654
No 156
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.85 E-value=0.0018 Score=66.23 Aligned_cols=50 Identities=26% Similarity=0.414 Sum_probs=34.2
Q ss_pred cCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEec
Q 035959 210 AMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLEL 261 (338)
Q Consensus 210 ~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~ 261 (338)
..++..++.+...+.. +.-.|++||||||||+++..+..++ +..+..+..
T Consensus 189 ~LN~~Q~~AV~~al~~--~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~ 241 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQ--KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP 241 (646)
T ss_dssp TCCHHHHHHHHHHHHC--SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCHHHHHHHHHHhcC--CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 4577777777766652 1246899999999999877766554 455555443
No 157
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.83 E-value=0.002 Score=72.33 Aligned_cols=66 Identities=15% Similarity=0.180 Sum_probs=49.5
Q ss_pred cCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCC---------------------chHHHHHHHhc---CCC
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEG---------------------NKHLRKVLIAT---ENK 280 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~---------------------~~~l~~~l~~~---~~~ 280 (338)
.+.++|+||||||||+|+.+++... |..+++++...... ...+.+++..+ .++
T Consensus 34 G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~~~~~l~~~~lg~dl~~i~i~~p~t~e~l~~ll~~L~~~~~~ 113 (1706)
T 3cmw_A 34 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAV 113 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEecCccHHHHHHhhccCccceeeeccCcHHHHHHHHHHHHhccCC
Confidence 4568999999999999999988753 67888888876432 22333444333 578
Q ss_pred cEEEEcCCCccCC
Q 035959 281 SILVVGDIDCCTE 293 (338)
Q Consensus 281 ~Il~iDeiD~~~~ 293 (338)
.+||||++..+..
T Consensus 114 ~LVVIDSLt~L~~ 126 (1706)
T 3cmw_A 114 DVIVVDSVAALTP 126 (1706)
T ss_dssp SEEEESCSTTCCC
T ss_pred CEEEEcchhhhcc
Confidence 9999999999976
No 158
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.83 E-value=0.00079 Score=58.18 Aligned_cols=30 Identities=20% Similarity=0.460 Sum_probs=25.6
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcEEE
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYD 258 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~~~ 258 (338)
.-+.|.||+|+|||+++++++..+|..++.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~ 59 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADETGLEFAE 59 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEEc
Confidence 457899999999999999999999865544
No 159
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.83 E-value=0.002 Score=57.54 Aligned_cols=34 Identities=21% Similarity=0.199 Sum_probs=27.6
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELS 262 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~ 262 (338)
+.+++.||+|+|||.++.+++..++..++.+-..
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 3489999999999999999998887766666433
No 160
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.82 E-value=0.001 Score=56.24 Aligned_cols=32 Identities=31% Similarity=0.520 Sum_probs=28.3
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEec
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL---HFDVYDLEL 261 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~ 261 (338)
-+.|.|++|+|||++++.++..+ |++++.++.
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~ 41 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence 36799999999999999999998 888887764
No 161
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.81 E-value=0.0005 Score=60.08 Aligned_cols=29 Identities=17% Similarity=0.268 Sum_probs=26.6
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhCCcEEEE
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLHFDVYDL 259 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~~~~~~l 259 (338)
++|.||||+|||++++.++..+++.++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 68999999999999999999999887765
No 162
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.77 E-value=0.0019 Score=55.54 Aligned_cols=30 Identities=30% Similarity=0.433 Sum_probs=25.3
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCC--cEEEE
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHF--DVYDL 259 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~--~~~~l 259 (338)
-++|.|+||+|||++++.++..++. +++..
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~ 37 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIELKRDVYLT 37 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTTSCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEe
Confidence 4689999999999999999999876 35443
No 163
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.75 E-value=0.00088 Score=57.28 Aligned_cols=28 Identities=29% Similarity=0.694 Sum_probs=24.9
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhCCcEEE
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLHFDVYD 258 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~~~~~~ 258 (338)
+.|.|+||+||||+++.++..++..++.
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 6799999999999999999999986543
No 164
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.75 E-value=0.003 Score=68.32 Aligned_cols=62 Identities=18% Similarity=0.122 Sum_probs=45.5
Q ss_pred CCCccccccCChhHHHHHHHHHHh--hhcCceeeeCCCCCCcHHHHHHHHHHh-------CCcEEEEecCC
Q 035959 202 HPSTFDTLAMDTDMKKMIMDDLER--AWKRGYLLFGPPGTGKSSLIAAMANYL-------HFDVYDLELSS 263 (338)
Q Consensus 202 ~p~~f~~l~~~~~~k~~i~~~l~~--~~~~g~LL~GppGtGKT~l~~aia~~l-------~~~~~~l~~~~ 263 (338)
.|.....+++.+...+++.+.|.. ...+-+.|+|++|+|||+||+.+++.. ...++.++++.
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~ 189 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGK 189 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCS
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECC
Confidence 445556788999888999988854 223446799999999999999988752 22355777655
No 165
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.75 E-value=0.0056 Score=65.89 Aligned_cols=54 Identities=17% Similarity=0.190 Sum_probs=40.1
Q ss_pred cCChhHHHHHHHHHHh-hhcCceeeeCCCCCCcHHHHHHHHHH------hCCcEEEEecCC
Q 035959 210 AMDTDMKKMIMDDLER-AWKRGYLLFGPPGTGKSSLIAAMANY------LHFDVYDLELSS 263 (338)
Q Consensus 210 ~~~~~~k~~i~~~l~~-~~~~g~LL~GppGtGKT~l~~aia~~------l~~~~~~l~~~~ 263 (338)
++.+...+++.+.|.. ...+-+.++||+|.|||+||+.+++. +...++.++++.
T Consensus 131 VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~ 191 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191 (1221)
T ss_dssp CCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCC
T ss_pred CCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCC
Confidence 6777778888888775 22355789999999999999999863 244466666654
No 166
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.75 E-value=0.00039 Score=61.07 Aligned_cols=30 Identities=13% Similarity=0.267 Sum_probs=26.2
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcEEE
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYD 258 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~~~ 258 (338)
.-++|.||||+|||++++.+|..++..++.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 457899999999999999999999976554
No 167
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.75 E-value=0.00073 Score=63.55 Aligned_cols=33 Identities=27% Similarity=0.532 Sum_probs=29.1
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcEEEEec
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYDLEL 261 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~ 261 (338)
..++|.||+|+|||+++.++|..++..++.+|.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 467899999999999999999999988777753
No 168
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.75 E-value=0.00096 Score=58.84 Aligned_cols=29 Identities=24% Similarity=0.453 Sum_probs=25.8
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhCCcEEEE
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLHFDVYDL 259 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~~~~~~l 259 (338)
++|.||||+|||++++.++..++..++..
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 67999999999999999999999876554
No 169
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.74 E-value=0.0012 Score=56.33 Aligned_cols=31 Identities=32% Similarity=0.321 Sum_probs=26.4
Q ss_pred eeeeCCCCCCcHHHHHHHHHHh---CCcEEEEec
Q 035959 231 YLLFGPPGTGKSSLIAAMANYL---HFDVYDLEL 261 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~ 261 (338)
+.|.|++|+||||+++.+++.+ |.+++...-
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 5789999999999999999999 988876644
No 170
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.74 E-value=0.00068 Score=60.78 Aligned_cols=30 Identities=20% Similarity=0.448 Sum_probs=26.6
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCCcEEEE
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHFDVYDL 259 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~~~~~l 259 (338)
-++|.||||+|||++++.++..++..++..
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 478999999999999999999998877655
No 171
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.73 E-value=0.00099 Score=58.27 Aligned_cols=29 Identities=38% Similarity=0.604 Sum_probs=25.2
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCCcEEE
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHFDVYD 258 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~~~~~ 258 (338)
-+.|.||+|+||||+++.++..+|+++++
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 46799999999999999999998876544
No 172
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.72 E-value=0.0017 Score=58.81 Aligned_cols=33 Identities=30% Similarity=0.512 Sum_probs=29.4
Q ss_pred cCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEe
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLE 260 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~ 260 (338)
...+.|.|++|+|||++++.+|..+++++++.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 456899999999999999999999999887754
No 173
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.71 E-value=0.00095 Score=57.30 Aligned_cols=32 Identities=13% Similarity=0.134 Sum_probs=27.8
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh-CCcEEEEec
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL-HFDVYDLEL 261 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l-~~~~~~l~~ 261 (338)
-+.|.|+||+|||++++.++..+ |++++.++.
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 46799999999999999999998 677777654
No 174
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.69 E-value=0.0027 Score=55.36 Aligned_cols=63 Identities=16% Similarity=0.229 Sum_probs=41.9
Q ss_pred ceeeeCCCCCCcH-HHHHHHHHHh--CCcEEEEecC-------CcCC----------chHHHHHHHhcCCCcEEEEcCCC
Q 035959 230 GYLLFGPPGTGKS-SLIAAMANYL--HFDVYDLELS-------SVEG----------NKHLRKVLIATENKSILVVGDID 289 (338)
Q Consensus 230 g~LL~GppGtGKT-~l~~aia~~l--~~~~~~l~~~-------~~~~----------~~~l~~~l~~~~~~~Il~iDeiD 289 (338)
-+++|||.|+||| +|++++.++. +..++.+... .+.+ ...+..++......++|+|||+.
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~~~DvIlIDEaQ 101 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDEGQ 101 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHHTCSEEEESSGG
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhccCCCEEEEEchh
Confidence 4689999999999 8999998866 6677777533 1110 01111222223356899999999
Q ss_pred ccCC
Q 035959 290 CCTE 293 (338)
Q Consensus 290 ~~~~ 293 (338)
-+ +
T Consensus 102 Ff-k 104 (195)
T 1w4r_A 102 FF-P 104 (195)
T ss_dssp GC-T
T ss_pred hh-H
Confidence 98 5
No 175
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=96.68 E-value=0.00079 Score=66.40 Aligned_cols=82 Identities=20% Similarity=0.140 Sum_probs=50.2
Q ss_pred ccCChhHHHHHHHHHHhhh--cC---ceeeeCCCCCCcHHHHHHH-HHHhCCcEEEEecCCcCCchHHH-----------
Q 035959 209 LAMDTDMKKMIMDDLERAW--KR---GYLLFGPPGTGKSSLIAAM-ANYLHFDVYDLELSSVEGNKHLR----------- 271 (338)
Q Consensus 209 l~~~~~~k~~i~~~l~~~~--~~---g~LL~GppGtGKT~l~~ai-a~~l~~~~~~l~~~~~~~~~~l~----------- 271 (338)
+.+.+.+|+.+.-.+.... .+ ++||.|+||| ||.+++++ +..+...++..... .+...|.
T Consensus 215 I~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~--ss~~gLt~s~r~~tG~~~ 291 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRR--TELTDLTAVLKEDRGWAL 291 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGG--CCHHHHSEEEEESSSEEE
T ss_pred cCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCC--CCccCceEEEEcCCCccc
Confidence 5677778877776665311 11 5999999999 99999999 76654433321111 0111110
Q ss_pred -HHHHhcCCCcEEEEcCCCccCC
Q 035959 272 -KVLIATENKSILVVGDIDCCTE 293 (338)
Q Consensus 272 -~~l~~~~~~~Il~iDeiD~~~~ 293 (338)
.=....+...+++||||+.+.+
T Consensus 292 ~~G~l~LAdgGvl~lDEIn~~~~ 314 (506)
T 3f8t_A 292 RAGAAVLADGGILAVDHLEGAPE 314 (506)
T ss_dssp EECHHHHTTTSEEEEECCTTCCH
T ss_pred CCCeeEEcCCCeeehHhhhhCCH
Confidence 0001124579999999999854
No 176
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.68 E-value=0.001 Score=58.99 Aligned_cols=29 Identities=24% Similarity=0.581 Sum_probs=25.5
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcEE
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVY 257 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~~ 257 (338)
+-++|.||||+||++.++.+|..+++..+
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~g~~hI 58 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKFHFNHL 58 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 56789999999999999999999987643
No 177
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.66 E-value=0.00064 Score=57.55 Aligned_cols=31 Identities=26% Similarity=0.397 Sum_probs=25.3
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhC---CcEEEEe
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLH---FDVYDLE 260 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~---~~~~~l~ 260 (338)
-++|.|+||+|||++++.++..++ +.+..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~ 36 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIIN 36 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEE
Confidence 368999999999999999999886 3355554
No 178
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.66 E-value=0.0012 Score=58.02 Aligned_cols=27 Identities=30% Similarity=0.547 Sum_probs=24.2
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhCCcEE
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLHFDVY 257 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~~~~~ 257 (338)
++|.||||+||++.++.+|..+|+..+
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~i 29 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVHI 29 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEE
Confidence 678999999999999999999987654
No 179
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.65 E-value=0.00071 Score=58.33 Aligned_cols=29 Identities=31% Similarity=0.329 Sum_probs=25.2
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhCCcEEEEe
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLHFDVYDLE 260 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~~~~~~l~ 260 (338)
+.|.|++|+|||++++.++. +|.++++.+
T Consensus 4 i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 4 IGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 67999999999999999999 887776543
No 180
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.63 E-value=0.0016 Score=56.22 Aligned_cols=34 Identities=29% Similarity=0.298 Sum_probs=26.8
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELS 262 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~ 262 (338)
.-+.|.||+|+|||++++++|..+ |...+.++..
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d 62 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGD 62 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCc
Confidence 346799999999999999999988 5554455543
No 181
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.62 E-value=0.0015 Score=59.10 Aligned_cols=32 Identities=34% Similarity=0.429 Sum_probs=27.0
Q ss_pred ceeeeCCCCCCcHHHHHHHHHH---hCCcEEEEec
Q 035959 230 GYLLFGPPGTGKSSLIAAMANY---LHFDVYDLEL 261 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~---l~~~~~~l~~ 261 (338)
-++|.|+||+|||++++.++.. .|+.++.++.
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~ 40 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGS 40 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECc
Confidence 4789999999999999999998 6787775543
No 182
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.61 E-value=0.0014 Score=56.21 Aligned_cols=31 Identities=26% Similarity=0.238 Sum_probs=27.3
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCCcEEEEe
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHFDVYDLE 260 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~~~~~l~ 260 (338)
-+.|.|++|+|||++++.+|..+|.++++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 4679999999999999999999998877653
No 183
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.58 E-value=0.0032 Score=55.27 Aligned_cols=35 Identities=20% Similarity=0.191 Sum_probs=27.9
Q ss_pred CceeeeCCCCCCcHHHHHHHHHH--h-------CCcEEEEecCC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANY--L-------HFDVYDLELSS 263 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~--l-------~~~~~~l~~~~ 263 (338)
.-++|+||||+|||+|+..+|.. + +..+++++...
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 34689999999999999999985 3 45677777655
No 184
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.55 E-value=0.00096 Score=57.66 Aligned_cols=29 Identities=24% Similarity=0.303 Sum_probs=25.0
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCCcEEEE
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHFDVYDL 259 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~~~~~l 259 (338)
-+.|.||+|+|||++++.++. +|.++++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id~ 32 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVDA 32 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccch
Confidence 367999999999999999998 88877654
No 185
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.53 E-value=0.0016 Score=58.38 Aligned_cols=31 Identities=35% Similarity=0.354 Sum_probs=26.6
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcEEEE
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYDL 259 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~~~l 259 (338)
.-+.|.||||+|||++++.+|..+++.+++.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d~ 40 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLDT 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 3578999999999999999999999776543
No 186
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.52 E-value=0.0038 Score=61.01 Aligned_cols=64 Identities=16% Similarity=0.263 Sum_probs=44.9
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcC--------------------------Cc-hHHHHHHHhcC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVE--------------------------GN-KHLRKVLIATE 278 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~--------------------------~~-~~l~~~l~~~~ 278 (338)
+.+++.|+||+||||++.++|..+ |..+..+++.... +. .-+.+.+....
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~~ 179 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFK 179 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTTS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHhh
Confidence 357899999999999999999877 4667766654210 00 12345566666
Q ss_pred CCcEEEEcCCCccC
Q 035959 279 NKSILVVGDIDCCT 292 (338)
Q Consensus 279 ~~~Il~iDeiD~~~ 292 (338)
...+++||..-.+.
T Consensus 180 ~~D~vIIDT~G~~~ 193 (432)
T 2v3c_C 180 KADVLIIDTAGRHK 193 (432)
T ss_dssp SCSEEEEECCCSCS
T ss_pred CCCEEEEcCCCCcc
Confidence 77899999876653
No 187
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.51 E-value=0.0015 Score=58.24 Aligned_cols=29 Identities=24% Similarity=0.557 Sum_probs=25.1
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcEE
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVY 257 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~~ 257 (338)
.-+.|.||||+|||+++++++..+|....
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 45789999999999999999999886543
No 188
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.51 E-value=0.0076 Score=60.34 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=33.7
Q ss_pred cCChhHHHHHHHHHHhh---hcCceeeeCCCCCCcHHHHHHHHH
Q 035959 210 AMDTDMKKMIMDDLERA---WKRGYLLFGPPGTGKSSLIAAMAN 250 (338)
Q Consensus 210 ~~~~~~k~~i~~~l~~~---~~~g~LL~GppGtGKT~l~~aia~ 250 (338)
++.+..++++.+.|... ..+-+.++|++|+|||+||..+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 37788888888888654 234567999999999999999997
No 189
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.47 E-value=0.0013 Score=56.99 Aligned_cols=30 Identities=27% Similarity=0.270 Sum_probs=26.7
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCCcEEEE
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHFDVYDL 259 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~~~~~l 259 (338)
-+.|.|++|+|||++++.++..+|+++++.
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid~ 43 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNV 43 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEEC
Confidence 356999999999999999999999888774
No 190
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.46 E-value=0.0064 Score=57.05 Aligned_cols=63 Identities=13% Similarity=0.083 Sum_probs=42.1
Q ss_pred eeeeCCCCCCcHHHHHHHHHHh-----CCcEEEEecCCcCC---------------------chHH-HHHHHh---c--C
Q 035959 231 YLLFGPPGTGKSSLIAAMANYL-----HFDVYDLELSSVEG---------------------NKHL-RKVLIA---T--E 278 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l-----~~~~~~l~~~~~~~---------------------~~~l-~~~l~~---~--~ 278 (338)
++++||||+|||+|+..++..+ +..+.+++...-.. .+++ ..++.. . .
T Consensus 31 teI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~~ 110 (333)
T 3io5_A 31 LILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIERG 110 (333)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhcc
Confidence 5799999999999977666544 56677887654221 1122 122222 2 3
Q ss_pred CCcEEEEcCCCccCC
Q 035959 279 NKSILVVGDIDCCTE 293 (338)
Q Consensus 279 ~~~Il~iDeiD~~~~ 293 (338)
++.+||||-|..+.+
T Consensus 111 ~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 111 EKVVVFIDSLGNLAS 125 (333)
T ss_dssp CCEEEEEECSTTCBC
T ss_pred CceEEEEeccccccc
Confidence 689999999999974
No 191
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.42 E-value=0.0053 Score=56.83 Aligned_cols=59 Identities=17% Similarity=0.246 Sum_probs=41.4
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh----CCcEEEEecCCcCC----------------------chHHHHHHHhcCCCcE
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL----HFDVYDLELSSVEG----------------------NKHLRKVLIATENKSI 282 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l----~~~~~~l~~~~~~~----------------------~~~l~~~l~~~~~~~I 282 (338)
.-++|.||+|+|||+++..+|..+ |..+..++...... ...++..+.....+.+
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~dl 185 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEYDH 185 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGSSE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCCCE
Confidence 457899999999999999999765 55677666543221 1234444555567899
Q ss_pred EEEcC
Q 035959 283 LVVGD 287 (338)
Q Consensus 283 l~iDe 287 (338)
|+||-
T Consensus 186 vIiDT 190 (296)
T 2px0_A 186 VFVDT 190 (296)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99993
No 192
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.42 E-value=0.00069 Score=58.56 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=22.7
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHF 254 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~ 254 (338)
.-+.|.|+||+|||++++.++..++.
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 34689999999999999999998754
No 193
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.41 E-value=0.0045 Score=53.97 Aligned_cols=34 Identities=18% Similarity=0.136 Sum_probs=28.4
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELS 262 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~ 262 (338)
..+++|+++|.||||.|.++|-.+ |+.+..+.+-
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~ 65 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFI 65 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEee
Confidence 356899999999999999998766 7888888554
No 194
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.37 E-value=0.0069 Score=58.55 Aligned_cols=34 Identities=26% Similarity=0.176 Sum_probs=25.7
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh---------CCcEEEEecCC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL---------HFDVYDLELSS 263 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l---------~~~~~~l~~~~ 263 (338)
-++|+||||+|||+|+..+|... +..+++++...
T Consensus 180 i~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 36899999999999999776433 23477777665
No 195
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.36 E-value=0.0023 Score=57.38 Aligned_cols=26 Identities=27% Similarity=0.245 Sum_probs=23.7
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCCc
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHFD 255 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~~ 255 (338)
-+.|.|+||+|||++++.++..++.+
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 46799999999999999999999876
No 196
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.35 E-value=0.0014 Score=56.00 Aligned_cols=30 Identities=30% Similarity=0.478 Sum_probs=26.3
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCCcEEEEe
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHFDVYDLE 260 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~~~~~l~ 260 (338)
-+.|.|++|+|||++++.++.. |+.+++.+
T Consensus 10 ~I~i~G~~GsGKST~~~~La~~-g~~~id~d 39 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRSW-GYPVLDLD 39 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT-TCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-CCEEEccc
Confidence 4679999999999999999998 88877654
No 197
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.31 E-value=0.0026 Score=54.08 Aligned_cols=25 Identities=36% Similarity=0.567 Sum_probs=21.8
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHF 254 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~ 254 (338)
-+.|.||+|+|||++++.++...+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC
Confidence 4679999999999999999987654
No 198
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.30 E-value=0.0059 Score=53.05 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.5
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l 252 (338)
-+.|.||+|+|||+|++.++..+
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36899999999999999999854
No 199
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.28 E-value=0.0027 Score=57.10 Aligned_cols=29 Identities=34% Similarity=0.571 Sum_probs=25.3
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCCcEEE
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHFDVYD 258 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~~~~~ 258 (338)
-+.|.||+|+|||++++.+|..+|+.+++
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 46799999999999999999999876553
No 200
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.28 E-value=0.0036 Score=53.07 Aligned_cols=32 Identities=31% Similarity=0.511 Sum_probs=25.8
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhC---CcEEEEec
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLH---FDVYDLEL 261 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~---~~~~~l~~ 261 (338)
-++|.|+||+|||++++.+|..++ .++..++.
T Consensus 15 ~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 15 VVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 467999999999999999999874 45555543
No 201
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.27 E-value=0.0023 Score=55.70 Aligned_cols=31 Identities=29% Similarity=0.331 Sum_probs=27.4
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcEEEE
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYDL 259 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~~~l 259 (338)
.-+.|.|++|+|||++++.++..+|+++++.
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 3578999999999999999999999887665
No 202
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.26 E-value=0.0017 Score=61.77 Aligned_cols=46 Identities=17% Similarity=0.369 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHHhhh----cCceeeeCCCCCCcHHHHHHHHHHhCCcEEE
Q 035959 213 TDMKKMIMDDLERAW----KRGYLLFGPPGTGKSSLIAAMANYLHFDVYD 258 (338)
Q Consensus 213 ~~~k~~i~~~l~~~~----~~g~LL~GppGtGKT~l~~aia~~l~~~~~~ 258 (338)
..+.+.+++.+...- ...++|.||||+|||++++++|..++++++.
T Consensus 5 ~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp HHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 345566666665421 2348899999999999999999999877633
No 203
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.24 E-value=0.0021 Score=55.99 Aligned_cols=29 Identities=38% Similarity=0.464 Sum_probs=25.4
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCCcEEEE
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHFDVYDL 259 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~~~~~l 259 (338)
-+.|.|++|+|||++++.++. +|+++++.
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 467999999999999999998 88877765
No 204
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.23 E-value=0.0024 Score=55.23 Aligned_cols=25 Identities=28% Similarity=0.533 Sum_probs=22.4
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
+-++|.||||+|||++++.++..++
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4578999999999999999999874
No 205
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.21 E-value=0.0028 Score=61.48 Aligned_cols=29 Identities=24% Similarity=0.272 Sum_probs=24.7
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcEE
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVY 257 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~~ 257 (338)
.-++|.|+||+|||++++.++..+++.++
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~~~~~~i 287 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVSAGYVHV 287 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGGGTCEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhcCcEEE
Confidence 45789999999999999999998876543
No 206
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.18 E-value=0.0011 Score=57.26 Aligned_cols=31 Identities=23% Similarity=0.113 Sum_probs=24.8
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhC---CcEEEE
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLH---FDVYDL 259 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~---~~~~~l 259 (338)
.-+.|.|+||+|||++++.++..++ +++..+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~ 43 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL 43 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 3478999999999999999999864 455433
No 207
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.17 E-value=0.0018 Score=61.16 Aligned_cols=32 Identities=31% Similarity=0.456 Sum_probs=27.0
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCCcEEEEec
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHFDVYDLEL 261 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~ 261 (338)
-++|.||+|+|||+|+..+|..++..++..|-
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds 73 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFPLEVINSDK 73 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSCEEEEECCS
T ss_pred eEEEECCCCCCHHHHHHHHHHHCCCcEEcccc
Confidence 47899999999999999999999876655443
No 208
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.16 E-value=0.005 Score=53.40 Aligned_cols=33 Identities=21% Similarity=0.066 Sum_probs=25.7
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEec
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLEL 261 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~ 261 (338)
..++|.||||+|||+|+..++..+ +..+..++.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 346899999999999999999654 456666554
No 209
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.00 E-value=0.0022 Score=58.75 Aligned_cols=30 Identities=27% Similarity=0.327 Sum_probs=24.4
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh-CCcEEE
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL-HFDVYD 258 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l-~~~~~~ 258 (338)
.-++|.|+||+|||++++.++..+ ++.++.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEec
Confidence 357899999999999999999874 655443
No 210
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.00 E-value=0.0046 Score=54.79 Aligned_cols=30 Identities=27% Similarity=0.422 Sum_probs=26.1
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCCcEEEE
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHFDVYDL 259 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~~~~~l 259 (338)
-+.|.|++|+|||++++.+|..+|+++++.
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~~lg~~~~d~ 47 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAKDFGFTYLDT 47 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceecC
Confidence 467999999999999999999999776653
No 211
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.99 E-value=0.0078 Score=51.61 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=20.4
Q ss_pred cCceeeeCCCCCCcHHHHHHHHHHh
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia~~l 252 (338)
.+.+++.+|+|+|||.++...+...
T Consensus 48 ~~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 48 GKNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCCCCHHHHHHHHHHHH
Confidence 3679999999999999877766543
No 212
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.98 E-value=0.0037 Score=53.02 Aligned_cols=25 Identities=16% Similarity=0.389 Sum_probs=21.8
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
+-+.|.||+|+|||+|+++++..+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3467999999999999999998763
No 213
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.97 E-value=0.0056 Score=52.87 Aligned_cols=25 Identities=36% Similarity=0.585 Sum_probs=22.2
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
|.++|.||+|+|||+|++.+.....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 6789999999999999999987753
No 214
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.96 E-value=0.0057 Score=53.06 Aligned_cols=23 Identities=43% Similarity=0.634 Sum_probs=21.1
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhC
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~ 253 (338)
+.|.||+|+|||||+++++..+.
T Consensus 25 v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 25 VALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEECCTTSCTHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 56999999999999999999885
No 215
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.95 E-value=0.01 Score=51.22 Aligned_cols=46 Identities=13% Similarity=0.181 Sum_probs=31.7
Q ss_pred HHHHHHHHh-hhcCc--eeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecC
Q 035959 217 KMIMDDLER-AWKRG--YLLFGPPGTGKSSLIAAMANYL---HFDVYDLELS 262 (338)
Q Consensus 217 ~~i~~~l~~-~~~~g--~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~ 262 (338)
+.+.+.+.. ..+++ +.|.||+|+|||++++.++..+ +.++..++..
T Consensus 8 ~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 8 DFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp HHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred HHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 344444443 22233 5699999999999999999876 6667666443
No 216
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.94 E-value=0.0061 Score=53.52 Aligned_cols=34 Identities=26% Similarity=0.162 Sum_probs=25.7
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELS 262 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~ 262 (338)
.-+++.||||+|||+++..+|... +..++.++..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 346899999999999988776543 5566666554
No 217
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.94 E-value=0.0033 Score=55.09 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=23.4
Q ss_pred cCceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
.++++|.||+|+|||+|+.+++....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 36899999999999999999998764
No 218
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.94 E-value=0.004 Score=58.17 Aligned_cols=32 Identities=22% Similarity=0.577 Sum_probs=26.9
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcEEEEe
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYDLE 260 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~ 260 (338)
.-+++.||+|+|||+|+..+|..++..++..|
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~~~iis~D 42 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILPVELISVD 42 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEECC
T ss_pred cEEEEECCCccCHHHHHHHHHHhCCCcEEecc
Confidence 45789999999999999999999986665544
No 219
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.93 E-value=0.0036 Score=54.47 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=22.0
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
.-+.|.||+|+|||++++.++..+.
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3467999999999999999998874
No 220
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.92 E-value=0.0057 Score=55.53 Aligned_cols=43 Identities=33% Similarity=0.499 Sum_probs=29.5
Q ss_pred ccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHh
Q 035959 205 TFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 205 ~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l 252 (338)
+++++...+ +++++.-....-+++.||+|+|||+++++++..+
T Consensus 7 ~l~~l~~~~-----vl~~i~i~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 7 EFKKLGLPD-----KVLELCHRKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CGGGSSCCT-----HHHHGGGCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred ChHHCCCHH-----HHHHHhhCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 556665542 3444442222336899999999999999999876
No 221
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.92 E-value=0.0091 Score=58.02 Aligned_cols=49 Identities=27% Similarity=0.381 Sum_probs=35.1
Q ss_pred CCccccccCChhHHHHHHHHHHhhhcCc-eeeeCCCCCCcHHHHHHHHHHhC
Q 035959 203 PSTFDTLAMDTDMKKMIMDDLERAWKRG-YLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 203 p~~f~~l~~~~~~k~~i~~~l~~~~~~g-~LL~GppGtGKT~l~~aia~~l~ 253 (338)
+.+++++.+....+. ++.++.. .+.+ +++.||+|+|||+++++++..+.
T Consensus 143 ~~~l~~Lg~~~~~~~-~L~~l~~-~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHD-NFRRLIK-RPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp CCCGGGSCCCHHHHH-HHHHHHT-SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CCCHHHcCCCHHHHH-HHHHHHH-hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 346777777765444 3444432 3344 68999999999999999999885
No 222
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.88 E-value=0.0042 Score=53.18 Aligned_cols=24 Identities=33% Similarity=0.643 Sum_probs=21.2
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
-+.|.||+|+|||++++.++..+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhhCC
Confidence 467999999999999999998763
No 223
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.85 E-value=0.0037 Score=53.57 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=21.4
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l 252 (338)
.-+.|.||+|+|||++++.++..+
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 346799999999999999999877
No 224
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.85 E-value=0.0042 Score=58.73 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=26.3
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcEEEEe
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYDLE 260 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~ 260 (338)
.-+.+.||+|+|||+++..+|..++..++..|
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~D 39 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGD 39 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccc
Confidence 35789999999999999999999985554443
No 225
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.85 E-value=0.0054 Score=53.28 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=26.5
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhC----CcEEEEec
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLH----FDVYDLEL 261 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~----~~~~~l~~ 261 (338)
.-++|.|+||+|||++++.++..++ .+++.++.
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 3467999999999999999999775 45666653
No 226
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.84 E-value=0.0024 Score=55.18 Aligned_cols=29 Identities=21% Similarity=0.252 Sum_probs=23.7
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh-CCcEEE
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL-HFDVYD 258 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l-~~~~~~ 258 (338)
-+.|.||||+|||++++.++..+ +..++.
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~ 52 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKHLPNCSVIS 52 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSTTEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcEEEe
Confidence 35799999999999999999987 554443
No 227
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.81 E-value=0.0091 Score=58.42 Aligned_cols=35 Identities=26% Similarity=0.433 Sum_probs=28.4
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSS 263 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~ 263 (338)
.-+++.|+||+|||+++..+|.++ |..+..+++..
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~ 138 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDT 138 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCC
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 457899999999999999999877 66776666543
No 228
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.80 E-value=0.0047 Score=53.74 Aligned_cols=29 Identities=14% Similarity=0.150 Sum_probs=26.7
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCCcEEE
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHFDVYD 258 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~~~~~ 258 (338)
-+.|.||+|||||++++.+|..+|+++++
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 46799999999999999999999999875
No 229
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.77 E-value=0.0094 Score=55.34 Aligned_cols=35 Identities=14% Similarity=0.120 Sum_probs=28.0
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh---------------C----CcEEEEecCCc
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL---------------H----FDVYDLELSSV 264 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l---------------~----~~~~~l~~~~~ 264 (338)
-++++||||+|||+++..+|... | ..+++++....
T Consensus 100 i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~ 153 (322)
T 2i1q_A 100 VTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGT 153 (322)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCC
Confidence 46899999999999999998753 2 56778877653
No 230
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.75 E-value=0.0038 Score=57.18 Aligned_cols=29 Identities=31% Similarity=0.283 Sum_probs=25.1
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCCcEEEE
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHFDVYDL 259 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~~~~~l 259 (338)
-+.|.|+||+|||++++.++ .+|++++..
T Consensus 77 iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 46899999999999999999 678877655
No 231
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.73 E-value=0.011 Score=55.83 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=27.2
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhC---------CcEEEEecCC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLH---------FDVYDLELSS 263 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~---------~~~~~l~~~~ 263 (338)
-+.|+||||+|||+|+..+|.... -.+++++...
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 468999999999999999998872 3556776654
No 232
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=95.72 E-value=0.0086 Score=61.07 Aligned_cols=39 Identities=28% Similarity=0.411 Sum_probs=27.4
Q ss_pred CChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHh
Q 035959 211 MDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 211 ~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l 252 (338)
.++..++.+...+. ...+++.||||||||+++..++..+
T Consensus 181 ln~~Q~~av~~~l~---~~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 181 LNHSQVYAVKTVLQ---RPLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp CCHHHHHHHHHHHT---CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhc---CCCeEEECCCCCCHHHHHHHHHHHH
Confidence 45555555544443 3457899999999999888777654
No 233
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.70 E-value=0.0056 Score=52.15 Aligned_cols=25 Identities=36% Similarity=0.585 Sum_probs=21.6
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
+-+.|.||+|+|||++++.++..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4567999999999999999998753
No 234
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.66 E-value=0.0052 Score=57.51 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=25.3
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcEEEE
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYDL 259 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~~~l 259 (338)
.-+++.||+|+|||+|+..+|..++..++..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~ 34 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISG 34 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEEC
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeec
Confidence 3467999999999999999999987554433
No 235
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.64 E-value=0.017 Score=49.94 Aligned_cols=63 Identities=16% Similarity=0.236 Sum_probs=40.2
Q ss_pred eeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCC--------cCC----------chHHHHHHHhcC-CCcEEEEcCC
Q 035959 231 YLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSS--------VEG----------NKHLRKVLIATE-NKSILVVGDI 288 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~--------~~~----------~~~l~~~l~~~~-~~~Il~iDei 288 (338)
++++||+|+|||+.+..++..+ +..++.+...- +.+ ..+...++..+. ...+|+|||+
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~~~~dvViIDEa 90 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFEEDTEVIAIDEV 90 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCCTTCSEEEECSG
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHhccCCEEEEECC
Confidence 5789999999999888877765 66666553110 000 011124454444 4689999999
Q ss_pred CccCC
Q 035959 289 DCCTE 293 (338)
Q Consensus 289 D~~~~ 293 (338)
.-+.+
T Consensus 91 qfl~~ 95 (191)
T 1xx6_A 91 QFFDD 95 (191)
T ss_dssp GGSCT
T ss_pred CCCCH
Confidence 88643
No 236
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.61 E-value=0.0066 Score=52.43 Aligned_cols=24 Identities=38% Similarity=0.596 Sum_probs=21.6
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l 252 (338)
+-+.|.||+|+|||+|++.++..+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 567899999999999999999865
No 237
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.57 E-value=0.013 Score=51.49 Aligned_cols=34 Identities=26% Similarity=0.222 Sum_probs=26.1
Q ss_pred ceeeeCCCCCCcHHHHHHHHHH----hCCcEEEEecCC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANY----LHFDVYDLELSS 263 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~----l~~~~~~l~~~~ 263 (338)
-++++|+||+|||+++..+|.. .+.+++++++..
T Consensus 32 l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~ 69 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccC
Confidence 4689999999999998876643 266777776653
No 238
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.54 E-value=0.019 Score=46.37 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=19.6
Q ss_pred ceeeeCCCCCCcHHHHHHHHHH
Q 035959 230 GYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~ 251 (338)
.+++.|++|+|||+|+.++...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998864
No 239
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.46 E-value=0.0088 Score=51.58 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=21.5
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhC
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~ 253 (338)
+.|.||+|+||||+++.++..++
T Consensus 9 i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 9 IGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56999999999999999999887
No 240
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.39 E-value=0.0085 Score=52.24 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=22.1
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
+-+.|.||+|+|||+|+++++....
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999998764
No 241
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.39 E-value=0.0095 Score=52.85 Aligned_cols=30 Identities=30% Similarity=0.445 Sum_probs=24.8
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhC--CcEEEE
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLH--FDVYDL 259 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~--~~~~~l 259 (338)
-+.|.||||+|||++++.++..++ .+++..
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 357899999999999999999986 465543
No 242
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.38 E-value=0.0097 Score=53.15 Aligned_cols=29 Identities=21% Similarity=0.415 Sum_probs=25.6
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhCCcEEEE
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLHFDVYDL 259 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~~~~~~l 259 (338)
+-|.||||+|||++++.++..++++.+..
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred eeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 55899999999999999999999877654
No 243
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.38 E-value=0.0073 Score=53.13 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=19.0
Q ss_pred CceeeeCCCCCCcHHHHHHHH
Q 035959 229 RGYLLFGPPGTGKSSLIAAMA 249 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia 249 (338)
.-+.|.||+|+|||+|+++++
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 347899999999999999988
No 244
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.32 E-value=0.03 Score=52.15 Aligned_cols=64 Identities=13% Similarity=0.142 Sum_probs=43.4
Q ss_pred hhcCceeeeCCCCCCcHHHHHHHHHHh---CC-cEEEEecCCcCCchHHHHHHHhc------CCCcEEEEcCCCc-cC
Q 035959 226 AWKRGYLLFGPPGTGKSSLIAAMANYL---HF-DVYDLELSSVEGNKHLRKVLIAT------ENKSILVVGDIDC-CT 292 (338)
Q Consensus 226 ~~~~g~LL~GppGtGKT~l~~aia~~l---~~-~~~~l~~~~~~~~~~l~~~l~~~------~~~~Il~iDeiD~-~~ 292 (338)
.....||||||+|+||++.+.++++.+ +. +...+.... +.++++++..+ ..+.|++|||+|. +.
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~ 90 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP---NTDWNAIFSLCQAMSLFASRQTLLLLLPENGPN 90 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT---TCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCC
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC---CCCHHHHHHHhcCcCCccCCeEEEEECCCCCCC
Confidence 345679999999999999999998866 33 222222222 23445554433 3688999999998 64
No 245
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.32 E-value=0.013 Score=50.34 Aligned_cols=33 Identities=24% Similarity=0.241 Sum_probs=28.8
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCc
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSV 264 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~ 264 (338)
+|++|++|+|||+++..+|.. +.+++++.....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQI 34 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCCC
Confidence 589999999999999999988 888888877654
No 246
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.30 E-value=0.011 Score=60.26 Aligned_cols=32 Identities=31% Similarity=0.520 Sum_probs=28.8
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEec
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL---HFDVYDLEL 261 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~ 261 (338)
-++|.|+||+|||+++++++..+ |.+++.++.
T Consensus 54 lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDg 88 (630)
T 1x6v_B 54 TVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 88 (630)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEech
Confidence 36899999999999999999999 999988853
No 247
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.30 E-value=0.033 Score=45.16 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=18.9
Q ss_pred eeeeCCCCCCcHHHHHHHHHH
Q 035959 231 YLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~ 251 (338)
+++.|++|+|||+|+.++...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999763
No 248
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.28 E-value=0.015 Score=54.10 Aligned_cols=35 Identities=29% Similarity=0.455 Sum_probs=27.2
Q ss_pred HHHHHHh--hhcCceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 219 IMDDLER--AWKRGYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 219 i~~~l~~--~~~~g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
+++++.- +....+.|.||+|+|||+|+++|+..+.
T Consensus 115 vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~ 151 (305)
T 2v9p_A 115 ALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLG 151 (305)
T ss_dssp HHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred hhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhcC
Confidence 4555544 3445578999999999999999999873
No 249
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.25 E-value=0.026 Score=56.08 Aligned_cols=33 Identities=18% Similarity=0.334 Sum_probs=27.4
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEec
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLEL 261 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~ 261 (338)
+.+++.|+||+||||++.++|..+ |..+..+++
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 357899999999999999999776 677776665
No 250
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.24 E-value=0.0035 Score=54.10 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=21.2
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhC
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~ 253 (338)
+.|.|++|+|||++++.++..++
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999885
No 251
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.23 E-value=0.041 Score=50.79 Aligned_cols=34 Identities=26% Similarity=0.357 Sum_probs=27.5
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELS 262 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~ 262 (338)
.-+++.|++|+|||+++..+|..+ +..+..+++.
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 346788999999999999999877 6677776664
No 252
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.20 E-value=0.021 Score=46.03 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.7
Q ss_pred ceeeeCCCCCCcHHHHHHHHHH
Q 035959 230 GYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~ 251 (338)
.+++.|++|+|||+|+.+++..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 253
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.20 E-value=0.025 Score=45.73 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.2
Q ss_pred CceeeeCCCCCCcHHHHHHHHHH
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~ 251 (338)
..+++.|++|+|||+|+.++...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999999864
No 254
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=95.20 E-value=0.016 Score=60.86 Aligned_cols=39 Identities=28% Similarity=0.411 Sum_probs=27.4
Q ss_pred CChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHh
Q 035959 211 MDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 211 ~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l 252 (338)
.++..++.+...+. .+-+++.||||||||+++.+++..+
T Consensus 357 Ln~~Q~~Av~~~l~---~~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 357 LNHSQVYAVKTVLQ---RPLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp CCHHHHHHHHHHHT---SSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcc---CCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 45555555554443 2456899999999999888877654
No 255
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.18 E-value=0.0098 Score=56.81 Aligned_cols=46 Identities=30% Similarity=0.478 Sum_probs=30.5
Q ss_pred CCccccccCChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 203 PSTFDTLAMDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 203 p~~f~~l~~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
+.+++++.+.+. +.++.......+++.||+|+|||+++++++..+.
T Consensus 116 ~~~l~~lg~~~~-----l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 116 IPEFKKLGLPDK-----VLELCHRKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp CCCHHHHCCCSS-----HHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cCCHhHcCCCHH-----HHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 345666665432 2222222223478999999999999999998763
No 256
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.16 E-value=0.011 Score=52.19 Aligned_cols=25 Identities=40% Similarity=0.573 Sum_probs=22.0
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
.-+.|.||+|+|||+|+++++....
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 3467999999999999999999765
No 257
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.16 E-value=0.011 Score=49.47 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=21.1
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l 252 (338)
-+.|.||.|+|||+|+++++..+
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 36799999999999999999987
No 258
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.14 E-value=0.011 Score=51.27 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=21.5
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
-+.|.||+|+|||+|+++++..+.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 467999999999999999999874
No 259
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.12 E-value=0.011 Score=51.74 Aligned_cols=24 Identities=33% Similarity=0.628 Sum_probs=21.6
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l 252 (338)
.-+.|.||+|+|||+|++.++...
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 457799999999999999999976
No 260
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.11 E-value=0.0092 Score=50.20 Aligned_cols=18 Identities=33% Similarity=0.569 Sum_probs=16.0
Q ss_pred ceeeeCCCCCCcHHHHHH
Q 035959 230 GYLLFGPPGTGKSSLIAA 247 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~a 247 (338)
-+.|.||+|+|||+|+++
T Consensus 11 i~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 367999999999999993
No 261
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.10 E-value=0.026 Score=45.91 Aligned_cols=21 Identities=38% Similarity=0.626 Sum_probs=19.2
Q ss_pred ceeeeCCCCCCcHHHHHHHHH
Q 035959 230 GYLLFGPPGTGKSSLIAAMAN 250 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~ 250 (338)
.+++.|++|+|||+|+.++..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999999986
No 262
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.06 E-value=0.012 Score=50.74 Aligned_cols=23 Identities=43% Similarity=0.775 Sum_probs=20.9
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l 252 (338)
-+.|.||+|+|||+|++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 36799999999999999999876
No 263
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.04 E-value=0.025 Score=45.85 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.7
Q ss_pred ceeeeCCCCCCcHHHHHHHHHH
Q 035959 230 GYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~ 251 (338)
.+++.|++|+|||+|+.++...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999863
No 264
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.03 E-value=0.033 Score=46.05 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.3
Q ss_pred CceeeeCCCCCCcHHHHHHHHHH
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~ 251 (338)
..+++.|++|+|||+|+.+++..
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 45899999999999999999863
No 265
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.02 E-value=0.018 Score=52.65 Aligned_cols=33 Identities=21% Similarity=0.101 Sum_probs=26.0
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh----CCcEEEEec
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL----HFDVYDLEL 261 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l----~~~~~~l~~ 261 (338)
.-++|.||||+|||+|+..+|..+ |..+..++.
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 346899999999999999998866 446666654
No 266
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.00 E-value=0.012 Score=52.24 Aligned_cols=29 Identities=21% Similarity=0.185 Sum_probs=26.3
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCCcEEE
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHFDVYD 258 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~~~~~ 258 (338)
-+.+.|++|||||++++.+|..+|+++++
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 46799999999999999999999998765
No 267
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.95 E-value=0.0099 Score=57.47 Aligned_cols=31 Identities=26% Similarity=0.379 Sum_probs=25.9
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCcEEEE
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFDVYDL 259 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~~~~l 259 (338)
.-+++.||+|+|||+|+..+|..++..++..
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~ 33 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINS 33 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEEC
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeec
Confidence 3467999999999999999999988655443
No 268
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.84 E-value=0.012 Score=53.39 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=20.7
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l 252 (338)
.-++|+||||+|||+|+..++..+
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 457899999999999999988654
No 269
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.82 E-value=0.026 Score=47.48 Aligned_cols=23 Identities=26% Similarity=0.509 Sum_probs=20.3
Q ss_pred CceeeeCCCCCCcHHHHHHHHHH
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~ 251 (338)
-.+++.|++|+|||+|+.++...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35799999999999999999873
No 270
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=94.82 E-value=0.021 Score=60.02 Aligned_cols=38 Identities=26% Similarity=0.448 Sum_probs=26.1
Q ss_pred CChhHHHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHH
Q 035959 211 MDTDMKKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 211 ~~~~~k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~ 251 (338)
.++..++.+...+. ..-+++.||||||||+++..++..
T Consensus 361 Ln~~Q~~Av~~~l~---~~~~lI~GppGTGKT~~i~~~i~~ 398 (802)
T 2xzl_A 361 LNSSQSNAVSHVLQ---RPLSLIQGPPGTGKTVTSATIVYH 398 (802)
T ss_dssp CCHHHHHHHHHHTT---CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhc---CCCEEEECCCCCCHHHHHHHHHHH
Confidence 45665555554443 234689999999999987776543
No 271
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.80 E-value=0.044 Score=45.71 Aligned_cols=24 Identities=17% Similarity=0.294 Sum_probs=20.4
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l 252 (338)
--+++.|++|+|||+|++.+.+..
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 357899999999999998887654
No 272
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.79 E-value=0.014 Score=49.03 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=21.3
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
-.+|+||.|+|||+++.||+-.++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 347999999999999999998775
No 273
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.77 E-value=0.024 Score=49.57 Aligned_cols=32 Identities=28% Similarity=0.362 Sum_probs=24.3
Q ss_pred HHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHH
Q 035959 218 MIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 218 ~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~ 251 (338)
.+++++. ...-+.|.||+|+|||+|+++++..
T Consensus 14 ~~l~~i~--~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 14 HYVDAID--TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHHHHHH--HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred HHHHhcc--CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4555553 2334679999999999999999975
No 274
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.74 E-value=0.042 Score=46.40 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.1
Q ss_pred CceeeeCCCCCCcHHHHHHHHHH
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~ 251 (338)
.-+++.|++|+|||+|+.++...
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999999864
No 275
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.72 E-value=0.016 Score=51.46 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=22.0
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhCCc
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLHFD 255 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~~~ 255 (338)
+-|.||+|+||||+++.++..+|..
T Consensus 28 igI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 28 IGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhchh
Confidence 5699999999999999999987743
No 276
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.71 E-value=0.037 Score=45.38 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=20.7
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l 252 (338)
..+++.|++|+|||+|+.++...-
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 358999999999999999998643
No 277
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.69 E-value=0.014 Score=53.74 Aligned_cols=35 Identities=14% Similarity=0.235 Sum_probs=23.6
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhC---CcEEEEecCCc
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLH---FDVYDLELSSV 264 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~---~~~~~l~~~~~ 264 (338)
-+.|.||+|+|||++++.++..++ ..+..+++.++
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 357999999999999999999876 44445554443
No 278
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.68 E-value=0.036 Score=55.18 Aligned_cols=34 Identities=12% Similarity=-0.009 Sum_probs=27.4
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCC-----cEEEEecCC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHF-----DVYDLELSS 263 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~-----~~~~l~~~~ 263 (338)
.+.|.|++|+|||++++++|..++. .+..+|...
T Consensus 397 ~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 397 SIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp EEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred EEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 4679999999999999999999985 345565443
No 279
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.67 E-value=0.047 Score=50.62 Aligned_cols=33 Identities=21% Similarity=0.146 Sum_probs=27.1
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELS 262 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~ 262 (338)
-++|.|+||+|||+++..+|... +.++..+++.
T Consensus 70 l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 47899999999999999988665 4577777765
No 280
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.66 E-value=0.029 Score=46.62 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=19.8
Q ss_pred ceeeeCCCCCCcHHHHHHHHHH
Q 035959 230 GYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~ 251 (338)
-+++.|++|+|||+|+.++...
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 281
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.65 E-value=0.026 Score=57.39 Aligned_cols=25 Identities=36% Similarity=0.590 Sum_probs=20.9
Q ss_pred cCceeeeCCCCCCcHHHHHHHHHHh
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia~~l 252 (338)
.+-+++.||||||||+++.++...+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 4568999999999999988877654
No 282
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.62 E-value=0.024 Score=55.27 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=27.2
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELS 262 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~ 262 (338)
+-+++.||+|+|||+++..+|..+ |..+..+++.
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 346899999999999999999877 6666666543
No 283
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.57 E-value=0.014 Score=49.95 Aligned_cols=24 Identities=38% Similarity=0.498 Sum_probs=21.8
Q ss_pred cCceeeeCCCCCCcHHHHHHHHHH
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia~~ 251 (338)
.+|+||.|++|+|||+++.++...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 478999999999999999999874
No 284
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.56 E-value=0.032 Score=48.15 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=22.0
Q ss_pred cCceeeeCCCCCCcHHHHHHHHHHh
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia~~l 252 (338)
..-+++.|++|+|||+|+.+++..+
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3467899999999999999999876
No 285
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.53 E-value=0.022 Score=56.12 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=20.2
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l 252 (338)
-++|+||+|+|||+|+..++...
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhh
Confidence 37899999999999999888764
No 286
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.51 E-value=0.012 Score=51.75 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=14.5
Q ss_pred ceeeeCCCCCCcHHHHHHHH-HHh
Q 035959 230 GYLLFGPPGTGKSSLIAAMA-NYL 252 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia-~~l 252 (338)
-+.|.||+|+|||++++.++ ..+
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EEEEECSCC----CHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 46799999999999999999 765
No 287
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.51 E-value=0.039 Score=46.82 Aligned_cols=32 Identities=16% Similarity=0.241 Sum_probs=24.8
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEe
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLE 260 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~ 260 (338)
.-+.+.|++|+|||+++..++..+ |+.+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 346799999999999999999876 45544443
No 288
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.51 E-value=0.03 Score=46.97 Aligned_cols=23 Identities=26% Similarity=0.563 Sum_probs=20.5
Q ss_pred CceeeeCCCCCCcHHHHHHHHHH
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~ 251 (338)
.-+++.|++|+|||+|+.+++..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35799999999999999999874
No 289
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.50 E-value=0.031 Score=51.92 Aligned_cols=33 Identities=21% Similarity=0.238 Sum_probs=26.4
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELS 262 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~ 262 (338)
-+++.||+|+|||+++..+|..+ +..+..+++.
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D 141 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAAD 141 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred EEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccc
Confidence 46899999999999999999876 5566655543
No 290
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.49 E-value=0.029 Score=56.01 Aligned_cols=32 Identities=19% Similarity=0.379 Sum_probs=25.5
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhC---CcEEEEe
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLH---FDVYDLE 260 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~---~~~~~l~ 260 (338)
.-++|.|.||+|||++++.+|.+++ .+...++
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s 70 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFN 70 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEec
Confidence 4578999999999999999999884 4444443
No 291
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.43 E-value=0.034 Score=48.13 Aligned_cols=36 Identities=22% Similarity=0.292 Sum_probs=25.5
Q ss_pred HHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHh
Q 035959 217 KMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 217 ~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l 252 (338)
+.+...+......-+++.|++|+|||+|+..++...
T Consensus 27 ~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 27 DKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 333333333333457888999999999999999875
No 292
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.37 E-value=0.025 Score=57.12 Aligned_cols=33 Identities=24% Similarity=0.163 Sum_probs=27.9
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhC----CcEEEEecC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLH----FDVYDLELS 262 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~----~~~~~l~~~ 262 (338)
-++|.|+||+|||+++++++..++ .+++.++..
T Consensus 398 ~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D 434 (573)
T 1m8p_A 398 TIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGD 434 (573)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHH
T ss_pred EEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcH
Confidence 367999999999999999999986 677777643
No 293
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.36 E-value=0.056 Score=45.81 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=20.2
Q ss_pred CceeeeCCCCCCcHHHHHHHHHH
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~ 251 (338)
..+++.|++|+|||+|+.++...
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45899999999999999999753
No 294
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.35 E-value=0.054 Score=51.09 Aligned_cols=32 Identities=34% Similarity=0.387 Sum_probs=25.3
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEec
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL---HFDVYDLEL 261 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~ 261 (338)
-+.|.|+||+|||+++.+++..+ |..+..++.
T Consensus 81 ~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~ 115 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAV 115 (355)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEec
Confidence 46799999999999999999876 555544443
No 295
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.30 E-value=0.023 Score=45.84 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=19.7
Q ss_pred ceeeeCCCCCCcHHHHHHHHHH
Q 035959 230 GYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~ 251 (338)
.+++.|++|+|||+|+.+++..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999864
No 296
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.26 E-value=0.023 Score=49.86 Aligned_cols=29 Identities=34% Similarity=0.360 Sum_probs=24.1
Q ss_pred eeeeCCCCCCcHHHHHHHHHHh---CCcEEEE
Q 035959 231 YLLFGPPGTGKSSLIAAMANYL---HFDVYDL 259 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l---~~~~~~l 259 (338)
+.|.|++|+|||++++.++..+ +++++..
T Consensus 9 i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 9 VTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 5688999999999999999988 4566544
No 297
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.20 E-value=0.045 Score=50.36 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=20.9
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhC
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~ 253 (338)
+.+.||+|+|||++++.++..++
T Consensus 34 i~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 34 IFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 46999999999999999999885
No 298
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.17 E-value=0.027 Score=47.87 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=21.0
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l 252 (338)
.-+.+.||+|+|||+++.+++..+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 457899999999999999998865
No 299
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.16 E-value=0.025 Score=45.90 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=19.8
Q ss_pred ceeeeCCCCCCcHHHHHHHHHH
Q 035959 230 GYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~ 251 (338)
.+++.|++|+|||+|+.++...
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 300
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=94.16 E-value=0.097 Score=54.68 Aligned_cols=23 Identities=22% Similarity=0.495 Sum_probs=18.7
Q ss_pred CceeeeCCCCCCcHHHHHHHHHH
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~ 251 (338)
..+++.||+|+|||+++..++..
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999977776543
No 301
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.16 E-value=0.024 Score=48.23 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=19.9
Q ss_pred ceeeeCCCCCCcHHHHHHHHHH
Q 035959 230 GYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~ 251 (338)
-+.|.||+|+|||+|+..++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4689999999999999999975
No 302
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.14 E-value=0.024 Score=48.69 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=21.2
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l 252 (338)
..+++.|++|+|||+|+.+++...
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 458999999999999999999754
No 303
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.14 E-value=0.052 Score=45.53 Aligned_cols=21 Identities=38% Similarity=0.673 Sum_probs=19.4
Q ss_pred ceeeeCCCCCCcHHHHHHHHH
Q 035959 230 GYLLFGPPGTGKSSLIAAMAN 250 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~ 250 (338)
.+++.|++|+|||+|+.++..
T Consensus 10 ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 578999999999999999986
No 304
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.12 E-value=0.023 Score=46.81 Aligned_cols=22 Identities=45% Similarity=0.640 Sum_probs=19.8
Q ss_pred eeeeCCCCCCcHHHHHHHHHHh
Q 035959 231 YLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l 252 (338)
.+++||.|+|||+++.||+-.+
T Consensus 26 ~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4899999999999999998655
No 305
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.11 E-value=0.019 Score=48.28 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=20.5
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l 252 (338)
-.+++.|++|+|||+|+.++...-
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 357999999999999999987643
No 306
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.11 E-value=0.042 Score=48.79 Aligned_cols=30 Identities=20% Similarity=0.194 Sum_probs=21.7
Q ss_pred eeeeCCCCCCcHHHHHHHHHHh-------CCcEEEEe
Q 035959 231 YLLFGPPGTGKSSLIAAMANYL-------HFDVYDLE 260 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l-------~~~~~~l~ 260 (338)
+.|.||+|+|||++++.++..+ |.++....
T Consensus 28 I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 28 ITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp EEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 5688999999999999999987 66665443
No 307
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.10 E-value=0.026 Score=52.26 Aligned_cols=23 Identities=26% Similarity=0.483 Sum_probs=21.0
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l 252 (338)
-+.|.||+|+|||++++.+|..+
T Consensus 102 vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999876
No 308
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.09 E-value=0.027 Score=52.28 Aligned_cols=24 Identities=38% Similarity=0.634 Sum_probs=21.4
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l 252 (338)
.-+.|.||+|+|||++++.+|..+
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH
Confidence 346799999999999999999877
No 309
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.09 E-value=0.026 Score=56.25 Aligned_cols=62 Identities=19% Similarity=0.419 Sum_probs=40.0
Q ss_pred cCceeeeCCCCCCcHHHHHHHHHHhCC--cEEEEecCC-cC-----------------CchHHHHHHHhc--CCCcEEEE
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMANYLHF--DVYDLELSS-VE-----------------GNKHLRKVLIAT--ENKSILVV 285 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia~~l~~--~~~~l~~~~-~~-----------------~~~~l~~~l~~~--~~~~Il~i 285 (338)
+.++++.||+|+|||+++++++..+.. .++.++-.. +. ..-.+..++... ..|+++++
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iiv 339 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIV 339 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEe
Confidence 456899999999999999999998843 344443221 11 011233444332 26888899
Q ss_pred cCCC
Q 035959 286 GDID 289 (338)
Q Consensus 286 DeiD 289 (338)
.|+-
T Consensus 340 gEir 343 (511)
T 2oap_1 340 GEVR 343 (511)
T ss_dssp SCCC
T ss_pred CCcC
Confidence 9874
No 310
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.02 E-value=0.04 Score=46.09 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=19.6
Q ss_pred ceeeeCCCCCCcHHHHHHHHHH
Q 035959 230 GYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~ 251 (338)
-+++.|++|+|||+|+.+++..
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998854
No 311
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.00 E-value=0.045 Score=51.09 Aligned_cols=33 Identities=36% Similarity=0.566 Sum_probs=26.5
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEec
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLEL 261 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~ 261 (338)
+-+++.||+|+|||+++..+|..+ +..+..+++
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 357899999999999999999876 556666554
No 312
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=93.99 E-value=0.027 Score=55.07 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=18.6
Q ss_pred ceeeeCCCCCCcHHHHHHHHHH
Q 035959 230 GYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~ 251 (338)
-.++.|+||||||+++..+++.
T Consensus 163 v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp EEEEEECTTSCHHHHHHHHCCT
T ss_pred EEEEEcCCCCCHHHHHHHHhcc
Confidence 3579999999999999887753
No 313
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.97 E-value=0.029 Score=45.53 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=19.6
Q ss_pred ceeeeCCCCCCcHHHHHHHHHH
Q 035959 230 GYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~ 251 (338)
.+++.|++|+|||+|+.++...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998864
No 314
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.97 E-value=0.024 Score=48.09 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=20.3
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l 252 (338)
-+.|.||+|+|||+|+..++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 46899999999999999999754
No 315
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.88 E-value=0.047 Score=54.11 Aligned_cols=30 Identities=27% Similarity=0.319 Sum_probs=24.0
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh---CCcEEEE
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL---HFDVYDL 259 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l---~~~~~~l 259 (338)
-+.|.||+|+|||+|++.||..+ +..+...
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 36799999999999999999876 3445443
No 316
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.87 E-value=0.032 Score=45.39 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=20.2
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l 252 (338)
.+++.|++|+|||+|+.++...-
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
No 317
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.85 E-value=0.032 Score=52.34 Aligned_cols=64 Identities=16% Similarity=0.363 Sum_probs=40.9
Q ss_pred hcCceeeeCCCCCCcHHHHHHHHHHhCC--cEEEEecCCc------C--------CchHHHHHHHhc--CCCcEEEEcCC
Q 035959 227 WKRGYLLFGPPGTGKSSLIAAMANYLHF--DVYDLELSSV------E--------GNKHLRKVLIAT--ENKSILVVGDI 288 (338)
Q Consensus 227 ~~~g~LL~GppGtGKT~l~~aia~~l~~--~~~~l~~~~~------~--------~~~~l~~~l~~~--~~~~Il~iDei 288 (338)
....+++.||+|+|||+|+++++..+.. ..+.++.... . .....+..+..+ .+|.+|++||.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~ 249 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGEL 249 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCC
Confidence 3456889999999999999999998742 2333432211 0 011223333322 47999999998
Q ss_pred Cc
Q 035959 289 DC 290 (338)
Q Consensus 289 D~ 290 (338)
-.
T Consensus 250 ~~ 251 (330)
T 2pt7_A 250 RS 251 (330)
T ss_dssp CS
T ss_pred Ch
Confidence 75
No 318
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.84 E-value=0.064 Score=47.23 Aligned_cols=63 Identities=6% Similarity=0.126 Sum_probs=38.0
Q ss_pred eeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcC--CchHH----------------HHHHHhcC-CCcEEEEcCC
Q 035959 231 YLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVE--GNKHL----------------RKVLIATE-NKSILVVGDI 288 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~--~~~~l----------------~~~l~~~~-~~~Il~iDei 288 (338)
++++||.|+|||+.+.-++..+ +..++.+...--. .+..+ ..++.... ...+|+|||+
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~~~~~~~~~~~~~dvViIDEa 110 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSASKDIFKHITEEMDVIAIDEV 110 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------CCEEECSSGGGGGGGCCSSCCEEEECCG
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHHHHHhhcCCeeEEeecCCHHHHHHHHhcCCCEEEEECc
Confidence 3589999999999877776554 6777766533111 00011 12222222 3689999999
Q ss_pred CccCC
Q 035959 289 DCCTE 293 (338)
Q Consensus 289 D~~~~ 293 (338)
.-+.+
T Consensus 111 QF~~~ 115 (214)
T 2j9r_A 111 QFFDG 115 (214)
T ss_dssp GGSCT
T ss_pred ccCCH
Confidence 98743
No 319
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.83 E-value=0.032 Score=51.97 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=20.6
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhC
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~ 253 (338)
+.|.||+|+|||||++.|+..+.
T Consensus 93 vgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 93 IGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCchHHHHHHHHHhhcc
Confidence 46999999999999999999773
No 320
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.82 E-value=0.032 Score=45.83 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=19.7
Q ss_pred ceeeeCCCCCCcHHHHHHHHHH
Q 035959 230 GYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~ 251 (338)
.+++.|++|+|||+|+.++...
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999853
No 321
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.82 E-value=0.033 Score=45.33 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.8
Q ss_pred ceeeeCCCCCCcHHHHHHHHHH
Q 035959 230 GYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~ 251 (338)
-+++.|++|+|||+|+.++...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 322
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.82 E-value=0.054 Score=52.88 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=26.8
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh----CCcEEEEecC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL----HFDVYDLELS 262 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l----~~~~~~l~~~ 262 (338)
-+++.|+||+|||+|+..+|..+ |.++..+++.
T Consensus 205 liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 205 LIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 36899999999999999988754 5578877654
No 323
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.81 E-value=0.031 Score=45.79 Aligned_cols=21 Identities=43% Similarity=0.743 Sum_probs=19.0
Q ss_pred ceeeeCCCCCCcHHHHHHHHH
Q 035959 230 GYLLFGPPGTGKSSLIAAMAN 250 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~ 250 (338)
-+++.|+||+|||+|+.++..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCccHHHHHHHHhc
Confidence 478999999999999999875
No 324
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=93.80 E-value=0.028 Score=49.38 Aligned_cols=31 Identities=26% Similarity=0.314 Sum_probs=27.0
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCCcEEEEec
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHFDVYDLEL 261 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~ 261 (338)
.+-|+|..|||||++++.++. +|+++++.|.
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD~ 41 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTDL 41 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEECcH
Confidence 356999999999999999998 9999887765
No 325
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.80 E-value=0.03 Score=46.03 Aligned_cols=21 Identities=33% Similarity=0.623 Sum_probs=19.2
Q ss_pred ceeeeCCCCCCcHHHHHHHHH
Q 035959 230 GYLLFGPPGTGKSSLIAAMAN 250 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~ 250 (338)
-+.|.|+||+|||+|+.+++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 468999999999999999986
No 326
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.80 E-value=0.032 Score=52.39 Aligned_cols=30 Identities=37% Similarity=0.544 Sum_probs=24.0
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh---CCcEEEE
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL---HFDVYDL 259 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l---~~~~~~l 259 (338)
-+.|.||+|+||||+++.+|..+ +..+...
T Consensus 131 vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~ 163 (328)
T 3e70_C 131 VIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIA 163 (328)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEE
Confidence 46799999999999999999877 3444444
No 327
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.79 E-value=0.029 Score=50.14 Aligned_cols=24 Identities=33% Similarity=0.645 Sum_probs=21.2
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
-+.|.||+|+|||+|+++++..+.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999998764
No 328
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.77 E-value=0.045 Score=50.59 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=21.0
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhC
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~ 253 (338)
+-|.||+|+|||++++.++..++
T Consensus 83 igI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 83 ISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 46999999999999999999876
No 329
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.75 E-value=0.018 Score=56.52 Aligned_cols=25 Identities=24% Similarity=0.506 Sum_probs=22.5
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
.-++|.|.||+|||++++.++..++
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4578999999999999999999875
No 330
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.74 E-value=0.06 Score=47.74 Aligned_cols=33 Identities=27% Similarity=0.573 Sum_probs=26.8
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh--CCcEEEEecC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL--HFDVYDLELS 262 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l--~~~~~~l~~~ 262 (338)
.+++.|.+|+|||+++..+|..+ |..+..+++.
T Consensus 16 i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D 50 (262)
T 1yrb_A 16 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLD 50 (262)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 35789999999999999999776 6677666644
No 331
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.70 E-value=0.035 Score=45.68 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=20.1
Q ss_pred CceeeeCCCCCCcHHHHHHHHHH
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~ 251 (338)
..+++.|++|+|||+|+.++...
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999998864
No 332
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.69 E-value=0.035 Score=45.03 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=19.4
Q ss_pred ceeeeCCCCCCcHHHHHHHHH
Q 035959 230 GYLLFGPPGTGKSSLIAAMAN 250 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~ 250 (338)
.+++.|++|+|||+|+.++..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999999986
No 333
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.66 E-value=0.064 Score=50.34 Aligned_cols=35 Identities=31% Similarity=0.437 Sum_probs=25.5
Q ss_pred HHHHHHHhhhcCc--eeeeCCCCCCcHHHHHHHHHHh
Q 035959 218 MIMDDLERAWKRG--YLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 218 ~i~~~l~~~~~~g--~LL~GppGtGKT~l~~aia~~l 252 (338)
.+++++.-.-+.| +.|.||||+|||+|+.+++..+
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 3455554322333 5699999999999999999766
No 334
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.66 E-value=0.03 Score=45.58 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=19.5
Q ss_pred ceeeeCCCCCCcHHHHHHHHHH
Q 035959 230 GYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~ 251 (338)
.+++.|++|+|||+|+.++...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5789999999999999999853
No 335
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=93.64 E-value=0.052 Score=45.77 Aligned_cols=21 Identities=29% Similarity=0.651 Sum_probs=18.9
Q ss_pred ceeeeCCCCCCcHHHHHHHHH
Q 035959 230 GYLLFGPPGTGKSSLIAAMAN 250 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~ 250 (338)
.+++.|++|+|||+|+.++..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 479999999999999999874
No 336
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.63 E-value=0.027 Score=50.17 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=21.8
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
.-+.|.||.|+|||||+++++....
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3467999999999999999998764
No 337
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.63 E-value=0.061 Score=50.81 Aligned_cols=39 Identities=28% Similarity=0.396 Sum_probs=29.7
Q ss_pred HHHHHHHhhhcCc--eeeeCCCCCCcHHHHHHHHHHhCCcEE
Q 035959 218 MIMDDLERAWKRG--YLLFGPPGTGKSSLIAAMANYLHFDVY 257 (338)
Q Consensus 218 ~i~~~l~~~~~~g--~LL~GppGtGKT~l~~aia~~l~~~~~ 257 (338)
.+++.+ -+-.+| +.|.||+|+|||+|++.|++....+..
T Consensus 60 ~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g 100 (347)
T 2obl_A 60 RAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADII 100 (347)
T ss_dssp HHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEE
T ss_pred EEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEE
Confidence 356666 444444 679999999999999999999876543
No 338
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.63 E-value=0.036 Score=52.60 Aligned_cols=27 Identities=26% Similarity=0.493 Sum_probs=23.3
Q ss_pred hcCceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 227 WKRGYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 227 ~~~g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
....++|.||+|+|||+|+++++..+.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 345678999999999999999999874
No 339
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.63 E-value=0.015 Score=52.18 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=21.6
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
-+.|.|++|+|||++++.++..++
T Consensus 26 ~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 26 KISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp EEEEECSTTSSHHHHHTTTGGGCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 357899999999999999999983
No 340
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.63 E-value=0.037 Score=48.87 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=21.9
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
-+.+.|++|+|||++++.++..++
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 467999999999999999999984
No 341
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.59 E-value=0.024 Score=50.07 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=21.1
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
-+.|.||+|+|||+|+++++..+.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 467999999999999999998764
No 342
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.59 E-value=0.03 Score=50.97 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=20.7
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l 252 (338)
.+.|.||+|+|||||+++++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46789999999999999999876
No 343
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.56 E-value=0.029 Score=47.06 Aligned_cols=21 Identities=24% Similarity=0.645 Sum_probs=19.0
Q ss_pred ceeeeCCCCCCcHHHHHHHHH
Q 035959 230 GYLLFGPPGTGKSSLIAAMAN 250 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~ 250 (338)
-++|.|++|+|||+|+..++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999886
No 344
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.56 E-value=0.031 Score=52.83 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=23.3
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCCc
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHFD 255 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~~ 255 (338)
.-+.|.||+|+|||+|++.|+..+..+
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 457899999999999999999987543
No 345
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.53 E-value=0.028 Score=50.05 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=21.3
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l 252 (338)
.-+.|.||+|+|||+|+++++..+
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 346799999999999999999876
No 346
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.51 E-value=0.038 Score=45.90 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.2
Q ss_pred CceeeeCCCCCCcHHHHHHHHHH
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~ 251 (338)
-.+++.|++|+|||+|+.++...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35799999999999999999863
No 347
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.49 E-value=0.037 Score=45.08 Aligned_cols=19 Identities=37% Similarity=0.681 Sum_probs=17.7
Q ss_pred eeeeCCCCCCcHHHHHHHH
Q 035959 231 YLLFGPPGTGKSSLIAAMA 249 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia 249 (338)
+++.|+||+|||+|+.++.
T Consensus 5 i~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999986
No 348
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.46 E-value=0.057 Score=52.55 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=26.5
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh----CCcEEEEecC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL----HFDVYDLELS 262 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l----~~~~~~l~~~ 262 (338)
-+++.|+||+|||+++..+|... |.++..+++.
T Consensus 202 l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 202 LNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 36899999999999999888654 5678777664
No 349
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.46 E-value=0.04 Score=44.87 Aligned_cols=21 Identities=24% Similarity=0.539 Sum_probs=19.3
Q ss_pred ceeeeCCCCCCcHHHHHHHHH
Q 035959 230 GYLLFGPPGTGKSSLIAAMAN 250 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~ 250 (338)
.+++.|++|+|||+|+.++..
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999999976
No 350
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.46 E-value=0.031 Score=49.18 Aligned_cols=25 Identities=32% Similarity=0.672 Sum_probs=21.7
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
.-+.|.||.|+|||+|+++++..+.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3467999999999999999998764
No 351
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.45 E-value=0.04 Score=46.00 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=20.1
Q ss_pred ceeeeCCCCCCcHHHHHHHHHH
Q 035959 230 GYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~ 251 (338)
-+++.|++|+|||+|+.++...
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999875
No 352
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.42 E-value=0.036 Score=45.60 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=19.0
Q ss_pred ceeeeCCCCCCcHHHHHHHHH
Q 035959 230 GYLLFGPPGTGKSSLIAAMAN 250 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~ 250 (338)
-+++.|++|+|||+|+.++..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 478999999999999999874
No 353
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.41 E-value=0.041 Score=52.34 Aligned_cols=23 Identities=26% Similarity=0.483 Sum_probs=21.0
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l 252 (338)
-+.|.||+|+||||+++.+|..+
T Consensus 159 vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHhhc
Confidence 36799999999999999999976
No 354
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.40 E-value=0.042 Score=51.40 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=21.0
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhC
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~ 253 (338)
+-|.||+|+|||++++.++..++
T Consensus 95 igI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 56999999999999999999875
No 355
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.38 E-value=0.057 Score=50.91 Aligned_cols=33 Identities=24% Similarity=0.216 Sum_probs=27.2
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELS 262 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~ 262 (338)
-++|.|+||+|||+++..+|..+ +.++..+++.
T Consensus 48 LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE 83 (338)
T 4a1f_A 48 LVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE 83 (338)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 37899999999999999988764 6777777664
No 356
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.36 E-value=0.056 Score=47.60 Aligned_cols=30 Identities=23% Similarity=0.143 Sum_probs=25.1
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCCcEEEE
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHFDVYDL 259 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~~~~~l 259 (338)
-+.+.|++|+|||++++.++..++.++..+
T Consensus 7 ~i~~eG~~g~GKst~~~~l~~~l~~~~~~~ 36 (216)
T 3tmk_A 7 LILIEGLDRTGKTTQCNILYKKLQPNCKLL 36 (216)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHCSSEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccceEE
Confidence 357899999999999999999998754433
No 357
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.32 E-value=0.038 Score=49.57 Aligned_cols=22 Identities=41% Similarity=0.516 Sum_probs=20.1
Q ss_pred ceeeeCCCCCCcHHHHHHHHHH
Q 035959 230 GYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~ 251 (338)
-+.|.||+|+|||||+++++..
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999999986
No 358
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.32 E-value=0.085 Score=44.89 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=19.9
Q ss_pred CceeeeCCCCCCcHHHHHHHHHH
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~ 251 (338)
--+++.|++|+|||+|+..+...
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhhC
Confidence 35789999999999999998753
No 359
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.31 E-value=0.033 Score=50.46 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=21.3
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
-+.|.||+|+|||||+++++..+.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 467999999999999999998764
No 360
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.28 E-value=0.041 Score=45.82 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=19.9
Q ss_pred ceeeeCCCCCCcHHHHHHHHHH
Q 035959 230 GYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~ 251 (338)
-+.|.|++|+|||+|+.+++..
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999873
No 361
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.26 E-value=0.047 Score=45.01 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=20.1
Q ss_pred CceeeeCCCCCCcHHHHHHHHHH
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~ 251 (338)
.-+++.|++|+|||+|+.++...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35799999999999999999864
No 362
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.26 E-value=0.037 Score=45.37 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=19.6
Q ss_pred ceeeeCCCCCCcHHHHHHHHHH
Q 035959 230 GYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~ 251 (338)
-+++.|++|+|||+|+.++...
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999853
No 363
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.24 E-value=0.04 Score=49.98 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=20.9
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l 252 (338)
.-+.|.||.|+|||||+++++...
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTCT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 346799999999999999999863
No 364
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.24 E-value=0.033 Score=50.17 Aligned_cols=24 Identities=42% Similarity=0.812 Sum_probs=21.3
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
-+.|.||.|+|||||+++++..+.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999998764
No 365
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.24 E-value=0.034 Score=49.63 Aligned_cols=23 Identities=26% Similarity=0.563 Sum_probs=20.8
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l 252 (338)
-+.|.||+|+|||||+++++..+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46799999999999999999876
No 366
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.23 E-value=0.079 Score=51.67 Aligned_cols=38 Identities=39% Similarity=0.542 Sum_probs=29.6
Q ss_pred HHHHHHHhhhcCc--eeeeCCCCCCcHHHHHHHHHHhCCcE
Q 035959 218 MIMDDLERAWKRG--YLLFGPPGTGKSSLIAAMANYLHFDV 256 (338)
Q Consensus 218 ~i~~~l~~~~~~g--~LL~GppGtGKT~l~~aia~~l~~~~ 256 (338)
.+++.+ -+-.+| +.|.||+|+|||+|++.|++....+.
T Consensus 146 ~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~ 185 (438)
T 2dpy_A 146 RAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADV 185 (438)
T ss_dssp HHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSE
T ss_pred eEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCe
Confidence 466666 544444 67999999999999999999986543
No 367
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.17 E-value=0.036 Score=49.07 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=21.8
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
.-+.|.||.|+|||+|+++++..+.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3467999999999999999998763
No 368
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.13 E-value=0.036 Score=49.44 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.3
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
-+.|.||.|+|||||+++++..+.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999998764
No 369
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.11 E-value=0.036 Score=45.02 Aligned_cols=21 Identities=43% Similarity=0.735 Sum_probs=18.5
Q ss_pred ceeeeCCCCCCcHHHHHHHHH
Q 035959 230 GYLLFGPPGTGKSSLIAAMAN 250 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~ 250 (338)
-+++.|+||+|||+|+.++.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 378999999999999999863
No 370
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=93.11 E-value=0.11 Score=52.02 Aligned_cols=33 Identities=30% Similarity=0.320 Sum_probs=26.5
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhC---CcEEEEecC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLH---FDVYDLELS 262 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~---~~~~~l~~~ 262 (338)
-++|.|+||+|||+++++++..++ .+++.++..
T Consensus 374 ~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D 409 (546)
T 2gks_A 374 CVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGD 409 (546)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHH
T ss_pred EEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECch
Confidence 367999999999999999999874 456666543
No 371
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.09 E-value=0.049 Score=45.52 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.9
Q ss_pred ceeeeCCCCCCcHHHHHHHHHH
Q 035959 230 GYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~ 251 (338)
.+++.|++|+|||+|+.+++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5789999999999999999864
No 372
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.09 E-value=0.076 Score=51.70 Aligned_cols=35 Identities=20% Similarity=0.349 Sum_probs=29.1
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh----CCcEEEEecCC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL----HFDVYDLELSS 263 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l----~~~~~~l~~~~ 263 (338)
+.+++.|++|+|||+++..+|..+ |..+..+++..
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 467888999999999999999776 67788777764
No 373
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.07 E-value=0.047 Score=54.86 Aligned_cols=32 Identities=34% Similarity=0.322 Sum_probs=26.0
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhC----CcEEEEecC
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLH----FDVYDLELS 262 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~----~~~~~l~~~ 262 (338)
+.|.|++|+|||++++++|..++ ..+..++..
T Consensus 372 I~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD 407 (552)
T 3cr8_A 372 VFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGD 407 (552)
T ss_dssp EEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSH
T ss_pred EEEECCCCChHHHHHHHHHHhhcccCCceEEEECCc
Confidence 67999999999999999999985 345556543
No 374
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.05 E-value=0.048 Score=44.79 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.7
Q ss_pred CceeeeCCCCCCcHHHHHHHHH
Q 035959 229 RGYLLFGPPGTGKSSLIAAMAN 250 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~ 250 (338)
.-+++.|++|+|||+|+.++..
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4578999999999999999975
No 375
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.04 E-value=0.037 Score=49.60 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=21.8
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
.-+.|.||+|+|||+|+++++..+.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3467999999999999999998764
No 376
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.03 E-value=0.043 Score=45.07 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.4
Q ss_pred CceeeeCCCCCCcHHHHHHHHHH
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~ 251 (338)
..+++.|++|+|||+|+.++...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999999875
No 377
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.03 E-value=0.038 Score=50.13 Aligned_cols=25 Identities=24% Similarity=0.515 Sum_probs=21.7
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
.-+.|.||.|+|||+|+++++..+.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 3467999999999999999998764
No 378
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.03 E-value=0.047 Score=44.84 Aligned_cols=21 Identities=43% Similarity=0.714 Sum_probs=18.9
Q ss_pred ceeeeCCCCCCcHHHHHHHHH
Q 035959 230 GYLLFGPPGTGKSSLIAAMAN 250 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~ 250 (338)
.+++.|++|+|||+|+.++..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999999864
No 379
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.03 E-value=0.038 Score=49.67 Aligned_cols=24 Identities=46% Similarity=0.635 Sum_probs=21.3
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
-+.|.||.|+|||+|+++++..+.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 467999999999999999998764
No 380
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.01 E-value=0.038 Score=50.47 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.2
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
-+.|.||+|+|||||+++++..+.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 467999999999999999998763
No 381
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.96 E-value=0.053 Score=44.62 Aligned_cols=22 Identities=27% Similarity=0.527 Sum_probs=19.7
Q ss_pred ceeeeCCCCCCcHHHHHHHHHH
Q 035959 230 GYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~ 251 (338)
.+++.|++|+|||+|+.++...
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5789999999999999998863
No 382
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.94 E-value=0.044 Score=45.48 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=20.1
Q ss_pred CceeeeCCCCCCcHHHHHHHHHH
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~ 251 (338)
--+++.|++|+|||+|+.++...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999999864
No 383
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.93 E-value=0.054 Score=44.88 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.9
Q ss_pred ceeeeCCCCCCcHHHHHHHHHH
Q 035959 230 GYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~ 251 (338)
-+++.|++|+|||+|+.++...
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999999864
No 384
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.92 E-value=0.053 Score=45.38 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.3
Q ss_pred CceeeeCCCCCCcHHHHHHHHHH
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~ 251 (338)
..+++.|++|+|||+|+.++...
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35799999999999999999864
No 385
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.90 E-value=0.054 Score=44.74 Aligned_cols=22 Identities=18% Similarity=0.379 Sum_probs=19.5
Q ss_pred ceeeeCCCCCCcHHHHHHHHHH
Q 035959 230 GYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~ 251 (338)
.+++.|++|+|||+|+.++...
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998853
No 386
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.89 E-value=0.041 Score=49.68 Aligned_cols=24 Identities=25% Similarity=0.585 Sum_probs=21.2
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
-+.|.||.|+|||||+++++..+.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 467999999999999999998763
No 387
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.87 E-value=0.046 Score=45.67 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.8
Q ss_pred ceeeeCCCCCCcHHHHHHHHHH
Q 035959 230 GYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~ 251 (338)
-+++.|++|+|||+|+..++..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 388
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.86 E-value=0.041 Score=49.73 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=21.8
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
.-+.|.||+|+|||+|+++++..+.
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC
Confidence 3578999999999999999998763
No 389
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.82 E-value=0.048 Score=51.74 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=21.1
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
-+.|.||+|+|||+|+++||....
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 467999999999999999998763
No 390
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.81 E-value=0.044 Score=49.79 Aligned_cols=24 Identities=38% Similarity=0.728 Sum_probs=21.2
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
-+.|.||+|+|||+|+++++..+.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 467999999999999999998763
No 391
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.80 E-value=0.042 Score=49.99 Aligned_cols=25 Identities=36% Similarity=0.602 Sum_probs=21.8
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
.-+.|.||.|+|||+|+++|+..+.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3467999999999999999998764
No 392
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=92.79 E-value=0.14 Score=54.56 Aligned_cols=65 Identities=14% Similarity=0.177 Sum_probs=39.2
Q ss_pred CceeeeCCCCCCcHHHHHHHHHH-----hCCc----EEEE----------ecCCcC----C-----chHHHHHHHhcCCC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANY-----LHFD----VYDL----------ELSSVE----G-----NKHLRKVLIATENK 280 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~-----l~~~----~~~l----------~~~~~~----~-----~~~l~~~l~~~~~~ 280 (338)
+-++|.||.|+|||++++.+|.- .|.. ...+ ...+.. + -..+..++..+..+
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d~i~~~ig~~d~l~~~lStf~~e~~~~a~il~~a~~~ 742 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKD 742 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCSEEEEECC---------CHHHHHHHHHHHHHHHCCTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHhcCchhhHHHhHhhhHHHHHHHHHHHHhccCC
Confidence 45789999999999999998532 2321 1111 111100 0 11234555556789
Q ss_pred cEEEEcCCCccCC
Q 035959 281 SILVVGDIDCCTE 293 (338)
Q Consensus 281 ~Il~iDeiD~~~~ 293 (338)
++|+|||.-.-.+
T Consensus 743 sLlLLDEp~~GlD 755 (934)
T 3thx_A 743 SLIIIDELGRGTS 755 (934)
T ss_dssp CEEEEESCSCSSC
T ss_pred cEEEEeCCCCCCC
Confidence 9999999877654
No 393
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=92.78 E-value=0.057 Score=45.17 Aligned_cols=22 Identities=41% Similarity=0.626 Sum_probs=20.0
Q ss_pred ceeeeCCCCCCcHHHHHHHHHH
Q 035959 230 GYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~ 251 (338)
-+++.|++|+|||+|+.++...
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5799999999999999999874
No 394
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.75 E-value=0.058 Score=45.01 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=20.4
Q ss_pred CceeeeCCCCCCcHHHHHHHHHH
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~ 251 (338)
--+++.|++|+|||+|+.++...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35799999999999999999864
No 395
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.75 E-value=0.044 Score=50.15 Aligned_cols=24 Identities=29% Similarity=0.696 Sum_probs=21.3
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
-+.|.||.|+|||||+++++..+.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 467999999999999999998764
No 396
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.74 E-value=0.046 Score=45.44 Aligned_cols=22 Identities=41% Similarity=0.626 Sum_probs=19.6
Q ss_pred ceeeeCCCCCCcHHHHHHHHHH
Q 035959 230 GYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~ 251 (338)
-+.|.|+||+|||+|+.+++..
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3689999999999999999864
No 397
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.73 E-value=0.059 Score=44.40 Aligned_cols=23 Identities=17% Similarity=0.288 Sum_probs=20.0
Q ss_pred CceeeeCCCCCCcHHHHHHHHHH
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~ 251 (338)
-.+++.|++|+|||+|+.++...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999998853
No 398
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=92.73 E-value=0.058 Score=46.68 Aligned_cols=25 Identities=40% Similarity=0.522 Sum_probs=21.6
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhCC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLHF 254 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~~ 254 (338)
-.+|+||.|+|||+++.||+-.++.
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 3589999999999999999877754
No 399
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.72 E-value=0.044 Score=49.68 Aligned_cols=25 Identities=32% Similarity=0.570 Sum_probs=21.6
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
.-+.|.||.|+|||||+++++..+.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3467999999999999999998764
No 400
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.71 E-value=0.044 Score=49.33 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=21.2
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
-+.|.||+|+|||+|+++++..+.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999998763
No 401
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.71 E-value=0.052 Score=51.65 Aligned_cols=24 Identities=38% Similarity=0.639 Sum_probs=21.2
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
-+.|.||+|+|||+|+++||....
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCchHHHHHHHHhcCCC
Confidence 467999999999999999998763
No 402
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=92.70 E-value=0.19 Score=45.51 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=19.2
Q ss_pred ceeeeCCCCCCcHHHHHHHHH
Q 035959 230 GYLLFGPPGTGKSSLIAAMAN 250 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~ 250 (338)
-+.|.|+||+|||+|+.+++.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g 25 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITG 25 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 468999999999999999986
No 403
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.69 E-value=0.044 Score=52.14 Aligned_cols=24 Identities=25% Similarity=0.602 Sum_probs=21.2
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
-+.|.||+|+|||+|+++||....
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCchHHHHHHHHhcCCC
Confidence 467999999999999999998763
No 404
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.68 E-value=0.061 Score=45.19 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=19.6
Q ss_pred ceeeeCCCCCCcHHHHHHHHHH
Q 035959 230 GYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~ 251 (338)
-+++.|++|+|||+|+..+...
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4799999999999999998864
No 405
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=92.68 E-value=0.061 Score=44.99 Aligned_cols=23 Identities=17% Similarity=0.249 Sum_probs=20.1
Q ss_pred CceeeeCCCCCCcHHHHHHHHHH
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~ 251 (338)
..+++.|++|+|||+|+.++...
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35799999999999999999853
No 406
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.67 E-value=0.052 Score=48.45 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=20.9
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l 252 (338)
-+.|.|++|+|||++++.++..+
T Consensus 29 ~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 29 FIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp EEEEEESTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999887
No 407
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.64 E-value=0.078 Score=51.77 Aligned_cols=32 Identities=22% Similarity=0.205 Sum_probs=26.7
Q ss_pred eeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecC
Q 035959 231 YLLFGPPGTGKSSLIAAMANYL---HFDVYDLELS 262 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~ 262 (338)
+++.|+||+|||+++..+|... |.++..+++.
T Consensus 200 iiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 200 VLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 6899999999999998888765 6678777664
No 408
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.64 E-value=0.062 Score=45.46 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=20.3
Q ss_pred CceeeeCCCCCCcHHHHHHHHHH
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~ 251 (338)
.-+++.|++|+|||+|+.++...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35789999999999999999864
No 409
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.63 E-value=0.053 Score=51.53 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=21.1
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
-+.|.||+|+|||+|++++|....
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEEcCCCchHHHHHHHHHCCCC
Confidence 467999999999999999998763
No 410
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.62 E-value=0.062 Score=45.07 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.8
Q ss_pred ceeeeCCCCCCcHHHHHHHHHH
Q 035959 230 GYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~ 251 (338)
.+++.|++|+|||+|+.++...
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999863
No 411
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.61 E-value=0.054 Score=51.72 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=20.7
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l 252 (338)
-+.|.||+|+|||+|+++||...
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 46799999999999999999876
No 412
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.61 E-value=0.047 Score=45.02 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=19.8
Q ss_pred ceeeeCCCCCCcHHHHHHHHHH
Q 035959 230 GYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~ 251 (338)
-+++.|++|+|||+|+..++..
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 413
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.60 E-value=0.055 Score=51.87 Aligned_cols=24 Identities=33% Similarity=0.549 Sum_probs=21.2
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
-+.|.||+|+|||+|+++||....
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEcCCCchHHHHHHHHHcCCC
Confidence 467999999999999999998763
No 414
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.59 E-value=0.064 Score=45.24 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.4
Q ss_pred CceeeeCCCCCCcHHHHHHHHHH
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~ 251 (338)
-.+++.|++|+|||+|+.++...
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999864
No 415
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.58 E-value=0.046 Score=45.83 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=20.1
Q ss_pred CceeeeCCCCCCcHHHHHHHHHH
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~ 251 (338)
.-+++.|++|+|||+|+.++...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999998753
No 416
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.56 E-value=0.046 Score=45.43 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=19.3
Q ss_pred ceeeeCCCCCCcHHHHHHHHHH
Q 035959 230 GYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~ 251 (338)
-+++.|++|+|||+|+.++...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3689999999999999998863
No 417
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.54 E-value=0.049 Score=49.41 Aligned_cols=24 Identities=33% Similarity=0.786 Sum_probs=21.3
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l 252 (338)
.-+.|.||.|+|||||+++++..+
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 346799999999999999999876
No 418
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.54 E-value=0.11 Score=47.71 Aligned_cols=33 Identities=24% Similarity=0.314 Sum_probs=25.8
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEec
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLEL 261 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~ 261 (338)
.-+.+.|++|+|||+++..+|..+ +..+..+++
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 456788999999999999999876 456665554
No 419
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=92.54 E-value=0.063 Score=45.07 Aligned_cols=23 Identities=30% Similarity=0.616 Sum_probs=20.0
Q ss_pred CceeeeCCCCCCcHHHHHHHHHH
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~ 251 (338)
--+++.|++|+|||+|+.++...
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35799999999999999999863
No 420
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.53 E-value=0.055 Score=51.63 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=21.2
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
-+.|.||+|+|||+|+++||....
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCcHHHHHHHHHHcCCC
Confidence 467999999999999999998763
No 421
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.49 E-value=0.069 Score=44.87 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=19.4
Q ss_pred ceeeeCCCCCCcHHHHHHHHHH
Q 035959 230 GYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~ 251 (338)
-+++.|++|+|||+|+..+...
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999888764
No 422
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.47 E-value=0.066 Score=44.98 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=20.4
Q ss_pred CceeeeCCCCCCcHHHHHHHHHH
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~ 251 (338)
--+++.|++|+|||+|+.++...
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35799999999999999999874
No 423
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.47 E-value=0.066 Score=45.51 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=20.0
Q ss_pred CceeeeCCCCCCcHHHHHHHHHH
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~ 251 (338)
.-+++.|++|+|||+|+.++...
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35799999999999999999853
No 424
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.45 E-value=0.056 Score=45.64 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=20.1
Q ss_pred CceeeeCCCCCCcHHHHHHHHH
Q 035959 229 RGYLLFGPPGTGKSSLIAAMAN 250 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~ 250 (338)
.-+++.|+||+|||+|+.+++.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4578999999999999999987
No 425
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=92.39 E-value=0.058 Score=45.40 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=20.2
Q ss_pred CceeeeCCCCCCcHHHHHHHHHH
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~ 251 (338)
-.+++.|++|+|||+|+.++...
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35799999999999999999864
No 426
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.39 E-value=0.029 Score=47.51 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.5
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
.+.+.||+|+|||+|+..++..+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 467999999999999999999874
No 427
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=92.32 E-value=0.07 Score=50.30 Aligned_cols=22 Identities=45% Similarity=0.738 Sum_probs=19.9
Q ss_pred eeeeCCCCCCcHHHHHHHHHHh
Q 035959 231 YLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l 252 (338)
+.|.|+||+|||||+.+++..+
T Consensus 77 v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 77 VGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 5799999999999999999864
No 428
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.31 E-value=0.059 Score=45.23 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.5
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l 252 (338)
-+++.|++|+|||+|+.++...-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 429
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=92.30 E-value=0.13 Score=48.79 Aligned_cols=34 Identities=18% Similarity=0.201 Sum_probs=27.8
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELS 262 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~ 262 (338)
.+.++.||+|+|||++++.++..+ +..++.+|..
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~ 72 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPE 72 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 568999999999999999988764 5667777654
No 430
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.29 E-value=0.067 Score=45.21 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.0
Q ss_pred CceeeeCCCCCCcHHHHHHHHHH
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~ 251 (338)
-.+++.|++|+|||+|+.++...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999998753
No 431
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.26 E-value=0.061 Score=44.43 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=19.7
Q ss_pred CceeeeCCCCCCcHHHHHHHHH
Q 035959 229 RGYLLFGPPGTGKSSLIAAMAN 250 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~ 250 (338)
.-+++.|++|+|||+|+.++..
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 3578999999999999999984
No 432
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=92.25 E-value=0.12 Score=54.92 Aligned_cols=65 Identities=17% Similarity=0.210 Sum_probs=39.0
Q ss_pred CceeeeCCCCCCcHHHHHHHHHH-----hCC----cEEEE----------ecCCcCC---------chHHHHHHHhcCCC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANY-----LHF----DVYDL----------ELSSVEG---------NKHLRKVLIATENK 280 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~-----l~~----~~~~l----------~~~~~~~---------~~~l~~~l~~~~~~ 280 (338)
.-+.|.||.|+|||++++.++.- .|. .-..+ ...+... -.++..++..+..+
T Consensus 674 ~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~~p 753 (918)
T 3thx_B 674 RVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQ 753 (918)
T ss_dssp CEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHHHCCTT
T ss_pred eEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhccCC
Confidence 45789999999999999988742 221 11111 1111000 12233445556789
Q ss_pred cEEEEcCCCccCC
Q 035959 281 SILVVGDIDCCTE 293 (338)
Q Consensus 281 ~Il~iDeiD~~~~ 293 (338)
++|++||.-.-.+
T Consensus 754 ~LlLLDEP~~GlD 766 (918)
T 3thx_B 754 SLVILDELGRGTS 766 (918)
T ss_dssp CEEEEESTTTTSC
T ss_pred CEEEEeCCCCCCC
Confidence 9999999877655
No 433
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.23 E-value=0.11 Score=51.71 Aligned_cols=32 Identities=22% Similarity=0.232 Sum_probs=24.7
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEec
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL---HFDVYDLEL 261 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~ 261 (338)
-++|.||||+|||+|+..++... |..++.+..
T Consensus 283 i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ 317 (525)
T 1tf7_A 283 IILATGATGTGKTLLVSRFVENACANKERAILFAY 317 (525)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 46899999999999999998765 444555544
No 434
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=92.20 E-value=0.045 Score=45.34 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=9.4
Q ss_pred CceeeeCCCCCCcHHHHHHHHHH
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~ 251 (338)
.-+++.|++|+|||+|+.++...
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999998743
No 435
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=92.19 E-value=0.062 Score=45.63 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=20.0
Q ss_pred CceeeeCCCCCCcHHHHHHHHHH
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~ 251 (338)
.-+++.|++|+|||+|+.++...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999999863
No 436
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.18 E-value=0.078 Score=46.93 Aligned_cols=28 Identities=25% Similarity=0.296 Sum_probs=23.2
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhCC----cEEE
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLHF----DVYD 258 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~~----~~~~ 258 (338)
+.+.|++|+|||++++.++..++. +++.
T Consensus 24 i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 24 ITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 568899999999999999997754 5554
No 437
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.16 E-value=0.026 Score=48.13 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=19.1
Q ss_pred ceeeeCCCCCCcHHHHHHHHHH
Q 035959 230 GYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~ 251 (338)
-+.|.|++|+|||+|+.+++..
T Consensus 28 ~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 28 EVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999999999988753
No 438
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.09 E-value=0.057 Score=44.97 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.4
Q ss_pred CceeeeCCCCCCcHHHHHHHHHH
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~ 251 (338)
.-+++.|++|+|||+|+.++...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999998864
No 439
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.07 E-value=0.071 Score=46.74 Aligned_cols=23 Identities=22% Similarity=0.301 Sum_probs=20.8
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l 252 (338)
-+.|.|++|+|||+.++.++..+
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999988
No 440
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=92.05 E-value=0.066 Score=45.41 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.4
Q ss_pred CceeeeCCCCCCcHHHHHHHHHH
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~ 251 (338)
.-+++.|++|+|||+|+.++...
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 35799999999999999999874
No 441
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=92.05 E-value=0.079 Score=45.26 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.5
Q ss_pred CceeeeCCCCCCcHHHHHHHHHH
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~ 251 (338)
.-+++.|++|+|||+|+.++...
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999864
No 442
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=91.98 E-value=0.047 Score=51.68 Aligned_cols=24 Identities=25% Similarity=0.674 Sum_probs=21.2
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
-+.|.||+|+|||+|+++||....
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSSC
T ss_pred EEEEECCCCccHHHHHHHHHcCCC
Confidence 467999999999999999998763
No 443
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=91.95 E-value=0.074 Score=44.19 Aligned_cols=22 Identities=18% Similarity=0.448 Sum_probs=19.6
Q ss_pred CceeeeCCCCCCcHHHHHHHHH
Q 035959 229 RGYLLFGPPGTGKSSLIAAMAN 250 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~ 250 (338)
..+++.|++|+|||+|+.++..
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4579999999999999999875
No 444
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=91.94 E-value=0.078 Score=46.59 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.3
Q ss_pred CceeeeCCCCCCcHHHHHHHHHH
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~ 251 (338)
.-++|.|++|+|||+|+.++...
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHcCC
Confidence 45789999999999999999863
No 445
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.91 E-value=0.083 Score=52.13 Aligned_cols=32 Identities=16% Similarity=-0.014 Sum_probs=26.6
Q ss_pred eeeeCCCCCCcHHHHHHHHHHh----CCcEEEEecC
Q 035959 231 YLLFGPPGTGKSSLIAAMANYL----HFDVYDLELS 262 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l----~~~~~~l~~~ 262 (338)
++|.|+||+|||+++..+|..+ |.++..+++.
T Consensus 245 ~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 245 IMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp EEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred EEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 6899999999999999988765 4577777764
No 446
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=91.89 E-value=0.42 Score=48.98 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=49.3
Q ss_pred HHHHHHHHHhhhcCceeeeCCCCCCcHHHHHHHHHHhCCcEEEEecCCcCCchHHHHH-------------HHhcCCCcE
Q 035959 216 KKMIMDDLERAWKRGYLLFGPPGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKV-------------LIATENKSI 282 (338)
Q Consensus 216 k~~i~~~l~~~~~~g~LL~GppGtGKT~l~~aia~~l~~~~~~l~~~~~~~~~~l~~~-------------l~~~~~~~I 282 (338)
.+++++.+........+|.|++|+|||+++..++..+...+ .|......+...|.+. +.......+
T Consensus 180 Q~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~~~~-~vtAP~~~a~~~l~~~~~~~i~~~~Pd~~~~~~~~~dl 258 (671)
T 2zpa_A 180 QQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIAGRA-IVTAPAKASTDVLAQFAGEKFRFIAPDALLASDEQADW 258 (671)
T ss_dssp HHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSSSCE-EEECSSCCSCHHHHHHHGGGCCBCCHHHHHHSCCCCSE
T ss_pred HHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHHhCc-EEECCCHHHHHHHHHHhhCCeEEeCchhhhhCcccCCE
Confidence 34455555543333468999999999999999888886554 4444444433333332 123345789
Q ss_pred EEEcCCCccC
Q 035959 283 LVVGDIDCCT 292 (338)
Q Consensus 283 l~iDeiD~~~ 292 (338)
|||||.-.+.
T Consensus 259 liVDEAAaIp 268 (671)
T 2zpa_A 259 LVVDEAAAIP 268 (671)
T ss_dssp EEEETGGGSC
T ss_pred EEEEchhcCC
Confidence 9999998775
No 447
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.87 E-value=0.13 Score=49.87 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=27.1
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELS 262 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~ 262 (338)
..+++.||+|+|||+++..+|..+ +..+..+++.
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D 135 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecc
Confidence 456788999999999999999877 5566666553
No 448
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.84 E-value=0.077 Score=50.40 Aligned_cols=25 Identities=36% Similarity=0.519 Sum_probs=21.6
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
.-+.|.||+|+|||||+.+|+....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 4578999999999999999997654
No 449
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=91.74 E-value=0.075 Score=45.64 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=20.4
Q ss_pred CceeeeCCCCCCcHHHHHHHHHH
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~ 251 (338)
--+++.|++|+|||+|+..++..
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35799999999999999999874
No 450
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=91.72 E-value=0.069 Score=48.11 Aligned_cols=23 Identities=26% Similarity=0.574 Sum_probs=20.3
Q ss_pred CceeeeCCCCCCcHHHHHHHHHH
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~ 251 (338)
..+.|.|+||+|||+|+.++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999864
No 451
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=91.72 E-value=0.17 Score=43.98 Aligned_cols=29 Identities=31% Similarity=0.548 Sum_probs=24.2
Q ss_pred eeeeCCCCCCcHHHHHHHHHHh--CCcEEEE
Q 035959 231 YLLFGPPGTGKSSLIAAMANYL--HFDVYDL 259 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l--~~~~~~l 259 (338)
+.|-|+.|+||||+++.++..+ +.+++..
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~ 35 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 35 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHCCCCEEEe
Confidence 5688999999999999999988 5565554
No 452
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=91.72 E-value=0.092 Score=44.46 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=19.0
Q ss_pred ceeeeCCCCCCcHHHHHHHHH
Q 035959 230 GYLLFGPPGTGKSSLIAAMAN 250 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~ 250 (338)
-++|.|+||+|||+|+..++.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 378999999999999999985
No 453
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=91.62 E-value=0.29 Score=42.08 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=14.9
Q ss_pred cCceeeeCCCCCCcHHH
Q 035959 228 KRGYLLFGPPGTGKSSL 244 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l 244 (338)
.+.+++.+|+|+|||..
T Consensus 51 ~~~~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 51 GHDVLAQAQSGTGKTGT 67 (224)
T ss_dssp TCCEEEECCTTSSHHHH
T ss_pred CCCEEEECCCCCcHHHH
Confidence 35789999999999976
No 454
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=91.59 E-value=0.34 Score=50.62 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=18.1
Q ss_pred hhcCceeeeCCCCCCcHHHHHHHH
Q 035959 226 AWKRGYLLFGPPGTGKSSLIAAMA 249 (338)
Q Consensus 226 ~~~~g~LL~GppGtGKT~l~~aia 249 (338)
..+..+|+.||+|+|||..+...+
T Consensus 387 ~~~~~~Ll~a~TGSGKTlvall~i 410 (780)
T 1gm5_A 387 EKPMNRLLQGDVGSGKTVVAQLAI 410 (780)
T ss_dssp SSCCCCEEECCSSSSHHHHHHHHH
T ss_pred cCCCcEEEEcCCCCCHHHHHHHHH
Confidence 334578999999999998654433
No 455
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.57 E-value=0.13 Score=49.79 Aligned_cols=22 Identities=32% Similarity=0.449 Sum_probs=19.6
Q ss_pred eeeeCCCCCCcHHHHHHHHHHh
Q 035959 231 YLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l 252 (338)
+.|.||+|+|||||+++++...
T Consensus 72 valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 72 VAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 5699999999999999999843
No 456
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=91.57 E-value=0.095 Score=49.68 Aligned_cols=23 Identities=43% Similarity=0.547 Sum_probs=19.7
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l 252 (338)
-.+|+||.|+|||++..||+-.+
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999999999999998554
No 457
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=91.55 E-value=0.092 Score=44.28 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.3
Q ss_pred CceeeeCCCCCCcHHHHHHHHH
Q 035959 229 RGYLLFGPPGTGKSSLIAAMAN 250 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~ 250 (338)
--+++.|++|+|||+|+..+..
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3578999999999999999874
No 458
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.53 E-value=0.084 Score=44.26 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.4
Q ss_pred CceeeeCCCCCCcHHHHHHHHHH
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~ 251 (338)
..+++.|++|+|||+|+.++...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999999864
No 459
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.52 E-value=0.082 Score=45.30 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=20.1
Q ss_pred CceeeeCCCCCCcHHHHHHHHHH
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~ 251 (338)
.-+++.|++|+|||+|+.++...
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35799999999999999998864
No 460
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.51 E-value=0.051 Score=44.92 Aligned_cols=21 Identities=24% Similarity=0.539 Sum_probs=18.9
Q ss_pred CceeeeCCCCCCcHHHHHHHH
Q 035959 229 RGYLLFGPPGTGKSSLIAAMA 249 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia 249 (338)
.-+++.|++|+|||+|+.++.
T Consensus 19 ~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTC
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 457999999999999999887
No 461
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=91.51 E-value=0.39 Score=42.72 Aligned_cols=62 Identities=13% Similarity=0.206 Sum_probs=35.6
Q ss_pred eeeeCCCCCCcHHHHHHHH-HHh--CCcEEEEecCC-------cCC----------chHHHHHHHhcCCCcEEEEcCCCc
Q 035959 231 YLLFGPPGTGKSSLIAAMA-NYL--HFDVYDLELSS-------VEG----------NKHLRKVLIATENKSILVVGDIDC 290 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia-~~l--~~~~~~l~~~~-------~~~----------~~~l~~~l~~~~~~~Il~iDeiD~ 290 (338)
.+++||.|+|||+.+.-++ ++. |..++.+...- +.+ ......++......++|+|||+.-
T Consensus 22 ~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr~G~~~~a~~i~~~~di~~~~~~~dvViIDEaQF 101 (234)
T 2orv_A 22 QVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDEGQF 101 (234)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC-----------CEEEEESSGGGGHHHHTTCSEEEESSGGG
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhhcCCeeEEEecCCHHHHHHHhccCCEEEEEchhh
Confidence 5789999999997544444 333 55666554221 000 000011233335678999999998
Q ss_pred cC
Q 035959 291 CT 292 (338)
Q Consensus 291 ~~ 292 (338)
+.
T Consensus 102 ~~ 103 (234)
T 2orv_A 102 FP 103 (234)
T ss_dssp CT
T ss_pred hh
Confidence 73
No 462
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.50 E-value=0.073 Score=52.25 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=21.5
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l 252 (338)
.-+.|.||.|+|||+|++.+++.+
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCcc
Confidence 347899999999999999999976
No 463
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.49 E-value=0.079 Score=44.23 Aligned_cols=22 Identities=14% Similarity=0.383 Sum_probs=19.7
Q ss_pred CceeeeCCCCCCcHHHHHHHHH
Q 035959 229 RGYLLFGPPGTGKSSLIAAMAN 250 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~ 250 (338)
..+++.|++|+|||+|+.++..
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4579999999999999999984
No 464
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.48 E-value=0.14 Score=47.94 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=20.3
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l 252 (338)
-+.+.|+||+|||+++.+++..+
T Consensus 58 ~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 58 RLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 35789999999999999998765
No 465
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=91.45 E-value=0.094 Score=44.86 Aligned_cols=21 Identities=24% Similarity=0.540 Sum_probs=19.2
Q ss_pred ceeeeCCCCCCcHHHHHHHHH
Q 035959 230 GYLLFGPPGTGKSSLIAAMAN 250 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~ 250 (338)
-+++.|++|+|||+|+.++..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 579999999999999999885
No 466
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=91.44 E-value=0.31 Score=41.11 Aligned_cols=57 Identities=11% Similarity=0.159 Sum_probs=39.1
Q ss_pred eeee-CCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCC------------------chHHHHHHHhcC-CCcEEEEcC
Q 035959 231 YLLF-GPPGTGKSSLIAAMANYL---HFDVYDLELSSVEG------------------NKHLRKVLIATE-NKSILVVGD 287 (338)
Q Consensus 231 ~LL~-GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~------------------~~~l~~~l~~~~-~~~Il~iDe 287 (338)
+.++ +..|+|||+++..+|..+ |..+..+|+..-.+ ...+.+.+.... ..++++||=
T Consensus 4 i~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~yD~viiD~ 83 (206)
T 4dzz_A 4 ISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKAGKAAFDVFTAASEKDVYGIRKDLADYDFAIVDG 83 (206)
T ss_dssp EEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHTTSCCSSEEEECCSHHHHHTHHHHTTTSSEEEEEC
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhcCCCCCcEEecCcHHHHHHHHHhcCCCCEEEEEC
Confidence 3444 668999999999988776 78888888753221 134555666554 468888874
No 467
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.40 E-value=0.087 Score=44.93 Aligned_cols=22 Identities=18% Similarity=0.465 Sum_probs=20.1
Q ss_pred CceeeeCCCCCCcHHHHHHHHH
Q 035959 229 RGYLLFGPPGTGKSSLIAAMAN 250 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~ 250 (338)
..+++.|++|+|||+|+.++..
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHhc
Confidence 4689999999999999999986
No 468
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=91.40 E-value=0.091 Score=48.43 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=20.7
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
.-+.|.||+|+|||||+++++ ...
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 446799999999999999999 654
No 469
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=91.39 E-value=0.073 Score=49.58 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=21.1
Q ss_pred hcCceeeeCCCCCCcHHHHHHHHH
Q 035959 227 WKRGYLLFGPPGTGKSSLIAAMAN 250 (338)
Q Consensus 227 ~~~g~LL~GppGtGKT~l~~aia~ 250 (338)
..+|+||.|++|+|||+++.++..
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999998765
No 470
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.36 E-value=0.066 Score=49.29 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.2
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l 252 (338)
.-+.|.||.|+|||+|+++++..+
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 346799999999999999999876
No 471
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.35 E-value=0.047 Score=51.77 Aligned_cols=23 Identities=26% Similarity=0.631 Sum_probs=20.7
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHh
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l 252 (338)
-+.|.||+|+|||+|+++||...
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 46799999999999999999876
No 472
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=91.34 E-value=0.074 Score=48.97 Aligned_cols=26 Identities=35% Similarity=0.434 Sum_probs=22.0
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHhCC
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYLHF 254 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l~~ 254 (338)
.-+.|.||+|+|||||+++++.....
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~~ 195 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLKL 195 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred CeEEEECCCCCcHHHHHHHhcccccc
Confidence 44679999999999999999986643
No 473
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.34 E-value=0.077 Score=50.98 Aligned_cols=24 Identities=38% Similarity=0.603 Sum_probs=21.0
Q ss_pred CceeeeCCCCCCcHHHHHHHHHHh
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~l 252 (338)
.-+.|.||+|+|||+|+++|+...
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 346799999999999999999765
No 474
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=91.33 E-value=0.33 Score=45.49 Aligned_cols=45 Identities=22% Similarity=0.229 Sum_probs=35.2
Q ss_pred cCceeeeCCCCCCcHHHHHHHHHHh---CCcEEEEecCCcCCchHHHHHHH
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMANYL---HFDVYDLELSSVEGNKHLRKVLI 275 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~~~~~~~~~l~~~l~ 275 (338)
++-+++.|..|+|||+++.++|..+ |..+..+++.. ...+...|.
T Consensus 16 ~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~---~~~l~~~l~ 63 (334)
T 3iqw_A 16 LRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDP---AHNLSDAFS 63 (334)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCS---SCHHHHHHT
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCC---CCChhHHhc
Confidence 4566788999999999999999877 67888888773 335666664
No 475
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=91.31 E-value=0.099 Score=43.78 Aligned_cols=22 Identities=18% Similarity=0.371 Sum_probs=19.5
Q ss_pred CceeeeCCCCCCcHHHHHHHHH
Q 035959 229 RGYLLFGPPGTGKSSLIAAMAN 250 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~ 250 (338)
.-+++.|++|+|||+|+.++..
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4589999999999999999874
No 476
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=91.29 E-value=0.042 Score=48.79 Aligned_cols=23 Identities=39% Similarity=0.445 Sum_probs=20.5
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhC
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~ 253 (338)
+.|.||+|+|||+|+.+|+..+.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcccc
Confidence 35789999999999999999874
No 477
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.27 E-value=0.087 Score=46.23 Aligned_cols=28 Identities=29% Similarity=0.507 Sum_probs=22.8
Q ss_pred eeeeCCCCCCcHHHHHHHHHHhCCcEEEE
Q 035959 231 YLLFGPPGTGKSSLIAAMANYLHFDVYDL 259 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l~~~~~~l 259 (338)
+.|.||.|+|||++++.++.. +..+...
T Consensus 23 i~i~G~~GsGKSTl~~~L~~~-~g~v~~~ 50 (230)
T 2vp4_A 23 VLIEGNIGSGKTTYLNHFEKY-KNDICLL 50 (230)
T ss_dssp EEEECSTTSCHHHHHHTTGGG-TTTEEEE
T ss_pred EEEECCCCCCHHHHHHHHHhc-cCCeEEE
Confidence 568999999999999999987 5455444
No 478
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=91.25 E-value=0.098 Score=48.76 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.7
Q ss_pred cCceeeeCCCCCCcHHHHHHHHHH
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia~~ 251 (338)
.+|++|.|++|+|||+++.++...
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc
Confidence 568999999999999999999874
No 479
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.25 E-value=0.096 Score=50.91 Aligned_cols=21 Identities=38% Similarity=0.574 Sum_probs=19.3
Q ss_pred eeeeCCCCCCcHHHHHHHHHH
Q 035959 231 YLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~ 251 (338)
+.|.||+|+|||||+.+|+..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 679999999999999999875
No 480
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=91.25 E-value=0.11 Score=44.97 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=19.7
Q ss_pred ceeeeCCCCCCcHHHHHHHHHH
Q 035959 230 GYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~ 251 (338)
-+++.|++|+|||+|+.++...
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5789999999999999999863
No 481
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=91.24 E-value=0.085 Score=44.78 Aligned_cols=22 Identities=36% Similarity=0.661 Sum_probs=19.4
Q ss_pred CceeeeCCCCCCcHHHHHHHHH
Q 035959 229 RGYLLFGPPGTGKSSLIAAMAN 250 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~ 250 (338)
-.+++.|++|+|||+|+.++..
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 3579999999999999999874
No 482
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=91.24 E-value=0.08 Score=44.94 Aligned_cols=20 Identities=35% Similarity=0.629 Sum_probs=18.3
Q ss_pred ceeeeCCCCCCcHHHHHHHH
Q 035959 230 GYLLFGPPGTGKSSLIAAMA 249 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia 249 (338)
-+++.|++|+|||+|+..++
T Consensus 25 ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999985
No 483
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=91.19 E-value=0.087 Score=44.93 Aligned_cols=23 Identities=17% Similarity=0.327 Sum_probs=20.2
Q ss_pred CceeeeCCCCCCcHHHHHHHHHH
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~ 251 (338)
-.+++.|++|+|||+|+..+...
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 45899999999999999998853
No 484
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=91.17 E-value=0.078 Score=45.66 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=18.6
Q ss_pred ceeeeCCCCCCcHHHHHH-HHHH
Q 035959 230 GYLLFGPPGTGKSSLIAA-MANY 251 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~a-ia~~ 251 (338)
-+++.|++|+|||+|+.. +.+.
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 478999999999999998 4443
No 485
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=91.14 E-value=0.094 Score=44.48 Aligned_cols=23 Identities=17% Similarity=0.419 Sum_probs=20.4
Q ss_pred CceeeeCCCCCCcHHHHHHHHHH
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~ 251 (338)
.-+++.|++|+|||+|+.++...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999863
No 486
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.13 E-value=0.17 Score=50.28 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=24.6
Q ss_pred CceeeeCCCCCCcHHHHHH--HHHHh--CCcEEEEecCC
Q 035959 229 RGYLLFGPPGTGKSSLIAA--MANYL--HFDVYDLELSS 263 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~a--ia~~l--~~~~~~l~~~~ 263 (338)
.-++|.||+|+|||+|++. ++... +...+.++..+
T Consensus 40 e~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 40 RSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 78 (525)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 4578999999999999999 44433 33445555443
No 487
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=91.12 E-value=0.076 Score=44.12 Aligned_cols=22 Identities=14% Similarity=0.383 Sum_probs=19.7
Q ss_pred CceeeeCCCCCCcHHHHHHHHH
Q 035959 229 RGYLLFGPPGTGKSSLIAAMAN 250 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~ 250 (338)
-.+++.|++|+|||+|+.++..
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3579999999999999999985
No 488
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=91.02 E-value=0.074 Score=45.24 Aligned_cols=21 Identities=19% Similarity=0.509 Sum_probs=19.0
Q ss_pred ceeeeCCCCCCcHHHHHHHHH
Q 035959 230 GYLLFGPPGTGKSSLIAAMAN 250 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~ 250 (338)
-+++.|++|+|||+|+.+++.
T Consensus 27 ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEETTSSHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999874
No 489
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=90.97 E-value=0.1 Score=44.53 Aligned_cols=22 Identities=14% Similarity=0.311 Sum_probs=19.6
Q ss_pred ceeeeCCCCCCcHHHHHHHHHH
Q 035959 230 GYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~ 251 (338)
-+++.|++|+|||+|+..+...
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999853
No 490
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=90.96 E-value=0.093 Score=45.61 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.1
Q ss_pred CceeeeCCCCCCcHHHHHHHHHH
Q 035959 229 RGYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~~ 251 (338)
.-+++.|++|+|||+|+.+++..
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45799999999999999998753
No 491
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=90.89 E-value=0.11 Score=49.47 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=21.1
Q ss_pred ceeeeCCCCCCcHHHHHHHHHHhC
Q 035959 230 GYLLFGPPGTGKSSLIAAMANYLH 253 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~l~ 253 (338)
-+-|.||+|+|||+|+++++....
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEcCCCchHHHHHHHHhcCCC
Confidence 467999999999999999998763
No 492
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=90.89 E-value=0.098 Score=44.98 Aligned_cols=21 Identities=38% Similarity=0.635 Sum_probs=19.1
Q ss_pred ceeeeCCCCCCcHHHHHHHHH
Q 035959 230 GYLLFGPPGTGKSSLIAAMAN 250 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~ 250 (338)
-+++.|++|+|||+|+.++..
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 578999999999999999874
No 493
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=90.86 E-value=0.092 Score=44.32 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=19.3
Q ss_pred CceeeeCCCCCCcHHHHHHHHH
Q 035959 229 RGYLLFGPPGTGKSSLIAAMAN 250 (338)
Q Consensus 229 ~g~LL~GppGtGKT~l~~aia~ 250 (338)
--+++.|++|+|||+|+.++..
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCS
T ss_pred cEEEEECCCCCCHHHHHHHHHh
Confidence 3589999999999999999863
No 494
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=90.84 E-value=0.22 Score=43.94 Aligned_cols=62 Identities=15% Similarity=0.209 Sum_probs=35.9
Q ss_pred eeeCCCCCCcHH-HHHHHHHHh--CCcEEEEecCC--------cCC----------chHHHHHHHhc-CCCcEEEEcCCC
Q 035959 232 LLFGPPGTGKSS-LIAAMANYL--HFDVYDLELSS--------VEG----------NKHLRKVLIAT-ENKSILVVGDID 289 (338)
Q Consensus 232 LL~GppGtGKT~-l~~aia~~l--~~~~~~l~~~~--------~~~----------~~~l~~~l~~~-~~~~Il~iDeiD 289 (338)
+++||.|+|||+ |++.+-++. +..++.+...- +.+ ......++... .+..+|+|||+.
T Consensus 32 vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~~di~~~i~~~~dvV~IDEaQ 111 (219)
T 3e2i_A 32 CITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMTHDLTNVDVIGIDEVQ 111 (219)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-----------CBTTBCCEEEEESSGGGGGGSCCTTCSEEEECCGG
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCHHHHHHHHhcCCCEEEEechh
Confidence 689999999999 555554433 55655553321 100 01111222222 367899999999
Q ss_pred ccCC
Q 035959 290 CCTE 293 (338)
Q Consensus 290 ~~~~ 293 (338)
-+.+
T Consensus 112 Ff~~ 115 (219)
T 3e2i_A 112 FFDD 115 (219)
T ss_dssp GSCT
T ss_pred cCCH
Confidence 8754
No 495
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=90.78 E-value=0.24 Score=43.44 Aligned_cols=22 Identities=18% Similarity=0.409 Sum_probs=17.3
Q ss_pred cCceeeeCCCCCCcHHHHHHHH
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMA 249 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia 249 (338)
.+.+++.||+|+|||+++..+.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHH
Confidence 4568999999999998655443
No 496
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=90.78 E-value=0.24 Score=41.86 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=17.7
Q ss_pred cCceeeeCCCCCCcHHH-HHHHHHH
Q 035959 228 KRGYLLFGPPGTGKSSL-IAAMANY 251 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l-~~aia~~ 251 (338)
.+.+++.+|+|+|||.. +.++...
T Consensus 38 ~~~~li~~~TGsGKT~~~~~~~~~~ 62 (207)
T 2gxq_A 38 GKDLIGQARTGTGKTLAFALPIAER 62 (207)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEECCCCChHHHHHHHHHHHH
Confidence 36799999999999986 3334443
No 497
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=90.72 E-value=0.13 Score=44.31 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=19.8
Q ss_pred ceeeeCCCCCCcHHHHHHHHHH
Q 035959 230 GYLLFGPPGTGKSSLIAAMANY 251 (338)
Q Consensus 230 g~LL~GppGtGKT~l~~aia~~ 251 (338)
-+++.|++|+|||+|+..+...
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5799999999999999998864
No 498
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=90.68 E-value=0.11 Score=48.53 Aligned_cols=22 Identities=45% Similarity=0.640 Sum_probs=19.1
Q ss_pred eeeeCCCCCCcHHHHHHHHHHh
Q 035959 231 YLLFGPPGTGKSSLIAAMANYL 252 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l 252 (338)
.+|+||.|+|||+++.||+-.+
T Consensus 26 ~~i~G~NGsGKS~lleAi~~~l 47 (339)
T 3qkt_A 26 NLIIGQNGSGKSSLLDAILVGL 47 (339)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4799999999999999986544
No 499
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=90.65 E-value=0.24 Score=42.57 Aligned_cols=31 Identities=32% Similarity=0.321 Sum_probs=25.2
Q ss_pred eeeeCCCCCCcHHHHHHHHHHh---CCcEEEEec
Q 035959 231 YLLFGPPGTGKSSLIAAMANYL---HFDVYDLEL 261 (338)
Q Consensus 231 ~LL~GppGtGKT~l~~aia~~l---~~~~~~l~~ 261 (338)
+.|-|+.|+||||.++.+++.+ |.++....-
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tre 36 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 3578999999999999999988 667665543
No 500
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=90.64 E-value=0.38 Score=41.22 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=17.1
Q ss_pred cCceeeeCCCCCCcHHHHHHHH
Q 035959 228 KRGYLLFGPPGTGKSSLIAAMA 249 (338)
Q Consensus 228 ~~g~LL~GppGtGKT~l~~aia 249 (338)
.+.+++.+|+|+|||..+...+
T Consensus 51 ~~~~li~~~TGsGKT~~~~~~~ 72 (220)
T 1t6n_A 51 GMDVLCQAKSGMGKTAVFVLAT 72 (220)
T ss_dssp TCCEEEECCTTSCHHHHHHHHH
T ss_pred CCCEEEECCCCCchhhhhhHHH
Confidence 3568999999999998654444
Done!