BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035960
         (256 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2I54|A Chain A, Phosphomannomutase From Leishmania Mexicana
 pdb|2I54|B Chain B, Phosphomannomutase From Leishmania Mexicana
 pdb|2I54|C Chain C, Phosphomannomutase From Leishmania Mexicana
 pdb|2I55|A Chain A, Complex Of Glucose-1,6-Bisphosphate With
           Phosphomannomutase From Leishmania Mexicana
 pdb|2I55|B Chain B, Complex Of Glucose-1,6-Bisphosphate With
           Phosphomannomutase From Leishmania Mexicana
 pdb|2I55|C Chain C, Complex Of Glucose-1,6-Bisphosphate With
           Phosphomannomutase From Leishmania Mexicana
          Length = 247

 Score = 27.3 bits (59), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 18/73 (24%)

Query: 9   GLRNVS---SHCSISEMDDYDLSKLLDKPRLNIERQRSFDERSLSELSIGLTRGGVDNYE 65
           G+ NVS    +CS  E D+++          N++++R   E+ + EL     +    +Y+
Sbjct: 124 GMFNVSPIGRNCSQQERDEFE----------NLDKERHIREKLIREL-----KEAFPDYQ 168

Query: 66  STYSPGGRSGFDT 78
             YS GG+  FD 
Sbjct: 169 LAYSVGGQISFDV 181


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.138    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,643,056
Number of Sequences: 62578
Number of extensions: 302591
Number of successful extensions: 496
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 496
Number of HSP's gapped (non-prelim): 3
length of query: 256
length of database: 14,973,337
effective HSP length: 97
effective length of query: 159
effective length of database: 8,903,271
effective search space: 1415620089
effective search space used: 1415620089
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)