Query 035960
Match_columns 256
No_of_seqs 86 out of 105
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 13:23:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035960.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035960hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ulv_A Glucodextranase; GH fam 75.5 1.3 4.3E-05 45.6 2.5 52 113-164 304-362 (1020)
2 1lf6_A Glucoamylase; (alpha/al 74.2 0.95 3.2E-05 43.8 1.2 90 126-230 335-435 (684)
3 1v7w_A Chitobiose phosphorylas 74.2 0.48 1.6E-05 45.6 -0.9 101 134-238 349-488 (807)
4 3rrs_A Cellobiose phosphorylas 39.6 7.3 0.00025 39.0 0.5 78 134-222 367-473 (822)
5 2lqo_A Putative glutaredoxin R 33.1 19 0.00067 26.3 1.8 20 226-245 50-69 (92)
6 2fba_A Glucoamylase Glu1; (alp 29.2 18 0.00063 34.1 1.4 54 108-164 45-107 (492)
7 3qde_A Cellobiose phosphorylas 25.1 15 0.00053 36.5 0.1 78 134-222 360-466 (811)
8 1gai_A Glucoamylase-471; hydro 21.8 49 0.0017 31.2 2.8 54 108-164 30-90 (472)
9 3gv1_A Disulfide interchange p 20.2 46 0.0016 26.0 1.9 31 211-241 89-119 (147)
10 3dmo_A Cytidine deaminase; str 18.9 56 0.0019 26.4 2.2 33 88-120 10-42 (138)
No 1
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*
Probab=75.46 E-value=1.3 Score=45.59 Aligned_cols=52 Identities=21% Similarity=0.241 Sum_probs=42.1
Q ss_pred EEEeecCCCCcccC-------CCCceeeecchHHHHHHHhcCChhHHHHHHHHhhhccc
Q 035960 113 GTIAAYDHASEEVL-------NYDQVFVRDFVPSALAFLMNGEPDIVKNFLLKTLQLQG 164 (256)
Q Consensus 113 GTvAA~D~~~~~aL-------NYdqvFvRDFVPSalafLm~Ge~eIVkNFL~~tL~LQs 164 (256)
|.|||...+-.+.. +|.-||+||-.=++++|+..|.+|..+.||.-.+++|.
T Consensus 304 aiiAS~t~p~~e~~gg~rn~dgYry~W~RDaa~t~~all~~G~~e~A~~~l~~L~~~Q~ 362 (1020)
T 1ulv_A 304 AFIASLTIPWGQAASAETHREGYHAVWARDMYQSVTALLAAGDEEAAARGVEWLFTYQQ 362 (1020)
T ss_dssp CBCSCSSCTTGGGSBCSSCCCTTCSBCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTC
T ss_pred eEEEeCCCCcccccCCccCCCCCceEccchHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 34577665432222 48899999999999999999999999999999999884
No 2
>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A*
Probab=74.21 E-value=0.95 Score=43.75 Aligned_cols=90 Identities=18% Similarity=0.180 Sum_probs=59.3
Q ss_pred CCCCceeeecchHHHHHHHhcCChhHHHHHHHHhhhcccceeeecccccCCcccccceeeEE-eecCC--------ceEE
Q 035960 126 LNYDQVFVRDFVPSALAFLMNGEPDIVKNFLLKTLQLQGWEKRIDRFKLGEGAMPASSKFFT-ILFGK--------QILL 196 (256)
Q Consensus 126 LNYdqvFvRDFVPSalafLm~Ge~eIVkNFL~~tL~LQs~ek~iD~f~~g~GvmPASFKV~~-LDFGe--------~iIL 196 (256)
=+|.-||+||.+=++++++.-|.++..|.+|.-..+.|... | -++.-|.+.- ..+|+ .+++
T Consensus 335 ~dY~~~W~RD~~~~~~al~~~G~~~~a~~~l~~l~~~q~~~--------G--~~~~~~~~~G~p~w~~~Q~D~~g~~l~~ 404 (684)
T 1lf6_A 335 GGYHLVWSRDLYHVANAFIAAGDVDSANRSLDYLAKVVKDN--------G--MIPQNTWISGKPYWTGIQLDEQADPIIL 404 (684)
T ss_dssp CGGGSBCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH--------S--SCCSCBCTTSCBCCCCCCHHHHHHHHHH
T ss_pred CCCEEEeccHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC--------C--CcccceeCCCCcccCCccccchHHHHHH
Confidence 36999999999999999999999999999999988887421 1 1222221100 02332 2444
Q ss_pred EE-EeecCCCccccChh-hhhHHHHHHHHhhccCCC
Q 035960 197 LQ-ILSTGDLSLAETPE-CQKGMRLILALCLSEGFD 230 (256)
Q Consensus 197 Lr-~k~TgD~sla~~pe-~QrGirLIL~LCL~~~Fd 230 (256)
++ .+.+| ..|. |++++.-|++.--.++++
T Consensus 405 ~~~~~~~g-----~~~~~v~~al~~i~~~~~~~~~g 435 (684)
T 1lf6_A 405 SYRLKRYD-----LYDSLVKPLADFIIKIGPKTGQE 435 (684)
T ss_dssp HHHTTCGG-----GTTTTHHHHHHHHHHHCSSBSSC
T ss_pred HHHHHHcC-----chHHHHHHHHHHHHHhCCCCCcc
Confidence 44 44566 4565 888888888765444443
No 3
>1v7w_A Chitobiose phosphorylase; beta-sandwich, (alpha/alpha)6 barrel, transferase; HET: NDG NAG; 1.60A {Vibrio proteolyticus} SCOP: a.102.1.4 b.30.5.3 PDB: 1v7v_A* 1v7x_A*
Probab=74.20 E-value=0.48 Score=45.63 Aligned_cols=101 Identities=14% Similarity=0.157 Sum_probs=59.4
Q ss_pred ecchHHHHHHHhcCChhHHHHHHHHhhhcccceee-ecccc-----cCCcccccceeeEEe--------------ecCCc
Q 035960 134 RDFVPSALAFLMNGEPDIVKNFLLKTLQLQGWEKR-IDRFK-----LGEGAMPASSKFFTI--------------LFGKQ 193 (256)
Q Consensus 134 RDFVPSalafLm~Ge~eIVkNFL~~tL~LQs~ek~-iD~f~-----~g~GvmPASFKV~~L--------------DFGe~ 193 (256)
||.+-++++++ .|.||++|++|......|..+-. +-.+. +..|-+|.--+.... -++..
T Consensus 349 RD~~~~~~~l~-~~~p~~ar~~l~~~~~~Q~~~G~~~p~~~p~~~~~~~g~~~~~~~~~~~g~~~~~~~~~g~~~~~~D~ 427 (807)
T 1v7w_A 349 RDTAQDAISVP-HANPEMTRKRIVDLLRGQVKAGYGLHLFDPDWFDPEKEDVAPSKSPTVVPTPSDEDKIHGIKDTCSDD 427 (807)
T ss_dssp HHHHHHTTSCT-TTCHHHHHHHHHHHHHTBCTTSCBCSEECGGGGCC----------------------CCCGGGCBSSG
T ss_pred hHHhHHHHHHh-hcCHHHHHHHHHHHHhccccCCCcceeeeeccccccccccCCccccccccCCCcchhhcCCCCCccch
Confidence 99999999976 99999999999999988865431 11111 111222111000000 11222
Q ss_pred ----eEEEE--EeecCCCccccCh-------------hhhhHHHHHHHHhhccCCCCCcceeec
Q 035960 194 ----ILLLQ--ILSTGDLSLAETP-------------ECQKGMRLILALCLSEGFDTFPTLLCA 238 (256)
Q Consensus 194 ----iILLr--~k~TgD~sla~~p-------------e~QrGirLIL~LCL~~~Fd~fPTLLvp 238 (256)
++.++ .+.|||.+|.+.. .+++++.-+++.+-. +..|..-..
T Consensus 428 ~lw~~~~~~~y~~~tGD~~~L~e~~p~~~~~~~~v~e~~~~~~~~~~~~~~~---~GL~~~~~~ 488 (807)
T 1v7w_A 428 HLWLIPTICKYVMETGETSFFDQMIPYADGGEASVYEHMKAALDFSAEYVGQ---TGICKGLRA 488 (807)
T ss_dssp GGGHHHHHHHHHHHHCCGGGGGCEEECTTSCEEEHHHHHHHHHHHHHHSBCT---TSCBEEETC
T ss_pred hhHHHHHHHHHHHHhCCHHHHhcccccccCCcchHHHHHHHHHHHHHhcCCC---CCCcccCCC
Confidence 33444 7999999998864 388888888775433 455554333
No 4
>3rrs_A Cellobiose phosphorylase; GH94, alpha barrel, disaccharide phosphorylase, transferase; 1.70A {Cellulomonas uda} PDB: 3rsy_A* 3s4a_A* 3s4b_A* 3s4c_A* 3s4d_A* 2cqs_A* 2cqt_A* 3qfy_A* 3qfz_A* 3qg0_A* 3act_A* 3acs_A* 3afj_A*
Probab=39.63 E-value=7.3 Score=38.96 Aligned_cols=78 Identities=18% Similarity=0.186 Sum_probs=54.0
Q ss_pred ecchHHHHHHHhcCChhHHHHHHHHhhhcccceeeecccccCCccccccee--eE-Ee-----ecCCc----eEEEE--E
Q 035960 134 RDFVPSALAFLMNGEPDIVKNFLLKTLQLQGWEKRIDRFKLGEGAMPASSK--FF-TI-----LFGKQ----ILLLQ--I 199 (256)
Q Consensus 134 RDFVPSalafLm~Ge~eIVkNFL~~tL~LQs~ek~iD~f~~g~GvmPASFK--V~-~L-----DFGe~----iILLr--~ 199 (256)
||-.=-+++++. ..||+||++|+.+...|-.+ |-+|.-|. .. .. .+.+. |..++ .
T Consensus 367 RD~~qd~~~~~~-~~pe~ar~~il~~~~~Q~~d----------G~v~h~~~p~~~~g~~~~~~~~~D~~lWl~~av~~Yi 435 (822)
T 3rrs_A 367 RDSNQDLLGFVH-LIPERARERIIDIASTQFAD----------GSAYHQYQPLTKRGNNDIGSGFNDDPLWLIAGTAAYI 435 (822)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHTTCCTT----------SCCCSEEETTTTEECTTTCSCBTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-cCHHHHHHHHHHHHHhhccc----------CcccceecCcCCCCccCCCCcccchHhHHHHHHHHHH
Confidence 999989999986 57999999999999988543 55555552 00 01 13333 22233 8
Q ss_pred eecCCCccccC---------------hhhhhHHHHHHH
Q 035960 200 LSTGDLSLAET---------------PECQKGMRLILA 222 (256)
Q Consensus 200 k~TgD~sla~~---------------pe~QrGirLIL~ 222 (256)
+.|||.+|.+. ..|.+++.-+++
T Consensus 436 ~~TGD~~~L~e~~p~~~~~~~~~tl~eh~~ra~~~~~~ 473 (822)
T 3rrs_A 436 KETGDFSILDEPVPFDNEPGSEVPLFEHLTRSFEFTVT 473 (822)
T ss_dssp HHHCCGGGGGSEECSTTCTTCCEEHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHhhhhhhccccccccHHHHHHHHHHHHHh
Confidence 99999999864 267777777775
No 5
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=33.09 E-value=19 Score=26.32 Aligned_cols=20 Identities=35% Similarity=0.577 Sum_probs=17.6
Q ss_pred ccCCCCCcceeecCcccccc
Q 035960 226 SEGFDTFPTLLCADGCSMID 245 (256)
Q Consensus 226 ~~~Fd~fPTLLvpDG~~MID 245 (256)
+.|..+.|++++.||..++.
T Consensus 50 ~~G~~tVP~I~i~Dg~~l~~ 69 (92)
T 2lqo_A 50 NGGNRTVPTVKFADGSTLTN 69 (92)
T ss_dssp SSSSSCSCEEEETTSCEEES
T ss_pred cCCCCEeCEEEEeCCEEEeC
Confidence 57899999999999998764
No 6
>2fba_A Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hydrolase; 1.10A {Saccharomycopsis fibuligera} SCOP: a.102.1.1 PDB: 1ayx_A* 2f6d_A
Probab=29.20 E-value=18 Score=34.06 Aligned_cols=54 Identities=22% Similarity=0.255 Sum_probs=41.9
Q ss_pred cCeeeEEEee-cCCCCcccCCCCceeeecchHHHHHHHhcCC--------hhHHHHHHHHhhhccc
Q 035960 108 RGQPVGTIAA-YDHASEEVLNYDQVFVRDFVPSALAFLMNGE--------PDIVKNFLLKTLQLQG 164 (256)
Q Consensus 108 ~G~pVGTvAA-~D~~~~~aLNYdqvFvRDFVPSalafLm~Ge--------~eIVkNFL~~tL~LQs 164 (256)
.|.+-|.|.| ...+. -+|.=|++||-.=++.+|+..|. .+++++|+.-...||.
T Consensus 45 ~~~~~GaiIASpttsn---pDYrY~W~RDaa~t~~aL~~~g~~~~~~~~l~~~a~~y~~~~~~lq~ 107 (492)
T 2fba_A 45 NNGVPGTVIASPSTSN---PDYYYQWTRDSAITFLTVLSELEDNNFNTTLAKAVEYYINTSYNLQR 107 (492)
T ss_dssp TTSCTTCBCSCSCBSS---SBCCSEEHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCeEEEeCCCCC---CCCeEEccchHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHhc
Confidence 5667777654 44432 36999999999999999999998 9999999996555553
No 7
>3qde_A Cellobiose phosphorylase; cellulase, phosphate, transferase; 2.40A {Clostridium thermocellum}
Probab=25.13 E-value=15 Score=36.49 Aligned_cols=78 Identities=23% Similarity=0.249 Sum_probs=52.8
Q ss_pred ecchHHHHHHHhcCChhHHHHHHHHhhhcccceeeecccccCCccccccee------eEEe--ecCCc----eEEEE--E
Q 035960 134 RDFVPSALAFLMNGEPDIVKNFLLKTLQLQGWEKRIDRFKLGEGAMPASSK------FFTI--LFGKQ----ILLLQ--I 199 (256)
Q Consensus 134 RDFVPSalafLm~Ge~eIVkNFL~~tL~LQs~ek~iD~f~~g~GvmPASFK------V~~L--DFGe~----iILLr--~ 199 (256)
||-.=-+++++. ..||+||++|+.+...|-. .|-+|.-|. +..+ .+.+. |..++ .
T Consensus 360 RD~~qd~~~~~~-~~p~~~r~~il~~~~~Q~~----------dG~~~h~~~p~~~~g~~~~~~~~~D~~lW~i~av~~Y~ 428 (811)
T 3qde_A 360 RDSNQDLLGFVH-QIPERARERLLDLAATQLE----------DGSAYHQYQPLTKKGNNEIGSNFNDDPLWLILATAAYI 428 (811)
T ss_dssp HHHHHHHHTTTT-TCHHHHHHHHHHHHTTBCT----------TSCBCSEECTTTCCEECTTCCCBTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-cCHHHHHHHHHHHHhhccc----------CCCccceecCCCCCCCCCCCCCcccchhHHHHHHHHHH
Confidence 999989999876 5799999999999998853 344444442 0001 13333 22233 8
Q ss_pred eecCCCccccC---------------hhhhhHHHHHHH
Q 035960 200 LSTGDLSLAET---------------PECQKGMRLILA 222 (256)
Q Consensus 200 k~TgD~sla~~---------------pe~QrGirLIL~ 222 (256)
+.|||.+|.+. ..|.+++.-+++
T Consensus 429 ~~TGD~~~L~e~~p~~~~~~~~~tl~eh~~ra~~~~~~ 466 (811)
T 3qde_A 429 KETGDYSILKEQVPFNNDPSKADTMFEHLTRSFYHVVN 466 (811)
T ss_dssp HHHCCGGGGGSEEEETTEEEEEEEHHHHHHHHHHHHHT
T ss_pred HHHCCHHHHHhhhhhhcCCcccccHHHHHHHHHHHHHh
Confidence 99999999864 367777777764
No 8
>1gai_A Glucoamylase-471; hydrolase, glycosidase, polysaccharide degradation, glycoPro; HET: MAN NAG BMA GAC; 1.70A {Aspergillus awamori} SCOP: a.102.1.1 PDB: 1gah_A* 3gly_A* 1dog_A* 1glm_A* 1agm_A* 3eqa_A*
Probab=21.79 E-value=49 Score=31.22 Aligned_cols=54 Identities=19% Similarity=0.315 Sum_probs=38.7
Q ss_pred cCeeeEEE-eecCCCCcccCCCCceeeecchHHHHHHH---hcCC---hhHHHHHHHHhhhccc
Q 035960 108 RGQPVGTI-AAYDHASEEVLNYDQVFVRDFVPSALAFL---MNGE---PDIVKNFLLKTLQLQG 164 (256)
Q Consensus 108 ~G~pVGTv-AA~D~~~~~aLNYdqvFvRDFVPSalafL---m~Ge---~eIVkNFL~~tL~LQs 164 (256)
.|-|-|.| ||...+. -+|.=|++||-.=.+.+|+ ..|. .+.+.+||.....||.
T Consensus 30 ~~~~tGaiIASpttsn---pDYrY~W~RDaa~t~~aL~~~~~~G~~~~a~~~~~~l~~~~~lQ~ 90 (472)
T 1gai_A 30 SGADSGIVVASPSTDN---PDYFYTWTRDSGLVIKTLVDLFRNGDTDLLSTIEHYISSQAIIQG 90 (472)
T ss_dssp TTCCTTCBCSCSCBSS---SBCCSEEHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHH
T ss_pred CCCCCceEEeeCCCCC---CCCeEEchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhc
Confidence 34455655 4444432 3699999999999999999 6664 6777788888777773
No 9
>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}
Probab=20.17 E-value=46 Score=25.95 Aligned_cols=31 Identities=26% Similarity=0.396 Sum_probs=25.2
Q ss_pred hhhhhHHHHHHHHhhccCCCCCcceeecCcc
Q 035960 211 PECQKGMRLILALCLSEGFDTFPTLLCADGC 241 (256)
Q Consensus 211 pe~QrGirLIL~LCL~~~Fd~fPTLLvpDG~ 241 (256)
++|...++--..+.-.-|...+||+++.||-
T Consensus 89 ~~~~~~v~~~~~la~~~gI~gtPt~vi~nG~ 119 (147)
T 3gv1_A 89 SICDNPVAETTSLGEQFGFNGTPTLVFPNGR 119 (147)
T ss_dssp CCCSCSHHHHHHHHHHTTCCSSCEEECTTSC
T ss_pred HHHHHHHHHHHHHHHHhCCCccCEEEEECCE
Confidence 5566667777777788899999999998885
No 10
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei}
Probab=18.90 E-value=56 Score=26.44 Aligned_cols=33 Identities=15% Similarity=0.232 Sum_probs=28.5
Q ss_pred CCChhHHHHHHHHhhcceeecCeeeEEEeecCC
Q 035960 88 EPHPMVAEAWEALRRSLVYFRGQPVGTIAAYDH 120 (256)
Q Consensus 88 ~~~~~~~eAwe~L~~SlV~~~G~pVGTvAA~D~ 120 (256)
.-|.++++|.++.+++..-|-+-+||...=.+.
T Consensus 10 ~~~~L~~~A~~a~~~AyaPYS~F~VGAAll~~d 42 (138)
T 3dmo_A 10 THHALIEAAKAAREKAYAPYSNFKVGAALVTND 42 (138)
T ss_dssp CHHHHHHHHHHHHTTCBCTTTCCCEEEEEEETT
T ss_pred cHHHHHHHHHHHHHhccCCcCCCCEEEEEEeCC
Confidence 457899999999999999999999998765544
Done!