BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035961
(630 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KSR|A Chain A, The Repeating Segments Of The F-Actin Cross-Linking
Gelation Factor (Abp-120) Have An Immunoglobulin Fold,
Nmr, 20 Structures
Length = 100
Score = 35.8 bits (81), Expect = 0.081, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 198 GLDGGKLMELSAGDIHEFSLSSIGCV-GGDYFETDLSGESWKSRPVVKDFGNGTYSLSLQ 256
GLDGG+ + S IH + GGD F + G + PV+ D G+GTY + +
Sbjct: 12 GLDGGECFQPSKFKIHAVDPDGVHRTDGGDGFVVTIEGPA-PVDPVMVDNGDGTYDVEFE 70
Query: 257 VHPDFVGDY--NLTV 269
P GDY NLT+
Sbjct: 71 --PKEAGDYVINLTL 83
>pdb|1WLH|A Chain A, Molecular Structure Of The Rod Domain Of Dictyostelium
Filamin
pdb|1WLH|B Chain B, Molecular Structure Of The Rod Domain Of Dictyostelium
Filamin
Length = 311
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Query: 185 PCRDSRTVEIAIHGLDGGKLMELSAGDIHEFSLSSIGCV-GGDYFETDLSGESWKSRPVV 243
P D GLDGG+ + S IH + GGD F + G + PV+
Sbjct: 1 PAADPEKSYAEGPGLDGGECFQPSKFKIHAVDPDGVHRTDGGDGFVVTIEGPA-PVDPVM 59
Query: 244 KDFGNGTYSLSLQVHPDFVGDYNLTVIL 271
D G+GTY + + P GDY + + L
Sbjct: 60 VDNGDGTYDVEFE--PKEAGDYVINLTL 85
>pdb|1J3I|C Chain C, Wild-Type Plasmodium Falciparum Dihydrofolate Reductase-
Thymidylate Synthase (Pfdhfr-Ts) Complexed With Wr99210,
Nadph, And Dump
pdb|1J3I|D Chain D, Wild-Type Plasmodium Falciparum Dihydrofolate Reductase-
Thymidylate Synthase (Pfdhfr-Ts) Complexed With Wr99210,
Nadph, And Dump
pdb|1J3J|C Chain C, Double Mutant (C59r+s108n) Plasmodium Falciparum
Dihydrofolate Reductase-Thymidylate Synthase (Pfdhfr-Ts)
Complexed With Pyrimethamine, Nadph, And Dump
pdb|1J3J|D Chain D, Double Mutant (C59r+s108n) Plasmodium Falciparum
Dihydrofolate Reductase-Thymidylate Synthase (Pfdhfr-Ts)
Complexed With Pyrimethamine, Nadph, And Dump
pdb|1J3K|C Chain C, Quadruple Mutant (n51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-thymidylate Synthase
(pfdhfr-ts) Complexed With Wr99210, Nadph, And Dump
pdb|1J3K|D Chain D, Quadruple Mutant (n51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-thymidylate Synthase
(pfdhfr-ts) Complexed With Wr99210, Nadph, And Dump
pdb|3DG8|C Chain C, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With Rjf670, Nadph, And Dump
pdb|3DG8|D Chain D, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With Rjf670, Nadph, And Dump
pdb|3DGA|C Chain C, Wild-Type Plasmodium Falciparum Dihydrofolate Reductase-
Thymidylate Synthase (Pfdhfr-Ts) Complexed With
Rjf01302, Nadph, And Dump
pdb|3DGA|D Chain D, Wild-Type Plasmodium Falciparum Dihydrofolate Reductase-
Thymidylate Synthase (Pfdhfr-Ts) Complexed With
Rjf01302, Nadph, And Dump
Length = 328
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Query: 52 QVWNLKQDRFVAVRANATV-----DAAQIQLNLTVNTSSVQDLPTQREKPQLNDVKNFTS 106
QV NL+ +F+ V NA V D+ +IQLN PT + P + ++++FT
Sbjct: 254 QVCNLQPAQFIHVLGNAHVYNNHIDSLKIQLN-----RIPYPFPTLKLNPDIKNIEDFTI 308
Query: 107 NDSPSLNLTH 116
+D N H
Sbjct: 309 SDFTIQNYVH 318
>pdb|3UM5|A Chain A, Double Mutant (A16v+s108t) Plasmodium Falciparum
Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts-T994) COMPLEXED WITH Pyrimethamine, Nadph,
And Dump
pdb|3UM5|B Chain B, Double Mutant (A16v+s108t) Plasmodium Falciparum
Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts-T994) COMPLEXED WITH Pyrimethamine, Nadph,
And Dump
pdb|3UM6|A Chain A, Double Mutant (A16v+s108t) Plasmodium Falciparum Dhfr-Ts
(T994) Complexed With Cycloguanil, Nadph And Dump
pdb|3UM6|B Chain B, Double Mutant (A16v+s108t) Plasmodium Falciparum Dhfr-Ts
(T994) Complexed With Cycloguanil, Nadph And Dump
Length = 608
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Query: 52 QVWNLKQDRFVAVRANATV-----DAAQIQLNLTVNTSSVQDLPTQREKPQLNDVKNFTS 106
QV NL+ +F+ V NA V D+ +IQLN PT + P + ++++FT
Sbjct: 534 QVCNLQPAQFIHVLGNAHVYNNHIDSLKIQLN-----RIPYPFPTLKLNPDIKNIEDFTI 588
Query: 107 NDSPSLNLTH 116
+D N H
Sbjct: 589 SDFTIQNYVH 598
>pdb|3QGT|A Chain A, Crystal Structure Of Wild-Type Pfdhfr-Ts Complexed With
Nadph, Dump And Pyrimethamine
pdb|3QGT|B Chain B, Crystal Structure Of Wild-Type Pfdhfr-Ts Complexed With
Nadph, Dump And Pyrimethamine
pdb|3UM8|A Chain A, Wild-Type Plasmodium Falciparum Dhfr-Ts Complexed With
Cycloguanil And Nadph
pdb|3UM8|B Chain B, Wild-Type Plasmodium Falciparum Dhfr-Ts Complexed With
Cycloguanil And Nadph
pdb|4DPD|A Chain A, Wild Type Plasmodium Falciparum Dihydrofolate
Reductase-Thymidylate Synthase (Pfdhfr-Ts), Dhf Complex,
Nadp+, Dump
pdb|4DPD|B Chain B, Wild Type Plasmodium Falciparum Dihydrofolate
Reductase-Thymidylate Synthase (Pfdhfr-Ts), Dhf Complex,
Nadp+, Dump
Length = 608
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Query: 52 QVWNLKQDRFVAVRANATV-----DAAQIQLNLTVNTSSVQDLPTQREKPQLNDVKNFTS 106
QV NL+ +F+ V NA V D+ +IQLN PT + P + ++++FT
Sbjct: 534 QVCNLQPAQFIHVLGNAHVYNNHIDSLKIQLN-----RIPYPFPTLKLNPDIKNIEDFTI 588
Query: 107 NDSPSLNLTH 116
+D N H
Sbjct: 589 SDFTIQNYVH 598
>pdb|3JSU|A Chain A, Quadruple Mutant(N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate
Synthase(Pfdhfr-Ts) Complexed With Qn254, Nadph, And
Dump
pdb|3JSU|B Chain B, Quadruple Mutant(N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate
Synthase(Pfdhfr-Ts) Complexed With Qn254, Nadph, And
Dump
pdb|3QG2|A Chain A, Plasmodium Falciparum Dhfr-Ts Qradruple Mutant
(N51i+c59r+s108n+i164l, V1S) PYRIMETHAMINE COMPLEX
pdb|3QG2|B Chain B, Plasmodium Falciparum Dhfr-Ts Qradruple Mutant
(N51i+c59r+s108n+i164l, V1S) PYRIMETHAMINE COMPLEX
pdb|4DP3|A Chain A, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With P218 And Nadph
pdb|4DP3|B Chain B, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With P218 And Nadph
pdb|4DPH|A Chain A, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With P65 And Nadph
pdb|4DPH|B Chain B, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With P65 And Nadph
Length = 608
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Query: 52 QVWNLKQDRFVAVRANATV-----DAAQIQLNLTVNTSSVQDLPTQREKPQLNDVKNFTS 106
QV NL+ +F+ V NA V D+ +IQLN PT + P + ++++FT
Sbjct: 534 QVCNLQPAQFIHVLGNAHVYNNHIDSLKIQLN-----RIPYPFPTLKLNPDIKNIEDFTI 588
Query: 107 NDSPSLNLTH 116
+D N H
Sbjct: 589 SDFTIQNYVH 598
>pdb|3NKE|A Chain A, High Resolution Structure Of The C-Terminal Domain
Crisp-Associated Protein Cas1 From Escherichia Coli Str.
K-12
pdb|3NKE|B Chain B, High Resolution Structure Of The C-Terminal Domain
Crisp-Associated Protein Cas1 From Escherichia Coli Str.
K-12
pdb|3NKE|C Chain C, High Resolution Structure Of The C-Terminal Domain
Crisp-Associated Protein Cas1 From Escherichia Coli Str.
K-12
Length = 200
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 410 LNFVLDLPDI----KAVPRRFDLNFSNPKDPSQSVRI 442
L+FV D+ DI VP+ F++ NP +P + VR+
Sbjct: 122 LSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRL 158
>pdb|3NKD|A Chain A, Structure Of Crisp-Associated Protein Cas1 From
Escherichia Coli Str. K-12
pdb|3NKD|B Chain B, Structure Of Crisp-Associated Protein Cas1 From
Escherichia Coli Str. K-12
Length = 305
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 410 LNFVLDLPDI----KAVPRRFDLNFSNPKDPSQSVRIT 443
L+FV D+ DI VP+ F++ NP +P + VR+
Sbjct: 213 LSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRLA 250
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,867,803
Number of Sequences: 62578
Number of extensions: 860225
Number of successful extensions: 1734
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1732
Number of HSP's gapped (non-prelim): 13
length of query: 630
length of database: 14,973,337
effective HSP length: 105
effective length of query: 525
effective length of database: 8,402,647
effective search space: 4411389675
effective search space used: 4411389675
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)