BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035961
         (630 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q99KW3|TARA_MOUSE TRIO and F-actin-binding protein OS=Mus musculus GN=Triobp PE=1
           SV=3
          Length = 2014

 Score = 35.8 bits (81), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 30/70 (42%)

Query: 84  SSVQDLPTQREKPQLNDVKNFTSNDSPSLNLTHLNQTSVASSISKNSSKVAQQNPLQQKP 143
           +S+   PTQ +KPQ +       ND P      L  TS +S    +SS     +PL   P
Sbjct: 608 ASISLRPTQGDKPQTSAPTRLAHNDPPQQYSPSLATTSSSSHNPGHSSASRTSSPLHAAP 667

Query: 144 SGALPNRSES 153
            GA     ES
Sbjct: 668 RGAPQTSLES 677


>sp|P13466|GELA_DICDI Gelation factor OS=Dictyostelium discoideum GN=abpC PE=1 SV=1
          Length = 857

 Score = 35.0 bits (79), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 4/89 (4%)

Query: 184 EPCRDSRTVEIAIHGLDGGKLMELSAGDIHEFSLSSIGCV-GGDYFETDLSGESWKSRPV 242
           +P  D         GLDGG+  + S   IH      +    GGD F   + G +    PV
Sbjct: 546 KPAADPEKSYAEGPGLDGGECFQPSKFKIHAVDPDGVHRTDGGDGFVVTIEGPA-PVDPV 604

Query: 243 VKDFGNGTYSLSLQVHPDFVGDYNLTVIL 271
           + D G+GTY +  +  P   GDY + + L
Sbjct: 605 MVDNGDGTYDVEFE--PKEAGDYVINLTL 631


>sp|Q9UTM5|YIJ1_SCHPO Uncharacterized protein C1420.01c OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=SPAC1420.01c PE=4 SV=2
          Length = 580

 Score = 34.7 bits (78), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 56/109 (51%), Gaps = 8/109 (7%)

Query: 74  QIQLNLTV--NTSSVQDLPTQREKPQLNDVKNFTS-NDSPSLNLTHLNQTSVASSISKNS 130
           Q  LN++V  N  + + + T    P LN  K+ TS ND+ S  +  +  TS   S+S N+
Sbjct: 204 QAYLNVSVSENEHADRSIKTHSSAPPLNQQKSSTSVNDAVSKAIQLVKSTSDLGSLSTNT 263

Query: 131 SKVAQQNPLQQKP----SGALPNRSESPVLESLKWVSVDLEPNLSTNLL 175
           S  AQ+N   +KP    S A+   S +  LE  K   V + P+ ST+++
Sbjct: 264 SSTAQKNK-SRKPTKSFSDAVAAASRAKELEKEKLSKVTVTPDDSTSII 311


>sp|P20712|DRTS_PLACH Bifunctional dihydrofolate reductase-thymidylate synthase
           OS=Plasmodium chabaudi PE=3 SV=1
          Length = 583

 Score = 34.7 bits (78), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 56/109 (51%), Gaps = 17/109 (15%)

Query: 26  GVLTALVF-----MGVVVVWSIDGCTIDNFV--QVWNLKQDRFVAVRANATV-----DAA 73
           G L+ +++     +G+ V ++I   +I  ++  QV NL+   F+ V  NA V     ++ 
Sbjct: 476 GKLSCIMYQRSCDLGLGVPFNIASYSIFTYMIAQVCNLQPAEFIHVLGNAHVYNNHVESL 535

Query: 74  QIQLNLTVNTSSVQDLPTQREKPQLNDVKNFTSNDSPSLNLTHLNQTSV 122
           ++QLN T         PT +  P++ ++++FT +D    N  H ++ S+
Sbjct: 536 KVQLNRTP-----YPFPTLKLNPEIKNIEDFTISDFTVQNYVHHDKISM 579


>sp|Q96HM7|PED1B_HUMAN PC-esterase domain-containing protein 1B OS=Homo sapiens GN=PCED1B
           PE=2 SV=1
          Length = 432

 Score = 34.3 bits (77), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 104/276 (37%), Gaps = 63/276 (22%)

Query: 379 MFSADSAWNCLKNRWIFFWGDSNHVDTIRNML-----NFVLDLPDIKAVPRRFDLNFSNP 433
           +  A      L N+++   GDS H    ++++     + +L    ++A   R +LNF   
Sbjct: 3   LLRASEVRQLLHNKFVVILGDSVHRAVYKDLVLLLQKDRLLTPGQLRA---RGELNFE-- 57

Query: 434 KDPSQSVRITSIFNGHWNDTLNYQGLDSLKDEGFRNLVKKYF-----------------S 476
               Q   +     GH ++ LNY+ +   + +   +LV+ YF                 S
Sbjct: 58  ----QDELVDGGQRGHMHNGLNYREVREFRSD--HHLVRFYFLTRVYSDYLQTILKELQS 111

Query: 477 EDTVPDTVIMNSGLHDGVHFSNIRAFIKSANSAASFWKEVMESIRRRGLVVPQ--IFYRT 534
            +  PD VIMNS L D   +          NS  S+ + +    +  G V+P+  +    
Sbjct: 112 GEHAPDLVIMNSCLWDISRY--------GPNSWRSYLENLENLFQCLGQVLPESCLLVWN 163

Query: 535 TVATGGYARSLAFNPSKMEAFNGVLLD----KLRQAGVVSGVIDNFD-MTFPWHF----D 585
           T    G   +  F P K+       L     K            NFD +   +HF    +
Sbjct: 164 TAMPVGEEVTGGFLPPKLRRQKATFLKNEVVKANFHSATEARKHNFDVLDLHFHFRHARE 223

Query: 586 NRCNDGVHYGRAPLKMKWRDGQIGHQYFVDLMLVHV 621
           N   DGVH+          +G++ H+    L+L HV
Sbjct: 224 NLHWDGVHW----------NGRV-HRCLSQLLLAHV 248


>sp|Q49689|Y593_MYCLE UPF0051 protein ML0593 OS=Mycobacterium leprae (strain TN)
           GN=ML0593 PE=3 SV=2
          Length = 869

 Score = 33.1 bits (74), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 492 DGVHFSNIRAFIKSANSAASFWKEVMESIR 521
           DG+ F NI+ F++S    A+ W E+ E IR
Sbjct: 88  DGIDFDNIKYFVRSTEKQAASWDELPEDIR 117


>sp|Q27713|DRTS_PLABA Bifunctional dihydrofolate reductase-thymidylate synthase
           OS=Plasmodium berghei (strain Anka) PE=3 SV=1
          Length = 587

 Score = 33.1 bits (74), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 55/109 (50%), Gaps = 17/109 (15%)

Query: 26  GVLTALVF-----MGVVVVWSIDGCTIDNFV--QVWNLKQDRFVAVRANATV-----DAA 73
           G L+ +++     +G+ V ++I   +I  ++  QV NL+   F+ V  NA V     ++ 
Sbjct: 480 GKLSCIMYQRSCDLGLGVPFNIASYSIFTYMIAQVCNLQAAEFIHVLGNAHVYNNHIESL 539

Query: 74  QIQLNLTVNTSSVQDLPTQREKPQLNDVKNFTSNDSPSLNLTHLNQTSV 122
           +IQLN T         PT +  P + ++++FT +D    N  H ++ ++
Sbjct: 540 KIQLNRTP-----YPFPTLKLNPDIKNIEDFTISDFTVQNYVHHDKINM 583


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.136    0.432 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 244,588,992
Number of Sequences: 539616
Number of extensions: 10640260
Number of successful extensions: 24458
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 24437
Number of HSP's gapped (non-prelim): 42
length of query: 630
length of database: 191,569,459
effective HSP length: 124
effective length of query: 506
effective length of database: 124,657,075
effective search space: 63076479950
effective search space used: 63076479950
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)