BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035965
(348 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 276 bits (705), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 144/341 (42%), Positives = 210/341 (61%), Gaps = 22/341 (6%)
Query: 10 RSKTFCVTGANGYIGSWLVKTLLERGYIVHATVRDPGKLQ----IFSKWTRSDRLRLFQA 65
+S+T CVTGA+G+IGSWLV LLERGY V ATVRDP ++ + L L++A
Sbjct: 4 QSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKA 63
Query: 66 DLQVEGSFDKAVMGCDGVFHVAASMEFDINVKDNIETYVQSTVINPAIQSTLNLLKACLK 125
DL EGSFD+A+ GC GVFHVA M+F+ +N VI P I+ L ++K+C
Sbjct: 64 DLADEGSFDEAIKGCTGVFHVATPMDFESKDPEN-------EVIKPTIEGMLGIMKSCAA 116
Query: 126 SESVKRVVLTSSVSTITAKDSSGEWRPVVDESCQTPIHHVWNKKASGWVYVLSKLLSEET 185
+++V+R+V TSS T+ ++ PV DESC + + KK + W+Y +SK L+E+
Sbjct: 117 AKTVRRLVFTSSAGTVNIQEHQ---LPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQA 173
Query: 186 AFKFANENKIDLVSVITTTVAGPFLTSSVPSSIQVLLSPITGDSKFFSILSSVSNRMGSI 245
A+K+A EN ID +++I T V GPF+ SS+P S+ LSPITG+ +SI+ R G
Sbjct: 174 AWKYAKENNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSII-----RQGQ- 227
Query: 246 ALVHIEDICNAHIFLMENDRAQGQYICCVKSCPISEFIDHLKLEYPSSKMQT-FEGENQS 304
VH++D+CNAHI+L EN +A+G+YIC C I + L+ +YP + T F+G +++
Sbjct: 228 -FVHLDDLCNAHIYLFENPKAEGRYICSSHDCIILDLAKMLREKYPEYNIPTEFKGVDEN 286
Query: 305 SVPSVISSEKLKDLGFNYKHGIEDIICQTIASCVDCGFLPP 345
SS+KL DLGF +K+ +ED+ + +C G LPP
Sbjct: 287 LKSVCFSSKKLTDLGFEFKYSLEDMFTGAVDTCRAKGLLPP 327
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 242 bits (618), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 135/326 (41%), Positives = 193/326 (59%), Gaps = 11/326 (3%)
Query: 12 KTFCVTGANGYIGSWLVKTLLERGYIVHATVRDPG---KLQIFSKWTRSDRLRLFQADLQ 68
KT CV G G++ S LVK LL++GY V+ TVRDP K+ + L++F+ADL
Sbjct: 10 KTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGDLKIFRADLT 69
Query: 69 VEGSFDKAVMGCDGVFHVAASMEFDINVKDNIETYVQSTVINPAIQSTLNLLKACLKSES 128
E SF+ + GCD VFHVA + F +N +I PAIQ +N++KAC +++S
Sbjct: 70 DELSFEAPIAGCDFVFHVATPVHFASEDPEN-------DMIKPAIQGVVNVMKACTRAKS 122
Query: 129 VKRVVLTSSVSTITAKDSSGEWRPVVDESCQTPIHHVWNKKASGWVYVLSKLLSEETAFK 188
VKRV+LTSS + +T G VVDE T I + + K W Y SK L+E+ A+K
Sbjct: 123 VKRVILTSSAAAVTINQLDGTGL-VVDEKNWTDIEFLTSAKPPTWGYPASKTLAEKAAWK 181
Query: 189 FANENKIDLVSVITTTVAGPFLTSSVPSSIQVLLSPITGDSKFFSILSSVSNRMGSIALV 248
FA EN IDL++VI T +AG LTS VPSSI + +S ITG+ + + + GS+++
Sbjct: 182 FAEENNIDLITVIPTLMAGSSLTSDVPSSIGLAMSLITGNEFLINGMKGMQMLSGSVSIA 241
Query: 249 HIEDICNAHIFLMENDRAQGQYICCVKSCPISEFIDHLKLEYPSSKMQTFEGENQSSVPS 308
H+ED+C AHIF+ E + A G+YICC + + E L YP K+ T G+
Sbjct: 242 HVEDVCRAHIFVAEKESASGRYICCAANTSVPELAKFLSKRYPQYKVPTDFGDFPPKSKL 301
Query: 309 VISSEKLKDLGFNYKHGIEDIICQTI 334
+ISSEKL GF++K+GIE+I +++
Sbjct: 302 IISSEKLVKEGFSFKYGIEEIYDESV 327
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 187 bits (475), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 111/336 (33%), Positives = 184/336 (54%), Gaps = 25/336 (7%)
Query: 15 CVTGANGYIGSWLVKTLLERGYIVHATVR-DPGKLQIFSKWTR----SDRLRLFQADLQV 69
CVTG G++GSW++K+LLE GY V+ T+R DP + + S T S++L F ADL
Sbjct: 5 CVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLSN 64
Query: 70 EGSFDKAVMGCDGVFHVAASMEFDINVKDNIETYVQSTVINPAIQSTLNLLKACLKSESV 129
SF A+ GC G+FH A+ ++F ++ + I V + L +LKAC+ S++V
Sbjct: 65 PDSFAAAIEGCVGIFHTASPIDFAVSEPEEI-------VTKRTVDGALGILKACVNSKTV 117
Query: 130 KRVVLTSSVSTITAKDSSGEWRPVVDESCQTPIHHVWNKKASGWVYVLSKLLSEETAFKF 189
KR + TSS S ++ +G+ + V+DES + + + + K GW Y +SK L+E+ +F
Sbjct: 118 KRFIYTSSGSAVSF---NGKDKDVLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEF 174
Query: 190 ANENKIDLVSVITTTVAGPFLTSSVPSSIQVLLSPITGDSKFFSILSSVSNRMGSIALVH 249
+N ID+V++I + G F+ +P SI+ L + G + + +VH
Sbjct: 175 GEQNGIDVVTLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQIGVT--------RFHMVH 226
Query: 250 IEDICNAHIFLMENDRAQGQYICCVKSCPISEFIDHLKLEYPSSKMQTFE--GENQSSVP 307
++D+ AHI+L+EN G+Y C PI E L +YP ++ T + E + +
Sbjct: 227 VDDVARAHIYLLENSVPGGRYNCSPFIVPIEEMSQLLSAKYPEYQILTVDELKEIKGARL 286
Query: 308 SVISSEKLKDLGFNYKHGIEDIICQTIASCVDCGFL 343
++++KL D GF++K+ IED+ I C + G+L
Sbjct: 287 PDLNTKKLVDAGFDFKYTIEDMFDDAIQCCKEKGYL 322
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 96/193 (49%), Gaps = 25/193 (12%)
Query: 15 CVTGANGYIGSWLVKTLLERGYIVHATVRDPGKLQIFSK-WTRSDRLRLFQA---DLQVE 70
VTGANG++ S +V+ LLE GY V T R KL K W R A D+ +
Sbjct: 15 LVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQ 74
Query: 71 GSFDKAVMGCDGVFHVAASMEFDINVKDNIETYVQSTVINPAIQSTLNLLKACLKSESVK 130
G++D+ + G GV H+A+ + F N D V+ PAI TLN L+A + SVK
Sbjct: 75 GAYDEVIKGAAGVAHIASVVSFS-NKYDE--------VVTPAIGGTLNALRAAAATPSVK 125
Query: 131 RVVLTSS-VSTITAKDS-------SGEWR-PVVDESCQTPIHHVWNKKASGWVYVLSKLL 181
R VLTSS VS + K + W +D++ P + + S WVY SK
Sbjct: 126 RFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPES---DPQKSLWVYAASKTE 182
Query: 182 SEETAFKFANENK 194
+E A+KF +ENK
Sbjct: 183 AELAAWKFMDENK 195
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 95/193 (49%), Gaps = 25/193 (12%)
Query: 15 CVTGANGYIGSWLVKTLLERGYIVHATVRDPGKLQIFSK-WTRSDRLRLFQA---DLQVE 70
VTGANG++ S +V+ LLE GY V T R KL K W R A D +
Sbjct: 15 LVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDXLKQ 74
Query: 71 GSFDKAVMGCDGVFHVAASMEFDINVKDNIETYVQSTVINPAIQSTLNLLKACLKSESVK 130
G++D+ + G GV H+A+ + F N D V+ PAI TLN L+A + SVK
Sbjct: 75 GAYDEVIKGAAGVAHIASVVSFS-NKYDE--------VVTPAIGGTLNALRAAAATPSVK 125
Query: 131 RVVLTSS-VSTITAKDS-------SGEWR-PVVDESCQTPIHHVWNKKASGWVYVLSKLL 181
R VLTSS VS + K + W +D++ P + + S WVY SK
Sbjct: 126 RFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPES---DPQKSLWVYAASKTE 182
Query: 182 SEETAFKFANENK 194
+E A+KF +ENK
Sbjct: 183 AELAAWKFXDENK 195
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 56/145 (38%), Gaps = 16/145 (11%)
Query: 14 FCVTGANGYIGSWLVKTLLERGY--------IVHATVRDPGKLQIFSKWTRSDRLRLFQA 65
VTG G+IGS V+ LL Y IV ++ G + RLR
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHG 62
Query: 66 DLQVEGSFDKAVMGCDGVFHVAASMEFDINVKDNIETYVQSTVINPAIQSTLNLLKACLK 125
D++ G + + G D + H AA D ++ S +Q T LL+ C
Sbjct: 63 DIRDAGLLARELRGVDAIVHFAAESHVDRSIAG------ASVFTETNVQGTQTLLQ-CAV 115
Query: 126 SESVKRVVLTSSVSTITAKDSSGEW 150
V RVV S+ + D SG W
Sbjct: 116 DAGVGRVVHVSTNQVYGSID-SGSW 139
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 56/145 (38%), Gaps = 16/145 (11%)
Query: 14 FCVTGANGYIGSWLVKTLLERGY--------IVHATVRDPGKLQIFSKWTRSDRLRLFQA 65
VTG G+IGS V+ LL Y IV ++ G + RLR
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHG 62
Query: 66 DLQVEGSFDKAVMGCDGVFHVAASMEFDINVKDNIETYVQSTVINPAIQSTLNLLKACLK 125
D++ G + + G D + H AA D ++ S +Q T LL+ C
Sbjct: 63 DIRDAGLLARELRGVDAIVHFAAESHVDRSIAG------ASVFTETNVQGTQTLLQ-CAV 115
Query: 126 SESVKRVVLTSSVSTITAKDSSGEW 150
V RVV S+ + D SG W
Sbjct: 116 DAGVGRVVHVSTDEVYGSID-SGSW 139
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 13/123 (10%)
Query: 15 CVTGANGYIGSWLVKTLLERGYIVHATVRDPGKLQIFSKWTRSDRLRLFQADLQVEGSFD 74
VTG G+IGS +V L E IV G + ++ RL +ADL + D
Sbjct: 5 VVTGGAGFIGSHVVDKLSESNEIVVIDNLSSGNEEFVNEAA-----RLVKADLAADDIKD 59
Query: 75 KAVMGCDGVFHVAASMEFDINVKDNIETYVQSTVINPAIQSTLNLLKACLKSESVKRVVL 134
+ G + V+H+AA+ + I ++ E Y + + +T LL+A K+ V R+V
Sbjct: 60 -YLKGAEEVWHIAANPDVRIGAENPDEIYRNNVL------ATYRLLEAMRKA-GVSRIVF 111
Query: 135 TSS 137
TS+
Sbjct: 112 TST 114
>pdb|3DHN|A Chain A, Crystal Structure Of The Putative Epimerase Q89z24_bactn
From Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Consortium Target Btr310
Length = 227
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 8/73 (10%)
Query: 10 RSKTFCVTGANGYIGSWLVKTLLERGYIVHATVRDPGKLQIFSKWTRSDRLRLFQADLQV 69
+ K + GA+G++GS L+ L RG+ V A VR P K++I ++ L++ +AD+
Sbjct: 3 KVKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKI-----ENEHLKVKKADVS- 56
Query: 70 EGSFDKAVMGCDG 82
S D+ C G
Sbjct: 57 --SLDEVCEVCKG 67
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 80/203 (39%), Gaps = 37/203 (18%)
Query: 15 CVTGANGYIGSWLVKTLLERGY---IVHATVRDPGKLQIFSKWTRSDRLRLFQADLQVEG 71
VTG G+IGS LV L+E GY +V RD G L DL+ +
Sbjct: 4 VVTGGAGFIGSHLVDKLVELGYEVVVVDIVQRDTG-----------GSAELHVRDLK-DY 51
Query: 72 SFDKAVMGCDGVFHVAASMEFDINVKDNIETYVQSTVINPAIQSTLNLLKACLKSESVKR 131
S+ + G D VFH AA+ E ++ + I + N + +T N+L+ + V+
Sbjct: 52 SWGAGIKG-DVVFHFAANPEVRLSTTEPIVHF------NENVVATFNVLEWA-RQTGVRT 103
Query: 132 VVLTSSVSTITAKDSSGEWRPVVDESCQTPIHHVWNKKASGWVYVLSKLLSEETAFKFAN 191
VV SS + D P +E PI VY +K E +A
Sbjct: 104 VVFASSSTVYGDADVI----PTPEEEPYKPIS----------VYGAAKAAGEVMCATYAR 149
Query: 192 ENKIDLVSVITTTVAGPFLTSSV 214
+ ++V V GP L V
Sbjct: 150 LFGVRCLAVRYANVVGPRLRHGV 172
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 81/201 (40%), Gaps = 29/201 (14%)
Query: 15 CVTGANGYIGSWLVKTLLERGY-IVHATVRDPGKLQIFSKWTRSDRLRLFQADLQVEGSF 73
VTG G+IGS LV L+E GY +V G+ + + L DL+ + S+
Sbjct: 4 VVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFVNP-----SAELHVRDLK-DYSW 57
Query: 74 DKAVMGCDGVFHVAASMEFDINVKDNIETYVQSTVINPAIQSTLNLLKACLKSESVKRVV 133
+ G D VFH AA+ E ++ + I + N + +T N+L+ + V+ VV
Sbjct: 58 GAGIKG-DVVFHFAANPEVRLSTTEPIVHF------NENVVATFNVLEWA-RQTGVRTVV 109
Query: 134 LTSSVSTITAKDSSGEWRPVVDESCQTPIHHVWNKKASGWVYVLSKLLSEETAFKFANEN 193
SS + D P +E PI VY +K E +A
Sbjct: 110 FASSSTVYGDADVI----PTPEEEPYKPIS----------VYGAAKAAGEVMCATYARLF 155
Query: 194 KIDLVSVITTTVAGPFLTSSV 214
+ ++V V GP L V
Sbjct: 156 GVRCLAVRYANVVGPRLRHGV 176
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site
Length = 379
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 79/209 (37%), Gaps = 43/209 (20%)
Query: 16 VTGANGYIGSWLVKTLLERGYIVHATVRDPGKLQIFSKWTRSDRL-------RLFQADLQ 68
+TGA G+I S + + L G+ V I S W +++ + DL+
Sbjct: 34 ITGAGGFIASHIARRLKHEGHYV-----------IASDWKKNEHMTEDMFCDEFHLVDLR 82
Query: 69 VEGSFDKAVMGCDGVFHVAASMEFDINVKDNIETYVQSTVINPAIQSTLNLLKACLKSES 128
V + K G D VF++AA M ++ N S ++ + N+++A +
Sbjct: 83 VMENCLKVTEGVDHVFNLAADMGGMGFIQSN-----HSVIMYNNTMISFNMIEAA-RING 136
Query: 129 VKRVVLTSSVSTITAKDSSGEWRPVVDESCQTPIHHVWNKKASGW------VYVLSKLLS 182
+KR SS + E Q +V K++ W Y L KL +
Sbjct: 137 IKRFFYASSAC-------------IYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLAT 183
Query: 183 EETAFKFANENKIDLVSVITTTVAGPFLT 211
EE + + I+ + GPF T
Sbjct: 184 EELCKHYNKDFGIECRIGRFHNIYGPFGT 212
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site
Length = 379
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 79/209 (37%), Gaps = 43/209 (20%)
Query: 16 VTGANGYIGSWLVKTLLERGYIVHATVRDPGKLQIFSKWTRSDRL-------RLFQADLQ 68
+TGA G+I S + + L G+ V I S W +++ + DL+
Sbjct: 34 ITGAGGFIASHIARRLKHEGHYV-----------IASDWKKNEHMTEDMFCDEFHLVDLR 82
Query: 69 VEGSFDKAVMGCDGVFHVAASMEFDINVKDNIETYVQSTVINPAIQSTLNLLKACLKSES 128
V + K G D VF++AA M ++ N S ++ + N+++A +
Sbjct: 83 VMENCLKVTEGVDHVFNLAADMGGMGFIQSN-----HSVIMYNNTMISFNMIEAA-RING 136
Query: 129 VKRVVLTSSVSTITAKDSSGEWRPVVDESCQTPIHHVWNKKASGW------VYVLSKLLS 182
+KR SS + E Q +V K++ W Y L KL +
Sbjct: 137 IKRFFYASSAC-------------IYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLAT 183
Query: 183 EETAFKFANENKIDLVSVITTTVAGPFLT 211
EE + + I+ + GPF T
Sbjct: 184 EELCKHYNKDFGIECRIGRFHNIYGPFGT 212
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 34.7 bits (78), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 45/121 (37%), Gaps = 13/121 (10%)
Query: 12 KTFCVTGANGYIGSWLVKTLLERGYIVHATVRDPGKLQIFSKWTR-----SDRLRLFQAD 66
K VTG G+IGS V + VH TV D KL DR+ L D
Sbjct: 5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLD--KLTYAGNKANLEAILGDRVELVVGD 62
Query: 67 LQVEGSFDKAVMGCDGVFHVAASMEFDINVKDNIETYVQSTVINPAIQSTLNLLKACLKS 126
+ DK D + H AA D ++ D S I+ T LL+A K
Sbjct: 63 IADAELVDKLAAKADAIVHYAAESHNDNSLND------PSPFIHTNFIGTYTLLEAARKY 116
Query: 127 E 127
+
Sbjct: 117 D 117
>pdb|1DB3|A Chain A, E.Coli Gdp-Mannose 4,6-Dehydratase
Length = 372
Score = 34.3 bits (77), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 11 SKTFCVTGANGYIGSWLVKTLLERGYIVHATVR 43
SK +TG G GS+L + LLE+GY VH R
Sbjct: 1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKR 33
>pdb|1RPN|A Chain A, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|B Chain B, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|C Chain C, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|D Chain D, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
Length = 335
Score = 34.3 bits (77), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 11 SKTFCVTGANGYIGSWLVKTLLERGYIVHATV 42
+++ VTG G G++L K LLE+GY VH V
Sbjct: 14 TRSALVTGITGQDGAYLAKLLLEKGYRVHGLV 45
>pdb|2Z1M|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
Length = 345
Score = 34.3 bits (77), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 29/131 (22%)
Query: 11 SKTFCVTGANGYIGSWLVKTLLERGYIVHATVRDPGKLQIFSKWTRSDRLRLFQADLQVE 70
K +TG G G++L K LLE+GY V+ R G+ F+ W RL+ +L +E
Sbjct: 3 GKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGE---FASW----RLK----ELGIE 51
Query: 71 GSFDKAVMGCDGVFHVAASMEFDINVKDNIETYVQSTVINPAIQSTLNLLKACLKSESVK 130
D ++ D +EF N+ IE V N A QS + + S +
Sbjct: 52 N--DVKIIHMD-------LLEFS-NIIRTIEKVQPDEVYNLAAQSFVGV--------SFE 93
Query: 131 RVVLTSSVSTI 141
+ +LT+ V I
Sbjct: 94 QPILTAEVDAI 104
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 79/209 (37%), Gaps = 43/209 (20%)
Query: 16 VTGANGYIGSWLVKTLLERGYIVHATVRDPGKLQIFSKWTRSDRL-------RLFQADLQ 68
+TGA G+I S + + L G+ V I S W +++ + DL+
Sbjct: 34 ITGAGGFIASHIARRLKHEGHYV-----------IASDWKKNEHMTEDMFCDEFHLVDLR 82
Query: 69 VEGSFDKAVMGCDGVFHVAASMEFDINVKDNIETYVQSTVINPAIQSTLNLLKACLKSES 128
V + K G D VF++AA M ++ N S ++ + N+++A +
Sbjct: 83 VMENCLKVTEGVDHVFNLAADMGGMGFIQSN-----HSVIMYNNTMISFNMIEAA-RING 136
Query: 129 VKRVVLTSSVSTITAKDSSGEWRPVVDESCQTPIHHVWNKKASGW------VYVLSKLLS 182
+KR SS + E Q +V K++ W Y L +L +
Sbjct: 137 IKRFFYASSAC-------------IYPEFKQLETTNVSLKESDAWPAEPQDAYGLERLAT 183
Query: 183 EETAFKFANENKIDLVSVITTTVAGPFLT 211
EE + + I+ + GPF T
Sbjct: 184 EELCKHYNKDFGIECRIGRFHNIYGPFGT 212
>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
pdb|1WVG|B Chain B, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
Length = 359
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 15/134 (11%)
Query: 10 RSKTFCVTGANGYIGSWLVKTLLERGYIVHATVRD-PGKLQIFSKWTRSDRLRLFQADLQ 68
+ K VTG G+ GSWL L E G IV D P +F +D + D++
Sbjct: 8 QGKRVFVTGHTGFKGSWLSLWLTEMGAIVKGYALDAPTVPSLFEIVRLNDLMESHIGDIR 67
Query: 69 VEGSFDK-----AVMGCDGVFHVAASMEFDINVKDNIETYVQSTVINPAIQSTLNLLKAC 123
F+K A + VFH+AA ++ + I+TY + + T++LL+
Sbjct: 68 ---DFEKLRSSIAEFKPEIVFHMAAQPLVRLSYEQPIKTYSTN------VMGTVHLLETV 118
Query: 124 LKSESVKRVVLTSS 137
+ ++K VV +S
Sbjct: 119 KQVGNIKAVVNITS 132
>pdb|3RFX|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
Length = 267
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 49/130 (37%), Gaps = 18/130 (13%)
Query: 12 KTFCVTGANGYIGSWLVKTLLERGYIVHATVRDPGKLQIFSKWTRSDRLRLFQADLQVEG 71
K VTGA G +G + + L I+ P Q DL
Sbjct: 4 KRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLD-------PAGPNEECVQCDLADAN 56
Query: 72 SFDKAVMGCDGVFHVAASMEFDINVKDNIETYVQSTVINPAIQSTLNLLKACLKSESVKR 131
+ + V GCDG+ H+ I+V+ E +Q +I NL +A ++ R
Sbjct: 57 AVNAMVAGCDGIVHLGG-----ISVEKPFEQILQGNII-----GLYNLYEAA-RAHGQPR 105
Query: 132 VVLTSSVSTI 141
+V SS TI
Sbjct: 106 IVFASSNHTI 115
>pdb|1T2A|A Chain A, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|B Chain B, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|C Chain C, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|D Chain D, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
Length = 375
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 16 VTGANGYIGSWLVKTLLERGYIVHATVR 43
+TG G GS+L + LLE+GY VH VR
Sbjct: 29 ITGITGQDGSYLAEFLLEKGYEVHGIVR 56
>pdb|3RFT|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFV|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
Length = 267
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 49/130 (37%), Gaps = 18/130 (13%)
Query: 12 KTFCVTGANGYIGSWLVKTLLERGYIVHATVRDPGKLQIFSKWTRSDRLRLFQADLQVEG 71
K VTGA G +G + + L I+ P Q DL
Sbjct: 4 KRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLD-------PAGPNEECVQCDLADAN 56
Query: 72 SFDKAVMGCDGVFHVAASMEFDINVKDNIETYVQSTVINPAIQSTLNLLKACLKSESVKR 131
+ + V GCDG+ H+ I+V+ E +Q +I NL +A ++ R
Sbjct: 57 AVNAMVAGCDGIVHLGG-----ISVEKPFEQILQGNII-----GLYNLYEAA-RAHGQPR 105
Query: 132 VVLTSSVSTI 141
+V SS TI
Sbjct: 106 IVFASSNHTI 115
>pdb|2YGQ|A Chain A, Wif Domain-Epidermal Growth Factor (Egf)-Like Domains 1-3
Of Human Wnt Inhibitory Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 324
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 9 GRSKTFCVTGANGYIGSWLVKTLLERGYIVHATVRDPGKLQIFSKWTRSDRLRLFQADL 67
G+SK C + GY G K + E G H T +P K Q W + ++A L
Sbjct: 259 GKSKCKC---SKGYQGDLCSKPVCEPGCGAHGTCHEPNKCQCQEGWHGRHCNKRYEASL 314
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 79/209 (37%), Gaps = 43/209 (20%)
Query: 16 VTGANGYIGSWLVKTLLERGYIVHATVRDPGKLQIFSKWTRSDRL-------RLFQADLQ 68
+TGA G+I S + + L G+ V I S W +++ + DL+
Sbjct: 34 ITGAGGFIASHIARRLKHEGHYV-----------IASDWKKNEHMTEDMFCDEFHLVDLR 82
Query: 69 VEGSFDKAVMGCDGVFHVAASMEFDINVKDNIETYVQSTVINPAIQSTLNLLKACLKSES 128
V + K G D VF++AA M ++ N S ++ + N+++A +
Sbjct: 83 VMENCLKVTEGVDHVFNLAADMGGMGFIQSN-----HSVIMYNNTMISFNMIEAA-RING 136
Query: 129 VKRVVLTSSVSTITAKDSSGEWRPVVDESCQTPIHHVWNKKASGW------VYVLSKLLS 182
+KR SS + E Q +V K++ W + L KL +
Sbjct: 137 IKRFFYASSAC-------------IYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLAT 183
Query: 183 EETAFKFANENKIDLVSVITTTVAGPFLT 211
EE + + I+ + GPF T
Sbjct: 184 EELCKHYNKDFGIECRIGRFHNIYGPFGT 212
>pdb|2JH3|A Chain A, The Crystal Structure Of Dr2241 From Deinococcus
Radiodurans At 1.9 A Resolution Reveals A Multi-Domain
Protein With Structural Similarity To Chelatases But
Also With Two Additional Novel Domains
pdb|2JH3|B Chain B, The Crystal Structure Of Dr2241 From Deinococcus
Radiodurans At 1.9 A Resolution Reveals A Multi-Domain
Protein With Structural Similarity To Chelatases But
Also With Two Additional Novel Domains
pdb|2JH3|C Chain C, The Crystal Structure Of Dr2241 From Deinococcus
Radiodurans At 1.9 A Resolution Reveals A Multi-Domain
Protein With Structural Similarity To Chelatases But
Also With Two Additional Novel Domains
pdb|2JH3|D Chain D, The Crystal Structure Of Dr2241 From Deinococcus
Radiodurans At 1.9 A Resolution Reveals A Multi-Domain
Protein With Structural Similarity To Chelatases But
Also With Two Additional Novel Domains
Length = 474
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 13/66 (19%)
Query: 113 IQSTLNLLKACLKSESVKRVVLTSSVSTITAKDSSGEWRPVVDESCQTPIHHVWNKKASG 172
++ TL+ +A L ++ VV + +TA+D +G WRP+ W G
Sbjct: 308 LRHTLDEGRATL---DLQTVVTPEGLRDLTARDEAGRWRPI----------RTWRTLPRG 354
Query: 173 WVYVLS 178
W VLS
Sbjct: 355 WRAVLS 360
>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase
(decarboxylase) Domain, S433a Mutant
Length = 358
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 79/217 (36%), Gaps = 26/217 (11%)
Query: 1 MEKPEESTGRSKTFCVTGANGYIGSWLVKTLL-ERGYIVHATVRDPGKLQIFSKWTRSDR 59
M +P + R + G NG+IG+ L + LL E Y V+ D G I S++
Sbjct: 3 MSQPACTARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGL--DIGSDAI-SRFLNHPH 59
Query: 60 LRLFQADLQVEGSF-DKAVMGCDGVF---HVAASMEFDINVKDNIETYVQSTVINPAIQS 115
+ D+ + + + V CD V +A +E+ N V +
Sbjct: 60 FHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRN---------PLRVFELDFEE 110
Query: 116 TLNLLKACLKSESVKRVVLTSSVSTITAKDSSGEWRPVVDESCQTPIHHVWNKKASGWVY 175
L +++ C+K KR++ S+ DE I NK W+Y
Sbjct: 111 NLRIIRYCVKYR--KRIIFPSTAEVYGMCSDK-----YFDEDHSNLIVGPVNKPR--WIY 161
Query: 176 VLSKLLSEETAFKFANENKIDLVSVITTTVAGPFLTS 212
+SK L + + + + + GP L +
Sbjct: 162 SVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDN 198
>pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-N-Acetylgalactosamine
pdb|1SB9|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-Glucose
Length = 352
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 71/168 (42%), Gaps = 18/168 (10%)
Query: 2 EKPEESTGRSKTFCVTGANGYIGSWLVKTLLER-----GYIVHAT--VRDPGKLQIFSKW 54
E +E + K + +TG G+IGS L++TLL+ G AT R+ +++
Sbjct: 18 ELRKELPAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSE 77
Query: 55 TRSDRLRLFQADLQVEGSFDKAVMGCDGVFHVAASMEFDINVKDNIETYVQSTVINPAIQ 114
+ + Q D++ + A G D V H AA ++ D I + + I
Sbjct: 78 KQWSNFKFIQGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATN------ID 131
Query: 115 STLNLLKACLKSESVKRVVLTSSVSTITAKDSSGEWRPVVDESCQTPI 162
LN+L A + K T + S+ T D G P V+++ P+
Sbjct: 132 GFLNMLIA---ARDAKVQSFTYAASSSTYGDHPG--LPKVEDTIGKPL 174
>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619y Mutant
Length = 358
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 82/217 (37%), Gaps = 26/217 (11%)
Query: 1 MEKPEESTGRSKTFCVTGANGYIGSWLVKTLL-ERGYIVHATVRDPGKLQIFSKWTRSDR 59
M +P + R + G NG+IG+ L + LL E Y V+ D G I S++
Sbjct: 3 MSQPACTARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGL--DIGSDAI-SRFLNHPH 59
Query: 60 LRLFQADLQVEGSF-DKAVMGCDGVF---HVAASMEFDINVKDNIETYVQSTVINPAIQS 115
+ D+ + + + V CD V +A +E+ N V +
Sbjct: 60 FHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRN---------PLRVFELDFEE 110
Query: 116 TLNLLKACLKSESVKRVVLTSSVSTITAKDSSGEWRPVVDESCQTPIHHVWNKKASGWVY 175
L +++ C+K KR++ S+ S + S DE I NK W+Y
Sbjct: 111 NLRIIRYCVKYR--KRIIFPST-SEVYGMCSD----KYFDEDHSNLIVGPVNKPR--WIY 161
Query: 176 VLSKLLSEETAFKFANENKIDLVSVITTTVAGPFLTS 212
+SK L + + + + + GP L +
Sbjct: 162 SVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDN 198
>pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase)
Domain, R619m Mutant
Length = 358
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 83/217 (38%), Gaps = 26/217 (11%)
Query: 1 MEKPEESTGRSKTFCVTGANGYIGSWLVKTLL-ERGYIVHATVRDPGKLQIFSKWTRSDR 59
M +P + R + G NG+IG+ L + LL E Y V+ D G I S++
Sbjct: 3 MSQPACTARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGL--DIGSDAI-SRFLNHPH 59
Query: 60 LRLFQADLQVEGSF-DKAVMGCDGVF---HVAASMEFDINVKDNIETYVQSTVINPAIQS 115
+ D+ + + + V CD V +A +E+ N V +
Sbjct: 60 FHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRN---------PLRVFELDFEE 110
Query: 116 TLNLLKACLKSESVKRVVLTSSVSTITAKDSSGEWRPVVDESCQTPIHHVWNKKASGWVY 175
L +++ C+K KR++ S+ S + S + DE I NK W+Y
Sbjct: 111 NLRIIRYCVKYR--KRIIFPST-SEVYGMCSDKYF----DEDHSNLIVGPVNKPR--WIY 161
Query: 176 VLSKLLSEETAFKFANENKIDLVSVITTTVAGPFLTS 212
+SK L + + + + + GP L +
Sbjct: 162 SVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDN 198
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 13/92 (14%)
Query: 6 ESTGRSKTFCVTGANGYIGSWLVKTLLERGY-------IVHATVRDPGKLQIFSKWTRSD 58
+S SK VTG GYIGS V L+E GY + ++T +L++ +K
Sbjct: 6 QSESTSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTK----H 61
Query: 59 RLRLFQADLQVEGSFDKAV--MGCDGVFHVAA 88
+ ++ DL +K D V H A
Sbjct: 62 HIPFYEVDLCDRKGLEKVFKEYKIDSVIHFAG 93
>pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619e Mutant
Length = 358
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 82/217 (37%), Gaps = 26/217 (11%)
Query: 1 MEKPEESTGRSKTFCVTGANGYIGSWLVKTLL-ERGYIVHATVRDPGKLQIFSKWTRSDR 59
M +P + R + G NG+IG+ L + LL E Y V+ D G I S++
Sbjct: 3 MSQPACTARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGL--DIGSDAI-SRFLNHPH 59
Query: 60 LRLFQADLQVEGSF-DKAVMGCDGVF---HVAASMEFDINVKDNIETYVQSTVINPAIQS 115
+ D+ + + + V CD V +A +E+ N V +
Sbjct: 60 FHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRN---------PLRVFELDFEE 110
Query: 116 TLNLLKACLKSESVKRVVLTSSVSTITAKDSSGEWRPVVDESCQTPIHHVWNKKASGWVY 175
L +++ C+K KR++ S+ S + S DE I NK W+Y
Sbjct: 111 NLRIIRYCVKYR--KRIIFPST-SEVYGMCSD----KYFDEDHSNLIVGPVNKPR--WIY 161
Query: 176 VLSKLLSEETAFKFANENKIDLVSVITTTVAGPFLTS 212
+SK L + + + + + GP L +
Sbjct: 162 SVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDN 198
>pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase
Domain
Length = 358
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 82/217 (37%), Gaps = 26/217 (11%)
Query: 1 MEKPEESTGRSKTFCVTGANGYIGSWLVKTLL-ERGYIVHATVRDPGKLQIFSKWTRSDR 59
M +P + R + G NG+IG+ L + LL E Y V+ D G I S++
Sbjct: 3 MSQPACTARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGL--DIGSDAI-SRFLNHPH 59
Query: 60 LRLFQADLQVEGSF-DKAVMGCDGVF---HVAASMEFDINVKDNIETYVQSTVINPAIQS 115
+ D+ + + + V CD V +A +E+ N V +
Sbjct: 60 FHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRN---------PLRVFELDFEE 110
Query: 116 TLNLLKACLKSESVKRVVLTSSVSTITAKDSSGEWRPVVDESCQTPIHHVWNKKASGWVY 175
L +++ C+K KR++ S+ S + S DE I NK W+Y
Sbjct: 111 NLRIIRYCVKYR--KRIIFPST-SEVYGMCSD----KYFDEDHSNLIVGPVNKPR--WIY 161
Query: 176 VLSKLLSEETAFKFANENKIDLVSVITTTVAGPFLTS 212
+SK L + + + + + GP L +
Sbjct: 162 SVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDN 198
>pdb|1N7G|A Chain A, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|B Chain B, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|C Chain C, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|D Chain D, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7H|A Chain A, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
pdb|1N7H|B Chain B, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
Length = 381
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 12 KTFCVTGANGYIGSWLVKTLLERGYIVHATVR 43
K +TG G GS+L + LL +GY VH +R
Sbjct: 29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIR 60
>pdb|3RD5|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Paratuberculosis
Length = 291
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 12 KTFCVTGANGYIGSWLVKTLLERGYIVHATVRDPGKLQIFSKWTRSDRLRLFQADLQVEG 71
+T +TGAN +G+ + L RG V VRD K + ++ T + ++ + + DLQ
Sbjct: 17 RTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAAR-TMAGQVEVRELDLQDLS 75
Query: 72 S---FDKAVMGCDGVFHVAASM 90
S F V G D + + A M
Sbjct: 76 SVRRFADGVSGADVLINNAGIM 97
>pdb|1XG5|A Chain A, Structure Of Human Putative Dehydrogenase Mgc4172 In
Complex With Nadp
pdb|1XG5|B Chain B, Structure Of Human Putative Dehydrogenase Mgc4172 In
Complex With Nadp
pdb|1XG5|C Chain C, Structure Of Human Putative Dehydrogenase Mgc4172 In
Complex With Nadp
pdb|1XG5|D Chain D, Structure Of Human Putative Dehydrogenase Mgc4172 In
Complex With Nadp
Length = 279
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 1 MEKPEESTGRSKTFCVTGANGYIGSWLVKTLLERGYIVHATVRDPGKLQIFSKWTRS 57
M +P R + VTGA+G IG+ + + L+++G V R G ++ + +S
Sbjct: 22 MARPGMERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKS 78
>pdb|3H2S|A Chain A, Crystal Structure Of The Q03b84 Protein From
Lactobacillus Casei. Northeast Structural Genomics
Consortium Target Lcr19.
pdb|3H2S|B Chain B, Crystal Structure Of The Q03b84 Protein From
Lactobacillus Casei. Northeast Structural Genomics
Consortium Target Lcr19
Length = 224
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 14 FCVTGANGYIGSWLVKTLLERGYIVHATVRDPGK 47
V GA G GS +V RG+ V A VRDP K
Sbjct: 3 IAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQK 36
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 63/157 (40%), Gaps = 25/157 (15%)
Query: 12 KTFCVTGANGYIGSWLVKTLLERGYIVHATVRD---PGKLQIFSKWTRSDRLRLFQADLQ 68
K +TG G++GS L L+ G+ V TV D G+ + W + L D+
Sbjct: 6 KRILITGGAGFVGSHLTDKLMMDGHEV--TVVDNFFTGRKRNVEHWIGHENFELINHDV- 62
Query: 69 VEGSFDKAVMGCDGVFHVAASMEFDINVKDNIETYVQSTVINPAIQSTLNLLKACLKSES 128
+ + D ++H+A+ + + I+T +T+ TLN+L L
Sbjct: 63 ----VEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTI------GTLNML--GLAKRV 110
Query: 129 VKRVVLTSSVSTI-------TAKDSSGEWRPVVDESC 158
R++L S+ ++D G P+ +C
Sbjct: 111 GARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRAC 147
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 22/137 (16%)
Query: 16 VTGANGYIGSWLVKTLLERGYI------VHATVRDPGKL-----QIFSKWTRSDRLRLFQ 64
VTG GYIGS V LLE GY+ H R G L ++ RS + +
Sbjct: 7 VTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRS--VEFEE 64
Query: 65 ADLQVEGSFDKAVMGCD--GVFHVAASMEFDINVKDNIETYVQSTVINPAIQSTLNLLKA 122
D+ +G+ + V H A +V+ ++ Y +N + T+ LL+
Sbjct: 65 MDILDQGALQRLFKKYSFMAVIHFAGLKAMGESVQKPLDYY----RVN--LTGTIQLLE- 117
Query: 123 CLKSESVKRVVLTSSVS 139
+K+ VK +V +SS +
Sbjct: 118 IMKAHGVKNLVFSSSAT 134
>pdb|1QYC|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYC|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 308
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 54/124 (43%), Gaps = 21/124 (16%)
Query: 10 RSKTFCVTGANGYIGSWLVKTLLERGYIVHATVRDPGKLQIFSKWTRSDRLRLFQADLQ- 68
RS+ + GA GYIG + K L+ G+ VR+ S ++ L F+A
Sbjct: 4 RSRILLI-GATGYIGRHVAKASLDLGHPTFLLVRES---TASSNSEKAQLLESFKASGAN 59
Query: 69 -VEGSFDKAVMGCDGVFHVAASMEFDINVKDNIETYVQSTVINPAIQSTLNLLKACLKSE 127
V GS D D V A D+ V STV + I+S +N++KA +
Sbjct: 60 IVHGSID------DHASLVEAVKNVDV---------VISTVGSLQIESQVNIIKAIKEVG 104
Query: 128 SVKR 131
+VKR
Sbjct: 105 TVKR 108
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 6/39 (15%)
Query: 16 VTGANGYIGSWLVKTLLERGYI------VHATVRDPGKL 48
VTG GYIGS V LLE GY+ H R G L
Sbjct: 7 VTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSL 45
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 6/39 (15%)
Query: 16 VTGANGYIGSWLVKTLLERGYI------VHATVRDPGKL 48
VTG GYIGS V LLE GY+ H R G L
Sbjct: 7 VTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSL 45
>pdb|2HMA|A Chain A, The Crystal Structure Of Trna
(5-Methylaminomethyl-2-Thiouridylate)- Methyltransferase
Trmu From Streptococcus Pneumoniae
Length = 376
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 65 ADLQVEGSFDKAVMGCDGVFHVAASMEFDINVKDNIETYVQSTVINPAIQSTLNLLKACL 124
AD G + + DG H ++ N KD +TY S + +Q T L
Sbjct: 124 ADYVATGHYARVARDEDGTVHXLRGVD---NGKD--QTYFLSQLSQEQLQKTXFPLGHLE 178
Query: 125 KSESVKRVVLTSSVSTITAKDSSG 148
K E V+R+ + +ST KDS+G
Sbjct: 179 KPE-VRRLAEEAGLSTAKKKDSTG 201
>pdb|1XA0|A Chain A, Crystal Structure Of Mcsg Target Apc35536 From Bacillus
Stearothermophilus
pdb|1XA0|B Chain B, Crystal Structure Of Mcsg Target Apc35536 From Bacillus
Stearothermophilus
Length = 328
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 9/51 (17%)
Query: 15 CVTGANGYIGSWLVKTLLERGYIVHATVRDPGKLQIFSKWTRSDRLRLFQA 65
VTGA G +GS V L +RGY V A+ K D LR+ A
Sbjct: 154 LVTGATGGVGSLAVSXLAKRGYTVEAST---------GKAAEHDYLRVLGA 195
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 85/211 (40%), Gaps = 49/211 (23%)
Query: 15 CVTGANGYIGSWLVKTLLERG----YIV-------------HATVRDPGKLQIFSKWTRS 57
V G G++GS LVK LLE G ++V H VR FS+ + +
Sbjct: 36 MVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDHPAVR-------FSETSIT 88
Query: 58 DRLRLFQADLQVEGSFDKAVMGCDGVFHVAASMEFDINVKDNIETYVQSTVINPAIQSTL 117
D L A LQ E D VFH+A ++ D + + +T+ +TL
Sbjct: 89 DDALL--ASLQDE---------YDYVFHLATYHGNQSSIHDPLADHENNTL------TTL 131
Query: 118 NLLKACLKSESVKRVVLTSSVSTITAKDSSGEWRPVVDESCQTPIHHVWNKKASGWVYVL 177
L + + +K+VV +++ +I K D++ T + + + Y +
Sbjct: 132 KLYERLKHFKRLKKVVYSAAGCSIAEK--------TFDDAKATEETDIVSLHNNDSPYSM 183
Query: 178 SKLLSEETAFKFANENKIDLVSVITTTVAGP 208
SK+ E + + ++++ V V GP
Sbjct: 184 SKIFGEFYSVYYHKQHQLPTVRARFQNVYGP 214
>pdb|1RI1|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1RI2|A Chain A, Structure And Mechanism Of Mrna Cap (guanine N-7)
Methyltransferase
pdb|1RI3|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1RI4|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1RI5|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1Z3C|A Chain A, Encephalitozooan Cuniculi Mrna Cap (Guanine-N7)
Methyltransferasein Complexed With Azoadomet
pdb|2HV9|A Chain A, Encephalitozoon Cuniculi Mrna Cap (Guanine-N7)
Methyltransferase In Complex With Sinefungin
Length = 298
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 2 EKPEESTGRSKTFCVTGANGYIGSWLVKTLLERG 35
E+ ES RSKT + AN +I + L++ +RG
Sbjct: 32 ERGRESRQRSKTINIRNANNFIKACLIRLYTKRG 65
>pdb|1RKX|A Chain A, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|B Chain B, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|C Chain C, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|D Chain D, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
Length = 357
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 9/131 (6%)
Query: 10 RSKTFCVTGANGYIGSWLVKTLLERGYIVHA-TVRDPGKLQIFSKWTRSDRLRLFQADLQ 68
+ K VTG G+ G WL L G V ++ P +F +D ++ D++
Sbjct: 8 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIR 67
Query: 69 VEGSFDKAV--MGCDGVFHVAASMEFDINVKDNIETYVQSTVINPAIQSTLNLLKACLKS 126
+ +++ + VFH+AA ++ + +ETY + + T+ LL+A
Sbjct: 68 DQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTN------VMGTVYLLEAIRHV 121
Query: 127 ESVKRVVLTSS 137
VK VV +S
Sbjct: 122 GGVKAVVNITS 132
>pdb|1XQ1|A Chain A, X-Ray Structure Of Putative Tropinone Reducatse From
Arabidopsis Thaliana Gene At1g07440
pdb|2Q45|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Putative Tropinone Reductase From Arabidopsis Thaliana
Gene At1g07440
Length = 266
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 2 EKPEESTGRSKTFCVTGANGYIGSWLVKTLLERGYIVHATVRDPGKL-QIFSKWTR 56
E+ + + ++KT VTG IG +V+ G ++H R+ +L + SKW +
Sbjct: 5 EQSQRWSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQK 60
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 54/139 (38%), Gaps = 26/139 (18%)
Query: 11 SKTFCVTGANGYIGSWLVKTLLER------------GYIVHATVRDPGKLQIFSKWTRSD 58
S VTG G+IGS ++ +LE+ GY +P L+
Sbjct: 3 SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGY-----GSNPANLKDLED---DP 54
Query: 59 RLRLFQADLQVEGSFDKAVMGCDGVFHVAASMEFDINVKDNIETYVQSTVINPAIQSTLN 118
R + D+ + V DGV H+AA D ++ + E ++ S VI T
Sbjct: 55 RYTFVKGDVADYELVKELVRKVDGVVHLAAESHVDRSIS-SPEIFLHSNVI-----GTYT 108
Query: 119 LLKACLKSESVKRVVLTSS 137
LL++ + R V S+
Sbjct: 109 LLESIRRENPEVRFVHVST 127
>pdb|2EHD|A Chain A, Crystal Structure Analysis Of Oxidoreductase
pdb|2EHD|B Chain B, Crystal Structure Analysis Of Oxidoreductase
Length = 234
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 9 GRSKTFCVTGANGYIGSWLVKTLLERGYIVHATVRDPGKLQIFSKWTRSDRLRLFQADLQ 68
G +TGA+ IG + L +GY V RD +LQ + + D++
Sbjct: 3 GMKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALA--AELEGALPLPGDVR 60
Query: 69 VEGSFDKAVMGCDGVF 84
EG + +AV + F
Sbjct: 61 EEGDWARAVAAMEEAF 76
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 18/144 (12%)
Query: 16 VTGANGYIGSWLVKTLLERGYIVHATVRDPGKLQIFSKWTRSDRLRLFQADLQVEGSFDK 75
VTG G+IGS +V+ LL RG + V D L + + F+ DL+ + ++
Sbjct: 5 VTGGAGFIGSHIVEDLLARG--LEVAVLD--NLATGKRENVPKGVPFFRVDLRDKEGVER 60
Query: 76 AV--MGCDGVFHVAASMEFDINVKDNIETYVQSTVINPAIQSTLNLLKACLKSESVKRVV 133
A V H AA ++V+D + + + LNLL+AC + V+++V
Sbjct: 61 AFREFRPTHVSHQAAQASVKVSVEDPVLDF------EVNLLGGLNLLEAC-RQYGVEKLV 113
Query: 134 LTSSVSTITAKDSSGE-----WRP 152
S+ I + GE W P
Sbjct: 114 FASTGGAIYGEVPEGERAEETWPP 137
>pdb|1YI7|A Chain A, Beta-d-xylosidase (selenomethionine) Xynd From Clostridium
Acetobutylicum
pdb|1YI7|B Chain B, Beta-d-xylosidase (selenomethionine) Xynd From Clostridium
Acetobutylicum
pdb|1YI7|C Chain C, Beta-d-xylosidase (selenomethionine) Xynd From Clostridium
Acetobutylicum
pdb|1YI7|D Chain D, Beta-d-xylosidase (selenomethionine) Xynd From Clostridium
Acetobutylicum
Length = 542
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 281 EFIDHLKLEYPSSKMQ---TFEGENQSSVPSVISSEKLKD 317
E+I HLK+E Q +F+G N S VP++ S KL D
Sbjct: 459 EYI-HLKVEVRVETYQYSYSFDGINWSKVPAIFESRKLSD 497
>pdb|1Y7B|A Chain A, Beta-D-Xylosidase, A Family 43 Glycoside Hydrolase
pdb|1Y7B|B Chain B, Beta-D-Xylosidase, A Family 43 Glycoside Hydrolase
pdb|1Y7B|C Chain C, Beta-D-Xylosidase, A Family 43 Glycoside Hydrolase
pdb|1Y7B|D Chain D, Beta-D-Xylosidase, A Family 43 Glycoside Hydrolase
Length = 542
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 281 EFIDHLKLEYPSSKMQ---TFEGENQSSVPSVISSEKLKD 317
E+I HLK+E Q +F+G N S VP++ S KL D
Sbjct: 459 EYI-HLKVEVRVETYQYSYSFDGINWSKVPAIFESRKLSD 497
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,885,704
Number of Sequences: 62578
Number of extensions: 374888
Number of successful extensions: 1066
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 1014
Number of HSP's gapped (non-prelim): 62
length of query: 348
length of database: 14,973,337
effective HSP length: 100
effective length of query: 248
effective length of database: 8,715,537
effective search space: 2161453176
effective search space used: 2161453176
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)