BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035966
(285 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 120/264 (45%), Gaps = 32/264 (12%)
Query: 49 QVPLIDLEGFE--DCRRMEN-VNKIREASETWGFFQLINHGVPVSVMDEMLEGVRRFHEQ 105
QVP IDL+ E D + EN + ++++AS WG LINHG+P +M+ + + F
Sbjct: 45 QVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSL 104
Query: 106 PKEVKMEMYSRDCQKLVRFFSNGDLLV--TKGAADWRD-----AIAFDFRDGQLDPETFP 158
E K E Y+ D Q + G L G +W D A + RD + P+T P
Sbjct: 105 SVEEK-EKYAND-QATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKT-P 161
Query: 159 KICRKAVSEYMKYIIKLKTIXXXXXXXXXXXXXDYLAS-----------------MECME 201
+A SEY K + L T D L +C +
Sbjct: 162 SDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQ 221
Query: 202 TESLLTFGASKHSDPSFLTVLLQDHIGGLQVLHRNYWADVPFVQGALVINIGDFIQLITN 261
E L G H+D S LT +L + + GLQ+ + W V ++V++IGD +++++N
Sbjct: 222 PE--LALGVEAHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSN 279
Query: 262 HRFRSVEHRVLVGRVGPRVSVACF 285
+++S+ HR LV + R+S A F
Sbjct: 280 GKYKSILHRGLVNKEKVRISWAVF 303
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 120/264 (45%), Gaps = 32/264 (12%)
Query: 49 QVPLIDLEGFE--DCRRMEN-VNKIREASETWGFFQLINHGVPVSVMDEMLEGVRRFHEQ 105
QVP IDL+ E D + EN + ++++AS WG LINHG+P +M+ + + F
Sbjct: 46 QVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSL 105
Query: 106 PKEVKMEMYSRDCQKLVRFFSNGDLLV--TKGAADWRD-----AIAFDFRDGQLDPETFP 158
E K E Y+ D Q + G L G +W D A + RD + P+T P
Sbjct: 106 SVEEK-EKYAND-QATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKT-P 162
Query: 159 KICRKAVSEYMKYIIKLKTIXXXXXXXXXXXXXDYLAS-----------------MECME 201
+A SEY K + L T D L +C +
Sbjct: 163 SDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQ 222
Query: 202 TESLLTFGASKHSDPSFLTVLLQDHIGGLQVLHRNYWADVPFVQGALVINIGDFIQLITN 261
E L G H+D S LT +L + + GLQ+ + W V ++V++IGD +++++N
Sbjct: 223 PE--LALGVEAHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSN 280
Query: 262 HRFRSVEHRVLVGRVGPRVSVACF 285
+++S+ HR LV + R+S A F
Sbjct: 281 GKYKSILHRGLVNKEKVRISWAVF 304
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 118/264 (44%), Gaps = 32/264 (12%)
Query: 49 QVPLIDLEGFE--DCRRMEN-VNKIREASETWGFFQLINHGVPVSVMDEMLEGVRRFHEQ 105
QVP IDL+ E D + EN + ++++AS WG LINHG+P + + + + F
Sbjct: 46 QVPTIDLKNIESDDEKIRENCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSL 105
Query: 106 PKEVKMEMYSRDCQKLVRFFSNGDLLV--TKGAADWRD-----AIAFDFRDGQLDPETFP 158
E K E Y+ D Q + G L G +W D A + RD + P+T P
Sbjct: 106 SVEEK-EKYAND-QATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKT-P 162
Query: 159 KICRKAVSEYMKYIIKLKTIXXXXXXXXXXXXXDYLAS-----------------MECME 201
+A SEY K + L T D L +C +
Sbjct: 163 SDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQ 222
Query: 202 TESLLTFGASKHSDPSFLTVLLQDHIGGLQVLHRNYWADVPFVQGALVINIGDFIQLITN 261
E L G H+D S LT +L + + GLQ+ + W V ++V +IGD +++++N
Sbjct: 223 PE--LALGVEAHTDVSALTFILHNXVPGLQLFYEGKWVTAKCVPDSIVXHIGDTLEILSN 280
Query: 262 HRFRSVEHRVLVGRVGPRVSVACF 285
+++S+ HR LV + R+S A F
Sbjct: 281 GKYKSILHRGLVNKEKVRISWAVF 304
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 206 LTFGASKHSDPSFLTVLLQD-HIGGLQVLHRNYWADVPFVQGALVINIGDFIQLITNHRF 264
L G H+D + +L QD + GLQ+L W DVP + ++V+N+GD +++ITN ++
Sbjct: 170 LIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKY 229
Query: 265 RSVEHRVLVGRVGPRVSVACF 285
+SV HRV+ + G R S+A F
Sbjct: 230 KSVXHRVIAQKDGARXSLASF 250
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 51 PLIDLEGFEDCRRMENVNKIREASETWGFFQLINHGVPVSVMD 93
P+I L+ R I++A E WGFF+L+NHG+P V D
Sbjct: 5 PIISLDKVNGVERAATXEXIKDACENWGFFELVNHGIPREVXD 47
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 210 ASKHSDPSFLTVLLQDHIGGLQVLHRN-YWADVPFVQGALVINIGDFIQLITNHRFRSVE 268
A+ H D + +TVL + GLQV ++ W DVP G ++INIGD +Q ++ F S
Sbjct: 171 AAAHEDINLITVLPTANEPGLQVKAKDGSWLDVPSDFGNIIINIGDXLQEASDGYFPSTS 230
Query: 269 HRVL----VGRVGPRVSVACF 285
HRV+ + R+S+ F
Sbjct: 231 HRVINPEGTDKTKSRISLPLF 251
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 210 ASKHSDPSFLTVLLQDHIGGLQVLHRN-YWADVPFVQGALVINIGDFIQLITNHRFRSVE 268
A H D + +T+LL GGL+VL R+ W + G LVINIGD ++ +TN+ S
Sbjct: 188 AGAHGDINTITLLLGAEEGGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTV 247
Query: 269 HRVLVG----RVGPRVSVACF 285
HRV+ R PR S F
Sbjct: 248 HRVVNPPPERRGVPRYSTPFF 268
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 213 HSDPSFLTVLLQDHIGGLQVLHRNYWADVPFVQGALVINIGDFIQLITNHRFRSVEHRV 271
H D S +TVL Q ++ LQV + D+ +IN G ++ +TN+ +++ HRV
Sbjct: 214 HEDVSLITVLYQSNVQNLQVETAAGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRV 272
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Query: 50 VPLIDLE---GFEDCRRMENVNKIREASETWGFFQLINHGVPVSVMDEMLEGVRRFH--- 103
VP ID+ G + +M +I AS GFF +NHG+ V + + + FH
Sbjct: 9 VPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQ---RLSQKTKEFHMSI 65
Query: 104 --EQPKEVKMEMYSRDCQKLVR 123
E+ ++ + Y+++ Q VR
Sbjct: 66 TPEEKWDLAIRAYNKEHQDQVR 87
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 213 HSDPSFLTVLLQDHIGGLQVLHRNYWADVPFVQGALVINIGDFIQLITNHRFRSVEHRV 271
H D S +TVL Q ++ LQV + D+ +IN G ++ +TN+ +++ HRV
Sbjct: 214 HEDVSLITVLYQSNVQNLQVETAAGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRV 272
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Query: 50 VPLIDLE---GFEDCRRMENVNKIREASETWGFFQLINHGVPVSVMDEMLEGVRRFH--- 103
VP ID+ G + +M +I AS GFF +NHG+ V + + + FH
Sbjct: 9 VPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQ---RLSQKTKEFHMSI 65
Query: 104 --EQPKEVKMEMYSRDCQKLVR 123
E+ ++ + Y+++ Q VR
Sbjct: 66 TPEEKWDLAIRAYNKEHQDQVR 87
>pdb|3EG9|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF
MEMBRIN
pdb|3EGD|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND
BOUND To The Transport Signal Sequence Of Vesicular
Stomatitis Virus Glycoprotein
pdb|3EGX|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22B AND
Bound To The Transport Signal Sequence Of The Snare
Protein Bet1
Length = 764
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
Query: 18 KEFDDTKAGVKGLVDSGENLPKSSDIDDICL---QVPLIDLEGFEDCRRMENVNKIREAS 74
+F + AG+ L E LP+ S I+ + L Q+PLI L + C E++ ++E+
Sbjct: 92 NQFPPSYAGISELNQPAELLPQFSSIEYVVLRGPQMPLIFLYVVDTCMEDEDLQALKESM 151
Query: 75 E-------TWGFFQLINHGVPVSVMDEMLEGVRR 101
+ LI G V V + EG+ +
Sbjct: 152 QMSLSLLPPTALVGLITFGRMVQVHELGCEGISK 185
>pdb|3EFO|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF
SYNTAXIN 5
Length = 765
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
Query: 18 KEFDDTKAGVKGLVDSGENLPKSSDIDDICL---QVPLIDLEGFEDCRRMENVNKIREAS 74
+F + AG+ L E LP+ S I+ + L Q+PLI L + C E++ ++E+
Sbjct: 92 NQFPPSYAGISELNQPAELLPQFSSIEYVVLRGPQMPLIFLYVVDTCMEDEDLQALKESM 151
Query: 75 E-------TWGFFQLINHGVPVSVMDEMLEGVRR 101
+ LI G V V + EG+ +
Sbjct: 152 QMSLSLLPPTALVGLITFGRMVQVHELGCEGISK 185
>pdb|2NUP|A Chain A, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
pdb|2NUT|A Chain A, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
Length = 769
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
Query: 18 KEFDDTKAGVKGLVDSGENLPKSSDIDDICL---QVPLIDLEGFEDCRRMENVNKIREAS 74
+F + AG+ L E LP+ S I+ + L Q+PLI L + C E++ ++E+
Sbjct: 96 NQFPPSYAGISELNQPAELLPQFSSIEYVVLRGPQMPLIFLYVVDTCMEDEDLQALKESM 155
Query: 75 E-------TWGFFQLINHGVPVSVMDEMLEGVRR 101
+ LI G V V + EG+ +
Sbjct: 156 QMSLSLLPPTALVGLITFGRMVQVHELGCEGISK 189
>pdb|1Y7B|A Chain A, Beta-D-Xylosidase, A Family 43 Glycoside Hydrolase
pdb|1Y7B|B Chain B, Beta-D-Xylosidase, A Family 43 Glycoside Hydrolase
pdb|1Y7B|C Chain C, Beta-D-Xylosidase, A Family 43 Glycoside Hydrolase
pdb|1Y7B|D Chain D, Beta-D-Xylosidase, A Family 43 Glycoside Hydrolase
Length = 542
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 217 SFLTVLLQDH-------IGGLQVLHRNYWADVPFVQGALVINIGDFIQLITNHRFRSVEH 269
+F ++LQ++ IG +++++ D+ + +G + +IGD+ L T + EH
Sbjct: 154 NFYGIVLQEYSDKEKKLIGKAKIIYKG--TDIKYTEGPHIYHIGDYYYLFTAEGGTTYEH 211
Query: 270 RVLVGR 275
V R
Sbjct: 212 SETVAR 217
>pdb|1YI7|A Chain A, Beta-d-xylosidase (selenomethionine) Xynd From Clostridium
Acetobutylicum
pdb|1YI7|B Chain B, Beta-d-xylosidase (selenomethionine) Xynd From Clostridium
Acetobutylicum
pdb|1YI7|C Chain C, Beta-d-xylosidase (selenomethionine) Xynd From Clostridium
Acetobutylicum
pdb|1YI7|D Chain D, Beta-d-xylosidase (selenomethionine) Xynd From Clostridium
Acetobutylicum
Length = 542
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 217 SFLTVLLQDH-------IGGLQVLHRNYWADVPFVQGALVINIGDFIQLITNHRFRSVEH 269
+F ++LQ++ IG +++++ D+ + +G + +IGD+ L T + EH
Sbjct: 154 NFYGIVLQEYSDKEKKLIGKAKIIYKG--TDIKYTEGPHIYHIGDYYYLFTAEGGTTYEH 211
Query: 270 RVLVGR 275
V R
Sbjct: 212 SETVAR 217
>pdb|1VP4|A Chain A, Crystal Structure Of A Putative Aminotransferase (Tm1131)
From Thermotoga Maritima Msb8 At 1.82 A Resolution
pdb|1VP4|B Chain B, Crystal Structure Of A Putative Aminotransferase (Tm1131)
From Thermotoga Maritima Msb8 At 1.82 A Resolution
Length = 425
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 27/43 (62%), Gaps = 6/43 (13%)
Query: 132 VTKGAADWRDAIAFDFRDGQLDPETFPKICRKAVSEYMKYIIK 174
+ K AAD +DAI+F G DPETFP RK ++E K II+
Sbjct: 36 ILKFAAD-KDAISFG--GGVPDPETFP---RKELAEIAKEIIE 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,003,465
Number of Sequences: 62578
Number of extensions: 304951
Number of successful extensions: 677
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 662
Number of HSP's gapped (non-prelim): 22
length of query: 285
length of database: 14,973,337
effective HSP length: 98
effective length of query: 187
effective length of database: 8,840,693
effective search space: 1653209591
effective search space used: 1653209591
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)