BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035967
(381 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PXY|A Chain A, Crystal Structure Of The Actin-Crosslinking Core Of
Arabidopsis Fimbrin
pdb|1PXY|B Chain B, Crystal Structure Of The Actin-Crosslinking Core Of
Arabidopsis Fimbrin
Length = 506
Score = 543 bits (1400), Expect = e-155, Method: Compositional matrix adjust.
Identities = 269/405 (66%), Positives = 314/405 (77%), Gaps = 51/405 (12%)
Query: 1 KLINVAVPGTIDERAINTKRLLNPWERNENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHL 60
KLINVAVPGTIDERAINTKR+LNPWERNENHTLCLNSAKA+GC+VVNIGTQD EGR HL
Sbjct: 51 KLINVAVPGTIDERAINTKRVLNPWERNENHTLCLNSAKAVGCSVVNIGTQDLAEGRPHL 110
Query: 61 VLGVISQIIKIQLLADLNLKKTPQLLQLVDDSKDVEELMSLPPEKILLRWMNFHLKKAGY 120
VLG+ISQ+IKIQLLADLNLKKTPQL++L++DS DVEEL+ LPPEK+LL+WMNFHLKK GY
Sbjct: 111 VLGLISQLIKIQLLADLNLKKTPQLVELLEDSDDVEELLRLPPEKVLLKWMNFHLKKGGY 170
Query: 121 KKIVTNFSSDIKDGEAYANLLNVLAPEHSNPSTLAVKNPLQRAKLILEHADRMGCRRYLT 180
KK V+NFS+D+KD +AYA LLNVLAPEH +P+TL K+PL+RA+L+L HA+RM C+RYLT
Sbjct: 171 KKTVSNFSADLKDAQAYAFLLNVLAPEHCDPATLDAKDPLERAELVLSHAERMNCKRYLT 230
Query: 181 AKDIVEGSPNLNLAFVAHIFQHR------------------------------------- 203
A++IVEGS LNLAFVA IF R
Sbjct: 231 AEEIVEGSSTLNLAFVAQIFHERNGLNKDGKYAFAEMMTEDVETCRDERCYRLWINSLGI 290
Query: 204 --------------WVLLETLDKLSPGIVNWKIANKPPIKLPFRKVENCNQVVKIGKQLK 249
W+LLE LDK+SP VNWK A+KPPIK+PFRKVENCNQV+KIGKQLK
Sbjct: 291 DSYVNNVFEDVRNGWILLEVLDKVSPSSVNWKHASKPPIKMPFRKVENCNQVIKIGKQLK 350
Query: 250 FSLVNIAGNDIVQGNKKLILALLWQMMRYNVLQLLKNLRFHSHGKEITDADILQWANAKV 309
FSLVN+AGNDIVQGNKKLIL LLWQ+MR+++LQLLK+LR + GKE+TDADIL WAN KV
Sbjct: 351 FSLVNVAGNDIVQGNKKLILGLLWQLMRFHMLQLLKSLRSRTLGKEMTDADILSWANRKV 410
Query: 310 RISGSQSHMNSFKDKSLADGIFFLELLSAVQPRAVNWSLVTKGVT 354
R G + + SFKDKSL+ G+FFL LL AV+PR VNW+LVTKG T
Sbjct: 411 RTMGRKLQIESFKDKSLSSGLFFLNLLWAVEPRVVNWNLVTKGET 455
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 94/205 (45%), Gaps = 18/205 (8%)
Query: 1 KLINVAVPGTIDERAINTKRLLNPWERNENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHL 60
++++ P +++ + + + P+ + EN + K + ++VN+ D ++G + L
Sbjct: 309 EVLDKVSPSSVNWKHASKPPIKMPFRKVENCNQVIKIGKQLKFSLVNVAGNDIVQGNKKL 368
Query: 61 VLGVISQIIKIQLLADLNLKKTPQLLQLVDDSKDVEELMSLPPEKILLRWMNFHLKKAGY 120
+LG++ Q+++ +L L ++ L + + D+ +L W N ++ G
Sbjct: 369 ILGLLWQLMRFHMLQLLKSLRSRTLGKEMTDAD-------------ILSWANRKVRTMGR 415
Query: 121 KKIVTNF-SSDIKDGEAYANLLNVLAPE--HSNPSTLAVKNPLQR--AKLILEHADRMGC 175
K + +F + G + NLL + P + N T + +R A I+ A ++GC
Sbjct: 416 KLQIESFKDKSLSSGLFFLNLLWAVEPRVVNWNLVTKGETDDEKRLNATYIVSVARKLGC 475
Query: 176 RRYLTAKDIVEGSPNLNLAFVAHIF 200
+L +DIVE + + L A I
Sbjct: 476 SVFLLPEDIVEVNQKMILILTASIM 500
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 72/337 (21%), Positives = 132/337 (39%), Gaps = 80/337 (23%)
Query: 2 LINVAVPGTIDERAINTKRLLNPWERNENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHLV 61
L+NV P D ++ K +P ER E L L+ A+ + C + ++ +EG L
Sbjct: 190 LLNVLAPEHCDPATLDAK---DPLERAE---LVLSHAERMNCKRY-LTAEEIVEGSSTLN 242
Query: 62 LGVISQIIKIQLLADLNLKKTPQLLQLVDDSKDVEELMSLPPEKILLRWMNFHLKKAGYK 121
L ++QI + LN +++ ++DVE + E+ W+N G
Sbjct: 243 LAFVAQIFHER--NGLNKDGKYAFAEMM--TEDVE---TCRDERCYRLWIN----SLGID 291
Query: 122 KIVTNFSSDIKDGEAYANLLNVLAPEHSN---PSTLAVKNPLQRAKLILEHADRMGCRRY 178
V N D+++G +L+ ++P N S +K P ++ + ++G +
Sbjct: 292 SYVNNVFEDVRNGWILLEVLDKVSPSSVNWKHASKPPIKMPFRKVE-NCNQVIKIGKQLK 350
Query: 179 LT-----AKDIVEGSPNLNLAFVAHIFQ-HRWVLLETL---------------------- 210
+ DIV+G+ L L + + + H LL++L
Sbjct: 351 FSLVNVAGNDIVQGNKKLILGLLWQLMRFHMLQLLKSLRSRTLGKEMTDADILSWANRKV 410
Query: 211 -------------DK--------------LSPGIVNWKIANKPPIKLPFRKVENCNQVVK 243
DK + P +VNW + K + K N +V
Sbjct: 411 RTMGRKLQIESFKDKSLSSGLFFLNLLWAVEPRVVNWNLVTKG--ETDDEKRLNATYIVS 468
Query: 244 IGKQLKFSLVNIAGNDIVQGNKKLILALLWQMMRYNV 280
+ ++L S V + DIV+ N+K+IL L +M +++
Sbjct: 469 VARKLGCS-VFLLPEDIVEVNQKMILILTASIMYWSL 504
>pdb|1RT8|A Chain A, Crystal Structure Of The Actin-Crosslinking Core Of
Schizosaccharomyces Pombe Fimbrin
Length = 513
Score = 301 bits (771), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 164/427 (38%), Positives = 247/427 (57%), Gaps = 61/427 (14%)
Query: 1 KLINVAVPGTIDERAINTKRLLNPWERN---ENHTLCLNSAKAIG-CTVVNIGTQDFIEG 56
KLIN +VP TIDER +N +R P + EN+ + +NSAKA+G ++ NIG D +EG
Sbjct: 56 KLINDSVPDTIDERVLNKQRNNKPLDNFKCIENNNVVINSAKAMGGISITNIGAGDILEG 115
Query: 57 RRHLVLGVISQIIKIQLLADLNLKKTPQLLQLVDDSKDVEELMSLPPEKILLRWMNFHLK 116
R HL+LG++ QII+ LL +++ P+L +L+++ + +++ + LPPEKILLRW N+HLK
Sbjct: 116 REHLILGLVWQIIRRGLLGKIDITLHPELYRLLEEDETLDQFLRLPPEKILLRWFNYHLK 175
Query: 117 KAGYKKIVTNFSSDIKDGEAYANLLNVLAPEHSNPSTLAVKNPLQRAKLILEHADRMGCR 176
A + + V+NFS D+ DGE Y LLN LAPE + + L + LQRA+ +L++A+++ CR
Sbjct: 176 AANWPRTVSNFSKDVSDGENYTVLLNQLAPELCSRAPLQTTDVLQRAEQVLQNAEKLDCR 235
Query: 177 RYLTAKDIVEGSPNLNLAFVAHIFQHR------------------------------W-- 204
+YLT +V G+P LNLAFVAH+F W
Sbjct: 236 KYLTPTAMVAGNPKLNLAFVAHLFNTHPGLEPLNEEEKPEIEPFDAEGEREARVFTLWLN 295
Query: 205 -------------------VLLETLDKLSPGIVNWKIANKPPIK----LPFRKVENCNQV 241
+LL+ DK++P VNWK NK P + F+ VENCN
Sbjct: 296 SLDVTPSIHDFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPASGDEMMRFKAVENCNYA 355
Query: 242 VKIGKQLKFSLVNIAGNDIVQGNKKLILALLWQMMRYNVLQLLKNLRFHSHGKEITDADI 301
V +GK FSLV I G DI G++ L LAL+WQMMR N+ + L +L GK ++D+D+
Sbjct: 356 VDLGKNQGFSLVGIQGADITDGSRTLTLALVWQMMRMNITKTLHSL--SRGGKTLSDSDM 413
Query: 302 LQWANAKVRISGSQSHMNSFKDKSLADGIFFLELLSAVQPRAVNWSLVTKGVTGMFSSNH 361
+ WAN+ G S + SF+D S++ G+F L++L ++ V+++LVT G T + +
Sbjct: 414 VAWANSMAAKGGKGSQIRSFRDPSISTGVFVLDVLHGIKSEYVDYNLVTDGSTEELAIQN 473
Query: 362 TRCAVTL 368
R A+++
Sbjct: 474 ARLAISI 480
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 77/179 (43%), Gaps = 24/179 (13%)
Query: 29 ENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHLVLGVISQIIKIQLLADLNLKKTPQLLQL 88
EN ++ K G ++V I D +G R L L ++ Q+++ +N+ KT L L
Sbjct: 350 ENCNYAVDLGKNQGFSLVGIQGADITDGSRTLTLALVWQMMR------MNITKT--LHSL 401
Query: 89 VDDSKDVEELMSLPPEKILLRWMNFHLKKAGYKKIVTNF-SSDIKDGEAYANLLNVLAPE 147
K + + ++ W N K G + +F I G ++L+ + E
Sbjct: 402 SRGGKTLSD-------SDMVAWANSMAAKGGKGSQIRSFRDPSISTGVFVLDVLHGIKSE 454
Query: 148 H------SNPSTLAVKNPLQRAKLILEHADRMGCRRYLTAKDIVEGSPNLNLAFVAHIF 200
+ ++ ST + +Q A+L + A ++G ++ +DIV P L L F+ +
Sbjct: 455 YVDYNLVTDGSTEELA--IQNARLAISIARKLGAVIFILPEDIVAVRPRLVLHFIGSLM 511
>pdb|3BYH|B Chain B, Model Of Actin-Fimbrin Abd2 Complex
Length = 231
Score = 224 bits (572), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 111/164 (67%), Positives = 135/164 (82%), Gaps = 8/164 (4%)
Query: 194 AFVAHIFQ---HRWVLLETLDKLSPGIVNWKIANKPPIKLPFRKVENCNQVVKIGKQLKF 250
++V ++F+ + W+LLE LDK+SP VNWK A+KPPIK+PFRKVENCNQV+KIGKQLKF
Sbjct: 22 SYVNNVFEDVRNGWILLEVLDKVSPSSVNWKHASKPPIKMPFRKVENCNQVIKIGKQLKF 81
Query: 251 SLVNIAGNDIVQGNKKLILALLWQMMRYNVLQLLKNLRFHSHGKEITDADILQWANAKVR 310
SLVN+AGNDIVQGNKKLIL LLWQ+MR+++LQLLK+LR E+TDADIL WAN KVR
Sbjct: 82 SLVNVAGNDIVQGNKKLILGLLWQLMRFHMLQLLKSLR-----SEMTDADILSWANRKVR 136
Query: 311 ISGSQSHMNSFKDKSLADGIFFLELLSAVQPRAVNWSLVTKGVT 354
G + + SFKDKSL+ G+FFL LL AV+PR VNW+LVTKG T
Sbjct: 137 TMGRKLQIESFKDKSLSSGLFFLNLLWAVEPRVVNWNLVTKGET 180
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 89/198 (44%), Gaps = 23/198 (11%)
Query: 8 PGTIDERAINTKRLLNPWERNENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHLVLGVISQ 67
P +++ + + + P+ + EN + K + ++VN+ D ++G + L+LG++ Q
Sbjct: 46 PSSVNWKHASKPPIKMPFRKVENCNQVIKIGKQLKFSLVNVAGNDIVQGNKKLILGLLWQ 105
Query: 68 IIKIQLLADLNLKKTPQLLQLVDDSKDVEELMSLPPEKILLRWMNFHLKKAGYKKIVTNF 127
+++ +L QLL+ L S + +L W N ++ G K + +F
Sbjct: 106 LMRFHML---------QLLK---------SLRSEMTDADILSWANRKVRTMGRKLQIESF 147
Query: 128 -SSDIKDGEAYANLLNVLAPE--HSNPSTLAVKNPLQR--AKLILEHADRMGCRRYLTAK 182
+ G + NLL + P + N T + +R A I+ A ++GC +L +
Sbjct: 148 KDKSLSSGLFFLNLLWAVEPRVVNWNLVTKGETDDEKRLNATYIVSVARKLGCSVFLLPE 207
Query: 183 DIVEGSPNLNLAFVAHIF 200
DIVE + + L A I
Sbjct: 208 DIVEVNQKMILILTASIM 225
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 206 LLETLDKLSPGIVNWKIANKPPIKLPFRKVENCNQVVKIGKQLKFSLVNIAGNDIVQGNK 265
L L + P +VNW + K + K N +V + ++L S V + DIV+ N+
Sbjct: 158 FLNLLWAVEPRVVNWNLVTKG--ETDDEKRLNATYIVSVARKLGCS-VFLLPEDIVEVNQ 214
Query: 266 KLILALLWQMMRYNV 280
K+IL L +M +++
Sbjct: 215 KMILILTASIMYWSL 229
>pdb|1AOA|A Chain A, N-Terminal Actin-Crosslinking Domain From Human Fimbrin
Length = 275
Score = 202 bits (513), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 146/209 (69%), Gaps = 11/209 (5%)
Query: 1 KLINVAVPGTIDERAINTKRLLNPWERNENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHL 60
K+IN++VP TIDERAIN K+L P+ EN L LNSA AIGC VVNIG +D G+ HL
Sbjct: 68 KMINLSVPDTIDERAINKKKL-TPFIIQENLNLALNSASAIGCHVVNIGAEDLRAGKPHL 126
Query: 61 VLGVISQIIKIQLLADLNLKKTPQLLQLVDDSKDVEELMSLPPEKILLRWMNFHLKKAGY 120
VLG++ QIIKI L AD+ L + L L+ D + +EELM L PE++LLRW NFHL+ +G+
Sbjct: 127 VLGLLWQIIKIGLFADIELSRNEALAALLRDGETLEELMKLSPEELLLRWANFHLENSGW 186
Query: 121 KKIVTNFSSDIKDGEAYANLLNVLAPEHS---------NPSTLAVKNPLQRAKLILEHAD 171
+KI NFS+DIKD +AY +LLN +AP+ N S + L+RA+ +L+ AD
Sbjct: 187 QKI-NNFSADIKDSKAYFHLLNQIAPKGQKEGEPRIDINMSGFNETDDLKRAESMLQQAD 245
Query: 172 RMGCRRYLTAKDIVEGSPNLNLAFVAHIF 200
++GCR+++T D+V G+P LNLAFVA++F
Sbjct: 246 KLGCRQFVTPADVVSGNPKLNLAFVANLF 274
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 16/152 (10%)
Query: 205 VLLETLDKLSPGIVNWKIANKPPIKLPFRKVENCNQVVKIGKQLKFSLVNIAGNDIVQGN 264
VL + ++ P ++ + NK + PF EN N + + +VNI D+ G
Sbjct: 65 VLCKMINLSVPDTIDERAINKKKLT-PFIIQENLNLALNSASAIGCHVVNIGAEDLRAGK 123
Query: 265 KKLILALLWQMMRYNVLQLLKNLRFHSHGKEITDAD-------------ILQWANAKVRI 311
L+L LLWQ+++ + ++ R + + D + +L+WAN +
Sbjct: 124 PHLVLGLLWQIIKIGLFADIELSRNEALAALLRDGETLEELMKLSPEELLLRWANFHLEN 183
Query: 312 SGSQSHMNSFKDKSLADGIFFLELLSAVQPRA 343
SG Q +N+F + D + LL+ + P+
Sbjct: 184 SGWQK-INNFS-ADIKDSKAYFHLLNQIAPKG 213
>pdb|1QAG|A Chain A, Actin Binding Region Of The Dystrophin Homologue Utrophin
pdb|1QAG|B Chain B, Actin Binding Region Of The Dystrophin Homologue Utrophin
Length = 226
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Query: 237 NCNQVVKIGKQLKFSLVNIAGNDIVQGNKKLILALLWQ-MMRYNVLQLLKNLRFHSHGKE 295
N N+V+++ Q LVNI G DIV GN KL L LLW ++ + V + K++
Sbjct: 62 NVNRVLQVLHQNNVELVNIGGTDIVDGNHKLTLGLLWSIILHWQVKDVXKDVXSDLQQTN 121
Query: 296 ITDADILQWANAKVRISGSQSHMNSFKDKSLADGIFFLELLSAVQPRAVNWSLVTK 351
++ +L W R SQ ++ +F S DG+ F +L +P +W V K
Sbjct: 122 -SEKILLSWVRQTTR-PYSQVNVLNFT-TSWTDGLAFNAVLHRHKPDLFSWDKVVK 174
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 76/181 (41%), Gaps = 34/181 (18%)
Query: 24 PWERNENHTLCLNSAKAI-------GCTVVNIGTQDFIEGRRHLVLGVISQIIKIQLLAD 76
P ER LN+ + +VNIG D ++G L LG++ II
Sbjct: 49 PKERGSTRVHALNNVNRVLQVLHQNNVELVNIGGTDIVDGNHKLTLGLLWSII------- 101
Query: 77 LNLKKTPQLLQLVDDSKDV-EELMSLPPEKILLRWMNFHLKKAGYKKI-VTNFSSDIKDG 134
Q+ D KDV +L EKILL W+ + Y ++ V NF++ DG
Sbjct: 102 -------LHWQVKDVXKDVXSDLQQTNSEKILLSWVRQTTRP--YSQVNVLNFTTSWTDG 152
Query: 135 EAYANLLNVLAPEHSNPSTLAVKNPLQRAKLILEHA-----DRMGCRRYLTAKDIVEGSP 189
A+ +L+ P+ + + +P++R LEHA +G + L +D+ P
Sbjct: 153 LAFNAVLHRHKPDLFSWDKVVKXSPIER----LEHAFSKAQTYLGIEKLLDPEDVAVRLP 208
Query: 190 N 190
+
Sbjct: 209 D 209
>pdb|1WJO|A Chain A, Solution Structure Of The Forth Ch Domain From Human
Plastin 3 T-Isoform
Length = 124
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 291 SHGKEITDADILQWANAKVRISGSQSHMNSFKDKSLADGIFFLELLSAVQPRAVNWSLVT 350
S G D I+ W N + +G + + SFKDK+++ + ++L+ A+QP +N+ LV
Sbjct: 2 SSGSSGNDDIIVNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYDLVK 61
Query: 351 KG-VTGMFSSNHTRCAVTL 368
G +T N+ + AV++
Sbjct: 62 SGNLTEDDKHNNAKYAVSM 80
Score = 34.7 bits (78), Expect = 0.087, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Query: 104 EKILLRWMNFHLKKAGYKKIVTNFSSD-IKDGEAYANLLNVLAPEHSN-----PSTLAVK 157
+ I++ W+N L +AG + +F I A +L++ + P N L
Sbjct: 9 DDIIVNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYDLVKSGNLTED 68
Query: 158 NPLQRAKLILEHADRMGCRRYLTAKDIVEGSPNLNLAFVA 197
+ AK + A R+G R Y +D+VE P + + A
Sbjct: 69 DKHNNAKYAVSMARRIGARVYALPEDLVEVKPKMVMTVFA 108
>pdb|1DXX|A Chain A, N-Terminal Actin-Binding Domain Of Human Dystrophin
pdb|1DXX|B Chain B, N-Terminal Actin-Binding Domain Of Human Dystrophin
pdb|1DXX|C Chain C, N-Terminal Actin-Binding Domain Of Human Dystrophin
pdb|1DXX|D Chain D, N-Terminal Actin-Binding Domain Of Human Dystrophin
Length = 246
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 66/131 (50%), Gaps = 15/131 (11%)
Query: 229 KLPFRK-------VENCNQVVKIGKQLKFSLVNIAGNDIVQGNKKLILALLWQ-MMRYNV 280
KLP K + N N+ +++ + LVNI DIV GN KL L L+W ++ + V
Sbjct: 61 KLPKEKGSTRVHALNNVNKALRVLQNNNVDLVNIGSTDIVDGNHKLTLGLIWNIILHWQV 120
Query: 281 LQLLKNLRFHSHGKEITDAD--ILQWANAKVRISGSQSHMNSFKDKSLADGIFFLELLSA 338
++KN+ G + T+++ +L W R + Q ++ +F S +DG+ L+ +
Sbjct: 121 KNVMKNIM---AGLQQTNSEKILLSWVRQSTR-NYPQVNVINFT-TSWSDGLALNALIHS 175
Query: 339 VQPRAVNWSLV 349
+P +W+ V
Sbjct: 176 HRPDLFDWNSV 186
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 26/165 (15%)
Query: 45 VVNIGTQDFIEGRRHLVLGVISQIIKIQLLADLNLKKTPQLLQLVDDSKDVEELMSLPPE 104
+VNIG+ D ++G L LG+I II + ++ +K LQ + E
Sbjct: 91 LVNIGSTDIVDGNHKLTLGLIWNIILHWQVKNV-MKNIMAGLQQTN------------SE 137
Query: 105 KILLRWMNFHLKKAGYKKI-VTNFSSDIKDGEAYANLLNVLAPEHSNPSTLAVKNPLQRA 163
KILL W+ + Y ++ V NF++ DG A L++ P+ + +++ + Q A
Sbjct: 138 KILLSWVRQSTR--NYPQVNVINFTTSWSDGLALNALIHSHRPDLFDWNSVVSQ---QSA 192
Query: 164 KLILEHA-----DRMGCRRYLTAKDIVEGSPNLN--LAFVAHIFQ 201
LEHA ++G + L +D+ P+ L ++ +FQ
Sbjct: 193 TQRLEHAFNIARYQLGIEKLLDPEDVDTTYPDKKSILMYITSLFQ 237
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 63/133 (47%), Gaps = 12/133 (9%)
Query: 89 VDDSKDVEELMSLPPEKILLRWMNFHLKKAGYKKIVTNFSSDIKDGEAYANLLNVLA--- 145
V+DS + E++ +K +W+N K G K+ + N SD++DG +LL L
Sbjct: 7 VEDSYEREDVQ----KKTFTKWVNAQFSKFG-KQHIENLFSDLQDGRRLLDLLEGLTGQK 61
Query: 146 -PEHSNPSTLAVKNPLQRAKLILEHADRMGCRRYLTAKDIVEGSPNLNLAFVAHIFQHRW 204
P+ + + N + +A +L++ + + + DIV+G+ L L + +I H W
Sbjct: 62 LPKEKGSTRVHALNNVNKALRVLQNNNVDLVN--IGSTDIVDGNHKLTLGLIWNIILH-W 118
Query: 205 VLLETLDKLSPGI 217
+ + + G+
Sbjct: 119 QVKNVMKNIMAGL 131
>pdb|2D85|A Chain A, Solution Structure Of The Fourth Ch Domain From Human L-
Plastin
Length = 124
Score = 42.0 bits (97), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 291 SHGKEITDADILQWANAKVRISGSQSHMNSFKDKSLADGIFFLELLSAVQPRAVNWSLV 349
S G D I+ W N +R + S ++SFKD ++ + L+L+ A+QP ++N+ L+
Sbjct: 2 SSGSSGNDDIIVNWVNETLREAEKSSSISSFKDPKISTSLPVLDLIDAIQPGSINYDLL 60
Score = 34.3 bits (77), Expect = 0.12, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Query: 104 EKILLRWMNFHLKKAGYKKIVTNFSS-DIKDGEAYANLLNVLAPEHSNPSTLAVKN---- 158
+ I++ W+N L++A +++F I +L++ + P N L +N
Sbjct: 9 DDIIVNWVNETLREAEKSSSISSFKDPKISTSLPVLDLIDAIQPGSINYDLLKTENLNDD 68
Query: 159 -PLQRAKLILEHADRMGCRRYLTAKDIVEGSPNLNLAFVA 197
L AK + A ++G R Y +D+VE +P + + A
Sbjct: 69 EKLNNAKYAISMARKIGARVYALPEDLVEVNPKMVMTVFA 108
>pdb|2YRN|A Chain A, Solution Structure Of The Ch Domain From Human Neuron
Navigator 2
Length = 129
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 104 EKILLRWMNFHLKKAGYKKIVTNFSSDIKDGEAYANLLNVLAPEHSNPSTLAVKNPLQRA 163
++I W N +L K+G+K+++ + D+ DG A ++ V+A E KN Q
Sbjct: 20 KRIYTDWANHYLAKSGHKRLIRDLQQDVTDGVLLAQIIQVVANEKIEDINGCPKNRSQ-- 77
Query: 164 KLILEHADRMGCRRYLTAKDI 184
++E+ D C +L AK I
Sbjct: 78 --MIENID--ACLNFLAAKGI 94
>pdb|2R0O|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human
Alpha-Actinin-4 Mutant(K255e)
pdb|2R0O|B Chain B, Crystal Structure Of The Actin-Binding Domain Of Human
Alpha-Actinin-4 Mutant(K255e)
Length = 237
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 75/175 (42%), Gaps = 23/175 (13%)
Query: 42 GCTVVNIGTQDFIEGRRHLVLGVISQIIKIQLLADLNLKKTPQLLQLVDDSKDVEELMSL 101
G +V+IG ++ ++G + LG+I II + D+++++T
Sbjct: 84 GVKLVSIGAEEIVDGNAKMTLGMIWTIILRFAIQDISVEET------------------- 124
Query: 102 PPEKILLRWMNFHLKKAGYKKI-VTNFSSDIKDGEAYANLLNVLAPEHSNPSTLAVKNPL 160
++ LL W K A YK + V NF KDG A+ L++ PE L +P+
Sbjct: 125 SAKEGLLLWC--QRKTAPYKNVNVQNFHISWKDGLAFNALIHRHRPELIEYDKLRKDDPV 182
Query: 161 QRAKLILEHADR-MGCRRYLTAKDIVEGSPNLNLAFVAHIFQHRWVLLETLDKLS 214
E A++ + + L A+DIV + A + ++ LD+L+
Sbjct: 183 TNLNNAFEVAEKYLDIPKMLDAEDIVNTARPDEEAIMTYVSSFYHAFSGALDELN 237
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 229 KLPFRKVENCNQVVKIGKQLKFSLVNIAGNDIVQGNKKLILALLWQMM 276
K+ K+ N N+ + LV+I +IV GN K+ L ++W ++
Sbjct: 64 KMRVHKINNVNKALDFIASKGVKLVSIGAEEIVDGNAKMTLGMIWTII 111
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 11/98 (11%)
Query: 105 KILLRWMNFHLKKAGYKKIVTNFSSDIKDGEAYANLLNVLA------PEHSNPSTLAVKN 158
K W N HL+KAG + + N D +DG LL V++ PE + N
Sbjct: 15 KTFTAWCNSHLRKAGTQ--IENIDEDFRDGLKLMLLLEVISGERLPKPERGKMRVHKINN 72
Query: 159 PLQRAKLILEHADRMGCRRYLTAKDIVEGSPNLNLAFV 196
+ I ++ + A++IV+G+ + L +
Sbjct: 73 VNKALDFIASKGVKLVS---IGAEEIVDGNAKMTLGMI 107
>pdb|1SJJ|A Chain A, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha-
Actinin
pdb|1SJJ|B Chain B, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha-
Actinin
Length = 863
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 66/146 (45%), Gaps = 23/146 (15%)
Query: 42 GCTVVNIGTQDFIEGRRHLVLGVISQIIKIQLLADLNLKKTPQLLQLVDDSKDVEELMSL 101
G +V+IG ++ ++G + LG+I II + D+++++T
Sbjct: 80 GVKLVSIGAEEIVDGNVKMTLGMIWTIILRFAIQDISVEET------------------- 120
Query: 102 PPEKILLRWMNFHLKKAGYKKI-VTNFSSDIKDGEAYANLLNVLAPEHSNPSTLAVKNPL 160
++ LL W + K A YK + + NF KDG + L++ PE + L +PL
Sbjct: 121 SAKEGLLLW--YQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPELIDYGKLRKDDPL 178
Query: 161 QRAKLILEHADR-MGCRRYLTAKDIV 185
+ A++ + + L A+DIV
Sbjct: 179 TNLNTAFDVAEKYLDIPKMLDAEDIV 204
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 29/60 (48%)
Query: 217 IVNWKIANKPPIKLPFRKVENCNQVVKIGKQLKFSLVNIAGNDIVQGNKKLILALLWQMM 276
I ++A K+ K+ N N+ + LV+I +IV GN K+ L ++W ++
Sbjct: 48 ISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTII 107
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 105 KILLRWMNFHLKKAGYKKIVTNFSSDIKDGEAYANLLNVLAPE 147
K W N HL+KAG + + N D +DG LL V++ E
Sbjct: 11 KTFTAWCNSHLRKAGTQ--IENIEEDFRDGLKLMLLLEVISGE 51
>pdb|1TJT|A Chain A, X-Ray Structure Of The Human Alpha-Actinin Isoform 3 At
2.2a Resolution
Length = 250
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 67/146 (45%), Gaps = 23/146 (15%)
Query: 42 GCTVVNIGTQDFIEGRRHLVLGVISQIIKIQLLADLNLKKTPQLLQLVDDSKDVEELMSL 101
G +V+IG ++ ++G + LG+I II + D+++++T
Sbjct: 95 GVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEET------------------- 135
Query: 102 PPEKILLRWMNFHLKKAGYKKI-VTNFSSDIKDGEAYANLLNVLAPEHSNPSTLAVKNPL 160
++ LL W K A Y+ + V NF + KDG A L++ P+ + + L +P+
Sbjct: 136 SAKEGLLLWC--QRKTAPYRNVNVQNFHTSWKDGLALCALIHRHRPDLIDYAKLRKDDPI 193
Query: 161 QRAKLILEHADR-MGCRRYLTAKDIV 185
E A++ + + L A+DIV
Sbjct: 194 GNLNTAFEVAEKYLDIPKMLDAEDIV 219
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 229 KLPFRKVENCNQVVKIGKQLKFSLVNIAGNDIVQGNKKLILALLWQMM 276
K+ F K+ N N+ + LV+I +IV GN K+ L ++W ++
Sbjct: 75 KMRFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTII 122
Score = 27.7 bits (60), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 105 KILLRWMNFHLKKAGYKKIVTNFSSDIKDGEAYANLLNVLAPE 147
K W N HL+KAG + + N D ++G LL V++ E
Sbjct: 26 KTFTAWCNSHLRKAGTQ--IENIEEDFRNGLKLMLLLEVISGE 66
>pdb|1WKU|A Chain A, High Resolution Structure Of The Human Alpha-Actinin
Isoform 3
pdb|1WKU|B Chain B, High Resolution Structure Of The Human Alpha-Actinin
Isoform 3
Length = 254
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 67/146 (45%), Gaps = 23/146 (15%)
Query: 42 GCTVVNIGTQDFIEGRRHLVLGVISQIIKIQLLADLNLKKTPQLLQLVDDSKDVEELMSL 101
G +V+IG ++ ++G + LG+I II + D+++++T
Sbjct: 99 GVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEET------------------- 139
Query: 102 PPEKILLRWMNFHLKKAGYKKI-VTNFSSDIKDGEAYANLLNVLAPEHSNPSTLAVKNPL 160
++ LL W K A Y+ + V NF + KDG A L++ P+ + + L +P+
Sbjct: 140 SAKEGLLLWC--QRKTAPYRNVNVQNFHTSWKDGLALCALIHRHRPDLIDYAKLRKDDPI 197
Query: 161 QRAKLILEHADR-MGCRRYLTAKDIV 185
E A++ + + L A+DIV
Sbjct: 198 GNLNTAFEVAEKYLDIPKMLDAEDIV 223
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 229 KLPFRKVENCNQVVKIGKQLKFSLVNIAGNDIVQGNKKLILALLWQMM 276
K+ F K+ N N+ + LV+I +IV GN K+ L ++W ++
Sbjct: 79 KMRFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTII 126
>pdb|2EYI|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human
Alpha-Actinin 1 At 1.7 Angstrom Resolution
pdb|2EYN|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human
Alpha-Actinin 1 At 1.8 Angstrom Resolution
Length = 234
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 87/210 (41%), Gaps = 31/210 (14%)
Query: 16 INTKRLLNPWERNE-------NHTLCLNSAKAIGCTVVNIGTQDFIEGRRHLVLGVISQI 68
I+ +RL P ER + N L+ + G +V+IG ++ ++G + LG+I I
Sbjct: 47 ISGERLAKP-ERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTI 105
Query: 69 IKIQLLADLNLKKTPQLLQLVDDSKDVEELMSLPPEKILLRWMNFHLKKAGYKKI-VTNF 127
I + D+++++T ++ LL W K A YK + + NF
Sbjct: 106 ILRFAIQDISVEET-------------------SAKEGLLLWC--QRKTAPYKNVNIQNF 144
Query: 128 SSDIKDGEAYANLLNVLAPEHSNPSTLAVKNPLQRAKLILEHADR-MGCRRYLTAKDIVE 186
KDG + L++ PE + L +PL + A++ + + L A+DIV
Sbjct: 145 HISWKDGLGFCALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVG 204
Query: 187 GSPNLNLAFVAHIFQHRWVLLETLDKLSPG 216
+ A + ++ + L PG
Sbjct: 205 TARPDEKAIMTYVSSFYHAFSGAQEFLEPG 234
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 29/60 (48%)
Query: 217 IVNWKIANKPPIKLPFRKVENCNQVVKIGKQLKFSLVNIAGNDIVQGNKKLILALLWQMM 276
I ++A K+ K+ N N+ + LV+I +IV GN K+ L ++W ++
Sbjct: 47 ISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTII 106
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 99 MSLPPEKILLRWMNFHLKKAGYKKIVTNFSSDIKDGEAYANLLNVLAPE 147
M K W N HL+KAG + + N D +DG LL V++ E
Sbjct: 4 MEKQQRKTFTAWCNSHLRKAGTQ--IENIEEDFRDGLKLMLLLEVISGE 50
>pdb|1MB8|A Chain A, Crystal Structure Of The Actin Binding Domain Of Plectin
Length = 243
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 229 KLPFRKVENCNQVVKIGKQLKFSLVNIAGNDIVQGNKKLILALLWQMM 276
++ F K++N + + + LVNI +DI GN KL L L+W ++
Sbjct: 71 RMRFHKLQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTII 118
>pdb|3F7P|A Chain A, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
pdb|3F7P|B Chain B, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
Length = 296
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 229 KLPFRKVENCNQVVKIGKQLKFSLVNIAGNDIVQGNKKLILALLWQMM 276
++ F K++N + + + LVNI +DI GN KL L L+W ++
Sbjct: 124 RMRFHKLQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTII 171
>pdb|1SH5|A Chain A, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin
pdb|1SH5|B Chain B, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin
pdb|1SH6|A Chain A, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin
Length = 245
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 229 KLPFRKVENCNQVVKIGKQLKFSLVNIAGNDIVQGNKKLILALLWQMM 276
++ F K++N + + + LVNI +DI GN KL L L+W ++
Sbjct: 68 RMRFHKLQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTII 115
>pdb|1WYM|A Chain A, Solution Structure Of The Ch Domain Of Human Transgelin-2
Length = 155
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Query: 104 EKILLRWMNFHLKK--AGYKKIVTNFSSDIKDGEAYANLLNVLAPEHSNP------STLA 155
E+IL++W+ +K + NF + +KDG L+N L PE P ST+A
Sbjct: 19 EQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVLCELINALYPEGQAPVKKIQASTMA 78
Query: 156 VKNPLQRAKLILEHADRMG 174
K +++ L+ A+R G
Sbjct: 79 FKQ-MEQISQFLQAAERYG 96
>pdb|2D87|A Chain A, Solution Structure Of The Ch Domain From Human Smoothelin
Splice Isoform L2
Length = 128
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 104 EKILLRWMNFHLKKAGYKKI-VTNFSSDIKDGEAYANLLNVLAPEHSNPSTLAVKNPLQR 162
+++LL W K GY+ + + NFSS DG A+ L++ PE + L+ +N Q
Sbjct: 9 KQMLLDWC--RAKTRGYEHVDIQNFSSSWSDGMAFCALVHNFFPEAFDYGQLSPQNRRQN 66
Query: 163 AKLILEHAD-RMGCRRYLTAKDIV 185
++ A+ C + L +D+V
Sbjct: 67 FEVAFSSAETHADCPQLLDTEDMV 90
>pdb|2WA6|A Chain A, Structure Of The W148r Mutant Of Human Filamin B Actin
Binding Domain At 1.95 Angstroms Resolution
Length = 245
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 76/164 (46%), Gaps = 27/164 (16%)
Query: 29 ENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHLVLGVISQIIKIQLLADLNLKKTPQLLQL 88
EN ++ L +V+I ++ ++G L+LG++ +I ++ + +
Sbjct: 81 ENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLILHYSIS----------MPV 130
Query: 89 VDDSKDVEELMSLPPEKILLRWMNFHLKKAGYKKIVTNFSSDIKDGEAYANLLNVLAP-- 146
+D D + P +++L R N K Y I TNF+ + +DG+A L++ AP
Sbjct: 131 WEDEGDDDAKKQTPKQRLLGRIQN----KIPYLPI-TNFNQNWQDGKALGALVDSCAPGL 185
Query: 147 ----EHSNPSTLAVKNPLQRAKLILEHADR-MGCRRYLTAKDIV 185
E +P + P+ A+ ++ AD +G + +T ++I+
Sbjct: 186 CPDWESWDP-----QKPVDNAREAMQQADDWLGVPQVITPEEII 224
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 232 FRKV--ENCNQVVKIGKQLKFSLVNIAGNDIVQGNKKLILALLWQMM 276
FR++ EN + ++ + LV+I IV GN KLIL L+W ++
Sbjct: 75 FRQMQLENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLI 121
>pdb|3LUE|K Chain K, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|M Chain M, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|L Chain L, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|O Chain O, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|N Chain N, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|Q Chain Q, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|P Chain P, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|S Chain S, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|R Chain R, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|T Chain T, Model Of Alpha-Actinin Ch1 Bound To F-Actin
Length = 109
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 229 KLPFRKVENCNQVVKIGKQLKFSLVNIAGNDIVQGNKKLILALLWQMM 276
K+ F K+ N N+ + LV+I +IV GN K+ L ++W ++
Sbjct: 57 KMRFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTII 104
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 105 KILLRWMNFHLKKAGYKKIVTNFSSDIKDGEAYANLLNVLAPEH 148
K W N HL+KAG + + N D ++G LL V++ E
Sbjct: 8 KTFTAWCNSHLRKAGTQ--IENIEEDFRNGLKLMLLLEVISGER 49
>pdb|2WA5|A Chain A, Crystal Structure Of Human Filamin B Actin Binding Domain
At 1.9 Angstroms Resolution
Length = 245
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 77/164 (46%), Gaps = 27/164 (16%)
Query: 29 ENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHLVLGVISQIIKIQLLADLNLKKTPQLLQL 88
EN ++ L +V+I ++ ++G L+LG++ +I ++ + +
Sbjct: 81 ENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLILHYSIS----------MPV 130
Query: 89 VDDSKDVEELMSLPPEKILLRWMNFHLKKAGYKKIVTNFSSDIKDGEAYANLLNVLAP-- 146
+D D ++ P++ LL W+ K Y I TNF+ + +DG+A L++ AP
Sbjct: 131 WEDEGD-DDAKKQTPKQRLLGWIQ---NKIPYLPI-TNFNQNWQDGKALGALVDSCAPGL 185
Query: 147 ----EHSNPSTLAVKNPLQRAKLILEHADR-MGCRRYLTAKDIV 185
E +P + P+ A+ ++ AD +G + +T ++I+
Sbjct: 186 CPDWESWDP-----QKPVDNAREAMQQADDWLGVPQVITPEEII 224
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 232 FRKV--ENCNQVVKIGKQLKFSLVNIAGNDIVQGNKKLILALLWQMM 276
FR++ EN + ++ + LV+I IV GN KLIL L+W ++
Sbjct: 75 FRQMQLENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLI 121
>pdb|2WA7|A Chain A, Structure Of The M202v Mutant Of Human Filamin B Actin
Binding Domain At 1.85 Angstroms Resolution
Length = 245
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 77/164 (46%), Gaps = 27/164 (16%)
Query: 29 ENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHLVLGVISQIIKIQLLADLNLKKTPQLLQL 88
EN ++ L +V+I ++ ++G L+LG++ +I ++ + +
Sbjct: 81 ENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLILHYSIS----------MPV 130
Query: 89 VDDSKDVEELMSLPPEKILLRWMNFHLKKAGYKKIVTNFSSDIKDGEAYANLLNVLAP-- 146
+D D ++ P++ LL W+ K Y I TNF+ + +DG+A L++ AP
Sbjct: 131 WEDEGD-DDAKKQTPKQRLLGWIQ---NKIPYLPI-TNFNQNWQDGKALGALVDSCAPGL 185
Query: 147 ----EHSNPSTLAVKNPLQRAKLILEHADR-MGCRRYLTAKDIV 185
E +P + P+ A+ ++ AD +G + +T ++I+
Sbjct: 186 CPDWESWDP-----QKPVDNAREAVQQADDWLGVPQVITPEEII 224
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 232 FRKV--ENCNQVVKIGKQLKFSLVNIAGNDIVQGNKKLILALLWQMM 276
FR++ EN + ++ + LV+I IV GN KLIL L+W ++
Sbjct: 75 FRQMQLENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLI 121
>pdb|4B7L|A Chain A, Crystal Structure Of Human Filamin B Actin Binding Domain
With 1st Filamin Repeat
pdb|4B7L|B Chain B, Crystal Structure Of Human Filamin B Actin Binding Domain
With 1st Filamin Repeat
Length = 347
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 77/164 (46%), Gaps = 27/164 (16%)
Query: 29 ENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHLVLGVISQIIKIQLLADLNLKKTPQLLQL 88
EN ++ L +V+I ++ ++G L+LG++ +I ++ + +
Sbjct: 78 ENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLILHYSIS----------MPV 127
Query: 89 VDDSKDVEELMSLPPEKILLRWMNFHLKKAGYKKIVTNFSSDIKDGEAYANLLNVLAP-- 146
+D D ++ P++ LL W+ K Y I TNF+ + +DG+A L++ AP
Sbjct: 128 WEDEGD-DDAKKQTPKQRLLGWIQ---NKIPYLPI-TNFNQNWQDGKALGALVDSCAPGL 182
Query: 147 ----EHSNPSTLAVKNPLQRAKLILEHADR-MGCRRYLTAKDIV 185
E +P + P+ A+ ++ AD +G + +T ++I+
Sbjct: 183 CPDWESWDP-----QKPVDNAREAMQQADDWLGVPQVITPEEII 221
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 232 FRKV--ENCNQVVKIGKQLKFSLVNIAGNDIVQGNKKLILALLWQMM 276
FR++ EN + ++ + LV+I IV GN KLIL L+W ++
Sbjct: 72 FRQMQLENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLI 118
>pdb|3HOC|A Chain A, Structure Of The Actin-Binding Domain Of Human Filamin A
Mutant E254k
pdb|3HOC|B Chain B, Structure Of The Actin-Binding Domain Of Human Filamin A
Mutant E254k
Length = 272
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 78/166 (46%), Gaps = 19/166 (11%)
Query: 29 ENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHLVLGVISQIIKIQLLADLNLKKTPQLLQL 88
EN ++ L +V+I ++ ++G L+LG+I +I L+ + +
Sbjct: 108 ENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLIWTLI-------LHYSISMPMWDE 160
Query: 89 VDDSKDVEELMSLPPEKILLRWMNFHLKKAGYKKIVTNFSSDIKDGEAYANLLNVLAPE- 147
+D + ++ P++ LL W+ L + +TNFS D + G A L++ AP
Sbjct: 161 EEDEEAKKQT----PKQRLLGWIQNKLPQLP----ITNFSRDWQSGRALGALVDSCAPGL 212
Query: 148 HSNPSTLAVKNPLQRAKLILEHADR-MGCRRYLTAKDIVEGSPNLN 192
+ + P+ A+ ++ AD +G + +T ++IV+ PN++
Sbjct: 213 CPDWDSWDASKPVTNAREAMQQADDWLGIPQVITPEEIVD--PNVD 256
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 232 FRKV--ENCNQVVKIGKQLKFSLVNIAGNDIVQGNKKLILALLWQM-MRYNV 280
FR++ EN + ++ + LV+I IV GN KLIL L+W + + Y++
Sbjct: 102 FRQMQLENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLIWTLILHYSI 153
>pdb|3HOP|A Chain A, Structure Of The Actin-Binding Domain Of Human Filamin A
pdb|3HOP|B Chain B, Structure Of The Actin-Binding Domain Of Human Filamin A
pdb|3HOR|A Chain A, Structure Of The Actin-Binding Domain Of Human Filamin A
(Reduced)
pdb|3HOR|B Chain B, Structure Of The Actin-Binding Domain Of Human Filamin A
(Reduced)
Length = 272
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 78/166 (46%), Gaps = 19/166 (11%)
Query: 29 ENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHLVLGVISQIIKIQLLADLNLKKTPQLLQL 88
EN ++ L +V+I ++ ++G L+LG+I +I L+ + +
Sbjct: 108 ENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLIWTLI-------LHYSISMPMWDE 160
Query: 89 VDDSKDVEELMSLPPEKILLRWMNFHLKKAGYKKIVTNFSSDIKDGEAYANLLNVLAPE- 147
+D + ++ P++ LL W+ L + +TNFS D + G A L++ AP
Sbjct: 161 EEDEEAKKQT----PKQRLLGWIQNKLPQLP----ITNFSRDWQSGRALGALVDSCAPGL 212
Query: 148 HSNPSTLAVKNPLQRAKLILEHADR-MGCRRYLTAKDIVEGSPNLN 192
+ + P+ A+ ++ AD +G + +T ++IV+ PN++
Sbjct: 213 CPDWDSWDASKPVTNAREAMQQADDWLGIPQVITPEEIVD--PNVD 256
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 232 FRKV--ENCNQVVKIGKQLKFSLVNIAGNDIVQGNKKLILALLWQM-MRYNV 280
FR++ EN + ++ + LV+I IV GN KLIL L+W + + Y++
Sbjct: 102 FRQMQLENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLIWTLILHYSI 153
>pdb|2WFN|A Chain A, Filamin A Actin Binding Domain
pdb|2WFN|B Chain B, Filamin A Actin Binding Domain
Length = 278
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 78/166 (46%), Gaps = 19/166 (11%)
Query: 29 ENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHLVLGVISQIIKIQLLADLNLKKTPQLLQL 88
EN ++ L +V+I ++ ++G L+LG+I +I L+ + +
Sbjct: 105 ENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLIWTLI-------LHYSISMPMWDE 157
Query: 89 VDDSKDVEELMSLPPEKILLRWMNFHLKKAGYKKIVTNFSSDIKDGEAYANLLNVLAPE- 147
+D + ++ P++ LL W+ L + +TNFS D + G A L++ AP
Sbjct: 158 EEDEEAKKQT----PKQRLLGWIQNKLPQLP----ITNFSRDWQSGRALGALVDSCAPGL 209
Query: 148 HSNPSTLAVKNPLQRAKLILEHADR-MGCRRYLTAKDIVEGSPNLN 192
+ + P+ A+ ++ AD +G + +T ++IV+ PN++
Sbjct: 210 CPDWDSWDASKPVTNAREAMQQADDWLGIPQVITPEEIVD--PNVD 253
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 232 FRKV--ENCNQVVKIGKQLKFSLVNIAGNDIVQGNKKLILALLWQM-MRYNV 280
FR++ EN + ++ + LV+I IV GN KLIL L+W + + Y++
Sbjct: 99 FRQMQLENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLIWTLILHYSI 150
>pdb|3FER|A Chain A, Crystal Structure Of N-Terminal Actin-Binding Domain From
Human Filamin B (Tandem Ch-Domains). Northeast
Structural Genomics Consortium Target Hr5571a.
pdb|3FER|B Chain B, Crystal Structure Of N-Terminal Actin-Binding Domain From
Human Filamin B (Tandem Ch-Domains). Northeast
Structural Genomics Consortium Target Hr5571a.
pdb|3FER|C Chain C, Crystal Structure Of N-Terminal Actin-Binding Domain From
Human Filamin B (Tandem Ch-Domains). Northeast
Structural Genomics Consortium Target Hr5571a.
pdb|3FER|D Chain D, Crystal Structure Of N-Terminal Actin-Binding Domain From
Human Filamin B (Tandem Ch-Domains). Northeast
Structural Genomics Consortium Target Hr5571a
Length = 262
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 74/159 (46%), Gaps = 17/159 (10%)
Query: 29 ENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHLVLGVISQIIKIQLLADLNLKKTPQLLQL 88
EN ++ L +V+I ++ ++G L+LG++ +I ++ +
Sbjct: 88 ENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLILHYSIS----------XPV 137
Query: 89 VDDSKDVEELMSLPPEKILLRWMNFHLKKAGYKKIVTNFSSDIKDGEAYANLLNVLAPE- 147
+D D ++ P++ LL W+ K Y I TNF+ + +DG+A L++ AP
Sbjct: 138 WEDEGD-DDAKKQTPKQRLLGWIQ---NKIPYLPI-TNFNQNWQDGKALGALVDSCAPGL 192
Query: 148 HSNPSTLAVKNPLQRAKLILEHADR-MGCRRYLTAKDIV 185
+ + + P+ A+ + AD +G + +T ++I+
Sbjct: 193 CPDWESWDPQKPVDNAREAXQQADDWLGVPQVITPEEII 231
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 232 FRK--VENCNQVVKIGKQLKFSLVNIAGNDIVQGNKKLILALLWQMM 276
FR+ +EN + ++ + LV+I IV GN KLIL L+W ++
Sbjct: 82 FRQXQLENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLI 128
>pdb|1B0P|A Chain A, Crystal Structure Of Pyruvate-ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|1B0P|B Chain B, Crystal Structure Of Pyruvate-ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|2PDA|A Chain A, Crystal Structure Of The Complex Between
Pyruvate-Ferredoxin Oxidoreductase From Desulfovibrio
Africanus And Pyruvate.
pdb|2PDA|B Chain B, Crystal Structure Of The Complex Between
Pyruvate-Ferredoxin Oxidoreductase From Desulfovibrio
Africanus And Pyruvate.
pdb|1KEK|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase
pdb|1KEK|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase
pdb|2C3M|A Chain A, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|2C3M|B Chain B, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|2C3O|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2C3O|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2C3P|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2C3P|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2C3U|A Chain A, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus, Oxygen Inhibited Form
pdb|2C3U|B Chain B, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus, Oxygen Inhibited Form
pdb|2C3Y|A Chain A, Crystal Structure Of The Radical Form Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2C3Y|B Chain B, Crystal Structure Of The Radical Form Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2C42|A Chain A, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|2C42|B Chain B, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|2UZA|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2UZA|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
Length = 1231
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 10/91 (10%)
Query: 157 KNPLQRAKLILEHADRMGCRR--YLTAKDIVEGSPNLNLAFVAHIFQHRWVLLETLDKLS 214
+ P+Q L+ AD + C Y+ DI+EG + + W LE +DK
Sbjct: 471 EKPIQSTYLV-NRADYVACHNPAYVGIYDILEGIKDGG----TFVLNSPWSSLEDMDKHL 525
Query: 215 PGIVNWKIANKPPIKLPFRKVENCNQVVKIG 245
P + IANK KL F ++ +G
Sbjct: 526 PSGIKRTIANK---KLKFYNIDAVKIATDVG 553
>pdb|2OZ4|H Chain H, Structural Plasticity In Igsf Domain 4 Of Icam-1 Mediates
Cell Surface Dimerization
Length = 214
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 13/102 (12%)
Query: 256 AGNDIVQGNKKLILALLWQMMRYNVLQLLKNLRFHSHGKEITDADILQWANAKVRISGSQ 315
+G ++VQ + ++ + Y + + SHGK L+W I+G
Sbjct: 7 SGPELVQPGASVKISC--KTSGYTFSEFTMHWVKQSHGKS------LEWIGGINTINGGS 58
Query: 316 SHMNSFKDKSL-----ADGIFFLELLSAVQPRAVNWSLVTKG 352
S+ SFKDK+ + ++EL S + + TKG
Sbjct: 59 SYKQSFKDKATLTVDKSSSTAYMELNSLTSEDSAVYYCATKG 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,173,634
Number of Sequences: 62578
Number of extensions: 442353
Number of successful extensions: 1143
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1054
Number of HSP's gapped (non-prelim): 71
length of query: 381
length of database: 14,973,337
effective HSP length: 101
effective length of query: 280
effective length of database: 8,652,959
effective search space: 2422828520
effective search space used: 2422828520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)