Query 035967
Match_columns 381
No_of_seqs 259 out of 1336
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 08:04:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035967.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035967hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0046 Ca2+-binding actin-bun 100.0 2.3E-98 5E-103 737.2 25.2 371 1-373 163-586 (627)
2 COG5069 SAC6 Ca2+-binding acti 100.0 2.1E-43 4.6E-48 345.1 16.7 356 1-372 162-582 (612)
3 KOG0517 Beta-spectrin [Cytoske 100.0 6E-40 1.3E-44 354.7 13.1 168 21-203 99-270 (2473)
4 KOG0517 Beta-spectrin [Cytoske 100.0 3.3E-40 7.2E-45 356.7 11.0 189 102-375 48-240 (2473)
5 KOG0046 Ca2+-binding actin-bun 100.0 1.6E-30 3.4E-35 257.5 11.6 185 3-202 423-614 (627)
6 COG5069 SAC6 Ca2+-binding acti 99.9 7.6E-29 1.7E-33 243.2 5.0 323 20-371 61-456 (612)
7 KOG0035 Ca2+-binding actin-bun 99.9 1.4E-26 3E-31 244.3 5.8 164 21-203 79-247 (890)
8 KOG0035 Ca2+-binding actin-bun 99.9 1.6E-23 3.4E-28 221.3 2.3 186 103-375 28-216 (890)
9 smart00033 CH Calponin homolog 99.7 7.4E-17 1.6E-21 131.3 6.5 101 104-277 2-102 (103)
10 PF00307 CH: Calponin homology 99.6 6.9E-16 1.5E-20 126.7 8.7 100 104-203 1-107 (108)
11 cd00014 CH Calponin homology d 99.6 1.7E-15 3.8E-20 124.2 7.3 100 103-203 2-106 (107)
12 PF00307 CH: Calponin homology 99.0 3.1E-10 6.7E-15 93.0 6.1 73 298-371 1-74 (108)
13 smart00033 CH Calponin homolog 99.0 1.1E-10 2.5E-15 94.6 2.7 74 298-373 2-75 (103)
14 cd00014 CH Calponin homology d 98.8 4.2E-09 9.2E-14 86.1 2.8 69 1-72 37-106 (107)
15 PF11971 CAMSAP_CH: CAMSAP CH 98.3 1.2E-07 2.6E-12 75.1 0.4 66 304-372 1-68 (85)
16 PF11971 CAMSAP_CH: CAMSAP CH 98.3 2.1E-07 4.6E-12 73.7 1.7 65 122-186 11-83 (85)
17 KOG0518 Actin-binding cytoskel 98.0 2.2E-07 4.8E-12 100.1 -5.5 170 11-198 69-246 (1113)
18 KOG0518 Actin-binding cytoskel 97.9 7.8E-07 1.7E-11 96.0 -3.2 135 232-376 81-218 (1113)
19 KOG3631 Alpha-parvin and relat 97.8 0.00011 2.4E-09 69.1 9.5 173 104-279 92-362 (365)
20 KOG3631 Alpha-parvin and relat 97.0 0.0016 3.4E-08 61.5 6.3 98 103-202 258-361 (365)
21 KOG2046 Calponin [Cytoskeleton 96.5 0.0073 1.6E-07 54.7 6.5 91 102-267 25-116 (193)
22 PF06294 DUF1042: Domain of Un 96.2 0.0058 1.3E-07 54.1 4.4 98 107-279 1-99 (158)
23 PF06294 DUF1042: Domain of Un 95.6 0.0053 1.2E-07 54.4 1.5 58 301-363 1-58 (158)
24 KOG2046 Calponin [Cytoskeleton 92.2 0.11 2.4E-06 47.2 2.7 54 1-58 60-114 (193)
25 KOG0516 Dystonin, GAS (Growth- 92.0 0.069 1.5E-06 60.8 1.4 57 22-78 129-187 (1047)
26 KOG0532 Leucine-rich repeat (L 89.2 0.36 7.8E-06 50.7 3.6 85 102-187 572-667 (722)
27 COG5199 SCP1 Calponin [Cytoske 82.5 3.3 7.1E-05 36.2 5.5 84 103-188 14-100 (178)
28 KOG3000 Microtubule-binding pr 81.6 3.7 8E-05 40.0 6.2 92 103-200 16-112 (295)
29 KOG0516 Dystonin, GAS (Growth- 79.5 0.92 2E-05 51.8 1.5 52 231-282 131-185 (1047)
30 KOG2996 Rho guanine nucleotide 64.3 5.1 0.00011 42.3 2.6 54 2-55 46-101 (865)
31 PF05622 HOOK: HOOK protein; 62.5 5.6 0.00012 43.6 2.7 62 104-170 9-79 (713)
32 KOG2996 Rho guanine nucleotide 60.7 12 0.00026 39.6 4.5 71 193-263 30-102 (865)
33 cd08533 SAM_PNT-ETS-1,2 Steril 50.6 19 0.00042 27.5 3.1 37 297-337 8-45 (71)
34 COG5199 SCP1 Calponin [Cytoske 49.9 21 0.00046 31.3 3.6 77 198-279 38-116 (178)
35 cd08535 SAM_PNT-Tel_Yan Steril 48.9 20 0.00043 27.1 2.9 37 297-337 7-44 (68)
36 cd08531 SAM_PNT-ERG_FLI-1 Ster 46.1 22 0.00049 27.4 2.9 38 297-337 9-47 (75)
37 cd08540 SAM_PNT-ERG Sterile al 44.2 26 0.00056 27.1 3.0 37 297-337 9-47 (75)
38 cd08536 SAM_PNT-Mae Sterile al 43.6 28 0.0006 26.1 3.0 37 297-337 6-43 (66)
39 cd08542 SAM_PNT-ETS-1 Sterile 40.3 33 0.00072 27.3 3.1 37 297-337 23-60 (88)
40 PF05622 HOOK: HOOK protein; 39.6 15 0.00032 40.3 1.4 42 299-346 10-51 (713)
41 cd08541 SAM_PNT-FLI-1 Sterile 37.9 36 0.00078 27.3 3.0 37 297-337 21-59 (91)
42 cd08203 SAM_PNT Sterile alpha 37.5 39 0.00085 25.2 3.0 37 297-337 6-43 (66)
43 KOG2128 Ras GTPase-activating 37.1 40 0.00086 39.3 4.2 79 107-188 47-131 (1401)
44 cd08543 SAM_PNT-ETS-2 Sterile 36.1 42 0.00091 26.8 3.1 37 297-337 23-60 (89)
45 cd08534 SAM_PNT-GABP-alpha Ste 33.2 44 0.00095 26.7 2.8 37 297-337 23-60 (89)
46 cd08757 SAM_PNT_ESE Sterile al 32.6 51 0.0011 24.8 3.0 37 297-337 6-45 (68)
47 smart00251 SAM_PNT SAM / Point 30.9 60 0.0013 25.4 3.2 37 297-337 21-58 (82)
48 COG5261 IQG1 Protein involved 26.2 56 0.0012 36.3 2.9 39 108-149 50-88 (1054)
49 cd08538 SAM_PNT-ESE-2-like Ste 25.6 67 0.0015 25.0 2.6 37 297-337 11-50 (78)
50 cd08532 SAM_PNT-PDEF-like Ster 23.3 85 0.0018 24.2 2.8 37 297-337 14-50 (76)
No 1
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=100.00 E-value=2.3e-98 Score=737.19 Aligned_cols=371 Identities=63% Similarity=1.016 Sum_probs=362.0
Q ss_pred CcccccCCCCcccccccCCCCCCchHHHhhHHHHHHHHHHcCCeEeccCCCcccCCccchhHHHHHHHHHHHHHHhcccc
Q 035967 1 KLINVAVPGTIDERAINTKRLLNPWERNENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHLVLGVISQIIKIQLLADLNLK 80 (381)
Q Consensus 1 kl~n~~~p~tid~r~in~~~~~~r~~~~eN~~~al~~~k~~gi~lvnI~~~dI~dg~~~liLgLIWqII~~~~l~~i~~~ 80 (381)
||||.+.|||||||+||+|+++++|+..||+++||++|+.+||.+||||++||.+|.||||||||||||+++++.+|+++
T Consensus 163 KlIN~svPdTIDERaiN~kk~Lnp~~~~EN~~l~lnSAkAiGc~VvNIga~Dl~eGrphLVLGLiwQiIkiglladi~l~ 242 (627)
T KOG0046|consen 163 KLINLSVPDTIDERAINTKKKLNPFERNENLNLALNSAKAIGCTVVNIGAQDLAEGRPHLVLGLIWQIIKIGLLADINLK 242 (627)
T ss_pred hhhcccCCCchhhhhhccCCcCChhhhccchhhHHhhcccccceEEecCchhhhcCCceeeHHHHHHHHHHHHhhhcccc
Confidence 89999999999999999888999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccccCCCchhhhhhCCChHHHHHHHHHHHhhhcCCccccccccccccchHHHHHHHHHhCCCCCCCCcCCCCCHH
Q 035967 81 KTPQLLQLVDDSKDVEELMSLPPEKILLRWMNFHLKKAGYKKIVTNFSSDIKDGEAYANLLNVLAPEHSNPSTLAVKNPL 160 (381)
Q Consensus 81 ~~p~l~~l~~~~e~~~~~~~~s~e~~LL~Wvn~~l~~~g~~~~I~nF~~d~~DG~~l~aLl~~~~p~~~~~~~~~~~d~~ 160 (381)
.+|+|.++++++|+++++++++||++||||+|+|++++|+.+.++||++|+.||.+|..|++++.|+.++...+...+..
T Consensus 243 ~~p~L~~Ll~d~e~lEelm~L~PEkiLLrW~N~HL~kag~~k~~~nFs~DikD~eaY~~LLnqlap~~~~~~~l~~~d~l 322 (627)
T KOG0046|consen 243 KNPQLVRLLEDGETLEELMRLPPEKILLRWMNYHLKKAGWKKTVTNFSSDIKDSEAYTHLLNQLAPEHCSPAPLQETDDL 322 (627)
T ss_pred cCHHHHHHHhCCccHHHHhcCCHHHHHHHHHHHHHHhcccceehhhhhhhhccHHHHHHHHHHhccccCCccccccCChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHhhCCcccccccccccCCCchhHHHHHHHhhhH-------------------------------------
Q 035967 161 QRAKLILEHADRMGCRRYLTAKDIVEGSPNLNLAFVAHIFQHR------------------------------------- 203 (381)
Q Consensus 161 ~na~~a~~~Ae~Lgi~~~L~peDI~~~~~k~il~~va~lf~~~------------------------------------- 203 (381)
+||+.+++-|++++|.++++|.|++.|+|+++++|||++|+++
T Consensus 323 ~RA~~vLq~Aekl~Cr~~ltp~dvV~G~~kLNLAFVA~lFn~~pgL~~~~~~~~~e~~~~~~~~~reer~fr~WmNSlgv 402 (627)
T KOG0046|consen 323 ERAELVLQQAEKLDCRRYLTPTDVVAGNPKLNLAFVANLFNTHPGLEKPENEEIAEMMTEDEEESREERTFRLWMNSLGV 402 (627)
T ss_pred hHHHHHHHHHHhcCCccccCHHHHhcCCchhhHHHHHHhcccCCCCCCccccchhcccchhHhHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999998
Q ss_pred --------------HHHHHhhcccCCCcccccccCCC--CCCCchhhhhhHHHHHHHhhhcCeeeeecCCCcccCCcchh
Q 035967 204 --------------WVLLETLDKLSPGIVNWKIANKP--PIKLPFRKVENCNQVVKIGKQLKFSLVNIAGNDIVQGNKKL 267 (381)
Q Consensus 204 --------------~~ll~~~~ki~pg~v~w~~~~~~--p~~~~~~~~eN~n~~~~~~~~~~~~lvni~~~dI~dgn~kl 267 (381)
+||+++||||.||.|+|++++|| |.++.|+++||||||++++++++|++|||+|+||+|||++|
T Consensus 403 ~p~vn~~f~Dl~dglVllq~~dki~pg~Vnwk~vnKp~~~~~~~~kklENcNyav~lGk~~~FSLVgi~G~DI~dGNk~L 482 (627)
T KOG0046|consen 403 NPYVNNLFEDLRDGLVLLQLYDKVSPGSVNWKHVNKPPSPLKMPFKKVENCNYAVKLGKQLKFSLVGIAGQDIVDGNKTL 482 (627)
T ss_pred cHHHHHHHHhhhhhhHHHHHHHHccCCccchhhccCCCCcccccHHHhhcchHHHHHHhhcceeeeccccccccccchHh
Confidence 89999999999999999999998 55788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhccccCCCCCCCHHHHHHHHHhhhccCCCccccCCCCCCCccchhHHHHHHHhhCCCCcccc
Q 035967 268 ILALLWQMMRYNVLQLLKNLRFHSHGKEITDADILQWANAKVRISGSQSHMNSFKDKSLADGIFFLELLSAVQPRAVNWS 347 (381)
Q Consensus 268 iLgLiW~li~~~~~~~~~~~~~~~~~~~~~~~~lL~W~~~~~~~~~~~~~i~nF~d~sw~dG~~~~aLi~~~~P~~id~~ 347 (381)
||||+|||||+|+++++.+++. +|+++++++++.|+|+++...|+...|.+|.|++.+||++|++||++++|+.|||+
T Consensus 483 tLAlvWQLMR~ytL~vL~~l~~--~~~~~tD~dIv~WaN~klk~~Gk~s~IrSFkD~siS~g~~vLDLidaI~P~~Vn~~ 560 (627)
T KOG0046|consen 483 TLALVWQLMRRYTLQVLKSLRS--GGKDITDSDIVNWANRKLKKAGKKSQIRSFKDKSISDGLFVLDLLDAIKPGVVNYS 560 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--cCCCCcHHHHHHHHHHHHHhcCCccccccccCcccccCcchHHHHhhcCcCccchh
Confidence 9999999999999999998886 46689999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCccchhhhHHHhhhcccccc
Q 035967 348 LVTKGVTGMFSSNHTRCAVTLIGNSS 373 (381)
Q Consensus 348 ~~~~~~~~~~~~~n~~~a~~~a~~~~ 373 (381)
.|++++|++|++.||+||+++|++=+
T Consensus 561 LV~~G~t~EdK~~NAkYaIS~ARKiG 586 (627)
T KOG0046|consen 561 LVTSGNTDEEKLLNAKYAISVARKLG 586 (627)
T ss_pred hccCCCChhhhhhcchhhHhHHHhhC
Confidence 99999999999999999999998754
No 2
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=100.00 E-value=2.1e-43 Score=345.15 Aligned_cols=356 Identities=33% Similarity=0.554 Sum_probs=320.1
Q ss_pred CcccccCCCCcccccccC--C-CCCCchHHHhhHHHHHHHHHHcC-CeEeccCCCcccCCccchhHHHHHHHHHHHHHHh
Q 035967 1 KLINVAVPGTIDERAINT--K-RLLNPWERNENHTLCLNSAKAIG-CTVVNIGTQDFIEGRRHLVLGVISQIIKIQLLAD 76 (381)
Q Consensus 1 kl~n~~~p~tid~r~in~--~-~~~~r~~~~eN~~~al~~~k~~g-i~lvnI~~~dI~dg~~~liLgLIWqII~~~~l~~ 76 (381)
||||-..|+|||+|+.+. + ++.|-+|+.+|.+.+|.+++.+| +.+|||+..| + ..++++ ++||+|++..++.
T Consensus 162 aLIh~~rPDtld~n~ld~qkknk~~n~~qafe~a~k~Igi~rli~vedivnV~~pD--E-Rsimty-v~~y~~rf~~l~K 237 (612)
T COG5069 162 ALIHDSRPDTLDPNVLDLQKKNKALNNFQAFENANKVIGIARLIGVEDIVNVSIPD--E-RSIMTY-VSWYIIRFGLLEK 237 (612)
T ss_pred HHHhhcCCcccCccccchhhcccchhHHHHHHHHHHhhchHhhcCcceeeecCCcc--h-HHHHHH-HHHHHHHHhhHHH
Confidence 589999999999999993 2 47889999999999999999988 8899999999 4 888999 9999999999999
Q ss_pred cccccCcccccccCCCchhhhhhCCChHHHHHHHHH-HHhhhcCCccccccccccccchHHHHHHHHHhCCCCCCCCcCC
Q 035967 77 LNLKKTPQLLQLVDDSKDVEELMSLPPEKILLRWMN-FHLKKAGYKKIVTNFSSDIKDGEAYANLLNVLAPEHSNPSTLA 155 (381)
Q Consensus 77 i~~~~~p~l~~l~~~~e~~~~~~~~s~e~~LL~Wvn-~~l~~~g~~~~I~nF~~d~~DG~~l~aLl~~~~p~~~~~~~~~ 155 (381)
+...-+ ++.++++..++..+ +++++|.+++||+| +|+..+ + .+++||+.+.+||..+..|+.++. .+|...++.
T Consensus 238 id~al~-rv~rllE~~et~~q-lrl~yE~~l~rll~~i~~~q~-~-w~v~~f~k~vsd~en~t~ll~ql~-alcsRa~le 312 (612)
T COG5069 238 IDIALH-RVYRLLEADETLIQ-LRLPYEIILLRLLNLIHLKQA-N-WKVVNFSKDVSDGENYTDLLNQLN-ALCSRAPLE 312 (612)
T ss_pred HHHHHH-HHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhc-c-cchhhhhhhhhhHHHHHHHHHHHH-HHhhcccch
Confidence 887655 77788877777766 78999999999999 776543 2 469999999999999999999999 888888888
Q ss_pred CCCHHHHHHHHHHhHHhhCCcccccccccccCCCchhHHHHHHHhhhH--------------------------------
Q 035967 156 VKNPLQRAKLILEHADRMGCRRYLTAKDIVEGSPNLNLAFVAHIFQHR-------------------------------- 203 (381)
Q Consensus 156 ~~d~~~na~~a~~~Ae~Lgi~~~L~peDI~~~~~k~il~~va~lf~~~-------------------------------- 203 (381)
..|..+++..+.+.|+++.|+++++| .|+|+..++|++.+|+++
T Consensus 313 ttdl~sl~gqi~~n~e~y~~RKY~pP----AGnpkldla~~~~lF~t~~~qe~l~~~~~~eI~e~d~e~efear~~Tf~l 388 (612)
T COG5069 313 TTDLHSLAGQILQNAEKYDCRKYLPP----AGNPKLDLAFVAHLFNTHPGQEPLEEEEKPEIEEFDAEGEFEARVFTFWL 388 (612)
T ss_pred hhhHHHHHHHHHHHHHHhhhhccCCC----CCCcccchHHHHhhcCCCcccchhhhhcccccCCcchhhHHHHHHHHHHH
Confidence 88999999999999999999999999 899999999999999998
Q ss_pred -------------------HHHHHhhcccC-CCcccccccCCCCC----CCchhhhhhHHHHHHHhhhcCeeeeecCCCc
Q 035967 204 -------------------WVLLETLDKLS-PGIVNWKIANKPPI----KLPFRKVENCNQVVKIGKQLKFSLVNIAGND 259 (381)
Q Consensus 204 -------------------~~ll~~~~ki~-pg~v~w~~~~~~p~----~~~~~~~eN~n~~~~~~~~~~~~lvni~~~d 259 (381)
+++++.++++. |++|+|+.|++.|. -++|++.|||||++++++..||++|+|.+.|
T Consensus 389 ~~~~vsp~i~~l~gd~Rdql~~lq~l~k~l~p~tv~~~~vk~~~asG~E~~rfka~en~nyavdlG~~~gf~~v~ik~le 468 (612)
T COG5069 389 NSLDVSPEITNLFGDLRDQLILLQALSKKLMPMTVTHKLVKKQPASGIEENRFKAFENENYAVDLGITEGFSLVGIKGLE 468 (612)
T ss_pred HHhcCChhhhhhcccHHHHHHHHHHHHhhcCCceechhhhcccccccchhhhhhhhcccchhhhhhhhcCeeeeeechhh
Confidence 67889999987 99999999998764 3699999999999999999999999999999
Q ss_pred ccCCcchhHHHHHHHHHHHHHHHhhhhccccCCCCCCCHHHHHHHHHhhhccCCCccccCCCCCCCccc-hhHHHHHHHh
Q 035967 260 IVQGNKKLILALLWQMMRYNVLQLLKNLRFHSHGKEITDADILQWANAKVRISGSQSHMNSFKDKSLAD-GIFFLELLSA 338 (381)
Q Consensus 260 I~dgn~kliLgLiW~li~~~~~~~~~~~~~~~~~~~~~~~~lL~W~~~~~~~~~~~~~i~nF~d~sw~d-G~~~~aLi~~ 338 (381)
|.||++ +.++|+||+|+.-+.-....++. +|..+++-++..|+++....++++..|..|.|++-+. |..++..++.
T Consensus 469 ~~~~~r-~k~tl~~q~l~~~t~~f~h~lkk--~~~~lsdsd~~a~l~slgl~~dk~egi~~F~~~a~s~~gv~yl~v~~~ 545 (612)
T COG5069 469 ILDGIR-LKLTLVWQVLRSNTALFNHVLKK--DGCGLSDSDLCAWLGSLGLKGDKEEGIRSFGDPAGSVSGVFYLDVLKG 545 (612)
T ss_pred hhhhhH-HHHHHHHHHHHHHHHHHHHHHhc--CCCCCCHHHHHHHHHHhccccCCccceeeccCCccccccchHHHHHHH
Confidence 999999 99999999998776554444443 5778999999999999999998888999999999999 9999999999
Q ss_pred hCCCCcccccccCCCCccchhhhHH-Hhhh--ccccc
Q 035967 339 VQPRAVNWSLVTKGVTGMFSSNHTR-CAVT--LIGNS 372 (381)
Q Consensus 339 ~~P~~id~~~~~~~~~~~~~~~n~~-~a~~--~a~~~ 372 (381)
+.|+++||+.++++.+..+...|++ ||++ +|+.-
T Consensus 546 i~sel~D~d~v~~~~~~f~diad~rsl~is~~ilRs~ 582 (612)
T COG5069 546 IHSELVDYDLVTRGFTEFDDIADARSLAISSKILRSL 582 (612)
T ss_pred HhhhhcChhhhhhhHHHHHHhhhhhhhhccHHHHHHh
Confidence 9999999999999988889999999 9998 66543
No 3
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=100.00 E-value=6e-40 Score=354.73 Aligned_cols=168 Identities=23% Similarity=0.386 Sum_probs=154.4
Q ss_pred CCCchHHHhhHHHHHHHHHHcCCeEeccCCCcccCCccchhHHHHHHHHHHHHHHhcccccCcccccccCCCchhhhhhC
Q 035967 21 LLNPWERNENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHLVLGVISQIIKIQLLADLNLKKTPQLLQLVDDSKDVEELMS 100 (381)
Q Consensus 21 ~~~r~~~~eN~~~al~~~k~~gi~lvnI~~~dI~dg~~~liLgLIWqII~~~~l~~i~~~~~p~l~~l~~~~e~~~~~~~ 100 (381)
..||+|++||++.||+|+|+.+|.|.|||++||||||++|||||||+||++|+|+.|++..-. +.| .
T Consensus 99 GRMRIH~LENvdKaLqFLkeqkVhLEniGshDIVDGN~rL~LGLIWTIILRFQIq~I~ie~ed-------n~E------~ 165 (2473)
T KOG0517|consen 99 GRMRIHCLENVDKALQFLKEQKVHLENIGSHDIVDGNHRLILGLIWTIILRFQIQDISIETED-------NRE------T 165 (2473)
T ss_pred CceeehhHhhhHHHHHHHHhcccccccCCcccccCCcchhhHHHHHHHHHheeeeeeEeeccc-------chh------h
Confidence 579999999999999999999999999999999999999999999999999999999874321 112 2
Q ss_pred CChHHHHHHHHHHHhhhcCCcc-ccccccccccchHHHHHHHHHhCCCCCCCCcCCCCCHHHHHHHHHHhHHh-hCCccc
Q 035967 101 LPPEKILLRWMNFHLKKAGYKK-IVTNFSSDIKDGEAYANLLNVLAPEHSNPSTLAVKNPLQRAKLILEHADR-MGCRRY 178 (381)
Q Consensus 101 ~s~e~~LL~Wvn~~l~~~g~~~-~I~nF~~d~~DG~~l~aLl~~~~p~~~~~~~~~~~d~~~na~~a~~~Ae~-Lgi~~~ 178 (381)
.|++.+||-||+..+ +||+. +|+|||+||+||++|.||||+|+|+++||+.+.+.+...|+..||++|++ |||+++
T Consensus 166 rSAKDALLLWCQmKT--AGYpnVNI~nFTtSWRdGLaFNALIHkHRPDLvDf~~L~k~na~~NL~~AFdvAE~~LGia~L 243 (2473)
T KOG0517|consen 166 RSAKDALLLWCQMKT--AGYPNVNITNFTTSWRDGLAFNALIHKHRPDLVDFDKLKKSNALYNLQHAFDVAEQELGIAKL 243 (2473)
T ss_pred hhHHHHHHHHHHhhc--cCCCCcccccCccchhcchhHHHHHHhcCcchhhhcccCCCchhhHHHHHHHHHHHHcCchhc
Confidence 389999999999877 47775 89999999999999999999999999999999999999999999999995 999999
Q ss_pred ccccccccCCC--chhHHHHHHHhhhH
Q 035967 179 LTAKDIVEGSP--NLNLAFVAHIFQHR 203 (381)
Q Consensus 179 L~peDI~~~~~--k~il~~va~lf~~~ 203 (381)
|+||||....| |||+|||+.|||+|
T Consensus 244 LDpEDV~v~~PDEKSIITYV~~YYHyF 270 (2473)
T KOG0517|consen 244 LDPEDVNVEQPDEKSIITYVVTYYHYF 270 (2473)
T ss_pred CCHhhcCccCCCcchHHHHHHHHHHHH
Confidence 99999987655 89999999999998
No 4
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=100.00 E-value=3.3e-40 Score=356.67 Aligned_cols=189 Identities=24% Similarity=0.450 Sum_probs=163.8
Q ss_pred ChHHHHHHHHHHHhhhcCCccccccccccccchHHHHHHHHHhCCCCCCCCcCCCCCHHHHHHHHHHhHHhhCCcccccc
Q 035967 102 PPEKILLRWMNFHLKKAGYKKIVTNFSSDIKDGEAYANLLNVLAPEHSNPSTLAVKNPLQRAKLILEHADRMGCRRYLTA 181 (381)
Q Consensus 102 s~e~~LL~Wvn~~l~~~g~~~~I~nF~~d~~DG~~l~aLl~~~~p~~~~~~~~~~~d~~~na~~a~~~Ae~Lgi~~~L~p 181 (381)
.++++|++|||.|+.+.+. +|.|+.+|++||+.++.||+.++++.++.
T Consensus 48 vQKKTFTKWvNShL~rv~c--~I~DLy~DlrDG~~LlkLLEvlSGE~Lpk------------------------------ 95 (2473)
T KOG0517|consen 48 VQKKTFTKWVNSHLARVSC--RIGDLYTDLRDGIMLLKLLEVLSGERLPK------------------------------ 95 (2473)
T ss_pred HHHHhHHHHHHHHHHHhcc--hhHHHHHHHhhhHHHHHHHHHHccccCCC------------------------------
Confidence 5899999999999988765 79999999999999999999999987642
Q ss_pred cccccCCCchhHHHHHHHhhhHHHHHHhhcccCCCcccccccCCCCCCCchhhhhhHHHHHHHhhhcCeeeeecCCCccc
Q 035967 182 KDIVEGSPNLNLAFVAHIFQHRWVLLETLDKLSPGIVNWKIANKPPIKLPFRKVENCNQVVKIGKQLKFSLVNIAGNDIV 261 (381)
Q Consensus 182 eDI~~~~~k~il~~va~lf~~~~~ll~~~~ki~pg~v~w~~~~~~p~~~~~~~~eN~n~~~~~~~~~~~~lvni~~~dI~ 261 (381)
| .+.+||+||+||++.|+.|.|.-+|.|-|||+.|||
T Consensus 96 ---------------------------------P----------trGRMRIH~LENvdKaLqFLkeqkVhLEniGshDIV 132 (2473)
T KOG0517|consen 96 ---------------------------------P----------TRGRMRIHCLENVDKALQFLKEQKVHLENIGSHDIV 132 (2473)
T ss_pred ---------------------------------C----------CCCceeehhHhhhHHHHHHHHhcccccccCCccccc
Confidence 1 134899999999999999999989999999999999
Q ss_pred CCcchhHHHHHHHHHH-HHHHHh-hhhccccCCCC-CCCHHH-HHHHHHhhhccCCCccccCCCCCCCccchhHHHHHHH
Q 035967 262 QGNKKLILALLWQMMR-YNVLQL-LKNLRFHSHGK-EITDAD-ILQWANAKVRISGSQSHMNSFKDKSLADGIFFLELLS 337 (381)
Q Consensus 262 dgn~kliLgLiW~li~-~~~~~~-~~~~~~~~~~~-~~~~~~-lL~W~~~~~~~~~~~~~i~nF~d~sw~dG~~~~aLi~ 337 (381)
|||.+|||||||+||. |||..+ +... +++ .-|.|+ ||.|||.+|++|. +|+|+||| +||+||++|+||||
T Consensus 133 DGN~rL~LGLIWTIILRFQIq~I~ie~e----dn~E~rSAKDALLLWCQmKTAGYp-nVNI~nFT-tSWRdGLaFNALIH 206 (2473)
T KOG0517|consen 133 DGNHRLILGLIWTIILRFQIQDISIETE----DNRETRSAKDALLLWCQMKTAGYP-NVNITNFT-TSWRDGLAFNALIH 206 (2473)
T ss_pred CCcchhhHHHHHHHHHheeeeeeEeecc----cchhhhhHHHHHHHHHHhhccCCC-CcccccCc-cchhcchhHHHHHH
Confidence 9999999999999995 555443 2211 222 234555 9999999999994 89999999 99999999999999
Q ss_pred hhCCCCcccccccCCCCccchhhhHHHhhhccccccch
Q 035967 338 AVQPRAVNWSLVTKGVTGMFSSNHTRCAVTLIGNSSML 375 (381)
Q Consensus 338 ~~~P~~id~~~~~~~~~~~~~~~n~~~a~~~a~~~~~~ 375 (381)
+|||++|||+.+.+. +++.|+..||++||+..-+
T Consensus 207 kHRPDLvDf~~L~k~----na~~NL~~AFdvAE~~LGi 240 (2473)
T KOG0517|consen 207 KHRPDLVDFDKLKKS----NALYNLQHAFDVAEQELGI 240 (2473)
T ss_pred hcCcchhhhcccCCC----chhhHHHHHHHHHHHHcCc
Confidence 999999999999876 7889999999999987644
No 5
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=99.97 E-value=1.6e-30 Score=257.50 Aligned_cols=185 Identities=27% Similarity=0.431 Sum_probs=163.8
Q ss_pred ccccCCCCcccccccCCC--CCCchHHHhhHHHHHHHHHHcCCeEeccCCCcccCCccchhHHHHHHHHHHHHHHhcccc
Q 035967 3 INVAVPGTIDERAINTKR--LLNPWERNENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHLVLGVISQIIKIQLLADLNLK 80 (381)
Q Consensus 3 ~n~~~p~tid~r~in~~~--~~~r~~~~eN~~~al~~~k~~gi~lvnI~~~dI~dg~~~liLgLIWqII~~~~l~~i~~~ 80 (381)
.+++.||+++|+.+||+| -.+.|.++||||+|++..|+.+..+|||.+.||+|||.+|+|||+||++|+|.++.+..
T Consensus 423 ~dki~pg~Vnwk~vnKp~~~~~~~~kklENcNyav~lGk~~~FSLVgi~G~DI~dGNk~LtLAlvWQLMR~ytL~vL~~- 501 (627)
T KOG0046|consen 423 YDKVSPGSVNWKHVNKPPSPLKMPFKKVENCNYAVKLGKQLKFSLVGIAGQDIVDGNKTLTLALVWQLMRRYTLQVLKS- 501 (627)
T ss_pred HHHccCCccchhhccCCCCcccccHHHhhcchHHHHHHhhcceeeeccccccccccchHhHHHHHHHHHHHHHHHHHHH-
Confidence 467899999999999984 34669999999999999999999999999999999999999999999999999876531
Q ss_pred cCcccccccCCCchhhhhhCCChHHHHHHHHHHHhhhcCCcccccccc-ccccchHHHHHHHHHhCCCCCCCCcCC----
Q 035967 81 KTPQLLQLVDDSKDVEELMSLPPEKILLRWMNFHLKKAGYKKIVTNFS-SDIKDGEAYANLLNVLAPEHSNPSTLA---- 155 (381)
Q Consensus 81 ~~p~l~~l~~~~e~~~~~~~~s~e~~LL~Wvn~~l~~~g~~~~I~nF~-~d~~DG~~l~aLl~~~~p~~~~~~~~~---- 155 (381)
+-..+. ...++.++.|+|..+.+.|....|.+|. .+++||++++.||+++.|+.++++-+.
T Consensus 502 -------l~~~~~-------~~tD~dIv~WaN~klk~~Gk~s~IrSFkD~siS~g~~vLDLidaI~P~~Vn~~LV~~G~t 567 (627)
T KOG0046|consen 502 -------LRSGGK-------DITDSDIVNWANRKLKKAGKKSQIRSFKDKSISDGLFVLDLLDAIKPGVVNYSLVTSGNT 567 (627)
T ss_pred -------HhhcCC-------CCcHHHHHHHHHHHHHhcCCccccccccCcccccCcchHHHHhhcCcCccchhhccCCCC
Confidence 111111 2467789999999999988777999997 569999999999999999999997654
Q ss_pred CCCHHHHHHHHHHhHHhhCCcccccccccccCCCchhHHHHHHHhhh
Q 035967 156 VKNPLQRAKLILEHADRMGCRRYLTAKDIVEGSPNLNLAFVAHIFQH 202 (381)
Q Consensus 156 ~~d~~~na~~a~~~Ae~Lgi~~~L~peDI~~~~~k~il~~va~lf~~ 202 (381)
++++..||++|+++|+++|+..++-||||+..+|||+||+.|+++..
T Consensus 568 ~EdK~~NAkYaIS~ARKiGa~IyaLPEDIvEV~pKMvltvfA~lM~~ 614 (627)
T KOG0046|consen 568 DEEKLLNAKYAISVARKLGASIYALPEDIVEVNPKMVLTVFASLMAW 614 (627)
T ss_pred hhhhhhcchhhHhHHHhhCceEEeccHHHhhhchhhhHHHHHHHHHh
Confidence 56888999999999999999999999999999999999999999973
No 6
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=99.95 E-value=7.6e-29 Score=243.19 Aligned_cols=323 Identities=23% Similarity=0.287 Sum_probs=230.0
Q ss_pred CCCCchHHHhhHHHHHHHHHHcCCeEeccCCCcccCCccchhHHHHHHHHHHHHHHhcccccCcccccccCCCchhhhhh
Q 035967 20 RLLNPWERNENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHLVLGVISQIIKIQLLADLNLKKTPQLLQLVDDSKDVEELM 99 (381)
Q Consensus 20 ~~~~r~~~~eN~~~al~~~k~~gi~lvnI~~~dI~dg~~~liLgLIWqII~~~~l~~i~~~~~p~l~~l~~~~e~~~~~~ 99 (381)
.|-+|+|++||++.+++|.+..|+++.||+|.|||||++++++||||++|.++.+.+|+- ++
T Consensus 61 ~p~tr~h~~envs~~le~ik~kg~~l~Nigp~divdGn~klilGliw~lisr~tia~inE-----------eg------- 122 (612)
T COG5069 61 TPETRIHVMENVSGRLEFIKGKGVKLFNIGPQDIVDGNPKLILGLIWSLISRLTIATINE-----------EG------- 122 (612)
T ss_pred CHHHHHHHhhccccceeeeccCCceeeeeCccccccCchhhhheeeeeeeehhhhhcccc-----------hh-------
Confidence 378999999999999999999999999999999999999999999999999999888751 22
Q ss_pred CCChHHHHHHHHHHHhhhcCCccccccccccccchHHHHHHHHHhCCCCCCCCcCC--CCCHHHHHHHHHHhHHh-hCCc
Q 035967 100 SLPPEKILLRWMNFHLKKAGYKKIVTNFSSDIKDGEAYANLLNVLAPEHSNPSTLA--VKNPLQRAKLILEHADR-MGCR 176 (381)
Q Consensus 100 ~~s~e~~LL~Wvn~~l~~~g~~~~I~nF~~d~~DG~~l~aLl~~~~p~~~~~~~~~--~~d~~~na~~a~~~Ae~-Lgi~ 176 (381)
.++...-++.||...+..+-.+..+.+|+.+|+||.+||+|+|.++|+.+|+..++ .++...|...||++|++ +|++
T Consensus 123 elt~~~~lllwc~~~t~~y~p~vd~~df~rswrdGLaf~aLIh~~rPDtld~n~ld~qkknk~~n~~qafe~a~k~Igi~ 202 (612)
T COG5069 123 ELTKHINLLLWCDEDTGGYKPEVDTFDFFRSWRDGLAFSALIHDSRPDTLDPNVLDLQKKNKALNNFQAFENANKVIGIA 202 (612)
T ss_pred hHHhhhhhheeccccccCcCCCccHHHHHHHhhhhHHHHHHHhhcCCcccCccccchhhcccchhHHHHHHHHHHhhchH
Confidence 13566779999999887554445789999999999999999999999999998876 67888899999999998 9999
Q ss_pred ccccccccccC---CCchhHHHHHHHhhhH-------------------------------HHHHHhhcccCCCcccccc
Q 035967 177 RYLTAKDIVEG---SPNLNLAFVAHIFQHR-------------------------------WVLLETLDKLSPGIVNWKI 222 (381)
Q Consensus 177 ~~L~peDI~~~---~~k~il~~va~lf~~~-------------------------------~~ll~~~~ki~pg~v~w~~ 222 (381)
+++..+||++. +++++|+||+-+|+.+ ..++++|..++--.-+|+-
T Consensus 203 rli~vedivnV~~pDERsimtyv~~y~~rf~~l~Kid~al~rv~rllE~~et~~qlrl~yE~~l~rll~~i~~~q~~w~v 282 (612)
T COG5069 203 RLIGVEDIVNVSIPDERSIMTYVSWYIIRFGLLEKIDIALHRVYRLLEADETLIQLRLPYEIILLRLLNLIHLKQANWKV 282 (612)
T ss_pred hhcCcceeeecCCcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcccch
Confidence 99999999875 3478999999999888 3455666655443345652
Q ss_pred cC--CCCC-----------------CCchhhhhhHH---HHHHHhhhcCeeeeecCCCcccCCcchhHHHHHHHHHH-HH
Q 035967 223 AN--KPPI-----------------KLPFRKVENCN---QVVKIGKQLKFSLVNIAGNDIVQGNKKLILALLWQMMR-YN 279 (381)
Q Consensus 223 ~~--~~p~-----------------~~~~~~~eN~n---~~~~~~~~~~~~lvni~~~dI~dgn~kliLgLiW~li~-~~ 279 (381)
++ +... |...+..+=-+ .++.-++...+. -+.+. -||+|+-|+++|-+.. +.
T Consensus 283 ~~f~k~vsd~en~t~ll~ql~alcsRa~lettdl~sl~gqi~~n~e~y~~R--KY~pP---AGnpkldla~~~~lF~t~~ 357 (612)
T COG5069 283 VNFSKDVSDGENYTDLLNQLNALCSRAPLETTDLHSLAGQILQNAEKYDCR--KYLPP---AGNPKLDLAFVAHLFNTHP 357 (612)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHhhhh--ccCCC---CCCcccchHHHHhhcCCCc
Confidence 21 1100 00011110000 011111111111 12222 7999999999998873 22
Q ss_pred HHHhhhhccccCCCCCCC---H-H--HHHHHHHhhhccCCCccccCCCCCCCccchhHHHHHHHhhC-CCCcccccccCC
Q 035967 280 VLQLLKNLRFHSHGKEIT---D-A--DILQWANAKVRISGSQSHMNSFKDKSLADGIFFLELLSAVQ-PRAVNWSLVTKG 352 (381)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~---~-~--~lL~W~~~~~~~~~~~~~i~nF~d~sw~dG~~~~aLi~~~~-P~~id~~~~~~~ 352 (381)
-.+.+.+... ++=++.+ + + .---|.+...-.. .|+||- .+|+||+-+..-+..+- |..|++..|...
T Consensus 358 ~qe~l~~~~~-~eI~e~d~e~efear~~Tf~l~~~~vsp----~i~~l~-gd~Rdql~~lq~l~k~l~p~tv~~~~vk~~ 431 (612)
T COG5069 358 GQEPLEEEEK-PEIEEFDAEGEFEARVFTFWLNSLDVSP----EITNLF-GDLRDQLILLQALSKKLMPMTVTHKLVKKQ 431 (612)
T ss_pred ccchhhhhcc-cccCCcchhhHHHHHHHHHHHHHhcCCh----hhhhhc-ccHHHHHHHHHHHHhhcCCceechhhhccc
Confidence 2333322110 0001111 1 2 2556988766442 699998 69999999888777777 999999988755
Q ss_pred C------CccchhhhHHHhhhcccc
Q 035967 353 V------TGMFSSNHTRCAVTLIGN 371 (381)
Q Consensus 353 ~------~~~~~~~n~~~a~~~a~~ 371 (381)
. +.-..++|+.||.++...
T Consensus 432 ~asG~E~~rfka~en~nyavdlG~~ 456 (612)
T COG5069 432 PASGIEENRFKAFENENYAVDLGIT 456 (612)
T ss_pred ccccchhhhhhhhcccchhhhhhhh
Confidence 3 344567888888776544
No 7
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=99.93 E-value=1.4e-26 Score=244.33 Aligned_cols=164 Identities=25% Similarity=0.408 Sum_probs=149.1
Q ss_pred CCCchHHHhhHHHHHHHHHHcCCeEeccCCCcccCCccchhHHHHHHHHHHHHHHhcccccCcccccccCCCchhhhhhC
Q 035967 21 LLNPWERNENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHLVLGVISQIIKIQLLADLNLKKTPQLLQLVDDSKDVEELMS 100 (381)
Q Consensus 21 ~~~r~~~~eN~~~al~~~k~~gi~lvnI~~~dI~dg~~~liLgLIWqII~~~~l~~i~~~~~p~l~~l~~~~e~~~~~~~ 100 (381)
..+|+|++||++.++.|++..|+++++||+++|+|||.++++|++|+||+.+-+.+++.. . .
T Consensus 79 ~~~r~hk~En~~~~l~~~~sk~v~~~~iga~eivd~n~~~~l~~i~tlilr~~i~~is~~-----------~-------e 140 (890)
T KOG0035|consen 79 GKMRVHKLENVNKALVFIESKGVKLVSIGAEEIVDGNLKLTLGLIWTLILRFAIQDISVE-----------C-------E 140 (890)
T ss_pred CccchhhhccccceEEEeccccccccccchhhhcCcchhhhhHHHHHhhccccccchhhh-----------c-------c
Confidence 479999999999999999999999999999999999999999999999999998877632 1 1
Q ss_pred CChHHHHHHHHHHHhhhcCCccccccccccccchHHHHHHHHHhCCCCCC-CCcCCCCCHHHHHHHHHHhHHh-hCCccc
Q 035967 101 LPPEKILLRWMNFHLKKAGYKKIVTNFSSDIKDGEAYANLLNVLAPEHSN-PSTLAVKNPLQRAKLILEHADR-MGCRRY 178 (381)
Q Consensus 101 ~s~e~~LL~Wvn~~l~~~g~~~~I~nF~~d~~DG~~l~aLl~~~~p~~~~-~~~~~~~d~~~na~~a~~~Ae~-Lgi~~~ 178 (381)
.++...++.||+..+..+. ...|.||+++|+||.+||+++|+++|+++| ++.++++++.+|.+.||++|++ +|||+.
T Consensus 141 ~~a~egllLwcq~~Ta~y~-~v~v~nF~~sw~~gl~f~A~ih~~Rpdli~~y~~lt~~~~~~n~~~A~~iAek~l~i~r~ 219 (890)
T KOG0035|consen 141 LSAKEGLLLWCQRKTAPYS-NVNVQNFHTSWKDGLAFCALIHRHRPDLIDQYDKLTKQDPVENLNLAFDIAEKFLGIPRL 219 (890)
T ss_pred hhhhhhhhhheecccCCcc-ccccccceecccchHHHHHHHHhcChhhhhhhhhcCccchhHHhhhhhhhhhhcCCcccc
Confidence 2577889999999887553 348999999999999999999999999999 9999999999999999999998 999999
Q ss_pred ccccccccC-CC--chhHHHHHHHhhhH
Q 035967 179 LTAKDIVEG-SP--NLNLAFVAHIFQHR 203 (381)
Q Consensus 179 L~peDI~~~-~~--k~il~~va~lf~~~ 203 (381)
|++||++.. .| +.+|||++++|+.+
T Consensus 220 ld~ed~~~~~~pde~aimtyv~~~~~~f 247 (890)
T KOG0035|consen 220 LDAEDIVEAAIPDEKAIMTYVSSYYHAF 247 (890)
T ss_pred cCccccccCCCCchhhhhhhhhhccccc
Confidence 999999876 34 56999999999988
No 8
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=99.87 E-value=1.6e-23 Score=221.34 Aligned_cols=186 Identities=25% Similarity=0.398 Sum_probs=156.6
Q ss_pred hHHHHHHHHHHHhh-hcCCccccccccccccchHHHHHHHHHhCCCCCCCCcCCCCCHHHHHHHHHHhHHhhCCcccccc
Q 035967 103 PEKILLRWMNFHLK-KAGYKKIVTNFSSDIKDGEAYANLLNVLAPEHSNPSTLAVKNPLQRAKLILEHADRMGCRRYLTA 181 (381)
Q Consensus 103 ~e~~LL~Wvn~~l~-~~g~~~~I~nF~~d~~DG~~l~aLl~~~~p~~~~~~~~~~~d~~~na~~a~~~Ae~Lgi~~~L~p 181 (381)
+.+.+..|||.|+. +++. .|-+...|++||..+.-++..+.++.++.
T Consensus 28 q~kTft~W~~s~L~ir~~s--~ie~~e~D~~n~lk~~~l~ev~~~e~l~~------------------------------ 75 (890)
T KOG0035|consen 28 QLKTFTKWCNSKLRIRAGS--SIEEIEEDFSNGLKLLILLEVISGENLPP------------------------------ 75 (890)
T ss_pred hccccccccchhhhhcccC--ccchhhhhhhhhhhhhhhcccccCCccCC------------------------------
Confidence 46778999999998 5543 68888899999999999999988887642
Q ss_pred cccccCCCchhHHHHHHHhhhHHHHHHhhcccCCCcccccccCCCCCCCchhhhhhHHHHHHHhhhcCeeeeecCCCccc
Q 035967 182 KDIVEGSPNLNLAFVAHIFQHRWVLLETLDKLSPGIVNWKIANKPPIKLPFRKVENCNQVVKIGKQLKFSLVNIAGNDIV 261 (381)
Q Consensus 182 eDI~~~~~k~il~~va~lf~~~~~ll~~~~ki~pg~v~w~~~~~~p~~~~~~~~eN~n~~~~~~~~~~~~lvni~~~dI~ 261 (381)
+ + ..++++|++||.|.++.+.+.-|+.+++|++++|+
T Consensus 76 ----------------------------------~-------~--~~~~r~hk~En~~~~l~~~~sk~v~~~~iga~eiv 112 (890)
T KOG0035|consen 76 ----------------------------------P-------T--RGKMRVHKLENVNKALVFIESKGVKLVSIGAEEIV 112 (890)
T ss_pred ----------------------------------C-------C--CCccchhhhccccceEEEeccccccccccchhhhc
Confidence 1 0 11679999999999999999999999999999999
Q ss_pred CCcchhHHHHHHHHHHHHHHHhhhhccccCCCCCCCH-HHHHHHHHhhhccCCCccccCCCCCCCccchhHHHHHHHhhC
Q 035967 262 QGNKKLILALLWQMMRYNVLQLLKNLRFHSHGKEITD-ADILQWANAKVRISGSQSHMNSFKDKSLADGIFFLELLSAVQ 340 (381)
Q Consensus 262 dgn~kliLgLiW~li~~~~~~~~~~~~~~~~~~~~~~-~~lL~W~~~~~~~~~~~~~i~nF~d~sw~dG~~~~aLi~~~~ 340 (381)
|||.++++|++|+++....+.-+.. +...+. +.+|.||+++|.+| +.+.|.||+ +||.||.+|||++|++|
T Consensus 113 d~n~~~~l~~i~tlilr~~i~~is~------~~e~~a~egllLwcq~~Ta~y-~~v~v~nF~-~sw~~gl~f~A~ih~~R 184 (890)
T KOG0035|consen 113 DGNLKLTLGLIWTLILRFAIQDISV------ECELSAKEGLLLWCQRKTAPY-SNVNVQNFH-TSWKDGLAFCALIHRHR 184 (890)
T ss_pred CcchhhhhHHHHHhhccccccchhh------hcchhhhhhhhhheecccCCc-cccccccce-ecccchHHHHHHHHhcC
Confidence 9999999999999997655433221 112333 45999999999999 589999999 99999999999999999
Q ss_pred CCCcc-cccccCCCCccchhhhHHHhhhccccccch
Q 035967 341 PRAVN-WSLVTKGVTGMFSSNHTRCAVTLIGNSSML 375 (381)
Q Consensus 341 P~~id-~~~~~~~~~~~~~~~n~~~a~~~a~~~~~~ 375 (381)
|+++| |+.++++ +..+|.+.|+++||.-..+
T Consensus 185 pdli~~y~~lt~~----~~~~n~~~A~~iAek~l~i 216 (890)
T KOG0035|consen 185 PDLIDQYDKLTKQ----DPVENLNLAFDIAEKFLGI 216 (890)
T ss_pred hhhhhhhhhcCcc----chhHHhhhhhhhhhhcCCc
Confidence 99999 9988776 7889999999999986544
No 9
>smart00033 CH Calponin homology domain. Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.
Probab=99.67 E-value=7.4e-17 Score=131.28 Aligned_cols=101 Identities=43% Similarity=0.665 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHhhhcCCccccccccccccchHHHHHHHHHhCCCCCCCCcCCCCCHHHHHHHHHHhHHhhCCcccccccc
Q 035967 104 EKILLRWMNFHLKKAGYKKIVTNFSSDIKDGEAYANLLNVLAPEHSNPSTLAVKNPLQRAKLILEHADRMGCRRYLTAKD 183 (381)
Q Consensus 104 e~~LL~Wvn~~l~~~g~~~~I~nF~~d~~DG~~l~aLl~~~~p~~~~~~~~~~~d~~~na~~a~~~Ae~Lgi~~~L~peD 183 (381)
++.+++|+|.+++..+ ...++||.++|+||.+||+|++.+.|+.++...
T Consensus 2 ~~~l~~Win~~l~~~~-~~~v~~~~~~l~dG~~L~~L~~~l~p~~i~~~~------------------------------ 50 (103)
T smart00033 2 EKTLLRWVNSLLAEYG-KPPVTNFSSDLSDGVALCKLLNSLSPGSVDKKK------------------------------ 50 (103)
T ss_pred hHHHHHHHHHHcccCC-CCcHHHHHHHHccHHHHHHHHHHHCCCcCChhh------------------------------
Confidence 6789999999998653 247999999999999999999999998875311
Q ss_pred cccCCCchhHHHHHHHhhhHHHHHHhhcccCCCcccccccCCCCCCCchhhhhhHHHHHHHhhhcCeeeeecCCCcccCC
Q 035967 184 IVEGSPNLNLAFVAHIFQHRWVLLETLDKLSPGIVNWKIANKPPIKLPFRKVENCNQVVKIGKQLKFSLVNIAGNDIVQG 263 (381)
Q Consensus 184 I~~~~~k~il~~va~lf~~~~~ll~~~~ki~pg~v~w~~~~~~p~~~~~~~~eN~n~~~~~~~~~~~~lvni~~~dI~dg 263 (381)
+. +| +.++++++|++++++++++.|+..+.++++||++|
T Consensus 51 ---------------------------------------~~-~~-~~~~~~~~Ni~~~l~~~~~~g~~~~~~~~~Dl~~~ 89 (103)
T smart00033 51 ---------------------------------------VN-AS-LSRFKKIENINLALSFAEKLGGKLVLFEPEDLVEG 89 (103)
T ss_pred ---------------------------------------cc-cc-ccHHHHHHhHHHHHHHHHHcCCeeeccCHHHHhhc
Confidence 11 12 45799999999999999999988999999999999
Q ss_pred cchhHHHHHHHHHH
Q 035967 264 NKKLILALLWQMMR 277 (381)
Q Consensus 264 n~kliLgLiW~li~ 277 (381)
+ |.+++++|+|++
T Consensus 90 ~-k~~~~v~~~l~~ 102 (103)
T smart00033 90 N-KLILGVIWTLIL 102 (103)
T ss_pred c-hHHHHHHHHHHh
Confidence 9 999999999985
No 10
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []. It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....
Probab=99.64 E-value=6.9e-16 Score=126.73 Aligned_cols=100 Identities=35% Similarity=0.592 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHhhhcCCccccccccccccchHHHHHHHHHhCCCCCCCCcCCCC-----CHHHHHHHHHHhHHh-hCCcc
Q 035967 104 EKILLRWMNFHLKKAGYKKIVTNFSSDIKDGEAYANLLNVLAPEHSNPSTLAVK-----NPLQRAKLILEHADR-MGCRR 177 (381)
Q Consensus 104 e~~LL~Wvn~~l~~~g~~~~I~nF~~d~~DG~~l~aLl~~~~p~~~~~~~~~~~-----d~~~na~~a~~~Ae~-Lgi~~ 177 (381)
|+.+++|+|.++...+...+|+||.+||+||.+||.|++.+.|+.+++..+.+. +..+|++.+++.+++ +|+|.
T Consensus 1 e~~ll~Win~~l~~~~~~~~v~~~~~~l~dG~~L~~Li~~l~p~~i~~~~~~~~~~~~~~~~~Ni~~~l~~~~~~lg~~~ 80 (108)
T PF00307_consen 1 EKELLKWINSHLEKYGKGRRVTNFSEDLRDGVVLCKLINKLFPGTIDLKKINPNLKSPFDKLENIELALEAAEKKLGIPP 80 (108)
T ss_dssp HHHHHHHHHHHHTTSTTTSTCSSTSGGGTTSHHHHHHHHHHSTTSSSGGGSSTSSSSHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred CHHHHHHHHHHcccccCCCCcCcHHHHhcCHHHHHHHHHHHhhccchhhhccccchhhhHHHHHHHHHHHHHHHHcCCCC
Confidence 578999999999866434589999999999999999999999999988777443 789999999999998 99999
Q ss_pred cccccccc-cCCCchhHHHHHHHhhhH
Q 035967 178 YLTAKDIV-EGSPNLNLAFVAHIFQHR 203 (381)
Q Consensus 178 ~L~peDI~-~~~~k~il~~va~lf~~~ 203 (381)
.++|+||. .++++.++.|+++||+.|
T Consensus 81 ~~~~~dl~~~~~~~~vl~~l~~l~~~~ 107 (108)
T PF00307_consen 81 LLSPEDLVEKGDEKSVLSFLWQLFRYF 107 (108)
T ss_dssp TS-HHHHHSTT-HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 99999999 788899999999999865
No 11
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).
Probab=99.60 E-value=1.7e-15 Score=124.24 Aligned_cols=100 Identities=32% Similarity=0.529 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHHhhhcCCccccccccccccchHHHHHHHHHhCCCCCCCCc---CCCCCHHHHHHHHHHhHHhhCCccc-
Q 035967 103 PEKILLRWMNFHLKKAGYKKIVTNFSSDIKDGEAYANLLNVLAPEHSNPST---LAVKNPLQRAKLILEHADRMGCRRY- 178 (381)
Q Consensus 103 ~e~~LL~Wvn~~l~~~g~~~~I~nF~~d~~DG~~l~aLl~~~~p~~~~~~~---~~~~d~~~na~~a~~~Ae~Lgi~~~- 178 (381)
+++.+++|+|.++...+. +.++||.++|+||++||+|++.+.|+.++... ....+..+|++.+++.|+++|+|..
T Consensus 2 ~~~~l~~Win~~l~~~~~-~~v~~~~~~l~dG~~L~~Ll~~~~p~~~~~~~~~~~~~~~~~~Ni~~~l~~~~~~gi~~~~ 80 (107)
T cd00014 2 QKEELLRWINKVLGEYGP-VTINNFSTDLKDGIALCKLLNSLSPDLIDKKKINPLSRFKRLENINLALNFAEKLGVPVVN 80 (107)
T ss_pred hHHHHHHHHHHHhccCCC-ccHHHHHHHHhchHHHHHHHHHHCccccccccccccchhhHHHHHHHHHHHHHHcCCceec
Confidence 578899999999986543 36999999999999999999999999987654 4567789999999999999999999
Q ss_pred ccccccc-cCCCchhHHHHHHHhhhH
Q 035967 179 LTAKDIV-EGSPNLNLAFVAHIFQHR 203 (381)
Q Consensus 179 L~peDI~-~~~~k~il~~va~lf~~~ 203 (381)
++|+||. .++++.+++|+.+|++.+
T Consensus 81 ~~~~Dl~~~~n~~~vl~~l~~l~~~~ 106 (107)
T cd00014 81 FDAEDLVEDGDEKLVLGLLWSLIRKF 106 (107)
T ss_pred cCHHHHhhCCCceeeHHHHHHHHHhh
Confidence 9999999 889999999999999864
No 12
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []. It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....
Probab=99.05 E-value=3.1e-10 Score=92.98 Aligned_cols=73 Identities=15% Similarity=0.398 Sum_probs=63.6
Q ss_pred HHHHHHHHHhhhccCCCccccCCCCCCCccchhHHHHHHHhhCCCCcccccccCCC-CccchhhhHHHhhhcccc
Q 035967 298 DADILQWANAKVRISGSQSHMNSFKDKSLADGIFFLELLSAVQPRAVNWSLVTKGV-TGMFSSNHTRCAVTLIGN 371 (381)
Q Consensus 298 ~~~lL~W~~~~~~~~~~~~~i~nF~d~sw~dG~~~~aLi~~~~P~~id~~~~~~~~-~~~~~~~n~~~a~~~a~~ 371 (381)
|++|++|+|..+..++++.+|+||. ++|+||.+||+|++++.|+.++++.+.+.. +..+..+|++.|++.|++
T Consensus 1 e~~ll~Win~~l~~~~~~~~v~~~~-~~l~dG~~L~~Li~~l~p~~i~~~~~~~~~~~~~~~~~Ni~~~l~~~~~ 74 (108)
T PF00307_consen 1 EKELLKWINSHLEKYGKGRRVTNFS-EDLRDGVVLCKLINKLFPGTIDLKKINPNLKSPFDKLENIELALEAAEK 74 (108)
T ss_dssp HHHHHHHHHHHHTTSTTTSTCSSTS-GGGTTSHHHHHHHHHHSTTSSSGGGSSTSSSSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcccccCCCCcCcHH-HHhcCHHHHHHHHHHHhhccchhhhccccchhhhHHHHHHHHHHHHHHH
Confidence 4679999999999874457899997 899999999999999999999999984321 677899999999998877
No 13
>smart00033 CH Calponin homology domain. Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.
Probab=99.03 E-value=1.1e-10 Score=94.63 Aligned_cols=74 Identities=19% Similarity=0.404 Sum_probs=64.7
Q ss_pred HHHHHHHHHhhhccCCCccccCCCCCCCccchhHHHHHHHhhCCCCcccccccCCCCccchhhhHHHhhhcccccc
Q 035967 298 DADILQWANAKVRISGSQSHMNSFKDKSLADGIFFLELLSAVQPRAVNWSLVTKGVTGMFSSNHTRCAVTLIGNSS 373 (381)
Q Consensus 298 ~~~lL~W~~~~~~~~~~~~~i~nF~d~sw~dG~~~~aLi~~~~P~~id~~~~~~~~~~~~~~~n~~~a~~~a~~~~ 373 (381)
++++++|+|+.+++++ +..++||+ ++|+||.+||+|+|.+.|+.+++..+.+..+..+..+|+.+|++.|++.+
T Consensus 2 ~~~l~~Win~~l~~~~-~~~v~~~~-~~l~dG~~L~~L~~~l~p~~i~~~~~~~~~~~~~~~~Ni~~~l~~~~~~g 75 (103)
T smart00033 2 EKTLLRWVNSLLAEYG-KPPVTNFS-SDLSDGVALCKLLNSLSPGSVDKKKVNASLSRFKKIENINLALSFAEKLG 75 (103)
T ss_pred hHHHHHHHHHHcccCC-CCcHHHHH-HHHccHHHHHHHHHHHCCCcCChhhccccccHHHHHHhHHHHHHHHHHcC
Confidence 5679999999999874 46899999 79999999999999999999998776644467788999999999998864
No 14
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).
Probab=98.75 E-value=4.2e-09 Score=86.13 Aligned_cols=69 Identities=39% Similarity=0.634 Sum_probs=63.3
Q ss_pred CcccccCCCCcccccccCCCCCCchHHHhhHHHHHHHHHHcCCeEeccCCCccc-CCccchhHHHHHHHHHHH
Q 035967 1 KLINVAVPGTIDERAINTKRLLNPWERNENHTLCLNSAKAIGCTVVNIGTQDFI-EGRRHLVLGVISQIIKIQ 72 (381)
Q Consensus 1 kl~n~~~p~tid~r~in~~~~~~r~~~~eN~~~al~~~k~~gi~lvnI~~~dI~-dg~~~liLgLIWqII~~~ 72 (381)
+|+|...|++++.+..+ +.+++++++|++.+++++++.|+...++.++||+ +||.+.|++++|+|+++|
T Consensus 37 ~Ll~~~~p~~~~~~~~~---~~~~~~~~~Ni~~~l~~~~~~gi~~~~~~~~Dl~~~~n~~~vl~~l~~l~~~~ 106 (107)
T cd00014 37 KLLNSLSPDLIDKKKIN---PLSRFKRLENINLALNFAEKLGVPVVNFDAEDLVEDGDEKLVLGLLWSLIRKF 106 (107)
T ss_pred HHHHHHCcccccccccc---ccchhhHHHHHHHHHHHHHHcCCceeccCHHHHhhCCCceeeHHHHHHHHHhh
Confidence 47889999999876654 6889999999999999999999998889999999 999999999999999987
No 15
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins.
Probab=98.33 E-value=1.2e-07 Score=75.14 Aligned_cols=66 Identities=14% Similarity=0.166 Sum_probs=55.0
Q ss_pred HHHhhhccCCCccccCCCCCCCccchhHHHHHHHhhCCCCccccccc--CCCCccchhhhHHHhhhccccc
Q 035967 304 WANAKVRISGSQSHMNSFKDKSLADGIFFLELLSAVQPRAVNWSLVT--KGVTGMFSSNHTRCAVTLIGNS 372 (381)
Q Consensus 304 W~~~~~~~~~~~~~i~nF~d~sw~dG~~~~aLi~~~~P~~id~~~~~--~~~~~~~~~~n~~~a~~~a~~~ 372 (381)
|++.....++ ..|.||+ .|++||.++++|||.+.|++++++.+. +..|-.+.+.|.....+.+++.
T Consensus 1 ~~~~~~~~~~--~~v~dl~-~~l~DG~~Lc~Lih~Y~P~~l~~~~I~~~~~mS~~~~l~N~~ll~~~c~~~ 68 (85)
T PF11971_consen 1 WVNARCAPYF--PPVEDLT-QDLSDGRALCALIHFYCPQLLPLEDICLKTTMSQADSLYNLQLLNSFCQSH 68 (85)
T ss_pred CCCcccCCCC--cchhhhh-hhhccHHHHHHHHHHhCcceecHhHcccccchHHHHhhhhHHHHHHHHHHH
Confidence 5666666653 6899999 899999999999999999999999886 4447888899998888777665
No 16
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins.
Probab=98.32 E-value=2.1e-07 Score=73.70 Aligned_cols=65 Identities=18% Similarity=0.347 Sum_probs=54.5
Q ss_pred cccccccccccchHHHHHHHHHhCCCCCCCCcC------CCCCHHHHHHHHHHhHHh-hCCcc-ccccccccc
Q 035967 122 KIVTNFSSDIKDGEAYANLLNVLAPEHSNPSTL------AVKNPLQRAKLILEHADR-MGCRR-YLTAKDIVE 186 (381)
Q Consensus 122 ~~I~nF~~d~~DG~~l~aLl~~~~p~~~~~~~~------~~~d~~~na~~a~~~Ae~-Lgi~~-~L~peDI~~ 186 (381)
..|.||+.||+||.++|+|+|.+.|..++++.+ +..+...|...+.+.+++ ||... .++|||+..
T Consensus 11 ~~v~dl~~~l~DG~~Lc~Lih~Y~P~~l~~~~I~~~~~mS~~~~l~N~~ll~~~c~~~l~~~~~~l~~edl~~ 83 (85)
T PF11971_consen 11 PPVEDLTQDLSDGRALCALIHFYCPQLLPLEDICLKTTMSQADSLYNLQLLNSFCQSHLGFSCCHLEPEDLLY 83 (85)
T ss_pred cchhhhhhhhccHHHHHHHHHHhCcceecHhHcccccchHHHHhhhhHHHHHHHHHHHcCCCcCcCCHHHHhc
Confidence 479999999999999999999999999987443 345778999999999986 86644 569999864
No 17
>KOG0518 consensus Actin-binding cytoskeleton protein, filamin [Cytoskeleton]
Probab=98.01 E-value=2.2e-07 Score=100.14 Aligned_cols=170 Identities=12% Similarity=0.016 Sum_probs=122.1
Q ss_pred cccccccCCCCCCchHHHhhHHHHHHHHHHcCCeEeccCCCcccCCccchhHHHHHHHHHHHHHHhcccccCcccccccC
Q 035967 11 IDERAINTKRLLNPWERNENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHLVLGVISQIIKIQLLADLNLKKTPQLLQLVD 90 (381)
Q Consensus 11 id~r~in~~~~~~r~~~~eN~~~al~~~k~~gi~lvnI~~~dI~dg~~~liLgLIWqII~~~~l~~i~~~~~p~l~~l~~ 90 (381)
.|-.+++++.|. +|+++|++.|+++....+.+++||++.+|+|++.+++++++|+++.+|-...-..+..| .+
T Consensus 69 ~~~skv~~~~p~--~q~~~~v~~a~~~ft~d~r~~~nigs~hivd~v~~~~g~~~~~~v~~~~dg~y~~k~~p-----~e 141 (1113)
T KOG0518|consen 69 VDTSKVKKKGPG--IQGLHNVREALNKFTVDNRKETNIGSAHIVDHVVKLIGSLTWTLVQDYGDGIYKTKRTP-----KE 141 (1113)
T ss_pred cccceeEEecCC--ccCcchhhhhhhhhhhccceeeccCCcccccccccccccceeEeeeccCCcceeeecCc-----hh
Confidence 377788887666 89999999999999977899999999999999999999999999998721111111111 01
Q ss_pred CCchhhhhhCCChHHHHHHHHHHHhhhcCCccccccccccccchHHHHHHHHHhCCCCC-CCCcCCCCCHHHHHHHHHHh
Q 035967 91 DSKDVEELMSLPPEKILLRWMNFHLKKAGYKKIVTNFSSDIKDGEAYANLLNVLAPEHS-NPSTLAVKNPLQRAKLILEH 169 (381)
Q Consensus 91 ~~e~~~~~~~~s~e~~LL~Wvn~~l~~~g~~~~I~nF~~d~~DG~~l~aLl~~~~p~~~-~~~~~~~~d~~~na~~a~~~ 169 (381)
.++ -..|..+..|-...+. ...+.+|++||.||.+|.+++++-+++.+ .+....+...++|++.+++-
T Consensus 142 ~~~-------h~~e~~~~e~~~~~sP----~~~~v~~~td~n~~~Alg~~le~~~vg~p~~f~v~~~Ga~~gnl~~a~~g 210 (1113)
T KOG0518|consen 142 KGE-------HEVEVLYDEKPVPASP----FVVKVNEGTDWNDVQALGPGLESARVGKPNVFEVETPGAGQGNLEVAVEG 210 (1113)
T ss_pred ccc-------hhhhhhhcccccccCC----ceeccccccCcccceEeccchhhcccCCCceeEEecCCccccceeeeecC
Confidence 111 1344555555443321 23689999999999999999999999987 46666677888999999999
Q ss_pred HHh-hCCcccccc----cccccCCC--chhHHHHHH
Q 035967 170 ADR-MGCRRYLTA----KDIVEGSP--NLNLAFVAH 198 (381)
Q Consensus 170 Ae~-Lgi~~~L~p----eDI~~~~~--k~il~~va~ 198 (381)
+.+ +-.++.+.+ .++....+ -++++|+.+
T Consensus 211 pse~~~~~~di~~g~c~veyip~~~gd~sv~~~~gg 246 (1113)
T KOG0518|consen 211 PSEALTVIPDIKPGSCSVEYIPPEPGDYSVNTYYGG 246 (1113)
T ss_pred hhhhcccccccCCCcceeeecCCCCCceEEeeeecc
Confidence 987 444555555 33333333 357777655
No 18
>KOG0518 consensus Actin-binding cytoskeleton protein, filamin [Cytoskeleton]
Probab=97.93 E-value=7.8e-07 Score=96.02 Aligned_cols=135 Identities=13% Similarity=0.027 Sum_probs=99.7
Q ss_pred hhhhhhHHHHHHHhhhcCeeeeecCCCcccCCcchhHHHHHHHHHHHHHHHhhhhccccC--CCCCCCHHHHHHHHHhhh
Q 035967 232 FRKVENCNQVVKIGKQLKFSLVNIAGNDIVQGNKKLILALLWQMMRYNVLQLLKNLRFHS--HGKEITDADILQWANAKV 309 (381)
Q Consensus 232 ~~~~eN~n~~~~~~~~~~~~lvni~~~dI~dgn~kliLgLiW~li~~~~~~~~~~~~~~~--~~~~~~~~~lL~W~~~~~ 309 (381)
.++.+|++.|+..-...+...+||++.+|+|++.++++|++|+++..|...+- +..... .|....+-....|....+
T Consensus 81 ~q~~~~v~~a~~~ft~d~r~~~nigs~hivd~v~~~~g~~~~~~v~~~~dg~y-~~k~~p~e~~~h~~e~~~~e~~~~~s 159 (1113)
T KOG0518|consen 81 IQGLHNVREALNKFTVDNRKETNIGSAHIVDHVVKLIGSLTWTLVQDYGDGIY-KTKRTPKEKGEHEVEVLYDEKPVPAS 159 (1113)
T ss_pred ccCcchhhhhhhhhhhccceeeccCCcccccccccccccceeEeeeccCCcce-eeecCchhccchhhhhhhcccccccC
Confidence 68889999999988866699999999999999999999999999977732221 111100 011111112444444444
Q ss_pred ccCCCccccCCCCCCCccchhHHHHHHHhhCCCCc-ccccccCCCCccchhhhHHHhhhccccccchh
Q 035967 310 RISGSQSHMNSFKDKSLADGIFFLELLSAVQPRAV-NWSLVTKGVTGMFSSNHTRCAVTLIGNSSMLW 376 (381)
Q Consensus 310 ~~~~~~~~i~nF~d~sw~dG~~~~aLi~~~~P~~i-d~~~~~~~~~~~~~~~n~~~a~~~a~~~~~~~ 376 (381)
+. +.+.||+ ++|++|.|+.+++...+|+.. .|....++ +...|+..|+.-+++..|-=
T Consensus 160 P~----~~~v~~~-td~n~~~Alg~~le~~~vg~p~~f~v~~~G----a~~gnl~~a~~gpse~~~~~ 218 (1113)
T KOG0518|consen 160 PF----VVKVNEG-TDWNDVQALGPGLESARVGKPNVFEVETPG----AGQGNLEVAVEGPSEALTVI 218 (1113)
T ss_pred Cc----eeccccc-cCcccceEeccchhhcccCCCceeEEecCC----ccccceeeeecChhhhcccc
Confidence 33 5789999 999999999999999999998 58877766 56688999999888877643
No 19
>KOG3631 consensus Alpha-parvin and related focal adhesion proteins [Cytoskeleton]
Probab=97.82 E-value=0.00011 Score=69.06 Aligned_cols=173 Identities=21% Similarity=0.260 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHhhhcCCccccccccccccchHHHHHHHHHhCCCCCCCCcC--CCCCHHHHHHHHHHhHHh-hCCcccc-
Q 035967 104 EKILLRWMNFHLKKAGYKKIVTNFSSDIKDGEAYANLLNVLAPEHSNPSTL--AVKNPLQRAKLILEHADR-MGCRRYL- 179 (381)
Q Consensus 104 e~~LL~Wvn~~l~~~g~~~~I~nF~~d~~DG~~l~aLl~~~~p~~~~~~~~--~~~d~~~na~~a~~~Ae~-Lgi~~~L- 179 (381)
-+.|+.|+|..+-.. ...|.++..|+-||.++-.|++.+..-.+....+ ++....+.++.+++.+++ |+.|.+-
T Consensus 92 ~kvLi~WiN~~L~~e--rIvVr~LeEDlfDGqilqkL~ekL~~~klev~evtqse~~QkqKLq~Vleavnr~L~~~~~q~ 169 (365)
T KOG3631|consen 92 VKVLIDWINDVLVPE--RIVVRSLEEDLFDGQILQKLFEKLAALKLEVAEVTQSEIGQKQKLQTVLEAVNRSLQLPEWQA 169 (365)
T ss_pred HHHHHHHHHHhhcch--hhhHHhhHHhhhhhHHHHHHHHHHHhhhccchhhhhhhHHHHHHHHHHHHHHHHHhcCchhhh
Confidence 478999999988532 2257899999999999999999998776654333 345566778888888886 8887642
Q ss_pred --cccccccCCCchhH---HHHHHHhhhH---------------------------------------------------
Q 035967 180 --TAKDIVEGSPNLNL---AFVAHIFQHR--------------------------------------------------- 203 (381)
Q Consensus 180 --~peDI~~~~~k~il---~~va~lf~~~--------------------------------------------------- 203 (381)
+.+-|.+.+--.++ ..+|..|...
T Consensus 170 kWsvdsIh~Kdl~ailhLLVaLa~~frapirlPdnV~v~Vvvvqk~~g~lks~~i~EqlT~~tt~l~~~~~rDaFDtLFd 249 (365)
T KOG3631|consen 170 KWSVDSIHNKDLVAILHLLVALAKHFRAPIRLPDNVQVQVVVVQKREGGLKSEKIVEQLTTYTTDLDGRPERDAFDTLFD 249 (365)
T ss_pred ccchhhhccchHHHHHHHHHHHHHHcCCCccCCCceEEEEEEEEeccccchHHHHHHHHhhhhHhhcCCCchhhHHHHHh
Confidence 23333333322222 2233333322
Q ss_pred -------------HHH-HHhhccc-----------------------CCCc-ccccccCCCCCCCchhhhhhHHHHHHHh
Q 035967 204 -------------WVL-LETLDKL-----------------------SPGI-VNWKIANKPPIKLPFRKVENCNQVVKIG 245 (381)
Q Consensus 204 -------------~~l-l~~~~ki-----------------------~pg~-v~w~~~~~~p~~~~~~~~eN~n~~~~~~ 245 (381)
+.+ -+-++|+ ..|- |--..+.-.| ...-+++.|++.|++++
T Consensus 250 ~aPdKln~VK~sli~FvNkhLnklnLeVt~LdtQFaDGV~LvLL~GlLEgyFvpL~~F~Ltp-~S~eekv~NVsfAfeLm 328 (365)
T KOG3631|consen 250 HAPDKLNVVKKSLITFVNKHLNKLNLEVTELDTQFADGVYLVLLMGLLEGYFVPLHHFYLTP-NSFEEKVHNVSFAFELM 328 (365)
T ss_pred hCcHHHHHHHHHHHHHHHHHhhhccceeehhhhhhccchHHHHHHHhhccceeecceeecCC-CCHHHHHHHHHHHHHHH
Confidence 000 0111111 1121 1122233334 33568999999999999
Q ss_pred hhcCeeeeecCCCcccCCcchhHHHHHHHHHHHH
Q 035967 246 KQLKFSLVNIAGNDIVQGNKKLILALLWQMMRYN 279 (381)
Q Consensus 246 ~~~~~~lvni~~~dI~dgn~kliLgLiW~li~~~ 279 (381)
+.-|..=.-..++||++++.|-+|-++.-|.-.|
T Consensus 329 ~D~GL~kp~~rpeDIvN~D~KSTLRvLy~LFtKy 362 (365)
T KOG3631|consen 329 KDGGLEKPKVRPEDIVNKDLKSTLRVLYNLFTKY 362 (365)
T ss_pred HccCcCCCCCChHHhhcccHHHHHHHHHHHHHhh
Confidence 9988877778999999999999999999887544
No 20
>KOG3631 consensus Alpha-parvin and related focal adhesion proteins [Cytoskeleton]
Probab=96.99 E-value=0.0016 Score=61.49 Aligned_cols=98 Identities=19% Similarity=0.273 Sum_probs=77.4
Q ss_pred hHHHHHHHHHHHhhhcCCccccccccccccchHHHHHHHHHhCCCCCCC-----CcCCCCCHHHHHHHHHHhHHhhCCc-
Q 035967 103 PEKILLRWMNFHLKKAGYKKIVTNFSSDIKDGEAYANLLNVLAPEHSNP-----STLAVKNPLQRAKLILEHADRMGCR- 176 (381)
Q Consensus 103 ~e~~LL~Wvn~~l~~~g~~~~I~nF~~d~~DG~~l~aLl~~~~p~~~~~-----~~~~~~d~~~na~~a~~~Ae~Lgi~- 176 (381)
.++.|+..||.|+.+-+. .|+++.+.|+||+.+.-|+-.+.+=.++. .+-+.++...|...||+..+.=|+.
T Consensus 258 VK~sli~FvNkhLnklnL--eVt~LdtQFaDGV~LvLL~GlLEgyFvpL~~F~Ltp~S~eekv~NVsfAfeLm~D~GL~k 335 (365)
T KOG3631|consen 258 VKKSLITFVNKHLNKLNL--EVTELDTQFADGVYLVLLMGLLEGYFVPLHHFYLTPNSFEEKVHNVSFAFELMKDGGLEK 335 (365)
T ss_pred HHHHHHHHHHHHhhhccc--eeehhhhhhccchHHHHHHHhhccceeecceeecCCCCHHHHHHHHHHHHHHHHccCcCC
Confidence 478899999999987655 69999999999998887777665544442 3334567888999999999987764
Q ss_pred ccccccccccCCCchhHHHHHHHhhh
Q 035967 177 RYLTAKDIVEGSPNLNLAFVAHIFQH 202 (381)
Q Consensus 177 ~~L~peDI~~~~~k~il~~va~lf~~ 202 (381)
+-..||||++++.|+.+-.+-.||..
T Consensus 336 p~~rpeDIvN~D~KSTLRvLy~LFtK 361 (365)
T KOG3631|consen 336 PKVRPEDIVNKDLKSTLRVLYNLFTK 361 (365)
T ss_pred CCCChHHhhcccHHHHHHHHHHHHHh
Confidence 46889999999999877776666653
No 21
>KOG2046 consensus Calponin [Cytoskeleton]
Probab=96.48 E-value=0.0073 Score=54.66 Aligned_cols=91 Identities=24% Similarity=0.364 Sum_probs=66.7
Q ss_pred ChHHHHHHHHHHHhhhcCCccccccccccccchHHHHHHHHHhCCCCCCCCcCCCCCHHHHHHHHHHhHHhhCCcccccc
Q 035967 102 PPEKILLRWMNFHLKKAGYKKIVTNFSSDIKDGEAYANLLNVLAPEHSNPSTLAVKNPLQRAKLILEHADRMGCRRYLTA 181 (381)
Q Consensus 102 s~e~~LL~Wvn~~l~~~g~~~~I~nF~~d~~DG~~l~aLl~~~~p~~~~~~~~~~~d~~~na~~a~~~Ae~Lgi~~~L~p 181 (381)
..++.++.|+...... +. ..-.||.+-++||..||.|++.+.|.....
T Consensus 25 ~~~~el~~WI~~~~~~-~~-~~~~~f~~~LKDG~iLCkl~N~l~p~~~~~------------------------------ 72 (193)
T KOG2046|consen 25 ELEKELREWIENVVLT-EL-PARGDFQDLLKDGVILCKLINKLYPGVVKK------------------------------ 72 (193)
T ss_pred HHHHHHHHHHHHhhcc-CC-CcccCHHHHHcchHHHHHHHHHhCcCcccc------------------------------
Confidence 3577899999985321 11 124789988999999999999999943211
Q ss_pred cccccCCCchhHHHHHHHhhhHHHHHHhhcccCCCcccccccCCCCCCCchhhhhhHHHHHHHhhhcCeeeeec-CCCcc
Q 035967 182 KDIVEGSPNLNLAFVAHIFQHRWVLLETLDKLSPGIVNWKIANKPPIKLPFRKVENCNQVVKIGKQLKFSLVNI-AGNDI 260 (381)
Q Consensus 182 eDI~~~~~k~il~~va~lf~~~~~ll~~~~ki~pg~v~w~~~~~~p~~~~~~~~eN~n~~~~~~~~~~~~lvni-~~~dI 260 (381)
.+ .| ++.|+++||++.-+.++++.|++-+.+ .+.|.
T Consensus 73 -----------------------------------------~~-~s-~~~f~qmEnIs~Fi~a~~~ygv~~~d~FqtvDL 109 (193)
T KOG2046|consen 73 -----------------------------------------IN-ES-KMAFVQMENISNFIKAAKKYGVPEVDLFQTVDL 109 (193)
T ss_pred -----------------------------------------cc-cc-cccHHHHHHHHHHHHHHHhcCCChhhccccccc
Confidence 11 22 678999999999999999998865433 47788
Q ss_pred cCCcchh
Q 035967 261 VQGNKKL 267 (381)
Q Consensus 261 ~dgn~kl 267 (381)
.+|....
T Consensus 110 fE~kd~~ 116 (193)
T KOG2046|consen 110 FEGKDMA 116 (193)
T ss_pred ccCCCHH
Confidence 8877544
No 22
>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function.; PDB: 2EE7_A.
Probab=96.23 E-value=0.0058 Score=54.13 Aligned_cols=98 Identities=21% Similarity=0.269 Sum_probs=63.1
Q ss_pred HHHHHHHHhhhcCCccccccccccccchHHHHHHHHHhCCCCCCCCcCCCCCHHHHHHHHHHhHHhhCCccccccccccc
Q 035967 107 LLRWMNFHLKKAGYKKIVTNFSSDIKDGEAYANLLNVLAPEHSNPSTLAVKNPLQRAKLILEHADRMGCRRYLTAKDIVE 186 (381)
Q Consensus 107 LL~Wvn~~l~~~g~~~~I~nF~~d~~DG~~l~aLl~~~~p~~~~~~~~~~~d~~~na~~a~~~Ae~Lgi~~~L~peDI~~ 186 (381)
|++|++. +. ......|+..||+||..++.+++.+.|..+++....
T Consensus 1 l~~WL~~-l~---ls~~~~n~~rDfsdG~lvAEIl~~y~p~~vdlh~y~------------------------------- 45 (158)
T PF06294_consen 1 LLKWLQS-LD---LSRPPKNIRRDFSDGYLVAEILSRYYPKLVDLHNYS------------------------------- 45 (158)
T ss_dssp HHHHHHH-S-----S--SS-HHHHHTTSHHHHHHHHHH-TTT---SS---------------------------------
T ss_pred ChHHHhc-CC---CCCCCCchHHHcccccHHHHHHHHHCCCCccccccC-------------------------------
Confidence 5799998 32 234688899999999999999999999998764332
Q ss_pred CCCchhHHHHHHHhhhHHHHHHhhcccCCCcccccccCCCCCCCchhhhhhHHHH-HHHhhhcCeeeeecCCCcccCCcc
Q 035967 187 GSPNLNLAFVAHIFQHRWVLLETLDKLSPGIVNWKIANKPPIKLPFRKVENCNQV-VKIGKQLKFSLVNIAGNDIVQGNK 265 (381)
Q Consensus 187 ~~~k~il~~va~lf~~~~~ll~~~~ki~pg~v~w~~~~~~p~~~~~~~~eN~n~~-~~~~~~~~~~lvni~~~dI~dgn~ 265 (381)
|....-.++.|=+.. -.+.+++|+.+.-=-.++|+.|..
T Consensus 46 ----------------------------------------~~~s~~~Kl~NW~~Ln~kvl~kl~~~l~~~~i~~i~~~~~ 85 (158)
T PF06294_consen 46 ----------------------------------------NGNSVAQKLNNWETLNEKVLKKLGIKLDKEDIEGIINCKP 85 (158)
T ss_dssp ------------------------------------------SSHHHHHHHHHHHHHHTTGGGT----HHHHHHHHTT-T
T ss_pred ----------------------------------------CCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCC
Confidence 113345677787777 777888888754444556788998
Q ss_pred hhHHHHHHHHHHHH
Q 035967 266 KLILALLWQMMRYN 279 (381)
Q Consensus 266 kliLgLiW~li~~~ 279 (381)
..+--|+.+|+.+-
T Consensus 86 Gaae~lL~~L~~~l 99 (158)
T PF06294_consen 86 GAAESLLYQLYTKL 99 (158)
T ss_dssp TTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 88888889888554
No 23
>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function.; PDB: 2EE7_A.
Probab=95.62 E-value=0.0053 Score=54.37 Aligned_cols=58 Identities=21% Similarity=0.401 Sum_probs=38.7
Q ss_pred HHHHHHhhhccCCCccccCCCCCCCccchhHHHHHHHhhCCCCcccccccCCCCccchhhhHH
Q 035967 301 ILQWANAKVRISGSQSHMNSFKDKSLADGIFFLELLSAVQPRAVNWSLVTKGVTGMFSSNHTR 363 (381)
Q Consensus 301 lL~W~~~~~~~~~~~~~i~nF~d~sw~dG~~~~aLi~~~~P~~id~~~~~~~~~~~~~~~n~~ 363 (381)
|++|++. ++-. +...|+. .|++||..+..|++++-|..||+....++.+..-++.|-.
T Consensus 1 l~~WL~~-l~ls---~~~~n~~-rDfsdG~lvAEIl~~y~p~~vdlh~y~~~~s~~~Kl~NW~ 58 (158)
T PF06294_consen 1 LLKWLQS-LDLS---RPPKNIR-RDFSDGYLVAEILSRYYPKLVDLHNYSNGNSVAQKLNNWE 58 (158)
T ss_dssp HHHHHHH-S--S-----SS-HH-HHHTTSHHHHHHHHHH-TTT---SS----SSHHHHHHHHH
T ss_pred ChHHHhc-CCCC---CCCCchH-HHcccccHHHHHHHHHCCCCccccccCCCCCHHHHHHHHH
Confidence 6899998 4332 4688998 7999999999999999999999999888877777877754
No 24
>KOG2046 consensus Calponin [Cytoskeleton]
Probab=92.20 E-value=0.11 Score=47.16 Aligned_cols=54 Identities=33% Similarity=0.466 Sum_probs=43.1
Q ss_pred CcccccCCCCcccccccCCCCCCchHHHhhHHHHHHHHHHcCCeEec-cCCCcccCCcc
Q 035967 1 KLINVAVPGTIDERAINTKRLLNPWERNENHTLCLNSAKAIGCTVVN-IGTQDFIEGRR 58 (381)
Q Consensus 1 kl~n~~~p~tid~r~in~~~~~~r~~~~eN~~~al~~~k~~gi~lvn-I~~~dI~dg~~ 58 (381)
||||+..|+.+- ++| .+.+.|+++||++.-+.++++.|++-+. .-+.|+.||..
T Consensus 60 kl~N~l~p~~~~--~~~--~s~~~f~qmEnIs~Fi~a~~~ygv~~~d~FqtvDLfE~kd 114 (193)
T KOG2046|consen 60 KLINKLYPGVVK--KIN--ESKMAFVQMENISNFIKAAKKYGVPEVDLFQTVDLFEGKD 114 (193)
T ss_pred HHHHHhCcCccc--ccc--cccccHHHHHHHHHHHHHHHhcCCChhhcccccccccCCC
Confidence 689999995442 333 4799999999999999999999998776 45678888753
No 25
>KOG0516 consensus Dystonin, GAS (Growth-arrest-specific protein), and related proteins [Cytoskeleton]
Probab=91.97 E-value=0.069 Score=60.81 Aligned_cols=57 Identities=26% Similarity=0.194 Sum_probs=52.3
Q ss_pred CCchHHHhhHHHHHHHHHHcCCeEec--cCCCcccCCccchhHHHHHHHHHHHHHHhcc
Q 035967 22 LNPWERNENHTLCLNSAKAIGCTVVN--IGTQDFIEGRRHLVLGVISQIIKIQLLADLN 78 (381)
Q Consensus 22 ~~r~~~~eN~~~al~~~k~~gi~lvn--I~~~dI~dg~~~liLgLIWqII~~~~l~~i~ 78 (381)
-.+++.++|+..+++++++..+.+++ |..++|.+|+++++||++|.|+.+++..++.
T Consensus 129 ~~~~~~l~n~q~~l~~~k~~~~el~~~~~~~~~~~~~~~~~~l~~~~ei~l~~Q~~~ll 187 (1047)
T KOG0516|consen 129 QERLHDLENVQAALTALKEDLAELVNFLIRDAEIKLGNPELGLGLIWEIILHFQYVKLL 187 (1047)
T ss_pred HHHHhhHHHHHhhhccchHHHHHHHHhhcccchhhccchhhhhhhHHHHHHHHHHHHhh
Confidence 35688999999999999999999999 9999999999999999999999999885543
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=89.19 E-value=0.36 Score=50.73 Aligned_cols=85 Identities=20% Similarity=0.295 Sum_probs=60.2
Q ss_pred ChHHHHHHHHHHHhhhcCCcc-ccccccccccchHHHHHHHHHhCCCCCCC----C----cCCCCCHHHHHHHHHHhHHh
Q 035967 102 PPEKILLRWMNFHLKKAGYKK-IVTNFSSDIKDGEAYANLLNVLAPEHSNP----S----TLAVKNPLQRAKLILEHADR 172 (381)
Q Consensus 102 s~e~~LL~Wvn~~l~~~g~~~-~I~nF~~d~~DG~~l~aLl~~~~p~~~~~----~----~~~~~d~~~na~~a~~~Ae~ 172 (381)
..|+.|+.=...+++.. ..+ --.||+..+.||+.+|.|.++++|..+.. + .+.-.....|.+.+++++++
T Consensus 572 ~eE~eL~~QLRk~iEtR-Lk~sLp~Dl~aALtDGViLChLaN~lRPRSV~SIHVPSPaV~klsmarcrrNVdnFLeaCRk 650 (722)
T KOG0532|consen 572 REEKELMLQLRKLIETR-LKVSLPEDLAAALTDGVILCHLANHLRPRSVASIHVPSPAVPKLSMARCRRNVDNFLEACRK 650 (722)
T ss_pred hHHHHHHHHHHHHHHHH-hcccCchhHHHHhhcchhhHhhhcccCCCCccceecCCCccchhHHHHHHHhHHHHHHHHHH
Confidence 44566665555555421 111 23688889999999999999999977642 1 12223567889999999999
Q ss_pred hCCcc--cccccccccC
Q 035967 173 MGCRR--YLTAKDIVEG 187 (381)
Q Consensus 173 Lgi~~--~L~peDI~~~ 187 (381)
+|+|- +-.|.||...
T Consensus 651 iGVpEa~lCS~~Dilq~ 667 (722)
T KOG0532|consen 651 IGVPEADLCSPMDILQK 667 (722)
T ss_pred cCCChHhhcCHHHhhhh
Confidence 99985 6778888654
No 27
>COG5199 SCP1 Calponin [Cytoskeleton]
Probab=82.52 E-value=3.3 Score=36.18 Aligned_cols=84 Identities=14% Similarity=0.229 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHHhhhcCCccccccccccccchHHHHHHHHHhCCCCCCCCc-CCCCCHHHHHHHHHHhHHhhCCcc--cc
Q 035967 103 PEKILLRWMNFHLKKAGYKKIVTNFSSDIKDGEAYANLLNVLAPEHSNPST-LAVKNPLQRAKLILEHADRMGCRR--YL 179 (381)
Q Consensus 103 ~e~~LL~Wvn~~l~~~g~~~~I~nF~~d~~DG~~l~aLl~~~~p~~~~~~~-~~~~d~~~na~~a~~~Ae~Lgi~~--~L 179 (381)
+++-...|+...+... . .+--+|-+.++||+.||.++..-.|..+.|.. -.+=-..+|....++.++++++|. +.
T Consensus 14 ~~kev~~Wie~~l~~k-~-~ppgdll~~lkdGv~lCril~ea~~~~I~yKeSkmpFVQmenIs~Fin~~~k~~vpe~elF 91 (178)
T COG5199 14 QQKEVTLWIETVLGEK-F-EPPGDLLSLLKDGVRLCRILNEASPLDIKYKESKMPFVQMENISSFINGLKKLRVPEYELF 91 (178)
T ss_pred HHHHHHHHHHHHHHhh-h-CCcccHHHHHhcchHHHHHHhhcCcccceecccCCceeeHHHHHHHHHHHHHhCCCHHHHH
Confidence 5677889999887632 1 13467888899999999999998888776632 223345789999999999999875 45
Q ss_pred cccccccCC
Q 035967 180 TAKDIVEGS 188 (381)
Q Consensus 180 ~peDI~~~~ 188 (381)
...|+-...
T Consensus 92 QT~DLFE~k 100 (178)
T COG5199 92 QTNDLFEAK 100 (178)
T ss_pred HhhhHHhhc
Confidence 555655543
No 28
>KOG3000 consensus Microtubule-binding protein involved in cell cycle control [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=81.59 E-value=3.7 Score=39.96 Aligned_cols=92 Identities=18% Similarity=0.338 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHHhhhcCCccccccccccccchHHHHHHHHHhCCCCCCC-----CcCCCCCHHHHHHHHHHhHHhhCCcc
Q 035967 103 PEKILLRWMNFHLKKAGYKKIVTNFSSDIKDGEAYANLLNVLAPEHSNP-----STLAVKNPLQRAKLILEHADRMGCRR 177 (381)
Q Consensus 103 ~e~~LL~Wvn~~l~~~g~~~~I~nF~~d~~DG~~l~aLl~~~~p~~~~~-----~~~~~~d~~~na~~a~~~Ae~Lgi~~ 177 (381)
....++.|+|..+.- ++ .+| .+...|-++|.+.+.+.|..++. .+-.+.+...|.+..-+...++|+.+
T Consensus 16 sR~E~laW~N~~l~~-n~-~kI----Ee~~tGaaycqlmd~l~p~~i~lkkVkf~A~~Ehe~i~Nfk~lQ~~f~klgi~k 89 (295)
T KOG3000|consen 16 SRLEILAWINDLLQL-NL-TKI----EELCTGAAYCQLMDMLFPPDIPLKKVKFAARLEHEYIPNFKVLQTCFNKLGIDK 89 (295)
T ss_pred chHHHHHHHHhhhhc-ch-hhh----hhhcccchhhhhhhhccCCccccccccccccccchhhhhhHHHHHHHHhcCCcc
Confidence 345588999998752 12 133 46778999999999999977654 34445677778777777778899999
Q ss_pred cccccccccCCCchhHHHHHHHh
Q 035967 178 YLTAKDIVEGSPNLNLAFVAHIF 200 (381)
Q Consensus 178 ~L~peDI~~~~~k~il~~va~lf 200 (381)
.+..++++.+...-++-|+--+.
T Consensus 90 ~v~vdkLvKg~~qDNlEF~qWfk 112 (295)
T KOG3000|consen 90 VVDVDKLVKGPFQDNLEFLQWFK 112 (295)
T ss_pred cccHHHHhcccccchHHHHHHHH
Confidence 99999999999887888654333
No 29
>KOG0516 consensus Dystonin, GAS (Growth-arrest-specific protein), and related proteins [Cytoskeleton]
Probab=79.47 E-value=0.92 Score=51.84 Aligned_cols=52 Identities=27% Similarity=0.461 Sum_probs=46.9
Q ss_pred chhhhhhHHHHHHHhhhcCeeeee--cCCCcccCCcchhHHHHHHHHHH-HHHHH
Q 035967 231 PFRKVENCNQVVKIGKQLKFSLVN--IAGNDIVQGNKKLILALLWQMMR-YNVLQ 282 (381)
Q Consensus 231 ~~~~~eN~n~~~~~~~~~~~~lvn--i~~~dI~dgn~kliLgLiW~li~-~~~~~ 282 (381)
+++.++|+..++++.++..+++++ +..++|.+|+.+++||++|.++. ++..+
T Consensus 131 ~~~~l~n~q~~l~~~k~~~~el~~~~~~~~~~~~~~~~~~l~~~~ei~l~~Q~~~ 185 (1047)
T KOG0516|consen 131 RLHDLENVQAALTALKEDLAELVNFLIRDAEIKLGNPELGLGLIWEIILHFQYVK 185 (1047)
T ss_pred HHhhHHHHHhhhccchHHHHHHHHhhcccchhhccchhhhhhhHHHHHHHHHHHH
Confidence 678999999999999998999999 99999999999999999999984 44443
No 30
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=64.28 E-value=5.1 Score=42.26 Aligned_cols=54 Identities=22% Similarity=0.255 Sum_probs=44.5
Q ss_pred cccccCCCCcccccccCCCCCCchHHHhhHHHHHHHHH-HcCCeEec-cCCCcccC
Q 035967 2 LINVAVPGTIDERAINTKRLLNPWERNENHTLCLNSAK-AIGCTVVN-IGTQDFIE 55 (381)
Q Consensus 2 l~n~~~p~tid~r~in~~~~~~r~~~~eN~~~al~~~k-~~gi~lvn-I~~~dI~d 55 (381)
|.|-..|++||.|.||..|.++.|-++.|++..+.+|. ..|+.-.. ..+.|+.|
T Consensus 46 LlnnL~p~sIdlkeIn~rpQmSqFLClkNIrtFl~~C~~~Fglr~seLF~afDLfd 101 (865)
T KOG2996|consen 46 LLNNLVPHSIDLKEINLRPQMSQFLCLKNIRTFLMFCCEKFGLRDSELFEAFDLFD 101 (865)
T ss_pred HHhhcCCCcccHHHhhcCCCccchhhHhhHHHHHHHHHHHhCCchhhhcchhhhhh
Confidence 67888999999999999999999999999999999998 34544221 66777766
No 31
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=62.51 E-value=5.6 Score=43.60 Aligned_cols=62 Identities=24% Similarity=0.425 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhhhcCCccccccccccccchHHHHHHHHHhCCCCCCC---CcCC--CCC----HHHHHHHHHHhH
Q 035967 104 EKILLRWMNFHLKKAGYKKIVTNFSSDIKDGEAYANLLNVLAPEHSNP---STLA--VKN----PLQRAKLILEHA 170 (381)
Q Consensus 104 e~~LL~Wvn~~l~~~g~~~~I~nF~~d~~DG~~l~aLl~~~~p~~~~~---~~~~--~~d----~~~na~~a~~~A 170 (381)
-..|+.|++.. . ...++.++. |+.||+++..+++.+.|..++. ..+. ..+ ...|++.++...
T Consensus 9 ~~~Lv~Wv~tf-~---~~~~~~~~~-dL~DGv~L~evL~qIDp~~F~~~~l~~i~~~~~~nw~lr~~NLk~l~~~i 79 (713)
T PF05622_consen 9 CDSLVTWVQTF-N---LSAPCSSYE-DLSDGVALAEVLHQIDPEYFNDSWLSRIKEDVGDNWRLRVSNLKKLLRNI 79 (713)
T ss_dssp HHHHHHHHTT-------SS---SHH-HHTTSHHHHHHHHHH-TTTS-HHHHTT--SGGGG-SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC-C---CCCCcCCHH-HccchHHHHHHHHHhCccccCcHHhhcCCCCCCccHHHHHHHHHHHHHHH
Confidence 45699999983 2 223677775 8999999999999999998762 2221 112 357777766544
No 32
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=60.66 E-value=12 Score=39.61 Aligned_cols=71 Identities=15% Similarity=0.147 Sum_probs=54.0
Q ss_pred HHHHHHHhhhHHHHHHhhcccCCCcccccccCCCCCCCchhhhhhHHHHHHHhhh-cCeeee-ecCCCcccCC
Q 035967 193 LAFVAHIFQHRWVLLETLDKLSPGIVNWKIANKPPIKLPFRKVENCNQVVKIGKQ-LKFSLV-NIAGNDIVQG 263 (381)
Q Consensus 193 l~~va~lf~~~~~ll~~~~ki~pg~v~w~~~~~~p~~~~~~~~eN~n~~~~~~~~-~~~~lv-ni~~~dI~dg 263 (381)
+.=+||-.....+||++++.+.|+.+|-+.++..|.-..|-|..|+++-+.++.. +|+.-. =..+.|+.|-
T Consensus 30 v~dlAq~LRDGvLLCqLlnnL~p~sIdlkeIn~rpQmSqFLClkNIrtFl~~C~~~Fglr~seLF~afDLfdv 102 (865)
T KOG2996|consen 30 VFDLAQALRDGVLLCQLLNNLVPHSIDLKEINLRPQMSQFLCLKNIRTFLMFCCEKFGLRDSELFEAFDLFDV 102 (865)
T ss_pred HHHHHHHHhhhhHHHHHHhhcCCCcccHHHhhcCCCccchhhHhhHHHHHHHHHHHhCCchhhhcchhhhhhh
Confidence 3345666677799999999999999999999987766789999999999999974 665311 1235555543
No 33
>cd08533 SAM_PNT-ETS-1,2 Sterile alpha motif (SAM)/Pointed domain of ETS-1,2 family. SAM Pointed domain of ETS-1,2 family of transcriptional activators is a protein-protein interaction domain. It carries a kinase docking site and mediates interaction between ETS transcriptional activators and protein kinases. This group of transcriptional factors is involved in the Ras/MAP kinase signaling pathway. MAP kinases phosphorylate the transcription factors. Phosphorylated factors then recruit coactivators and enhance transactivation. Members of this group play a role in regulation of different embryonic developmental processes. ETS-1,2 transcriptional activators are proto-oncogenes involved in malignant transformation and tumor progression. They are potential molecular targets for selective cancer therapy.
Probab=50.58 E-value=19 Score=27.46 Aligned_cols=37 Identities=19% Similarity=0.183 Sum_probs=27.7
Q ss_pred CHHHHHHHHHhhhccCC-CccccCCCCCCCccchhHHHHHHH
Q 035967 297 TDADILQWANAKVRISG-SQSHMNSFKDKSLADGIFFLELLS 337 (381)
Q Consensus 297 ~~~~lL~W~~~~~~~~~-~~~~i~nF~d~sw~dG~~~~aLi~ 337 (381)
|+.++..|++-.+.+|+ .++.+.+|. -+|+++|+|=+
T Consensus 8 t~~~V~~WL~Wa~~ef~L~~v~~~~F~----m~Gk~LC~ls~ 45 (71)
T cd08533 8 TETHVRQWLLWAVNEFSLEGVNFQKFC----MSGRDLCALGK 45 (71)
T ss_pred CHHHHHHHHHHHHHHcCCCCCCcccCC----CCHHHHHcCCH
Confidence 56778889988888875 245666775 68999998754
No 34
>COG5199 SCP1 Calponin [Cytoskeleton]
Probab=49.86 E-value=21 Score=31.26 Aligned_cols=77 Identities=22% Similarity=0.379 Sum_probs=51.7
Q ss_pred HHhhhHHHHHHhhcccCCCcccccccCCCCCCCchhhhhhHHHHHHHhhhcCeeee-ecCCCcccC-CcchhHHHHHHHH
Q 035967 198 HIFQHRWVLLETLDKLSPGIVNWKIANKPPIKLPFRKVENCNQVVKIGKQLKFSLV-NIAGNDIVQ-GNKKLILALLWQM 275 (381)
Q Consensus 198 ~lf~~~~~ll~~~~ki~pg~v~w~~~~~~p~~~~~~~~eN~n~~~~~~~~~~~~lv-ni~~~dI~d-gn~kliLgLiW~l 275 (381)
+++....+||+.+....|+-+.||.- +|+|-.+||+..-+.++++.++.=- -.+-.|+.+ .+...++--+.+|
T Consensus 38 ~~lkdGv~lCril~ea~~~~I~yKeS-----kmpFVQmenIs~Fin~~~k~~vpe~elFQT~DLFE~kd~~qV~~~l~sl 112 (178)
T COG5199 38 SLLKDGVRLCRILNEASPLDIKYKES-----KMPFVQMENISSFINGLKKLRVPEYELFQTNDLFEAKDLRQVVICLYSL 112 (178)
T ss_pred HHHhcchHHHHHHhhcCcccceeccc-----CCceeeHHHHHHHHHHHHHhCCCHHHHHHhhhHHhhcCHHHHHHHHHHH
Confidence 55677799999999999999888753 5788899999999999999764200 012233333 2344555444554
Q ss_pred HHHH
Q 035967 276 MRYN 279 (381)
Q Consensus 276 i~~~ 279 (381)
-||-
T Consensus 113 SRya 116 (178)
T COG5199 113 SRYA 116 (178)
T ss_pred HHHH
Confidence 4543
No 35
>cd08535 SAM_PNT-Tel_Yan Sterile alpha motif (SAM)/Pointed domain of Tel/Yan protein. SAM Pointed domain of Tel (Translocation, Ets, Leukemia)/Yan subfamily of ETS transcriptional repressors is a protein-protein interaction domain. SAM Pointed domains of this type of regulators can interact with each other, forming head-to-tail homodimers or homooligomers, and/or interact with SAM Pointed domains of another subfamily of ETS factors forming heterodimers. The oligomeric form is able to block transcription of target genesand is involved in MAPK signaling. They participate in regulation of different processes during embryo development including hematopoietic differentiation and eye development. Tel/Yan transcriptional factors are frequent targets of chromosomal translocations resulting in fusions of SAM domain with new neighboring genes. Such chimeric proteins were found in different tumors. Members of this subfamily are potential targets for cancer therapy.
Probab=48.85 E-value=20 Score=27.13 Aligned_cols=37 Identities=22% Similarity=0.300 Sum_probs=27.1
Q ss_pred CHHHHHHHHHhhhccCC-CccccCCCCCCCccchhHHHHHHH
Q 035967 297 TDADILQWANAKVRISG-SQSHMNSFKDKSLADGIFFLELLS 337 (381)
Q Consensus 297 ~~~~lL~W~~~~~~~~~-~~~~i~nF~d~sw~dG~~~~aLi~ 337 (381)
|++++..|++-.+.+|+ ..+.+.+|. -+|+++|+|=+
T Consensus 7 t~~~V~~WL~wa~~ef~L~~i~~~~F~----mnGk~LC~ls~ 44 (68)
T cd08535 7 SRDDVLQWLRWAENEFSLPPIDSNTFE----MNGKALCLLTK 44 (68)
T ss_pred CHHHHHHHHHHHHHhcCCCCCChhccC----CCHHHHhcCCH
Confidence 56788999998888885 234456664 68999998754
No 36
>cd08531 SAM_PNT-ERG_FLI-1 Sterile alpha motif (SAM)/Pointed domain of ERG (Ets related gene) and FLI-1 (Friend leukemia integration 1) transcription factors. SAM Pointed domain of ERG/FLI-1 subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The ERG and FLI regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. They are proto-oncogenes implicated in cancer development such as myeloid leukemia, Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=46.05 E-value=22 Score=27.37 Aligned_cols=38 Identities=21% Similarity=0.355 Sum_probs=27.6
Q ss_pred CHHHHHHHHHhhhccCC-CccccCCCCCCCccchhHHHHHHH
Q 035967 297 TDADILQWANAKVRISG-SQSHMNSFKDKSLADGIFFLELLS 337 (381)
Q Consensus 297 ~~~~lL~W~~~~~~~~~-~~~~i~nF~d~sw~dG~~~~aLi~ 337 (381)
|++++..|++-.+.+|+ ..+.+.+|. =-+|+++|+|=.
T Consensus 9 t~~~V~~WL~Wa~~ef~L~~i~~~~F~---~m~Gk~LC~lt~ 47 (75)
T cd08531 9 TREHVRQWLEWAVKEYGLQDVDVSRFQ---NIDGKELCKMTK 47 (75)
T ss_pred CHHHHHHHHHHHHHHcCCCCCChhhcc---CCChHHHHcCCH
Confidence 56789999999998885 233445662 278999998754
No 37
>cd08540 SAM_PNT-ERG Sterile alpha motif (SAM)/Pointed domain of ERG transcription factor. SAM Pointed domain of ERG subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It may participate in formation of homodimers or heterodimers with ETS-2, Fli-1, ER81, and Pu-1. However, dimeric forms are inactive and SAM Pointed domain is not essential for dimerization, since ER81 and Pu-1 do not have it. In mouse, a regulator of this type binds the ESET histone H3-specific methyltransferase (human homolog is SETDB1), followed by modification of local chromatin structure through histone methylation. ERG regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. The Erg gene is a proto-oncogene. It is a target of chromosomal translocations resulting in fusions with new neighboring genes. Chimeric proteins were found in solid tumors such as myeloid leukemia or Ewing's sarcoma. Members of this subfamily are po
Probab=44.17 E-value=26 Score=27.07 Aligned_cols=37 Identities=16% Similarity=0.191 Sum_probs=27.2
Q ss_pred CHHHHHHHHHhhhccCCCccccCCCCCCCc--cchhHHHHHHH
Q 035967 297 TDADILQWANAKVRISGSQSHMNSFKDKSL--ADGIFFLELLS 337 (381)
Q Consensus 297 ~~~~lL~W~~~~~~~~~~~~~i~nF~d~sw--~dG~~~~aLi~ 337 (381)
|+.++..|++-.+.+|+ +.-.+++ .| -+|+++|+|=.
T Consensus 9 t~~~V~~WL~Wa~~ef~--L~~~~~~--~F~~m~Gk~LC~Lsk 47 (75)
T cd08540 9 STDHVRQWLEWAVKEYG--LPDVDVL--LFQNIDGKELCKMTK 47 (75)
T ss_pred CHHHHHHHHHHHHHHhC--CCCCCcc--cccCCCHHHHHhCCH
Confidence 56789999999999985 3334443 46 39999998754
No 38
>cd08536 SAM_PNT-Mae Sterile alpha motif (SAM)/Pointed domain of Mae protein homolog. Mae (Modulator of the Activity of ETS) subfamily represents a group of SAM Pointed monodomain proteins. SAM Pointed domain is a protein-protein interaction domain. It can interact with other SAM pointed domains forming head-to-tail heterodimers and also provides a kinase docking site. For example, in Drosophila Mae is required for facilitating phosphorylation of the Yan factor and for blocking phosphorylation of the ETS-2 regulator. Mae interacts with the SAM Pointed domains of Yan and ETS-2. Binding enhances access of the kinase to the Yan phosphorylation site by providing a kinase docking site, or inhibits phosphorylation of ETS-2 by blocking its docking site. This type of factors participates in regulation of kinase signaling particularly during embryogenesis.
Probab=43.64 E-value=28 Score=26.14 Aligned_cols=37 Identities=8% Similarity=0.082 Sum_probs=27.2
Q ss_pred CHHHHHHHHHhhhccCC-CccccCCCCCCCccchhHHHHHHH
Q 035967 297 TDADILQWANAKVRISG-SQSHMNSFKDKSLADGIFFLELLS 337 (381)
Q Consensus 297 ~~~~lL~W~~~~~~~~~-~~~~i~nF~d~sw~dG~~~~aLi~ 337 (381)
|+.+...|++..+.+|+ ..+.+.+|. -+|+++|+|=+
T Consensus 6 s~~~V~~WL~w~~~ef~L~~~~~~~F~----m~Gk~LC~ls~ 43 (66)
T cd08536 6 SREHVRTWLRWVSARYQLEVVDLDKFL----MNGKGLCLMSL 43 (66)
T ss_pred CHHHHHHHHHHHHHHhCCCCCCccccC----CCHHHHHcCCH
Confidence 46789999999998886 223455664 49999998744
No 39
>cd08542 SAM_PNT-ETS-1 Sterile alpha motif (SAM)/Pointed domain of ETS-1. SAM Pointed domain of ETS-1 subfamily of ETS transcriptional activators is a protein-protein interaction domain. The ETS-1 activator is regulated by phosphorylation. It contains a docking site for the ERK2 MAP (Mitogen Activated Protein) kinase, while the ERK2 phosphorylation site is located in the N-terminal disordered region upstream of the SAM Pointed domain. Mutations of the kinase docking site residues inhibit phosphorylation. ETS-1 activators play role in a number of different physiological processes, and they are expressed during embryonic development, including blood vessel formation, hematopoietic, lymphoid, neuronal and osteogenic differentiation. The Ets-1 gene is a proto-oncogene involved in progression of different tumors (including breast cancer, meningioma, and prostate cancer). Members of this subfamily are potential molecular targets for selective cancer therapy.
Probab=40.27 E-value=33 Score=27.34 Aligned_cols=37 Identities=16% Similarity=0.227 Sum_probs=27.3
Q ss_pred CHHHHHHHHHhhhccCC-CccccCCCCCCCccchhHHHHHHH
Q 035967 297 TDADILQWANAKVRISG-SQSHMNSFKDKSLADGIFFLELLS 337 (381)
Q Consensus 297 ~~~~lL~W~~~~~~~~~-~~~~i~nF~d~sw~dG~~~~aLi~ 337 (381)
|+.+...|++-.+.+|+ .++.+.+|. -+|+++|+|=+
T Consensus 23 t~~~V~~WL~Wa~~ef~L~~i~~~~F~----m~Gk~LC~Ls~ 60 (88)
T cd08542 23 TETHVRDWVMWAVNEFSLKGVDFQKFC----MNGAALCALGK 60 (88)
T ss_pred CHHHHHHHHHHHHHHcCCCCCCcccCC----CCHHHHHcCCH
Confidence 56789999998888885 234455553 68999998754
No 40
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=39.55 E-value=15 Score=40.33 Aligned_cols=42 Identities=21% Similarity=0.543 Sum_probs=29.2
Q ss_pred HHHHHHHHhhhccCCCccccCCCCCCCccchhHHHHHHHhhCCCCccc
Q 035967 299 ADILQWANAKVRISGSQSHMNSFKDKSLADGIFFLELLSAVQPRAVNW 346 (381)
Q Consensus 299 ~~lL~W~~~~~~~~~~~~~i~nF~d~sw~dG~~~~aLi~~~~P~~id~ 346 (381)
..|+.|++. ..- ..++.++. +..||.+|..++|.|.|..++-
T Consensus 10 ~~Lv~Wv~t-f~~---~~~~~~~~--dL~DGv~L~evL~qIDp~~F~~ 51 (713)
T PF05622_consen 10 DSLVTWVQT-FNL---SAPCSSYE--DLSDGVALAEVLHQIDPEYFND 51 (713)
T ss_dssp HHHHHHHTT-------SS---SHH--HHTTSHHHHHHHHHH-TTTS-H
T ss_pred HHHHHHHHH-CCC---CCCcCCHH--HccchHHHHHHHHHhCccccCc
Confidence 359999997 322 23688897 6999999999999999998873
No 41
>cd08541 SAM_PNT-FLI-1 Sterile alpha motif (SAM)/Pointed domain of friend leukemia integration 1 transcription activator. SAM Pointed domain of FLI-1 (Friend Leukemia Integration) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The FLI-1 protein participates in regulation of cellular differentiation, proliferation, and survival. The Fli-1 gene was initially described in Friend virus-induced erythroleukemias as a site for virus integration. It is highly expressed in hematopoietic tissues and at lower level in lungs, heart, and ovaries. Fli-1 is a proto-oncogene implicated in Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=37.86 E-value=36 Score=27.32 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=26.6
Q ss_pred CHHHHHHHHHhhhccCCCccccCCCCCCCc--cchhHHHHHHH
Q 035967 297 TDADILQWANAKVRISGSQSHMNSFKDKSL--ADGIFFLELLS 337 (381)
Q Consensus 297 ~~~~lL~W~~~~~~~~~~~~~i~nF~d~sw--~dG~~~~aLi~ 337 (381)
|+.++..|++-.+.+|+ +.=-++. .| -+|+++|+|=+
T Consensus 21 t~~hV~~WL~Wa~~ef~--L~~vd~~--~F~~m~Gk~LC~Lsk 59 (91)
T cd08541 21 TQEHVRQWLEWAIKEYG--LMEIDTS--FFQNMDGKELCKMNK 59 (91)
T ss_pred CHHHHHHHHHHHHHHcC--CCCCChh--hccCCCHHHHHhCCH
Confidence 56789999999999985 3222332 46 39999998754
No 42
>cd08203 SAM_PNT Sterile alpha motif (SAM)/Pointed domain. Sterile alpha motif (SAM)/Pointed domain is found in about 40% of transcriptional regulators of ETS family (initially named for Erythroblastosis virus, E26-E Twenty Six). SAM Pointed domain containing proteins of this family additionally have C-terminal ETS DNA-binding domain. In a few cases, SAM Pointed domain appears as a single domain protein. Members of this group are mostly involved in regulation of embryonic development and growth control in eukaryotes. SAM Pointed domains mediate protein-protein interactions. Depending on the subgroup, they can interact with other SAM Pointed domains forming homo or hetero dimers/oligomers and/or they can recruit a protein kinase to its target which can be the SAM Pointed domain containing protein itself or another protein that has no kinase docking site. Thus, SAM Pointed domains participate in transcriptional regulation and signal transduction. Some genes coding ETS family transcripti
Probab=37.48 E-value=39 Score=25.17 Aligned_cols=37 Identities=22% Similarity=0.325 Sum_probs=26.7
Q ss_pred CHHHHHHHHHhhhccCC-CccccCCCCCCCccchhHHHHHHH
Q 035967 297 TDADILQWANAKVRISG-SQSHMNSFKDKSLADGIFFLELLS 337 (381)
Q Consensus 297 ~~~~lL~W~~~~~~~~~-~~~~i~nF~d~sw~dG~~~~aLi~ 337 (381)
|+.+...|++....+++ ..+.+.+|. -+|+.+|.|=.
T Consensus 6 t~~~V~~Wl~w~~~~f~L~~~~~~~F~----m~G~~Lc~ls~ 43 (66)
T cd08203 6 TKEHVLQWLEWAVKEFSLPPIDFSKFN----MNGKELCLLTK 43 (66)
T ss_pred CHHHHHHHHHHHHHhcCCCCCChhhcC----CCHHHHHhCCH
Confidence 46789999999998885 123556664 68999997643
No 43
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=37.06 E-value=40 Score=39.29 Aligned_cols=79 Identities=19% Similarity=0.299 Sum_probs=58.8
Q ss_pred HHHHHHHHhhhcCCccccccccccccchHHHHHHHHHhCCCCCC--C--CcCCCCCHHHHHHHHHHhHHhhCCcccccc-
Q 035967 107 LLRWMNFHLKKAGYKKIVTNFSSDIKDGEAYANLLNVLAPEHSN--P--STLAVKNPLQRAKLILEHADRMGCRRYLTA- 181 (381)
Q Consensus 107 LL~Wvn~~l~~~g~~~~I~nF~~d~~DG~~l~aLl~~~~p~~~~--~--~~~~~~d~~~na~~a~~~Ae~Lgi~~~L~p- 181 (381)
.-+|+..+++.. . .+-+.|..++|+|+.++.|-+.+.|+.-. + ..+. =.-..|.-.-+.+.+.+|+|...-|
T Consensus 47 ~k~W~e~cl~ed-L-~pttele~~LRNGV~LAkL~~~f~PD~~~~~~~~~~~~-frHtdNi~q~~~~me~iglP~iF~~E 123 (1401)
T KOG2128|consen 47 AKRWIEECLGED-L-PPTTELEEGLRNGVYLAKLGQFFAPDLEQTIYKANDLH-FRHTDNINQWLRAMESIGLPEIFYPE 123 (1401)
T ss_pred HHHHHHHHhccc-C-CCchHHHHHhhhhhHHHHHHhhcCCcceeeeeecCCce-eecchhHHHHHHHHhhcCCCcccccc
Confidence 458999999754 2 26788999999999999999999996531 1 1111 2345688889999999999986555
Q ss_pred -cccccCC
Q 035967 182 -KDIVEGS 188 (381)
Q Consensus 182 -eDI~~~~ 188 (381)
.||-++.
T Consensus 124 ~~Dvy~~k 131 (1401)
T KOG2128|consen 124 TTDVYEGK 131 (1401)
T ss_pred hhhhhcCC
Confidence 4787764
No 44
>cd08543 SAM_PNT-ETS-2 Sterile alpha motif (SAM)/Pointed domain of ETS-2. SAM Pointed domain of ETS-2 subfamily of ETS transcriptional regulators is a protein-protein interaction domain. It contains a docking site for Cdk10 (cyclin-dependent kinase 10), a member of the Cdc2 kinase family. The interaction between ETS-2 and Cdk10 kinase inhibits ETS-2 transactivation activity in mammals. ETS-2 is also regulated by ERK2 MAP kinase. ETS-2, which is phosphorylated by ERK2, can interact with coactivators and enhance transactivation. ETS-2 transcriptional activators are involved in embryonic development and cell cycle control. The Ets-2 gene is a proto-oncogene. It is overexpressed in breast and prostate cancer cells and its overexpression is necessary for transformation of such cells. Members of ETS-2 subfamily are potential molecular targets for selective cancer therapy.
Probab=36.12 E-value=42 Score=26.81 Aligned_cols=37 Identities=16% Similarity=0.210 Sum_probs=27.6
Q ss_pred CHHHHHHHHHhhhccCC-CccccCCCCCCCccchhHHHHHHH
Q 035967 297 TDADILQWANAKVRISG-SQSHMNSFKDKSLADGIFFLELLS 337 (381)
Q Consensus 297 ~~~~lL~W~~~~~~~~~-~~~~i~nF~d~sw~dG~~~~aLi~ 337 (381)
|+.+...|++-.+..|+ .++.+.+|. -+|+++|+|=+
T Consensus 23 t~~~V~~WL~Wa~~ef~L~~i~~~~F~----m~Gk~LC~Ls~ 60 (89)
T cd08543 23 TEQQVCQWLLWATNEFSLVNVNFQQFG----MNGQELCNLGK 60 (89)
T ss_pred CHHHHHHHHHHHHHHcCCCCCCcccCC----CChHHHHcCCH
Confidence 56789999988888885 234556663 78999998754
No 45
>cd08534 SAM_PNT-GABP-alpha Sterile alpha motif (SAM)/Pointed domain of GA-binding protein alpha chain. SAM Pointed domain of GABP-alpha subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. This type of transcriptional regulators forms heterotetramers containing two alpha and two beta subunits. It interacts with GA repeats (purine rich repeats). GABP transcriptional factors control gene expression in cell cycle control, apoptosis, and cellular respiration. GABP participates in regulation of transmembrane receptors and key hormones especially in myeloid cells and at the neuromuscular junction.
Probab=33.24 E-value=44 Score=26.68 Aligned_cols=37 Identities=16% Similarity=0.325 Sum_probs=27.7
Q ss_pred CHHHHHHHHHhhhccCC-CccccCCCCCCCccchhHHHHHHH
Q 035967 297 TDADILQWANAKVRISG-SQSHMNSFKDKSLADGIFFLELLS 337 (381)
Q Consensus 297 ~~~~lL~W~~~~~~~~~-~~~~i~nF~d~sw~dG~~~~aLi~ 337 (381)
|+.+...|++-.+.+|+ ..+.+.+|. -+|+++|+|=.
T Consensus 23 t~~~V~~WL~Wa~~ef~L~~v~~~~F~----m~Gk~LC~Ls~ 60 (89)
T cd08534 23 TEDQVLHWVVWAVKEFSLTDIDLSDWN----ITGRELCSLTQ 60 (89)
T ss_pred CHHHHHHHHHHHHHHcCCCCCChhhcC----CCHHHHhcCCH
Confidence 56789999999998885 234456664 49999998754
No 46
>cd08757 SAM_PNT_ESE Sterile alpha motif (SAM)/Pointed domain of ESE-like ETS transcriptional regulators. SAM Pointed domain of ESE-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ETS factors are important for cell differentiation. They can be involved in regulation of gene expression in different types of epithelial cells. They are expressed in salivary gland, intestine, stomach, pancreas, lungs, kidneys, colon, mammary gland, and prostate. Members of this group are proto-oncogenes. Expression profiles of these factors are altered in epithelial cancers, which makes them potential targets for cancer therapy.
Probab=32.60 E-value=51 Score=24.76 Aligned_cols=37 Identities=19% Similarity=0.333 Sum_probs=26.2
Q ss_pred CHHHHHHHHHhhhccCCC---ccccCCCCCCCccchhHHHHHHH
Q 035967 297 TDADILQWANAKVRISGS---QSHMNSFKDKSLADGIFFLELLS 337 (381)
Q Consensus 297 ~~~~lL~W~~~~~~~~~~---~~~i~nF~d~sw~dG~~~~aLi~ 337 (381)
|+.+.+.|+...+..|+- ++.+.+|. -||+++|.|=+
T Consensus 6 t~~~V~~Wl~w~~~e~~l~~~~i~~~~F~----m~Gk~LC~ms~ 45 (68)
T cd08757 6 TKNDVLEWLQFVAEQNKLDAECISFQKFN----IDGQTLCSMTE 45 (68)
T ss_pred CHHHHHHHHHHHHHHcCCCCCcCCccccC----CCHHHHHcCCH
Confidence 467899999988877641 13456664 68999998754
No 47
>smart00251 SAM_PNT SAM / Pointed domain. A subfamily of the SAM domain
Probab=30.85 E-value=60 Score=25.36 Aligned_cols=37 Identities=19% Similarity=0.340 Sum_probs=26.1
Q ss_pred CHHHHHHHHHhhhccCC-CccccCCCCCCCccchhHHHHHHH
Q 035967 297 TDADILQWANAKVRISG-SQSHMNSFKDKSLADGIFFLELLS 337 (381)
Q Consensus 297 ~~~~lL~W~~~~~~~~~-~~~~i~nF~d~sw~dG~~~~aLi~ 337 (381)
|..+...|++..+..|. ..+.+.+|. -+|+++|.|=.
T Consensus 21 t~~~V~~Wl~w~~~ef~L~~~~~~~f~----m~G~~Lc~ls~ 58 (82)
T smart00251 21 TEDHVLEWLEWAVKEFSLSPIDFSKFD----MSGKELCSMSK 58 (82)
T ss_pred CHHHHHHHHHHHHHhcCCCCCCcccCC----CCHHHHHcCCH
Confidence 67889999999998874 123334443 58999997643
No 48
>COG5261 IQG1 Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms]
Probab=26.23 E-value=56 Score=36.34 Aligned_cols=39 Identities=18% Similarity=0.340 Sum_probs=31.0
Q ss_pred HHHHHHHhhhcCCccccccccccccchHHHHHHHHHhCCCCC
Q 035967 108 LRWMNFHLKKAGYKKIVTNFSSDIKDGEAYANLLNVLAPEHS 149 (381)
Q Consensus 108 L~Wvn~~l~~~g~~~~I~nF~~d~~DG~~l~aLl~~~~p~~~ 149 (381)
-.|+...++.+ .+-.-|.+++++|+.++.|...+.|+..
T Consensus 50 K~WIee~~~~~---l~~~~fe~slRnGV~La~l~q~f~pd~~ 88 (1054)
T COG5261 50 KIWIEEVIEEA---LPELCFEDSLRNGVFLAKLTQRFNPDLT 88 (1054)
T ss_pred HHHHHHHhccC---CchhhHHHHHhccchHHHHHHHhCCCce
Confidence 36888887643 2345588999999999999999999975
No 49
>cd08538 SAM_PNT-ESE-2-like Sterile alpha motif (SAM)/Pointed domain of ESE-2 like ETS transcriptional regulators. SAM Pointed domain of ESE-2-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ESE-2 factors are involved in regulation of gene expression in a variety of epithelial (glandular and secretory) cells. ESE-2 mRNA was found in skin keratinocytes, salivary gland, mammary gland, stomach, prostate, and kidneys. The DNA binding consensus motif for ESE-2 consists of a GGA core and AT-rich flanks. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=25.60 E-value=67 Score=25.01 Aligned_cols=37 Identities=11% Similarity=0.183 Sum_probs=26.8
Q ss_pred CHHHHHHHHHhhhccCCC---ccccCCCCCCCccchhHHHHHHH
Q 035967 297 TDADILQWANAKVRISGS---QSHMNSFKDKSLADGIFFLELLS 337 (381)
Q Consensus 297 ~~~~lL~W~~~~~~~~~~---~~~i~nF~d~sw~dG~~~~aLi~ 337 (381)
|+.+.+.|+.-.+.+|+= ++.+.+|. -||+.+|++-+
T Consensus 11 s~~~V~~WL~Wav~ef~L~~~~i~~~~f~----m~Gk~LC~ms~ 50 (78)
T cd08538 11 TKRHVWEWLQFCCDQYKLDANCISFCHFN----ISGLQLCSMTQ 50 (78)
T ss_pred CHHHHHHHHHHHHHHcCCCccccchhhcC----CCHHHHHcCCH
Confidence 667899999999999851 12334443 68999998754
No 50
>cd08532 SAM_PNT-PDEF-like Sterile alpha motif (SAM)/Pointed domain of prostate-derived ETS factor. SAM Pointed domain of PDEF-like (Prostate-Derived ETS Factor) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. In human males this activator is highly expressed in the prostate gland and enhances androgen-mediated activation of the PSA promoter though interaction with the DNA binding domain of androgen receptor. PDEF may play a role in prostate cancer development as well as in goblet cell formation and mucus production in the epithelial lining of respiratory and intestinal tracts.
Probab=23.31 E-value=85 Score=24.24 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=26.9
Q ss_pred CHHHHHHHHHhhhccCCCccccCCCCCCCccchhHHHHHHH
Q 035967 297 TDADILQWANAKVRISGSQSHMNSFKDKSLADGIFFLELLS 337 (381)
Q Consensus 297 ~~~~lL~W~~~~~~~~~~~~~i~nF~d~sw~dG~~~~aLi~ 337 (381)
|++++..|++..+.+|+=.-.+.+|. -||+.+|+|=+
T Consensus 14 s~~~V~~WL~w~~~ef~L~~~~~~F~----mnG~~LC~ls~ 50 (76)
T cd08532 14 SPANVQKWLLWTEHQYRLPPPPRCFE----LNGKDLCALSE 50 (76)
T ss_pred CHHHHHHHHHHHHHHhCCCCchhcCC----CCHHHHHcCCH
Confidence 67889999999999985111344553 68999997744
Done!