BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035968
(112 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AJ0|A Chain A, Solution Structure Of Apocada
pdb|2AJ1|A Chain A, Solution Structure Of Apocada
Length = 71
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 1 MAKKTIVSVK-LLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGDA 48
MA+KT+ V L C C K + + ++EG+T +++ + +TV G+A
Sbjct: 1 MAEKTVYRVDGLSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTGEA 49
>pdb|2ROP|A Chain A, Solution Structure Of Domains 3 And 4 Of Human Atp7b
Length = 202
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 11 LLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGDADPVKIIKKVREFRKSAAIESIG 70
+ C C + +I++LEG+ I + ++ T TV+ +P I + E R AAIE +G
Sbjct: 131 MTCASCVHSIEGMISQLEGVQQISVSLAEGTATVL--YNPAVISPE--ELR--AAIEDMG 184
>pdb|1P8G|A Chain A, The Solution Structure Of Apo Copz From Bacillus
Subtilis
pdb|1K0V|A Chain A, Copper Trafficking: The Solution Structure Of Bacillus
Subtilis Copz
Length = 73
Score = 28.9 bits (63), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 28/53 (52%)
Query: 1 MAKKTIVSVKLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGDADPVKI 53
M +KT+ + C C + V + +L+G++++ ++ V V DAD V +
Sbjct: 1 MEQKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSV 53
>pdb|2QIF|A Chain A, Crystal Structure Of A Metallochaperone With A
Tetranuclear Cu(I) Cluster
pdb|2QIF|B Chain B, Crystal Structure Of A Metallochaperone With A
Tetranuclear Cu(I) Cluster
pdb|3I9Z|A Chain A, Crystal Structure Of A Metallochaperone With A
Trinuclear Cu(I) Cluster
Length = 69
Score = 28.9 bits (63), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 28/53 (52%)
Query: 1 MAKKTIVSVKLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGDADPVKI 53
M +KT+ + C C + V + +L+G++++ ++ V V DAD V +
Sbjct: 1 MEQKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSV 53
>pdb|3P2N|A Chain A, Discovery And Structural Characterization Of A New
Glycoside Hydrolase Family Abundant In Coastal Waters
That Was Annotated As 'hypothetical Protein'
pdb|3P2N|B Chain B, Discovery And Structural Characterization Of A New
Glycoside Hydrolase Family Abundant In Coastal Waters
That Was Annotated As 'hypothetical Protein'
Length = 408
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 94 RCDVWYVVGEDYYSY 108
RCD+WY ED +++
Sbjct: 136 RCDIWYATSEDGWTW 150
>pdb|3V4S|A Chain A, Crystal Structure Of Adp-atp Complex Of Purk:
N5-carboxyaminoimidazole Ribonucleotide Synthetase
pdb|3V4S|B Chain B, Crystal Structure Of Adp-atp Complex Of Purk:
N5-carboxyaminoimidazole Ribonucleotide Synthetase
Length = 387
Score = 25.4 bits (54), Expect = 7.5, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 19 KVMKLIAKLEGITSIVIDPSKNT-------VTVIGDADPVKIIKKVREFRKSAAIE 67
++M L AK G V+DP+KN+ + ++ D +K I+ + E E
Sbjct: 27 RMMALAAKEMGYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISDVVTYE 82
>pdb|3Q2O|A Chain A, Crystal Structure Of Purk: N5-Carboxyaminoimidazole
Ribonucleotide Synthetase
pdb|3Q2O|B Chain B, Crystal Structure Of Purk: N5-Carboxyaminoimidazole
Ribonucleotide Synthetase
pdb|3QFF|A Chain A, Crystal Structure Of Adp Complex Of Purk:
N5-Carboxyaminoimidazole Ribonucleotide Synthetase
pdb|3QFF|B Chain B, Crystal Structure Of Adp Complex Of Purk:
N5-Carboxyaminoimidazole Ribonucleotide Synthetase
pdb|3R5H|A Chain A, Crystal Structure Of Adp-Air Complex Of Purk:
N5-Carboxyaminoimidazole Ribonucleotide Synthetase
pdb|3R5H|B Chain B, Crystal Structure Of Adp-Air Complex Of Purk:
N5-Carboxyaminoimidazole Ribonucleotide Synthetase
Length = 389
Score = 25.4 bits (54), Expect = 7.9, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 19 KVMKLIAKLEGITSIVIDPSKNT-------VTVIGDADPVKIIKKVREFRKSAAIE 67
++M L AK G V+DP+KN+ + ++ D +K I+ + E E
Sbjct: 27 RMMALAAKEMGYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISDVVTYE 82
>pdb|4DLK|A Chain A, Crystal Structure Of Atp-ca++ Complex Of Purk: N5-
Carboxyaminoimidazole Ribonucleotide Synthetase
pdb|4DLK|B Chain B, Crystal Structure Of Atp-ca++ Complex Of Purk: N5-
Carboxyaminoimidazole Ribonucleotide Synthetase
Length = 380
Score = 25.4 bits (54), Expect = 8.5, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 19 KVMKLIAKLEGITSIVIDPSKNT-------VTVIGDADPVKIIKKVREFRKSAAIE 67
++M L AK G V+DP+KN+ + ++ D +K I+ + E E
Sbjct: 21 RMMALAAKEMGYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISDVVTYE 76
>pdb|2VOY|A Chain A, Cryoem Model Of Copa, The Copper Transporting Atpase
From Archaeoglobus Fulgidus
pdb|1JWW|A Chain A, Nmr Characterization Of The N-Terminal Domain Of A
Potential Copper-Translocating P-Type Atpase From
Bacillus Subtilis
Length = 80
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 11 LLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTV 44
+ C C ++ K + K+EG+ + ++ + TVTV
Sbjct: 12 MTCAACANRIEKRLNKIEGVANAPVNFALETVTV 45
>pdb|1P6T|A Chain A, Structure Characterization Of The Water Soluble Region Of
P- Type Atpase Copa From Bacillus Subtilis
Length = 151
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 11 LLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTV 44
+ C C ++ K + K+EG+ + ++ + TVTV
Sbjct: 83 MTCAACANRIEKRLNKIEGVANAPVNFALETVTV 116
>pdb|2RML|A Chain A, Solution Structure Of The N-Terminal Soluble Domains Of
Bacillus Subtilis Copa
Length = 147
Score = 25.0 bits (53), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 11 LLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTV 44
+ C C ++ K + K+EG+ + ++ + TVTV
Sbjct: 83 MTCAACANRIEKRLNKIEGVANAPVNFALETVTV 116
>pdb|1KQK|A Chain A, Solution Structure Of The N-Terminal Domain Of A
Potential Copper-Translocating P-Type Atpase From
Bacillus Subtilis In The Cu(I)loaded State
Length = 80
Score = 25.0 bits (53), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 11 LLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTV 44
+ C C ++ K + K+EG+ + ++ + TVTV
Sbjct: 12 MTCAACANRIEKRLNKIEGVANAPVNFALETVTV 45
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,844,941
Number of Sequences: 62578
Number of extensions: 84722
Number of successful extensions: 200
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 191
Number of HSP's gapped (non-prelim): 14
length of query: 112
length of database: 14,973,337
effective HSP length: 76
effective length of query: 36
effective length of database: 10,217,409
effective search space: 367826724
effective search space used: 367826724
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)