BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035968
(112 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SZN7|HIP26_ARATH Heavy metal-associated isoprenylated plant protein 26
OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1
Length = 153
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 34/51 (66%)
Query: 7 VSVKLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGDADPVKIIKKV 57
+ VK+ C C +KV + + ++G++S+ ++P + VTV+G DP K++ ++
Sbjct: 30 IKVKMDCEGCERKVRRSVEGMKGVSSVTLEPKAHKVTVVGYVDPNKVVARM 80
>sp|Q6BK66|CCS1_DEBHA Superoxide dismutase 1 copper chaperone OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=CCS1 PE=3 SV=2
Length = 250
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%)
Query: 6 IVSVKLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGDADPVKIIKKVREFRKSAA 65
+ +V + C C V + L GI+ ID N VT G P +I+K ++ K A
Sbjct: 8 VFAVPMECQSCVDSVSSSLKSLNGISKYDIDLKSNLVTTEGSVPPSEIVKAIQSTGKDAI 67
Query: 66 IESIGPPK 73
I G P
Sbjct: 68 IRGTGAPN 75
>sp|Q6BZU2|CCS1_YARLI Superoxide dismutase 1 copper chaperone OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=CCS1 PE=3 SV=1
Length = 234
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%)
Query: 1 MAKKTIVSVKLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGDADPVKIIKKVREF 60
M+ T +V L C C V + +A ++GI S+ ++V G + P +I+K V+
Sbjct: 1 MSFTTTFAVPLECESCCDSVKQALANVQGIESVDCKLVDQLISVTGTSAPSQIVKAVQNI 60
Query: 61 RKSAAIESIGPPK 73
K A + G P
Sbjct: 61 GKDAIVRGTGQPN 73
>sp|Q4L971|COPZ_STAHJ Copper chaperone CopZ OS=Staphylococcus haemolyticus (strain
JCSC1435) GN=copZ PE=3 SV=2
Length = 68
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%)
Query: 1 MAKKTIVSVKLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGDADPVKI 53
M K I + C CR V +AKL G+TS +D KN V V D + V +
Sbjct: 1 MINKVINVEGMSCDHCRNAVESALAKLNGVTSAEVDLDKNQVRVDYDENRVSV 53
>sp|Q60048|CADA_LISMN Probable cadmium-transporting ATPase OS=Listeria monocytogenes
GN=cadA PE=1 SV=1
Length = 711
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 10/77 (12%)
Query: 1 MAKKTIVSVK-LLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGDADPVKIIKKVRE 59
MA+KT+ V L C C K + + ++EG+T +++ + +TV G+A +++
Sbjct: 1 MAEKTVYRVDGLSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTGEA-------SIQQ 53
Query: 60 FRKSAAIE--SIGPPKE 74
++ A E I P KE
Sbjct: 54 VEQAGAFEHLKIIPEKE 70
>sp|Q59385|COPA_ECOLI Copper-exporting P-type ATPase A OS=Escherichia coli (strain K12)
GN=copA PE=1 SV=4
Length = 834
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 13 CLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGDADPVKIIKKVREFRKSA-AIESIGP 71
C C +V + + G+T ++ ++ T V+G A P +++ V + A AIE
Sbjct: 110 CASCVTRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQAVEKAGYGAEAIEDDAK 169
Query: 72 PKEEKKE 78
+E ++E
Sbjct: 170 RRERQQE 176
>sp|Q8XD24|COPA_ECO57 Copper-exporting P-type ATPase A OS=Escherichia coli O157:H7
GN=copA PE=3 SV=3
Length = 834
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 13 CLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGDADPVKIIKKVREFRKSA-AIESIGP 71
C C +V + + G+T ++ ++ T V+G A P +++ V + A AIE
Sbjct: 110 CASCVTRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQAVEKAGYGAEAIEDDAK 169
Query: 72 PKEEKKE 78
+E ++E
Sbjct: 170 RRERQQE 176
>sp|Q4QH39|BOP1_LEIMA Ribosome biogenesis protein BOP1 homolog OS=Leishmania major
GN=LmjF11.0410 PE=3 SV=1
Length = 808
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 53 IIKKVREFRKSAAIESIGPPKEEKKEEKQ 81
I K VR RK A + P KEEK+EE Q
Sbjct: 269 IAKMVRRLRKEEAERRLRPAKEEKEEEDQ 297
>sp|A4HUV2|BOP1_LEIIN Ribosome biogenesis protein BOP1 homolog OS=Leishmania infantum
GN=LinJ11.0410 PE=3 SV=1
Length = 808
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 53 IIKKVREFRKSAAIESIGPPKEEKKEEKQ 81
I K VR RK A + P KEEK+EE Q
Sbjct: 269 IAKMVRRLRKEEAERKLRPGKEEKEEEDQ 297
>sp|C6A168|RNP1_THESM Ribonuclease P protein component 1 OS=Thermococcus sibiricus
(strain MM 739 / DSM 12597) GN=rnp1 PE=3 SV=1
Length = 122
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 1 MAKKTIVSVKLLCLKCRQKVMKLIA-KLEGITSIVIDPSKNTVTVIG 46
M KKT++ +L+ LK KV+K L GI VID +KNT+T++G
Sbjct: 38 MTKKTLLMHELIGLKV--KVVKSSHPGLIGIEGYVIDETKNTLTILG 82
>sp|Q8CN01|COPZ_STAES Copper chaperone CopZ OS=Staphylococcus epidermidis (strain ATCC
12228) GN=copZ PE=3 SV=1
Length = 68
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 1 MAKKTIVSVKLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTV 44
M +K I + C CR V +AKL G++S ++ +N V V
Sbjct: 1 MTQKIIKVEGMSCEHCRNAVESALAKLNGVSSAEVNLDENHVRV 44
>sp|Q5HL55|COPZ_STAEQ Copper chaperone CopZ OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=copZ PE=3 SV=1
Length = 68
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 1 MAKKTIVSVKLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTV 44
M +K I + C CR V +AKL G++S ++ +N V V
Sbjct: 1 MTQKIIKVEGMSCEHCRNAVESALAKLNGVSSAEVNLDENHVRV 44
>sp|Q8GZ42|ATX5_ARATH Histone-lysine N-methyltransferase ATX5 OS=Arabidopsis thaliana
GN=ATX5 PE=2 SV=1
Length = 1043
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 38/85 (44%)
Query: 14 LKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGDADPVKIIKKVREFRKSAAIESIGPPK 73
L C +K + I K+ S P+ +TV +I V K + + +K + I +
Sbjct: 755 LHCLEKNGRQITKMVSYCSYHRAPNPDTVLIIQTPSGVFSAKSLVQNKKKSGTRLILANR 814
Query: 74 EEKKEEKQGVLVPVAPKACQRCDVW 98
EE +E +P+ P + RC ++
Sbjct: 815 EEIEESAAEDTIPIDPFSSARCRLY 839
>sp|A6U7I6|RSMA_SINMW Ribosomal RNA small subunit methyltransferase A OS=Sinorhizobium
medicae (strain WSM419) GN=rsmA PE=3 SV=1
Length = 274
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 2 AKKTIVSVKLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVT-VIGDADPVKIIKKVREF 60
AKK + LL L QK+ + LEG+T I + P +T I K++ R+
Sbjct: 21 AKKALGQNFLLDLNLTQKIARTAGPLEGVTVIEVGPGPGGLTRAILALGAKKVVAIERDS 80
Query: 61 RKSAAIESIGPPKEEKKEEKQG 82
R A+ IG E+ + +G
Sbjct: 81 RCLPALAEIGAHYPERLDVVEG 102
>sp|O21047|NU4M_DICDI NADH-ubiquinone oxidoreductase chain 4 OS=Dictyostelium discoideum
GN=nad4 PE=3 SV=1
Length = 540
Score = 28.9 bits (63), Expect = 9.0, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 44 VIGDADPVKIIKKVREFRKSAAIESIGPPKEEKKEE 79
++ D + + +I+ V + ++ I+ IG PKE KKE+
Sbjct: 460 IVADMNALFLIEDVMKKKEERGIDDIGQPKEVKKEQ 495
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,138,772
Number of Sequences: 539616
Number of extensions: 1527168
Number of successful extensions: 4937
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 4917
Number of HSP's gapped (non-prelim): 46
length of query: 112
length of database: 191,569,459
effective HSP length: 80
effective length of query: 32
effective length of database: 148,400,179
effective search space: 4748805728
effective search space used: 4748805728
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)