Query 035968
Match_columns 112
No_of_seqs 154 out of 1323
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 13:31:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035968.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035968hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iwl_A Copper transport protei 99.7 6.4E-17 2.2E-21 96.2 9.3 67 1-69 1-67 (68)
2 1cc8_A Protein (metallochapero 99.7 1.5E-15 5.1E-20 90.9 10.0 68 1-68 3-71 (73)
3 3dxs_X Copper-transporting ATP 99.6 2.2E-15 7.5E-20 90.1 9.2 68 2-69 1-72 (74)
4 3fry_A Probable copper-exporti 99.6 2.4E-15 8.2E-20 90.3 8.1 67 1-69 3-70 (73)
5 4a4j_A Pacszia, cation-transpo 99.6 9.5E-15 3.2E-19 86.1 9.5 65 3-67 2-69 (69)
6 2xmw_A PACS-N, cation-transpor 99.6 5.1E-14 1.7E-18 82.1 9.8 67 1-67 1-70 (71)
7 2crl_A Copper chaperone for su 99.5 8.9E-14 3E-18 88.5 9.8 70 3-72 19-88 (98)
8 2xmm_A SSR2857 protein, ATX1; 99.5 2.4E-13 8.1E-18 77.7 7.7 60 5-64 3-63 (64)
9 2l3m_A Copper-ION-binding prot 99.4 9.8E-13 3.4E-17 76.8 9.2 63 2-64 4-70 (71)
10 2roe_A Heavy metal binding pro 99.4 2.6E-13 8.9E-18 78.9 6.6 62 6-67 3-65 (66)
11 1osd_A MERP, hypothetical prot 99.4 1.3E-12 4.5E-17 76.3 9.4 65 3-67 3-71 (72)
12 1mwy_A ZNTA; open-faced beta-s 99.4 2E-12 6.8E-17 76.3 9.9 65 1-66 2-68 (73)
13 2k2p_A Uncharacterized protein 99.4 5.9E-13 2E-17 82.6 7.3 62 3-64 22-84 (85)
14 3cjk_B Copper-transporting ATP 99.4 3.2E-12 1.1E-16 75.5 10.3 66 3-68 2-71 (75)
15 1aw0_A Menkes copper-transport 99.4 1.5E-12 5.3E-17 75.9 8.8 64 3-66 3-70 (72)
16 2qif_A Copper chaperone COPZ; 99.4 2.5E-12 8.6E-17 73.6 9.3 63 1-64 1-67 (69)
17 1y3j_A Copper-transporting ATP 99.4 7.3E-13 2.5E-17 79.0 7.2 68 2-69 2-73 (77)
18 1cpz_A Protein (COPZ); copper 99.4 3.5E-12 1.2E-16 73.5 8.5 61 6-66 3-67 (68)
19 1kvi_A Copper-transporting ATP 99.4 2.9E-12 1E-16 76.5 8.3 66 3-68 8-77 (79)
20 1yg0_A COP associated protein; 99.4 3.3E-12 1.1E-16 73.2 8.1 60 5-64 3-65 (66)
21 1fvq_A Copper-transporting ATP 99.4 4.8E-12 1.6E-16 73.8 8.8 64 5-68 4-70 (72)
22 2kt2_A Mercuric reductase; nme 99.4 3.8E-12 1.3E-16 73.9 8.1 61 7-67 4-67 (69)
23 2g9o_A Copper-transporting ATP 99.4 3.4E-12 1.2E-16 79.3 8.2 67 4-70 4-77 (90)
24 1yjr_A Copper-transporting ATP 99.4 3.5E-12 1.2E-16 75.0 7.8 66 3-68 4-73 (75)
25 1q8l_A Copper-transporting ATP 99.4 4.2E-12 1.4E-16 77.4 8.1 65 4-68 10-78 (84)
26 1opz_A Potential copper-transp 99.4 5.7E-12 2E-16 73.9 8.4 65 3-67 6-74 (76)
27 1jww_A Potential copper-transp 99.3 5.8E-12 2E-16 75.0 8.4 67 2-68 2-72 (80)
28 2aj0_A Probable cadmium-transp 99.3 2.7E-12 9.3E-17 75.5 6.6 62 1-66 1-63 (71)
29 2kyz_A Heavy metal binding pro 99.3 3.8E-12 1.3E-16 74.1 6.7 60 5-66 3-63 (67)
30 2ldi_A Zinc-transporting ATPas 99.3 5.5E-12 1.9E-16 72.8 6.9 62 4-65 4-69 (71)
31 2kkh_A Putative heavy metal tr 99.3 2.4E-11 8.2E-16 75.8 9.6 70 3-72 16-89 (95)
32 2ew9_A Copper-transporting ATP 99.3 1.5E-11 5E-16 81.4 8.7 63 4-66 81-147 (149)
33 2ofg_X Zinc-transporting ATPas 99.3 1.7E-11 5.9E-16 79.1 8.6 64 3-66 8-75 (111)
34 1p6t_A Potential copper-transp 99.3 1.7E-11 5.8E-16 81.6 8.3 67 4-70 75-145 (151)
35 1qup_A Superoxide dismutase 1 99.3 3.7E-11 1.3E-15 87.0 9.8 69 4-72 7-75 (222)
36 2ew9_A Copper-transporting ATP 99.2 5.3E-11 1.8E-15 78.7 8.9 68 1-68 2-73 (149)
37 2rop_A Copper-transporting ATP 99.2 1.4E-10 4.8E-15 81.4 9.5 66 4-69 123-192 (202)
38 1jk9_B CCS, copper chaperone f 99.2 9.2E-11 3.1E-15 86.3 8.8 69 4-72 8-76 (249)
39 1p6t_A Potential copper-transp 98.9 7.5E-09 2.6E-13 68.6 8.3 63 2-64 5-71 (151)
40 2rop_A Copper-transporting ATP 98.9 6.2E-09 2.1E-13 72.9 7.3 63 3-65 20-89 (202)
41 3j09_A COPA, copper-exporting 98.8 2.4E-08 8.1E-13 82.5 9.1 63 5-67 4-70 (723)
42 4gwb_A Peptide methionine sulf 93.9 0.17 6E-06 34.8 6.3 55 1-60 1-73 (168)
43 3bpd_A Uncharacterized protein 93.5 0.19 6.4E-06 31.8 5.2 50 19-68 23-80 (100)
44 2x3d_A SSO6206; unknown functi 93.4 0.23 8E-06 31.1 5.6 50 19-68 22-79 (96)
45 2raq_A Conserved protein MTH88 93.2 0.21 7.2E-06 31.4 5.2 50 19-68 23-80 (97)
46 1jdq_A TM006 protein, hypothet 90.0 2.2 7.4E-05 26.5 7.4 55 5-68 27-84 (98)
47 3lvj_C Sulfurtransferase TUSA; 89.8 2 6.9E-05 25.5 7.7 54 5-67 11-67 (82)
48 2jsx_A Protein NAPD; TAT, proo 88.9 2 6.8E-05 26.6 6.6 47 15-61 17-64 (95)
49 1je3_A EC005, hypothetical 8.6 87.9 1.3 4.3E-05 27.6 5.2 55 4-67 27-84 (97)
50 1fvg_A Peptide methionine sulf 85.9 2.1 7.1E-05 30.2 5.9 47 14-60 50-118 (199)
51 3bqh_A PILB, peptide methionin 85.3 2.2 7.6E-05 29.9 5.8 47 14-60 9-77 (193)
52 3e0m_A Peptide methionine sulf 84.1 2.2 7.4E-05 32.1 5.6 54 2-60 2-75 (313)
53 1ff3_A Peptide methionine sulf 82.5 3.6 0.00012 29.2 6.0 47 14-60 49-117 (211)
54 2j89_A Methionine sulfoxide re 81.1 3.7 0.00013 30.1 5.8 47 14-60 101-169 (261)
55 3lno_A Putative uncharacterize 80.8 1.9 6.4E-05 27.0 3.7 34 5-38 46-86 (108)
56 1nwa_A Peptide methionine sulf 80.2 4.2 0.00014 28.7 5.6 47 14-60 32-96 (203)
57 3cq1_A Putative uncharacterize 78.7 2.2 7.6E-05 26.3 3.5 33 5-37 43-81 (103)
58 3hz7_A Uncharacterized protein 78.6 5.9 0.0002 23.8 5.3 52 7-67 4-59 (87)
59 1pav_A Hypothetical protein TA 75.9 1.4 4.8E-05 25.8 1.8 51 6-65 8-61 (78)
60 2khp_A Glutaredoxin; thioredox 72.2 7.8 0.00027 22.3 4.6 35 1-37 4-38 (92)
61 1uwd_A Hypothetical protein TM 68.3 5.3 0.00018 24.5 3.3 33 5-37 44-82 (103)
62 3pim_A Peptide methionine sulf 63.8 6.7 0.00023 27.3 3.4 47 14-60 26-102 (187)
63 2klx_A Glutaredoxin; thioredox 58.4 11 0.00039 21.5 3.4 29 1-31 4-32 (89)
64 1owx_A Lupus LA protein, SS-B, 58.2 33 0.0011 21.8 6.7 57 4-60 18-76 (121)
65 2k1h_A Uncharacterized protein 56.4 23 0.00077 21.8 4.6 38 20-59 41-80 (94)
66 3pro_C Alpha-lytic protease; P 55.5 39 0.0013 22.8 6.1 36 28-63 114-150 (166)
67 2w7v_A General secretion pathw 55.0 34 0.0012 21.0 5.3 48 19-67 16-69 (95)
68 1t1v_A SH3BGRL3, SH3 domain-bi 54.0 20 0.00068 20.9 4.0 34 4-38 3-41 (93)
69 1nho_A Probable thioredoxin; b 52.8 16 0.00055 20.0 3.4 38 1-38 1-42 (85)
70 3ic4_A Glutaredoxin (GRX-1); s 46.0 20 0.0007 20.4 3.1 28 2-31 11-38 (92)
71 2lqo_A Putative glutaredoxin R 42.9 38 0.0013 20.1 4.1 36 1-38 1-37 (92)
72 3v4k_A DNA DC->DU-editing enzy 42.0 24 0.00082 24.8 3.4 56 10-69 108-163 (203)
73 2nyt_A Probable C->U-editing e 42.0 28 0.00097 24.0 3.7 57 7-68 88-146 (190)
74 1tac_A TAT protein; transcript 39.4 14 0.00049 22.4 1.6 16 85-100 24-39 (86)
75 2fi0_A Conserved domain protei 38.7 23 0.00079 20.7 2.5 18 48-65 61-78 (81)
76 4e6k_G BFD, bacterioferritin-a 38.7 12 0.00042 21.8 1.2 20 8-27 33-52 (73)
77 1pqx_A Conserved hypothetical 37.7 22 0.00075 21.7 2.3 39 20-60 41-81 (91)
78 3gzb_A Putative snoal-like pol 35.0 42 0.0015 22.2 3.5 32 26-57 119-151 (154)
79 3mi9_C Protein TAT; P-TEFB, HI 34.8 4.2 0.00015 24.8 -1.3 16 85-100 24-39 (86)
80 3gv1_A Disulfide interchange p 33.1 90 0.0031 20.0 5.0 26 5-31 18-43 (147)
81 2yy3_A Elongation factor 1-bet 32.0 33 0.0011 20.9 2.5 21 16-36 66-86 (91)
82 2cuy_A Malonyl COA-[acyl carri 31.8 1.3E+02 0.0044 21.6 6.1 52 17-69 137-189 (305)
83 1gh8_A Translation elongation 31.4 32 0.0011 20.8 2.3 23 14-36 61-83 (89)
84 3rdw_A Putative arsenate reduc 31.0 96 0.0033 19.2 5.3 52 5-64 7-59 (121)
85 2cpq_A FragIle X mental retard 30.0 94 0.0032 18.8 6.8 42 20-62 36-77 (91)
86 1kaf_A Transcription regulator 29.1 1.1E+02 0.0038 19.3 4.6 39 27-66 43-81 (108)
87 3ady_A DOTD; 3-layer(BAB) sand 28.6 76 0.0026 21.1 4.0 36 38-73 64-100 (148)
88 2e9h_A EIF-5, eukaryotic trans 27.7 92 0.0032 20.8 4.3 31 29-60 69-99 (157)
89 2qip_A Protein of unknown func 27.5 40 0.0014 22.0 2.5 30 40-69 111-141 (165)
90 2v50_A Multidrug resistance pr 26.7 1.1E+02 0.0037 26.1 5.5 44 17-60 159-210 (1052)
91 1fo5_A Thioredoxin; disulfide 25.3 86 0.0029 16.7 4.3 34 5-38 6-43 (85)
92 2kgs_A Uncharacterized protein 24.5 38 0.0013 21.6 1.9 17 32-48 78-94 (132)
93 3tzy_A Polyketide synthase PKS 24.1 1.7E+02 0.0059 22.7 5.9 53 17-70 281-334 (491)
94 1ytb_A Protein (tata binding p 24.0 86 0.0029 21.3 3.7 24 37-60 147-170 (180)
95 4dx5_A Acriflavine resistance 23.1 1.4E+02 0.0049 25.2 5.6 43 17-59 159-209 (1057)
96 1f60_B Elongation factor EEF1B 22.5 70 0.0024 19.5 2.7 23 14-36 66-89 (94)
97 2y9j_Y Lipoprotein PRGK, prote 21.8 66 0.0022 21.6 2.7 19 18-36 91-109 (170)
98 2in3_A Hypothetical protein; D 21.8 53 0.0018 21.7 2.3 21 4-25 9-29 (216)
99 3gkx_A Putative ARSC family re 21.7 1.5E+02 0.0051 18.2 5.4 48 9-64 10-57 (120)
100 2k6g_A Replication factor C su 21.5 1.5E+02 0.0051 18.2 4.2 28 37-64 33-63 (109)
101 3vow_A Probable DNA DC->DU-edi 21.5 54 0.0019 22.7 2.3 54 11-69 95-150 (190)
102 3h63_A Serine/threonine-protei 21.4 2.1E+02 0.0071 21.0 5.6 45 18-63 39-85 (315)
103 1yj7_A ESCJ; mixed alpha/beta, 21.3 68 0.0023 21.5 2.7 21 17-37 92-112 (171)
104 3fpn_B Geobacillus stearotherm 20.8 77 0.0026 19.4 2.7 27 37-63 10-38 (106)
105 1b64_A Elongation factor 1-bet 20.7 72 0.0025 19.3 2.5 24 14-37 63-87 (91)
106 3c1r_A Glutaredoxin-1; oxidize 20.5 1.5E+02 0.0051 17.8 4.3 24 5-28 27-50 (118)
107 1mp9_A Tata-binding protein; t 20.4 1.1E+02 0.0038 21.1 3.7 26 37-62 155-187 (198)
108 3f0i_A Arsenate reductase; str 20.4 1.4E+02 0.0047 18.4 3.9 47 9-63 10-56 (119)
No 1
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=99.71 E-value=6.4e-17 Score=96.16 Aligned_cols=67 Identities=21% Similarity=0.375 Sum_probs=61.0
Q ss_pred CceeEEEeecccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEeeCCHHHHHHHHHhcCCceEEecC
Q 035968 1 MAKKTIVSVKLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGDADPVKIIKKVREFRKSAAIESI 69 (112)
Q Consensus 1 m~~~~~~~vgm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~k~G~~~~~~~~ 69 (112)
|+ +..|.+||+|.+|+++|+++|++++|| ++.+|+.+++++|.++++++.|.++|+++||.+.++++
T Consensus 1 m~-~~~~~vgm~C~~C~~~i~~~l~~~~gV-~v~v~~~~~~~~v~~~~~~~~i~~~i~~~Gy~~~~~~~ 67 (68)
T 3iwl_A 1 MP-KHEFSVDMTCGGCAEAVSRVLNKLGGV-KYDIDLPNKKVCIESEHSMDTLLATLKKTGKTVSYLGL 67 (68)
T ss_dssp -C-EEEEEECCCSHHHHHHHHHHHHHHCSE-EEEEETTTTEEEEEESSCHHHHHHHHHTTCSCEEEEEC
T ss_pred Cc-eEEEEECcCcHHHHHHHHHHHHcCCCe-EEEEEcCCCEEEEEecCCHHHHHHHHHHcCCceEecCC
Confidence 44 455666999999999999999999999 99999999999999999999999999999999998864
No 2
>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A
Probab=99.65 E-value=1.5e-15 Score=90.87 Aligned_cols=68 Identities=25% Similarity=0.296 Sum_probs=63.1
Q ss_pred CceeEEEeecccChhHHHHHHHHHHccC-CccEEEEecCCCEEEEEeeCCHHHHHHHHHhcCCceEEec
Q 035968 1 MAKKTIVSVKLLCLKCRQKVMKLIAKLE-GITSIVIDPSKNTVTVIGDADPVKIIKKVREFRKSAAIES 68 (112)
Q Consensus 1 m~~~~~~~vgm~C~~C~~kI~k~L~~~~-GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~k~G~~~~~~~ 68 (112)
||++..|.++|+|.+|+++|+++|++++ ||.++.+|+.+++++|.+..+++.|.++|+++||.+.++.
T Consensus 3 ~m~~~~~~v~m~C~~C~~~ie~~l~~~~~GV~~~~v~~~~~~~~v~~~~~~~~i~~~i~~~Gy~~~~~~ 71 (73)
T 1cc8_A 3 EIKHYQFNVVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIKKTGKEVRSGK 71 (73)
T ss_dssp CCEEEEEEECCCSHHHHHHHHHHHHTTTTSEEEEEEETTTTEEEEEESSCHHHHHHHHHTTSSCEEEEE
T ss_pred CceEEEEEEeeECHHHHHHHHHHHHhCCCCceEEEEECCCCEEEEEEeCCHHHHHHHHHHhCCCceeee
Confidence 4677888888999999999999999999 9999999999999999988899999999999999988764
No 3
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=99.63 E-value=2.2e-15 Score=90.08 Aligned_cols=68 Identities=19% Similarity=0.285 Sum_probs=61.5
Q ss_pred ceeEEEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee---CCHHHHHHHHHhcCCceEEecC
Q 035968 2 AKKTIVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD---ADPVKIIKKVREFRKSAAIESI 69 (112)
Q Consensus 2 ~~~~~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~k~G~~~~~~~~ 69 (112)
|++..|.+ ||+|.+|+++|+++|++++||.++.+|+.+++++|.++ ++++.|.++|+++||.+++++.
T Consensus 1 M~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~ 72 (74)
T 3dxs_X 1 MRKIQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIEDAGFEAEILAE 72 (74)
T ss_dssp CEEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHTCEEEEEEE
T ss_pred CcEEEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHCCCceEEccC
Confidence 45667777 99999999999999999999999999999999999864 5899999999999999988753
No 4
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=99.61 E-value=2.4e-15 Score=90.28 Aligned_cols=67 Identities=24% Similarity=0.306 Sum_probs=61.9
Q ss_pred CceeEEEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEeeCCHHHHHHHHHhcCCceEEecC
Q 035968 1 MAKKTIVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGDADPVKIIKKVREFRKSAAIESI 69 (112)
Q Consensus 1 m~~~~~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~k~G~~~~~~~~ 69 (112)
||++..|.+ ||+|.+|+.+|+++|++ +||..+.+|+.+++++|.++ +++.|.++|+++||.+.+.+.
T Consensus 3 ~m~~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~~~~v~~~-~~~~i~~~i~~~Gy~~~~~~~ 70 (73)
T 3fry_A 3 SVEKIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEAVVAGNKE-DVDKYIKAVEAAGYQAKLRSS 70 (73)
T ss_dssp CCEEEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEEEEEEEGG-GHHHHHHHHHHTTCEEEECCS
T ss_pred ccEEEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCCEEEEEEC-CHHHHHHHHHHcCCceEecCc
Confidence 566777887 99999999999999999 99999999999999999998 999999999999999988753
No 5
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=99.60 E-value=9.5e-15 Score=86.06 Aligned_cols=65 Identities=17% Similarity=0.275 Sum_probs=59.6
Q ss_pred eeEEEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEe--eCCHHHHHHHHHhcCCceEEe
Q 035968 3 KKTIVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIG--DADPVKIIKKVREFRKSAAIE 67 (112)
Q Consensus 3 ~~~~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~--~~~~~~i~~~i~k~G~~~~~~ 67 (112)
+++.|.+ ||+|.+|+++|+++|++++||.++.+|+.+++++|.+ .++++.|.++|++.||.++++
T Consensus 2 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~Gy~~~~~ 69 (69)
T 4a4j_A 2 QTINLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGYHARVL 69 (69)
T ss_dssp EEEEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTCCHHHHHHHHHHTTCEEEEC
T ss_pred CEEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHHcCCceEeC
Confidence 5667887 9999999999999999999999999999999999995 479999999999999998763
No 6
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=99.56 E-value=5.1e-14 Score=82.08 Aligned_cols=67 Identities=19% Similarity=0.296 Sum_probs=59.7
Q ss_pred CceeEEEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee--CCHHHHHHHHHhcCCceEEe
Q 035968 1 MAKKTIVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD--ADPVKIIKKVREFRKSAAIE 67 (112)
Q Consensus 1 m~~~~~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~--~~~~~i~~~i~k~G~~~~~~ 67 (112)
|+++..|.+ ||+|.+|+.+|+++|.+++||.++.+|+.+++++|.++ ++.+.|.+.|.+.||.+.++
T Consensus 1 m~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~~~~~~ 70 (71)
T 2xmw_A 1 MAQTINLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGYHARVL 70 (71)
T ss_dssp -CEEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEC---CHHHHHHHHHHHTCEEEEE
T ss_pred CCcEEEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCHHHHHHHHHHcCCCceeC
Confidence 788888888 99999999999999999999999999999999999865 57889999999999987653
No 7
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=8.9e-14 Score=88.53 Aligned_cols=70 Identities=14% Similarity=0.265 Sum_probs=63.8
Q ss_pred eeEEEeecccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEeeCCHHHHHHHHHhcCCceEEecCCCC
Q 035968 3 KKTIVSVKLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGDADPVKIIKKVREFRKSAAIESIGPP 72 (112)
Q Consensus 3 ~~~~~~vgm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~k~G~~~~~~~~~~~ 72 (112)
.++.|.+.|+|.+|+++|+++|.+++||.++.+|+.+++++|.+.++++.|.++|+++||.+.++..+..
T Consensus 19 ~~~~l~V~m~C~~C~~~Ie~aL~~l~GV~~v~vdl~~~~~~V~~~~~~~~i~~~i~~~Gy~~~~~~~~~~ 88 (98)
T 2crl_A 19 CTLEFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGTGRQAVLKGMGSG 88 (98)
T ss_dssp EEEEEEECCCSHHHHHHHHHTTTTCTTCCEEEEETTTTEEEEEESSCHHHHHHHHHTTTSCEEEEESCCC
T ss_pred eEEEEEEeeECHHHHHHHHHHHHcCCCceEEEEECCCCEEEEEEeCCHHHHHHHHHHhCCceEEccCCCC
Confidence 4567777899999999999999999999999999999999999988999999999999999998766543
No 8
>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A
Probab=99.47 E-value=2.4e-13 Score=77.65 Aligned_cols=60 Identities=13% Similarity=0.276 Sum_probs=55.7
Q ss_pred EEEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEeeCCHHHHHHHHHhcCCce
Q 035968 5 TIVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGDADPVKIIKKVREFRKSA 64 (112)
Q Consensus 5 ~~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~k~G~~~ 64 (112)
..|.+ ||+|.+|+.+|+++|.+++||.++.+|+.+++++|.+..+.+.|.++|+++||.+
T Consensus 3 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~i~~~i~~~G~~~ 63 (64)
T 2xmm_A 3 IQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGYEV 63 (64)
T ss_dssp EEEECTTCCSHHHHHHHHHHHHHHCTTCEEEECTTTCEEEEECSSCHHHHHHHHHHTTCCC
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCcEEEEEEecCCEEEEEecCCHHHHHHHHHHcCCCC
Confidence 35677 9999999999999999999999999999999999998788999999999999975
No 9
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=99.44 E-value=9.8e-13 Score=76.76 Aligned_cols=63 Identities=16% Similarity=0.306 Sum_probs=56.5
Q ss_pred ceeEEEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee---CCHHHHHHHHHhcCCce
Q 035968 2 AKKTIVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD---ADPVKIIKKVREFRKSA 64 (112)
Q Consensus 2 ~~~~~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~k~G~~~ 64 (112)
|.+..|.+ ||+|.+|+.+|+++|.+++||..+.+|+.+++++|.++ ++.+.|.+.|.+.||.+
T Consensus 4 ~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~ 70 (71)
T 2l3m_A 4 MEQLTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAEGTVEVTIDSSVVTLKDIVAVIEDQGYDV 70 (71)
T ss_dssp EEEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTSCHHHHHHHHHHTTCEE
T ss_pred cEEEEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCC
Confidence 44566777 99999999999999999999999999999999999864 57889999999999965
No 10
>2roe_A Heavy metal binding protein; NMR {Thermus thermophilus} PDB: 2rog_A
Probab=99.44 E-value=2.6e-13 Score=78.87 Aligned_cols=62 Identities=26% Similarity=0.417 Sum_probs=56.2
Q ss_pred EEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEeeCCHHHHHHHHHhcCCceEEe
Q 035968 6 IVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGDADPVKIIKKVREFRKSAAIE 67 (112)
Q Consensus 6 ~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~k~G~~~~~~ 67 (112)
.|.+ ||+|.+|+.+|+++|.+++||.++.+|+.+++++|.+..+++.|.++|+++||.+..+
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~i~~~i~~~Gy~~~~~ 65 (66)
T 2roe_A 3 KLKVEGMTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGTADPKALVQAVEEEGYKAEVL 65 (66)
T ss_dssp CEEEECCCSHHHHHHHHHHHHTSTTCCCEEECSSSCBEEECSCCCHHHHHHHHHTTTCEEEEC
T ss_pred EEEECCeEcHHHHHHHHHHHHcCCCeEEEEEEeCCCEEEECCCCCHHHHHHHHHHcCCCcEec
Confidence 3555 9999999999999999999999999999999999965688999999999999987654
No 11
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=99.44 E-value=1.3e-12 Score=76.27 Aligned_cols=65 Identities=22% Similarity=0.349 Sum_probs=58.1
Q ss_pred eeEEEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee---CCHHHHHHHHHhcCCceEEe
Q 035968 3 KKTIVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD---ADPVKIIKKVREFRKSAAIE 67 (112)
Q Consensus 3 ~~~~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~k~G~~~~~~ 67 (112)
++..|.+ ||+|.+|+.+|+++|.+++||.++.+|+.+++++|.++ .+.+.|.+.|.+.||.+.+.
T Consensus 3 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~ 71 (72)
T 1osd_A 3 QTVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADAGYPSSVK 71 (72)
T ss_dssp EEEEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTCCHHHHHHHHHHTTCCCEEC
T ss_pred eEEEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcCCCeEec
Confidence 4566777 99999999999999999999999999999999999865 57889999999999987653
No 12
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=99.43 E-value=2e-12 Score=76.33 Aligned_cols=65 Identities=15% Similarity=0.195 Sum_probs=56.7
Q ss_pred CceeEEEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEeeC-CHHHHHHHHHhcCCceEE
Q 035968 1 MAKKTIVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGDA-DPVKIIKKVREFRKSAAI 66 (112)
Q Consensus 1 m~~~~~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~~-~~~~i~~~i~k~G~~~~~ 66 (112)
|+ +..|.+ ||+|.+|+.+|+++|.+++||.++.+|+.+++++|.++. ..+.|.+.|.++||.+..
T Consensus 2 m~-~~~~~v~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~i~~~i~~~Gy~~~~ 68 (73)
T 1mwy_A 2 GT-RYSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQKAGYSLRD 68 (73)
T ss_dssp CE-EEEEEEESCCSTTHHHHHHHHHHTSSSEEEEEEETTTTEEEEEESSCCHHHHHHHHHHHTCEEEE
T ss_pred Ce-EEEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCHHHHHHHHHHcCCcccc
Confidence 44 456676 999999999999999999999999999999999998763 367899999999998764
No 13
>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str}
Probab=99.42 E-value=5.9e-13 Score=82.57 Aligned_cols=62 Identities=21% Similarity=0.252 Sum_probs=57.3
Q ss_pred eeEEEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEeeCCHHHHHHHHHhcCCce
Q 035968 3 KKTIVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGDADPVKIIKKVREFRKSA 64 (112)
Q Consensus 3 ~~~~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~k~G~~~ 64 (112)
.+..|.+ ||+|.+|+++|+++|.+++||.++.+|+.+++++|.++++++.|.++|+++||.+
T Consensus 22 ~~~~l~V~Gm~C~~C~~~Ie~aL~~~~GV~~v~v~l~~~~~~V~~~~~~~~i~~~i~~~Gy~~ 84 (85)
T 2k2p_A 22 AGLSFHVEDMTCGHCAGVIKGAIEKTVPGAAVHADPASRTVVVGGVSDAAHIAEIITAAGYTP 84 (85)
T ss_dssp CEEEEECTTCCHHHHHHHHHHHHHHHSTTCEEEEETTTTEEEEESCCCHHHHHHHHHHTTCCC
T ss_pred cEEEEEECCCCCHHHHHHHHHHHhcCCCeeEEEEECCCCEEEEEecCCHHHHHHHHHHcCCCC
Confidence 3456777 9999999999999999999999999999999999998889999999999999965
No 14
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=99.42 E-value=3.2e-12 Score=75.53 Aligned_cols=66 Identities=21% Similarity=0.409 Sum_probs=58.7
Q ss_pred eeEEEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee---CCHHHHHHHHHhcCCceEEec
Q 035968 3 KKTIVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD---ADPVKIIKKVREFRKSAAIES 68 (112)
Q Consensus 3 ~~~~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~k~G~~~~~~~ 68 (112)
.++.|.+ ||+|.+|+.+|+++|.+++||.++.+|+.+++++|.++ .+.+.|.+.|.+.||.+.+..
T Consensus 2 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~ 71 (75)
T 3cjk_B 2 NSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDAVIHN 71 (75)
T ss_dssp EEEEEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCceEeec
Confidence 3456777 99999999999999999999999999999999999865 578899999999999887653
No 15
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=99.42 E-value=1.5e-12 Score=75.95 Aligned_cols=64 Identities=22% Similarity=0.413 Sum_probs=57.6
Q ss_pred eeEEEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee---CCHHHHHHHHHhcCCceEE
Q 035968 3 KKTIVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD---ADPVKIIKKVREFRKSAAI 66 (112)
Q Consensus 3 ~~~~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~k~G~~~~~ 66 (112)
++..|.+ ||+|.+|+.+|+++|.+++||.++.+|+.+++++|.++ .+.+.|.+.|.+.||.+.+
T Consensus 3 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~ 70 (72)
T 1aw0_A 3 QETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDMGFDATL 70 (72)
T ss_dssp EEEEEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCEEEE
T ss_pred eEEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCcCCHHHHHHHHHHCCCCcEe
Confidence 4556777 99999999999999999999999999999999999875 5788999999999998765
No 16
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A
Probab=99.41 E-value=2.5e-12 Score=73.59 Aligned_cols=63 Identities=17% Similarity=0.348 Sum_probs=55.6
Q ss_pred CceeEEEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee---CCHHHHHHHHHhcCCce
Q 035968 1 MAKKTIVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD---ADPVKIIKKVREFRKSA 64 (112)
Q Consensus 1 m~~~~~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~k~G~~~ 64 (112)
|+ +..|.+ ||+|.+|+.+|+++|..++||.++.+|+.+++++|.++ .+.+.|.+.|.+.||.+
T Consensus 1 m~-~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~ 67 (69)
T 2qif_A 1 ME-QKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIEDQGYDV 67 (69)
T ss_dssp CE-EEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHTTCEE
T ss_pred Ce-EEEEEECCcccHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCc
Confidence 44 445666 99999999999999999999999999999999999864 57889999999999965
No 17
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=99.41 E-value=7.3e-13 Score=78.98 Aligned_cols=68 Identities=22% Similarity=0.336 Sum_probs=59.9
Q ss_pred ceeEEEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee---CCHHHHHHHHHhcCCceEEecC
Q 035968 2 AKKTIVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD---ADPVKIIKKVREFRKSAAIESI 69 (112)
Q Consensus 2 ~~~~~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~k~G~~~~~~~~ 69 (112)
|++..|.+ ||+|.+|+.+|+++|.+++||.++.+|+.+++++|.++ ++.+.|.+.|.++||.+.++..
T Consensus 2 m~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~ 73 (77)
T 1y3j_A 2 SSKCYIQVTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIRELGFGATVIEN 73 (77)
T ss_dssp CEEEEEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTTTTBEEEEECTTTSCHHHHHHHHHHHTSCEEEESC
T ss_pred CEEEEEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCceEECCc
Confidence 44566777 99999999999999999999999999999999999864 5788999999999999877543
No 18
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=99.38 E-value=3.5e-12 Score=73.48 Aligned_cols=61 Identities=18% Similarity=0.386 Sum_probs=55.5
Q ss_pred EEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee---CCHHHHHHHHHhcCCceEE
Q 035968 6 IVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD---ADPVKIIKKVREFRKSAAI 66 (112)
Q Consensus 6 ~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~k~G~~~~~ 66 (112)
.|.+ ||+|.+|+.+|+++|.+++||.++.+|+.+++++|.++ .+.+.|.+.|.+.||.+.+
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~ 67 (68)
T 1cpz_A 3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELGYQAEV 67 (68)
T ss_dssp EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHTTSSCEEE
T ss_pred EEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCccc
Confidence 3566 99999999999999999999999999999999999875 5788999999999998765
No 19
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=99.38 E-value=2.9e-12 Score=76.54 Aligned_cols=66 Identities=21% Similarity=0.409 Sum_probs=58.7
Q ss_pred eeEEEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee---CCHHHHHHHHHhcCCceEEec
Q 035968 3 KKTIVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD---ADPVKIIKKVREFRKSAAIES 68 (112)
Q Consensus 3 ~~~~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~k~G~~~~~~~ 68 (112)
.+..|.+ ||+|.+|+.+|+++|.+++||.++.+|+.+++++|.++ .+.+.|.++|.+.||.+.+..
T Consensus 8 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~ 77 (79)
T 1kvi_A 8 NSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDAVIHN 77 (79)
T ss_dssp EEEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHCCCEEECC
T ss_pred EEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHHHCCCceEecC
Confidence 3556777 99999999999999999999999999999999999865 577899999999999887653
No 20
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=99.37 E-value=3.3e-12 Score=73.17 Aligned_cols=60 Identities=23% Similarity=0.372 Sum_probs=54.2
Q ss_pred EEEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee--CCHHHHHHHHHhcCCce
Q 035968 5 TIVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD--ADPVKIIKKVREFRKSA 64 (112)
Q Consensus 5 ~~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~--~~~~~i~~~i~k~G~~~ 64 (112)
..|.+ ||+|.+|+.+|+++|.+++||.++.+|+.+++++|.++ .+.+.|.+.|.+.||.+
T Consensus 3 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~~~ 65 (66)
T 1yg0_A 3 ATFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQDLIKEALLDAGQEV 65 (66)
T ss_dssp EEECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTCCHHHHHHHHHHHTCCC
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEECCCCCHHHHHHHHHHcCCCc
Confidence 35666 99999999999999999999999999999999999865 47889999999999964
No 21
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B
Probab=99.37 E-value=4.8e-12 Score=73.81 Aligned_cols=64 Identities=20% Similarity=0.297 Sum_probs=57.6
Q ss_pred EEEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee--CCHHHHHHHHHhcCCceEEec
Q 035968 5 TIVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD--ADPVKIIKKVREFRKSAAIES 68 (112)
Q Consensus 5 ~~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~--~~~~~i~~~i~k~G~~~~~~~ 68 (112)
..|.+ ||+|.+|+.+|+++|.+++||.++.+|+.+++++|.++ .+.+.|.+.|.+.||.+.++.
T Consensus 4 ~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~~~~~~~ 70 (72)
T 1fvq_A 4 VILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIEDCGFDCEILR 70 (72)
T ss_dssp EEEEECSCCSHHHHHHHHHHHHTSSSEEEECCBTTTTEEEEEECTTSCHHHHHHHHHHHTCCEEEEE
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHHCCCceEEcc
Confidence 45666 99999999999999999999999999999999999865 578899999999999987763
No 22
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=99.36 E-value=3.8e-12 Score=73.92 Aligned_cols=61 Identities=18% Similarity=0.334 Sum_probs=55.2
Q ss_pred Eee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee--CCHHHHHHHHHhcCCceEEe
Q 035968 7 VSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD--ADPVKIIKKVREFRKSAAIE 67 (112)
Q Consensus 7 ~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~--~~~~~i~~~i~k~G~~~~~~ 67 (112)
|.+ ||+|.+|+.+|+++|.+++||.++.+|+.+++++|..+ .+.+.|.+.|.++||.+.+.
T Consensus 4 ~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~Gy~~~~~ 67 (69)
T 2kt2_A 4 LKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVPGTSPDALTAAVAGLGYKATLA 67 (69)
T ss_dssp EEEESSCSTHHHHHHHHHHHHSTTEEEEEEETTTTEEEEEECTTSCHHHHHHHHHTTTSEEECC
T ss_pred EEECCcccHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCHHHHHHHHHHCCCceEeC
Confidence 555 99999999999999999999999999999999999865 57889999999999987653
No 23
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=99.36 E-value=3.4e-12 Score=79.34 Aligned_cols=67 Identities=16% Similarity=0.292 Sum_probs=58.4
Q ss_pred eEEEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee---CCHHHHHHHHHhc---CCceEEecCC
Q 035968 4 KTIVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD---ADPVKIIKKVREF---RKSAAIESIG 70 (112)
Q Consensus 4 ~~~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~k~---G~~~~~~~~~ 70 (112)
++.|.+ ||+|.+|+++|+++|.+++||.++.+|+.+++++|.++ ++++.|.++|.++ ||.+.++...
T Consensus 4 ~~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~~~~~~V~~~~~~~~~~~i~~~i~~~g~Ggy~~~~~~~~ 77 (90)
T 2g9o_A 4 TATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVVYNASSVTPESLRKAIEAVSPGLYRVSITSEV 77 (90)
T ss_dssp EEEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETTTTEEEEEECCSSCCTHHHHHHHHTTSTTTCEEECCCCC
T ss_pred EEEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHhccCCCeEEEEeCCC
Confidence 345666 99999999999999999999999999999999999864 5778999999999 5988776543
No 24
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=99.36 E-value=3.5e-12 Score=74.98 Aligned_cols=66 Identities=18% Similarity=0.288 Sum_probs=57.7
Q ss_pred eeEEEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee---CCHHHHHHHHHhcCCceEEec
Q 035968 3 KKTIVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD---ADPVKIIKKVREFRKSAAIES 68 (112)
Q Consensus 3 ~~~~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~k~G~~~~~~~ 68 (112)
++..|.+ ||+|.+|+.+|+++|.+++||.++.+|+.+++++|.++ .+++.|.+.|.++||.+.+..
T Consensus 4 ~~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~~ 73 (75)
T 1yjr_A 4 GVLELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIESLGFEPSLVK 73 (75)
T ss_dssp CCEEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETTTTEEEEEECTTTTHHHHHHHHHHHHHCEEEESS
T ss_pred eEEEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCceeec
Confidence 3456777 99999999999999999999999999999999999875 456789999999999876543
No 25
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=99.35 E-value=4.2e-12 Score=77.39 Aligned_cols=65 Identities=17% Similarity=0.318 Sum_probs=58.3
Q ss_pred eEEEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee---CCHHHHHHHHHhcCCceEEec
Q 035968 4 KTIVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD---ADPVKIIKKVREFRKSAAIES 68 (112)
Q Consensus 4 ~~~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~k~G~~~~~~~ 68 (112)
++.|.+ ||+|.+|+++|+++|.+++||.++.+|+.+++++|.++ ++.+.|.+.|.+.||.+.+..
T Consensus 10 ~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~ 78 (84)
T 1q8l_A 10 VLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAMGFPAFVKK 78 (84)
T ss_dssp EEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECSTTTEEEEEECTTTCCHHHHHHHHHHTTCCEECSC
T ss_pred EEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCceEecC
Confidence 456777 99999999999999999999999999999999999874 578899999999999887654
No 26
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A
Probab=99.35 E-value=5.7e-12 Score=73.92 Aligned_cols=65 Identities=25% Similarity=0.446 Sum_probs=57.6
Q ss_pred eeEEEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee---CCHHHHHHHHHhcCCceEEe
Q 035968 3 KKTIVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD---ADPVKIIKKVREFRKSAAIE 67 (112)
Q Consensus 3 ~~~~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~k~G~~~~~~ 67 (112)
.+..|.+ ||+|.+|+.+|+++|.+++||.++.+|+.++++.|..+ .+.+.|.+.|.++||.+.++
T Consensus 6 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~ 74 (76)
T 1opz_A 6 KEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGYHVVIE 74 (76)
T ss_dssp EEEEEEEESCCSTTHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHTCEEECC
T ss_pred eEEEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHCCCceecC
Confidence 4556777 99999999999999999999999999999999999864 57889999999999987653
No 27
>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A
Probab=99.35 E-value=5.8e-12 Score=74.99 Aligned_cols=67 Identities=19% Similarity=0.354 Sum_probs=58.6
Q ss_pred ceeEEEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee---CCHHHHHHHHHhcCCceEEec
Q 035968 2 AKKTIVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD---ADPVKIIKKVREFRKSAAIES 68 (112)
Q Consensus 2 ~~~~~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~k~G~~~~~~~ 68 (112)
|.+..|.+ ||+|.+|+.+|+++|.+++||.++.+|+.++++.|..+ .+.+.|...|.++||.+.+..
T Consensus 2 m~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~~ 72 (80)
T 1jww_A 2 TEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKLKG 72 (80)
T ss_dssp CEEEEEEEESCCCHHHHHHHHHHHHTSTTEEECCCCSSSSEEEEEECTTTCCHHHHHHHHHHHTSEEEECC
T ss_pred ceEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCeEEecC
Confidence 33456776 99999999999999999999999999999999999864 578899999999999887654
No 28
>2aj0_A Probable cadmium-transporting ATPase; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta, metal binding protein, hydrolase; NMR {Listeria monocytogenes} PDB: 2aj1_A
Probab=99.34 E-value=2.7e-12 Score=75.46 Aligned_cols=62 Identities=29% Similarity=0.530 Sum_probs=54.1
Q ss_pred CceeEEEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEeeCCHHHHHHHHHhcCCceEE
Q 035968 1 MAKKTIVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGDADPVKIIKKVREFRKSAAI 66 (112)
Q Consensus 1 m~~~~~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~k~G~~~~~ 66 (112)
|+++..|.+ ||+|.+|+.+|+++|.+++||.++.+|+.+++++|.++.+ ...|.++||.+.+
T Consensus 1 m~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~----~~~i~~~Gy~~~~ 63 (71)
T 2aj0_A 1 MAEKTVYRVDGLSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTGEAS----IQQVEQAGAFEHL 63 (71)
T ss_dssp CCCEEEEEEESCCCHHHHHHHHHHHHHSTTEEEEEECCSSEEEEEEESCC----HHHHHHHHTTTTC
T ss_pred CCeEEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEECCCCEEEEEecCc----HHHHHHhCCCccc
Confidence 777777887 9999999999999999999999999999999999988754 4577889987544
No 29
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=99.33 E-value=3.8e-12 Score=74.13 Aligned_cols=60 Identities=18% Similarity=0.382 Sum_probs=54.1
Q ss_pred EEEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEeeCCHHHHHHHHHhcCCceEE
Q 035968 5 TIVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGDADPVKIIKKVREFRKSAAI 66 (112)
Q Consensus 5 ~~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~k~G~~~~~ 66 (112)
..|.+ ||+|.+|+.+|+++|.++ ||.++.+|+.+++++|.++.+ +.|...|+++||.+..
T Consensus 3 ~~~~v~gm~C~~C~~~i~~~l~~~-gv~~~~v~~~~~~~~v~~~~~-~~i~~~i~~~Gy~~~~ 63 (67)
T 2kyz_A 3 YVLYVPDISCNHCKMRISKALEEL-GVKNYEVSVEEKKVVVETENL-DSVLKKLEEIDYPVES 63 (67)
T ss_dssp EEEECGGGGSHHHHHHHHHHHHHH-TCSEEEEETTTTEEEEECSCH-HHHHHHHHTTTCCCCB
T ss_pred EEEEECCcCcHHHHHHHHHHHHHc-CCeEEEEECCCCEEEEEECCH-HHHHHHHHHcCCceee
Confidence 45666 999999999999999999 999999999999999988755 8899999999997654
No 30
>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP}
Probab=99.32 E-value=5.5e-12 Score=72.79 Aligned_cols=62 Identities=16% Similarity=0.377 Sum_probs=55.1
Q ss_pred eEEEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee---CCHHHHHHHHHhcCCceE
Q 035968 4 KTIVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD---ADPVKIIKKVREFRKSAA 65 (112)
Q Consensus 4 ~~~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~k~G~~~~ 65 (112)
+..|.+ ||+|.+|+.+|+++|.+++||.++.+|+.+++++|..+ .+.+.|.+.+.+.||.+.
T Consensus 4 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~ 69 (71)
T 2ldi_A 4 TQQMQVGGMRCAACASSIERALERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAALGYTLA 69 (71)
T ss_dssp EEEEEEETCTTSGGGHHHHTGGGGCSSEEEEEEETTTTEEEEEECTTTCCTHHHHHHHHTTTCEEE
T ss_pred EEEEEECCccCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCcc
Confidence 445666 99999999999999999999999999999999999864 567889999999999764
No 31
>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana}
Probab=99.30 E-value=2.4e-11 Score=75.77 Aligned_cols=70 Identities=23% Similarity=0.370 Sum_probs=61.1
Q ss_pred eeEEEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee---CCHHHHHHHHHhcCCceEEecCCCC
Q 035968 3 KKTIVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD---ADPVKIIKKVREFRKSAAIESIGPP 72 (112)
Q Consensus 3 ~~~~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~k~G~~~~~~~~~~~ 72 (112)
.+..|.+ ||+|.+|+.+|+++|..++||..+.+|+.+++++|.++ ++.+.|...|..+||.+.+...+..
T Consensus 16 ~~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~~~ 89 (95)
T 2kkh_A 16 QKSYFDVLGICCTSEVPIIENILKSLDGVKEYSVIVPSRTVIVVHDSLLISPFQIAKALNEARLEANVRVNGET 89 (95)
T ss_dssp EEEEEEETTCCTTTTHHHHHHHHHHSSSEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCCEEESCCCCC
T ss_pred EEEEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCCceEEecCCCc
Confidence 3556777 99999999999999999999999999999999999865 4788999999999999887655443
No 32
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=99.29 E-value=1.5e-11 Score=81.45 Aligned_cols=63 Identities=21% Similarity=0.356 Sum_probs=57.3
Q ss_pred eEEEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee---CCHHHHHHHHHhcCCceEE
Q 035968 4 KTIVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD---ADPVKIIKKVREFRKSAAI 66 (112)
Q Consensus 4 ~~~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~k~G~~~~~ 66 (112)
++.|.+ ||+|.+|+++|+++|++++||.++.+|+.+++++|.++ ++++.|.++|.++||.+.+
T Consensus 81 ~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~ 147 (149)
T 2ew9_A 81 NIELTITGMTCASCVHNIESKLTRTNGITYASVALATSKALVKFDPEIIGPRDIIKIIEEIGFHASL 147 (149)
T ss_dssp EEEEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETTTTEEEEECCTTTSCHHHHHHHHHHHTCEEEC
T ss_pred eeEEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEECCCCCCHHHHHHHHHhCCCceEe
Confidence 456777 99999999999999999999999999999999999875 5789999999999998765
No 33
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=99.29 E-value=1.7e-11 Score=79.12 Aligned_cols=64 Identities=19% Similarity=0.360 Sum_probs=57.6
Q ss_pred eeEEEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee---CCHHHHHHHHHhcCCceEE
Q 035968 3 KKTIVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD---ADPVKIIKKVREFRKSAAI 66 (112)
Q Consensus 3 ~~~~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~k~G~~~~~ 66 (112)
.++.|.+ ||+|.+|+++|+++|++++||..+.+|+.+++++|.++ ++.+.|.+.|.++||.+..
T Consensus 8 ~~~~l~v~Gm~C~~Ca~~Ie~~L~~~~GV~~v~v~~~~~~~~V~~~~~~~~~~~i~~~i~~~Gy~~~~ 75 (111)
T 2ofg_X 8 KTQQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAALGYTLAE 75 (111)
T ss_dssp EEEEEEESCCCGGGTHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTTCSHHHHHHHHHTTTCCEEC
T ss_pred eEEEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEECCCCEEEEEECCCCCCHHHHHHHHHHcCCeeee
Confidence 4566777 99999999999999999999999999999999999875 5778999999999998754
No 34
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=99.28 E-value=1.7e-11 Score=81.57 Aligned_cols=67 Identities=19% Similarity=0.327 Sum_probs=59.9
Q ss_pred eEEEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee---CCHHHHHHHHHhcCCceEEecCC
Q 035968 4 KTIVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD---ADPVKIIKKVREFRKSAAIESIG 70 (112)
Q Consensus 4 ~~~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~k~G~~~~~~~~~ 70 (112)
.+.|.+ ||+|.+|+++|+++|.+++||.++.+|+.+++++|.++ +++..|.++|+++||.+.+....
T Consensus 75 ~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~ 145 (151)
T 1p6t_A 75 KAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKLKGEQ 145 (151)
T ss_dssp EEEEEESSCCSSSHHHHHHHHHTTSSSEEECCEETTTTEEEEEECTTTCCHHHHHHHHHHHTCCEEESCSS
T ss_pred ccEEEecCCCCHHHHHHHHHHHhcCCCceEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCCCeEEcCcc
Confidence 456777 99999999999999999999999999999999999864 68899999999999998875443
No 35
>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1
Probab=99.26 E-value=3.7e-11 Score=87.03 Aligned_cols=69 Identities=23% Similarity=0.467 Sum_probs=62.2
Q ss_pred eEEEeecccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEeeCCHHHHHHHHHhcCCceEEecCCCC
Q 035968 4 KTIVSVKLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGDADPVKIIKKVREFRKSAAIESIGPP 72 (112)
Q Consensus 4 ~~~~~vgm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~k~G~~~~~~~~~~~ 72 (112)
++.|.+.|+|.+|+++|+++|++++||.++.+|+.+++++|.+..+++.|.++|+++||.+.++..+.+
T Consensus 7 ~~~l~V~MtC~~Ca~~IekaL~~l~GV~~v~Vnl~~~~v~V~~~~~~~~I~~aI~~~Gy~a~~~~~~~~ 75 (222)
T 1qup_A 7 EATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDAIIRGAGKP 75 (222)
T ss_dssp EEEEECCCCSTTHHHHHHHHHTTCTTEEEEEEETTTTEEEEEESSCHHHHHHHHHHTTCCCEEECCSCT
T ss_pred EEEEEEccccHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEeccCCHHHHHHHHHHcCCccccccCCCc
Confidence 445676799999999999999999999999999999999999888999999999999999988765443
No 36
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=99.23 E-value=5.3e-11 Score=78.70 Aligned_cols=68 Identities=16% Similarity=0.368 Sum_probs=60.0
Q ss_pred CceeEEEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee---CCHHHHHHHHHhcCCceEEec
Q 035968 1 MAKKTIVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD---ADPVKIIKKVREFRKSAAIES 68 (112)
Q Consensus 1 m~~~~~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~k~G~~~~~~~ 68 (112)
=|+++.|.+ ||+|.+|+++|+++|.+++||.++.+|+.++++.|.++ .+++.|.+.|.+.||.+.+..
T Consensus 2 ~~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~~ 73 (149)
T 2ew9_A 2 APQKCFLQIKGMTCASCVSNIERNLQKEAGVLSVLVALMAGKAEIKYDPEVIQPLEIAQFIQDLGFEAAVME 73 (149)
T ss_dssp CCEEEEEEEECCCSSSHHHHHHHHHHTTSSCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCEEEECS
T ss_pred CcEEEEEEECCeecHHHHHHHHHHHhcCCCcEEEEEEecCCEEEEEEcCCCCCHHHHHHHHhcCCCceEeec
Confidence 067778888 99999999999999999999999999999999999864 577899999999999887643
No 37
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=99.18 E-value=1.4e-10 Score=81.36 Aligned_cols=66 Identities=21% Similarity=0.465 Sum_probs=58.5
Q ss_pred eEEEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee---CCHHHHHHHHHhcCCceEEecC
Q 035968 4 KTIVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD---ADPVKIIKKVREFRKSAAIESI 69 (112)
Q Consensus 4 ~~~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~k~G~~~~~~~~ 69 (112)
++.|.+ ||+|.+|+.+|+++|.+++||..+.+|+.+++++|.++ ++++.|.+.|.++||.+.++..
T Consensus 123 ~~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~ 192 (202)
T 2rop_A 123 TTLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLAEGTATVLYNPAVISPEELRAAIEDMGFEASVVSE 192 (202)
T ss_dssp EEEEEESCCCSTHHHHHHHHHGGGSSSEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTSCEEEC--
T ss_pred EEEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCCceEEcCC
Confidence 456777 99999999999999999999999999999999999864 5789999999999999887654
No 38
>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1
Probab=99.18 E-value=9.2e-11 Score=86.32 Aligned_cols=69 Identities=23% Similarity=0.467 Sum_probs=62.0
Q ss_pred eEEEeecccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEeeCCHHHHHHHHHhcCCceEEecCCCC
Q 035968 4 KTIVSVKLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGDADPVKIIKKVREFRKSAAIESIGPP 72 (112)
Q Consensus 4 ~~~~~vgm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~k~G~~~~~~~~~~~ 72 (112)
++.|.+.|+|.+|+++|+++|++++||.++.+|+.+++++|.+..+++.|.++|+++||.+.+.....+
T Consensus 8 ~~~l~V~MtC~~Ca~~IekaL~~l~GV~~v~Vnl~~~~v~V~~~~~~~~I~~aIe~~Gy~a~~~~~~~~ 76 (249)
T 1jk9_B 8 EATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDAIIRGAGKP 76 (249)
T ss_dssp EEEEECCCCSSSHHHHHHHHHTTCTTEEEEEEETTTTEEEEEESSCHHHHHHHHHTTTCCCEEEEESST
T ss_pred eEEEEEeeccHHHHHHHHHHHhccCCeeEEEEEcCCCeEEEecCCCHHHHHHHHHHhCCCcccccCCcc
Confidence 356676799999999999999999999999999999999999888999999999999999988765443
No 39
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=98.90 E-value=7.5e-09 Score=68.57 Aligned_cols=63 Identities=22% Similarity=0.418 Sum_probs=54.9
Q ss_pred ceeEEEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee---CCHHHHHHHHHhcCCce
Q 035968 2 AKKTIVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD---ADPVKIIKKVREFRKSA 64 (112)
Q Consensus 2 ~~~~~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~k~G~~~ 64 (112)
+.+..|.+ ||+|.+|+.+|+++|.+++||..+.+|+.++++.|..+ .++..|.+.+.+.||.+
T Consensus 5 ~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~ 71 (151)
T 1p6t_A 5 QKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGYHV 71 (151)
T ss_dssp CEEEEEEEESCCSSHHHHHHHHHHTTSSSEEEEEEEGGGTEEEEEECTTTSCHHHHHHHHHHHTCEE
T ss_pred ceEEEEEECCCcCHHHHHHHHHHHhcCCCeeEEEEEccCCEEEEEEcCCcCCHHHHHHHHHHcCCcc
Confidence 34456777 99999999999999999999999999999999998754 57788999999999964
No 40
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=98.86 E-value=6.2e-09 Score=72.86 Aligned_cols=63 Identities=19% Similarity=0.346 Sum_probs=54.6
Q ss_pred eeEEEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee---CCHHHHHHHHHhc---CCceE
Q 035968 3 KKTIVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD---ADPVKIIKKVREF---RKSAA 65 (112)
Q Consensus 3 ~~~~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~k~---G~~~~ 65 (112)
.++.|.+ ||+|.+|+++|+++|.+++||.++.+|+.+++++|.++ ++++.|...|.++ ||.+.
T Consensus 20 ~~~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~~~gg~~v~ 89 (202)
T 2rop_A 20 VTLQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVKYDPSCTSPVALQRAIEALPPGNFKVS 89 (202)
T ss_dssp CEEEEEEESGGGSTHHHHHHHHTTSBTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHTTSSSSCSEEE
T ss_pred EEEEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHhccCCeEEE
Confidence 3456777 99999999999999999999999999999999999865 5788899999988 35553
No 41
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=98.78 E-value=2.4e-08 Score=82.49 Aligned_cols=63 Identities=19% Similarity=0.323 Sum_probs=56.8
Q ss_pred EEEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee---CCHHHHHHHHHhcCCceEEe
Q 035968 5 TIVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD---ADPVKIIKKVREFRKSAAIE 67 (112)
Q Consensus 5 ~~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~k~G~~~~~~ 67 (112)
..+.+ ||+|.+|+++|+++|++++||.++++|+.+++++|.++ .++++|.+++++.||++...
T Consensus 4 ~~l~V~GM~Ca~Ca~~Ie~~L~~~~GV~~v~Vnl~~~~~~V~~d~~~~~~~~i~~ai~~~Gy~~~~~ 70 (723)
T 3j09_A 4 RTVRVTGMTCAMCVKSIETAVGSLEGVEEVRVNLATETAFIRFDEKRIDFETIKRVIEDLGYGVVDE 70 (723)
T ss_dssp EEEEEETCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHCCEESSC
T ss_pred EEEEeCCCCchHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEeCCCcCCHHHHHHHHHhcCCccccc
Confidence 35666 99999999999999999999999999999999999864 68999999999999987543
No 42
>4gwb_A Peptide methionine sulfoxide reductase MSRA 3; structural genomics, protein structure initiative, nysgrc, R PSI-biology; 1.20A {Sinorhizobium meliloti}
Probab=93.93 E-value=0.17 Score=34.83 Aligned_cols=55 Identities=20% Similarity=0.308 Sum_probs=43.7
Q ss_pred CceeEEEeecccChhHHHHHHHHHHccCCccEEEEecCCC---------------EEEEEee---CCHHHHHHHHHhc
Q 035968 1 MAKKTIVSVKLLCLKCRQKVMKLIAKLEGITSIVIDPSKN---------------TVTVIGD---ADPVKIIKKVREF 60 (112)
Q Consensus 1 m~~~~~~~vgm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~---------------~v~V~~~---~~~~~i~~~i~k~ 60 (112)
|.++++|- +||=+-++..+.+++||.++.+-..+| -|.|..| ++.++|++...+.
T Consensus 1 Mte~A~fa-----gGCFWg~E~~f~~l~GV~~t~~GYagG~~~nPtY~~v~~HaE~V~V~yDp~~isy~~LL~~F~~~ 73 (168)
T 4gwb_A 1 MTKRAVLA-----GGCFWGMQDLIRKLPGVIETRVGYTGGDVPNATYRNHGTHAEGIEIIFDPERISYRRILELFFQI 73 (168)
T ss_dssp -CEEEEEE-----ESCHHHHHHHHTTSTTEEEEEEEEESSSCTTCBTTBCTTCEEEEEEEECTTTCCHHHHHHHHHHH
T ss_pred CceEEEEE-----ccCccchHHHHhcCCCeEEEEEEcCCCcCCCCcccccCceEEEEEEEECCCCCCHHHHHHHHHhh
Confidence 77777776 678888999999999999999887655 5567776 7889999988754
No 43
>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1
Probab=93.45 E-value=0.19 Score=31.77 Aligned_cols=50 Identities=16% Similarity=0.278 Sum_probs=37.4
Q ss_pred HHHHHHHccCCccEEEE-----ecCCCEE--EEEee-CCHHHHHHHHHhcCCceEEec
Q 035968 19 KVMKLIAKLEGITSIVI-----DPSKNTV--TVIGD-ADPVKIIKKVREFRKSAAIES 68 (112)
Q Consensus 19 kI~k~L~~~~GV~~v~v-----d~~~~~v--~V~~~-~~~~~i~~~i~k~G~~~~~~~ 68 (112)
.+-+.|.+++||..|.+ |..+..+ +|+|+ ++.+.|.++|++.|--++.+.
T Consensus 23 dlA~~l~~~~gV~gVnItV~EvD~eTe~lkItIEG~dIdfd~I~~~IE~~GgvIHSID 80 (100)
T 3bpd_A 23 VFALKLSELENVDGVNIHLSEIDQATENIKITILGNNLDYEQIKGVIEDMGGVIHSVD 80 (100)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEEEEEECHHHHHHHHHTTTCEEEEEE
T ss_pred HHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCCeEEeee
Confidence 45678999999987654 3444444 45676 999999999999998776553
No 44
>2x3d_A SSO6206; unknown function; 2.70A {Sulfolobus solfataricus}
Probab=93.37 E-value=0.23 Score=31.12 Aligned_cols=50 Identities=20% Similarity=0.205 Sum_probs=37.6
Q ss_pred HHHHHHHccCCccEEEE-----ecCCCEE--EEEee-CCHHHHHHHHHhcCCceEEec
Q 035968 19 KVMKLIAKLEGITSIVI-----DPSKNTV--TVIGD-ADPVKIIKKVREFRKSAAIES 68 (112)
Q Consensus 19 kI~k~L~~~~GV~~v~v-----d~~~~~v--~V~~~-~~~~~i~~~i~k~G~~~~~~~ 68 (112)
.+-+.|.+++||..|.+ |..+..+ +|+|+ ++.+.|.++|++.|--.+.+.
T Consensus 22 d~A~~l~~~~gV~gVnItv~EvD~eTe~lkItIEG~~idfd~I~~~IE~~Gg~IHSID 79 (96)
T 2x3d_A 22 DLAERISKLDGVEGVNISVTDMDVETMGLMIIIEGTSLNFDDIRKMLEEEGCAIHSID 79 (96)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEEESSCCHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCCeEEeee
Confidence 45678899999987654 3444444 45676 999999999999998777654
No 45
>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1
Probab=93.22 E-value=0.21 Score=31.41 Aligned_cols=50 Identities=18% Similarity=0.360 Sum_probs=37.6
Q ss_pred HHHHHHHccCCccEEEE-----ecCCCEEE--EEee-CCHHHHHHHHHhcCCceEEec
Q 035968 19 KVMKLIAKLEGITSIVI-----DPSKNTVT--VIGD-ADPVKIIKKVREFRKSAAIES 68 (112)
Q Consensus 19 kI~k~L~~~~GV~~v~v-----d~~~~~v~--V~~~-~~~~~i~~~i~k~G~~~~~~~ 68 (112)
.+-+.|.+++||..|.+ |..+..+. |+|+ ++.+.|.++|++.|.-.+.+.
T Consensus 23 d~A~~l~~~~gV~gVnItv~EvD~eTe~lkitiEG~~id~d~I~~~IE~~Gg~IHSID 80 (97)
T 2raq_A 23 EYAKYLSELRGVEGVNITLMEIDKETENIKVTIQGNDLDFDEITRAIESYGGSIHSVD 80 (97)
T ss_dssp HHHHHHHHSTTCCEEEEEEEEECSSCEEEEEEEECSSCCHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCCeEEeee
Confidence 45667888999887654 44555554 5575 999999999999998777654
No 46
>1jdq_A TM006 protein, hypothetical protein TM0983; structural genomics; NMR {Thermotoga maritima} SCOP: d.68.3.3
Probab=89.96 E-value=2.2 Score=26.45 Aligned_cols=55 Identities=11% Similarity=0.129 Sum_probs=40.7
Q ss_pred EEEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee--CCHHHHHHHHHhcCCceEEec
Q 035968 5 TIVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD--ADPVKIIKKVREFRKSAAIES 68 (112)
Q Consensus 5 ~~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~--~~~~~i~~~i~k~G~~~~~~~ 68 (112)
..+.. |+.|+.=.-+++++|.+++. .+.+.|..+ .....|.+.+++.|+.+....
T Consensus 27 ~~LD~rGl~CP~Pvl~tkkaL~~l~~---------Ge~L~Vl~dd~~a~~dI~~~~~~~G~~v~~~e 84 (98)
T 1jdq_A 27 KTLDVRGEVCPVPDVETKRALQNMKP---------GEILEVWIDYPMSKERIPETVKKLGHEVLEIE 84 (98)
T ss_dssp EEEECSSCCSSHHHHHHHHHHHTCCT---------TCEEEEEESSCTHHHHHHHHHHHSSCCEEEEE
T ss_pred EEEeCCCCCCCHHHHHHHHHHHhCCC---------CCEEEEEECCccHHHHHHHHHHHCCCEEEEEE
Confidence 34565 99999999999999998652 233444433 456889999999999876543
No 47
>3lvj_C Sulfurtransferase TUSA; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 2.44A {Escherichia coli} SCOP: d.68.3.3 PDB: 3lvk_B* 1dcj_A
Probab=89.81 E-value=2 Score=25.50 Aligned_cols=54 Identities=17% Similarity=0.162 Sum_probs=39.6
Q ss_pred EEEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee--CCHHHHHHHHHhcCCceEEe
Q 035968 5 TIVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD--ADPVKIIKKVREFRKSAAIE 67 (112)
Q Consensus 5 ~~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~--~~~~~i~~~i~k~G~~~~~~ 67 (112)
..+-. |+.|+.-.-+++++|.+++. .+.+.|..+ .....|.+.+++.||.....
T Consensus 11 ~~lD~rGl~CP~Pvl~~kkal~~l~~---------G~~l~V~~dd~~a~~di~~~~~~~G~~~~~~ 67 (82)
T 3lvj_C 11 HTLDALGLRCPEPVMMVRKTVRNMQP---------GETLLIIADDPATTRDIPGFCTFMEHELVAK 67 (82)
T ss_dssp EEEECTTCCTTHHHHHHHHHHHTSCT---------TCEEEEEECCTTHHHHHHHHHHHTTCEEEEE
T ss_pred EEEECCCCCCCHHHHHHHHHHHhCCC---------CCEEEEEECCccHHHHHHHHHHHCCCEEEEE
Confidence 45565 99999999999999998752 233444332 45578999999999977554
No 48
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=88.91 E-value=2 Score=26.59 Aligned_cols=47 Identities=15% Similarity=0.282 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHccCCccEEEEecCCCEEEEEee-CCHHHHHHHHHhcC
Q 035968 15 KCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD-ADPVKIIKKVREFR 61 (112)
Q Consensus 15 ~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~-~~~~~i~~~i~k~G 61 (112)
+=...+.++|.+++|++-..++..++++.|+-. -+...+.+.|.++.
T Consensus 17 ~~~~~V~~~L~~ipgvEi~~~~~~~GkiVV~iEa~~~~~l~~~i~~I~ 64 (95)
T 2jsx_A 17 ERISDISTQLNAFPGCEVAVSDAPSGQLIVVVEAEDSETLIQTIESVR 64 (95)
T ss_dssp TSHHHHHHHHTTSTTEEEEEEETTTTEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHCCCCeEEEEecCCCCCEEEEEEeCCHHHHHHHHHHHh
Confidence 346789999999999964445666788887643 56666666666544
No 49
>1je3_A EC005, hypothetical 8.6 kDa protein in AMYA-FLIE intergenic region; mixed alpha-beta structure, structural genomics; NMR {Escherichia coli} SCOP: d.68.3.3
Probab=87.87 E-value=1.3 Score=27.57 Aligned_cols=55 Identities=11% Similarity=0.073 Sum_probs=39.2
Q ss_pred eEEEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee--CCHHHHHHHHHhcCCceEEe
Q 035968 4 KTIVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD--ADPVKIIKKVREFRKSAAIE 67 (112)
Q Consensus 4 ~~~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~--~~~~~i~~~i~k~G~~~~~~ 67 (112)
...+.. |+.|+.=.-+++++|.+++. .+.+.|..+ ....+|.+.+++.|+.....
T Consensus 27 ~~~LD~rGl~CP~PvlktkkaL~~l~~---------Ge~L~Vl~dd~~a~~dIp~~~~~~G~~v~~~ 84 (97)
T 1je3_A 27 DYRLDMVGEPCPYPAVATLEAMPQLKK---------GEILEVVSDCPQSINNIPLDARNHGYTVLDI 84 (97)
T ss_dssp EEEECSBCCSSSSSTHHHHHHTTTCCS---------SCEEEEEEBCSSSSCHHHHHHHHHTCSEEEE
T ss_pred CeEEeCCCCCCCHHHHHHHHHHHcCCC---------CCEEEEEECCcchHHHHHHHHHHCCCEEEEE
Confidence 345555 99999999999999998652 223333322 45578999999999987553
No 50
>1fvg_A Peptide methionine sulfoxide reductase; oxidoreductase; 1.60A {Bos taurus} SCOP: d.58.28.1 PDB: 1fva_A 2l90_A*
Probab=85.89 E-value=2.1 Score=30.19 Aligned_cols=47 Identities=17% Similarity=0.145 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHccCCccEEEEecCCCE-------------------EEEEee---CCHHHHHHHHHhc
Q 035968 14 LKCRQKVMKLIAKLEGITSIVIDPSKNT-------------------VTVIGD---ADPVKIIKKVREF 60 (112)
Q Consensus 14 ~~C~~kI~k~L~~~~GV~~v~vd~~~~~-------------------v~V~~~---~~~~~i~~~i~k~ 60 (112)
+||-+-++..+.+++||.++.+-..++. |.|.+| ++.++|++...+.
T Consensus 50 gGCFWg~E~~F~~l~GV~~t~vGYagG~~~nPtY~~Vcsg~TGHaEaV~V~yDp~~isy~~LL~~F~~~ 118 (199)
T 1fvg_A 50 MGCFWGAERKFWTLKGVYSTQVGFAGGYTPNPTYKEVCSGKTGHAEVVRVVFQPEHISFEELLKVFWEN 118 (199)
T ss_dssp ESSHHHHHHHHHTSTTEEEEEEEEESSSCSSCCHHHHHHTCSCCEEEEEEEECTTTSCHHHHHHHHHHT
T ss_pred cCCeeeeHHHHhhCCCeEEEEeeccCCCCCCCChhheecCCCCCeEEEEEEECCCcCCHHHHHHHHHHh
Confidence 5677778888999999999998865554 667776 6889999988764
No 51
>3bqh_A PILB, peptide methionine sulfoxide reductase MSRA/MSRB; methionine sulfoxide reductase A, oxidized form, elect transport; 1.95A {Neisseria meningitidis} PDB: 3bqe_A 3bqf_A* 3bqg_A
Probab=85.27 E-value=2.2 Score=29.89 Aligned_cols=47 Identities=15% Similarity=0.168 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHccCCccEEEEecCCCE-------------------EEEEee---CCHHHHHHHHHhc
Q 035968 14 LKCRQKVMKLIAKLEGITSIVIDPSKNT-------------------VTVIGD---ADPVKIIKKVREF 60 (112)
Q Consensus 14 ~~C~~kI~k~L~~~~GV~~v~vd~~~~~-------------------v~V~~~---~~~~~i~~~i~k~ 60 (112)
+||-+-++..+.+++||.++.+-..+|. |.|.+| ++.++|++...+.
T Consensus 9 gGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtY~~Vc~g~tGHaEaV~V~yDp~~isy~~LL~~f~~~ 77 (193)
T 3bqh_A 9 GGCFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVSYRHTGHAETVKVTYDADKLSLDDILQYFFRV 77 (193)
T ss_dssp ESCHHHHHHHHHTSTTEEEEEEEEESCSSSSCCHHHHHHSCCCCEEEEEEEEETTTCCHHHHHHHHHHH
T ss_pred cCCeeehHHHHhcCCCEEEEEEeccCCcCCCCChheeecCCCCCeEEEEEEECCCcCCHHHHHHHHHHh
Confidence 6777778888999999999988765443 567766 6888999888754
No 52
>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}
Probab=84.11 E-value=2.2 Score=32.13 Aligned_cols=54 Identities=13% Similarity=0.167 Sum_probs=42.0
Q ss_pred ceeEEEeecccChhHHHHHHHHHHccCCccEEEEecCCCE-----------------EEEEee---CCHHHHHHHHHhc
Q 035968 2 AKKTIVSVKLLCLKCRQKVMKLIAKLEGITSIVIDPSKNT-----------------VTVIGD---ADPVKIIKKVREF 60 (112)
Q Consensus 2 ~~~~~~~vgm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~-----------------v~V~~~---~~~~~i~~~i~k~ 60 (112)
|++++|- +||-+-++..+.+++||.++.+-..++. |.|+.| ++.++|++...+.
T Consensus 2 ~~~a~fa-----gGCFWg~E~~F~~l~GV~~t~~GYagG~~~nPtY~~Vc~TGHaEaV~V~yDp~~isy~~LL~~f~~~ 75 (313)
T 3e0m_A 2 MAEIYLA-----GGCFWGLEEYFSRISGVLETSVGYANGQVETTNYQLLKETDHAETVQVIYDEKEVSLREILLYYFRV 75 (313)
T ss_dssp CEEEEEE-----CSCHHHHHHHHTTSTTEEEEEEEEESCSSSCCCTTTHHHHTCEEEEEEEECTTTSCHHHHHHHHHHH
T ss_pred ccEEEEe-----cCCchhhHHHHhhCCCeEEeecccCCCCCCCCChhhhccCCCeEEEEEEECCCcCCHHHHHHHHHhh
Confidence 5566665 6788888999999999999998876553 667776 7889999888754
No 53
>1ff3_A Peptide methionine sulfoxide reductase; alpha beta roll, PMSR, MSRA, oxidoreductase; 1.90A {Escherichia coli} SCOP: d.58.28.1 PDB: 2gt3_A 2iem_A
Probab=82.46 E-value=3.6 Score=29.20 Aligned_cols=47 Identities=17% Similarity=0.164 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHccCCccEEEEecCCC-------------------EEEEEee---CCHHHHHHHHHhc
Q 035968 14 LKCRQKVMKLIAKLEGITSIVIDPSKN-------------------TVTVIGD---ADPVKIIKKVREF 60 (112)
Q Consensus 14 ~~C~~kI~k~L~~~~GV~~v~vd~~~~-------------------~v~V~~~---~~~~~i~~~i~k~ 60 (112)
+||-+-++..+.+++||.++.+-..++ -|.|.+| ++.++|++...+.
T Consensus 49 gGCFWg~E~~F~~l~GV~~t~vGYaGG~~~nPtY~~VcsG~TGHaEaV~V~yDp~~isy~~LL~~F~~~ 117 (211)
T 1ff3_A 49 MGXFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWEN 117 (211)
T ss_dssp CSSHHHHHHHHHTSTTEEEEEEEEESSSCSSCCHHHHHHTCSCCEEEEEEEECTTTSCHHHHHHHHHHS
T ss_pred cCCeEEehhhHhcCCCeEEEEeeecCCCCCCCChhhccCCCCCceEEEEEEECCCcCCHHHHHHHHHHh
Confidence 567777888899999999998876543 3567776 6889999988864
No 54
>2j89_A Methionine sulfoxide reductase A; MSRA, poplar, oxidoreductase; 1.7A {Populus trichocarpa}
Probab=81.14 E-value=3.7 Score=30.05 Aligned_cols=47 Identities=17% Similarity=0.140 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHHccCCccEEEEecCCCE-------------------EEEEee---CCHHHHHHHHHhc
Q 035968 14 LKCRQKVMKLIAKLEGITSIVIDPSKNT-------------------VTVIGD---ADPVKIIKKVREF 60 (112)
Q Consensus 14 ~~C~~kI~k~L~~~~GV~~v~vd~~~~~-------------------v~V~~~---~~~~~i~~~i~k~ 60 (112)
+||-+-++..+.+++||.++.+-..+|. |.|.+| ++.++|++...+.
T Consensus 101 gGCFWgvE~~F~~l~GV~~t~vGYaGG~t~nPTYeeVcsG~TGHaEaV~V~YDP~~ISy~~LL~~Fw~~ 169 (261)
T 2j89_A 101 AGCFWGVELAFQRVPGVTKTEVGYTQGLLHNPTYEDVCTGTTNHNEVVRVQYDPKECSFDTLIDVLWAR 169 (261)
T ss_dssp ESSHHHHHHHHHTSTTEEEEEEEEESSSCSSCCHHHHHTTCSCCEEEEEEEECTTTSCHHHHHHHHHHH
T ss_pred cCCeeeeHHHHhhCCCeEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCCcCCHHHHHHHHHHh
Confidence 5777788888999999999998865543 667776 6888999888764
No 55
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=80.85 E-value=1.9 Score=27.00 Aligned_cols=34 Identities=12% Similarity=0.428 Sum_probs=25.1
Q ss_pred EEEeecccChhH------HHHHHHHH-HccCCccEEEEecC
Q 035968 5 TIVSVKLLCLKC------RQKVMKLI-AKLEGITSIVIDPS 38 (112)
Q Consensus 5 ~~~~vgm~C~~C------~~kI~k~L-~~~~GV~~v~vd~~ 38 (112)
+.+.+-++.++| ...|+++| .+++||.+|++++.
T Consensus 46 V~V~ltlt~p~cp~~~~i~~~i~~al~~~l~Gv~~V~V~l~ 86 (108)
T 3lno_A 46 AVITMTMTSIGCPMAGQIVSDVKKVLSTNVPEVNEIEVNVV 86 (108)
T ss_dssp EEEEECCSCTTCTTHHHHHHHHHHHHHHHCTTCCCEEEEEC
T ss_pred EEEEEEECCCCCcHHHHHHHHHHHHHHHhCCCCceEEEEEE
Confidence 445556666666 56788899 89999998887653
No 56
>1nwa_A Peptide methionine sulfoxide reductase MSRA; oxidoreductase, product complex, structural genomics, PSI, protein structure initiative; 1.50A {Mycobacterium tuberculosis} SCOP: d.58.28.1
Probab=80.19 E-value=4.2 Score=28.72 Aligned_cols=47 Identities=21% Similarity=0.223 Sum_probs=36.4
Q ss_pred hhHHHHHHHHHHccCCccEEEEecCCC---------------EEEEEee---CCHHHHHHHHHhc
Q 035968 14 LKCRQKVMKLIAKLEGITSIVIDPSKN---------------TVTVIGD---ADPVKIIKKVREF 60 (112)
Q Consensus 14 ~~C~~kI~k~L~~~~GV~~v~vd~~~~---------------~v~V~~~---~~~~~i~~~i~k~ 60 (112)
+||-+-++..+.+++||.++.+-..+| -|.|.+| ++.++|++...+.
T Consensus 32 gGCFWg~E~~F~~l~GV~~t~vGYaGG~~~nPtYe~~G~HaEaV~V~yDp~~iSy~~LL~~Ff~~ 96 (203)
T 1nwa_A 32 GGCFWGLQDLIRNQPGVVSTRVGYSGGNIPNATYRNHGTHAEAVEIIFDPTVTDYRTLLEFFFQI 96 (203)
T ss_dssp ESCHHHHHHHHTTSTTEEEEEEEEESSSCSSCCSSCCTTCEEEEEEEECTTTCCHHHHHHHHHHH
T ss_pred cCCeeeeHHHHhcCCCeEEEEeeecCCCCCCCChhhcCCceEEEEEEECCCcCCHHHHHHHHHHh
Confidence 567777788899999999999876544 4556766 6888999888763
No 57
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=78.67 E-value=2.2 Score=26.30 Aligned_cols=33 Identities=18% Similarity=0.430 Sum_probs=24.2
Q ss_pred EEEeecccChhH------HHHHHHHHHccCCccEEEEec
Q 035968 5 TIVSVKLLCLKC------RQKVMKLIAKLEGITSIVIDP 37 (112)
Q Consensus 5 ~~~~vgm~C~~C------~~kI~k~L~~~~GV~~v~vd~ 37 (112)
+.+.+.+++++| ...|+++|.+++||.++++++
T Consensus 43 V~v~l~lt~~~cp~~~~l~~~i~~al~~l~gv~~V~V~l 81 (103)
T 3cq1_A 43 AYVRMTLTTPGCPLHDSLGEAVRQALSRLPGVEEVEVEV 81 (103)
T ss_dssp EEEEECCSSSSCCSSCHHHHHHHHHHHTSTTCCEEEEEE
T ss_pred EEEEEEECCCCCcHHHHHHHHHHHHHHhCCCceeEEEEE
Confidence 345556666666 357899999999999988874
No 58
>3hz7_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Desulfitobacterium hafniense}
Probab=78.65 E-value=5.9 Score=23.81 Aligned_cols=52 Identities=17% Similarity=0.147 Sum_probs=38.3
Q ss_pred Eee-cccChhHHHHHHHHHHccC-CccEEEEecCCCEEEEEee--CCHHHHHHHHHhcCCceEEe
Q 035968 7 VSV-KLLCLKCRQKVMKLIAKLE-GITSIVIDPSKNTVTVIGD--ADPVKIIKKVREFRKSAAIE 67 (112)
Q Consensus 7 ~~v-gm~C~~C~~kI~k~L~~~~-GV~~v~vd~~~~~v~V~~~--~~~~~i~~~i~k~G~~~~~~ 67 (112)
+.. |+.|+.-.-+++++|.+++ .- +.+.|..+ ....+|.+.+++.|+.+...
T Consensus 4 lD~rGl~CP~Pvl~~kkal~~l~~~G---------~~L~V~~dd~~a~~dI~~~~~~~G~~v~~~ 59 (87)
T 3hz7_A 4 IDALGQVCPIPVIRAKKALAELGEAG---------GVVTVLVDNDISRQNLQKMAEGMGYQSEYL 59 (87)
T ss_dssp EECTTCCTTHHHHHHHHHHHTTGGGC---------CEEEEEESSHHHHHHHHHHHHHHTCEEEEE
T ss_pred EEcCCCCCCHHHHHHHHHHHhccCCC---------CEEEEEECCccHHHHHHHHHHHCCCEEEEE
Confidence 455 9999999999999999873 21 23333332 45678999999999987554
No 59
>1pav_A Hypothetical protein TA1170/TA1414; structural genomics, structure, fast NMR, semiautomated analysis; NMR {Thermoplasma acidophilum} SCOP: d.68.3.3
Probab=75.94 E-value=1.4 Score=25.79 Aligned_cols=51 Identities=6% Similarity=0.055 Sum_probs=36.5
Q ss_pred EEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee--CCHHHHHHHHHhcCCceE
Q 035968 6 IVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD--ADPVKIIKKVREFRKSAA 65 (112)
Q Consensus 6 ~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~--~~~~~i~~~i~k~G~~~~ 65 (112)
.+-. |+.|+.=.-+++++|.+++.- +.+.|..+ .....|.+.+++.|+...
T Consensus 8 ~lD~rGl~CP~Pvl~~k~al~~l~~G---------~~L~V~~dd~~a~~di~~~~~~~G~~~~ 61 (78)
T 1pav_A 8 VIDARGSYCPGPLMELIKAYKQAKVG---------EVISVYSTDAGTKKDAPAWIQKSGQELV 61 (78)
T ss_dssp CCCBSSCSSCTTHHHHHHHHTTSCTT---------CCEECCBSSSCHHHHHHHHHHHHTEEEC
T ss_pred EEECCCCCCCHHHHHHHHHHHcCCCC---------CEEEEEECCccHHHHHHHHHHHCCCEEE
Confidence 3445 999999999999999987522 22333332 446789999999998654
No 60
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}
Probab=72.20 E-value=7.8 Score=22.29 Aligned_cols=35 Identities=23% Similarity=0.324 Sum_probs=22.6
Q ss_pred CceeEEEeecccChhHHHHHHHHHHccCCccEEEEec
Q 035968 1 MAKKTIVSVKLLCLKCRQKVMKLIAKLEGITSIVIDP 37 (112)
Q Consensus 1 m~~~~~~~vgm~C~~C~~kI~k~L~~~~GV~~v~vd~ 37 (112)
||.++++-..-.|+.|. +++..|... |+.-..+|.
T Consensus 4 ~m~~v~ly~~~~C~~C~-~~~~~L~~~-~i~~~~~di 38 (92)
T 2khp_A 4 SMVDVIIYTRPGCPYCA-RAKALLARK-GAEFNEIDA 38 (92)
T ss_dssp CCCCEEEEECTTCHHHH-HHHHHHHHT-TCCCEEEES
T ss_pred CcccEEEEECCCChhHH-HHHHHHHHc-CCCcEEEEC
Confidence 66666666677899998 566677654 554334443
No 61
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=68.27 E-value=5.3 Score=24.47 Aligned_cols=33 Identities=18% Similarity=0.358 Sum_probs=23.2
Q ss_pred EEEeecccChhH------HHHHHHHHHccCCccEEEEec
Q 035968 5 TIVSVKLLCLKC------RQKVMKLIAKLEGITSIVIDP 37 (112)
Q Consensus 5 ~~~~vgm~C~~C------~~kI~k~L~~~~GV~~v~vd~ 37 (112)
+.+.+-++.++| ...|+++|.+++||.++++++
T Consensus 44 V~v~l~lt~~~cp~~~~l~~~i~~al~~l~gv~~v~V~l 82 (103)
T 1uwd_A 44 VKVLMTMTTPMCPLAGMILSDAEEAIKKIEGVNNVEVEL 82 (103)
T ss_dssp EEEEECCSSSCCSSHHHHHHHHHHHHHTSSSCCEEEEEE
T ss_pred EEEEEEECCCCCcHHHHHHHHHHHHHHhCCCcceEEEEE
Confidence 344455555555 356888999999999988874
No 62
>3pim_A Peptide methionine sulfoxide reductase; methionine-S-sulfoxide reductase, oxidoreductase; 1.90A {Saccharomyces cerevisiae} PDB: 3pil_A 3pin_B
Probab=63.79 E-value=6.7 Score=27.28 Aligned_cols=47 Identities=9% Similarity=0.058 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHHcc--CCccEEEEecCCC--E-----------------------EEEEee---CCHHHHHHHHHhc
Q 035968 14 LKCRQKVMKLIAKL--EGITSIVIDPSKN--T-----------------------VTVIGD---ADPVKIIKKVREF 60 (112)
Q Consensus 14 ~~C~~kI~k~L~~~--~GV~~v~vd~~~~--~-----------------------v~V~~~---~~~~~i~~~i~k~ 60 (112)
+||=+-++..+.++ +||.++.+-..++ . |.|.+| ++.++|++...+.
T Consensus 26 gGCFWg~E~~F~~l~g~GV~~t~~GYagG~~~~~n~~~~PtY~~Vc~g~TGHaEaV~V~yDp~~isy~~LL~~Ff~~ 102 (187)
T 3pim_A 26 CGCFWGTEHMYRKYLNDRIVDCKVGYANGEESKKDSPSSVSYKRVCGGDTDFAEVLQVSYNPKVITLRELTDFFFRI 102 (187)
T ss_dssp SSCHHHHHHHHHHHHGGGSSEEEEEEEEECCC---------CSCBTTBCTTCEEEEEEEECTTTSCHHHHHHHHTTS
T ss_pred cCCchhhHHHHHHhcCCCeEEEEeeecCCcccCCCCCCCCchhhhccCCCCCeEEEEEEECCccCCHHHHHHHHHHh
Confidence 56667777777778 8999988766544 1 556665 6888888887753
No 63
>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}
Probab=58.40 E-value=11 Score=21.51 Aligned_cols=29 Identities=24% Similarity=0.499 Sum_probs=19.6
Q ss_pred CceeEEEeecccChhHHHHHHHHHHccCCcc
Q 035968 1 MAKKTIVSVKLLCLKCRQKVMKLIAKLEGIT 31 (112)
Q Consensus 1 m~~~~~~~vgm~C~~C~~kI~k~L~~~~GV~ 31 (112)
||.++++-..-.|+.|. +++..|.+. |+.
T Consensus 4 mm~~v~~y~~~~C~~C~-~~~~~L~~~-~i~ 32 (89)
T 2klx_A 4 SMKEIILYTRPNCPYCK-RARDLLDKK-GVK 32 (89)
T ss_dssp CCCCEEEESCSCCTTTH-HHHHHHHHH-TCC
T ss_pred CcceEEEEECCCChhHH-HHHHHHHHc-CCC
Confidence 66666665667899998 466677654 443
No 64
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=58.16 E-value=33 Score=21.83 Aligned_cols=57 Identities=12% Similarity=0.118 Sum_probs=41.3
Q ss_pred eEEEee-cccCh-hHHHHHHHHHHccCCccEEEEecCCCEEEEEeeCCHHHHHHHHHhc
Q 035968 4 KTIVSV-KLLCL-KCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGDADPVKIIKKVREF 60 (112)
Q Consensus 4 ~~~~~v-gm~C~-~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~k~ 60 (112)
..++.+ |+.-. -....|+..+++...|..|++........|.+..++..-.++++++
T Consensus 18 G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~l 76 (121)
T 1owx_A 18 GCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDA 76 (121)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHT
T ss_pred CeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHh
Confidence 345555 66666 7789999999999889988887777777788755344555566654
No 65
>2k1h_A Uncharacterized protein Ser13; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Staphylococcus epidermidis}
Probab=56.37 E-value=23 Score=21.77 Aligned_cols=38 Identities=13% Similarity=0.318 Sum_probs=28.2
Q ss_pred HHHHHHccCCccEEEEecCCCEEEEEe--eCCHHHHHHHHHh
Q 035968 20 VMKLIAKLEGITSIVIDPSKNTVTVIG--DADPVKIIKKVRE 59 (112)
Q Consensus 20 I~k~L~~~~GV~~v~vd~~~~~v~V~~--~~~~~~i~~~i~k 59 (112)
+-+.|-+++||.+|-+ ..+-++|+- +.+.+.|...|..
T Consensus 41 LA~~LF~i~gVk~Vf~--g~dFITVtK~~~~dW~~ikp~I~~ 80 (94)
T 2k1h_A 41 FINRLFEIEGVKSIFY--VLDFISIDKEDNANWNELLPQIEN 80 (94)
T ss_dssp HHHHHHTSTTEEEEEE--ETTEEEEEECTTCCHHHHHHHHHH
T ss_pred HHHHhhCCCCeeEEEE--eCCEEEEecCCCCCHHHHHHHHHH
Confidence 4455668999998766 578888884 3788888877764
No 66
>3pro_C Alpha-lytic protease; Pro region, foldase, protein folding, serine protease, hydro hydrolase inhibitor complex; HET: AES; 1.80A {Lysobacter enzymogenes} SCOP: d.52.1.1 d.52.1.1 PDB: 2pro_A* 4pro_C
Probab=55.52 E-value=39 Score=22.85 Aligned_cols=36 Identities=25% Similarity=0.248 Sum_probs=26.3
Q ss_pred CCccEEEEecCCCEEEEEee-CCHHHHHHHHHhcCCc
Q 035968 28 EGITSIVIDPSKNTVTVIGD-ADPVKIIKKVREFRKS 63 (112)
Q Consensus 28 ~GV~~v~vd~~~~~v~V~~~-~~~~~i~~~i~k~G~~ 63 (112)
.||.++.||..+++|.|+.+ .........++..|-.
T Consensus 114 ~~v~~W~VD~~tN~VVV~a~~~~~~aa~~f~~~AG~~ 150 (166)
T 3pro_C 114 DGVQSWYVDPRSNAVVVKVDDGATDAGVDFVALSGAD 150 (166)
T ss_dssp TTEEEEEEEGGGTEEEEEEETTCHHHHHHHHHHHTCC
T ss_pred CCCceEEEeCCCCeEEEEeCCCChHHHHHHHHHhCCC
Confidence 46789999999999999876 3445555555666643
No 67
>2w7v_A General secretion pathway protein L; transport, type II secretion, transport protein; 2.30A {Vibrio parahaemolyticus}
Probab=54.96 E-value=34 Score=20.99 Aligned_cols=48 Identities=13% Similarity=0.126 Sum_probs=34.7
Q ss_pred HHHHHHHccCCcc--EEEEecCCCEEEEEe---eC-CHHHHHHHHHhcCCceEEe
Q 035968 19 KVMKLIAKLEGIT--SIVIDPSKNTVTVIG---DA-DPVKIIKKVREFRKSAAIE 67 (112)
Q Consensus 19 kI~k~L~~~~GV~--~v~vd~~~~~v~V~~---~~-~~~~i~~~i~k~G~~~~~~ 67 (112)
.+..+|...+++. +++.|-..+.+.+.- ++ ..+.+...+.+ ||.+++-
T Consensus 16 ~L~~~l~~vp~l~~~sLryD~~R~ELrlq~~A~dF~~~E~lr~~l~~-gf~Ve~G 69 (95)
T 2w7v_A 16 ALPATLGQVKDLEITSFKYDGQRGEVRIHARSSDFQPFEQARVKLAE-KFNVEQG 69 (95)
T ss_dssp GHHHHHHTSTTCEEEEEEEETTTTEEEEEEEESSSHHHHHHHHHHHT-TEEEEEC
T ss_pred HHHHHhccCCCceEEEEeecCCCCeEEEEEecCCHHHHHHHHHHhhc-CcEEehh
Confidence 4567788889965 566666888888763 23 46788888866 9988874
No 68
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=54.04 E-value=20 Score=20.87 Aligned_cols=34 Identities=15% Similarity=0.096 Sum_probs=22.7
Q ss_pred eEEEeecccChhHH-----HHHHHHHHccCCccEEEEecC
Q 035968 4 KTIVSVKLLCLKCR-----QKVMKLIAKLEGITSIVIDPS 38 (112)
Q Consensus 4 ~~~~~vgm~C~~C~-----~kI~k~L~~~~GV~~v~vd~~ 38 (112)
++++-.--.|+.|. .++++.|.. .||.-..+|..
T Consensus 3 ~v~ly~~~~C~~c~~~~~~~~ak~~L~~-~~i~~~~~di~ 41 (93)
T 1t1v_A 3 GLRVYSTSVTGSREIKSQQSEVTRILDG-KRIQYQLVDIS 41 (93)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHHHHHHH-TTCCCEEEETT
T ss_pred CEEEEEcCCCCCchhhHHHHHHHHHHHH-CCCceEEEECC
Confidence 45455566799997 788888876 46655455543
No 69
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=52.83 E-value=16 Score=20.01 Aligned_cols=38 Identities=18% Similarity=0.141 Sum_probs=21.6
Q ss_pred CceeEEEeecccChhHHHHH---HHHHHccC-CccEEEEecC
Q 035968 1 MAKKTIVSVKLLCLKCRQKV---MKLIAKLE-GITSIVIDPS 38 (112)
Q Consensus 1 m~~~~~~~vgm~C~~C~~kI---~k~L~~~~-GV~~v~vd~~ 38 (112)
||.++++--.-.|+.|.... ++...+.+ ++.-+.+|..
T Consensus 1 mm~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~ 42 (85)
T 1nho_A 1 MVVNIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIM 42 (85)
T ss_dssp CCCCEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTT
T ss_pred CeEEEEEEECCCCcchHHHHHHHHHHHHHhcCCeEEEEEECC
Confidence 66665555577899996443 33333334 4655566553
No 70
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Probab=45.97 E-value=20 Score=20.37 Aligned_cols=28 Identities=11% Similarity=0.445 Sum_probs=17.5
Q ss_pred ceeEEEeecccChhHHHHHHHHHHccCCcc
Q 035968 2 AKKTIVSVKLLCLKCRQKVMKLIAKLEGIT 31 (112)
Q Consensus 2 ~~~~~~~vgm~C~~C~~kI~k~L~~~~GV~ 31 (112)
|.++.+-..-.|+.|.. ++..|.++ |+.
T Consensus 11 M~~v~ly~~~~Cp~C~~-~~~~L~~~-gi~ 38 (92)
T 3ic4_A 11 MAEVLMYGLSTCPHCKR-TLEFLKRE-GVD 38 (92)
T ss_dssp CSSSEEEECTTCHHHHH-HHHHHHHH-TCC
T ss_pred CceEEEEECCCChHHHH-HHHHHHHc-CCC
Confidence 44455555667999984 66677654 443
No 71
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=42.86 E-value=38 Score=20.14 Aligned_cols=36 Identities=14% Similarity=0.193 Sum_probs=22.8
Q ss_pred Cc-eeEEEeecccChhHHHHHHHHHHccCCccEEEEecC
Q 035968 1 MA-KKTIVSVKLLCLKCRQKVMKLIAKLEGITSIVIDPS 38 (112)
Q Consensus 1 m~-~~~~~~vgm~C~~C~~kI~k~L~~~~GV~~v~vd~~ 38 (112)
|| ..+.+-.--.|+.|.+ +++.|.+ .||.-..+|..
T Consensus 1 M~ta~I~vYs~~~Cp~C~~-aK~~L~~-~gi~y~~idi~ 37 (92)
T 2lqo_A 1 MVTAALTIYTTSWCGYCLR-LKTALTA-NRIAYDEVDIE 37 (92)
T ss_dssp CCSSCEEEEECTTCSSHHH-HHHHHHH-TTCCCEEEETT
T ss_pred CCCCcEEEEcCCCCHhHHH-HHHHHHh-cCCceEEEEcC
Confidence 44 3444455678999995 6666665 57765555543
No 72
>3v4k_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrola metal-binding, nucleus; HET: DNA; 1.38A {Homo sapiens} PDB: 3v4j_A* 3ir2_A* 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A*
Probab=42.03 E-value=24 Score=24.78 Aligned_cols=56 Identities=16% Similarity=0.245 Sum_probs=36.7
Q ss_pred cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEeeCCHHHHHHHHHhcCCceEEecC
Q 035968 10 KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGDADPVKIIKKVREFRKSAAIESI 69 (112)
Q Consensus 10 gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~k~G~~~~~~~~ 69 (112)
---|..|+.+|.+-|.+.++|. ..|- ..++--. +-+-.+=+..|..+|-.+.+.+.
T Consensus 108 WSPC~~CA~~v~~FL~~~~~v~-L~If--~aRLY~~-~~~~~~gLr~L~~aG~~v~iM~~ 163 (203)
T 3v4k_A 108 WSPCFSCAQEMAKFISKNKHVS-LCIK--TARIYDD-QGRCQEGLRTLAEAGAKISIMTY 163 (203)
T ss_pred CCChHHHHHHHHHHHhhCCCeE-EEEE--EEeeccc-CchHHHHHHHHHHCCCeEEecCH
Confidence 4469999999999999988874 2221 1222211 22345567777788988877654
No 73
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=41.97 E-value=28 Score=23.96 Aligned_cols=57 Identities=14% Similarity=0.281 Sum_probs=38.7
Q ss_pred EeecccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEe--eCCHHHHHHHHHhcCCceEEec
Q 035968 7 VSVKLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIG--DADPVKIIKKVREFRKSAAIES 68 (112)
Q Consensus 7 ~~vgm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~--~~~~~~i~~~i~k~G~~~~~~~ 68 (112)
+..--.|..|+..|-.+|.+.+||..|.+-.. .-+ +.....-++.|++.|-.+..+.
T Consensus 88 YvTlePC~~Ca~aIi~al~~~~gI~rVV~~~~-----d~~~~~p~~~~g~~~L~~aGI~V~~~~ 146 (190)
T 2nyt_A 88 YVSSSPCAACADRIIKTLSKTKNLRLLILVGR-----LFMWEEPEIQAALKKLKEAGCKLRIMK 146 (190)
T ss_pred EEEcChHHHHHHHHHHhhhhcCCccEEEEEee-----cCCcCChHHHHHHHHHHHCCCEEEEec
Confidence 33355699999999999999999987755211 000 1112366788899998887653
No 74
>1tac_A TAT protein; transcription regulation, HIV-1, transactivation, RNA binding, structure; NMR {Human immunodeficiency virus 1} SCOP: j.40.1.1
Probab=39.36 E-value=14 Score=22.43 Aligned_cols=16 Identities=19% Similarity=0.227 Sum_probs=13.4
Q ss_pred ccCCCCCCCCCcceEE
Q 035968 85 VPVAPKACQRCDVWYV 100 (112)
Q Consensus 85 ~~~~~~~~~~~~~~~~ 100 (112)
.+|+.+.|+||.++++
T Consensus 24 ~CyCKkCc~HCq~CF~ 39 (86)
T 1tac_A 24 RAHAKKSAYHSQVAFI 39 (86)
T ss_dssp CSSTTTTTTTCCCSCS
T ss_pred CceecchhhhhhHHHc
Confidence 4689999999999864
No 75
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=38.72 E-value=23 Score=20.70 Aligned_cols=18 Identities=11% Similarity=0.062 Sum_probs=16.1
Q ss_pred CCHHHHHHHHHhcCCceE
Q 035968 48 ADPVKIIKKVREFRKSAA 65 (112)
Q Consensus 48 ~~~~~i~~~i~k~G~~~~ 65 (112)
++++.|++.|.+.||.+.
T Consensus 61 id~d~l~~~L~~~g~~~~ 78 (81)
T 2fi0_A 61 TPMDKIVRTLEANGYEVI 78 (81)
T ss_dssp CCHHHHHHHHHHTTCEEE
T ss_pred CCHHHHHHHHHHcCCEee
Confidence 788999999999999764
No 76
>4e6k_G BFD, bacterioferritin-associated ferredoxin; protein complex, iron storage, iron binding, iron mobilizati ferritin, iron homeostasis; HET: HEM; 2.00A {Pseudomonas aeruginosa}
Probab=38.69 E-value=12 Score=21.81 Aligned_cols=20 Identities=20% Similarity=0.393 Sum_probs=16.6
Q ss_pred eecccChhHHHHHHHHHHcc
Q 035968 8 SVKLLCLKCRQKVMKLIAKL 27 (112)
Q Consensus 8 ~vgm~C~~C~~kI~k~L~~~ 27 (112)
+.|+.|+.|...|++.|.+.
T Consensus 33 ~aGt~CG~C~~~i~~il~~~ 52 (73)
T 4e6k_G 33 GVGTQCGKCASLAKQVVRET 52 (73)
T ss_dssp CTTSSSCTTHHHHHHHHHHH
T ss_pred CCCCCCCchHHHHHHHHHHH
Confidence 44788999999999998754
No 77
>1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A
Probab=37.69 E-value=22 Score=21.69 Aligned_cols=39 Identities=28% Similarity=0.346 Sum_probs=27.7
Q ss_pred HHHHHHccCCccEEEEecCCCEEEEEe--eCCHHHHHHHHHhc
Q 035968 20 VMKLIAKLEGITSIVIDPSKNTVTVIG--DADPVKIIKKVREF 60 (112)
Q Consensus 20 I~k~L~~~~GV~~v~vd~~~~~v~V~~--~~~~~~i~~~i~k~ 60 (112)
+-+.|-+++||.+|-+ ..+-++|+- +.+.+.|...|...
T Consensus 41 LA~~LF~i~gVk~Vf~--g~dFITVtK~~~~dW~~ikp~V~~~ 81 (91)
T 1pqx_A 41 FINDILKVEGVKSIFH--VMDFISVDKENDANWETVLPKVEAV 81 (91)
T ss_dssp HHHHHHHSTTEEEEEE--ETTEEEEEECTTSCSTTTHHHHHHH
T ss_pred HHHHhhCCCCeeEEEE--eCCEEEEecCCCCCHHHHHHHHHHH
Confidence 4445557999998766 578888874 36777777777753
No 78
>3gzb_A Putative snoal-like polyketide cyclase; YP_001182657.1, STRU genomics, joint center for structural genomics, JCSG; HET: MSE; 1.44A {Shewanella putrefaciens} PDB: 3lza_A*
Probab=34.97 E-value=42 Score=22.24 Aligned_cols=32 Identities=22% Similarity=0.234 Sum_probs=25.8
Q ss_pred ccCCccEEEEecCCCEEEEEee-CCHHHHHHHH
Q 035968 26 KLEGITSIVIDPSKNTVTVIGD-ADPVKIIKKV 57 (112)
Q Consensus 26 ~~~GV~~v~vd~~~~~v~V~~~-~~~~~i~~~i 57 (112)
++|||..++.|..+.||+=..| .|-..+...+
T Consensus 119 aiPGVTtlklDm~~~Rv~eh~DlmDyqTm~DQl 151 (154)
T 3gzb_A 119 AIPAVTSLKLDMLNRRVTEHVDLIDYQTMSDQL 151 (154)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEECHHHHHHHH
T ss_pred ecCceEEEeecCCccchhhhHhHHhHHHHHHHh
Confidence 5799999999999999997766 5776666554
No 79
>3mi9_C Protein TAT; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Human immunodeficiency virus type 1} PDB: 3mia_C* 1jfw_A 1tbc_A 1tiv_A 1k5k_A
Probab=34.84 E-value=4.2 Score=24.79 Aligned_cols=16 Identities=25% Similarity=0.619 Sum_probs=12.9
Q ss_pred ccCCCCCCCCCcceEE
Q 035968 85 VPVAPKACQRCDVWYV 100 (112)
Q Consensus 85 ~~~~~~~~~~~~~~~~ 100 (112)
.+||.+.|+||.++++
T Consensus 24 ~CYCKkCcyHCq~CFl 39 (86)
T 3mi9_C 24 NCYCKKCCFHCQVCFI 39 (86)
T ss_dssp SCCSTTGGGSSHHHHH
T ss_pred Cccccchhhhhhhhhc
Confidence 4689999999998753
No 80
>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}
Probab=33.06 E-value=90 Score=19.96 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=17.3
Q ss_pred EEEeecccChhHHHHHHHHHHccCCcc
Q 035968 5 TIVSVKLLCLKCRQKVMKLIAKLEGIT 31 (112)
Q Consensus 5 ~~~~vgm~C~~C~~kI~k~L~~~~GV~ 31 (112)
++.-.+..|+.|.+. ...|.+++.|.
T Consensus 18 vv~f~D~~Cp~C~~~-~~~l~~l~~v~ 43 (147)
T 3gv1_A 18 VAVFSDPDCPFCKRL-EHEFEKMTDVT 43 (147)
T ss_dssp EEEEECTTCHHHHHH-HHHHTTCCSEE
T ss_pred EEEEECCCChhHHHH-HHHHhhcCceE
Confidence 344449999999964 55677764443
No 81
>2yy3_A Elongation factor 1-beta; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 2.50A {Pyrococcus horikoshii}
Probab=31.97 E-value=33 Score=20.88 Aligned_cols=21 Identities=14% Similarity=0.273 Sum_probs=18.8
Q ss_pred HHHHHHHHHHccCCccEEEEe
Q 035968 16 CRQKVMKLIAKLEGITSIVID 36 (112)
Q Consensus 16 C~~kI~k~L~~~~GV~~v~vd 36 (112)
-...++.++++++||+++++.
T Consensus 66 ~tD~lee~i~~~e~VqSvdV~ 86 (91)
T 2yy3_A 66 SFDEVAEKFEEVENVESAEVE 86 (91)
T ss_dssp CHHHHHHHHHHSTTEEEEEEE
T ss_pred ccHHHHHHHhcCCCceEEEEE
Confidence 588999999999999999874
No 82
>2cuy_A Malonyl COA-[acyl carrier protein] transacylase; transferase, structural genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=31.80 E-value=1.3e+02 Score=21.62 Aligned_cols=52 Identities=13% Similarity=0.273 Sum_probs=39.0
Q ss_pred HHHHHHHHHccCCccEEEEecCCCEEEEEee-CCHHHHHHHHHhcCCceEEecC
Q 035968 17 RQKVMKLIAKLEGITSIVIDPSKNTVTVIGD-ADPVKIIKKVREFRKSAAIESI 69 (112)
Q Consensus 17 ~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~-~~~~~i~~~i~k~G~~~~~~~~ 69 (112)
...+++.|...+||.-+.+|- .+.++|.|+ ...+.+.+.+++.|..+..+.+
T Consensus 137 ~~~v~~~l~~~~~v~iA~~Ns-p~~~visG~~~~l~~~~~~l~~~g~~~~~L~v 189 (305)
T 2cuy_A 137 LEEIQKALEGLEGVEIANLNA-PEQTVISGRRQAVEEAAERLKERRARVVFLPV 189 (305)
T ss_dssp HHHHHHHHTTCSSEEEEEEEE-TTEEEEEEEHHHHHHHHHHHHHTTCEEEECSC
T ss_pred HHHHHHHHhhcCCeEEEEEec-CCcEEEEcCHHHHHHHHHHHHhCCceEEECCC
Confidence 456788887777776666774 467778887 5668899999999987776654
No 83
>1gh8_A Translation elongation factor 1BETA; alpha-beta sandwich, gene regulation, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.58.12.1
Probab=31.43 E-value=32 Score=20.84 Aligned_cols=23 Identities=13% Similarity=0.276 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHccCCccEEEEe
Q 035968 14 LKCRQKVMKLIAKLEGITSIVID 36 (112)
Q Consensus 14 ~~C~~kI~k~L~~~~GV~~v~vd 36 (112)
.+-...++.++++++||+++++.
T Consensus 61 ~~~td~lee~i~~~e~Vqsvdv~ 83 (89)
T 1gh8_A 61 EGGTEAAEESLSGIEGVSNIEVT 83 (89)
T ss_dssp CGGGGHHHHHHTTSCSSEEEEEE
T ss_pred CcChHHHHHHHhccCCccEEEEE
Confidence 46677899999999999999874
No 84
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=31.03 E-value=96 Score=19.20 Aligned_cols=52 Identities=19% Similarity=0.247 Sum_probs=34.3
Q ss_pred EEEeecccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEeeCCHHHHHHHHHhcCC-ce
Q 035968 5 TIVSVKLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGDADPVKIIKKVREFRK-SA 64 (112)
Q Consensus 5 ~~~~vgm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~k~G~-~~ 64 (112)
+.+--.-.|+.|.+ .++.|. ..||.--.+|+... ..+.++|...+...|. .+
T Consensus 7 i~iY~~p~C~~c~k-a~~~L~-~~gi~~~~~di~~~------~~~~~eL~~~l~~~g~~~~ 59 (121)
T 3rdw_A 7 VTIYHNPRCSKSRE-TLALVE-QQGITPQVVLYLET------PPSVDKLKELLQQLGFSDA 59 (121)
T ss_dssp CEEECCTTCHHHHH-HHHHHH-TTTCCCEEECTTTS------CCCHHHHHHHHHHTTCSSG
T ss_pred EEEEECCCCHHHHH-HHHHHH-HcCCCcEEEeeccC------CCcHHHHHHHHHhcCCcCH
Confidence 33444668999984 444554 36776545554432 3678899999999997 54
No 85
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=30.03 E-value=94 Score=18.76 Aligned_cols=42 Identities=19% Similarity=0.252 Sum_probs=28.6
Q ss_pred HHHHHHccCCccEEEEecCCCEEEEEeeCCHHHHHHHHHhcCC
Q 035968 20 VMKLIAKLEGITSIVIDPSKNTVTVIGDADPVKIIKKVREFRK 62 (112)
Q Consensus 20 I~k~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~k~G~ 62 (112)
.-+.|.+.-|+.+++++-.+++|+|.+ .+.+.+.++...+-.
T Consensus 36 ~Ik~I~e~tGv~~IdI~eddG~V~I~g-~~~ea~~~A~~~I~~ 77 (91)
T 2cpq_A 36 NIQQARKVPGVTAIELDEDTGTFRIYG-ESADAVKKARGFLEF 77 (91)
T ss_dssp HHHHHHTSTTEEEEEEETTTTEEEEEE-SSHHHHHHHHHHHSC
T ss_pred HHHHHHHHhCCeEEEEEcCCCEEEEEE-CCHHHHHHHHHHHHh
Confidence 334556667887688876679999988 456666666665443
No 86
>1kaf_A Transcription regulatory protein MOTA; escherichia coli, X-RAY crystallography, protein-DNA interactions, structural genomics; 1.60A {Enterobacteria phage T4} SCOP: d.199.1.1
Probab=29.06 E-value=1.1e+02 Score=19.25 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=29.0
Q ss_pred cCCccEEEEecCCCEEEEEeeCCHHHHHHHHHhcCCceEE
Q 035968 27 LEGITSIVIDPSKNTVTVIGDADPVKIIKKVREFRKSAAI 66 (112)
Q Consensus 27 ~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~k~G~~~~~ 66 (112)
..|+...++ ..++.++|-|---.+++++.+..+|..+..
T Consensus 43 t~GiRqfEi-~n~G~fRI~gYk~se~~~~~f~slGm~~K~ 81 (108)
T 1kaf_A 43 TNGIRNFEI-NNNGNMRIFGYKMMEHHIQKFTDIGMSCKI 81 (108)
T ss_dssp ETTEEEEEE-CTTSEEEEEEESCCHHHHHHHHTTTCEEEE
T ss_pred cCceeEEEE-ecCCcEEEEEecCCHHHHHHHHhcCceEEE
Confidence 467777766 467778877765567889999999976654
No 87
>3ady_A DOTD; 3-layer(BAB) sandwich, MTH1598-like, proton transport; 2.00A {Legionella pneumophila}
Probab=28.59 E-value=76 Score=21.08 Aligned_cols=36 Identities=6% Similarity=-0.022 Sum_probs=28.2
Q ss_pred CCCEEEEEeeCCHHHHHHHHH-hcCCceEEecCCCCc
Q 035968 38 SKNTVTVIGDADPVKIIKKVR-EFRKSAAIESIGPPK 73 (112)
Q Consensus 38 ~~~~v~V~~~~~~~~i~~~i~-k~G~~~~~~~~~~~~ 73 (112)
.+.++++...-++++++..|. ..||+....+..++.
T Consensus 64 ~~~~vs~dW~Gp~eelL~~LA~~~Gy~f~v~G~rpal 100 (148)
T 3ady_A 64 LQARASVDWSGPIEELTARIAKAAHFRFRVLGKSPSV 100 (148)
T ss_dssp GGCEEEEEEEEEHHHHHHHHHHHTTCEEEEESCCCSS
T ss_pred cccEEEEEeeCCHHHHHHHHHHHcCceEEeccCCCCC
Confidence 457788887778999999999 689988887765543
No 88
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.73 E-value=92 Score=20.83 Aligned_cols=31 Identities=19% Similarity=0.296 Sum_probs=25.4
Q ss_pred CccEEEEecCCCEEEEEeeCCHHHHHHHHHhc
Q 035968 29 GITSIVIDPSKNTVTVIGDADPVKIIKKVREF 60 (112)
Q Consensus 29 GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~k~ 60 (112)
|.. ..+|..++++.|.|.+++..|...|.+.
T Consensus 69 Gt~-g~id~~~~rlii~G~~~~~~i~~~L~~y 99 (157)
T 2e9h_A 69 GAQ-TQFDVKNDRYIVNGSHEANKLQDMLDGF 99 (157)
T ss_dssp TCC-EEEETTTTEEEEEBCCCHHHHHHHHHHH
T ss_pred CCc-eeecCCCCEEEEEeeeCHHHHHHHHHHH
Confidence 443 4577789999999999999999988864
No 89
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=27.45 E-value=40 Score=22.04 Aligned_cols=30 Identities=17% Similarity=0.384 Sum_probs=24.1
Q ss_pred CEEEEEeeCCHHHHHHHHHhc-CCceEEecC
Q 035968 40 NTVTVIGDADPVKIIKKVREF-RKSAAIESI 69 (112)
Q Consensus 40 ~~v~V~~~~~~~~i~~~i~k~-G~~~~~~~~ 69 (112)
.-+.|+||.|...++++|++. |+++..++.
T Consensus 111 ~~vLvSgD~DF~plv~~lr~~~G~~V~v~g~ 141 (165)
T 2qip_A 111 RVILVSGDGDFSLLVERIQQRYNKKVTVYGV 141 (165)
T ss_dssp EEEEECCCGGGHHHHHHHHHHHCCEEEEEEC
T ss_pred EEEEEECChhHHHHHHHHHHHcCcEEEEEeC
Confidence 334467888889999999995 999988875
No 90
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=26.72 E-value=1.1e+02 Score=26.07 Aligned_cols=44 Identities=7% Similarity=0.161 Sum_probs=33.4
Q ss_pred HHHHHHHHHccCCccEEEEecCCCEEEEEe--------eCCHHHHHHHHHhc
Q 035968 17 RQKVMKLIAKLEGITSIVIDPSKNTVTVIG--------DADPVKIIKKVREF 60 (112)
Q Consensus 17 ~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~--------~~~~~~i~~~i~k~ 60 (112)
...|++.|++++||.++.++-....+.|.- .++.++|..+|+..
T Consensus 159 ~~~i~~~L~~i~gv~~v~~~g~~~~i~i~id~~kl~~~Gls~~~v~~~l~~~ 210 (1052)
T 2v50_A 159 VSNIQDPLSRTKGVGDFQVFGSQYSMRIWLDPAKLNSYQLTPGDVSSAIQAQ 210 (1052)
T ss_dssp HHHTHHHHHTSTTEEEEEESSCCEEEEEEECHHHHTTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCceEEEecCCcEEEEEEeCHHHHHHcCCCHHHHHHHHHhc
Confidence 357999999999999999874444455542 26888999999854
No 91
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=25.26 E-value=86 Score=16.75 Aligned_cols=34 Identities=12% Similarity=0.243 Sum_probs=18.3
Q ss_pred EEEeecccChhHHHH---HHHHHHccC-CccEEEEecC
Q 035968 5 TIVSVKLLCLKCRQK---VMKLIAKLE-GITSIVIDPS 38 (112)
Q Consensus 5 ~~~~vgm~C~~C~~k---I~k~L~~~~-GV~~v~vd~~ 38 (112)
+++--.-.|+.|... +++...+.+ ++.-+.+|..
T Consensus 6 vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~ 43 (85)
T 1fo5_A 6 IELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVM 43 (85)
T ss_dssp EEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESS
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHHcCCceEEEEEECC
Confidence 333346789999643 333334444 4555556543
No 92
>2kgs_A Uncharacterized protein RV0899/MT0922; outer membrane protein A, BON DO cell membrane, membrane, transmembrane, membrane protein; NMR {Mycobacterium tuberculosis} PDB: 2ksm_A
Probab=24.54 E-value=38 Score=21.63 Aligned_cols=17 Identities=29% Similarity=0.460 Sum_probs=10.3
Q ss_pred EEEEecCCCEEEEEeeC
Q 035968 32 SIVIDPSKNTVTVIGDA 48 (112)
Q Consensus 32 ~v~vd~~~~~v~V~~~~ 48 (112)
.+++....+.|+++|.+
T Consensus 78 ~i~V~V~~g~VtLsG~v 94 (132)
T 2kgs_A 78 DFGLKVERDTVTLTGTA 94 (132)
T ss_dssp TCEEEEEETEEEEECEE
T ss_pred ceEEEEECCEEEEEEEE
Confidence 44455566777777653
No 93
>3tzy_A Polyketide synthase PKS13; acyltransferase, long fatty acid chain transferase, acyl CAR protein, transferase; HET: PLM; 2.20A {Mycobacterium tuberculosis} PDB: 3tzw_A 3tzx_A* 3tzz_A*
Probab=24.05 E-value=1.7e+02 Score=22.73 Aligned_cols=53 Identities=9% Similarity=0.096 Sum_probs=40.4
Q ss_pred HHHHHHHHHccCCccEEEEecCCCEEEEEee-CCHHHHHHHHHhcCCceEEecCC
Q 035968 17 RQKVMKLIAKLEGITSIVIDPSKNTVTVIGD-ADPVKIIKKVREFRKSAAIESIG 70 (112)
Q Consensus 17 ~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~-~~~~~i~~~i~k~G~~~~~~~~~ 70 (112)
...+...+...++|.-+.+|-. +.++|.|+ ...+.+.+.++..|..+..+.+.
T Consensus 281 ~~~v~~~~~~~~~v~iA~~NsP-~~~ViSG~~~ai~~~~~~l~~~g~~~~~L~V~ 334 (491)
T 3tzy_A 281 ADEIREVFSDFPDLEVCVYAAP-TQTVIGGPPEQVDAILARAEAEGKFARKFATK 334 (491)
T ss_dssp HHHHHHHGGGCTTCEEEEEEET-TEEEEEECHHHHHHHHHHHHHHTCCEEEESCS
T ss_pred HHHHHhhhcccccceeeeecCC-CcEEeCCcHHHHHHHHHHHHhcCceEEecccc
Confidence 4566777777788887778844 67788887 46688999999999988877653
No 94
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=24.04 E-value=86 Score=21.28 Aligned_cols=24 Identities=8% Similarity=0.158 Sum_probs=19.6
Q ss_pred cCCCEEEEEeeCCHHHHHHHHHhc
Q 035968 37 PSKNTVTVIGDADPVKIIKKVREF 60 (112)
Q Consensus 37 ~~~~~v~V~~~~~~~~i~~~i~k~ 60 (112)
|.+|+++|+|.-+.+++.+++..+
T Consensus 147 F~SGkivitGak~~~~~~~a~~~i 170 (180)
T 1ytb_A 147 FVSGKIVLTGAKQREEIYQAFEAI 170 (180)
T ss_dssp CTTSEEEEEEESSHHHHHHHHHHH
T ss_pred ecCCeEEEEecCCHHHHHHHHHHH
Confidence 789999999987778877777653
No 95
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=23.10 E-value=1.4e+02 Score=25.23 Aligned_cols=43 Identities=14% Similarity=0.318 Sum_probs=0.0
Q ss_pred HHHHHHHHHccCCccEEEEecCCCEEEEEee--------CCHHHHHHHHHh
Q 035968 17 RQKVMKLIAKLEGITSIVIDPSKNTVTVIGD--------ADPVKIIKKVRE 59 (112)
Q Consensus 17 ~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~--------~~~~~i~~~i~k 59 (112)
...|++.|++++||.+|.+.-....+.|.-+ +++++|..+|+.
T Consensus 159 ~~~i~~~l~~i~gv~~v~~~g~~~~i~i~~d~~~l~~~glt~~~v~~~l~~ 209 (1057)
T 4dx5_A 159 AANMKDAISRTSGVGDVQLFGSQYAMRIWMNPNELNKFQLTPVDVITAIKA 209 (1057)
T ss_dssp HHHTHHHHHTSTTEEEEEESSCCEEEEEEECHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCceEEEecCCcEEEEEEeCHHHHHHcCCCHHHHHHHHHH
No 96
>1f60_B Elongation factor EEF1BA; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: d.58.12.1 PDB: 1g7c_B* 2b7c_B 2b7b_B 1ije_B* 1ijf_B*
Probab=22.48 E-value=70 Score=19.52 Aligned_cols=23 Identities=17% Similarity=0.091 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHccCC-ccEEEEe
Q 035968 14 LKCRQKVMKLIAKLEG-ITSIVID 36 (112)
Q Consensus 14 ~~C~~kI~k~L~~~~G-V~~v~vd 36 (112)
.+-...++..+.+++| |+++++-
T Consensus 66 ~~~tD~lee~i~~~ed~VqSvdI~ 89 (94)
T 1f60_B 66 KVSLDDLQQSIEEDEDHVQSTDIA 89 (94)
T ss_dssp TCCHHHHHHHHHTCTTTEEEEEEE
T ss_pred ccChHHHHHHHHhccCceeEEEEE
Confidence 4667889999999999 9998874
No 97
>2y9j_Y Lipoprotein PRGK, protein PRGK; protein transport, type III secretion, IR1, inner membrane R C24-fold; 6.40A {Salmonella enterica subsp}
Probab=21.85 E-value=66 Score=21.59 Aligned_cols=19 Identities=21% Similarity=0.440 Sum_probs=15.9
Q ss_pred HHHHHHHHccCCccEEEEe
Q 035968 18 QKVMKLIAKLEGITSIVID 36 (112)
Q Consensus 18 ~kI~k~L~~~~GV~~v~vd 36 (112)
..+.+.|..++||.+++|.
T Consensus 91 ~ELartI~~i~gV~~ArVh 109 (170)
T 2y9j_Y 91 QRLEQSLQTMEGVLSARVH 109 (170)
T ss_dssp HHHHHHHTTSTTEEEEEEE
T ss_pred HHHHHHHHcCCCeeEEEEE
Confidence 4577889999999998876
No 98
>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}
Probab=21.82 E-value=53 Score=21.70 Aligned_cols=21 Identities=14% Similarity=0.204 Sum_probs=13.5
Q ss_pred eEEEeecccChhHHHHHHHHHH
Q 035968 4 KTIVSVKLLCLKCRQKVMKLIA 25 (112)
Q Consensus 4 ~~~~~vgm~C~~C~~kI~k~L~ 25 (112)
++.+-.+..|+.|. ..+..+.
T Consensus 9 ~I~~f~D~~CP~C~-~~~~~~~ 29 (216)
T 2in3_A 9 VLWYIADPMCSWCW-GFAPVIE 29 (216)
T ss_dssp EEEEEECTTCHHHH-HHHHHHH
T ss_pred eEEEEECCCCchhh-cchHHHH
Confidence 34555599999999 4444333
No 99
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=21.68 E-value=1.5e+02 Score=18.24 Aligned_cols=48 Identities=8% Similarity=0.008 Sum_probs=32.3
Q ss_pred ecccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEeeCCHHHHHHHHHhcCCce
Q 035968 9 VKLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGDADPVKIIKKVREFRKSA 64 (112)
Q Consensus 9 vgm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~k~G~~~ 64 (112)
..-.|+.|.+. ++.|. ..||.--.+|.... ..+.++|...+.+.|..+
T Consensus 10 ~~p~C~~c~ka-~~~L~-~~gi~~~~~di~~~------~~~~~eL~~~l~~~g~~~ 57 (120)
T 3gkx_A 10 QYPACSTCQKA-KKWLI-ENNIEYTNRLIVDD------NPTVEELKAWIPLSGLPV 57 (120)
T ss_dssp ECTTCHHHHHH-HHHHH-HTTCCCEEEETTTT------CCCHHHHHHHHHHHTSCG
T ss_pred ECCCChHHHHH-HHHHH-HcCCceEEEecccC------cCCHHHHHHHHHHcCCCH
Confidence 36679999854 44454 36776555655432 367889999999998654
No 100
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=21.50 E-value=1.5e+02 Score=18.22 Aligned_cols=28 Identities=4% Similarity=0.010 Sum_probs=23.7
Q ss_pred cCCCEEEEEeeC---CHHHHHHHHHhcCCce
Q 035968 37 PSKNTVTVIGDA---DPVKIIKKVREFRKSA 64 (112)
Q Consensus 37 ~~~~~v~V~~~~---~~~~i~~~i~k~G~~~ 64 (112)
+...++.++|.+ +.+++.+.|...|..+
T Consensus 33 l~G~~~v~TG~l~~~~R~e~~~~i~~~Gg~v 63 (109)
T 2k6g_A 33 LEGLIFVITGVLESIERDEAKSLIERYGGKV 63 (109)
T ss_dssp TTTCEEEEESBCSSCCHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEeeeCCCCCHHHHHHHHHHcCCEe
Confidence 678888999874 7899999999999765
No 101
>3vow_A Probable DNA DC->DU-editing enzyme apobec-3C; antiviral deffense, HOST-virus interaction, metal- HIV-1 VIF, BET, single domain, sivagm, hydrolase; 2.15A {Homo sapiens} PDB: 3vm8_A
Probab=21.49 E-value=54 Score=22.71 Aligned_cols=54 Identities=11% Similarity=0.134 Sum_probs=34.5
Q ss_pred ccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEeeCC--HHHHHHHHHhcCCceEEecC
Q 035968 11 LLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGDAD--PVKIIKKVREFRKSAAIESI 69 (112)
Q Consensus 11 m~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~~~--~~~i~~~i~k~G~~~~~~~~ 69 (112)
--|..|+.+|-+-|.+-+.|. ..|-. . .+-.--+ -.+=+..|.++|-.+.+...
T Consensus 95 SPC~~CA~~va~FL~~~~~v~-L~If~--a--RLY~~~~~~~q~gLr~L~~~G~~v~iM~~ 150 (190)
T 3vow_A 95 SPCPDCAGEVAEFLARHSNVN-LTIFT--A--RLYYFQYPCYQEGLRSLSQEGVAVEIMDY 150 (190)
T ss_dssp CCCHHHHHHHHHHHHHCTTEE-EEEEE--E--ECTTTTSHHHHHHHHHHHHHTCEEEECCH
T ss_pred CchHHHHHHHHHHHHhCCCeE-EEEEE--E--ecccccCchHHHHHHHHHHCCCcEEEeCh
Confidence 459999999999999888764 22210 0 1111112 24557778888988888654
No 102
>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors, drug design, cytoplasm, hydrolase, iron, manganese, metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens} SCOP: d.159.1.3 PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A* 3h68_A* 3h69_A* 1s95_A
Probab=21.39 E-value=2.1e+02 Score=21.04 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=33.4
Q ss_pred HHHHHHHHccCCccEEEEecCCCEEEEEeeC--CHHHHHHHHHhcCCc
Q 035968 18 QKVMKLIAKLEGITSIVIDPSKNTVTVIGDA--DPVKIIKKVREFRKS 63 (112)
Q Consensus 18 ~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~~--~~~~i~~~i~k~G~~ 63 (112)
.++++.|.+.+.+..+++ ....++.|.||+ ...+|.+.++..|+.
T Consensus 39 ~~~~~il~~ep~l~~l~~-p~~~ri~viGDIHG~~~~L~~ll~~~g~~ 85 (315)
T 3h63_A 39 VQVKEVLSKLSTLVETTL-KETEKITVCGDTHGQFYDLLNIFELNGLP 85 (315)
T ss_dssp HHHHHHHHTSCSEEEECC-CTTCEEEEECCCTTCHHHHHHHHHHHCCC
T ss_pred HHHHHHHHhCCCeEEEec-CCCceEEEEecCCCCHHHHHHHHHHhCCC
Confidence 456677888888865544 356789999984 778888888888864
No 103
>1yj7_A ESCJ; mixed alpha/beta, extended linker, protein transport; 1.80A {Escherichia coli}
Probab=21.33 E-value=68 Score=21.55 Aligned_cols=21 Identities=19% Similarity=0.471 Sum_probs=17.2
Q ss_pred HHHHHHHHHccCCccEEEEec
Q 035968 17 RQKVMKLIAKLEGITSIVIDP 37 (112)
Q Consensus 17 ~~kI~k~L~~~~GV~~v~vd~ 37 (112)
...+.+.|..++||.+++|.+
T Consensus 92 egELartI~~i~~V~~ARVhl 112 (171)
T 1yj7_A 92 EQDIERLLSKIPGVIDCSVSL 112 (171)
T ss_dssp HHHHHHHHTTSTTEEEEEEEE
T ss_pred HHHHHHHHHcCCCeeEEEEEE
Confidence 445788899999999998864
No 104
>3fpn_B Geobacillus stearothermophilus UVRB interaction domain; UVRA, nucleotide excision repair, DNA repair, DNA binding protein; 1.80A {Geobacillus stearothermophilus}
Probab=20.78 E-value=77 Score=19.39 Aligned_cols=27 Identities=7% Similarity=0.194 Sum_probs=19.5
Q ss_pred cCCCEEEEE-ee-CCHHHHHHHHHhcCCc
Q 035968 37 PSKNTVTVI-GD-ADPVKIIKKVREFRKS 63 (112)
Q Consensus 37 ~~~~~v~V~-~~-~~~~~i~~~i~k~G~~ 63 (112)
+....+.+. |. ++.++|.+.|...||.
T Consensus 10 ~~~~~l~l~~G~~i~~~~l~~~L~~~GY~ 38 (106)
T 3fpn_B 10 YRELVVSLRVGMEIERNALLRRLVDIQYD 38 (106)
T ss_dssp ---CCEEEETTCBCCHHHHHHHHHHTTCE
T ss_pred HhhCCeEEECCCCcCHHHHHHHHHHcCCE
Confidence 345556665 44 8999999999999994
No 105
>1b64_A Elongation factor 1-beta; guanine nucleotide exchange factor, G-protein, translation elongation; NMR {Homo sapiens} SCOP: d.58.12.1
Probab=20.68 E-value=72 Score=19.31 Aligned_cols=24 Identities=13% Similarity=0.152 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHccCC-ccEEEEec
Q 035968 14 LKCRQKVMKLIAKLEG-ITSIVIDP 37 (112)
Q Consensus 14 ~~C~~kI~k~L~~~~G-V~~v~vd~ 37 (112)
.+-...++..+.+++| |+++++-.
T Consensus 63 ~v~tD~lee~i~~~ed~VqSvdI~~ 87 (91)
T 1b64_A 63 KVGTDMLEEQITAFEDYVQSMDVAA 87 (91)
T ss_dssp SSCHHHHHHHHTTCTTTEEEEEESC
T ss_pred ccChHHHHHHHHhccCceeEEEEEE
Confidence 4667889999999999 99998753
No 106
>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*
Probab=20.51 E-value=1.5e+02 Score=17.80 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=17.1
Q ss_pred EEEeecccChhHHHHHHHHHHccC
Q 035968 5 TIVSVKLLCLKCRQKVMKLIAKLE 28 (112)
Q Consensus 5 ~~~~vgm~C~~C~~kI~k~L~~~~ 28 (112)
+++-..-.|+.|...+++.|.+..
T Consensus 27 Vvvf~~~~Cp~C~~alk~~L~~~~ 50 (118)
T 3c1r_A 27 IFVASKTYCPYCHAALNTLFEKLK 50 (118)
T ss_dssp EEEEECSSCHHHHHHHHHHHTTSC
T ss_pred EEEEEcCCCcCHHHHHHHHHHHcC
Confidence 444446789999976588887653
No 107
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=20.44 E-value=1.1e+02 Score=21.06 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=17.7
Q ss_pred cCCCEEEEEeeCCHHH-------HHHHHHhcCC
Q 035968 37 PSKNTVTVIGDADPVK-------IIKKVREFRK 62 (112)
Q Consensus 37 ~~~~~v~V~~~~~~~~-------i~~~i~k~G~ 62 (112)
|.+|+++++|.-+.++ |...|++.|+
T Consensus 155 F~SGKiviTGaks~~~~~~A~~~i~~~L~~~~~ 187 (198)
T 1mp9_A 155 FSSGKMVITGAKREDEVHKAVKKIFDKLVELDC 187 (198)
T ss_dssp CTTSEEEEEEESSHHHHHHHHHHHHHHHHHTTC
T ss_pred eCCCEEEEEecCCHHHHHHHHHHHHHHHHHhCC
Confidence 7899999999755544 4445555554
No 108
>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}
Probab=20.40 E-value=1.4e+02 Score=18.38 Aligned_cols=47 Identities=17% Similarity=0.256 Sum_probs=31.2
Q ss_pred ecccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEeeCCHHHHHHHHHhcCCc
Q 035968 9 VKLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGDADPVKIIKKVREFRKS 63 (112)
Q Consensus 9 vgm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~k~G~~ 63 (112)
-.-.|..|.+ .++.|.+ .||.--.+|.. ....+.++|...+++.|..
T Consensus 10 ~~p~C~~c~k-a~~~L~~-~gi~~~~~di~------~~~~t~~eL~~~l~~~g~~ 56 (119)
T 3f0i_A 10 HNPKCSKSRE-TLALLEN-QGIAPQVIKYL------ETSPSVEELKRLYQQLGLN 56 (119)
T ss_dssp CCTTCHHHHH-HHHHHHH-TTCCCEEECHH------HHCCCHHHHHHHHHHHTCS
T ss_pred ECCCChHHHH-HHHHHHH-cCCceEEEEec------cCcCcHHHHHHHHHHcCCc
Confidence 3567999984 4455554 57754334432 1236789999999999976
Done!