BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035970
(377 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96PU5|NED4L_HUMAN E3 ubiquitin-protein ligase NEDD4-like OS=Homo sapiens GN=NEDD4L
PE=1 SV=2
Length = 975
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 62/140 (44%), Gaps = 16/140 (11%)
Query: 6 RVLEISIVSGHDLAL-----VSKSMKTYSVAWVDPERKLT---TRVDQNGLNNPSWNEKF 57
R+L + +VSG DLA S S+ D R+L T+ + LN P WNE+F
Sbjct: 20 RILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLN-PKWNEEF 78
Query: 58 VFRVDDRFLTDETSAIMIEIYAAAWL-KDALIGSVRVLISHL-FGTLTHNSSSSTRYVAL 115
FRV+ ++ E++ L +D +G V V +SHL T + + L
Sbjct: 79 YFRVN-----PSNHRLLFEVFDENRLTRDDFLGQVDVPLSHLPTEDPTMERPYTFKDFLL 133
Query: 116 QVRRPSGRPQGILNLGITLL 135
+ R R +G L L + +
Sbjct: 134 RPRSHKSRVKGFLRLKMAYM 153
>sp|Q8CFI0|NED4L_MOUSE E3 ubiquitin-protein ligase NEDD4-like OS=Mus musculus GN=Nedd4l
PE=1 SV=2
Length = 1004
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 62/140 (44%), Gaps = 16/140 (11%)
Query: 6 RVLEISIVSGHDLAL-----VSKSMKTYSVAWVDPERKLT---TRVDQNGLNNPSWNEKF 57
R+L + +VSG DLA S S+ D R+L T+ + LN P WNE+F
Sbjct: 48 RILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLN-PKWNEEF 106
Query: 58 VFRVDDRFLTDETSAIMIEIYAAAWL-KDALIGSVRVLISHL-FGTLTHNSSSSTRYVAL 115
FRV+ ++ E++ L +D +G V V +SHL T + + L
Sbjct: 107 YFRVN-----PSNHRLLFEVFDENRLTRDDFLGQVDVPLSHLPTEDPTMERPYTFKDFLL 161
Query: 116 QVRRPSGRPQGILNLGITLL 135
+ R R +G L L + +
Sbjct: 162 RPRSHKSRVKGFLRLKMAYM 181
>sp|Q5RBF2|NED4L_PONAB E3 ubiquitin-protein ligase NEDD4-like OS=Pongo abelii GN=NEDD4L
PE=2 SV=1
Length = 959
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 62/140 (44%), Gaps = 16/140 (11%)
Query: 6 RVLEISIVSGHDLAL-----VSKSMKTYSVAWVDPERKLT---TRVDQNGLNNPSWNEKF 57
R+L + +VSG DLA S S+ D R+L T+ + LN P WNE+F
Sbjct: 24 RILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLN-PKWNEEF 82
Query: 58 VFRVDDRFLTDETSAIMIEIYAAAWL-KDALIGSVRVLISHL-FGTLTHNSSSSTRYVAL 115
FRV+ ++ E++ L +D +G V V +SHL T + + L
Sbjct: 83 YFRVN-----PSNHRLLFEVFDENRLTRDDFLGQVDVPLSHLPTEDPTMERPYTFKDFLL 137
Query: 116 QVRRPSGRPQGILNLGITLL 135
+ R R +G L L + +
Sbjct: 138 RPRSHKSRVKGFLRLKMAYM 157
>sp|Q58FX0|BAP2_ARATH BON1-associated protein 2 OS=Arabidopsis thaliana GN=BAP2 PE=1 SV=1
Length = 207
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 63/133 (47%), Gaps = 10/133 (7%)
Query: 6 RVLEISIVSGHDLALVSKSMK--TYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDD 63
R LEI ++S L + K +K TYSV +D E+ ++VD+ G + P W ++F +
Sbjct: 8 RSLEIEVISAEGLKVDRKPLKKKTYSVVRID-EKSWASKVDELGGSYPIWKDRFDMEMP- 65
Query: 64 RFLTDETSAIMIEIY--AAAWLKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPS 121
+ I IE+Y + +D +G ++ ++ G +++ ++R
Sbjct: 66 --INASVRFISIEVYYRTSGSGRDKNVGYAKIPVTDFMGGFA--PQGHLNFLSYRLRDEY 121
Query: 122 GRPQGILNLGITL 134
G GI+N+ I +
Sbjct: 122 GDKCGIVNVSIMV 134
>sp|P46935|NEDD4_MOUSE E3 ubiquitin-protein ligase NEDD4 OS=Mus musculus GN=Nedd4 PE=1
SV=3
Length = 887
Score = 38.5 bits (88), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 58/141 (41%), Gaps = 19/141 (13%)
Query: 6 RVLEISIVSGHDLA---LVSKSMKTYSVAWVDPERKLTTRVDQNGLN---NPSWNEKFVF 59
RV+ + +++G LA ++ S V DP + T V + NP WNE+ +F
Sbjct: 78 RVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILF 137
Query: 60 RVDDRFLTDETSAIMIEIYAAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRY----VA 114
RV + I+ E++ L +D +G V V L+ T N Y
Sbjct: 138 RV-----LPQRHRILFEVFDENRLTRDDFLGQVDV---PLYPLPTENPRMERPYTFKDFV 189
Query: 115 LQVRRPSGRPQGILNLGITLL 135
L R R +G L L +T L
Sbjct: 190 LHPRSHKSRVKGYLRLKMTYL 210
>sp|Q62940|NEDD4_RAT E3 ubiquitin-protein ligase NEDD4 OS=Rattus norvegicus GN=Nedd4
PE=1 SV=1
Length = 887
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 58/141 (41%), Gaps = 19/141 (13%)
Query: 6 RVLEISIVSGHDLA---LVSKSMKTYSVAWVDPERKLTTRVDQNGLN---NPSWNEKFVF 59
RV+ + +++G LA ++ S V DP + T V + NP WNE+ +F
Sbjct: 75 RVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGVLTSVQTKTIKKSLNPKWNEEILF 134
Query: 60 RVDDRFLTDETSAIMIEIYAAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRY----VA 114
RV + I+ E++ L +D +G V V L+ T N Y
Sbjct: 135 RV-----LPQQHRILFEVFDENRLTRDDFLGQVDV---PLYPLPTENPRMERPYTFKDFV 186
Query: 115 LQVRRPSGRPQGILNLGITLL 135
L R R +G L L +T L
Sbjct: 187 LHPRSHKSRVKGYLRLKMTYL 207
>sp|Q3ULW6|CCD33_MOUSE Coiled-coil domain-containing protein 33 OS=Mus musculus GN=Ccdc33
PE=2 SV=2
Length = 985
Score = 36.6 bits (83), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 16/103 (15%)
Query: 42 RVDQNGL----------NNPSWNEKFVFRVDDRFLT-DETSAIMIEIYAAAWLKD----A 86
R++QNG P WN+ F+F+ D + E +A+++E Y +A ++ A
Sbjct: 451 RINQNGYPQLSKPGGPPEQPLWNQSFLFQARDGATSFSENTALVLEYYPSASMQSSEPWA 510
Query: 87 LIGSVRVLISHLFGTLTHNSSSSTRYVALQVRR-PSGRPQGIL 128
L + V + L L H + LQV R P RP+ L
Sbjct: 511 LNQPLGVSVLPLKSRLYHKMLTGKHLQGLQVERLPIMRPENFL 553
>sp|Q9ZVT9|C2GR1_ARATH C2 and GRAM domain-containing protein At1g03370 OS=Arabidopsis
thaliana GN=At1g03370 PE=2 SV=4
Length = 1020
Score = 35.4 bits (80), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 41 TRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWLKDALIGSVRVLISHLF 99
T+V + LN P W E F F VDD L DE +++ + D +G VRV +S +F
Sbjct: 37 TKVVKKNLN-PKWTEDFSFGVDD--LNDELVVSVLD--EDKYFNDDFVGQVRVSVSLVF 90
>sp|Q941L2|BAP1_ARATH BON1-associated protein 1 OS=Arabidopsis thaliana GN=BAP1 PE=1 SV=1
Length = 192
Score = 35.4 bits (80), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 63/138 (45%), Gaps = 11/138 (7%)
Query: 6 RVLEISIVSGHDLALVSKSMK--TYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDD 63
+ LEI + S L L + +K T++V +D E+ + +D++ +NP+WN K +
Sbjct: 18 KTLEIDLRSAEGLKLNRRPIKKKTFAVVKID-EKCRKSNLDESRRSNPTWNYK-----SE 71
Query: 64 RFLTDETSAIMIEI-YAAAWLKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSG 122
+ I IE+ Y D IG ++ + G ++ +++ ++R G
Sbjct: 72 MPINGNEQFIFIEVFYRTGSGHDKKIGEAKIPTNDFMG--RYSPEGHLNFLSYRLRDEFG 129
Query: 123 RPQGILNLGITLLDNTMR 140
GI+NL I + + R
Sbjct: 130 DKCGIVNLSILVKSDPTR 147
>sp|A0JJX5|SYT4_ARATH Synaptotagmin-4 OS=Arabidopsis thaliana GN=SYT4 PE=2 SV=1
Length = 569
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 8 LEISIVSGHDLA---LVSKSMKTYSVAWVDP--ERKLTTRVDQNGLNNPSWNEKFVFRVD 62
L++ +V DLA ++ KS Y++ ++ P +R T+ N LN P WNE F F V+
Sbjct: 266 LDVKVVQAKDLANKDMIGKS-DPYAIVFIRPLPDRTKKTKTISNSLN-PIWNEHFEFIVE 323
Query: 63 D 63
D
Sbjct: 324 D 324
>sp|Q8K3R3|PLCD4_MOUSE 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-4
OS=Mus musculus GN=Plcd4 PE=1 SV=2
Length = 807
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 17/69 (24%)
Query: 6 RVLEISIVSGHDLALVSKSMKTYSVAWVDPERKL-------------TTRVDQNGLNNPS 52
++L + ++SG L V K+ +T VDP K+ T+ V+ NG+N P
Sbjct: 672 QILVVQVISGQQLPKVDKTKET---TVVDPLVKVELYGVPEDTKEQETSHVENNGIN-PY 727
Query: 53 WNEKFVFRV 61
W E F FR+
Sbjct: 728 WGETFYFRL 736
>sp|P24506|SY62_DIPOM Synaptotagmin-B OS=Diplobatis ommata GN=P65-B PE=1 SV=1
Length = 439
Score = 33.1 bits (74), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 34 DPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIY-AAAWLKDALIGSVR 92
D ++K T+V + LN P++NE FVF+V + L +T +M+ +Y + K IG V
Sbjct: 206 DKKKKYETKVQKKTLN-PTFNESFVFKVPYQELGGKT--LMMAVYDFDRFSKHDCIGQVT 262
Query: 93 VLISHL 98
VL++ +
Sbjct: 263 VLMTKV 268
>sp|Q8L706|SYT5_ARATH Synaptotagmin-5 OS=Arabidopsis thaliana GN=SYT5 PE=2 SV=1
Length = 560
Score = 32.0 bits (71), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Query: 4 PPRVLEISIVSGHDLA---LVSKSMKTYSVAWVDPERKLTTRVDQ-NGLNNPSWNEKFVF 59
P +LE+ +V +L LV KS ++ ++ P R+ T R N NP WNE F F
Sbjct: 260 PVGMLEVKLVQAKNLTNKDLVGKS-DPFAKMFIRPLREKTKRSKTINNDLNPIWNEHFEF 318
Query: 60 RVDDRFLTDETSAIMIEIY 78
V+D T +++ IY
Sbjct: 319 VVEDA----STQHLVVRIY 333
>sp|P50392|PA24A_DANRE Cytosolic phospholipase A2 OS=Danio rerio GN=pla2g4a PE=2 SV=1
Length = 741
Score = 31.6 bits (70), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 35 PERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWLKDALIGSVRVL 94
PE + TR N +N P WNE F F +D ++++ + + + A ++ D +G+ +
Sbjct: 48 PESRKRTRHINNDIN-PKWNETFEFILD----PNQSNVLEVTLMDANYVMDETLGTAKYS 102
Query: 95 ISHL 98
+S L
Sbjct: 103 LSKL 106
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.127 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 143,766,597
Number of Sequences: 539616
Number of extensions: 6006099
Number of successful extensions: 15787
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 68
Number of HSP's that attempted gapping in prelim test: 15647
Number of HSP's gapped (non-prelim): 171
length of query: 377
length of database: 191,569,459
effective HSP length: 119
effective length of query: 258
effective length of database: 127,355,155
effective search space: 32857629990
effective search space used: 32857629990
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)