Query 035970
Match_columns 377
No_of_seqs 223 out of 1383
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 08:06:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035970.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035970hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04016 C2_Tollip C2 domain pr 99.9 1.8E-20 3.9E-25 161.4 15.1 116 6-134 2-121 (121)
2 cd04051 C2_SRC2_like C2 domain 99.8 4.5E-20 9.8E-25 156.5 12.9 122 7-130 1-125 (125)
3 cd08681 C2_fungal_Inn1p-like C 99.8 2.3E-19 5E-24 150.5 13.1 116 6-134 1-118 (118)
4 cd04042 C2A_MCTP_PRT C2 domain 99.8 1.4E-18 3E-23 147.0 15.2 117 7-136 1-121 (121)
5 cd04019 C2C_MCTP_PRT_plant C2 99.8 1.4E-18 3E-23 154.4 14.6 124 7-138 1-135 (150)
6 cd08378 C2B_MCTP_PRT_plant C2 99.8 1.4E-18 3.1E-23 148.4 13.8 119 7-135 1-120 (121)
7 cd04022 C2A_MCTP_PRT_plant C2 99.8 1.9E-18 4.1E-23 147.6 14.4 121 7-136 1-127 (127)
8 cd08682 C2_Rab11-FIP_classI C2 99.8 3E-18 6.5E-23 146.1 13.7 118 8-132 1-125 (126)
9 cd08379 C2D_MCTP_PRT_plant C2 99.8 3.9E-18 8.5E-23 147.9 14.1 110 7-130 1-125 (126)
10 cd08400 C2_Ras_p21A1 C2 domain 99.8 9.1E-18 2E-22 144.0 15.6 119 5-137 3-125 (126)
11 cd08678 C2_C21orf25-like C2 do 99.8 1.3E-17 2.8E-22 142.4 15.7 118 8-138 1-123 (126)
12 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 1E-17 2.2E-22 143.3 14.9 122 7-135 1-133 (133)
13 cd04046 C2_Calpain C2 domain p 99.8 1.3E-17 2.9E-22 142.7 15.6 119 4-138 1-125 (126)
14 cd04015 C2_plant_PLD C2 domain 99.8 1.2E-17 2.5E-22 149.5 15.6 118 5-135 6-158 (158)
15 cd04044 C2A_Tricalbin-like C2 99.8 1.2E-17 2.7E-22 140.2 13.9 119 5-136 1-124 (124)
16 cd04036 C2_cPLA2 C2 domain pre 99.7 2.4E-17 5.2E-22 139.1 14.1 113 7-134 1-117 (119)
17 cd08401 C2A_RasA2_RasA3 C2 dom 99.7 3.9E-17 8.4E-22 139.6 15.2 114 8-134 2-121 (121)
18 cd08377 C2C_MCTP_PRT C2 domain 99.7 6.7E-17 1.5E-21 135.3 14.7 114 6-135 1-119 (119)
19 cd08391 C2A_C2C_Synaptotagmin_ 99.7 5.6E-17 1.2E-21 135.7 13.4 113 6-134 1-121 (121)
20 cd08375 C2_Intersectin C2 doma 99.7 1.1E-16 2.3E-21 139.9 15.4 121 3-134 12-135 (136)
21 KOG1030 Predicted Ca2+-depende 99.7 2.1E-17 4.5E-22 149.3 11.2 95 1-102 1-98 (168)
22 cd08373 C2A_Ferlin C2 domain f 99.7 1.4E-16 2.9E-21 135.9 15.4 117 12-139 2-120 (127)
23 cd08395 C2C_Munc13 C2 domain t 99.7 7.8E-17 1.7E-21 138.7 13.4 105 7-120 1-113 (120)
24 cd08394 C2A_Munc13 C2 domain f 99.7 6.6E-17 1.4E-21 140.8 13.0 101 5-119 1-101 (127)
25 cd08382 C2_Smurf-like C2 domai 99.7 1E-16 2.2E-21 136.7 13.9 112 8-132 2-122 (123)
26 cd04024 C2A_Synaptotagmin-like 99.7 1.3E-16 2.9E-21 134.9 13.9 119 6-134 1-128 (128)
27 cd08376 C2B_MCTP_PRT C2 domain 99.7 2.1E-16 4.5E-21 132.2 14.8 112 7-135 1-115 (116)
28 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 1.7E-16 3.6E-21 134.5 13.7 113 8-133 2-123 (123)
29 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 1.9E-16 4.1E-21 134.7 14.1 114 8-133 2-120 (121)
30 cd08677 C2A_Synaptotagmin-13 C 99.7 6.8E-17 1.5E-21 139.1 10.8 93 3-99 11-107 (118)
31 cd04010 C2B_RasA3 C2 domain se 99.7 1.2E-16 2.5E-21 142.2 12.3 107 7-120 1-123 (148)
32 cd04014 C2_PKC_epsilon C2 doma 99.7 5.3E-16 1.1E-20 133.3 15.5 115 5-136 3-130 (132)
33 cd08381 C2B_PI3K_class_II C2 d 99.7 1.4E-16 3E-21 136.3 10.9 103 5-117 12-121 (122)
34 cd04029 C2A_SLP-4_5 C2 domain 99.7 3.5E-16 7.7E-21 134.3 12.0 105 3-117 12-124 (125)
35 cd08392 C2A_SLP-3 C2 domain fi 99.7 3.7E-16 8.1E-21 135.2 11.8 107 4-117 13-127 (128)
36 cd04011 C2B_Ferlin C2 domain s 99.7 5.2E-16 1.1E-20 129.6 12.2 108 5-120 3-111 (111)
37 cd04050 C2B_Synaptotagmin-like 99.7 5.4E-16 1.2E-20 128.5 11.7 100 7-119 1-102 (105)
38 cd00275 C2_PLC_like C2 domain 99.7 1.8E-15 4E-20 127.7 14.8 115 6-134 2-127 (128)
39 cd04040 C2D_Tricalbin-like C2 99.7 1.2E-15 2.5E-20 127.3 13.3 111 8-130 1-114 (115)
40 cd04017 C2D_Ferlin C2 domain f 99.7 2.2E-15 4.8E-20 130.4 15.0 124 7-137 2-134 (135)
41 cd08387 C2A_Synaptotagmin-8 C2 99.7 8.9E-16 1.9E-20 130.2 12.2 106 3-118 13-123 (124)
42 cd04039 C2_PSD C2 domain prese 99.7 7.6E-16 1.7E-20 129.5 11.7 93 6-103 1-100 (108)
43 cd08393 C2A_SLP-1_2 C2 domain 99.7 6.2E-16 1.3E-20 132.5 10.6 104 4-117 13-124 (125)
44 cd04049 C2_putative_Elicitor-r 99.7 1.3E-15 2.8E-20 129.2 12.4 95 6-102 1-98 (124)
45 cd04027 C2B_Munc13 C2 domain s 99.7 2.3E-15 5E-20 129.0 14.1 110 7-132 2-127 (127)
46 cd04028 C2B_RIM1alpha C2 domai 99.7 1.5E-15 3.2E-20 135.1 13.0 103 5-120 28-139 (146)
47 cd04041 C2A_fungal C2 domain f 99.6 1.1E-15 2.3E-20 128.0 11.1 94 6-101 1-100 (111)
48 cd04030 C2C_KIAA1228 C2 domain 99.6 1.6E-15 3.4E-20 128.6 12.1 104 4-117 14-126 (127)
49 cd08385 C2A_Synaptotagmin-1-5- 99.6 1.6E-15 3.4E-20 128.5 11.9 105 4-118 14-123 (124)
50 cd04043 C2_Munc13_fungal C2 do 99.6 5.6E-15 1.2E-19 125.2 15.1 117 7-137 2-123 (126)
51 cd08680 C2_Kibra C2 domain fou 99.6 1.1E-15 2.4E-20 132.0 11.0 96 3-101 11-114 (124)
52 cd08690 C2_Freud-1 C2 domain f 99.6 4.5E-15 9.8E-20 133.3 15.1 124 7-138 3-140 (155)
53 cd08685 C2_RGS-like C2 domain 99.6 1E-15 2.2E-20 130.7 10.2 102 5-117 11-119 (119)
54 cd08688 C2_KIAA0528-like C2 do 99.6 1.6E-15 3.5E-20 126.8 11.0 104 8-119 1-109 (110)
55 cd08383 C2A_RasGAP C2 domain ( 99.6 5.2E-15 1.1E-19 123.3 13.7 113 8-134 2-117 (117)
56 cd08521 C2A_SLP C2 domain firs 99.6 2.6E-15 5.6E-20 126.4 11.3 105 3-117 11-123 (123)
57 cd04021 C2_E3_ubiquitin_ligase 99.6 1.3E-14 2.8E-19 124.3 15.6 118 6-132 2-124 (125)
58 cd08388 C2A_Synaptotagmin-4-11 99.6 7.9E-15 1.7E-19 126.5 13.1 107 4-118 14-127 (128)
59 cd04045 C2C_Tricalbin-like C2 99.6 9.7E-15 2.1E-19 124.6 13.0 102 6-121 1-105 (120)
60 cd04052 C2B_Tricalbin-like C2 99.6 5.8E-15 1.3E-19 123.8 10.9 102 22-137 10-111 (111)
61 cd04031 C2A_RIM1alpha C2 domai 99.6 6.7E-15 1.4E-19 124.2 11.2 103 4-117 14-124 (125)
62 cd08389 C2A_Synaptotagmin-14_1 99.6 6.6E-15 1.4E-19 126.2 11.3 105 3-118 13-123 (124)
63 cd08691 C2_NEDL1-like C2 domai 99.6 2.7E-14 5.9E-19 125.5 15.3 115 7-132 2-136 (137)
64 cd04018 C2C_Ferlin C2 domain t 99.6 1.4E-14 3E-19 129.4 13.6 109 7-120 1-126 (151)
65 cd08386 C2A_Synaptotagmin-7 C2 99.6 1.4E-14 3.1E-19 122.6 12.4 106 3-118 13-124 (125)
66 cd04009 C2B_Munc13-like C2 dom 99.6 1.2E-14 2.5E-19 125.6 10.9 97 4-101 14-119 (133)
67 PLN03008 Phospholipase D delta 99.6 2.4E-14 5.2E-19 155.0 15.6 102 24-138 76-180 (868)
68 cd04013 C2_SynGAP_like C2 doma 99.6 5.5E-14 1.2E-18 125.2 15.3 118 5-138 10-142 (146)
69 cd08390 C2A_Synaptotagmin-15-1 99.6 3E-14 6.5E-19 120.1 12.8 106 3-118 11-122 (123)
70 cd04032 C2_Perforin C2 domain 99.6 1.8E-14 3.9E-19 125.2 11.4 91 4-99 26-118 (127)
71 cd08676 C2A_Munc13-like C2 dom 99.6 2.5E-14 5.5E-19 128.0 11.9 90 2-99 24-143 (153)
72 cd04038 C2_ArfGAP C2 domain pr 99.6 7.3E-14 1.6E-18 123.8 14.8 90 6-102 2-93 (145)
73 cd08406 C2B_Synaptotagmin-12 C 99.6 1.5E-14 3.2E-19 126.8 10.0 92 3-97 12-110 (136)
74 cd08407 C2B_Synaptotagmin-13 C 99.6 1.9E-14 4E-19 126.7 9.8 92 3-97 12-112 (138)
75 cd08675 C2B_RasGAP C2 domain s 99.5 4.5E-14 9.7E-19 123.3 11.5 105 8-120 1-121 (137)
76 cd08404 C2B_Synaptotagmin-4 C2 99.5 1.3E-14 2.9E-19 125.4 7.5 110 4-125 13-129 (136)
77 cd08384 C2B_Rabphilin_Doc2 C2 99.5 6.3E-14 1.4E-18 120.2 10.5 92 3-97 10-108 (133)
78 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.5 7E-14 1.5E-18 125.7 11.0 95 4-101 25-127 (162)
79 cd08402 C2B_Synaptotagmin-1 C2 99.5 7.1E-14 1.5E-18 120.7 10.0 93 3-98 12-111 (136)
80 KOG0696 Serine/threonine prote 99.5 2.2E-15 4.7E-20 152.5 0.1 214 5-231 179-432 (683)
81 cd04035 C2A_Rabphilin_Doc2 C2 99.5 2.2E-13 4.7E-18 115.4 12.0 96 4-102 13-115 (123)
82 cd08410 C2B_Synaptotagmin-17 C 99.5 1.2E-13 2.5E-18 120.0 10.4 90 3-95 11-107 (135)
83 cd08408 C2B_Synaptotagmin-14_1 99.5 1.2E-13 2.5E-18 121.1 10.4 93 3-98 12-112 (138)
84 PLN03200 cellulose synthase-in 99.5 6.9E-14 1.5E-18 162.7 11.5 122 3-136 1977-2101(2102)
85 cd08409 C2B_Synaptotagmin-15 C 99.5 1.2E-13 2.6E-18 120.4 10.3 93 3-98 12-110 (137)
86 cd04037 C2E_Ferlin C2 domain f 99.5 2.2E-13 4.8E-18 116.6 11.3 89 7-100 1-93 (124)
87 cd08403 C2B_Synaptotagmin-3-5- 99.5 1.3E-13 2.7E-18 118.8 9.9 91 3-96 11-108 (134)
88 KOG1028 Ca2+-dependent phospho 99.5 2.6E-13 5.6E-18 139.1 13.6 126 4-139 165-298 (421)
89 cd08405 C2B_Synaptotagmin-7 C2 99.5 1.3E-13 2.9E-18 119.0 9.6 92 4-98 13-111 (136)
90 cd04026 C2_PKC_alpha_gamma C2 99.5 2.7E-13 5.9E-18 116.0 11.4 103 6-120 13-122 (131)
91 cd04048 C2A_Copine C2 domain f 99.5 3.5E-13 7.6E-18 114.0 11.6 96 11-118 5-113 (120)
92 cd00276 C2B_Synaptotagmin C2 d 99.5 2.7E-13 5.8E-18 115.3 10.4 91 4-97 12-109 (134)
93 cd08686 C2_ABR C2 domain in th 99.5 3.4E-13 7.4E-18 116.3 10.7 80 8-97 1-92 (118)
94 cd08692 C2B_Tac2-N C2 domain s 99.4 6.2E-13 1.3E-17 117.1 10.3 94 2-98 10-110 (135)
95 PF00168 C2: C2 domain; Inter 99.4 1.1E-12 2.5E-17 101.2 9.7 80 8-92 1-85 (85)
96 cd04047 C2B_Copine C2 domain s 99.4 1.1E-11 2.4E-16 102.8 12.3 90 10-101 4-101 (110)
97 PLN02223 phosphoinositide phos 99.3 9.2E-12 2E-16 130.2 13.9 105 5-124 408-524 (537)
98 PLN02952 phosphoinositide phos 99.3 1.9E-11 4E-16 129.8 14.1 115 5-134 469-596 (599)
99 KOG0169 Phosphoinositide-speci 99.3 1.6E-11 3.4E-16 131.3 12.0 117 6-136 616-745 (746)
100 PLN02270 phospholipase D alpha 99.3 4E-11 8.7E-16 130.0 14.4 122 5-138 7-151 (808)
101 smart00239 C2 Protein kinase C 99.2 1.1E-10 2.4E-15 91.3 11.4 91 7-102 1-96 (101)
102 PLN02230 phosphoinositide phos 99.2 6E-11 1.3E-15 125.9 12.3 115 5-134 468-597 (598)
103 PLN02222 phosphoinositide phos 99.2 1.5E-10 3.3E-15 122.6 14.8 115 5-134 451-580 (581)
104 PLN02228 Phosphoinositide phos 99.2 3.3E-10 7.2E-15 119.8 14.3 117 6-137 431-563 (567)
105 COG5038 Ca2+-dependent lipid-b 99.2 2.5E-10 5.4E-15 126.4 13.6 163 4-183 434-601 (1227)
106 KOG1011 Neurotransmitter relea 99.2 6.8E-11 1.5E-15 124.3 8.3 114 6-135 295-424 (1283)
107 cd00030 C2 C2 domain. The C2 d 99.1 4.6E-10 1E-14 86.7 10.5 87 8-99 1-90 (102)
108 cd08374 C2F_Ferlin C2 domain s 99.1 6.7E-10 1.4E-14 97.7 10.7 94 8-102 2-125 (133)
109 COG5038 Ca2+-dependent lipid-b 99.0 9.2E-10 2E-14 122.0 9.4 125 1-137 1035-1163(1227)
110 cd08689 C2_fungal_Pkc1p C2 dom 99.0 1.4E-09 3.1E-14 92.3 7.5 85 8-102 1-90 (109)
111 KOG2059 Ras GTPase-activating 99.0 1.9E-09 4.2E-14 114.5 9.2 122 4-138 3-128 (800)
112 KOG1264 Phospholipase C [Lipid 98.9 4.7E-09 1E-13 112.8 10.6 118 6-137 1065-1191(1267)
113 KOG1028 Ca2+-dependent phospho 98.9 5.8E-09 1.3E-13 107.2 9.8 92 3-97 295-393 (421)
114 KOG1328 Synaptic vesicle prote 98.8 4.4E-09 9.6E-14 112.0 3.9 96 4-100 945-1049(1103)
115 PLN02352 phospholipase D epsil 98.7 1.6E-07 3.5E-12 102.1 12.7 116 5-139 9-134 (758)
116 KOG1328 Synaptic vesicle prote 98.5 2.9E-08 6.3E-13 106.0 0.3 121 4-137 112-303 (1103)
117 KOG1031 Predicted Ca2+-depende 98.4 6.9E-07 1.5E-11 93.9 8.8 127 5-135 2-136 (1169)
118 KOG2059 Ras GTPase-activating 98.0 1.6E-05 3.5E-10 85.3 7.5 119 12-138 137-279 (800)
119 KOG0905 Phosphoinositide 3-kin 97.7 2.5E-05 5.3E-10 87.6 4.2 104 5-118 1523-1634(1639)
120 KOG1265 Phospholipase C [Lipid 97.7 0.00017 3.8E-09 79.1 9.2 102 6-126 703-812 (1189)
121 KOG1011 Neurotransmitter relea 97.3 0.00093 2E-08 71.7 9.3 106 6-120 1125-1238(1283)
122 KOG1013 Synaptic vesicle prote 97.3 0.00034 7.3E-09 70.0 5.2 86 5-93 232-324 (362)
123 KOG3837 Uncharacterized conser 97.3 0.00017 3.7E-09 73.9 3.2 125 6-138 367-506 (523)
124 cd08683 C2_C2cd3 C2 domain fou 97.2 0.00043 9.4E-09 61.2 5.0 94 8-102 1-134 (143)
125 KOG1326 Membrane-associated pr 97.2 0.00022 4.9E-09 79.1 3.0 86 7-97 614-703 (1105)
126 KOG1013 Synaptic vesicle prote 97.0 0.00012 2.6E-09 73.1 -0.7 129 5-138 92-232 (362)
127 cd08684 C2A_Tac2-N C2 domain f 97.0 0.00094 2E-08 55.7 4.2 89 9-101 2-95 (103)
128 PLN02964 phosphatidylserine de 97.0 0.0014 2.9E-08 71.2 6.4 86 5-101 53-140 (644)
129 KOG2060 Rab3 effector RIM1 and 96.7 0.0014 3E-08 66.5 4.0 109 1-121 264-381 (405)
130 PF10358 NT-C2: N-terminal C2 96.4 0.16 3.5E-06 43.8 14.7 125 6-138 7-138 (143)
131 cd08693 C2_PI3K_class_I_beta_d 95.8 0.065 1.4E-06 49.1 9.2 74 6-81 8-86 (173)
132 cd08398 C2_PI3K_class_I_alpha 95.6 0.089 1.9E-06 47.7 9.3 88 6-97 8-105 (158)
133 KOG0598 Ribosomal protein S6 k 95.6 0.0023 4.9E-08 64.8 -1.2 65 167-232 36-108 (357)
134 PF15627 CEP76-C2: CEP76 C2 do 95.0 0.45 9.8E-06 43.3 11.8 130 3-138 6-153 (156)
135 cd08380 C2_PI3K_like C2 domain 95.0 0.17 3.7E-06 44.9 9.0 90 6-97 8-106 (156)
136 cd08687 C2_PKN-like C2 domain 94.9 0.23 5E-06 41.7 8.8 86 23-134 7-92 (98)
137 KOG1326 Membrane-associated pr 94.6 0.011 2.4E-07 66.2 0.4 114 8-132 208-329 (1105)
138 PF12416 DUF3668: Cep120 prote 94.3 0.49 1.1E-05 48.0 11.4 123 8-138 2-135 (340)
139 PF11618 DUF3250: Protein of u 93.8 0.37 8.1E-06 41.1 8.0 102 28-136 2-106 (107)
140 KOG1452 Predicted Rho GTPase-a 92.8 0.2 4.4E-06 50.4 5.8 77 4-87 49-130 (442)
141 KOG1327 Copine [Signal transdu 92.0 0.32 6.9E-06 51.9 6.3 85 14-100 144-236 (529)
142 cd04012 C2A_PI3K_class_II C2 d 92.0 0.7 1.5E-05 42.0 7.8 91 6-97 8-118 (171)
143 PF14429 DOCK-C2: C2 domain in 91.6 0.86 1.9E-05 41.6 7.9 57 38-97 60-120 (184)
144 cd08399 C2_PI3K_class_I_gamma 91.1 4.1 8.8E-05 37.8 11.9 125 6-139 10-142 (178)
145 cd08397 C2_PI3K_class_III C2 d 91.0 0.86 1.9E-05 41.3 7.2 73 23-97 28-106 (159)
146 PF15625 CC2D2AN-C2: CC2D2A N- 89.7 1.5 3.3E-05 39.9 7.7 73 24-101 36-109 (168)
147 cd08695 C2_Dock-B C2 domains f 89.2 1.1 2.5E-05 41.9 6.6 58 37-97 53-113 (189)
148 cd08694 C2_Dock-A C2 domains f 88.1 1.6 3.5E-05 41.2 6.8 57 37-96 53-114 (196)
149 PF00792 PI3K_C2: Phosphoinosi 87.2 1.9 4.1E-05 37.8 6.4 58 40-98 23-85 (142)
150 cd08679 C2_DOCK180_related C2 84.8 3.5 7.7E-05 37.6 7.2 47 49-97 63-115 (178)
151 KOG0605 NDR and related serine 80.5 0.29 6.4E-06 52.1 -1.8 58 174-232 159-224 (550)
152 cd08696 C2_Dock-C C2 domains f 77.1 9.1 0.0002 35.6 7.0 57 38-97 55-118 (179)
153 smart00142 PI3K_C2 Phosphoinos 77.0 14 0.0003 30.6 7.5 72 8-81 13-91 (100)
154 PF14186 Aida_C2: Cytoskeletal 75.5 14 0.0003 33.5 7.6 95 5-101 12-115 (147)
155 cd08697 C2_Dock-D C2 domains f 70.8 18 0.00038 33.9 7.3 57 38-97 57-123 (185)
156 KOG1329 Phospholipase D1 [Lipi 61.1 11 0.00023 42.9 4.5 87 25-123 138-225 (887)
157 PF14924 DUF4497: Protein of u 50.9 56 0.0012 27.6 6.4 82 56-137 12-106 (112)
158 PF06547 DUF1117: Protein of u 45.1 6.9 0.00015 33.9 -0.1 9 346-354 74-82 (117)
159 PTZ00447 apical membrane antig 43.3 2.6E+02 0.0056 29.2 10.6 99 24-135 73-173 (508)
160 KOG3543 Ca2+-dependent activat 35.8 1.9E+02 0.0042 32.4 8.8 80 7-94 342-425 (1218)
161 KOG1327 Copine [Signal transdu 34.3 47 0.001 35.9 4.1 57 40-101 44-105 (529)
162 KOG2419 Phosphatidylserine dec 31.0 7.3 0.00016 42.9 -2.6 51 10-63 284-340 (975)
163 KOG4269 Rac GTPase-activating 29.0 27 0.00059 39.9 1.3 82 5-96 758-854 (1112)
164 KOG0694 Serine/threonine prote 27.5 38 0.00083 37.6 2.1 51 24-81 27-77 (694)
165 PF06449 DUF1082: Mitochondria 21.7 44 0.00094 24.9 0.8 11 346-356 10-20 (51)
No 1
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.85 E-value=1.8e-20 Score=161.38 Aligned_cols=116 Identities=22% Similarity=0.310 Sum_probs=96.5
Q ss_pred eEEEEEEEEeecCCCC-CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC-
Q 035970 6 RVLEISIVSGHDLALV-SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL- 83 (377)
Q Consensus 6 g~LeVtVISAkdL~~~-~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~- 83 (377)
+.|+|+|++|++|++. .+++||||+|+++. ++++|+|+.+++.||+|||+|.|.+.+. ...|.|+|||++.+
T Consensus 2 g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~-~~~kT~v~~~~~~nP~WNe~F~f~v~~~-----~~~l~~~V~d~d~~~ 75 (121)
T cd04016 2 GRLSITVVQAKLVKNYGLTRMDPYCRIRVGH-AVYETPTAYNGAKNPRWNKTIQCTLPEG-----VDSIYIEIFDERAFT 75 (121)
T ss_pred cEEEEEEEEccCCCcCCCCCCCceEEEEECC-EEEEeEEccCCCCCCccCeEEEEEecCC-----CcEEEEEEEeCCCCc
Confidence 6899999999999765 48999999999974 6789999877789999999999999753 36799999999976
Q ss_pred CCceeEEEEEEccc-ccCCcccCCCCCceeEEEEeeCCCC-CcceEEEEEEEE
Q 035970 84 KDALIGSVRVLISH-LFGTLTHNSSSSTRYVALQVRRPSG-RPQGILNLGITL 134 (377)
Q Consensus 84 ~DdlIG~a~IpLs~-L~~~~~~~~~~~~~~v~y~Lrr~sG-k~~G~L~LsV~f 134 (377)
.|++||.+.|+|.. +..+.. ...||+|....+ +..|.|+|+++|
T Consensus 76 ~dd~iG~~~i~l~~~~~~g~~-------~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 76 MDERIAWTHITIPESVFNGET-------LDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred CCceEEEEEEECchhccCCCC-------ccccEeCcCccCCCCceEEEEEEeC
Confidence 58999999999964 544321 357999987554 578999999975
No 2
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.83 E-value=4.5e-20 Score=156.50 Aligned_cols=122 Identities=44% Similarity=0.789 Sum_probs=101.5
Q ss_pred EEEEEEEEeecCCCC--CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCc-C
Q 035970 7 VLEISIVSGHDLALV--SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAW-L 83 (377)
Q Consensus 7 ~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~-~ 83 (377)
+|+|+|++|++|+.. .+.+||||+|++.+..+.+|+++.+++.||.|||+|.|.+....+......|.|+|||++. .
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 489999999999764 4789999999998757789998876689999999999999875322235789999999986 5
Q ss_pred CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcceEEEE
Q 035970 84 KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQGILNL 130 (377)
Q Consensus 84 ~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~G~L~L 130 (377)
.|++||++.|+|.++...... .......||+|++++|+++|+|+|
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~--~~~~~~~~~~l~~~~g~~~G~~~~ 125 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASP--AGELRFLSYQLRRPSGKPQGVLNF 125 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCC--CCcceeEEEEeECCCCCcCeEEeC
Confidence 789999999999999876531 113467899999999999999985
No 3
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.81 E-value=2.3e-19 Score=150.47 Aligned_cols=116 Identities=19% Similarity=0.299 Sum_probs=96.9
Q ss_pred eEEEEEEEEeecCCCC--CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC
Q 035970 6 RVLEISIVSGHDLALV--SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL 83 (377)
Q Consensus 6 g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~ 83 (377)
+.|+|+|++|++|++. .+.+||||++++++ .+.+|+++.+++.||.|||.|.|.+... ....|.|+|||++..
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~-~~~kT~~~~~~~~nP~Wne~f~f~v~~~----~~~~l~i~v~d~~~~ 75 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGG-VTKKTKTDFRGGQHPEWDEELRFEITED----KKPILKVAVFDDDKR 75 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECC-CccccccccCCCCCCccCceEEEEecCC----CCCEEEEEEEeCCCC
Confidence 5799999999999753 57899999999985 6778888766678999999999999864 247899999999877
Q ss_pred CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcceEEEEEEEE
Q 035970 84 KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQGILNLGITL 134 (377)
Q Consensus 84 ~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~G~L~LsV~f 134 (377)
+|++||++.+++.++..... ...||+|.. +++..|+|.|.++|
T Consensus 76 ~~~~iG~~~~~l~~~~~~~~-------~~~w~~L~~-~~~~~G~i~l~l~f 118 (118)
T cd08681 76 KPDLIGDTEVDLSPALKEGE-------FDDWYELTL-KGRYAGEVYLELTF 118 (118)
T ss_pred CCcceEEEEEecHHHhhcCC-------CCCcEEecc-CCcEeeEEEEEEEC
Confidence 79999999999999866432 236888875 46789999999986
No 4
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.80 E-value=1.4e-18 Score=146.99 Aligned_cols=117 Identities=24% Similarity=0.338 Sum_probs=98.8
Q ss_pred EEEEEEEEeecCCC--CCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC-
Q 035970 7 VLEISIVSGHDLAL--VSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL- 83 (377)
Q Consensus 7 ~LeVtVISAkdL~~--~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~- 83 (377)
.|+|+|++|++|+. ..+.+||||++.+++...++|++..+ +.||.|||+|.|.+... ...|.|+|||++.+
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~-t~nP~Wne~f~f~v~~~-----~~~l~~~v~D~d~~~ 74 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYK-NLNPVWDEKFTLPIEDV-----TQPLYIKVFDYDRGL 74 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccC-CCCCccceeEEEEecCC-----CCeEEEEEEeCCCCC
Confidence 38999999999964 35789999999998656789998875 79999999999998752 47899999999976
Q ss_pred CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCC-CcceEEEEEEEEEe
Q 035970 84 KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSG-RPQGILNLGITLLD 136 (377)
Q Consensus 84 ~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sG-k~~G~L~LsV~f~p 136 (377)
+|++||.+.++|.++..... ...|++|.++.+ +..|+|+|.++|.|
T Consensus 75 ~~~~iG~~~~~l~~l~~~~~-------~~~~~~L~~~~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 75 TDDFMGSAFVDLSTLELNKP-------TEVKLKLEDPNSDEDLGYISLVVTLTP 121 (121)
T ss_pred CCcceEEEEEEHHHcCCCCC-------eEEEEECCCCCCccCceEEEEEEEECC
Confidence 79999999999999886533 347999987654 78999999999865
No 5
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.79 E-value=1.4e-18 Score=154.45 Aligned_cols=124 Identities=19% Similarity=0.343 Sum_probs=101.1
Q ss_pred EEEEEEEEeecCCC--CCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC-
Q 035970 7 VLEISIVSGHDLAL--VSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL- 83 (377)
Q Consensus 7 ~LeVtVISAkdL~~--~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~- 83 (377)
.|+|+|++|++|.. .++.+||||++.+++ ++.+|++..+++.||+|||+|.|.+.++. ...|.|+|||++..
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~-~~~kTk~~~~~t~nP~WNE~F~f~v~~~~----~~~l~v~V~d~~~~~ 75 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGN-QVLRTRPSQTRNGNPSWNEELMFVAAEPF----EDHLILSVEDRVGPN 75 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECC-EEeeeEeccCCCCCCcccCcEEEEecCcc----CCeEEEEEEEecCCC
Confidence 48999999999964 358999999999985 68899988665799999999999997642 36899999999864
Q ss_pred CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCC--------CcceEEEEEEEEEecC
Q 035970 84 KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSG--------RPQGILNLGITLLDNT 138 (377)
Q Consensus 84 ~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sG--------k~~G~L~LsV~f~p~s 138 (377)
+|++||++.|+|.++..... .......||+|.++.+ +.+|.|+|.|.|....
T Consensus 76 ~dd~lG~v~i~L~~l~~~~~---~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~ 135 (150)
T cd04019 76 KDEPLGRAVIPLNDIERRVD---DRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGY 135 (150)
T ss_pred CCCeEEEEEEEHHHCcccCC---CCccCCceEECcCCCCcccccccCcccccEEEEEEecCcc
Confidence 79999999999999865421 1223458999997654 6789999999998654
No 6
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.79 E-value=1.4e-18 Score=148.41 Aligned_cols=119 Identities=21% Similarity=0.264 Sum_probs=98.8
Q ss_pred EEEEEEEEeecCCCCCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcCCCc
Q 035970 7 VLEISIVSGHDLALVSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWLKDA 86 (377)
Q Consensus 7 ~LeVtVISAkdL~~~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~~Dd 86 (377)
.|.|+|++|++|+.. .+||||++.++. .+.+|+++++ +.||+|||+|.|.+... ....|.|+|||++..+|+
T Consensus 1 ~L~V~Vi~a~~L~~~--~~Dpyv~v~l~~-~~~kT~v~~~-t~nP~Wne~F~f~~~~~----~~~~L~~~v~d~d~~~~~ 72 (121)
T cd08378 1 YLYVRVVKARGLPAN--SNDPVVEVKLGN-YKGSTKAIER-TSNPEWNQVFAFSKDRL----QGSTLEVSVWDKDKAKDD 72 (121)
T ss_pred CEEEEEEEecCCCcc--cCCCEEEEEECC-ccccccccCC-CCCCccceEEEEEcCCC----cCCEEEEEEEeCCCCcCc
Confidence 489999999999866 789999999974 6789999875 78999999999998653 357899999999977999
Q ss_pred eeEEEEEEcccccCCcccCCCCCceeEEEEeeCCC-CCcceEEEEEEEEE
Q 035970 87 LIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPS-GRPQGILNLGITLL 135 (377)
Q Consensus 87 lIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~s-Gk~~G~L~LsV~f~ 135 (377)
+||.+.|+|.++..... .+......||+|.+.. .+..|+|+|+|+|.
T Consensus 73 ~lG~~~i~l~~l~~~~~--~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~~ 120 (121)
T cd08378 73 FLGGVCFDLSEVPTRVP--PDSPLAPQWYRLEDKKGGRVGGELMLAVWFG 120 (121)
T ss_pred eeeeEEEEhHhCcCCCC--CCCCCCcceEEccCCCCCccceEEEEEEEec
Confidence 99999999999875432 1223345799998765 48899999999984
No 7
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.79 E-value=1.9e-18 Score=147.58 Aligned_cols=121 Identities=23% Similarity=0.307 Sum_probs=97.4
Q ss_pred EEEEEEEEeecCCC--CCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC-
Q 035970 7 VLEISIVSGHDLAL--VSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL- 83 (377)
Q Consensus 7 ~LeVtVISAkdL~~--~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~- 83 (377)
.|.|+|++|++|.. ..+.+||||++++++ ++++|++.++ +.||.|||+|.|.+..... .....|.|+|||++.+
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-~~~rT~v~~~-t~nP~Wne~f~f~~~~~~~-~~~~~l~~~V~d~~~~~ 77 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDG-QKKRTRTKPK-DLNPVWNEKLVFNVSDPSR-LSNLVLEVYVYNDRRSG 77 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECC-EEecceeEcC-CCCCccceEEEEEccCHHH-ccCCeEEEEEeeCCCCc
Confidence 38999999999964 357899999999985 6788998865 7999999999999875310 0235799999998865
Q ss_pred -CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCC--CCCcceEEEEEEEEEe
Q 035970 84 -KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRP--SGRPQGILNLGITLLD 136 (377)
Q Consensus 84 -~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~--sGk~~G~L~LsV~f~p 136 (377)
+|+|||++.|+|.++.+... ....||+|.++ .++.+|+|.|.+.|.+
T Consensus 78 ~~d~~lG~v~i~l~~l~~~~~------~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 127 (127)
T cd04022 78 RRRSFLGRVRISGTSFVPPSE------AVVQRYPLEKRGLFSRVRGEIGLKVYITD 127 (127)
T ss_pred CCCCeeeEEEEcHHHcCCCCC------ccceEeEeeeCCCCCCccEEEEEEEEEcC
Confidence 69999999999999874321 23579999865 3578999999999864
No 8
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.78 E-value=3e-18 Score=146.14 Aligned_cols=118 Identities=15% Similarity=0.327 Sum_probs=93.0
Q ss_pred EEEEEEEeecCCC--CCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCC-CCCceEEEEEEEcCcC-
Q 035970 8 LEISIVSGHDLAL--VSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLT-DETSAIMIEIYAAAWL- 83 (377)
Q Consensus 8 LeVtVISAkdL~~--~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~-~~~s~L~VeVyD~d~~- 83 (377)
|+|+|++|++|.. ..+.+||||+|.+++ .+++|+++++ +.||+|||+|.|.+...... .....|.|+|||++.+
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~-~~~kT~v~~~-t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~ 78 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGK-EKYSTSVKEK-TTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLG 78 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECC-eeeeeeeecC-CCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccC
Confidence 5899999999974 357899999999974 6789999876 69999999999999762100 1357899999999865
Q ss_pred CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCC---CCcceEEEEEE
Q 035970 84 KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPS---GRPQGILNLGI 132 (377)
Q Consensus 84 ~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~s---Gk~~G~L~LsV 132 (377)
+|++||++.|+|.++..... .....||+|.... .+..|+|+|.|
T Consensus 79 ~d~~iG~~~i~l~~l~~~~~-----~~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 79 LDKFLGQVSIPLNDLDEDKG-----RRRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred CCceeEEEEEEHHHhhccCC-----CcccEEEECcCCCCCCccccceEEEEe
Confidence 59999999999999873211 1235799998543 35789999987
No 9
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.78 E-value=3.9e-18 Score=147.91 Aligned_cols=110 Identities=25% Similarity=0.392 Sum_probs=90.6
Q ss_pred EEEEEEEEeec---CC--CCCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcC
Q 035970 7 VLEISIVSGHD---LA--LVSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAA 81 (377)
Q Consensus 7 ~LeVtVISAkd---L~--~~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d 81 (377)
.|+|+|++|++ |. +..|.+||||+|++++ ++.+|+++++ +.||+|||+|.|.+... ...|.|+|||++
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~-~~~rTk~~~~-~~nP~WnE~f~f~v~~~-----~~~l~v~V~d~d 73 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGP-KWVRTRTVED-SSNPRWNEQYTWPVYDP-----CTVLTVGVFDNS 73 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECC-EEeEcCcccC-CCCCcceeEEEEEecCC-----CCEEEEEEEECC
Confidence 38999999999 54 3468999999999974 6889999875 79999999999999753 468999999998
Q ss_pred cC-------CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCC---CCcceEEEE
Q 035970 82 WL-------KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPS---GRPQGILNL 130 (377)
Q Consensus 82 ~~-------~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~s---Gk~~G~L~L 130 (377)
.+ +|++||++.|+|..+..+.. ...||+|...+ .+..|.|++
T Consensus 74 ~~~~~~~~~~dd~lG~~~i~l~~l~~~~~-------~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 74 QSHWKEAVQPDVLIGKVRIRLSTLEDDRV-------YAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred CccccccCCCCceEEEEEEEHHHccCCCE-------EeeEEEeEeCCCCCccCCcEEEe
Confidence 65 89999999999999876533 35799999643 467788775
No 10
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.77 E-value=9.1e-18 Score=144.05 Aligned_cols=119 Identities=24% Similarity=0.290 Sum_probs=96.6
Q ss_pred CeEEEEEEEEeecCCCCCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC-
Q 035970 5 PRVLEISIVSGHDLALVSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL- 83 (377)
Q Consensus 5 ~g~LeVtVISAkdL~~~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~- 83 (377)
...|+|+|++|+||+.. +.+||||+|.++.....+|++. + +.||.|||+|.|.+.++. ...|.|.|||++.+
T Consensus 3 ~~~L~V~Vi~A~~L~~~-~~~DPYv~v~l~~~~~~kT~v~-~-~~nP~WnE~f~f~~~~~~----~~~l~v~v~d~~~~~ 75 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK-HVPHPYCVISLNEVKVARTKVR-E-GPNPVWSEEFVFDDLPPD----VNSFTISLSNKAKRS 75 (126)
T ss_pred eeEEEEEEEEeeCCCCC-CCCCeeEEEEECCEeEEEeecC-C-CCCCccCCEEEEecCCCC----cCEEEEEEEECCCCC
Confidence 46799999999999763 5789999999986556789874 3 699999999999876542 25788999998854
Q ss_pred CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCC---CCcceEEEEEEEEEec
Q 035970 84 KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPS---GRPQGILNLGITLLDN 137 (377)
Q Consensus 84 ~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~s---Gk~~G~L~LsV~f~p~ 137 (377)
+|++||.+.|||.++..+.. ...||+|...+ .+..|+|+|+++|.+.
T Consensus 76 ~d~~iG~v~i~l~~l~~~~~-------~~~W~~L~~~~~~~~~~~G~i~l~l~~~~~ 125 (126)
T cd08400 76 KDSEIAEVTVQLSKLQNGQE-------TDEWYPLSSASPLKGGEWGSLRIRARYSHE 125 (126)
T ss_pred CCCeEEEEEEEHhHccCCCc-------ccEeEEcccCCCCCCCcCcEEEEEEEEEcc
Confidence 79999999999999876532 24799998653 4678999999999864
No 11
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.77 E-value=1.3e-17 Score=142.44 Aligned_cols=118 Identities=17% Similarity=0.344 Sum_probs=98.1
Q ss_pred EEEEEEEeecCCCCCCCCCeEEEEEECC-CCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC-CC
Q 035970 8 LEISIVSGHDLALVSKSMKTYSVAWVDP-ERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL-KD 85 (377)
Q Consensus 8 LeVtVISAkdL~~~~g~~DPYVvV~L~p-~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~-~D 85 (377)
|.|+|++|++|+...+.+||||+++++. ..+.+|++..+ +.||+|||.|.|.+.. ....|.|+|||++.. .|
T Consensus 1 l~v~v~~A~~L~~~~g~~dpyv~v~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~-----~~~~l~~~v~d~~~~~~~ 74 (126)
T cd08678 1 LLVKNIKANGLSEAAGSSNPYCVLEMDEPPQKYQSSTQKN-TSNPFWDEHFLFELSP-----NSKELLFEVYDNGKKSDS 74 (126)
T ss_pred CEEEEEEecCCCCCCCCcCCEEEEEECCCCcEEEeEEEec-CCCCccCceEEEEeCC-----CCCEEEEEEEECCCCCCC
Confidence 6899999999976567999999999973 35689999875 7999999999999964 246899999999865 59
Q ss_pred ceeEEEEEEcccccCCcccCCCCCceeEEEEeeCC---CCCcceEEEEEEEEEecC
Q 035970 86 ALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRP---SGRPQGILNLGITLLDNT 138 (377)
Q Consensus 86 dlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~---sGk~~G~L~LsV~f~p~s 138 (377)
++||++.|+|.++..... ...||+|... +....|+|.+.+.|.+.+
T Consensus 75 ~~lG~~~i~l~~l~~~~~-------~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~ 123 (126)
T cd08678 75 KFLGLAIVPFDELRKNPS-------GRQIFPLQGRPYEGDSVSGSITVEFLFMEPA 123 (126)
T ss_pred ceEEEEEEeHHHhccCCc-------eeEEEEecCCCCCCCCcceEEEEEEEEeccc
Confidence 999999999999886543 1368888754 356899999999998775
No 12
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.77 E-value=1e-17 Score=143.27 Aligned_cols=122 Identities=25% Similarity=0.430 Sum_probs=97.8
Q ss_pred EEEEEEEEeecCCCC--CCCCCeEEEEEECCC------CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEE
Q 035970 7 VLEISIVSGHDLALV--SKSMKTYSVAWVDPE------RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIY 78 (377)
Q Consensus 7 ~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~------~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVy 78 (377)
+|+|+|++|++|... .+.+||||++.+.+. .+.+|++.++ +.||.|||+|.|.+... ...|.|+||
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~-----~~~l~~~v~ 74 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKK-TLNPKWNEEFFFRVNPR-----EHRLLFEVF 74 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcC-CCCCcEeeEEEEEEcCC-----CCEEEEEEE
Confidence 489999999999754 578999999999643 2568998765 89999999999999753 467999999
Q ss_pred EcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCC--CCCcceEEEEEEEEE
Q 035970 79 AAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRP--SGRPQGILNLGITLL 135 (377)
Q Consensus 79 D~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~--sGk~~G~L~LsV~f~ 135 (377)
|++.+ .|++||.+.|++.++....+. ........||+|..+ .++..|+|+|+|.|.
T Consensus 75 d~~~~~~~~~iG~~~i~l~~l~~~~~~-~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 75 DENRLTRDDFLGQVEVPLNNLPTETPG-NERRYTFKDYLLRPRSSKSRVKGHLRLYMAYL 133 (133)
T ss_pred ECCCCCCCCeeEEEEEEHHHCCCcCcc-ccccccchheeeeecCCCCcceeEEEEEEeeC
Confidence 99966 689999999999998865331 112235679999864 567899999999884
No 13
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.77 E-value=1.3e-17 Score=142.72 Aligned_cols=119 Identities=17% Similarity=0.305 Sum_probs=98.2
Q ss_pred CCeEEEEEEEEeecCCCC--CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcC
Q 035970 4 PPRVLEISIVSGHDLALV--SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAA 81 (377)
Q Consensus 4 p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d 81 (377)
|..+|+|+|++|++|... .+.+||||++++++ ++.+|++.++ +.||+|||.|.|.+.. ....|.|+|||++
T Consensus 1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~-~~~kT~v~~~-t~nP~Wne~f~f~~~~-----~~~~l~i~V~d~~ 73 (126)
T cd04046 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEG-ESVRSPVQKD-TLSPEFDTQAIFYRKK-----PRSPIKIQVWNSN 73 (126)
T ss_pred CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEECC-EEEEeCccCC-CCCCcccceEEEEecC-----CCCEEEEEEEECC
Confidence 467899999999999753 57899999999975 5789999865 7999999999998875 3578999999999
Q ss_pred cCCCceeEEEEEEcccccCCcccCCCCCceeEEEEee----CCCCCcceEEEEEEEEEecC
Q 035970 82 WLKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVR----RPSGRPQGILNLGITLLDNT 138 (377)
Q Consensus 82 ~~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lr----r~sGk~~G~L~LsV~f~p~s 138 (377)
.++|++||.+.+++..+.... ..+|+|. ..+++..|+|.|++.+.+..
T Consensus 74 ~~~d~~lG~~~~~l~~~~~~~---------~~~~~l~~~~~~~~~~~~G~i~~~~~~~~~~ 125 (126)
T cd04046 74 LLCDEFLGQATLSADPNDSQT---------LRTLPLRKRGRDAAGEVPGTISVKVTSSDDL 125 (126)
T ss_pred CCCCCceEEEEEecccCCCcC---------ceEEEcccCCCCCCCCCCCEEEEEEEEcccc
Confidence 888999999999998753221 2456664 35788999999999988764
No 14
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.77 E-value=1.2e-17 Score=149.48 Aligned_cols=118 Identities=19% Similarity=0.303 Sum_probs=97.7
Q ss_pred CeEEEEEEEEeecCCCC--------------------------------CCCCCeEEEEEECCCCeEEeEeeCCCCCCCe
Q 035970 5 PRVLEISIVSGHDLALV--------------------------------SKSMKTYSVAWVDPERKLTTRVDQNGLNNPS 52 (377)
Q Consensus 5 ~g~LeVtVISAkdL~~~--------------------------------~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~ 52 (377)
.++|+|+|++|++|++. .+.+||||+|++++....+|+++++ +.||.
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~-~~nP~ 84 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIEN-SENPV 84 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCC-CCCCc
Confidence 58999999999999642 2468999999998655579999875 69999
Q ss_pred eeeEEEEEeccCCCCCCCceEEEEEEEcCcCCCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCC---cceEEE
Q 035970 53 WNEKFVFRVDDRFLTDETSAIMIEIYAAAWLKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGR---PQGILN 129 (377)
Q Consensus 53 WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk---~~G~L~ 129 (377)
|||+|.|.+... ...|.|+|||++.+++++||.+.|||.++..+.. ...||+|....++ ..+.|+
T Consensus 85 WnE~F~~~~~~~-----~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~-------~~~w~~L~~~~~~~~~~~~~l~ 152 (158)
T cd04015 85 WNESFHIYCAHY-----ASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEP-------VEGWLPILDSNGKPPKPGAKIR 152 (158)
T ss_pred cceEEEEEccCC-----CCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCC-------cceEEECcCCCCCCCCCCCEEE
Confidence 999999998653 4689999999998889999999999999876432 3579999876553 568999
Q ss_pred EEEEEE
Q 035970 130 LGITLL 135 (377)
Q Consensus 130 LsV~f~ 135 (377)
|+++|.
T Consensus 153 v~~~f~ 158 (158)
T cd04015 153 VSLQFT 158 (158)
T ss_pred EEEEEC
Confidence 999883
No 15
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.76 E-value=1.2e-17 Score=140.24 Aligned_cols=119 Identities=24% Similarity=0.359 Sum_probs=97.1
Q ss_pred CeEEEEEEEEeecCCCC---CCCCCeEEEEEECC-CCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEc
Q 035970 5 PRVLEISIVSGHDLALV---SKSMKTYSVAWVDP-ERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAA 80 (377)
Q Consensus 5 ~g~LeVtVISAkdL~~~---~g~~DPYVvV~L~p-~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~ 80 (377)
.+.|+|+|++|++|+.. .+.+||||++++++ ....+|+++.+ +.||.|||.|.|.+.. ....|.|+|||+
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~-~~~P~Wne~~~~~v~~-----~~~~l~~~v~d~ 74 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKD-TSNPVWNETKYILVNS-----LTEPLNLTVYDF 74 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecC-CCCCcceEEEEEEeCC-----CCCEEEEEEEec
Confidence 36899999999999743 35789999999986 46789998865 7999999999999884 357899999999
Q ss_pred CcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcceEEEEEEEEEe
Q 035970 81 AWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQGILNLGITLLD 136 (377)
Q Consensus 81 d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~G~L~LsV~f~p 136 (377)
+.. .|++||.+.++|.++...... ...++.+. .+++.+|+|+|+++|.|
T Consensus 75 ~~~~~d~~iG~~~~~l~~l~~~~~~------~~~~~~~~-~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 75 NDKRKDKLIGTAEFDLSSLLQNPEQ------ENLTKNLL-RNGKPVGELNYDLRFFP 124 (124)
T ss_pred CCCCCCceeEEEEEEHHHhccCccc------cCcchhhh-cCCccceEEEEEEEeCC
Confidence 865 789999999999999875431 12334443 57889999999999975
No 16
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.75 E-value=2.4e-17 Score=139.05 Aligned_cols=113 Identities=19% Similarity=0.351 Sum_probs=92.8
Q ss_pred EEEEEEEEeecCCCC--CCCCCeEEEEEECC--CCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCc
Q 035970 7 VLEISIVSGHDLALV--SKSMKTYSVAWVDP--ERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAW 82 (377)
Q Consensus 7 ~LeVtVISAkdL~~~--~g~~DPYVvV~L~p--~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~ 82 (377)
.|.|+|++|++|+.. .+.+||||++.+.+ ..+.+|+++++ +.||.|||+|.|.+... ....|.|+|||++.
T Consensus 1 ~L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~-t~nP~Wne~f~f~i~~~----~~~~l~v~v~d~d~ 75 (119)
T cd04036 1 LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKN-SINPVWNETFEFRIQSQ----VKNVLELTVMDEDY 75 (119)
T ss_pred CeEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecC-CCCCccceEEEEEeCcc----cCCEEEEEEEECCC
Confidence 389999999999754 47899999999963 35678998876 79999999999998764 24679999999997
Q ss_pred CCCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcceEEEEEEEE
Q 035970 83 LKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQGILNLGITL 134 (377)
Q Consensus 83 ~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~G~L~LsV~f 134 (377)
++|++||++.++|.++..+.. ...||+|... ..|+|++.+.+
T Consensus 76 ~~~~~iG~~~~~l~~l~~g~~-------~~~~~~L~~~---~~g~l~~~~~~ 117 (119)
T cd04036 76 VMDDHLGTVLFDVSKLKLGEK-------VRVTFSLNPQ---GKEELEVEFLL 117 (119)
T ss_pred CCCcccEEEEEEHHHCCCCCc-------EEEEEECCCC---CCceEEEEEEe
Confidence 799999999999999876532 3578988643 58888888876
No 17
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.75 E-value=3.9e-17 Score=139.56 Aligned_cols=114 Identities=22% Similarity=0.315 Sum_probs=94.7
Q ss_pred EEEEEEEeecCCCC---CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC-
Q 035970 8 LEISIVSGHDLALV---SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL- 83 (377)
Q Consensus 8 LeVtVISAkdL~~~---~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~- 83 (377)
|.|+|+.|++|+.. .+.+||||.|.++.....+|++.++ +.||.|||+|.|.|.+. ...|.|.|||++.+
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~k-t~~P~WnE~F~f~v~~~-----~~~l~~~v~d~~~~~ 75 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEK-SLCPFFGEDFYFEIPRT-----FRHLSFYIYDRDVLR 75 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEEC-CCCCccCCeEEEEcCCC-----CCEEEEEEEECCCCC
Confidence 78999999999753 3688999999997555688999865 89999999999999853 46899999999865
Q ss_pred CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeC--CCCCcceEEEEEEEE
Q 035970 84 KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRR--PSGRPQGILNLGITL 134 (377)
Q Consensus 84 ~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr--~sGk~~G~L~LsV~f 134 (377)
+|++||.+.++|+++..... ...||+|.. +.++.+|+|+|+++|
T Consensus 76 ~~~~iG~~~i~l~~l~~~~~-------~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 76 RDSVIGKVAIKKEDLHKYYG-------KDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred CCceEEEEEEEHHHccCCCC-------cEeeEEEEccCCCCcccEEEEEEEEC
Confidence 79999999999999875422 357999985 345679999999875
No 18
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.74 E-value=6.7e-17 Score=135.29 Aligned_cols=114 Identities=18% Similarity=0.323 Sum_probs=94.8
Q ss_pred eEEEEEEEEeecCCC--CCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCc-
Q 035970 6 RVLEISIVSGHDLAL--VSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAW- 82 (377)
Q Consensus 6 g~LeVtVISAkdL~~--~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~- 82 (377)
+.|+|+|++|++|+. ..+.+||||++.+.. ...+|+++++ +.||.|||+|.|.+.+. ...|.|+|||++.
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-~~~~T~~~~~-t~nP~W~e~f~~~~~~~-----~~~l~~~v~d~~~~ 73 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVN-ARLQTHTIYK-TLNPEWNKIFTFPIKDI-----HDVLEVTVYDEDKD 73 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECC-EeeecceecC-CcCCccCcEEEEEecCc-----CCEEEEEEEECCCC
Confidence 579999999999975 357899999999974 4678998875 79999999999998752 4789999999986
Q ss_pred CCCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCC--CCcceEEEEEEEEE
Q 035970 83 LKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPS--GRPQGILNLGITLL 135 (377)
Q Consensus 83 ~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~s--Gk~~G~L~LsV~f~ 135 (377)
..+++||++.++|.++..+. ..||+|..+. ++.+|+|.|++.|.
T Consensus 74 ~~~~~iG~~~~~l~~~~~~~---------~~~~~l~~~~~~~~~~G~i~l~~~~~ 119 (119)
T cd08377 74 KKPEFLGKVAIPLLSIKNGE---------RKWYALKDKKLRTRAKGSILLEMDVI 119 (119)
T ss_pred CCCceeeEEEEEHHHCCCCC---------ceEEECcccCCCCceeeEEEEEEEeC
Confidence 47899999999999986442 2699998653 46899999999873
No 19
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.73 E-value=5.6e-17 Score=135.69 Aligned_cols=113 Identities=21% Similarity=0.306 Sum_probs=93.5
Q ss_pred eEEEEEEEEeecCCCC--------CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEE
Q 035970 6 RVLEISIVSGHDLALV--------SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEI 77 (377)
Q Consensus 6 g~LeVtVISAkdL~~~--------~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeV 77 (377)
+.|+|+|++|++|... .+.+||||++.+++ ...+|++.++ +.||.|||.|.|.+.+. ....|.|+|
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~-~~~kT~~~~~-t~~P~W~e~f~~~v~~~----~~~~l~i~v 74 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA-QTFKSKVIKE-NLNPKWNEVYEAVVDEV----PGQELEIEL 74 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECC-EeEEccccCC-CCCCcccceEEEEeCCC----CCCEEEEEE
Confidence 5799999999999743 25789999999985 6789998775 79999999999999753 357899999
Q ss_pred EEcCcCCCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcceEEEEEEEE
Q 035970 78 YAAAWLKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQGILNLGITL 134 (377)
Q Consensus 78 yD~d~~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~G~L~LsV~f 134 (377)
||++..+|++||.+.++|.++..... ...||+|.+. .+|.|+|.+.|
T Consensus 75 ~d~~~~~~~~iG~~~i~l~~l~~~~~-------~~~w~~L~~~---~~G~~~~~~~~ 121 (121)
T cd08391 75 FDEDPDKDDFLGRLSIDLGSVEKKGF-------IDEWLPLEDV---KSGRLHLKLEW 121 (121)
T ss_pred EecCCCCCCcEEEEEEEHHHhcccCc-------cceEEECcCC---CCceEEEEEeC
Confidence 99987799999999999999875432 2479998743 68999988764
No 20
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.73 E-value=1.1e-16 Score=139.86 Aligned_cols=121 Identities=21% Similarity=0.354 Sum_probs=96.6
Q ss_pred CCCeEEEEEEEEeecCCC--CCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEc
Q 035970 3 PPPRVLEISIVSGHDLAL--VSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAA 80 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~--~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~ 80 (377)
.+.+.|+|+|++|++|.. ..+.+||||++.++ ...++|+++++ +.||.|||+|.|.+.+. ....|.|+|||+
T Consensus 12 ~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~-~~~~kT~vi~~-t~nP~Wne~f~f~v~~~----~~~~l~i~V~D~ 85 (136)
T cd08375 12 SGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMG-SQEHKTKVVSD-TLNPKWNSSMQFFVKDL----EQDVLCITVFDR 85 (136)
T ss_pred CCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEEC-CEeeeccccCC-CCCCccCceEEEEecCc----cCCEEEEEEEEC
Confidence 467899999999999975 36899999999997 46789999875 79999999999999764 247899999999
Q ss_pred CcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcceEEEEEEEE
Q 035970 81 AWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQGILNLGITL 134 (377)
Q Consensus 81 d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~G~L~LsV~f 134 (377)
+.+ .|++||.+.|+|.++...... ....-..++++ +++..|+|+|++.|
T Consensus 86 d~~~~d~~lG~~~i~l~~l~~~~~~--~~~~~~~~~~~---~~~~~g~i~l~~~~ 135 (136)
T cd08375 86 DFFSPDDFLGRTEIRVADILKETKE--SKGPITKRLLL---HEVPTGEVVVKLDL 135 (136)
T ss_pred CCCCCCCeeEEEEEEHHHhcccccc--CCCcEEEEecc---ccccceeEEEEEEe
Confidence 865 589999999999999864321 11212234444 47789999999987
No 21
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.73 E-value=2.1e-17 Score=149.28 Aligned_cols=95 Identities=26% Similarity=0.425 Sum_probs=84.4
Q ss_pred CCCCCeEEEEEEEEeecCC--CCCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEE
Q 035970 1 MVPPPRVLEISIVSGHDLA--LVSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIY 78 (377)
Q Consensus 1 ~~~p~g~LeVtVISAkdL~--~~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVy 78 (377)
|..+.+.|+|.|++|.+|. +..+++||||++.++ .++++|++..+ +.||+|||.|.|.|.++ ...|.+.||
T Consensus 1 m~~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg-~q~lkT~~v~~-n~NPeWNe~ltf~v~d~-----~~~lkv~Vy 73 (168)
T KOG1030|consen 1 MEMLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELG-NQKLKTRVVYK-NLNPEWNEELTFTVKDP-----NTPLKVTVY 73 (168)
T ss_pred CCccceEEEEEEEeecCeeeeccccCCCCeEEEEEC-CeeeeeeeecC-CCCCcccceEEEEecCC-----CceEEEEEE
Confidence 6678899999999999995 455899999999998 57899998865 79999999999999985 689999999
Q ss_pred EcCcC-CCceeEEEEEEcccccCCc
Q 035970 79 AAAWL-KDALIGSVRVLISHLFGTL 102 (377)
Q Consensus 79 D~d~~-~DdlIG~a~IpLs~L~~~~ 102 (377)
|+|.+ .|||+|.|.|+|..++...
T Consensus 74 D~D~fs~dD~mG~A~I~l~p~~~~~ 98 (168)
T KOG1030|consen 74 DKDTFSSDDFMGEATIPLKPLLEAQ 98 (168)
T ss_pred eCCCCCcccccceeeeccHHHHHHh
Confidence 99976 6999999999999987754
No 22
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.73 E-value=1.4e-16 Score=135.93 Aligned_cols=117 Identities=22% Similarity=0.237 Sum_probs=97.8
Q ss_pred EEEeecCCCCCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC-CCceeEE
Q 035970 12 IVSGHDLALVSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL-KDALIGS 90 (377)
Q Consensus 12 VISAkdL~~~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~-~DdlIG~ 90 (377)
|++|++|.+..+.+||||+|++.. .+++|++.++ +.||+|||+|.|.+.... .....|.|+|||++.. .|++||+
T Consensus 2 vi~a~~L~~~~g~~Dpyv~v~~~~-~~~kT~v~~~-~~nP~Wne~f~f~~~~~~--~~~~~l~~~v~d~~~~~~d~~iG~ 77 (127)
T cd08373 2 VVSLKNLPGLKGKGDRIAKVTFRG-VKKKTRVLEN-ELNPVWNETFEWPLAGSP--DPDESLEIVVKDYEKVGRNRLIGS 77 (127)
T ss_pred eEEeeCCcccCCCCCCEEEEEECC-EeeecceeCC-CcCCcccceEEEEeCCCc--CCCCEEEEEEEECCCCCCCceEEE
Confidence 789999988778999999999974 5789999875 699999999999997542 2468899999999865 6899999
Q ss_pred EEEEcccccCCcccCCCCCceeEEEEeeCCCCC-cceEEEEEEEEEecCC
Q 035970 91 VRVLISHLFGTLTHNSSSSTRYVALQVRRPSGR-PQGILNLGITLLDNTM 139 (377)
Q Consensus 91 a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk-~~G~L~LsV~f~p~s~ 139 (377)
+.++|.++..... ...|++|.+.+++ ..|+|++.+.|.+...
T Consensus 78 ~~~~l~~l~~~~~-------~~~~~~L~~~~~~~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 78 ATVSLQDLVSEGL-------LEVTEPLLDSNGRPTGATISLEVSYQPPDG 120 (127)
T ss_pred EEEEhhHcccCCc-------eEEEEeCcCCCCCcccEEEEEEEEEeCCCC
Confidence 9999999876532 3579999876665 5899999999998863
No 23
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.72 E-value=7.8e-17 Score=138.71 Aligned_cols=105 Identities=17% Similarity=0.257 Sum_probs=83.0
Q ss_pred EEEEEEEEeecCCCC-CCCCCeEEEEEEC----CC--CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEE
Q 035970 7 VLEISIVSGHDLALV-SKSMKTYSVAWVD----PE--RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYA 79 (377)
Q Consensus 7 ~LeVtVISAkdL~~~-~g~~DPYVvV~L~----p~--~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD 79 (377)
.|.|+|++|++|+.. .|.+||||+|++. +. ++++|++.. ++.||+|||+|.|.|..... .....|.|.|||
T Consensus 1 kL~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~-~tlnPvwNE~f~F~v~~~~~-~~~~~L~~~V~D 78 (120)
T cd08395 1 KVTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKN-NNWSPKYNETFQFILGNEDD-PESYELHICVKD 78 (120)
T ss_pred CEEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEec-CCCCCccCcEEEEEeeCcCC-CceeEEEEEEEE
Confidence 389999999999653 4789999999983 22 356898875 58999999999999975310 134679999999
Q ss_pred cCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCC
Q 035970 80 AAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRP 120 (377)
Q Consensus 80 ~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~ 120 (377)
++.. .|++||++.|||.++..... ...|++|.++
T Consensus 79 ~d~~~~dd~IG~~~l~l~~~~~~~~-------~~~w~~L~~~ 113 (120)
T cd08395 79 YCFARDDRLVGVTVLQLRDIAQAGS-------CACWLPLGRR 113 (120)
T ss_pred ecccCCCCEEEEEEEEHHHCcCCCc-------EEEEEECcCc
Confidence 9866 48999999999999986542 3579988754
No 24
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.72 E-value=6.6e-17 Score=140.84 Aligned_cols=101 Identities=19% Similarity=0.289 Sum_probs=84.5
Q ss_pred CeEEEEEEEEeecCCCCCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcCC
Q 035970 5 PRVLEISIVSGHDLALVSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWLK 84 (377)
Q Consensus 5 ~g~LeVtVISAkdL~~~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~~ 84 (377)
++.|.|+|++|++|.+. +..||||+|.++ .++.+|++.++ .||.|||+|.|.+... ...|.|+|||++.+.
T Consensus 1 m~~L~V~Vv~Ar~L~~~-~~~dPYV~Ik~g-~~k~kT~v~~~--~nP~WnE~F~F~~~~~-----~~~L~v~V~dkd~~~ 71 (127)
T cd08394 1 MSLLCVLVKKAKLDGAP-DKFNTYVTLKVQ-NVKSTTIAVRG--SQPCWEQDFMFEINRL-----DLGLVIELWNKGLIW 71 (127)
T ss_pred CceEEEEEEEeeCCCCC-CCCCCeEEEEEC-CEEeEeeECCC--CCCceeeEEEEEEcCC-----CCEEEEEEEeCCCcC
Confidence 36899999999999764 456999999997 47888998753 5999999999999763 455999999999889
Q ss_pred CceeEEEEEEcccccCCcccCCCCCceeEEEEeeC
Q 035970 85 DALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRR 119 (377)
Q Consensus 85 DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr 119 (377)
|+|||++.|+|.++..+. ..+...||+|..
T Consensus 72 DD~lG~v~i~L~~v~~~~-----~~~~~~Wy~L~~ 101 (127)
T cd08394 72 DTLVGTVWIPLSTIRQSN-----EEGPGEWLTLDS 101 (127)
T ss_pred CCceEEEEEEhHHcccCC-----CCCCCccEecCh
Confidence 999999999999998763 334468999984
No 25
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.72 E-value=1e-16 Score=136.69 Aligned_cols=112 Identities=22% Similarity=0.398 Sum_probs=91.5
Q ss_pred EEEEEEEeecCCCC--CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcCC-
Q 035970 8 LEISIVSGHDLALV--SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWLK- 84 (377)
Q Consensus 8 LeVtVISAkdL~~~--~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~~- 84 (377)
|+|+|++|++|+.. .+.+||||++++++...++|+++++ +.||.|||+|.|.+.. ...|.|+|||++.++
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~-t~nP~Wne~f~~~~~~------~~~l~i~V~d~~~~~~ 74 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKK-TLDPKWNEHFDLTVGP------SSIITIQVFDQKKFKK 74 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcC-CCCCcccceEEEEeCC------CCEEEEEEEECCCCCC
Confidence 89999999999753 5789999999997667889999865 7999999999999974 479999999998653
Q ss_pred --CceeEEEEEEcccccCCcccCCCCCceeEEEEeeCC----CCCcceEEEEEE
Q 035970 85 --DALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRP----SGRPQGILNLGI 132 (377)
Q Consensus 85 --DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~----sGk~~G~L~LsV 132 (377)
|+|||++.+++.++..... ....||+|+.. .+...|+|.+.+
T Consensus 75 ~~d~~lG~~~i~l~~l~~~~~------~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 75 KDQGFLGCVRIRANAVLPLKD------TGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred CCCceEeEEEEEHHHccccCC------CccceeEeecCCCCCCceEeeEEEEEe
Confidence 5799999999999876432 12358888753 356789988875
No 26
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.72 E-value=1.3e-16 Score=134.87 Aligned_cols=119 Identities=16% Similarity=0.292 Sum_probs=95.7
Q ss_pred eEEEEEEEEeecCCC--C--CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcC
Q 035970 6 RVLEISIVSGHDLAL--V--SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAA 81 (377)
Q Consensus 6 g~LeVtVISAkdL~~--~--~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d 81 (377)
+.|.|+|++|++|.. . .+.+||||++.++ ..+.+|+++++ +.||.|||+|.|.+... ....|.|+|||++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~-~~~~kT~~~~~-t~~P~Wne~f~~~~~~~----~~~~l~i~v~d~~ 74 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVG-AQRFKTQTIPN-TLNPKWNYWCEFPIFSA----QNQLLKLILWDKD 74 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEEC-CEEEecceecC-CcCCccCCcEEEEecCC----CCCEEEEEEEECC
Confidence 579999999999964 4 5789999999997 46789998875 79999999999999863 3578999999998
Q ss_pred cC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCC----CCcceEEEEEEEE
Q 035970 82 WL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPS----GRPQGILNLGITL 134 (377)
Q Consensus 82 ~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~s----Gk~~G~L~LsV~f 134 (377)
.+ .|++||.+.|+|.++..... ......||.|.... ...+|+|+|.+.+
T Consensus 75 ~~~~~~~lG~~~i~l~~~~~~~~----~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 75 RFAGKDYLGEFDIALEEVFADGK----TGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCCCCCcceEEEEEHHHhhcccc----cCccceeEEccCcccCccccccceEEEEEEC
Confidence 65 78999999999999874211 12235799988542 3589999998864
No 27
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.72 E-value=2.1e-16 Score=132.18 Aligned_cols=112 Identities=26% Similarity=0.372 Sum_probs=92.5
Q ss_pred EEEEEEEEeecCCCC--CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC-
Q 035970 7 VLEISIVSGHDLALV--SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL- 83 (377)
Q Consensus 7 ~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~- 83 (377)
+|+|+|++|++|+.. .+.+||||++.++ ..+.+|++.++ +.||.|||+|.|.+.+. ....|.|+|||++.+
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~-~~~~kT~v~~~-t~nP~Wne~f~f~~~~~----~~~~l~v~v~d~~~~~ 74 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLG-NEKYKSKVCSK-TLNPQWLEQFDLHLFDD----QSQILEIEVWDKDTGK 74 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEEC-CEeEecccccC-CCCCceeEEEEEEecCC----CCCEEEEEEEECCCCC
Confidence 478999999999753 5789999999997 46788998765 79999999999998764 257899999999865
Q ss_pred CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcceEEEEEEEEE
Q 035970 84 KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQGILNLGITLL 135 (377)
Q Consensus 84 ~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~G~L~LsV~f~ 135 (377)
.|++||.+.++|.++..... ...||+|... .|.|++.+.+.
T Consensus 75 ~~~~iG~~~~~l~~l~~~~~-------~~~w~~L~~~----~G~~~~~~~~~ 115 (116)
T cd08376 75 KDEFIGRCEIDLSALPREQT-------HSLELELEDG----EGSLLLLLTLT 115 (116)
T ss_pred CCCeEEEEEEeHHHCCCCCc-------eEEEEEccCC----CcEEEEEEEec
Confidence 69999999999999875432 4679998744 58898888764
No 28
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.71 E-value=1.7e-16 Score=134.46 Aligned_cols=113 Identities=22% Similarity=0.338 Sum_probs=92.4
Q ss_pred EEEEEEEeecCCCC--CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC-C
Q 035970 8 LEISIVSGHDLALV--SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL-K 84 (377)
Q Consensus 8 LeVtVISAkdL~~~--~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~-~ 84 (377)
|+|+|++|++|... .+.+||||+|+++. .+.+|+++++ +.||.|||+|.|.+... ....|.|+|||++.+ .
T Consensus 2 L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~-~~~kT~v~~~-t~nP~Wne~f~f~~~~~----~~~~l~~~v~d~~~~~~ 75 (123)
T cd04025 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNG-QTLETSVVKK-SCYPRWNEVFEFELMEG----ADSPLSVEVWDWDLVSK 75 (123)
T ss_pred EEEEEEEeeCCCCCCCCCCcCceEEEEECC-EEEeceeecC-CCCCccCcEEEEEcCCC----CCCEEEEEEEECCCCCC
Confidence 89999999999643 57899999999974 5788998875 79999999999999864 246899999999865 5
Q ss_pred CceeEEEEEEcccccCCcccCCCCCceeEEEEeeC------CCCCcceEEEEEEE
Q 035970 85 DALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRR------PSGRPQGILNLGIT 133 (377)
Q Consensus 85 DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr------~sGk~~G~L~LsV~ 133 (377)
|++||.+.++|.++..... ...||.|.. ++++..|.|.|.|+
T Consensus 76 ~~~iG~~~~~l~~l~~~~~-------~~~w~~L~~~~~~~~~~~~~~G~l~~~~~ 123 (123)
T cd04025 76 NDFLGKVVFSIQTLQQAKQ-------EEGWFRLLPDPRAEEESGGNLGSLRLKVR 123 (123)
T ss_pred CcEeEEEEEEHHHcccCCC-------CCCEEECCCCCCCCccccCceEEEEEEeC
Confidence 8999999999999865432 136888885 35678999999874
No 29
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.71 E-value=1.9e-16 Score=134.66 Aligned_cols=114 Identities=22% Similarity=0.315 Sum_probs=92.8
Q ss_pred EEEEEEEeecCCC--CCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC-C
Q 035970 8 LEISIVSGHDLAL--VSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL-K 84 (377)
Q Consensus 8 LeVtVISAkdL~~--~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~-~ 84 (377)
|.|+|++|++|.. ..+.+||||++.+++....+|+++++ +.||.|||.|.|.+... ...|.|+|||++.+ .
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~-t~nP~Wne~f~~~~~~~-----~~~l~v~v~d~~~~~~ 75 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWK-TLNPFWGEEYTVHLPPG-----FHTVSFYVLDEDTLSR 75 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcC-CCCCcccceEEEeeCCC-----CCEEEEEEEECCCCCC
Confidence 8999999999974 35789999999997544579999876 79999999999998752 46899999999965 6
Q ss_pred CceeEEEEEEcccccCCcccCCCCCceeEEEEeeC--CCCCcceEEEEEEE
Q 035970 85 DALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRR--PSGRPQGILNLGIT 133 (377)
Q Consensus 85 DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr--~sGk~~G~L~LsV~ 133 (377)
|++||++.+++..+..... ....|++|.. +.+...|+|+|.++
T Consensus 76 d~~iG~~~~~~~~~~~~~~------~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 76 DDVIGKVSLTREVISAHPR------GIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred CCEEEEEEEcHHHhccCCC------CCCcEEECeeeCCCCccccEEEEEEE
Confidence 8999999999988764321 1246999864 55678999999876
No 30
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.70 E-value=6.8e-17 Score=139.12 Aligned_cols=93 Identities=13% Similarity=0.315 Sum_probs=80.2
Q ss_pred CCCeEEEEEEEEeecCCCCCCCCCeEEEEEECCC---CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEE
Q 035970 3 PPPRVLEISIVSGHDLALVSKSMKTYSVAWVDPE---RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYA 79 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~~~g~~DPYVvV~L~p~---~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD 79 (377)
+..+.|.|+|++|++|+ ..+.+||||++++.+. .+++|+|.++ +.||+|||+|.|.|....+ ....|.|.|||
T Consensus 11 ~~~~~L~V~vikA~~L~-~~g~sDPYVKv~L~~~~k~~k~kT~v~rk-tlnPvfnE~f~F~v~~~~l--~~~tL~~~V~d 86 (118)
T cd08677 11 KQKAELHVNILEAENIS-VDAGCECYISGCVSVSEGQKEAQTALKKL-ALHTQWEEELVFPLPEEES--LDGTLTLTLRC 86 (118)
T ss_pred CcCCEEEEEEEEecCCC-CCCCCCeEEEEEEcCCcCccEEEcceecC-CCCCccccEEEEeCCHHHh--CCcEEEEEEEe
Confidence 45688999999999998 5567999999999752 5788999875 8999999999999987655 56789999999
Q ss_pred cCcC-CCceeEEEEEEccccc
Q 035970 80 AAWL-KDALIGSVRVLISHLF 99 (377)
Q Consensus 80 ~d~~-~DdlIG~a~IpLs~L~ 99 (377)
+|.+ ++++||++.++++++.
T Consensus 87 ~Drfs~~d~IG~v~l~l~~~~ 107 (118)
T cd08677 87 CDRFSRHSTLGELRLKLADVS 107 (118)
T ss_pred CCCCCCCceEEEEEEcccccc
Confidence 9965 7999999999999863
No 31
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.70 E-value=1.2e-16 Score=142.16 Aligned_cols=107 Identities=21% Similarity=0.289 Sum_probs=83.9
Q ss_pred EEEEEEEEeecCCCCCCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccC----------CCCC-CCc
Q 035970 7 VLEISIVSGHDLALVSKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDR----------FLTD-ETS 71 (377)
Q Consensus 7 ~LeVtVISAkdL~~~~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~----------~L~~-~~s 71 (377)
.|.|+|++|++|...+|.+||||+|.+.+. .+.+|+|+++ +.||+|||+|.|.+... ...+ ...
T Consensus 1 kL~V~Vi~ArnL~~~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~-t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T cd04010 1 KLSVRVIECSDLALKNGTCDPYASVTLIYSNKKQDTKRTKVKKK-TNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL 79 (148)
T ss_pred CEEEEEEeCcCCCCCCCCCCceEEEEEeCCcccCcccCCccEeC-CCCCccceEEEEEEecccccccccccCCcccccEE
Confidence 389999999999876789999999999753 5678998875 79999999999999511 0001 235
Q ss_pred eEEEEEEEcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCC
Q 035970 72 AIMIEIYAAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRP 120 (377)
Q Consensus 72 ~L~VeVyD~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~ 120 (377)
.|.|.|||++.+ .|+|||++.|+|..+..... ....||+|...
T Consensus 80 ~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~------~~~~W~~L~~~ 123 (148)
T cd04010 80 ELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAG------SHQAWYFLQPR 123 (148)
T ss_pred EEEEEEEcCCCCCCCceeEEEEEecccccccCC------cCcceeecCCc
Confidence 799999999865 79999999999999876511 12479999854
No 32
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.70 E-value=5.3e-16 Score=133.29 Aligned_cols=115 Identities=22% Similarity=0.346 Sum_probs=93.3
Q ss_pred CeEEEEEEEEeecCCCCC------------CCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCce
Q 035970 5 PRVLEISIVSGHDLALVS------------KSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSA 72 (377)
Q Consensus 5 ~g~LeVtVISAkdL~~~~------------g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~ 72 (377)
.+.|+|+|++|++|.... +.+||||++++++....+|++..+ +.||.|||+|.|.+.+ ...
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~-t~~P~Wne~f~~~v~~------~~~ 75 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPK-TNSPVWNEEFTTEVHN------GRN 75 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCC-CCCCCcceeEEEEcCC------CCE
Confidence 378999999999996431 478999999998655578998765 7999999999999974 478
Q ss_pred EEEEEEEcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcceEEEEEEEEEe
Q 035970 73 IMIEIYAAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQGILNLGITLLD 136 (377)
Q Consensus 73 L~VeVyD~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~G~L~LsV~f~p 136 (377)
|.|+|||++.+ .|++||.+.++|.++..... .....||+|. ++|.|+|.+.+..
T Consensus 76 l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~-----~~~~~w~~L~-----~~G~l~l~~~~~~ 130 (132)
T cd04014 76 LELTVFHDAAIGPDDFVANCTISFEDLIQRGS-----GSFDLWVDLE-----PQGKLHVKIELKG 130 (132)
T ss_pred EEEEEEeCCCCCCCceEEEEEEEhHHhcccCC-----CcccEEEEcc-----CCcEEEEEEEEec
Confidence 99999998855 68999999999999887311 1135799886 5799999998865
No 33
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.69 E-value=1.4e-16 Score=136.31 Aligned_cols=103 Identities=17% Similarity=0.300 Sum_probs=82.8
Q ss_pred CeEEEEEEEEeecCCCC-CCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEe-ccCCCCCCCceEEEEEE
Q 035970 5 PRVLEISIVSGHDLALV-SKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRV-DDRFLTDETSAIMIEIY 78 (377)
Q Consensus 5 ~g~LeVtVISAkdL~~~-~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V-~~~~L~~~~s~L~VeVy 78 (377)
.+.|.|+|++|++|... .+.+||||++++.+. .+.+|+++++ +.||.|||+|.|.+ +...+ ....|.|+||
T Consensus 12 ~~~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT~v~~~-~~nP~wnE~F~f~~~~~~~l--~~~~L~~~V~ 88 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRK-TRNPTFNEMLVYDGLPVEDL--QQRVLQVSVW 88 (122)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeCCccCC-CCCCCcccEEEEecCChHHh--CCCEEEEEEE
Confidence 46899999999999643 678999999999753 4688999875 79999999999997 33222 4578999999
Q ss_pred EcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEe
Q 035970 79 AAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQV 117 (377)
Q Consensus 79 D~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~L 117 (377)
|++.+ ++++||++.|+|.++..... ...||+|
T Consensus 89 d~d~~~~~~~lG~~~i~l~~l~~~~~-------~~~W~~L 121 (122)
T cd08381 89 SHDSLVENEFLGGVCIPLKKLDLSQE-------TEKWYPL 121 (122)
T ss_pred eCCCCcCCcEEEEEEEeccccccCCC-------ccceEEC
Confidence 99865 69999999999999875432 2468875
No 34
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.68 E-value=3.5e-16 Score=134.34 Aligned_cols=105 Identities=18% Similarity=0.337 Sum_probs=85.1
Q ss_pred CCCeEEEEEEEEeecCCCC---CCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEE
Q 035970 3 PPPRVLEISIVSGHDLALV---SKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMI 75 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~~---~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~V 75 (377)
+..+.|.|+|++|+||... .+.+||||++++.|. .+.+|++.++ +.||+|||+|.|.+....+ ....|.|
T Consensus 12 ~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~-t~nP~wnE~f~f~i~~~~l--~~~~L~~ 88 (125)
T cd04029 12 YKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRN-TTNPVYNETLKYSISHSQL--ETRTLQL 88 (125)
T ss_pred CCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeC-CCCCcccceEEEECCHHHh--CCCEEEE
Confidence 4567899999999999643 378999999999653 3678998765 7999999999999976544 3568999
Q ss_pred EEEEcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEe
Q 035970 76 EIYAAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQV 117 (377)
Q Consensus 76 eVyD~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~L 117 (377)
+|||++.+ ++++||++.|+|.++..... ...||+|
T Consensus 89 ~V~d~~~~~~~~~lG~~~i~l~~~~~~~~-------~~~w~~l 124 (125)
T cd04029 89 SVWHYDRFGRNTFLGEVEIPLDSWNFDSQ-------HEECLPL 124 (125)
T ss_pred EEEECCCCCCCcEEEEEEEeCCcccccCC-------cccEEEC
Confidence 99999865 68999999999999876532 2468876
No 35
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.68 E-value=3.7e-16 Score=135.23 Aligned_cols=107 Identities=22% Similarity=0.347 Sum_probs=85.6
Q ss_pred CCeEEEEEEEEeecCCCC--C-CCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEE
Q 035970 4 PPRVLEISIVSGHDLALV--S-KSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIE 76 (377)
Q Consensus 4 p~g~LeVtVISAkdL~~~--~-g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~Ve 76 (377)
..+.|.|+|++|+||... . +.+||||++++.|. .+.+|++.++ +.||+|||+|.|.+....| ....|.|.
T Consensus 13 ~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~-t~nPvfNE~F~f~v~~~~l--~~~~L~v~ 89 (128)
T cd08392 13 RTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKG-TVNPVFNETLKYVVEADLL--SSRQLQVS 89 (128)
T ss_pred CCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccC-CCCCccceEEEEEcCHHHh--CCcEEEEE
Confidence 457899999999999643 3 78999999999754 3678998865 8999999999999976544 45789999
Q ss_pred EEEcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEe
Q 035970 77 IYAAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQV 117 (377)
Q Consensus 77 VyD~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~L 117 (377)
|||.+.+ ++++||++.|+|.++..... ......||+|
T Consensus 90 V~~~~~~~~~~~lG~~~i~L~~~~~~~~----~~~~~~W~~l 127 (128)
T cd08392 90 VWHSRTLKRRVFLGEVLIPLADWDFEDT----DSQRFLWYPL 127 (128)
T ss_pred EEeCCCCcCcceEEEEEEEcCCcccCCC----CccccceEEC
Confidence 9999864 68999999999999854321 1234578876
No 36
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.68 E-value=5.2e-16 Score=129.61 Aligned_cols=108 Identities=20% Similarity=0.261 Sum_probs=86.5
Q ss_pred CeEEEEEEEEeecCCCCCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC-
Q 035970 5 PRVLEISIVSGHDLALVSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL- 83 (377)
Q Consensus 5 ~g~LeVtVISAkdL~~~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~- 83 (377)
.-.|+|+|++|++|. .+.+||||++++++ ++.+|++.++ +.||.|||+|.|.+..+........|.|+|||++.+
T Consensus 3 ~~~l~V~v~~a~~L~--~~~~dpyv~v~~~~-~~~kT~~~~~-t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~ 78 (111)
T cd04011 3 DFQVRVRVIEARQLV--GGNIDPVVKVEVGG-QKKYTSVKKG-TNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLR 78 (111)
T ss_pred cEEEEEEEEEcccCC--CCCCCCEEEEEECC-EeeeeeEEec-cCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccc
Confidence 457999999999998 67899999999984 6778998764 789999999999976432101246899999999865
Q ss_pred CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCC
Q 035970 84 KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRP 120 (377)
Q Consensus 84 ~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~ 120 (377)
+|++||++.|+|+++..... ..+...||+|.+|
T Consensus 79 ~~~~iG~~~i~l~~v~~~~~----~~~~~~w~~L~~~ 111 (111)
T cd04011 79 SDTLIGSFKLDVGTVYDQPD----HAFLRKWLLLTDP 111 (111)
T ss_pred cCCccEEEEECCccccCCCC----CcceEEEEEeeCc
Confidence 68999999999999977643 2445679998764
No 37
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.67 E-value=5.4e-16 Score=128.45 Aligned_cols=100 Identities=23% Similarity=0.322 Sum_probs=83.3
Q ss_pred EEEEEEEEeecCCCC--CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcCC
Q 035970 7 VLEISIVSGHDLALV--SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWLK 84 (377)
Q Consensus 7 ~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~~ 84 (377)
.|.|+|++|++|+.. .+.+||||++.+++ ++++|++.++ +.||.|||+|.|.+..+. ...|.|+|||++.
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~-~~~kT~v~~~-t~nP~Wne~f~f~v~~~~----~~~l~v~v~d~~~-- 72 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGK-TTQKSKVKER-TNNPVWEEGFTFLVRNPE----NQELEIEVKDDKT-- 72 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECC-EEEeCccccC-CCCCcccceEEEEeCCCC----CCEEEEEEEECCC--
Confidence 489999999999754 57899999999985 7889998765 799999999999998742 4689999999886
Q ss_pred CceeEEEEEEcccccCCcccCCCCCceeEEEEeeC
Q 035970 85 DALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRR 119 (377)
Q Consensus 85 DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr 119 (377)
|++||++.|+|.++.... ......||+|..
T Consensus 73 ~~~iG~~~i~l~~l~~~~-----~~~~~~w~~L~~ 102 (105)
T cd04050 73 GKSLGSLTLPLSELLKEP-----DLTLDQPFPLDN 102 (105)
T ss_pred CCccEEEEEEHHHhhccc-----cceeeeeEecCC
Confidence 899999999999987653 122457998864
No 38
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.67 E-value=1.8e-15 Score=127.66 Aligned_cols=115 Identities=24% Similarity=0.338 Sum_probs=93.4
Q ss_pred eEEEEEEEEeecCCCC----CCCCCeEEEEEECC-----CCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEE
Q 035970 6 RVLEISIVSGHDLALV----SKSMKTYSVAWVDP-----ERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIE 76 (377)
Q Consensus 6 g~LeVtVISAkdL~~~----~g~~DPYVvV~L~p-----~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~Ve 76 (377)
-.|+|+|++|++|+.. .+..||||++++.+ ..+.+|+++.+++.||.|||+|.|.+..+ ....|.|+
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~----~~~~l~~~ 77 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVP----ELAFLRFV 77 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCC----CeEEEEEE
Confidence 4699999999999753 46889999999942 35688998776555999999999998854 23679999
Q ss_pred EEEcCcCCCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCC--CcceEEEEEEEE
Q 035970 77 IYAAAWLKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSG--RPQGILNLGITL 134 (377)
Q Consensus 77 VyD~d~~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sG--k~~G~L~LsV~f 134 (377)
|||++..+|++||++.++|.++..+ ..+++|+++.+ ...|.|.+.+++
T Consensus 78 V~d~~~~~~~~iG~~~~~l~~l~~g----------~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 78 VYDEDSGDDDFLGQACLPLDSLRQG----------YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred EEeCCCCCCcEeEEEEEEhHHhcCc----------eEEEEecCCCCCCCcceeEEEEEEE
Confidence 9999866999999999999998554 25789998877 457888888875
No 39
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.67 E-value=1.2e-15 Score=127.26 Aligned_cols=111 Identities=24% Similarity=0.378 Sum_probs=92.0
Q ss_pred EEEEEEEeecCCCC--CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC-C
Q 035970 8 LEISIVSGHDLALV--SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL-K 84 (377)
Q Consensus 8 LeVtVISAkdL~~~--~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~-~ 84 (377)
|+|+|++|++|... .+.+||||++.+++....+|+++.+ +.||.|||+|.|.+... ....|.|+|||++.. .
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~-~~~P~Wne~f~~~~~~~----~~~~l~~~v~d~~~~~~ 75 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKK-TLNPVWNESFEVPVPSR----VRAVLKVEVYDWDRGGK 75 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecC-CCCCcccccEEEEeccC----CCCEEEEEEEeCCCCCC
Confidence 68999999999754 4689999999998666689998765 89999999999999753 357899999999865 6
Q ss_pred CceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcceEEEE
Q 035970 85 DALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQGILNL 130 (377)
Q Consensus 85 DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~G~L~L 130 (377)
|++||++.+++.++..... ...|++|...++...|.|.+
T Consensus 76 ~~~iG~~~~~l~~l~~~~~-------~~~~~~L~~~g~~~~~~~~~ 114 (115)
T cd04040 76 DDLLGSAYIDLSDLEPEET-------TELTLPLDGQGGGKLGAVFL 114 (115)
T ss_pred CCceEEEEEEHHHcCCCCc-------EEEEEECcCCCCccCceEEc
Confidence 8999999999999876422 35799998777888888764
No 40
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.66 E-value=2.2e-15 Score=130.42 Aligned_cols=124 Identities=15% Similarity=0.235 Sum_probs=94.2
Q ss_pred EEEEEEEEeecCCC--CCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccC-----CCCCCCceEEEEEEE
Q 035970 7 VLEISIVSGHDLAL--VSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDR-----FLTDETSAIMIEIYA 79 (377)
Q Consensus 7 ~LeVtVISAkdL~~--~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~-----~L~~~~s~L~VeVyD 79 (377)
.|+|+|++|++|.. ..+.+||||+|.+. ..+.+|++.++ +.||.|||.|.|.+... .+......|.|+|||
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~-~~~~kT~v~~~-t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d 79 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFL-NQSQETEVIKE-TLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFD 79 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEEC-CeeeEeeeEcC-CCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEe
Confidence 58999999999964 46789999999997 46788999865 79999999999985321 011123578999999
Q ss_pred cCcC-CCceeEEEEE-EcccccCCcccCCCCCceeEEEEeeCCCCCcceEEEEEEEEEec
Q 035970 80 AAWL-KDALIGSVRV-LISHLFGTLTHNSSSSTRYVALQVRRPSGRPQGILNLGITLLDN 137 (377)
Q Consensus 80 ~d~~-~DdlIG~a~I-pLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~G~L~LsV~f~p~ 137 (377)
++.. .|++||++.+ |+..+.... .......|+.|. +.+..+|+|.|++.+++.
T Consensus 80 ~d~~~~d~~iG~~~i~~~~~~~~~~----~~~~~~~W~~L~-~~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 80 QDSVGKDEFLGRSVAKPLVKLDLEE----DFPPKLQWFPIY-KGGQSAGELLAAFELIEV 134 (135)
T ss_pred CcCCCCCccceEEEeeeeeecccCC----CCCCCceEEEee-cCCCchhheeEEeEEEEe
Confidence 9865 6899999986 554443321 123356899997 446789999999999875
No 41
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.66 E-value=8.9e-16 Score=130.18 Aligned_cols=106 Identities=17% Similarity=0.306 Sum_probs=86.6
Q ss_pred CCCeEEEEEEEEeecCCC--CCCCCCeEEEEEECC--CCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEE
Q 035970 3 PPPRVLEISIVSGHDLAL--VSKSMKTYSVAWVDP--ERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIY 78 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~--~~g~~DPYVvV~L~p--~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVy 78 (377)
++.+.|.|+|++|++|.. ..+.+||||++.+.+ ....+|++.++ +.||.|||+|.|.+....+ ....|.|+||
T Consensus 13 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~-t~~P~wne~f~f~v~~~~l--~~~~l~i~V~ 89 (124)
T cd08387 13 KDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKK-TLNPEFDESFVFEVPPQEL--PKRTLEVLLY 89 (124)
T ss_pred CCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcC-CCCCCcccEEEEeCCHHHh--CCCEEEEEEE
Confidence 456899999999999974 357899999999953 45688998875 7999999999999876433 3468999999
Q ss_pred EcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEee
Q 035970 79 AAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVR 118 (377)
Q Consensus 79 D~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lr 118 (377)
|++.+ +|++||.+.|+|+++..... ...||.|.
T Consensus 90 d~~~~~~~~~iG~~~i~l~~~~~~~~-------~~~W~~l~ 123 (124)
T cd08387 90 DFDQFSRDECIGVVELPLAEVDLSEK-------LDLWRKIQ 123 (124)
T ss_pred ECCCCCCCceeEEEEEecccccCCCC-------cceEEECc
Confidence 99865 69999999999999976532 24788875
No 42
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.66 E-value=7.6e-16 Score=129.50 Aligned_cols=93 Identities=17% Similarity=0.230 Sum_probs=78.2
Q ss_pred eEEEEEEEEeecCCCCC------CCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEE
Q 035970 6 RVLEISIVSGHDLALVS------KSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYA 79 (377)
Q Consensus 6 g~LeVtVISAkdL~~~~------g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD 79 (377)
++|.|+|++|++|+... +.+||||+|.++ ..+++|+++++ +.||+|||.|.|.+.... ....|.|+|||
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~-~~~~kT~v~~~-t~nPvWne~f~f~v~~~~---~~~~L~~~V~D 75 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFG-RRVFRTSWRRH-TLNPVFNERLAFEVYPHE---KNFDIQFKVLD 75 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEEC-CEeEeeeeecC-CCCCcccceEEEEEeCcc---CCCEEEEEEEE
Confidence 58999999999997531 358999999997 46789999876 799999999999987542 24589999999
Q ss_pred cCcC-CCceeEEEEEEcccccCCcc
Q 035970 80 AAWL-KDALIGSVRVLISHLFGTLT 103 (377)
Q Consensus 80 ~d~~-~DdlIG~a~IpLs~L~~~~~ 103 (377)
++.+ .|++||++.++|.+|.....
T Consensus 76 ~d~~~~dd~IG~~~l~L~~l~~~~~ 100 (108)
T cd04039 76 KDKFSFNDYVATGSLSVQELLNAAP 100 (108)
T ss_pred CCCCCCCcceEEEEEEHHHHHhhCC
Confidence 9965 69999999999999987654
No 43
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.66 E-value=6.2e-16 Score=132.55 Aligned_cols=104 Identities=21% Similarity=0.338 Sum_probs=83.8
Q ss_pred CCeEEEEEEEEeecCCCC--C-CCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEE
Q 035970 4 PPRVLEISIVSGHDLALV--S-KSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIE 76 (377)
Q Consensus 4 p~g~LeVtVISAkdL~~~--~-g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~Ve 76 (377)
..+.|.|+|++|+||+.. . +.+||||++++.|. .+.+|+|+++ +.||+|||+|.|.+....+ ....|.|+
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~-t~nP~~nE~f~f~v~~~~l--~~~~L~~~ 89 (125)
T cd08393 13 KLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKK-TLNPVFNETLRYKVEREEL--PTRVLNLS 89 (125)
T ss_pred CCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcC-CCCCccCceEEEECCHHHh--CCCEEEEE
Confidence 346899999999999754 3 68999999999643 3578999875 7999999999999976544 45689999
Q ss_pred EEEcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEe
Q 035970 77 IYAAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQV 117 (377)
Q Consensus 77 VyD~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~L 117 (377)
|||++.+ ++++||++.|+|.++..... ...||+|
T Consensus 90 V~d~~~~~~~~~iG~~~i~L~~~~~~~~-------~~~W~~L 124 (125)
T cd08393 90 VWHRDSLGRNSFLGEVEVDLGSWDWSNT-------QPTWYPL 124 (125)
T ss_pred EEeCCCCCCCcEeEEEEEecCccccCCC-------CcceEEC
Confidence 9999865 68999999999999855422 2468876
No 44
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.65 E-value=1.3e-15 Score=129.21 Aligned_cols=95 Identities=22% Similarity=0.387 Sum_probs=78.8
Q ss_pred eEEEEEEEEeecCCCC--CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC
Q 035970 6 RVLEISIVSGHDLALV--SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL 83 (377)
Q Consensus 6 g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~ 83 (377)
+.|+|+|++|++|+.. .+.+||||+++++. ..++|++.++++.||.|||+|.|.+..... .....|.|+|||.+.+
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~-~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~-~~~~~l~v~V~d~~~~ 78 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRT-QERKSKVAKGDGRNPEWNEKFKFTVEYPGW-GGDTKLILRIMDKDNF 78 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECC-EeeeeeEcCCCCCCCcccceEEEEecCccc-CCCCEEEEEEEECccC
Confidence 5799999999999753 47899999999974 567888876557999999999999987521 1246899999999865
Q ss_pred -CCceeEEEEEEcccccCCc
Q 035970 84 -KDALIGSVRVLISHLFGTL 102 (377)
Q Consensus 84 -~DdlIG~a~IpLs~L~~~~ 102 (377)
+|++||.+.|+|.++....
T Consensus 79 ~~d~~iG~~~i~l~~l~~~~ 98 (124)
T cd04049 79 SDDDFIGEATIHLKGLFEEG 98 (124)
T ss_pred CCCCeEEEEEEEhHHhhhCC
Confidence 6899999999999997654
No 45
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.65 E-value=2.3e-15 Score=129.04 Aligned_cols=110 Identities=22% Similarity=0.352 Sum_probs=89.1
Q ss_pred EEEEEEEEeecCCCC--CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCc--
Q 035970 7 VLEISIVSGHDLALV--SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAW-- 82 (377)
Q Consensus 7 ~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~-- 82 (377)
.|+|+|++|++|+.. .+.+||||+|.++. .+.+|+++++ +.||.|||+|.|.+... ...|.|+|||++.
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~~v~~-t~~P~Wne~f~f~~~~~-----~~~l~i~v~d~d~~~ 74 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGK-TKKRTKTIPQ-NLNPVWNEKFHFECHNS-----SDRIKVRVWDEDDDI 74 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECC-EeeecceecC-CCCCccceEEEEEecCC-----CCEEEEEEEECCCCc
Confidence 589999999999743 57899999999974 5778998765 79999999999998643 4689999999874
Q ss_pred ----------CCCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCC--CcceEEEEEE
Q 035970 83 ----------LKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSG--RPQGILNLGI 132 (377)
Q Consensus 83 ----------~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sG--k~~G~L~LsV 132 (377)
..|++||.+.+++.++... ...||.|...++ ..+|+|.|++
T Consensus 75 ~~~~~~~~~~~~~~~iG~~~i~l~~~~~~---------~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 75 KSRLKQKFTRESDDFLGQTIIEVRTLSGE---------MDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred ccccceeccccCCCcceEEEEEhHHccCC---------CCeEEECccCCCCCcEeEEEEEEC
Confidence 2589999999999987432 137999986443 5899999864
No 46
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.65 E-value=1.5e-15 Score=135.07 Aligned_cols=103 Identities=14% Similarity=0.226 Sum_probs=83.8
Q ss_pred CeEEEEEEEEeecCCCC---CCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEE
Q 035970 5 PRVLEISIVSGHDLALV---SKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEI 77 (377)
Q Consensus 5 ~g~LeVtVISAkdL~~~---~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeV 77 (377)
.+.|+|+|++|+||... .+.+||||++++.+. .+.+|+++++ +.||+|||+|.|.+.. ....|.|+|
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kk-tlnPvfNE~F~f~v~l-----~~~~L~v~V 101 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARK-TLDPLYQQQLVFDVSP-----TGKTLQVIV 101 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCC-CCCCccCCeEEEEEcC-----CCCEEEEEE
Confidence 46899999999999643 468999999999653 3789999865 8999999999999982 367899999
Q ss_pred E-EcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCC
Q 035970 78 Y-AAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRP 120 (377)
Q Consensus 78 y-D~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~ 120 (377)
| |++.+ +++|||++.|+|+.+..... ...||+|...
T Consensus 102 ~~d~~~~~~~~~iG~~~i~L~~l~~~~~-------~~~Wy~L~~~ 139 (146)
T cd04028 102 WGDYGRMDKKVFMGVAQILLDDLDLSNL-------VIGWYKLFPT 139 (146)
T ss_pred EeCCCCCCCCceEEEEEEEcccccCCCC-------ceeEEecCCc
Confidence 9 56654 68999999999999854422 2479999854
No 47
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.65 E-value=1.1e-15 Score=128.02 Aligned_cols=94 Identities=20% Similarity=0.304 Sum_probs=77.5
Q ss_pred eEEEEEEEEeecCCC--CC-CCCCeEEEEEECC--CCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEc
Q 035970 6 RVLEISIVSGHDLAL--VS-KSMKTYSVAWVDP--ERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAA 80 (377)
Q Consensus 6 g~LeVtVISAkdL~~--~~-g~~DPYVvV~L~p--~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~ 80 (377)
++|+|+|++|++|.. .. +.+||||+|++.+ ....+|+++++ +.||+|||+|.|.+....+ .....|.|+|||+
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~-~~~~~l~~~V~d~ 78 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRK-DLNPVWEETWFVLVTPDEV-KAGERLSCRLWDS 78 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECC-CCCCccceeEEEEeCchhc-cCCCEEEEEEEeC
Confidence 589999999999974 34 7899999999954 34679999876 7999999999998875322 1246899999999
Q ss_pred CcC-CCceeEEEEEEcccccCC
Q 035970 81 AWL-KDALIGSVRVLISHLFGT 101 (377)
Q Consensus 81 d~~-~DdlIG~a~IpLs~L~~~ 101 (377)
+.+ .|++||++.++|.++...
T Consensus 79 d~~~~dd~lG~~~i~l~~l~~~ 100 (111)
T cd04041 79 DRFTADDRLGRVEIDLKELIED 100 (111)
T ss_pred CCCCCCCcceEEEEEHHHHhcC
Confidence 965 689999999999999754
No 48
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.65 E-value=1.6e-15 Score=128.59 Aligned_cols=104 Identities=18% Similarity=0.219 Sum_probs=84.1
Q ss_pred CCeEEEEEEEEeecCCCC--CCCCCeEEEEEECC----CCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEE
Q 035970 4 PPRVLEISIVSGHDLALV--SKSMKTYSVAWVDP----ERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEI 77 (377)
Q Consensus 4 p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p----~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeV 77 (377)
..+.|+|+|++|++|+.. .+.+||||++.+.+ ..+++|++.++ +.||+|||+|.|.+....+ ....|.|.|
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-~~nP~wne~f~f~i~~~~l--~~~~l~i~v 90 (127)
T cd04030 14 QRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKD-NLNPVFDETFEFPVSLEEL--KRRTLDVAV 90 (127)
T ss_pred CCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccC-CCCCEECeEEEEecCHHHh--cCCEEEEEE
Confidence 457899999999999754 47899999999964 35789999875 7899999999999875433 346899999
Q ss_pred EEcCcC---CCceeEEEEEEcccccCCcccCCCCCceeEEEEe
Q 035970 78 YAAAWL---KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQV 117 (377)
Q Consensus 78 yD~d~~---~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~L 117 (377)
||.+.+ .|++||.+.|+|.++..... ...||.|
T Consensus 91 ~~~~~~~~~~~~~iG~~~i~l~~l~~~~~-------~~~W~~L 126 (127)
T cd04030 91 KNSKSFLSREKKLLGQVLIDLSDLDLSKG-------FTQWYDL 126 (127)
T ss_pred EECCcccCCCCceEEEEEEecccccccCC-------ccceEEC
Confidence 999853 68999999999999855432 2468876
No 49
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.64 E-value=1.6e-15 Score=128.46 Aligned_cols=105 Identities=24% Similarity=0.374 Sum_probs=83.8
Q ss_pred CCeEEEEEEEEeecCCC--CCCCCCeEEEEEECCC--CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEE
Q 035970 4 PPRVLEISIVSGHDLAL--VSKSMKTYSVAWVDPE--RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYA 79 (377)
Q Consensus 4 p~g~LeVtVISAkdL~~--~~g~~DPYVvV~L~p~--~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD 79 (377)
..+.|+|+|++|++|.. ..+.+||||++.+.+. .+.+|++.++ +.||.|||+|.|.+....+ ....|.|+|||
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~l--~~~~l~~~V~d 90 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRK-TLNPVFNETFTFKVPYSEL--GNKTLVFSVYD 90 (124)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcC-CCCCceeeeEEEeCCHHHh--CCCEEEEEEEe
Confidence 45789999999999974 3578999999999653 4678998765 7999999999999875333 34689999999
Q ss_pred cCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEee
Q 035970 80 AAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVR 118 (377)
Q Consensus 80 ~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lr 118 (377)
++.+ .|++||++.|+|.++..+.. ...|+.|.
T Consensus 91 ~d~~~~~~~lG~~~i~l~~~~~~~~-------~~~W~~l~ 123 (124)
T cd08385 91 FDRFSKHDLIGEVRVPLLTVDLGHV-------TEEWRDLE 123 (124)
T ss_pred CCCCCCCceeEEEEEecCcccCCCC-------cceEEEcc
Confidence 9865 68999999999999855322 34688763
No 50
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.64 E-value=5.6e-15 Score=125.22 Aligned_cols=117 Identities=21% Similarity=0.256 Sum_probs=91.8
Q ss_pred EEEEEEEEeecCCCC--CCCCCeEEEEEECCC--CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCc
Q 035970 7 VLEISIVSGHDLALV--SKSMKTYSVAWVDPE--RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAW 82 (377)
Q Consensus 7 ~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~--~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~ 82 (377)
.|.|+|++|++|+.. .+.+||||++.+.+. ...+|++.++ +.||.|||+|.|.+... ....|.|+|||++.
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~-t~~P~Wne~f~f~i~~~----~~~~L~i~v~d~d~ 76 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYD-TLNPRWDEEFELEVPAG----EPLWISATVWDRSF 76 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecC-CCCCcccceEEEEcCCC----CCCEEEEEEEECCC
Confidence 689999999999753 578999999998643 4578998865 79999999999999863 24789999999986
Q ss_pred C-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcceEEEEEEEEEec
Q 035970 83 L-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQGILNLGITLLDN 137 (377)
Q Consensus 83 ~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~G~L~LsV~f~p~ 137 (377)
+ .+++||++.++|..+..... ......|+.|. ++|.|+|.+.+...
T Consensus 77 ~~~~~~iG~~~i~l~~~~~~~~----~~~~~~w~~l~-----~~g~i~l~~~~~~~ 123 (126)
T cd04043 77 VGKHDLCGRASLKLDPKRFGDD----GLPREIWLDLD-----TQGRLLLRVSMEGE 123 (126)
T ss_pred CCCCceEEEEEEecCHHHcCCC----CCCceEEEEcC-----CCCeEEEEEEEeee
Confidence 5 68999999999987643310 12245799885 26888888887543
No 51
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.64 E-value=1.1e-15 Score=131.96 Aligned_cols=96 Identities=15% Similarity=0.237 Sum_probs=81.2
Q ss_pred CCCeEEEEEEEEeecCCCC--CCCCCeEEEEEECCC-----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEE
Q 035970 3 PPPRVLEISIVSGHDLALV--SKSMKTYSVAWVDPE-----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMI 75 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~-----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~V 75 (377)
+..+.|.|+|++|+||... .+.+||||++++.|+ .+++|+|.++ +.||+|||+|.|+|....| ....|.|
T Consensus 11 ~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~-t~nPvfnE~F~f~v~~~~L--~~~~L~~ 87 (124)
T cd08680 11 SGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALED-QDKPVFNEVFRVPISSTKL--YQKTLQV 87 (124)
T ss_pred CCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCC-CCCCccccEEEEECCHHHh--hcCEEEE
Confidence 3467899999999999754 578999999999754 3688998875 8999999999999987655 5689999
Q ss_pred EEEEcCcC-CCceeEEEEEEcccccCC
Q 035970 76 EIYAAAWL-KDALIGSVRVLISHLFGT 101 (377)
Q Consensus 76 eVyD~d~~-~DdlIG~a~IpLs~L~~~ 101 (377)
.||+.+.+ ++++||.+.|+|.++...
T Consensus 88 ~V~~~~~~~~~~~lG~~~i~L~~~~~~ 114 (124)
T cd08680 88 DVCSVGPDQQEECLGGAQISLADFESS 114 (124)
T ss_pred EEEeCCCCCceeEEEEEEEEhhhccCC
Confidence 99999865 689999999999998443
No 52
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.64 E-value=4.5e-15 Score=133.30 Aligned_cols=124 Identities=19% Similarity=0.293 Sum_probs=96.4
Q ss_pred EEEEEEEEeecCCCC----CCCCCeEEEEEE----CCCCeEEeEeeCCCCCCCeeeeEEEEEeccCC--CC--CCCceEE
Q 035970 7 VLEISIVSGHDLALV----SKSMKTYSVAWV----DPERKLTTRVDQNGLNNPSWNEKFVFRVDDRF--LT--DETSAIM 74 (377)
Q Consensus 7 ~LeVtVISAkdL~~~----~g~~DPYVvV~L----~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~--L~--~~~s~L~ 74 (377)
.++|+|+.|.+++.+ .+.+||||++++ ...++.+|+|+++ +.||+|||+|.|.|+... ++ .....|.
T Consensus 3 ~~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~-TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~ 81 (155)
T cd08690 3 SIELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKD-TNSPEYNESFKLNINRKHRSFQRVFKRHGLK 81 (155)
T ss_pred ceEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccC-CCCCcccceEEEEeccccchhhhhccCCcEE
Confidence 467888888886422 467999999997 2346889999875 899999999999997541 00 1345799
Q ss_pred EEEEEcCcC--CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcceEEEEEEEEEecC
Q 035970 75 IEIYAAAWL--KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQGILNLGITLLDNT 138 (377)
Q Consensus 75 VeVyD~d~~--~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~G~L~LsV~f~p~s 138 (377)
|+|||++.+ .|++||++.|+|..+..... ...+++|.+......|.|++.|++..+.
T Consensus 82 ~~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~-------~~~~~~L~~~~k~~Gg~l~v~ir~r~p~ 140 (155)
T cd08690 82 FEVYHKGGFLRSDKLLGTAQVKLEPLETKCE-------IHESVDLMDGRKATGGKLEVKVRLREPL 140 (155)
T ss_pred EEEEeCCCcccCCCeeEEEEEEcccccccCc-------ceEEEEhhhCCCCcCCEEEEEEEecCCC
Confidence 999999853 69999999999999866532 2358898876667889999999997664
No 53
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.64 E-value=1e-15 Score=130.75 Aligned_cols=102 Identities=16% Similarity=0.272 Sum_probs=81.5
Q ss_pred CeEEEEEEEEeecCCCC-CCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEE
Q 035970 5 PRVLEISIVSGHDLALV-SKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYA 79 (377)
Q Consensus 5 ~g~LeVtVISAkdL~~~-~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD 79 (377)
.+.|+|+|++|+||... .+.+||||++++.|. .+.+|++.++ +.||+|||+|.|.+....+ ...|.|+||+
T Consensus 11 ~~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~-t~~P~~nE~F~f~v~~~~~---~~~l~v~V~~ 86 (119)
T cd08685 11 NRKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPD-SANPLFHETFSFDVNERDY---QKRLLVTVWN 86 (119)
T ss_pred CCEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccC-CCCCccccEEEEEcChHHh---CCEEEEEEEC
Confidence 57899999999999644 578999999999763 3668998865 7999999999999876433 3468899999
Q ss_pred cCcC--CCceeEEEEEEcccccCCcccCCCCCceeEEEEe
Q 035970 80 AAWL--KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQV 117 (377)
Q Consensus 80 ~d~~--~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~L 117 (377)
++.. ++++||.+.|+|.++..+.. ...||.|
T Consensus 87 ~~~~~~~~~~lG~~~i~l~~~~~~~~-------~~~Wy~l 119 (119)
T cd08685 87 KLSKSRDSGLLGCMSFGVKSIVNQKE-------ISGWYYL 119 (119)
T ss_pred CCCCcCCCEEEEEEEecHHHhccCcc-------ccceEeC
Confidence 8854 47899999999999975422 2468865
No 54
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.64 E-value=1.6e-15 Score=126.80 Aligned_cols=104 Identities=22% Similarity=0.302 Sum_probs=84.0
Q ss_pred EEEEEEEeecCCCC---CCCCCeEEEEEECCCCeEEeEeeCCCCCCCee-eeEEEEEeccCCCCCCCceEEEEEEEcCcC
Q 035970 8 LEISIVSGHDLALV---SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSW-NEKFVFRVDDRFLTDETSAIMIEIYAAAWL 83 (377)
Q Consensus 8 LeVtVISAkdL~~~---~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~W-NEtF~F~V~~~~L~~~~s~L~VeVyD~d~~ 83 (377)
|+|+|++|++|+.. .+.+||||++.+++ .+.+|+++++ +.||.| ||+|.|.+....+ ....|.|+|||++.+
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~-~~~kT~v~~~-~~nP~W~ne~f~f~i~~~~l--~~~~l~i~V~d~d~~ 76 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGS-TTYKTDVVKK-SLNPVWNSEWFRFEVDDEEL--QDEPLQIRVMDHDTY 76 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECC-eeEecceecC-CCCCcccCcEEEEEcChHHc--CCCeEEEEEEeCCCC
Confidence 68999999999743 46889999999985 7889999875 799999 9999999986433 246899999999975
Q ss_pred -CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeC
Q 035970 84 -KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRR 119 (377)
Q Consensus 84 -~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr 119 (377)
+|++||++.++|.++..... ......||+|.+
T Consensus 77 ~~~~~iG~~~~~l~~l~~~~~----~~~~~~w~~l~~ 109 (110)
T cd08688 77 SANDAIGKVYIDLNPLLLKDS----VSQISGWFPIYD 109 (110)
T ss_pred CCCCceEEEEEeHHHhcccCC----ccccCCeEEccc
Confidence 58999999999999977421 112346988864
No 55
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.63 E-value=5.2e-15 Score=123.26 Aligned_cols=113 Identities=19% Similarity=0.207 Sum_probs=85.3
Q ss_pred EEEEEEEeecCCCCCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC-CCc
Q 035970 8 LEISIVSGHDLALVSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL-KDA 86 (377)
Q Consensus 8 LeVtVISAkdL~~~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~-~Dd 86 (377)
|.|+|++|++|+.. +.+||||++++++....+|++..+ .||.|||+|.|.+....+ ....|.|.+||.+.. .+.
T Consensus 2 L~v~vi~a~~l~~~-~~~dpyv~v~~~~~~~~kT~~~~~--~~P~Wne~f~f~v~~~~~--~~~~l~i~v~d~~~~~~~~ 76 (117)
T cd08383 2 LRLRILEAKNLPSK-GTRDPYCTVSLDQVEVARTKTVEK--LNPFWGEEFVFDDPPPDV--TFFTLSFYNKDKRSKDRDI 76 (117)
T ss_pred eEEEEEEecCCCcC-CCCCceEEEEECCEEeEecceEEC--CCCcccceEEEecCCccc--cEEEEEEEEEecccCCCee
Confidence 78999999999876 889999999998645578998754 899999999999986432 235788888887754 355
Q ss_pred eeEEEEEEcccccCCcccCCCCCceeEEEEeeCCC--CCcceEEEEEEEE
Q 035970 87 LIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPS--GRPQGILNLGITL 134 (377)
Q Consensus 87 lIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~s--Gk~~G~L~LsV~f 134 (377)
++|. ++|..+..... ...||+|...+ +...|+|+|.++|
T Consensus 77 ~~g~--v~l~~~~~~~~-------~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 77 VIGK--VALSKLDLGQG-------KDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEE--EEecCcCCCCc-------ceeEEECccCCCCCCcCceEEEEEEC
Confidence 6665 55555443321 34799997543 4679999999976
No 56
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.63 E-value=2.6e-15 Score=126.37 Aligned_cols=105 Identities=20% Similarity=0.334 Sum_probs=83.6
Q ss_pred CCCeEEEEEEEEeecCCCC---CCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEE
Q 035970 3 PPPRVLEISIVSGHDLALV---SKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMI 75 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~~---~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~V 75 (377)
...+.|.|+|++|+||+.. .+.+||||++.+.+. .+.+|++.++ +.||+|||+|.|.+....+ ....|.|
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~~P~wne~f~f~i~~~~l--~~~~l~i 87 (123)
T cd08521 11 YKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKN-TTNPVFNETLKYHISKSQL--ETRTLQL 87 (123)
T ss_pred CCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCC-CCCCcccceEEEeCCHHHh--CCCEEEE
Confidence 3467899999999999743 468999999998543 4678998764 8999999999999886433 3468999
Q ss_pred EEEEcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEe
Q 035970 76 EIYAAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQV 117 (377)
Q Consensus 76 eVyD~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~L 117 (377)
+|||++.+ ++++||.+.++|.++..... ...||+|
T Consensus 88 ~v~d~~~~~~~~~iG~~~i~l~~l~~~~~-------~~~w~~l 123 (123)
T cd08521 88 SVWHHDRFGRNTFLGEVEIPLDSWDLDSQ-------QSEWYPL 123 (123)
T ss_pred EEEeCCCCcCCceeeEEEEecccccccCC-------CccEEEC
Confidence 99999854 68999999999999854322 2468875
No 57
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.63 E-value=1.3e-14 Score=124.33 Aligned_cols=118 Identities=21% Similarity=0.288 Sum_probs=92.8
Q ss_pred eEEEEEEEEeecCCC-CCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC-
Q 035970 6 RVLEISIVSGHDLAL-VSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL- 83 (377)
Q Consensus 6 g~LeVtVISAkdL~~-~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~- 83 (377)
..|+|+|++|+.+.. ..+.+||||+++++.....+|++..+ +.||.|||+|.|.+.. ...|.|+|||++..
T Consensus 2 ~~L~V~i~~a~l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~-t~~P~Wne~f~~~~~~------~~~l~~~V~d~~~~~ 74 (125)
T cd04021 2 SQLQITVESAKLKSNSKSFKPDPYVEVTVDGQPPKKTEVSKK-TSNPKWNEHFTVLVTP------QSTLEFKVWSHHTLK 74 (125)
T ss_pred ceEEEEEEeeECCCCCcCCCCCeEEEEEECCcccEEeeeeCC-CCCCccccEEEEEeCC------CCEEEEEEEeCCCCC
Confidence 479999999994432 25789999999998544789998764 7999999999999864 46899999999865
Q ss_pred CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCC---CCcceEEEEEE
Q 035970 84 KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPS---GRPQGILNLGI 132 (377)
Q Consensus 84 ~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~s---Gk~~G~L~LsV 132 (377)
.|++||++.++|.++...... .......|+++.+++ +...|.|.+.+
T Consensus 75 ~~~~iG~~~i~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 75 ADVLLGEASLDLSDILKNHNG--KLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred CCcEEEEEEEEHHHhHhhcCC--CccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 689999999999998765321 112134688888654 47899998875
No 58
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.61 E-value=7.9e-15 Score=126.45 Aligned_cols=107 Identities=21% Similarity=0.305 Sum_probs=82.3
Q ss_pred CCeEEEEEEEEeecCCCC--C-CCCCeEEEEEECCC--CeEEeEeeCCCCCCCeeeeEEEE-EeccCCCCCCCceEEEEE
Q 035970 4 PPRVLEISIVSGHDLALV--S-KSMKTYSVAWVDPE--RKLTTRVDQNGLNNPSWNEKFVF-RVDDRFLTDETSAIMIEI 77 (377)
Q Consensus 4 p~g~LeVtVISAkdL~~~--~-g~~DPYVvV~L~p~--~k~rTrV~k~gg~NP~WNEtF~F-~V~~~~L~~~~s~L~VeV 77 (377)
....|.|+|++|++|+.. . +.+||||++.+.+. ++.+|+++++ +.||+|||+|.| .++...+ ....|.|+|
T Consensus 14 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~-t~nP~wnE~F~f~~~~~~~~--~~~~L~~~V 90 (128)
T cd08388 14 EKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRK-TRNPVYDETFTFYGIPYNQL--QDLSLHFAV 90 (128)
T ss_pred CCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcC-CCCCceeeEEEEcccCHHHh--CCCEEEEEE
Confidence 457899999999999753 3 78999999999643 4678999875 799999999999 4554322 345799999
Q ss_pred EEcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEee
Q 035970 78 YAAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVR 118 (377)
Q Consensus 78 yD~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lr 118 (377)
||++.+ +|++||++.|+|.++..... .. ..+|++|.
T Consensus 91 ~d~d~~~~d~~lG~~~i~L~~l~~~~~----~~-~~~~~~~~ 127 (128)
T cd08388 91 LSFDRYSRDDVIGEVVCPLAGADLLNE----GE-LLVSREIQ 127 (128)
T ss_pred EEcCCCCCCceeEEEEEeccccCCCCC----ce-EEEEEecc
Confidence 999855 69999999999999865421 11 34677653
No 59
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.61 E-value=9.7e-15 Score=124.59 Aligned_cols=102 Identities=24% Similarity=0.248 Sum_probs=84.5
Q ss_pred eEEEEEEEEeecCCCC--CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC
Q 035970 6 RVLEISIVSGHDLALV--SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL 83 (377)
Q Consensus 6 g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~ 83 (377)
+.|+|+|++|++|++. .+.+||||+|+++...+.+|++..+ +.||.|||.|.|.+... ...|.|+|||++.+
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~-t~~P~Wne~f~~~v~~~-----~~~L~v~v~d~~~~ 74 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISN-TLNPVWDEVLYVPVTSP-----NQKITLEVMDYEKV 74 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECC-CcCCccCceEEEEecCC-----CCEEEEEEEECCCC
Confidence 5799999999999764 5799999999997555688888764 79999999999998753 46899999999865
Q ss_pred -CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCC
Q 035970 84 -KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPS 121 (377)
Q Consensus 84 -~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~s 121 (377)
.|++||++.++|.++..... ..||.|.+.+
T Consensus 75 ~~d~~IG~~~~~l~~l~~~~~--------~~~~~~~~~~ 105 (120)
T cd04045 75 GKDRSLGSVEINVSDLIKKNE--------DGKYVEYDDE 105 (120)
T ss_pred CCCCeeeEEEEeHHHhhCCCC--------CceEEecCCC
Confidence 58899999999999987621 3588877654
No 60
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.60 E-value=5.8e-15 Score=123.77 Aligned_cols=102 Identities=23% Similarity=0.343 Sum_probs=83.8
Q ss_pred CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcCCCceeEEEEEEcccccCC
Q 035970 22 SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWLKDALIGSVRVLISHLFGT 101 (377)
Q Consensus 22 ~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~~DdlIG~a~IpLs~L~~~ 101 (377)
+|.+||||+|.++.....+|+++.+ +.||.|||.|.|.+.+. ....|.|+|||++.++|++||.+.|+|.++...
T Consensus 10 ~G~~dPYv~v~v~~~~~~kT~v~~~-t~nP~Wne~f~f~v~~~----~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~ 84 (111)
T cd04052 10 TGLLSPYAELYLNGKLVYTTRVKKK-TNNPSWNASTEFLVTDR----RKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDA 84 (111)
T ss_pred CCCCCceEEEEECCEEEEEEeeecc-CCCCccCCceEEEecCc----CCCEEEEEEEECCCCCCCeEEEEEecHHHHHhh
Confidence 5789999999998655678998765 79999999999999764 257899999999966999999999999998654
Q ss_pred cccCCCCCceeEEEEeeCCCCCcceEEEEEEEEEec
Q 035970 102 LTHNSSSSTRYVALQVRRPSGRPQGILNLGITLLDN 137 (377)
Q Consensus 102 ~~~~~~~~~~~v~y~Lrr~sGk~~G~L~LsV~f~p~ 137 (377)
.. ....||+|.. ..+|+|+|.+.|.|.
T Consensus 85 ~~------~~~~w~~L~~---~~~G~i~~~~~~~p~ 111 (111)
T cd04052 85 TS------VGQQWFPLSG---NGQGRIRISALWKPV 111 (111)
T ss_pred hh------ccceeEECCC---CCCCEEEEEEEEecC
Confidence 22 1247998864 578999999999873
No 61
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.60 E-value=6.7e-15 Score=124.19 Aligned_cols=103 Identities=15% Similarity=0.245 Sum_probs=80.5
Q ss_pred CCeEEEEEEEEeecCCCC--CCCCCeEEEEEECC----CCeEEeEeeCCCCCCCeeeeEEEEEecc-CCCCCCCceEEEE
Q 035970 4 PPRVLEISIVSGHDLALV--SKSMKTYSVAWVDP----ERKLTTRVDQNGLNNPSWNEKFVFRVDD-RFLTDETSAIMIE 76 (377)
Q Consensus 4 p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p----~~k~rTrV~k~gg~NP~WNEtF~F~V~~-~~L~~~~s~L~Ve 76 (377)
..+.|.|+|++|++|... .+.+||||+|++.+ ..+.+|+++++ +.||+|||+|.|.+.. ..+ ....|.|+
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~l--~~~~l~~~ 90 (125)
T cd04031 14 VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKK-TLNPEWNQTFEYSNVRRETL--KERTLEVT 90 (125)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCC-CCCCccccEEEEcccCHHHh--CCCEEEEE
Confidence 357899999999999653 57899999999975 25678998765 7999999999998543 222 34689999
Q ss_pred EEEcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEe
Q 035970 77 IYAAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQV 117 (377)
Q Consensus 77 VyD~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~L 117 (377)
|||++.+ .|++||++.++|.+..... ...||+|
T Consensus 91 V~d~~~~~~~~~iG~~~i~l~~~~~~~--------~~~W~~L 124 (125)
T cd04031 91 VWDYDRDGENDFLGEVVIDLADALLDD--------EPHWYPL 124 (125)
T ss_pred EEeCCCCCCCcEeeEEEEecccccccC--------CcceEEC
Confidence 9999865 6899999999999832221 1368876
No 62
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.60 E-value=6.6e-15 Score=126.16 Aligned_cols=105 Identities=26% Similarity=0.391 Sum_probs=84.1
Q ss_pred CCCeEEEEEEEEeecCCCC--CCCCCeEEEEEECCC--CeEEeEeeCCCCCCCeeeeEEEEE-eccCCCCCCCceEEEEE
Q 035970 3 PPPRVLEISIVSGHDLALV--SKSMKTYSVAWVDPE--RKLTTRVDQNGLNNPSWNEKFVFR-VDDRFLTDETSAIMIEI 77 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~--~k~rTrV~k~gg~NP~WNEtF~F~-V~~~~L~~~~s~L~VeV 77 (377)
+..+.|.|+|++|+||... .+..||||++.+.+. ++.+|+|.+ + .||+|||+|.|+ ++...+ ....|.|.|
T Consensus 13 ~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~-~-~nP~fnE~F~f~~i~~~~l--~~~~L~~~V 88 (124)
T cd08389 13 PSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQR-G-PNPVFNETFTFSRVEPEEL--NNMALRFRL 88 (124)
T ss_pred CCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeeccccc-C-CCCcccCEEEECCCCHHHh--ccCEEEEEE
Confidence 3457899999999999754 578899999988653 577899875 4 899999999998 765444 467899999
Q ss_pred EEcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEee
Q 035970 78 YAAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVR 118 (377)
Q Consensus 78 yD~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lr 118 (377)
||++.+ ++++||++.|+|+++..... ...||+|.
T Consensus 89 ~~~~~~~~~~~lG~~~i~L~~l~~~~~-------~~~w~~L~ 123 (124)
T cd08389 89 YGVERMRKERLIGEKVVPLSQLNLEGE-------TTVWLTLE 123 (124)
T ss_pred EECCCcccCceEEEEEEeccccCCCCC-------ceEEEeCC
Confidence 999865 69999999999999955422 35788774
No 63
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.60 E-value=2.7e-14 Score=125.51 Aligned_cols=115 Identities=18% Similarity=0.274 Sum_probs=90.7
Q ss_pred EEEEEEEEeecCC-CCCCCCCeEEEEEECCC------------CeEEeEeeCCCCCCCee-eeEEEEEeccCCCCCCCce
Q 035970 7 VLEISIVSGHDLA-LVSKSMKTYSVAWVDPE------------RKLTTRVDQNGLNNPSW-NEKFVFRVDDRFLTDETSA 72 (377)
Q Consensus 7 ~LeVtVISAkdL~-~~~g~~DPYVvV~L~p~------------~k~rTrV~k~gg~NP~W-NEtF~F~V~~~~L~~~~s~ 72 (377)
+..|++++|++|+ +..+.+||||++.+.+. ++++|+++++ +.||+| ||+|.|.+.. ...
T Consensus 2 ~~~~~~~~A~~L~~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~-tlnP~W~nE~f~f~v~~------~~~ 74 (137)
T cd08691 2 SFSLSGLQARNLKKGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVEN-TINPVWHREQFVFVGLP------TDV 74 (137)
T ss_pred EEEEEEEEeCCCCCccCCCCCceEEEEEECCCcccccccccccceeeeeeEcC-CCCCceEceEEEEEcCC------CCE
Confidence 4578999999996 34589999999999642 3689999865 799999 9999999964 368
Q ss_pred EEEEEEEcCcC----CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCC--CCCcceEEEEEE
Q 035970 73 IMIEIYAAAWL----KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRP--SGRPQGILNLGI 132 (377)
Q Consensus 73 L~VeVyD~d~~----~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~--sGk~~G~L~LsV 132 (377)
|.|+|||++.. .|++||.+.|+|.++..... ......+|+|.+. .+..+|+|.|.+
T Consensus 75 L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~----~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 75 LEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHA----IGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEEEEEecCCCCCccCCceEEEEEEEHHHhccccc----CCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 99999997632 37999999999999987642 1224578888754 347899998865
No 64
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.60 E-value=1.4e-14 Score=129.44 Aligned_cols=109 Identities=21% Similarity=0.228 Sum_probs=83.8
Q ss_pred EEEEEEEEeecCCCC--C--------------CCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCC
Q 035970 7 VLEISIVSGHDLALV--S--------------KSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDET 70 (377)
Q Consensus 7 ~LeVtVISAkdL~~~--~--------------g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~ 70 (377)
.|+|+|++|++|+.. . +.+||||+|.+++ .+.+|+++++ +.||+|||+|.|++..+.+ .
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g-~~~kT~v~~~-t~nPvWNE~f~f~v~~p~~---~ 75 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAG-QKVKTSVKKN-SYNPEWNEQIVFPEMFPPL---C 75 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECC-EeeecceEcC-CCCCCcceEEEEEeeCCCc---C
Confidence 389999999999753 1 3689999999985 5678999875 7999999999999765432 4
Q ss_pred ceEEEEEEEcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCC
Q 035970 71 SAIMIEIYAAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRP 120 (377)
Q Consensus 71 s~L~VeVyD~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~ 120 (377)
..|.|+|||++.. +|++||++.|+|.++........-......||.+..+
T Consensus 76 ~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~ 126 (151)
T cd04018 76 ERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGS 126 (151)
T ss_pred CEEEEEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecC
Confidence 6899999999965 8999999999999987654310001123578888743
No 65
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.59 E-value=1.4e-14 Score=122.60 Aligned_cols=106 Identities=20% Similarity=0.312 Sum_probs=83.0
Q ss_pred CCCeEEEEEEEEeecCCCC--CCCCCeEEEEEECC--CCeEEeEeeCCCCCCCeeeeEEEEEeccC-CCCCCCceEEEEE
Q 035970 3 PPPRVLEISIVSGHDLALV--SKSMKTYSVAWVDP--ERKLTTRVDQNGLNNPSWNEKFVFRVDDR-FLTDETSAIMIEI 77 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p--~~k~rTrV~k~gg~NP~WNEtF~F~V~~~-~L~~~~s~L~VeV 77 (377)
.+...|+|+|++|++|+.. .+.+||||++.+.+ ..+.+|++.++ +.||.|||+|.|.+... .+ ....|.|+|
T Consensus 13 ~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~-t~~P~Wne~f~f~~~~~~~l--~~~~l~~~v 89 (125)
T cd08386 13 FQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRK-NLNPHWNETFLFEGFPYEKL--QQRVLYLQV 89 (125)
T ss_pred CCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecC-CCCCccceeEEEcccCHHHh--CCCEEEEEE
Confidence 3467899999999999643 57899999999953 35689999875 79999999999985321 12 346799999
Q ss_pred EEcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEee
Q 035970 78 YAAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVR 118 (377)
Q Consensus 78 yD~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lr 118 (377)
||++.+ .+++||.+.|+|.++..... ...|+.|.
T Consensus 90 ~d~d~~~~~~~iG~~~i~l~~l~~~~~-------~~~W~~l~ 124 (125)
T cd08386 90 LDYDRFSRNDPIGEVSLPLNKVDLTEE-------QTFWKDLK 124 (125)
T ss_pred EeCCCCcCCcEeeEEEEecccccCCCC-------cceEEecC
Confidence 999865 68999999999999875432 34688764
No 66
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.58 E-value=1.2e-14 Score=125.63 Aligned_cols=97 Identities=16% Similarity=0.245 Sum_probs=79.1
Q ss_pred CCeEEEEEEEEeecCCCC--CCCCCeEEEEEECC------CCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEE
Q 035970 4 PPRVLEISIVSGHDLALV--SKSMKTYSVAWVDP------ERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMI 75 (377)
Q Consensus 4 p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p------~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~V 75 (377)
..+.|.|+|++|++|+.. .+.+||||+|.+.+ ..+.+|+++++ +.||+|||+|.|.+...........|.|
T Consensus 14 ~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~-t~nP~wnE~f~f~i~~~~~~~~~~~l~~ 92 (133)
T cd04009 14 SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKK-TLFPLFDESFEFNVPPEQCSVEGALLLF 92 (133)
T ss_pred CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcC-CCCCccCCEEEEEechhhcccCCCEEEE
Confidence 457899999999999753 57899999999863 24689999875 7999999999999875321113568999
Q ss_pred EEEEcCcCC-CceeEEEEEEcccccCC
Q 035970 76 EIYAAAWLK-DALIGSVRVLISHLFGT 101 (377)
Q Consensus 76 eVyD~d~~~-DdlIG~a~IpLs~L~~~ 101 (377)
+|||++.++ |++||++.|+|.++..-
T Consensus 93 ~V~d~d~~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 93 TVKDYDLLGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred EEEecCCCCCCcEeEEEEEeHHHCCcc
Confidence 999999765 99999999999998753
No 67
>PLN03008 Phospholipase D delta
Probab=99.58 E-value=2.4e-14 Score=155.04 Aligned_cols=102 Identities=16% Similarity=0.241 Sum_probs=87.5
Q ss_pred CCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcCCCceeEEEEEEcccccCCcc
Q 035970 24 SMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWLKDALIGSVRVLISHLFGTLT 103 (377)
Q Consensus 24 ~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~~DdlIG~a~IpLs~L~~~~~ 103 (377)
++||||+|.++.....+|+|.++ +.||+|||+|.|.|... ...|.|+|||++.+++++||.+.|||.+|..+..
T Consensus 76 tSDPYV~I~Lg~~rv~RTrVi~n-~~NPvWNE~F~f~vah~-----~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~ 149 (868)
T PLN03008 76 TSDPYVTVVVPQATLARTRVLKN-SQEPLWDEKFNISIAHP-----FAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGER 149 (868)
T ss_pred CCCceEEEEECCcceeeEEeCCC-CCCCCcceeEEEEecCC-----CceEEEEEEcCCccCCceeEEEEEEHHHcCCCCc
Confidence 56999999997655679999865 78999999999999863 4689999999999999999999999999987643
Q ss_pred cCCCCCceeEEEEeeCCCCC---cceEEEEEEEEEecC
Q 035970 104 HNSSSSTRYVALQVRRPSGR---PQGILNLGITLLDNT 138 (377)
Q Consensus 104 ~~~~~~~~~v~y~Lrr~sGk---~~G~L~LsV~f~p~s 138 (377)
...|++|....++ ..+.|+|++.|.|..
T Consensus 150 -------vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv~ 180 (868)
T PLN03008 150 -------ISGWFPVLGASGKPPKAETAIFIDMKFTPFD 180 (868)
T ss_pred -------eEEEEEccccCCCCCCCCcEEEEEEEEEEcc
Confidence 3579999987664 467999999999875
No 68
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.58 E-value=5.5e-14 Score=125.16 Aligned_cols=118 Identities=18% Similarity=0.231 Sum_probs=94.6
Q ss_pred CeEEEEEEEEeecCCCCCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcC-cC
Q 035970 5 PRVLEISIVSGHDLALVSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAA-WL 83 (377)
Q Consensus 5 ~g~LeVtVISAkdL~~~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d-~~ 83 (377)
...|.|.|+.|++|+.. -+|||.|.+++....||+|..+ +.||.|||.|.|..... ...|.|.||..+ ..
T Consensus 10 ~~sL~v~V~EAk~Lp~~---~~~Y~~i~Ld~~~vaRT~v~~~-~~nP~W~E~F~f~~~~~-----~~~l~v~v~k~~~~~ 80 (146)
T cd04013 10 ENSLKLWIIEAKGLPPK---KRYYCELCLDKTLYARTTSKLK-TDTLFWGEHFEFSNLPP-----VSVITVNLYRESDKK 80 (146)
T ss_pred EEEEEEEEEEccCCCCc---CCceEEEEECCEEEEEEEEEcC-CCCCcceeeEEecCCCc-----ccEEEEEEEEccCcc
Confidence 46799999999999653 3899999999765679999865 78999999999976542 367999998664 22
Q ss_pred ----CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCc----------ceEEEEEEEEEecC
Q 035970 84 ----KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRP----------QGILNLGITLLDNT 138 (377)
Q Consensus 84 ----~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~----------~G~L~LsV~f~p~s 138 (377)
+|++||.+.||+.++..+.. ...||+|...++.+ .+.|+|+++|.+..
T Consensus 81 ~~~~~~~~IG~V~Ip~~~l~~~~~-------ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~ 142 (146)
T cd04013 81 KKKDKSQLIGTVNIPVTDVSSRQF-------VEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTR 142 (146)
T ss_pred ccccCCcEEEEEEEEHHHhcCCCc-------ccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEee
Confidence 68999999999999985432 35799999765543 46999999999874
No 69
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.58 E-value=3e-14 Score=120.10 Aligned_cols=106 Identities=20% Similarity=0.339 Sum_probs=84.6
Q ss_pred CCCeEEEEEEEEeecCCCC---CCCCCeEEEEEECC--CCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEE
Q 035970 3 PPPRVLEISIVSGHDLALV---SKSMKTYSVAWVDP--ERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEI 77 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~~---~g~~DPYVvV~L~p--~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeV 77 (377)
++.+.|.|+|++|++|+.. .+.+||||++++.+ ....+|++.++ +.||+|||+|.|.+....+ ....|.|+|
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~-~~~P~wne~f~f~i~~~~l--~~~~l~i~v 87 (123)
T cd08390 11 LEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRK-TQNPNFDETFVFQVSFKEL--QRRTLRLSV 87 (123)
T ss_pred CCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcC-CCCCccceEEEEEcCHHHh--cccEEEEEE
Confidence 4567899999999999753 46889999999854 34578988765 7999999999999876433 246899999
Q ss_pred EEcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEee
Q 035970 78 YAAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVR 118 (377)
Q Consensus 78 yD~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lr 118 (377)
||++.. .+++||++.|+|.++..... ...|++|.
T Consensus 88 ~d~~~~~~~~~iG~~~i~L~~l~~~~~-------~~~w~~L~ 122 (123)
T cd08390 88 YDVDRFSRHCIIGHVLFPLKDLDLVKG-------GVVWRDLE 122 (123)
T ss_pred EECCcCCCCcEEEEEEEeccceecCCC-------ceEEEeCC
Confidence 999865 58999999999999876533 24788764
No 70
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.57 E-value=1.8e-14 Score=125.16 Aligned_cols=91 Identities=21% Similarity=0.247 Sum_probs=76.0
Q ss_pred CCeEEEEEEEEeecCCC-CCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCc
Q 035970 4 PPRVLEISIVSGHDLAL-VSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAW 82 (377)
Q Consensus 4 p~g~LeVtVISAkdL~~-~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~ 82 (377)
..+.|+|+|++|++|.. ..+.+||||+|++++ .+++|+++++ +.||+|||+|.|...... ....|.|+|||++.
T Consensus 26 ~~~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~-~~~kT~vi~~-t~nPvWNE~F~f~~~~~~---~~~~L~v~V~D~d~ 100 (127)
T cd04032 26 GLATLTVTVLRATGLWGDYFTSTDGYVKVFFGG-QEKRTEVIWN-NNNPRWNATFDFGSVELS---PGGKLRFEVWDRDN 100 (127)
T ss_pred CcEEEEEEEEECCCCCcCcCCCCCeEEEEEECC-ccccCceecC-CCCCcCCCEEEEecccCC---CCCEEEEEEEeCCC
Confidence 35899999999999963 357889999999975 4889999875 799999999999753321 35789999999997
Q ss_pred C-CCceeEEEEEEccccc
Q 035970 83 L-KDALIGSVRVLISHLF 99 (377)
Q Consensus 83 ~-~DdlIG~a~IpLs~L~ 99 (377)
+ .|++||++.++|....
T Consensus 101 ~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 101 GWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred CCCCCeeEEEEEEecCCc
Confidence 6 7999999999998655
No 71
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.56 E-value=2.5e-14 Score=128.04 Aligned_cols=90 Identities=27% Similarity=0.490 Sum_probs=76.5
Q ss_pred CCCCeEEEEEEEEeecCCC--CCCCCCeEEEEEECCC----------------------------CeEEeEeeCCCCCCC
Q 035970 2 VPPPRVLEISIVSGHDLAL--VSKSMKTYSVAWVDPE----------------------------RKLTTRVDQNGLNNP 51 (377)
Q Consensus 2 ~~p~g~LeVtVISAkdL~~--~~g~~DPYVvV~L~p~----------------------------~k~rTrV~k~gg~NP 51 (377)
.+|...|.|+|++|++|.. ..+.+||||+|.+.+. ...+|++..+ +.||
T Consensus 24 ~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~-tlnP 102 (153)
T cd08676 24 EPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQ-TLNP 102 (153)
T ss_pred CCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecC-CCCC
Confidence 4678999999999999964 4688999999998642 2368888765 7999
Q ss_pred eeeeEEEEEeccCCCCCCCceEEEEEEEcCcCCCceeEEEEEEccccc
Q 035970 52 SWNEKFVFRVDDRFLTDETSAIMIEIYAAAWLKDALIGSVRVLISHLF 99 (377)
Q Consensus 52 ~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~~DdlIG~a~IpLs~L~ 99 (377)
.|||+|.|.+... ....|.|+|||++ |++||.+.|+++++.
T Consensus 103 ~WnE~F~f~v~~~----~~~~L~i~V~D~d---d~~IG~v~i~l~~l~ 143 (153)
T cd08676 103 VWNETFRFEVEDV----SNDQLHLDIWDHD---DDFLGCVNIPLKDLP 143 (153)
T ss_pred ccccEEEEEeccC----CCCEEEEEEEecC---CCeEEEEEEEHHHhC
Confidence 9999999999753 2578999999988 899999999999987
No 72
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.56 E-value=7.3e-14 Score=123.79 Aligned_cols=90 Identities=26% Similarity=0.449 Sum_probs=77.7
Q ss_pred eEEEEEEEEeecCCCC-CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC-
Q 035970 6 RVLEISIVSGHDLALV-SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL- 83 (377)
Q Consensus 6 g~LeVtVISAkdL~~~-~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~- 83 (377)
+.|.|+|++|++|+.. .+.+||||++.++ .++.+|++.++ +.||+|||+|.|.+.++ ...|.|+|||++.+
T Consensus 2 G~L~V~Vi~a~nL~~~d~~~sDPYV~v~~g-~~~~kT~vvk~-t~nP~WnE~f~f~i~~~-----~~~l~~~V~D~d~~~ 74 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDFTSSDPYVVLTLG-NQKVKTRVIKK-NLNPVWNEELTLSVPNP-----MAPLKLEVFDKDTFS 74 (145)
T ss_pred eEEEEEEEeeECCCCCCCCCcCcEEEEEEC-CEEEEeeeEcC-CCCCeecccEEEEecCC-----CCEEEEEEEECCCCC
Confidence 7899999999999632 2789999999997 46889999875 79999999999999864 57899999999965
Q ss_pred CCceeEEEEEEcccccCCc
Q 035970 84 KDALIGSVRVLISHLFGTL 102 (377)
Q Consensus 84 ~DdlIG~a~IpLs~L~~~~ 102 (377)
.|++||++.++|.++....
T Consensus 75 ~dd~iG~a~i~l~~l~~~~ 93 (145)
T cd04038 75 KDDSMGEAEIDLEPLVEAA 93 (145)
T ss_pred CCCEEEEEEEEHHHhhhhh
Confidence 6899999999999987653
No 73
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.56 E-value=1.5e-14 Score=126.81 Aligned_cols=92 Identities=18% Similarity=0.294 Sum_probs=75.9
Q ss_pred CCCeEEEEEEEEeecCCCC--CCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEE
Q 035970 3 PPPRVLEISIVSGHDLALV--SKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIE 76 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~Ve 76 (377)
+....|.|+|++|+||... .+.+||||++++.++ .+.+|+|.++ +.||+|||+|.|.|+...+ ....|.|+
T Consensus 12 ~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~-t~nP~~nE~f~F~v~~~~l--~~~~l~~~ 88 (136)
T cd08406 12 PTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRD-DTNPIFNEAMIFSVPAIVL--QDLSLRVT 88 (136)
T ss_pred CCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccC-CCCCeeceeEEEECCHHHh--CCcEEEEE
Confidence 4467899999999999753 578999999999653 2567888765 7999999999999986544 56789999
Q ss_pred EEEcCc-CCCceeEEEEEEccc
Q 035970 77 IYAAAW-LKDALIGSVRVLISH 97 (377)
Q Consensus 77 VyD~d~-~~DdlIG~a~IpLs~ 97 (377)
|||++. .++++||++.|+...
T Consensus 89 V~~~d~~~~~~~iG~v~lg~~~ 110 (136)
T cd08406 89 VAESTEDGKTPNVGHVIIGPAA 110 (136)
T ss_pred EEeCCCCCCCCeeEEEEECCCC
Confidence 999985 579999999997654
No 74
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.55 E-value=1.9e-14 Score=126.75 Aligned_cols=92 Identities=16% Similarity=0.300 Sum_probs=76.5
Q ss_pred CCCeEEEEEEEEeecCCCCC----CCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEE
Q 035970 3 PPPRVLEISIVSGHDLALVS----KSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIM 74 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~~~----g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~ 74 (377)
+..+.|.|+|++|+||.... +.+||||+|++.+. .+.+|++.++ +.||+|||.|.|.|+...| ....|.
T Consensus 12 ~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~-t~nPvfNE~f~F~v~~~~L--~~~~L~ 88 (138)
T cd08407 12 PAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKH-KINPVWNEMIMFELPSELL--AASSVE 88 (138)
T ss_pred CCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeC-CCCCccccEEEEECCHHHh--CccEEE
Confidence 45688999999999997542 45899999999753 3568998765 8999999999999987655 467899
Q ss_pred EEEEEcCcC-CCceeEEEEEEccc
Q 035970 75 IEIYAAAWL-KDALIGSVRVLISH 97 (377)
Q Consensus 75 VeVyD~d~~-~DdlIG~a~IpLs~ 97 (377)
|+|||++.+ ++++||.+.+++..
T Consensus 89 ~~V~d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 89 LEVLNQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred EEEEeCCCCcCcceeceEEecCcC
Confidence 999999865 69999999999865
No 75
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.54 E-value=4.5e-14 Score=123.35 Aligned_cols=105 Identities=22% Similarity=0.349 Sum_probs=84.3
Q ss_pred EEEEEEEeecCCCC-CCCCCeEEEEEECC---CCeEEeEeeCCCCCCCeeeeEEEEEeccCCCC-----------CCCce
Q 035970 8 LEISIVSGHDLALV-SKSMKTYSVAWVDP---ERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLT-----------DETSA 72 (377)
Q Consensus 8 LeVtVISAkdL~~~-~g~~DPYVvV~L~p---~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~-----------~~~s~ 72 (377)
|+|+|++|++|... .+.+||||+|+++. ..+++|+++++ +.||.|||+|.|.+...... .....
T Consensus 1 L~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~-t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKK-TNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeC-CCCCCcceEEEEEccccccccccccccccccccccE
Confidence 68999999999755 57899999999974 46789999875 79999999999998764100 03468
Q ss_pred EEEEEEEcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCC
Q 035970 73 IMIEIYAAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRP 120 (377)
Q Consensus 73 L~VeVyD~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~ 120 (377)
|.|+|||.+.+ .++|||++.|+|.++..... ...||+|...
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~-------~~~W~~L~~~ 121 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGS-------HQAWYFLQPR 121 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCc-------ccceEecCCc
Confidence 99999999876 79999999999999875432 2479988864
No 76
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.54 E-value=1.3e-14 Score=125.38 Aligned_cols=110 Identities=20% Similarity=0.206 Sum_probs=83.3
Q ss_pred CCeEEEEEEEEeecCCCC--CCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEE
Q 035970 4 PPRVLEISIVSGHDLALV--SKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEI 77 (377)
Q Consensus 4 p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeV 77 (377)
..+.|.|+|++|++|... .+.+||||++.+.+. .+.+|+|.++ +.||.|||+|.|.+....+ ....|.|+|
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~-t~nP~w~e~F~f~v~~~~~--~~~~l~~~v 89 (136)
T cd08404 13 TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKC-TLNPVFNESFVFDIPSEEL--EDISVEFLV 89 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccC-CCCCccCceEEEECCHHHh--CCCEEEEEE
Confidence 457899999999999753 578999999998643 2567888765 7999999999999875433 356799999
Q ss_pred EEcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcc
Q 035970 78 YAAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQ 125 (377)
Q Consensus 78 yD~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~ 125 (377)
||++.+ ++++||++.|++...... ...|+.+.+..+++.
T Consensus 90 ~d~d~~~~~~~iG~~~~~~~~~~~~---------~~~w~~l~~~~~~~i 129 (136)
T cd08404 90 LDSDRVTKNEVIGRLVLGPKASGSG---------GHHWKEVCNPPRRQI 129 (136)
T ss_pred EECCCCCCCccEEEEEECCcCCCch---------HHHHHHHHhCCCCee
Confidence 999865 689999999999882111 124666655545543
No 77
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.52 E-value=6.3e-14 Score=120.22 Aligned_cols=92 Identities=21% Similarity=0.369 Sum_probs=76.2
Q ss_pred CCCeEEEEEEEEeecCCCC--CCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEE
Q 035970 3 PPPRVLEISIVSGHDLALV--SKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIE 76 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~Ve 76 (377)
+..+.|.|+|++|++|... .+.+||||++.+.+. .+.+|++.++ +.||.|||+|.|.+....+ ....|.|+
T Consensus 10 ~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~l--~~~~l~~~ 86 (133)
T cd08384 10 TQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKK-TLNPEFNEEFFYDIKHSDL--AKKTLEIT 86 (133)
T ss_pred CCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEec-cCCCCcccEEEEECCHHHh--CCCEEEEE
Confidence 3468999999999999753 578999999999642 4678998875 8999999999999876433 34689999
Q ss_pred EEEcCcC-CCceeEEEEEEccc
Q 035970 77 IYAAAWL-KDALIGSVRVLISH 97 (377)
Q Consensus 77 VyD~d~~-~DdlIG~a~IpLs~ 97 (377)
|||++.. .|++||.+.|++..
T Consensus 87 V~d~d~~~~~~~lG~~~i~l~~ 108 (133)
T cd08384 87 VWDKDIGKSNDYIGGLQLGINA 108 (133)
T ss_pred EEeCCCCCCccEEEEEEEecCC
Confidence 9999865 68999999999975
No 78
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.52 E-value=7e-14 Score=125.70 Aligned_cols=95 Identities=18% Similarity=0.317 Sum_probs=77.3
Q ss_pred CCeEEEEEEEEeecCCCC--CCCCCeEEEEEECC----CCeEEeEeeCCCCCCCeeeeEEEEEec-cCCCCCCCceEEEE
Q 035970 4 PPRVLEISIVSGHDLALV--SKSMKTYSVAWVDP----ERKLTTRVDQNGLNNPSWNEKFVFRVD-DRFLTDETSAIMIE 76 (377)
Q Consensus 4 p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p----~~k~rTrV~k~gg~NP~WNEtF~F~V~-~~~L~~~~s~L~Ve 76 (377)
+.+.|.|+|++|++|+.. .+.+||||++++.+ ..+++|+|+++ +.||.|||+|.|.+. ...+ ....|.|+
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~-t~nP~WnE~f~f~~~~~~~l--~~~~L~i~ 101 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKK-SVNPVWNHTFVYDGVSPEDL--SQACLELT 101 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCC-CCCCCCCCEEEEecCCHHHh--CCCEEEEE
Confidence 568999999999999754 57899999999853 25789999876 799999999999853 2222 24579999
Q ss_pred EEEcCcC-CCceeEEEEEEcccccCC
Q 035970 77 IYAAAWL-KDALIGSVRVLISHLFGT 101 (377)
Q Consensus 77 VyD~d~~-~DdlIG~a~IpLs~L~~~ 101 (377)
|||++.+ +|++||++.|++.++...
T Consensus 102 V~d~d~~~~d~~lG~v~i~l~~~~~~ 127 (162)
T cd04020 102 VWDHDKLSSNDFLGGVRLGLGTGKSY 127 (162)
T ss_pred EEeCCCCCCCceEEEEEEeCCccccC
Confidence 9999866 599999999999997643
No 79
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.51 E-value=7.1e-14 Score=120.66 Aligned_cols=93 Identities=19% Similarity=0.301 Sum_probs=75.4
Q ss_pred CCCeEEEEEEEEeecCCCC--CCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEE
Q 035970 3 PPPRVLEISIVSGHDLALV--SKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIE 76 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~Ve 76 (377)
+..+.|+|+|++|++|+.. .+.+||||+|.+.+. .+.+|++.++ +.||.|||+|.|.+....+ ....|.|+
T Consensus 12 ~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~l--~~~~l~~~ 88 (136)
T cd08402 12 PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKR-TLNPYYNESFSFEVPFEQI--QKVHLIVT 88 (136)
T ss_pred CCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeC-CCCCcccceEEEECCHHHh--CCCEEEEE
Confidence 5678999999999999753 578999999998532 3567887654 7999999999999875433 23579999
Q ss_pred EEEcCcC-CCceeEEEEEEcccc
Q 035970 77 IYAAAWL-KDALIGSVRVLISHL 98 (377)
Q Consensus 77 VyD~d~~-~DdlIG~a~IpLs~L 98 (377)
|||++.+ .|++||++.|++...
T Consensus 89 v~d~~~~~~~~~iG~~~i~~~~~ 111 (136)
T cd08402 89 VLDYDRIGKNDPIGKVVLGCNAT 111 (136)
T ss_pred EEeCCCCCCCceeEEEEECCccC
Confidence 9999865 689999999999763
No 80
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.51 E-value=2.2e-15 Score=152.52 Aligned_cols=214 Identities=16% Similarity=0.164 Sum_probs=144.9
Q ss_pred CeEEEEEEEEeecCC--CCCCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEE
Q 035970 5 PRVLEISIVSGHDLA--LVSKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIY 78 (377)
Q Consensus 5 ~g~LeVtVISAkdL~--~~~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVy 78 (377)
...|+|+|..|+||. +++|-+||||.+.+.|+ .+++|++++. ++||+|||+|.|.+.+.. ....|.||||
T Consensus 179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~-~LNP~wNEtftf~Lkp~D---kdrRlsiEvW 254 (683)
T KOG0696|consen 179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKA-TLNPVWNETFTFKLKPSD---KDRRLSIEVW 254 (683)
T ss_pred CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhh-hcCccccceeEEeccccc---ccceeEEEEe
Confidence 357899999999996 45899999999999764 5678888875 899999999999998763 4688999999
Q ss_pred EcC-cCCCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCC-CC----------cceEEEEE-----EEEEecCC--
Q 035970 79 AAA-WLKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPS-GR----------PQGILNLG-----ITLLDNTM-- 139 (377)
Q Consensus 79 D~d-~~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~s-Gk----------~~G~L~Ls-----V~f~p~s~-- 139 (377)
|+| +.+++|+|...+.+++|...+. ..||.|.... |. ..+...+. .+..+.+.
T Consensus 255 DWDrTsRNDFMGslSFgisEl~K~p~--------~GWyKlLsqeEGEyyNvp~~~~~~e~~~~lr~k~~~~~~~~~~s~p 326 (683)
T KOG0696|consen 255 DWDRTSRNDFMGSLSFGISELQKAPV--------DGWYKLLSQEEGEYYNVPVPDEDSEDNEELRQKFERARIGPGSSKP 326 (683)
T ss_pred cccccccccccceecccHHHHhhcch--------hhHHHHhhhhcCceeccCCCCchhhHHHHHHHHHhhcccCCCcCCC
Confidence 999 5689999999999999987643 2466665421 11 11111110 11111110
Q ss_pred --CCCCcchhhcCCCCccccccccccccc----CCCccccccccCCcchhhhhhhccccCCcchhhhhhccccccccccc
Q 035970 140 --RSMPLFAELCGAGANFSEVSSGANDVM----KPETTTAQNSKQSKDDQELERVLKPKDNSLSKAKLRRSQSDKTDLTS 213 (377)
Q Consensus 140 --~s~P~~~~~~~~~~~~~~~~vg~r~l~----g~~~k~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~s~~~~~~~ 213 (377)
..+|.-...+....+-.--+..|-=|| |...|+|--...-+..-|+-+||| ||-.|-++.+-=|--|+-.|+-
T Consensus 327 ~~~~~~~~~~~~~~~~~d~i~~tDFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLk-KDViiQdDDvectm~EKrvLAL 405 (683)
T KOG0696|consen 327 EKKTMPTDSKFHNSSKRDRIKATDFNFLMVLGKGSFGKVLLAERKGTDELYAIKILK-KDVIIQDDDVECTMVEKRVLAL 405 (683)
T ss_pred CCCCCCCcccCCCCCcccceeecccceEEEeccCccceeeeecccCcchhhhhhhhc-cceeeecCcccceehhhhheec
Confidence 001111111100000001112222222 778888876666788999999999 6878877778778888888777
Q ss_pred cc---------cccCCCcccccccCCc
Q 035970 214 ED---------YSKNSSHQAQQPTGTG 231 (377)
Q Consensus 214 ~~---------~~~~~~~~~~~~~~~~ 231 (377)
.+ -+|||..+.|-|.-|+
T Consensus 406 ~~kppFL~qlHScFQTmDRLyFVMEyv 432 (683)
T KOG0696|consen 406 PGKPPFLVQLHSCFQTMDRLYFVMEYV 432 (683)
T ss_pred CCCCchHHHHHHHhhhhhheeeEEEEe
Confidence 66 4899999999999887
No 81
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.50 E-value=2.2e-13 Score=115.38 Aligned_cols=96 Identities=16% Similarity=0.304 Sum_probs=77.6
Q ss_pred CCeEEEEEEEEeecCCCC--CCCCCeEEEEEECC----CCeEEeEeeCCCCCCCeeeeEEEEE-eccCCCCCCCceEEEE
Q 035970 4 PPRVLEISIVSGHDLALV--SKSMKTYSVAWVDP----ERKLTTRVDQNGLNNPSWNEKFVFR-VDDRFLTDETSAIMIE 76 (377)
Q Consensus 4 p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p----~~k~rTrV~k~gg~NP~WNEtF~F~-V~~~~L~~~~s~L~Ve 76 (377)
..+.|+|+|++|++|... .+.+||||++.+.+ ..+.+|+++++ +.||.|||+|.|. +....+ ....|.|+
T Consensus 13 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~-~~~P~Wne~f~f~~~~~~~~--~~~~l~~~ 89 (123)
T cd04035 13 ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHK-TRNPEFNETLTYYGITEEDI--QRKTLRLL 89 (123)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecC-CCCCCccceEEEcCCCHHHh--CCCEEEEE
Confidence 457899999999999753 47899999999853 24689998875 7999999999996 433222 24689999
Q ss_pred EEEcCcCCCceeEEEEEEcccccCCc
Q 035970 77 IYAAAWLKDALIGSVRVLISHLFGTL 102 (377)
Q Consensus 77 VyD~d~~~DdlIG~a~IpLs~L~~~~ 102 (377)
|||++.+++++||++.++|++|....
T Consensus 90 v~d~~~~~~~~iG~~~i~l~~l~~~~ 115 (123)
T cd04035 90 VLDEDRFGNDFLGETRIPLKKLKPNQ 115 (123)
T ss_pred EEEcCCcCCeeEEEEEEEcccCCCCc
Confidence 99998668999999999999997653
No 82
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.50 E-value=1.2e-13 Score=119.96 Aligned_cols=90 Identities=19% Similarity=0.329 Sum_probs=72.5
Q ss_pred CCCeEEEEEEEEeecCCC--CCCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEE
Q 035970 3 PPPRVLEISIVSGHDLAL--VSKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIE 76 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~--~~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~Ve 76 (377)
+..+.|.|+|++|++|.. ..+.+||||++.+.+. .+.+|+|.++ +.||+|||+|.|.+....+ ....|.|+
T Consensus 11 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~-t~nP~wnE~F~f~i~~~~l--~~~~l~~~ 87 (135)
T cd08410 11 PSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRG-TIDPFYNESFSFKVPQEEL--ENVSLVFT 87 (135)
T ss_pred CCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccC-CCCCccceeEEEeCCHHHh--CCCEEEEE
Confidence 556899999999999975 3578999999998432 3578888765 8999999999999965433 23579999
Q ss_pred EEEcCc-CCCceeEEEEEEc
Q 035970 77 IYAAAW-LKDALIGSVRVLI 95 (377)
Q Consensus 77 VyD~d~-~~DdlIG~a~IpL 95 (377)
|||++. .+|++||++.|..
T Consensus 88 V~d~d~~~~~~~iG~~~l~~ 107 (135)
T cd08410 88 VYGHNVKSSNDFIGRIVIGQ 107 (135)
T ss_pred EEeCCCCCCCcEEEEEEEcC
Confidence 999985 4799999988654
No 83
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.50 E-value=1.2e-13 Score=121.08 Aligned_cols=93 Identities=19% Similarity=0.306 Sum_probs=76.7
Q ss_pred CCCeEEEEEEEEeecCCCC--CCCCCeEEEEEECCC-----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEE
Q 035970 3 PPPRVLEISIVSGHDLALV--SKSMKTYSVAWVDPE-----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMI 75 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~-----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~V 75 (377)
+..+.|.|+|++|+||... .+..||||++.+.+. .+.+|++.++ +.||+|||+|.|.++...+ ....|.|
T Consensus 12 ~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~-t~nPvfnEtF~f~i~~~~l--~~~~L~~ 88 (138)
T cd08408 12 ALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRG-QPDPEFKETFVFQVALFQL--SEVTLMF 88 (138)
T ss_pred CCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecC-CCCCcEeeeEEEECCHHHh--CccEEEE
Confidence 3468899999999999754 578999999999652 2468998864 7999999999999986544 4578999
Q ss_pred EEEEcCc-CCCceeEEEEEEcccc
Q 035970 76 EIYAAAW-LKDALIGSVRVLISHL 98 (377)
Q Consensus 76 eVyD~d~-~~DdlIG~a~IpLs~L 98 (377)
.|||.+. .++++||++.|++...
T Consensus 89 ~V~~~~~~~~~~~iG~v~l~~~~~ 112 (138)
T cd08408 89 SVYNKRKMKRKEMIGWFSLGLNSS 112 (138)
T ss_pred EEEECCCCCCCcEEEEEEECCcCC
Confidence 9999985 4799999999988754
No 84
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.50 E-value=6.9e-14 Score=162.70 Aligned_cols=122 Identities=16% Similarity=0.217 Sum_probs=101.1
Q ss_pred CCCeEEEEEEEEeecCCCCCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCc
Q 035970 3 PPPRVLEISIVSGHDLALVSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAW 82 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~ 82 (377)
.-.|.|.|+|++|+||....+.+||||++.++...+.+|+|+++ +.||+|||.|.|.+.++.. +..|+|+|||++.
T Consensus 1977 ~~~G~L~V~V~~a~nl~~~~~~sdPyv~l~~g~~~~~kTkvvk~-~~nP~Wne~f~~~~~~p~~---~~~l~iev~d~d~ 2052 (2102)
T PLN03200 1977 CLPGSLTVTIKRGNNLKQSMGNTNAFCKLTLGNGPPRQTKVVSH-SSSPEWKEGFTWAFDSPPK---GQKLHISCKSKNT 2052 (2102)
T ss_pred hCCcceEEEEeeccccccccCCCCCeEEEEECCCCcccccccCC-CCCCCcccceeeeecCCCC---CCceEEEEEecCc
Confidence 34689999999999999656899999999998655778999986 7999999999999887642 5679999999998
Q ss_pred CCCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcceE---EEEEEEEEe
Q 035970 83 LKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQGI---LNLGITLLD 136 (377)
Q Consensus 83 ~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~G~---L~LsV~f~p 136 (377)
++++.+|.+.|+|.++..... ...||+|.+ +|+..|. |++.+.|.+
T Consensus 2053 f~kd~~G~~~i~l~~vv~~~~-------~~~~~~L~~-~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2053 FGKSSLGKVTIQIDRVVMEGT-------YSGEYSLNP-ESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred cCCCCCceEEEEHHHHhcCce-------eeeeeecCc-ccccCCCcceEEEEEEecC
Confidence 888899999999999987654 246899884 3444565 888877653
No 85
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.50 E-value=1.2e-13 Score=120.40 Aligned_cols=93 Identities=23% Similarity=0.333 Sum_probs=75.8
Q ss_pred CCCeEEEEEEEEeecCCCC-CCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEE
Q 035970 3 PPPRVLEISIVSGHDLALV-SKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEI 77 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~~-~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeV 77 (377)
+..+.|.|+|++|+||... .+.+||||+|++.+. .+++|++.+ ++.||+|||+|.|.|+...+ ....|.|+|
T Consensus 12 ~~~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT~v~~-~~~nP~fnE~F~f~i~~~~l--~~~~L~~~V 88 (137)
T cd08409 12 PTLNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKTEVVD-GAASPSFNESFSFKVTSRQL--DTASLSLSV 88 (137)
T ss_pred CCCCeEEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeecccEe-CCCCCcccceEEEECCHHHh--CccEEEEEE
Confidence 3467899999999999643 567999999998753 356888876 48999999999999986555 457899999
Q ss_pred EEcCc-CCCceeEEEEEEcccc
Q 035970 78 YAAAW-LKDALIGSVRVLISHL 98 (377)
Q Consensus 78 yD~d~-~~DdlIG~a~IpLs~L 98 (377)
|+++. .++++||++.|+....
T Consensus 89 ~~~~~~~~~~~lG~v~ig~~~~ 110 (137)
T cd08409 89 MQSGGVRKSKLLGRVVLGPFMY 110 (137)
T ss_pred EeCCCCCCcceEEEEEECCccc
Confidence 99985 5789999999986543
No 86
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.49 E-value=2.2e-13 Score=116.61 Aligned_cols=89 Identities=17% Similarity=0.194 Sum_probs=73.5
Q ss_pred EEEEEEEEeecCCCC--CCCCCeEEEEEECCC-CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC
Q 035970 7 VLEISIVSGHDLALV--SKSMKTYSVAWVDPE-RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL 83 (377)
Q Consensus 7 ~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~-~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~ 83 (377)
+|+|+|++|++|... .+.+||||++++++. ...+|+++++ +.||+|||+|.|.+..+ ....|.|+|||++.+
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~-t~nP~Wne~f~f~~~~~----~~~~L~~~V~d~d~~ 75 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPN-TLNPVFGKMFELEATLP----GNSILKISVMDYDLL 75 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEEC-CCCCccceEEEEEecCC----CCCEEEEEEEECCCC
Confidence 489999999999753 578999999999753 2356777665 89999999999998643 357899999999865
Q ss_pred -CCceeEEEEEEcccccC
Q 035970 84 -KDALIGSVRVLISHLFG 100 (377)
Q Consensus 84 -~DdlIG~a~IpLs~L~~ 100 (377)
.|++||++.|+|.+..-
T Consensus 76 ~~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 76 GSDDLIGETVIDLEDRFF 93 (124)
T ss_pred CCCceeEEEEEeeccccc
Confidence 79999999999998653
No 87
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.49 E-value=1.3e-13 Score=118.85 Aligned_cols=91 Identities=24% Similarity=0.371 Sum_probs=74.0
Q ss_pred CCCeEEEEEEEEeecCCCC--CCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEE
Q 035970 3 PPPRVLEISIVSGHDLALV--SKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIE 76 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~Ve 76 (377)
++.+.|+|+|++|++|+.. .+.+||||+|.+.+. .+.+|++.+ ++.||+|||+|.|.+....+ ....|.|+
T Consensus 11 ~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~i~~~~~--~~~~l~~~ 87 (134)
T cd08403 11 PTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKK-NTLNPTYNEALVFDVPPENV--DNVSLIIA 87 (134)
T ss_pred CCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCccc-CCCCCcccceEEEECCHHHh--CCCEEEEE
Confidence 5678999999999999754 578999999998532 356888765 47999999999999875433 23569999
Q ss_pred EEEcCcC-CCceeEEEEEEcc
Q 035970 77 IYAAAWL-KDALIGSVRVLIS 96 (377)
Q Consensus 77 VyD~d~~-~DdlIG~a~IpLs 96 (377)
|||++.+ .|++||++.|++.
T Consensus 88 v~d~~~~~~~~~IG~~~l~~~ 108 (134)
T cd08403 88 VVDYDRVGHNELIGVCRVGPN 108 (134)
T ss_pred EEECCCCCCCceeEEEEECCC
Confidence 9999865 5999999999876
No 88
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=2.6e-13 Score=139.11 Aligned_cols=126 Identities=22% Similarity=0.332 Sum_probs=101.8
Q ss_pred CCeEEEEEEEEeecCCCC--CCCCCeEEEEEECCC--CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEE
Q 035970 4 PPRVLEISIVSGHDLALV--SKSMKTYSVAWVDPE--RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYA 79 (377)
Q Consensus 4 p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~--~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD 79 (377)
....|.|+|+.|++|+.. .+.+||||++++.|+ .+.+|+|.++ +.||+|||+|.|.|....+ ....|.|.|||
T Consensus 165 ~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~-tlnP~fnEtf~f~v~~~~l--~~~~L~l~V~~ 241 (421)
T KOG1028|consen 165 ELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRK-TLNPVFNETFRFEVPYEEL--SNRVLHLSVYD 241 (421)
T ss_pred cCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeec-CcCCccccceEeecCHHHh--ccCEEEEEEEe
Confidence 356899999999999743 467999999999875 5789999875 8999999999999876544 57899999999
Q ss_pred cCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCC---CCCcceEEEEEEEEEecCC
Q 035970 80 AAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRP---SGRPQGILNLGITLLDNTM 139 (377)
Q Consensus 80 ~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~---sGk~~G~L~LsV~f~p~s~ 139 (377)
.|.| ++++||++.++|..+..... ...|+.+... .....|+|.++++|.+...
T Consensus 242 ~drfsr~~~iGev~~~l~~~~~~~~-------~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g 298 (421)
T KOG1028|consen 242 FDRFSRHDFIGEVILPLGEVDLLST-------TLFWKDLQPSSTDSEELAGELLLSLCYLPTAG 298 (421)
T ss_pred cCCcccccEEEEEEecCcccccccc-------ceeeeccccccCCcccccceEEEEEEeecCCC
Confidence 9965 79999999999888755421 2468888763 2223389999999999864
No 89
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.49 E-value=1.3e-13 Score=118.97 Aligned_cols=92 Identities=20% Similarity=0.380 Sum_probs=75.0
Q ss_pred CCeEEEEEEEEeecCCC--CCCCCCeEEEEEECC----CCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEE
Q 035970 4 PPRVLEISIVSGHDLAL--VSKSMKTYSVAWVDP----ERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEI 77 (377)
Q Consensus 4 p~g~LeVtVISAkdL~~--~~g~~DPYVvV~L~p----~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeV 77 (377)
..+.|.|+|++|++|.. ..+.+||||+|.+.+ ..+.+|++.++ +.||.|||+|.|.+....+ ....|.|+|
T Consensus 13 ~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~-t~~P~wne~F~f~i~~~~~--~~~~l~~~v 89 (136)
T cd08405 13 TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKR-TLNPVFNESFIFNIPLERL--RETTLIITV 89 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeC-CCCCcccceEEEeCCHHHh--CCCEEEEEE
Confidence 45789999999999975 457899999999842 13568988765 7999999999999864322 246899999
Q ss_pred EEcCcC-CCceeEEEEEEcccc
Q 035970 78 YAAAWL-KDALIGSVRVLISHL 98 (377)
Q Consensus 78 yD~d~~-~DdlIG~a~IpLs~L 98 (377)
||++.+ .|++||++.|++.+.
T Consensus 90 ~d~~~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 90 MDKDRLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred EECCCCCCCcEeEEEEECCccC
Confidence 999865 689999999999875
No 90
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.48 E-value=2.7e-13 Score=115.96 Aligned_cols=103 Identities=19% Similarity=0.261 Sum_probs=84.0
Q ss_pred eEEEEEEEEeecCCC--CCCCCCeEEEEEECC----CCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEE
Q 035970 6 RVLEISIVSGHDLAL--VSKSMKTYSVAWVDP----ERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYA 79 (377)
Q Consensus 6 g~LeVtVISAkdL~~--~~g~~DPYVvV~L~p----~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD 79 (377)
+.|.|+|++|++|+. ..+..||||+|.+.+ ..+.+|++.++ +.||.|||+|.|.+.... ....|.|+|||
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~-~~~P~wne~f~~~~~~~~---~~~~l~v~v~d 88 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKK-TLNPVWNETFTFDLKPAD---KDRRLSIEVWD 88 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecC-CCCCCccceEEEeCCchh---cCCEEEEEEEE
Confidence 679999999999974 357899999999963 25788998765 799999999999987532 24689999999
Q ss_pred cCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCC
Q 035970 80 AAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRP 120 (377)
Q Consensus 80 ~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~ 120 (377)
++.. .+++||++.++|.++.... ...||+|.+.
T Consensus 89 ~~~~~~~~~iG~~~~~l~~l~~~~--------~~~w~~L~~~ 122 (131)
T cd04026 89 WDRTTRNDFMGSLSFGVSELIKMP--------VDGWYKLLNQ 122 (131)
T ss_pred CCCCCCcceeEEEEEeHHHhCcCc--------cCceEECcCc
Confidence 9865 6899999999999987541 2469999864
No 91
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.48 E-value=3.5e-13 Score=113.98 Aligned_cols=96 Identities=17% Similarity=0.225 Sum_probs=76.0
Q ss_pred EEEEeecCCCC--CCCCCeEEEEEECCCC------eEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCc
Q 035970 11 SIVSGHDLALV--SKSMKTYSVAWVDPER------KLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAW 82 (377)
Q Consensus 11 tVISAkdL~~~--~g~~DPYVvV~L~p~~------k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~ 82 (377)
-.|+|++|... .+.+||||++++.+.. .++|+++++ +.||+|||+|.|.+... ....|.|+|||++.
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~-t~nP~wne~f~f~~~~~----~~~~l~~~V~d~d~ 79 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKN-NLNPDFVTTFTVDYYFE----EVQKLRFEVYDVDS 79 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCC-CCCCCceEEEEEEEEeE----eeeEEEEEEEEecC
Confidence 34899999643 5789999999997543 478999875 79999999999986533 24689999999985
Q ss_pred ----C-CCceeEEEEEEcccccCCcccCCCCCceeEEEEee
Q 035970 83 ----L-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVR 118 (377)
Q Consensus 83 ----~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lr 118 (377)
+ +|++||++.+++.+|..... ...+++|.
T Consensus 80 ~~~~~~~~d~iG~~~i~l~~l~~~~~-------~~~~~~l~ 113 (120)
T cd04048 80 KSKDLSDHDFLGEAECTLGEIVSSPG-------QKLTLPLK 113 (120)
T ss_pred CcCCCCCCcEEEEEEEEHHHHhcCCC-------cEEEEEcc
Confidence 3 68999999999999976532 24677773
No 92
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.47 E-value=2.7e-13 Score=115.32 Aligned_cols=91 Identities=21% Similarity=0.272 Sum_probs=76.1
Q ss_pred CCeEEEEEEEEeecCCCC--CCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEE
Q 035970 4 PPRVLEISIVSGHDLALV--SKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEI 77 (377)
Q Consensus 4 p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeV 77 (377)
..+.|.|+|++|++|+.. .+.+||||++.+.+. .+.+|++..+ +.||.|||+|.|.+....+ ....|.|+|
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~-~~~P~wne~f~f~i~~~~l--~~~~l~~~v 88 (134)
T cd00276 12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKG-TLNPVFNEAFSFDVPAEQL--EEVSLVITV 88 (134)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceec-CCCCeeeeeEEEECCHHHh--CCcEEEEEE
Confidence 457899999999999754 578999999999753 3568888764 7899999999999986433 357899999
Q ss_pred EEcCc-CCCceeEEEEEEccc
Q 035970 78 YAAAW-LKDALIGSVRVLISH 97 (377)
Q Consensus 78 yD~d~-~~DdlIG~a~IpLs~ 97 (377)
||.+. ..+++||.+.|+|.+
T Consensus 89 ~d~~~~~~~~~lG~~~i~l~~ 109 (134)
T cd00276 89 VDKDSVGRNEVIGQVVLGPDS 109 (134)
T ss_pred EecCCCCCCceeEEEEECCCC
Confidence 99986 478999999999998
No 93
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.47 E-value=3.4e-13 Score=116.27 Aligned_cols=80 Identities=25% Similarity=0.438 Sum_probs=67.3
Q ss_pred EEEEEEEeecCCCCCCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcC--
Q 035970 8 LEISIVSGHDLALVSKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAA-- 81 (377)
Q Consensus 8 LeVtVISAkdL~~~~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d-- 81 (377)
|.|+|++|+||+ +.+||||++.+++. .+.+|+++++ +.||+|||+|.|.+.. ...|.|.|||+.
T Consensus 1 L~V~V~~A~~L~---~~sDPYV~l~v~~~~~~~~~~KTk~i~~-TlnPvWnE~F~i~l~~------s~~L~~~v~d~~~~ 70 (118)
T cd08686 1 LNVIVHSAQGFK---QSANLYCTLEVDSFGYFVKKAKTRVCRD-TTEPNWNEEFEIELEG------SQTLRILCYEKCYS 70 (118)
T ss_pred CEEEEEeCCCCC---CCCCCEEEEEEcCccccceeeeeeeecC-CCCCccceEEEEEeCC------CCEEEEEEEEcccc
Confidence 689999999996 45899999999753 4689999875 8999999999999974 469999999983
Q ss_pred -----c-CCCceeEEEEEEccc
Q 035970 82 -----W-LKDALIGSVRVLISH 97 (377)
Q Consensus 82 -----~-~~DdlIG~a~IpLs~ 97 (377)
. ..|+++|.+.|.|.-
T Consensus 71 ~~~~d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 71 KVKLDGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred cccccccCcccEEEEEEEEECH
Confidence 2 358999999988753
No 94
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.44 E-value=6.2e-13 Score=117.10 Aligned_cols=94 Identities=14% Similarity=0.264 Sum_probs=74.8
Q ss_pred CCCCeEEEEEEEEeecCCCC--CCCCCeEEEEEECC--C--CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEE
Q 035970 2 VPPPRVLEISIVSGHDLALV--SKSMKTYSVAWVDP--E--RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMI 75 (377)
Q Consensus 2 ~~p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p--~--~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~V 75 (377)
.+..+.|.|+|++|++|+.. .+..||||+|++-+ . .+.+|+|.++...||+|||+|.|.|.... ....|.|
T Consensus 10 ~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~---~~v~l~v 86 (135)
T cd08692 10 QAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQE---HGIQFLI 86 (135)
T ss_pred cCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchh---heeEEEE
Confidence 35678899999999999864 35679999998852 2 46788887753357999999999998642 3467889
Q ss_pred EEEEcCcC-CCceeEEEEEEcccc
Q 035970 76 EIYAAAWL-KDALIGSVRVLISHL 98 (377)
Q Consensus 76 eVyD~d~~-~DdlIG~a~IpLs~L 98 (377)
+|||++.. ++++||++.++....
T Consensus 87 ~v~d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 87 KLYSRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred EEEeCCCCcCCceEEEEEECCccC
Confidence 99998854 799999999998764
No 95
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.42 E-value=1.1e-12 Score=101.17 Aligned_cols=80 Identities=33% Similarity=0.542 Sum_probs=67.4
Q ss_pred EEEEEEEeecCCC--CCCCCCeEEEEEECCCC--eEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC
Q 035970 8 LEISIVSGHDLAL--VSKSMKTYSVAWVDPER--KLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL 83 (377)
Q Consensus 8 LeVtVISAkdL~~--~~g~~DPYVvV~L~p~~--k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~ 83 (377)
|+|+|++|++|.. ..+..+|||++.+.+.. .++|++..+ +.+|.|||+|.|.+....+ ..|.|+|||.+..
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~-~~~P~w~e~~~~~~~~~~~----~~l~~~V~~~~~~ 75 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKN-TSNPVWNEEFEFPLDDPDL----DSLSFEVWDKDSF 75 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSS-BSSEEEEEEEEEEESHGCG----TEEEEEEEEETSS
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeec-cccceeeeeeeeeeecccc----cceEEEEEECCCC
Confidence 7999999999975 35689999999998644 488998875 6999999999999877643 4599999999976
Q ss_pred C-CceeEEEE
Q 035970 84 K-DALIGSVR 92 (377)
Q Consensus 84 ~-DdlIG~a~ 92 (377)
+ |++||++.
T Consensus 76 ~~~~~iG~~~ 85 (85)
T PF00168_consen 76 GKDELIGEVK 85 (85)
T ss_dssp SSEEEEEEEE
T ss_pred CCCCEEEEEC
Confidence 5 99999874
No 96
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.36 E-value=1.1e-11 Score=102.85 Aligned_cols=90 Identities=23% Similarity=0.255 Sum_probs=69.8
Q ss_pred EEEEEeecCCCC--CCCCCeEEEEEECCC-----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCc
Q 035970 10 ISIVSGHDLALV--SKSMKTYSVAWVDPE-----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAW 82 (377)
Q Consensus 10 VtVISAkdL~~~--~g~~DPYVvV~L~p~-----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~ 82 (377)
+-.++|++|+.. .+.+||||++++.+. ..++|+++++ +.||+|| +|.|.+....-.+....|.|+|||++.
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~-t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~ 81 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKN-TLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS 81 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEecc-CCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC
Confidence 445799999743 578999999998643 2589999875 7999999 688876432100125789999999996
Q ss_pred C-CCceeEEEEEEcccccCC
Q 035970 83 L-KDALIGSVRVLISHLFGT 101 (377)
Q Consensus 83 ~-~DdlIG~a~IpLs~L~~~ 101 (377)
. +|++||++.++|.+|...
T Consensus 82 ~~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 82 SGKHDLIGEFETTLDELLKS 101 (110)
T ss_pred CCCCcEEEEEEEEHHHHhcC
Confidence 6 689999999999999854
No 97
>PLN02223 phosphoinositide phospholipase C
Probab=99.35 E-value=9.2e-12 Score=130.23 Aligned_cols=105 Identities=22% Similarity=0.353 Sum_probs=84.7
Q ss_pred CeEEEEEEEEeecCC-CC------CCCCCeEEEEEECC---C-CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceE
Q 035970 5 PRVLEISIVSGHDLA-LV------SKSMKTYSVAWVDP---E-RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAI 73 (377)
Q Consensus 5 ~g~LeVtVISAkdL~-~~------~g~~DPYVvV~L~p---~-~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L 73 (377)
..+|.|+|++|+++. +. ....||||+|.|.+ + .+.+|.| .+++.||+|||+|.|.|..+.| ..|
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v-~nNg~nPvWne~F~F~i~~PEL----AlL 482 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTV-KNNEWKPTWGEEFTFPLTYPDL----ALI 482 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEe-CCCCcCceecceeEEEEEccCc----eEE
Confidence 367999999999874 21 23579999999963 1 3567765 4568999999999999988755 789
Q ss_pred EEEEEEcCc-CCCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCc
Q 035970 74 MIEIYAAAW-LKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRP 124 (377)
Q Consensus 74 ~VeVyD~d~-~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~ 124 (377)
.|+|+|+|. ..|+|||++.+|+.+|.++.+ +++|++..|..
T Consensus 483 rf~V~D~D~~~~ddfiGQ~~LPv~~Lr~GyR----------~VpL~~~~g~~ 524 (537)
T PLN02223 483 SFEVYDYEVSTADAFCGQTCLPVSELIEGIR----------AVPLYDERGKA 524 (537)
T ss_pred EEEEEecCCCCCCcEEEEEecchHHhcCCce----------eEeccCCCcCC
Confidence 999999996 468999999999999998864 67888887754
No 98
>PLN02952 phosphoinositide phospholipase C
Probab=99.31 E-value=1.9e-11 Score=129.82 Aligned_cols=115 Identities=19% Similarity=0.272 Sum_probs=92.3
Q ss_pred CeEEEEEEEEeecCCCCC--------CCCCeEEEEEECC----CCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCce
Q 035970 5 PRVLEISIVSGHDLALVS--------KSMKTYSVAWVDP----ERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSA 72 (377)
Q Consensus 5 ~g~LeVtVISAkdL~~~~--------g~~DPYVvV~L~p----~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~ 72 (377)
...|.|+|++|++|.... ...||||+|.+.+ ..+.+|+++.+ +.||+|||+|.|.+..+.| ..
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~n-N~nPvWnE~F~F~i~~PEL----Al 543 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIED-NWYPAWNEEFSFPLTVPEL----AL 543 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccC-CCCcccCCeeEEEEEcCCc----cE
Confidence 468999999999984221 2359999999964 25678998876 5999999999999887654 68
Q ss_pred EEEEEEEcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcceEEEEEEEE
Q 035970 73 IMIEIYAAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQGILNLGITL 134 (377)
Q Consensus 73 L~VeVyD~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~G~L~LsV~f 134 (377)
|.|+|||+|.. .|+|+|++.|||.+|..+. .+++|++..|...+.+.|-|+|
T Consensus 544 lrf~V~D~D~~~~ddfiGq~~lPv~~Lr~Gy----------R~VpL~~~~G~~l~~a~Llv~f 596 (599)
T PLN02952 544 LRIEVREYDMSEKDDFGGQTCLPVSELRPGI----------RSVPLHDKKGEKLKNVRLLMRF 596 (599)
T ss_pred EEEEEEecCCCCCCCeEEEEEcchhHhcCCc----------eeEeCcCCCCCCCCCEEEEEEE
Confidence 99999999854 6899999999999998875 3778998888776666665555
No 99
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=99.29 E-value=1.6e-11 Score=131.29 Aligned_cols=117 Identities=21% Similarity=0.318 Sum_probs=94.7
Q ss_pred eEEEEEEEEeecCCC-C-----CCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEE
Q 035970 6 RVLEISIVSGHDLAL-V-----SKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMI 75 (377)
Q Consensus 6 g~LeVtVISAkdL~~-~-----~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~V 75 (377)
.+|.|.|++++++.. . +...||||.|.|.+- .+.+|+++++++-||.|+|+|+|+|..++| +.|.|
T Consensus 616 ~tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPEL----AliRF 691 (746)
T KOG0169|consen 616 KTLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPEL----ALIRF 691 (746)
T ss_pred ceeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccce----eEEEE
Confidence 369999999997643 2 135799999999742 567899888889999999999999999876 78999
Q ss_pred EEEEcCcCC-CceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCC--cceEEEEEEEEEe
Q 035970 76 EIYAAAWLK-DALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGR--PQGILNLGITLLD 136 (377)
Q Consensus 76 eVyD~d~~~-DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk--~~G~L~LsV~f~p 136 (377)
+|+|++... |+|+|+.++|+.+|..+++ .++|.+..|. ..-.|.+.|.+.+
T Consensus 692 ~V~d~d~~~~ddF~GQ~tlP~~~L~~GyR----------hVpL~~~~G~~~~~asLfv~i~~~~ 745 (746)
T KOG0169|consen 692 EVHDYDYIGKDDFIGQTTLPVSELRQGYR----------HVPLLSREGEALSSASLFVRIAIVE 745 (746)
T ss_pred EEEecCCCCcccccceeeccHHHhhCcee----------eeeecCCCCccccceeEEEEEEEec
Confidence 999999765 9999999999999998865 5677776664 4556777776653
No 100
>PLN02270 phospholipase D alpha
Probab=99.28 E-value=4e-11 Score=130.03 Aligned_cols=122 Identities=16% Similarity=0.203 Sum_probs=103.7
Q ss_pred CeEEEEEEEEeecCCCC--------------------CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccC
Q 035970 5 PRVLEISIVSGHDLALV--------------------SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDR 64 (377)
Q Consensus 5 ~g~LeVtVISAkdL~~~--------------------~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~ 64 (377)
.+.|+|+|+.|++|++. .+.+||||.|.++..+..+|+|+.+...||.|||.|.+++.-
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah- 85 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAH- 85 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeecc-
Confidence 68999999999999741 146799999999988888999987645699999999999974
Q ss_pred CCCCCCceEEEEEEEcCcCCCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcc---eEEEEEEEEEecC
Q 035970 65 FLTDETSAIMIEIYAAAWLKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQ---GILNLGITLLDNT 138 (377)
Q Consensus 65 ~L~~~~s~L~VeVyD~d~~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~---G~L~LsV~f~p~s 138 (377)
..+.|.|.|.|.+.++..+||.+.||+.+|..+.. ...||++...+|++. -.|+|++.|.+..
T Consensus 86 ----~~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~-------i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~ 151 (808)
T PLN02270 86 ----MASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEE-------VDRWVEILDNDKNPIHGGSKIHVKLQYFEVT 151 (808)
T ss_pred ----CcceEEEEEecCCccCceEEEEEEEEHHHhcCCCc-------cccEEeccCCCCCcCCCCCEEEEEEEEEEcc
Confidence 35899999999999999999999999999988643 246999999888653 3899999999865
No 101
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.24 E-value=1.1e-10 Score=91.25 Aligned_cols=91 Identities=30% Similarity=0.449 Sum_probs=75.8
Q ss_pred EEEEEEEEeecCCCCC--CCCCeEEEEEECCC--CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCc
Q 035970 7 VLEISIVSGHDLALVS--KSMKTYSVAWVDPE--RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAW 82 (377)
Q Consensus 7 ~LeVtVISAkdL~~~~--g~~DPYVvV~L~p~--~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~ 82 (377)
.|.|.|+.|++|.... ...+|||++.+.+. ...+|++..+ +.||.|||+|.|.+.... ...|.|+||+...
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~-~~~P~w~e~~~~~~~~~~----~~~l~i~v~~~~~ 75 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKN-TLNPVWNETFEFEVPPPE----LAELEIEVYDKDR 75 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecC-CCCCcccceEEEEecCcc----cCEEEEEEEecCC
Confidence 3789999999997543 47899999999865 5788988765 569999999999998641 5789999999885
Q ss_pred C-CCceeEEEEEEcccccCCc
Q 035970 83 L-KDALIGSVRVLISHLFGTL 102 (377)
Q Consensus 83 ~-~DdlIG~a~IpLs~L~~~~ 102 (377)
. .+.+||.+.+++.++..+.
T Consensus 76 ~~~~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 76 FGRDDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred ccCCceeEEEEEEHHHcccCc
Confidence 5 5899999999999987654
No 102
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.23 E-value=6e-11 Score=125.92 Aligned_cols=115 Identities=16% Similarity=0.223 Sum_probs=90.0
Q ss_pred CeEEEEEEEEeecCC-CC-------CCCCCeEEEEEECC----CCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCce
Q 035970 5 PRVLEISIVSGHDLA-LV-------SKSMKTYSVAWVDP----ERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSA 72 (377)
Q Consensus 5 ~g~LeVtVISAkdL~-~~-------~g~~DPYVvV~L~p----~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~ 72 (377)
..+|.|+|++++++. +. ....||||+|.|.+ ..+.+|+|.. ++.||+|||+|.|++.-+.| ..
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~-n~~nP~Wneef~F~l~vPEL----Al 542 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEY-DTWTPIWNKEFIFPLAVPEL----AL 542 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccC-CCCCCccCCeeEEEEEcCce----eE
Confidence 478999999999863 11 12479999999963 1456888765 47999999999999887755 78
Q ss_pred EEEEEEEcCc-CCCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCc--ceEEEEEEEE
Q 035970 73 IMIEIYAAAW-LKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRP--QGILNLGITL 134 (377)
Q Consensus 73 L~VeVyD~d~-~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~--~G~L~LsV~f 134 (377)
|.|+|+|++. .+|+|||++.||+.+|.++++ .++|++..|.. .-.|.+.+.|
T Consensus 543 lRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~GyR----------~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 543 LRVEVHEHDINEKDDFGGQTCLPVSEIRQGIH----------AVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred EEEEEEECCCCCCCCEEEEEEcchHHhhCccc----------eEeccCCCcCCCCCCeeEEEEEe
Confidence 9999999996 579999999999999998864 56788877743 3356555554
No 103
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.22 E-value=1.5e-10 Score=122.63 Aligned_cols=115 Identities=17% Similarity=0.188 Sum_probs=89.7
Q ss_pred CeEEEEEEEEeecCC----CC----CCCCCeEEEEEECC----CCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCce
Q 035970 5 PRVLEISIVSGHDLA----LV----SKSMKTYSVAWVDP----ERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSA 72 (377)
Q Consensus 5 ~g~LeVtVISAkdL~----~~----~g~~DPYVvV~L~p----~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~ 72 (377)
...|.|+|++++++. .. ....||||+|.|.+ ..+.+|+++.+ +.||.|||+|.|.+..+.| ..
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~n-n~nP~W~e~f~F~i~~PeL----Al 525 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLED-NWIPAWDEVFEFPLTVPEL----AL 525 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCC-CCCcccCCeeEEEEEcCce----eE
Confidence 467999999999852 11 13579999999963 25678998876 4799999999999887655 78
Q ss_pred EEEEEEEcCc-CCCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCc--ceEEEEEEEE
Q 035970 73 IMIEIYAAAW-LKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRP--QGILNLGITL 134 (377)
Q Consensus 73 L~VeVyD~d~-~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~--~G~L~LsV~f 134 (377)
|.|+|+|+|. .+|+|||++.||+..|..+++ .++|++..|.+ .-.|.+.+.|
T Consensus 526 lRf~V~d~D~~~~ddfigq~~lPv~~Lr~GyR----------~V~L~~~~g~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 526 LRLEVHEYDMSEKDDFGGQTCLPVWELSQGIR----------AFPLHSRKGEKYKSVKLLVKVEF 580 (581)
T ss_pred EEEEEEECCCCCCCcEEEEEEcchhhhhCccc----------eEEccCCCcCCCCCeeEEEEEEe
Confidence 9999999985 469999999999999998864 56788877743 3356655554
No 104
>PLN02228 Phosphoinositide phospholipase C
Probab=99.17 E-value=3.3e-10 Score=119.78 Aligned_cols=117 Identities=15% Similarity=0.228 Sum_probs=93.7
Q ss_pred eEEEEEEEEeecCCC----C----CCCCCeEEEEEECCC----CeEEeEeeCCCCCCCee-eeEEEEEeccCCCCCCCce
Q 035970 6 RVLEISIVSGHDLAL----V----SKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSW-NEKFVFRVDDRFLTDETSA 72 (377)
Q Consensus 6 g~LeVtVISAkdL~~----~----~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~W-NEtF~F~V~~~~L~~~~s~ 72 (377)
..|.|+|++|++|.- . ....||||+|.+.+. .+.+|++..+ +.||.| ||+|.|.+..+.| ..
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n-~~nP~W~~e~f~F~~~~pEL----A~ 505 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVD-QWFPIWGNDEFLFQLRVPEL----AL 505 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCC-CCCceECCCeEEEEEEcCce----eE
Confidence 479999999998731 1 124799999998631 4678998765 589999 9999999887655 78
Q ss_pred EEEEEEEcCc-CCCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCc--ceEEEEEEEEEec
Q 035970 73 IMIEIYAAAW-LKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRP--QGILNLGITLLDN 137 (377)
Q Consensus 73 L~VeVyD~d~-~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~--~G~L~LsV~f~p~ 137 (377)
|.|.|+|++. ..|+|||++.|||..|..+++ .++|++..|.. ..+|.+.|.+.+.
T Consensus 506 lRf~V~D~d~~~~d~figq~~lPv~~Lr~GYR----------~VpL~~~~G~~l~~atLfv~~~~~~~ 563 (567)
T PLN02228 506 LWFKVQDYDNDTQNDFAGQTCLPLPELKSGVR----------AVRLHDRAGKAYKNTRLLVSFALDPP 563 (567)
T ss_pred EEEEEEeCCCCCCCCEEEEEEcchhHhhCCee----------EEEccCCCCCCCCCeEEEEEEEEcCc
Confidence 9999999984 579999999999999988764 56888887753 5578888888765
No 105
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.16 E-value=2.5e-10 Score=126.37 Aligned_cols=163 Identities=20% Similarity=0.266 Sum_probs=119.3
Q ss_pred CCeEEEEEEEEeecCCCC----CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEE
Q 035970 4 PPRVLEISIVSGHDLALV----SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYA 79 (377)
Q Consensus 4 p~g~LeVtVISAkdL~~~----~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD 79 (377)
+.|+|+|+|.+|++|+.. .+..|||+++........+|+|.++ +.||+|||+|.+.+.. -++.|.++|||
T Consensus 434 aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~n-t~nPvwNEt~Yi~lns-----~~d~L~LslyD 507 (1227)
T COG5038 434 AIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKN-TLNPVWNETFYILLNS-----FTDPLNLSLYD 507 (1227)
T ss_pred eeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeec-cCCccccceEEEEecc-----cCCceeEEEEe
Confidence 578999999999999742 5899999999987555668999875 8999999999999985 26899999999
Q ss_pred cC-cCCCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcceEEEEEEEEEecCCCCCCcchhhcCCCCccccc
Q 035970 80 AA-WLKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQGILNLGITLLDNTMRSMPLFAELCGAGANFSEV 158 (377)
Q Consensus 80 ~d-~~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~G~L~LsV~f~p~s~~s~P~~~~~~~~~~~~~~~ 158 (377)
.+ ...|+.+|++.++|..|.....+. ..-|+++ .+.+..|.|++.++|.|..- .-.++....|..+..
T Consensus 508 ~n~~~sd~vvG~~~l~L~~L~~~~~~~------ne~~e~~-~~~k~vGrL~yDl~ffp~~e----~k~~~~~s~e~~ed~ 576 (1227)
T COG5038 508 FNSFKSDKVVGSTQLDLALLHQNPVKK------NELYEFL-RNTKNVGRLTYDLRFFPVIE----DKKELKGSVEPLEDS 576 (1227)
T ss_pred ccccCCcceeeeEEechHHhhhccccc------cceeeee-ccCccceEEEEeeeeecccC----CccccccccCCcccC
Confidence 66 567999999999999987765421 2244444 35688999999999998752 111222233333444
Q ss_pred ccccccccCCCccccccccCCcchh
Q 035970 159 SSGANDVMKPETTTAQNSKQSKDDQ 183 (377)
Q Consensus 159 ~vg~r~l~g~~~k~~~~~~s~~~~~ 183 (377)
.+|+....-.+-|.++..++++...
T Consensus 577 n~GI~k~tl~~~~~l~~~~~~~~~~ 601 (1227)
T COG5038 577 NTGILKVTLREVKALDELSSKKDNK 601 (1227)
T ss_pred CcceeEEEeeccccccCccccccce
Confidence 5677666666666666655544333
No 106
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=6.8e-11 Score=124.30 Aligned_cols=114 Identities=22% Similarity=0.363 Sum_probs=90.7
Q ss_pred eEEEEEEEEeecCC--CCCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCc-
Q 035970 6 RVLEISIVSGHDLA--LVSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAW- 82 (377)
Q Consensus 6 g~LeVtVISAkdL~--~~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~- 82 (377)
..+.++|+.|++|. +..|++||||.+.++ ..+.+|+++.. .+||+|||+|.|.+++. ...|.|.|||++.
T Consensus 295 akitltvlcaqgl~akdktg~sdpyvt~qv~-ktkrrtrti~~-~lnpvw~ekfhfechns-----tdrikvrvwded~d 367 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAKDKTGKSDPYVTAQVG-KTKRRTRTIHQ-ELNPVWNEKFHFECHNS-----TDRIKVRVWDEDND 367 (1283)
T ss_pred eeeEEeeeecccceecccCCCCCCcEEEeec-ccchhhHhhhh-ccchhhhhheeeeecCC-----CceeEEEEecCccc
Confidence 35789999999994 567999999999998 46888998875 79999999999999974 5899999999872
Q ss_pred -----------CCCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCC--CCcceEEEEEEEEE
Q 035970 83 -----------LKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPS--GRPQGILNLGITLL 135 (377)
Q Consensus 83 -----------~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~s--Gk~~G~L~LsV~f~ 135 (377)
-.|+|+|+..|.+..|...- .+||.|.... ....|-|+|.|.+.
T Consensus 368 lksklrqkl~resddflgqtvievrtlsgem---------dvwynlekrtdksavsgairlhisve 424 (1283)
T KOG1011|consen 368 LKSKLRQKLTRESDDFLGQTVIEVRTLSGEM---------DVWYNLEKRTDKSAVSGAIRLHISVE 424 (1283)
T ss_pred HHHHHHHHhhhcccccccceeEEEEecccch---------hhhcchhhccchhhccceEEEEEEEE
Confidence 15999999999888775432 3799887532 34677776666653
No 107
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.14 E-value=4.6e-10 Score=86.70 Aligned_cols=87 Identities=28% Similarity=0.535 Sum_probs=73.4
Q ss_pred EEEEEEEeecCCCC--CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC-C
Q 035970 8 LEISIVSGHDLALV--SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL-K 84 (377)
Q Consensus 8 LeVtVISAkdL~~~--~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~-~ 84 (377)
|.|.|++|++|... ....+|||.+.+......+|++... +.||.|||.|.|.+... ....|.|+||+.+.. .
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~-~~~P~w~~~~~~~~~~~----~~~~l~i~v~~~~~~~~ 75 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKN-TLNPVWNETFEFPVLDP----ESDTLTVEVWDKDRFSK 75 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCC-CCCCcccceEEEEccCC----CCCEEEEEEEecCCCCC
Confidence 57999999999653 3578999999998646788988765 68999999999999862 247899999999865 4
Q ss_pred CceeEEEEEEccccc
Q 035970 85 DALIGSVRVLISHLF 99 (377)
Q Consensus 85 DdlIG~a~IpLs~L~ 99 (377)
+.+||.+.+++.++.
T Consensus 76 ~~~ig~~~~~l~~l~ 90 (102)
T cd00030 76 DDFLGEVEIPLSELL 90 (102)
T ss_pred CceeEEEEEeHHHhh
Confidence 899999999999987
No 108
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.10 E-value=6.7e-10 Score=97.70 Aligned_cols=94 Identities=20% Similarity=0.303 Sum_probs=75.1
Q ss_pred EEEEEEEeecCCC----CCC--CCCeEEEEEECC--CCeEEeEeeCCCCCC--CeeeeEEEEEeccCCCC----------
Q 035970 8 LEISIVSGHDLAL----VSK--SMKTYSVAWVDP--ERKLTTRVDQNGLNN--PSWNEKFVFRVDDRFLT---------- 67 (377)
Q Consensus 8 LeVtVISAkdL~~----~~g--~~DPYVvV~L~p--~~k~rTrV~k~gg~N--P~WNEtF~F~V~~~~L~---------- 67 (377)
|+|.|..|+++.. ..| .+||||++|+.+ ..+++|.|+.. +.| |.||+.|.|++......
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyr-slnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~ 80 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYR-SLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH 80 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEe-cCCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence 8999999999642 234 589999999987 36789999875 677 99999999998762210
Q ss_pred ---------CCCceEEEEEEEcCcC-CCceeEEEEEEcccccCCc
Q 035970 68 ---------DETSAIMIEIYAAAWL-KDALIGSVRVLISHLFGTL 102 (377)
Q Consensus 68 ---------~~~s~L~VeVyD~d~~-~DdlIG~a~IpLs~L~~~~ 102 (377)
.....|.|+|||.|.+ .|++||++.++|..+..+.
T Consensus 81 ~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 81 FWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred ccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 1356899999999965 6999999999999886653
No 109
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.00 E-value=9.2e-10 Score=121.99 Aligned_cols=125 Identities=22% Similarity=0.288 Sum_probs=96.7
Q ss_pred CCCCCeEEEEEEEEeecCCC--CCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEE
Q 035970 1 MVPPPRVLEISIVSGHDLAL--VSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIY 78 (377)
Q Consensus 1 ~~~p~g~LeVtVISAkdL~~--~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVy 78 (377)
|....+.|+|.+++|+||+. .++.+||||++.+.....++|+++++ ++||+|||.|.++|... ..+.|.|.|+
T Consensus 1035 mv~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~Kk-tlNPvwNEe~~i~v~~r----~~D~~~i~v~ 1109 (1227)
T COG5038 1035 MVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKK-TLNPVWNEEFTIEVLNR----VKDVLTINVN 1109 (1227)
T ss_pred eecccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhc-cCCCCccccceEeeecc----ccceEEEEEe
Confidence 55678999999999999975 46789999999998766789999887 79999999999999864 3589999999
Q ss_pred EcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCC-CCcceEEEEEEEEEec
Q 035970 79 AAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPS-GRPQGILNLGITLLDN 137 (377)
Q Consensus 79 D~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~s-Gk~~G~L~LsV~f~p~ 137 (377)
|++.. ++++||++.|+|..|..+... ....+|-.+. +...|.++....|.+.
T Consensus 1110 Dwd~~~knd~lg~~~idL~~l~~~~~~-------n~~i~ldgk~~~~~~g~~~~~~~~r~~ 1163 (1227)
T COG5038 1110 DWDSGEKNDLLGTAEIDLSKLEPGGTT-------NSNIPLDGKTFIVLDGTLHPGFNFRSK 1163 (1227)
T ss_pred ecccCCCccccccccccHhhcCcCCcc-------ceeeeccCcceEecccEeecceecchh
Confidence 99964 799999999999999887541 1222322221 2456666666655543
No 110
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.98 E-value=1.4e-09 Score=92.27 Aligned_cols=85 Identities=24% Similarity=0.352 Sum_probs=71.5
Q ss_pred EEEEEEEeecCCCC-----CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCc
Q 035970 8 LEISIVSGHDLALV-----SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAW 82 (377)
Q Consensus 8 LeVtVISAkdL~~~-----~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~ 82 (377)
|.|+|.+|+||... ++.+||||++.++...+.+|++ +.||.|||+|.|.|+. ...+.|.|||...
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~----srnd~WnE~F~i~Vdk------~nEiel~VyDk~~ 70 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP----SRNDRWNEDFEIPVEK------NNEEEVIVYDKGG 70 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC----CCCCcccceEEEEecC------CcEEEEEEEeCCC
Confidence 68999999999642 4688999999999766888876 4799999999999964 4789999999875
Q ss_pred CCCceeEEEEEEcccccCCc
Q 035970 83 LKDALIGSVRVLISHLFGTL 102 (377)
Q Consensus 83 ~~DdlIG~a~IpLs~L~~~~ 102 (377)
-..-.||...|.|++|...-
T Consensus 71 ~~~~Pi~llW~~~sdi~Ee~ 90 (109)
T cd08689 71 DQPVPVGLLWLRLSDIAEEI 90 (109)
T ss_pred CeecceeeehhhHHHHHHHH
Confidence 55679999999999987653
No 111
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.96 E-value=1.9e-09 Score=114.51 Aligned_cols=122 Identities=19% Similarity=0.272 Sum_probs=103.0
Q ss_pred CCeEEEEEEEEeecCCC--CCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcC
Q 035970 4 PPRVLEISIVSGHDLAL--VSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAA 81 (377)
Q Consensus 4 p~g~LeVtVISAkdL~~--~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d 81 (377)
-.+.|.|.|..|++|+. +.|..||||.|.++.....||.++.+ ++.|.|.|.|.|.++..| ..|.|=|||+|
T Consensus 3 ~~~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~k-sL~PF~gEe~~~~iP~~F-----~~l~fYv~D~d 76 (800)
T KOG2059|consen 3 VEQSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEK-SLCPFFGEEFYFEIPRTF-----RYLSFYVWDRD 76 (800)
T ss_pred cccceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhh-hcCCccccceEEecCcce-----eeEEEEEeccc
Confidence 45789999999999964 56899999999999777889998876 799999999999999864 78999999999
Q ss_pred cCCCceeEEEEEEcccccCCcccCCCCCceeEEEEee--CCCCCcceEEEEEEEEEecC
Q 035970 82 WLKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVR--RPSGRPQGILNLGITLLDNT 138 (377)
Q Consensus 82 ~~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lr--r~sGk~~G~L~LsV~f~p~s 138 (377)
..+|+.||.+.|.=.+|..-+. ...|++|. +++...+|+|+|.+.+.+..
T Consensus 77 ~~~D~~IGKvai~re~l~~~~~-------~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~ 128 (800)
T KOG2059|consen 77 LKRDDIIGKVAIKREDLHMYPG-------KDTWFSLQPVDPDSEVQGKVHLELALTEAI 128 (800)
T ss_pred cccccccceeeeeHHHHhhCCC-------CccceeccccCCChhhceeEEEEEEecccc
Confidence 6689999999988777654321 23577777 57888999999999998865
No 112
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.92 E-value=4.7e-09 Score=112.85 Aligned_cols=118 Identities=15% Similarity=0.234 Sum_probs=87.4
Q ss_pred eEEEEEEEEeecCCCCC-CCCCeEEEEEECCC----CeEEeEeeCCCCCCCeee-eEEEEEeccCCCCCCCceEEEEEEE
Q 035970 6 RVLEISIVSGHDLALVS-KSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWN-EKFVFRVDDRFLTDETSAIMIEIYA 79 (377)
Q Consensus 6 g~LeVtVISAkdL~~~~-g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WN-EtF~F~V~~~~L~~~~s~L~VeVyD 79 (377)
-.|.|.||.|+.|...+ +-..|||.|.|-+. .+++|.++.++|.||+|| |+|+|.|.++.+ ..|.|.||+
T Consensus 1065 ~~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~----A~lRF~V~e 1140 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEF----AFLRFVVYE 1140 (1267)
T ss_pred eEEEEEEeeccccccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCce----EEEEEEEec
Confidence 46889999999998665 34569999998542 455666556678999999 999999998754 889999999
Q ss_pred cCcCCC-ceeEEEEEEcccccCCcccCCCCCceeEEEEeeCC-C-CCcceEEEEEEEEEec
Q 035970 80 AAWLKD-ALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRP-S-GRPQGILNLGITLLDN 137 (377)
Q Consensus 80 ~d~~~D-dlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~-s-Gk~~G~L~LsV~f~p~ 137 (377)
.|.++| .|||++++|+..+..+.+ +.+|++. + .-.-..|.+.+...+.
T Consensus 1141 eDmfs~~~FiaqA~yPv~~ik~GfR----------sVpLkN~ySEdlELaSLLv~i~m~~~ 1191 (1267)
T KOG1264|consen 1141 EDMFSDPNFLAQATYPVKAIKSGFR----------SVPLKNGYSEDLELASLLVFIEMRPV 1191 (1267)
T ss_pred ccccCCcceeeeeecchhhhhccce----------eeecccCchhhhhhhhheeeeEeccc
Confidence 998865 599999999999987753 5666643 1 1223344555544443
No 113
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=5.8e-09 Score=107.21 Aligned_cols=92 Identities=23% Similarity=0.311 Sum_probs=74.5
Q ss_pred CCCeEEEEEEEEeecCCC--CCCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEE
Q 035970 3 PPPRVLEISIVSGHDLAL--VSKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIE 76 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~--~~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~Ve 76 (377)
+..+.|.|.|+.|++|+. ..+..||||++++-.. .+.+|.+.+ .+.||+|||+|.|.|+...| ....|.|+
T Consensus 295 p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~-~~~npv~nesf~F~vp~~~l--~~~~l~l~ 371 (421)
T KOG1028|consen 295 PTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKK-KTLNPVFNETFVFDVPPEQL--AEVSLELT 371 (421)
T ss_pred cCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeeccc-CCCCCcccccEEEeCCHHHh--heeEEEEE
Confidence 557899999999999974 4678899999998532 456777765 48999999999999987655 45789999
Q ss_pred EEEcCcC-CCceeEEEEEEccc
Q 035970 77 IYAAAWL-KDALIGSVRVLISH 97 (377)
Q Consensus 77 VyD~d~~-~DdlIG~a~IpLs~ 97 (377)
|||++.+ .+++||.+.+....
T Consensus 372 V~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 372 VWDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred EEEcccccccceeeEEEecCCC
Confidence 9999976 57799988776554
No 114
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.76 E-value=4.4e-09 Score=112.04 Aligned_cols=96 Identities=18% Similarity=0.282 Sum_probs=82.0
Q ss_pred CCeEEEEEEEEeecCC--CCCCCCCeEEEEEECCC------CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEE
Q 035970 4 PPRVLEISIVSGHDLA--LVSKSMKTYSVAWVDPE------RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMI 75 (377)
Q Consensus 4 p~g~LeVtVISAkdL~--~~~g~~DPYVvV~L~p~------~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~V 75 (377)
..+.|.|.|+.|+++. +.+|-+||||+|.+.|. ..++|+|++. +.||+|+|+|.|.|+...+..+...|.|
T Consensus 945 n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~r-tLnPVfDE~FeFsVp~e~c~te~Am~~F 1023 (1103)
T KOG1328|consen 945 NAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSR-TLNPVFDETFEFSVPPEPCSTETAMLHF 1023 (1103)
T ss_pred cccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhc-cccchhhhheeeecCccccccccceEEE
Confidence 3577889999999985 45799999999999875 3568998875 8999999999999998776556789999
Q ss_pred EEEEcCcC-CCceeEEEEEEcccccC
Q 035970 76 EIYAAAWL-KDALIGSVRVLISHLFG 100 (377)
Q Consensus 76 eVyD~d~~-~DdlIG~a~IpLs~L~~ 100 (377)
+|+|+|++ .++|-|++.+.|.++..
T Consensus 1024 TVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1024 TVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred EeeccceecccccchHHHHhhCCCCC
Confidence 99999987 59999999999988743
No 115
>PLN02352 phospholipase D epsilon
Probab=98.67 E-value=1.6e-07 Score=102.06 Aligned_cols=116 Identities=15% Similarity=0.183 Sum_probs=90.7
Q ss_pred CeEEEEEEEEeecCCCC-------CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCC-ceEEEE
Q 035970 5 PRVLEISIVSGHDLALV-------SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDET-SAIMIE 76 (377)
Q Consensus 5 ~g~LeVtVISAkdL~~~-------~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~-s~L~Ve 76 (377)
.++|+++|..|+-+... ....||||.|.++..+..+| . +..||.|||.|.+++.-. . ..|.|.
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~-~~~~p~w~e~f~i~~ah~-----~~~~~~f~ 79 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---S-HEYDRVWNQTFQILCAHP-----LDSTITIT 79 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---C-CCCCCccccceeEEeeee-----cCCcEEEE
Confidence 57899999999855321 11239999999997777777 3 356999999999999742 3 579999
Q ss_pred EEEcCcCCCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCc-c-eEEEEEEEEEecCC
Q 035970 77 IYAAAWLKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRP-Q-GILNLGITLLDNTM 139 (377)
Q Consensus 77 VyD~d~~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~-~-G~L~LsV~f~p~s~ 139 (377)
|.| +..+||.+.||+.+|..+.. ....|+++...+|++ . ..|+|++.|.+...
T Consensus 80 vk~----~~~~ig~~~~p~~~~~~g~~------~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 134 (758)
T PLN02352 80 LKT----KCSILGRFHIQAHQIVTEAS------FINGFFPLIMENGKPNPELKLRFMLWFRPAEL 134 (758)
T ss_pred Eec----CCeEEEEEEEEHHHhhCCCc------ccceEEEcccCCCCCCCCCEEEEEEEEEEhhh
Confidence 988 57899999999999987632 124799999988764 3 48999999999763
No 116
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.48 E-value=2.9e-08 Score=105.98 Aligned_cols=121 Identities=23% Similarity=0.376 Sum_probs=91.7
Q ss_pred CCeEEEEEEEEeecCC--CCCCCCCeEEEEEECCCCe------------------------------EEeEeeCCCCCCC
Q 035970 4 PPRVLEISIVSGHDLA--LVSKSMKTYSVAWVDPERK------------------------------LTTRVDQNGLNNP 51 (377)
Q Consensus 4 p~g~LeVtVISAkdL~--~~~g~~DPYVvV~L~p~~k------------------------------~rTrV~k~gg~NP 51 (377)
|...|.|.+..|+||. +++|-+|||+...+-|..+ +-|.|.+ .+.||
T Consensus 112 P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~-~TLnP 190 (1103)
T KOG1328|consen 112 PSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKK-KTLNP 190 (1103)
T ss_pred CcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhccccc-ccCCc
Confidence 4445667788899984 5678899999987743210 1244444 48999
Q ss_pred eeeeEEEEEeccCCCCCCCceEEEEEEEcCc----------------------------------C---CCceeEEEEEE
Q 035970 52 SWNEKFVFRVDDRFLTDETSAIMIEIYAAAW----------------------------------L---KDALIGSVRVL 94 (377)
Q Consensus 52 ~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~----------------------------------~---~DdlIG~a~Ip 94 (377)
.|+|+|.|.|.+. .+..+++.|||+|. . .|+|+|.+.||
T Consensus 191 kW~EkF~F~IeDv----~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNip 266 (1103)
T KOG1328|consen 191 KWSEKFQFTIEDV----QTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIP 266 (1103)
T ss_pred chhhheeeehhcc----ccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccc
Confidence 9999999999985 57899999999861 0 18999999999
Q ss_pred cccccCCcccCCCCCceeEEEEeeCCC--CCcceEEEEEEEEEec
Q 035970 95 ISHLFGTLTHNSSSSTRYVALQVRRPS--GRPQGILNLGITLLDN 137 (377)
Q Consensus 95 Ls~L~~~~~~~~~~~~~~v~y~Lrr~s--Gk~~G~L~LsV~f~p~ 137 (377)
|.++.+.+- ..|+.|...+ .+.+|.++|.+++...
T Consensus 267 l~EiP~~Gl--------d~WFkLepRS~~S~VqG~~~LklwLsT~ 303 (1103)
T KOG1328|consen 267 LAEIPPDGL--------DQWFKLEPRSDKSKVQGQVKLKLWLSTK 303 (1103)
T ss_pred hhcCCcchH--------HHHhccCcccccccccceEEEEEEEeee
Confidence 999977543 3588877543 4799999999999754
No 117
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.42 E-value=6.9e-07 Score=93.90 Aligned_cols=127 Identities=20% Similarity=0.238 Sum_probs=99.6
Q ss_pred CeEEEEEEEEeecCCCC---CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeee-EEEEEeccCCCCCCCceEEEEEEEc
Q 035970 5 PRVLEISIVSGHDLALV---SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNE-KFVFRVDDRFLTDETSAIMIEIYAA 80 (377)
Q Consensus 5 ~g~LeVtVISAkdL~~~---~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNE-tF~F~V~~~~L~~~~s~L~VeVyD~ 80 (377)
.+.|-|.|..|++|+-. +...|.||.+.+. +..++|.|..+ .+||.||- =|.|.|++..| ....|.|.++|+
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~-n~t~ktdvf~k-slnp~wnsdwfkfevddadl--qdeplqi~lld~ 77 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFA-NTTFKTDVFLK-SLNPQWNSDWFKFEVDDADL--QDEPLQIRLLDH 77 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEec-ccceehhhhhh-hcCCcccccceEEecChhhh--ccCCeeEEEecc
Confidence 37899999999999743 3467999999997 56788998876 79999995 59999999888 456889999999
Q ss_pred CcC-CCceeEEEEEEcccccCCcc-c--CCCCCceeEEEEeeCCCCCcceEEEEEEEEE
Q 035970 81 AWL-KDALIGSVRVLISHLFGTLT-H--NSSSSTRYVALQVRRPSGRPQGILNLGITLL 135 (377)
Q Consensus 81 d~~-~DdlIG~a~IpLs~L~~~~~-~--~~~~~~~~v~y~Lrr~sGk~~G~L~LsV~f~ 135 (377)
+.. -++-||.+.|.+..|.-... + .+....-..|+++.+.=.-.+|+|++-|.+.
T Consensus 78 dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivkvd 136 (1169)
T KOG1031|consen 78 DTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVKVD 136 (1169)
T ss_pred cccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEEEe
Confidence 964 58999999999987653321 0 1223445679999887666899999987764
No 118
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=97.97 E-value=1.6e-05 Score=85.28 Aligned_cols=119 Identities=18% Similarity=0.312 Sum_probs=81.9
Q ss_pred EEEeecCCCC-CCCCCeEEEEEECCC---CeEEeEeeCCCCCCCeeeeEEEEEeccCC----------CCC-CCceEEEE
Q 035970 12 IVSGHDLALV-SKSMKTYSVAWVDPE---RKLTTRVDQNGLNNPSWNEKFVFRVDDRF----------LTD-ETSAIMIE 76 (377)
Q Consensus 12 VISAkdL~~~-~g~~DPYVvV~L~p~---~k~rTrV~k~gg~NP~WNEtF~F~V~~~~----------L~~-~~s~L~Ve 76 (377)
+++++++.+. ++.+||||++...+. ...+|++.++ +.||.|||.|.|.+.... ..+ .-..|.++
T Consensus 137 ~L~~r~~~P~~~~~~dp~~~v~~~g~~~~~~~~T~~~kk-t~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~ 215 (800)
T KOG2059|consen 137 VLKTRQGLPIINGQCDPFARVTLCGPSKLKEKKTKVKKK-TTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVD 215 (800)
T ss_pred hhhhcccCceeCCCCCcceEEeecccchhhccccceeee-ccCcchhhheeeeeccccccccchhcCcccCCceeeEEEe
Confidence 3444444332 567999999987542 2357888776 789999999999988651 000 12568899
Q ss_pred EEEcC--cCCCceeEEEEEEcccccCCcccCCCCCceeEEEEeeC-C------CCCcceEEEEEEEEEecC
Q 035970 77 IYAAA--WLKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRR-P------SGRPQGILNLGITLLDNT 138 (377)
Q Consensus 77 VyD~d--~~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr-~------sGk~~G~L~LsV~f~p~s 138 (377)
+|+.. ...++|+|++.+|+..+..... ...||-|+. + ++...|.+++.+++....
T Consensus 216 lW~~~~~~~~~~FlGevrv~v~~~~~~s~-------p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D~ 279 (800)
T KOG2059|consen 216 LWNDLNLVINDVFLGEVRVPVDVLRQKSS-------PAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTEDH 279 (800)
T ss_pred eccchhhhhhhhhceeEEeehhhhhhccC-------ccceEEEecCCCcccCCCCCCccceeeeEEeeece
Confidence 99854 3469999999999998763322 135887773 2 234678999999987654
No 119
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.73 E-value=2.5e-05 Score=87.60 Aligned_cols=104 Identities=18% Similarity=0.327 Sum_probs=80.2
Q ss_pred CeEEEEEEEEeecCCCC--CCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEE-eccCCCCCCCceEEEEE
Q 035970 5 PRVLEISIVSGHDLALV--SKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFR-VDDRFLTDETSAIMIEI 77 (377)
Q Consensus 5 ~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~-V~~~~L~~~~s~L~VeV 77 (377)
.++|.|-|..|++|.-. +..+||||+.++.|+ .+++|+|+++ +.||+|||.+.+. .+...+ .+..|.+.|
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrk-t~~PTfnE~LvY~g~p~~~l--~qReLQ~sV 1599 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRK-TRNPTFNEMLVYDGFPKEIL--QQRELQVSV 1599 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccc-cCCCchhhheeecCCchhhh--hhheeeeee
Confidence 46788999999999533 457899999999875 5788999986 8999999998876 333223 357899999
Q ss_pred EEcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEee
Q 035970 78 YAAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVR 118 (377)
Q Consensus 78 yD~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lr 118 (377)
|..+.+ .+.|+|.+.|+|.++..... ...||+|-
T Consensus 1600 ls~~~~~en~~lg~v~i~L~~~~l~kE-------~~~Wy~lg 1634 (1639)
T KOG0905|consen 1600 LSNGGLLENVFLGGVNIPLLKVDLLKE-------SVGWYNLG 1634 (1639)
T ss_pred ecccceeeeeeeeeeecchhhcchhhh-------hcceeecc
Confidence 998854 68999999999998754322 12588764
No 120
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=97.65 E-value=0.00017 Score=79.14 Aligned_cols=102 Identities=26% Similarity=0.371 Sum_probs=78.4
Q ss_pred eEEEEEEEEeecCCCCCCCCCeEEEEEEC--CC----CeEEeEeeCCCCCCCeeeeE-EEEE-eccCCCCCCCceEEEEE
Q 035970 6 RVLEISIVSGHDLALVSKSMKTYSVAWVD--PE----RKLTTRVDQNGLNNPSWNEK-FVFR-VDDRFLTDETSAIMIEI 77 (377)
Q Consensus 6 g~LeVtVISAkdL~~~~g~~DPYVvV~L~--p~----~k~rTrV~k~gg~NP~WNEt-F~F~-V~~~~L~~~~s~L~VeV 77 (377)
.+|.|+||+++=|.+. +...||.|.+- |. ..++|++...++.||+|||. |.|. |--+.| ..|.|.|
T Consensus 703 ~t~sV~VISgqFLSdr--kvgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeL----A~lRiav 776 (1189)
T KOG1265|consen 703 ATLSVTVISGQFLSDR--KVGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPEL----ASLRIAV 776 (1189)
T ss_pred eeEEEEEEeeeecccc--ccCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccch----hheeeee
Confidence 5789999999988653 45699999874 32 45789988888999999965 8886 443333 7899999
Q ss_pred EEcCcCCCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcce
Q 035970 78 YAAAWLKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQG 126 (377)
Q Consensus 78 yD~d~~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~G 126 (377)
|++ +.+|||+-.+|+..|.++++ .+.||...+.+.+
T Consensus 777 yeE---ggK~ig~RIlpvd~l~~GYr----------hv~LRse~Nqpl~ 812 (1189)
T KOG1265|consen 777 YEE---GGKFIGQRILPVDGLNAGYR----------HVCLRSESNQPLT 812 (1189)
T ss_pred ecc---CCceeeeeccchhcccCcce----------eEEecCCCCCccc
Confidence 997 47899999999999988865 3456666665544
No 121
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.00093 Score=71.73 Aligned_cols=106 Identities=16% Similarity=0.271 Sum_probs=80.1
Q ss_pred eEEEEEEEEeecCC-CCCCCCCeEEEEEE-CC-----CCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEE
Q 035970 6 RVLEISIVSGHDLA-LVSKSMKTYSVAWV-DP-----ERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIY 78 (377)
Q Consensus 6 g~LeVtVISAkdL~-~~~g~~DPYVvV~L-~p-----~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVy 78 (377)
+.+.|.|+.|.||+ ..+|...|||.|.+ +| .+++.|+.. .++-.|.+||+|.|-+....- -+...|.|.|.
T Consensus 1125 hkvtvkvvaandlkwqtsgmFrPFVEV~ivGP~lsDKKRK~~TKtK-snnWaPKyNEtF~f~Lg~e~~-Pe~YEL~~~VK 1202 (1283)
T KOG1011|consen 1125 HKVTVKVVAANDLKWQTSGMFRPFVEVHIVGPHLSDKKRKFSTKTK-SNNWAPKYNETFHFFLGNEGG-PEHYELQFCVK 1202 (1283)
T ss_pred ceEEEEEEecccccchhccccccceEEEEecCcccchhhhcccccc-CCCcCcccCceeEEEeccCCC-CceEEEEEeeh
Confidence 56789999999997 44678899999987 33 256677764 456789999999999875421 13467888888
Q ss_pred EcCcCC-CceeEEEEEEcccccCCcccCCCCCceeEEEEeeCC
Q 035970 79 AAAWLK-DALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRP 120 (377)
Q Consensus 79 D~d~~~-DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~ 120 (377)
|+=+.+ |..+|.+.++|.++...+. .-.|++|-+.
T Consensus 1203 DYCFAReDRvvGl~VlqL~~va~kGS-------~a~W~pLgrr 1238 (1283)
T KOG1011|consen 1203 DYCFAREDRVVGLAVLQLRSVADKGS-------CACWVPLGRR 1238 (1283)
T ss_pred hheeecccceeeeeeeehhhHhhcCc-------eeEeeecccc
Confidence 887765 7899999999999987654 2368888643
No 122
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.00034 Score=69.95 Aligned_cols=86 Identities=17% Similarity=0.232 Sum_probs=69.6
Q ss_pred CeEEEEEEEEeecCC--CCCCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEE
Q 035970 5 PRVLEISIVSGHDLA--LVSKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIY 78 (377)
Q Consensus 5 ~g~LeVtVISAkdL~--~~~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVy 78 (377)
..-|.|+++.+..|. +.++-+||||..++.++ .+++|++.++ +.||.||+.|.|.+.+..| ....+.|.||
T Consensus 232 ~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~-t~~p~fd~~~~~~i~pgdL--a~~kv~lsvg 308 (362)
T KOG1013|consen 232 TPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKK-TLNPEFDEEFFYDIGPGDL--AYKKVALSVG 308 (362)
T ss_pred CCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhc-cCCccccccccccCCccch--hcceEEEeec
Confidence 346889999988885 44688999999999764 4577887665 8999999999999998877 4678999999
Q ss_pred EcCcC-CCceeEEEEE
Q 035970 79 AAAWL-KDALIGSVRV 93 (377)
Q Consensus 79 D~d~~-~DdlIG~a~I 93 (377)
|++.- ..+++|-...
T Consensus 309 d~~~G~s~d~~GG~~~ 324 (362)
T KOG1013|consen 309 DYDIGKSNDSIGGSML 324 (362)
T ss_pred ccCCCcCccCCCcccc
Confidence 99865 6788886543
No 123
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=97.27 E-value=0.00017 Score=73.86 Aligned_cols=125 Identities=18% Similarity=0.225 Sum_probs=92.5
Q ss_pred eEEEEEEEEeecCCCCCC--CCCeEEEEEEC----CCCeEEeEeeCCCCCCCeeeeEEEEEeccCC-CCC------CCce
Q 035970 6 RVLEISIVSGHDLALVSK--SMKTYSVAWVD----PERKLTTRVDQNGLNNPSWNEKFVFRVDDRF-LTD------ETSA 72 (377)
Q Consensus 6 g~LeVtVISAkdL~~~~g--~~DPYVvV~L~----p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~-L~~------~~s~ 72 (377)
..|++.|++++++.-.+| ..|.|+.+.+. ..++.+|.|+++ +..|.|+|.|.+.+.... ++. ....
T Consensus 367 ~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~-t~SPdfde~fklni~rg~~~nr~fqR~fkr~g 445 (523)
T KOG3837|consen 367 QELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKV-TPSPDFDEDFKLNIRRGPGLNREFQRRFKRLG 445 (523)
T ss_pred hHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeC-CCCCCcccceeeeccCCCcccHHHHHHHHhcC
Confidence 467888899988875555 35789988763 235778888875 789999999999987621 110 1346
Q ss_pred EEEEEEEcCc-C-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcceEEEEEEEEEecC
Q 035970 73 IMIEIYAAAW-L-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQGILNLGITLLDNT 138 (377)
Q Consensus 73 L~VeVyD~d~-~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~G~L~LsV~f~p~s 138 (377)
+.|+||++.- + +|.|+|++.|-|.-|...-. + .-.|+|.+...-..|.|.+.|++....
T Consensus 446 ~kfeifhkggf~rSdkl~gt~nikle~Len~ce------i-~e~~~l~DGRK~vGGkLevKvRiR~Pi 506 (523)
T KOG3837|consen 446 KKFEIFHKGGFNRSDKLTGTGNIKLEILENMCE------I-CEYLPLKDGRKAVGGKLEVKVRIRQPI 506 (523)
T ss_pred eeEEEeeccccccccceeceeeeeehhhhcccc------h-hhceeccccccccCCeeEEEEEEeccc
Confidence 8999999984 3 69999999999988765421 1 246777766556889999999998764
No 124
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.25 E-value=0.00043 Score=61.25 Aligned_cols=94 Identities=20% Similarity=0.340 Sum_probs=69.1
Q ss_pred EEEEEEEeecCCCC-------C--------CCCCeEEEEEEC--C-CCeEEeEeeCCCCCCCeeeeEEEEEec-------
Q 035970 8 LEISIVSGHDLALV-------S--------KSMKTYSVAWVD--P-ERKLTTRVDQNGLNNPSWNEKFVFRVD------- 62 (377)
Q Consensus 8 LeVtVISAkdL~~~-------~--------g~~DPYVvV~L~--p-~~k~rTrV~k~gg~NP~WNEtF~F~V~------- 62 (377)
|.|.|+.|-+|+.. . =-.++||.+.+. + ....+|+++.. +-.|.||..|.|+++
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVAr-SFcPeF~Hh~Efpc~lv~~~~~ 79 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVAR-SFCPEFNHHVEFPCNLVVQRNS 79 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhh-hcCCCccceEEEecccEEEcCC
Confidence 56889999999521 0 135899999853 3 35678887765 789999999999987
Q ss_pred -cC-CCC--CCCceEEEEEEEcCc-----------CCCceeEEEEEEcccccCCc
Q 035970 63 -DR-FLT--DETSAIMIEIYAAAW-----------LKDALIGSVRVLISHLFGTL 102 (377)
Q Consensus 63 -~~-~L~--~~~s~L~VeVyD~d~-----------~~DdlIG~a~IpLs~L~~~~ 102 (377)
+. .|+ .+...|.|+||+... .+|-+||.+.||+.+|+...
T Consensus 80 Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~r 134 (143)
T cd08683 80 GEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKR 134 (143)
T ss_pred CccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcc
Confidence 20 111 145789999999752 25789999999999998753
No 125
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.17 E-value=0.00022 Score=79.09 Aligned_cols=86 Identities=15% Similarity=0.239 Sum_probs=68.8
Q ss_pred EEEEEEEEeecCC--CCCCCCCeEEEEEECCCC-eEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC
Q 035970 7 VLEISIVSGHDLA--LVSKSMKTYSVAWVDPER-KLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL 83 (377)
Q Consensus 7 ~LeVtVISAkdL~--~~~g~~DPYVvV~L~p~~-k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~ 83 (377)
.++|.|+.|.+|. +.+|..|||+.+.++... .-++..+. ++.||++++-|.+...-+. ...|.++|||+|.+
T Consensus 614 LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip-~tlnPVfgkmfel~~~lp~----ek~l~v~vyd~D~~ 688 (1105)
T KOG1326|consen 614 LVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIP-NTLNPVFGKMFELECLLPF----EKDLIVEVYDHDLE 688 (1105)
T ss_pred eEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCc-CCCCcHHHHHHHhhcccch----hhcceeEEEEeecc
Confidence 5679999999996 457899999999998532 12333344 5899999999998877653 47899999999965
Q ss_pred -CCceeEEEEEEccc
Q 035970 84 -KDALIGSVRVLISH 97 (377)
Q Consensus 84 -~DdlIG~a~IpLs~ 97 (377)
+|+.||+.+|.|.+
T Consensus 689 ~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 689 AQDEKIGETTIDLEN 703 (1105)
T ss_pred cccchhhceehhhhh
Confidence 59999999999886
No 126
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.03 E-value=0.00012 Score=73.07 Aligned_cols=129 Identities=18% Similarity=0.247 Sum_probs=87.0
Q ss_pred CeEEEEEEEEeecCCCC--CCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEE--EeccCCCCCCCceEEEE
Q 035970 5 PRVLEISIVSGHDLALV--SKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVF--RVDDRFLTDETSAIMIE 76 (377)
Q Consensus 5 ~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F--~V~~~~L~~~~s~L~Ve 76 (377)
.+.|+.+|..|++|+.. .+..|||+.+.+.|. .+.+|++.. ++.||.|||+... ...+.. ....+.+.
T Consensus 92 ~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~-n~lN~~w~etev~~~i~~~~~---~~K~~Rk~ 167 (362)
T KOG1013|consen 92 SRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTR-NTLNPEWNETEVYEGITDDDT---HLKVLRKV 167 (362)
T ss_pred hhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhc-cCcCcceeccceecccccchh---hhhhhhee
Confidence 46788999999999754 688999999999864 346666654 5899999987554 344331 24567788
Q ss_pred EEEcCc-CCCceeEEEEEEcccccCCcccCCCCCceeEEEEeeC---CCCCcceEEEEEEEEEecC
Q 035970 77 IYAAAW-LKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRR---PSGRPQGILNLGITLLDNT 138 (377)
Q Consensus 77 VyD~d~-~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr---~sGk~~G~L~LsV~f~p~s 138 (377)
|.|.+. ..++++|+.++++..|.+.........+. ..++..+ ..-..+|.|.+++.|....
T Consensus 168 vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~-~~lp~~rad~~~~E~rg~i~isl~~~s~~ 232 (362)
T KOG1013|consen 168 VCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLE-KSLPSERADRDEDEERGAILISLAYSSTT 232 (362)
T ss_pred eccCcccccccCcccchhhhhccChhhcchhhhhhh-ccCCcccccccchhhccceeeeeccCcCC
Confidence 888774 46899999999999887764421111110 1111111 1225788899888876654
No 127
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=96.98 E-value=0.00094 Score=55.72 Aligned_cols=89 Identities=19% Similarity=0.269 Sum_probs=65.4
Q ss_pred EEEEEEeecCCCCC---CCCCeEEEE--EECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC
Q 035970 9 EISIVSGHDLALVS---KSMKTYSVA--WVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL 83 (377)
Q Consensus 9 eVtVISAkdL~~~~---g~~DPYVvV--~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~ 83 (377)
-|+|+.++||.-++ ..+..|++- .+......+|.+ +.|..||+++|+|.|.+..-.| ..-.|.|.||. ..-
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~-rrgs~d~~f~ETFVFqi~l~qL--~~V~L~fsv~~-~~~ 77 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSA-KEGSNDIEFMETFVFAIKLQNL--QTVRLVFKIQT-QTP 77 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchh-hcCCCChhHHHHHHHHHHHhhc--cceEEEEEeec-cCC
Confidence 37899999995332 345667764 444445566765 4568999999999999886544 55778999998 445
Q ss_pred CCceeEEEEEEcccccCC
Q 035970 84 KDALIGSVRVLISHLFGT 101 (377)
Q Consensus 84 ~DdlIG~a~IpLs~L~~~ 101 (377)
+.+.||.+.+.|.++-..
T Consensus 78 RKe~iG~~sL~l~s~gee 95 (103)
T cd08684 78 RKRTIGECSLSLRTLSTQ 95 (103)
T ss_pred ccceeeEEEeecccCCHH
Confidence 789999999999887543
No 128
>PLN02964 phosphatidylserine decarboxylase
Probab=96.96 E-value=0.0014 Score=71.22 Aligned_cols=86 Identities=14% Similarity=0.269 Sum_probs=65.9
Q ss_pred CeEEEEEEEEeecCCCCCCCCCeEEEE-EECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC
Q 035970 5 PRVLEISIVSGHDLALVSKSMKTYSVA-WVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL 83 (377)
Q Consensus 5 ~g~LeVtVISAkdL~~~~g~~DPYVvV-~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~ 83 (377)
.+.+.|+|++|+ ....|+|.++ +++ .+.++|.+.++ +.||+||+...|.|.+... ....|.|||.+.+
T Consensus 53 ~~~~~~~~~~~~-----~~~~~~~~~~~~~g-~~~f~t~~~~~-~~~p~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 121 (644)
T PLN02964 53 SGIALLTLVGAE-----MKFKDKWLACVSFG-EQTFRTETSDS-TDKPVWNSEKKLLLEKNGP----HLARISVFETNRL 121 (644)
T ss_pred cCeEEEEeehhh-----hccCCcEEEEEEec-ceeeeeccccc-cCCcccchhhceEeccCCc----ceEEEEEEecCCC
Confidence 356778888886 1223776655 555 68899998765 8999999999999987532 4469999999865
Q ss_pred -CCceeEEEEEEcccccCC
Q 035970 84 -KDALIGSVRVLISHLFGT 101 (377)
Q Consensus 84 -~DdlIG~a~IpLs~L~~~ 101 (377)
.+++++.+.++|.++...
T Consensus 122 s~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 122 SKNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred CHHHhhhheeecHhhccHH
Confidence 699999999988877654
No 129
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.72 E-value=0.0014 Score=66.53 Aligned_cols=109 Identities=13% Similarity=0.216 Sum_probs=80.5
Q ss_pred CCCCCeEEEEEEEEeecCCCC---CCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceE
Q 035970 1 MVPPPRVLEISIVSGHDLALV---SKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAI 73 (377)
Q Consensus 1 ~~~p~g~LeVtVISAkdL~~~---~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L 73 (377)
+|...+.|+|.||.|++|-.. .-.++|||.|++.+. .+.+|+...+ +.+|.+.+...|.-.++ ...|
T Consensus 264 ~~d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~k-T~~plyqq~l~f~~sp~-----~k~L 337 (405)
T KOG2060|consen 264 LMDSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARK-TLDPLYQQQLSFDQSPP-----GKYL 337 (405)
T ss_pred hhcccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccc-cCchhhhhhhhhccCCC-----ccEE
Confidence 355678999999999999432 236799999998643 4567887765 67777777788877663 6899
Q ss_pred EEEEEEc-CcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCC
Q 035970 74 MIEIYAA-AWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPS 121 (377)
Q Consensus 74 ~VeVyD~-d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~s 121 (377)
.+.||.. ... .+.|+|.+.|-+.+|... ..+...||.|...+
T Consensus 338 q~tv~gdygRmd~k~fmg~aqi~l~eL~ls------~~~~igwyKlfgss 381 (405)
T KOG2060|consen 338 QGTVWGDYGRMDHKSFMGVAQIMLDELNLS------SSPVIGWYKLFGSS 381 (405)
T ss_pred EEEEeccccccchHHHhhHHHHHhhhhccc------cccceeeeeccCCc
Confidence 9999963 333 478999999999988554 23456899888543
No 130
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=96.45 E-value=0.16 Score=43.81 Aligned_cols=125 Identities=14% Similarity=0.156 Sum_probs=77.2
Q ss_pred eEEEEEEEEeecCCCCCCCCCeEEEEEECCCC--eEEeEeeCCCCCCCeeeeEEEEEecc----CCCCCCCceEEEEEEE
Q 035970 6 RVLEISIVSGHDLALVSKSMKTYSVAWVDPER--KLTTRVDQNGLNNPSWNEKFVFRVDD----RFLTDETSAIMIEIYA 79 (377)
Q Consensus 6 g~LeVtVISAkdL~~~~g~~DPYVvV~L~p~~--k~rTrV~k~gg~NP~WNEtF~F~V~~----~~L~~~~s~L~VeVyD 79 (377)
-.+.|+|+...+++.. ....||....+... ..+|......+..-.|||.|.|.+.- ..-.-+...+.|.|+.
T Consensus 7 f~~~l~i~~l~~~p~~--~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~ 84 (143)
T PF10358_consen 7 FQFDLTIHELENLPSS--NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFE 84 (143)
T ss_pred EEEEEEEEEeECcCCC--CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEE
Confidence 4578899999988762 22333333333222 34554443335678899999987542 1000134568888888
Q ss_pred cCcCCC-ceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcceEEEEEEEEEecC
Q 035970 80 AAWLKD-ALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQGILNLGITLLDNT 138 (377)
Q Consensus 80 ~d~~~D-dlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~G~L~LsV~f~p~s 138 (377)
....+. ..+|.+.|.|.++..... ......++|... .+....|+|+|.+....
T Consensus 85 ~~~~~~k~~lG~~~inLaey~~~~~-----~~~~~~~~l~~~-~~~~a~L~isi~~~~~~ 138 (143)
T PF10358_consen 85 VDGSGKKKVLGKVSINLAEYANEDE-----EPITVRLLLKKC-KKSNATLSISISLSELR 138 (143)
T ss_pred ecCCCccceEEEEEEEHHHhhCcCC-----CcEEEEEeCccC-CCCCcEEEEEEEEEECc
Confidence 753333 599999999999987531 123456666543 35677888888887653
No 131
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=95.77 E-value=0.065 Score=49.10 Aligned_cols=74 Identities=22% Similarity=0.329 Sum_probs=50.1
Q ss_pred eEEEEEEEEeecCCCCCCCCCeEEEEEE-CCCC----eEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEc
Q 035970 6 RVLEISIVSGHDLALVSKSMKTYSVAWV-DPER----KLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAA 80 (377)
Q Consensus 6 g~LeVtVISAkdL~~~~g~~DPYVvV~L-~p~~----k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~ 80 (377)
..+.|+|+++.+|.-.....+.||.+.| ++.. ...|+... ...++.|||.+.|++.-..|- -.+.|.|.||+.
T Consensus 8 ~~f~i~i~~~~~~~~~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~-~~~~~~Wnewl~F~I~i~dLP-r~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNAAERTMKVGVQAGLFHGGESLCKTVKTSEVS-GKNDPVWNETLEFDINVCDLP-RMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCccCCCCceEEEEEEEEECCEEccCceEccccC-CCCccccceeEEcccchhcCC-hhHeEEEEEEEe
Confidence 4689999999999642345678888765 2222 23454333 246799999999986654431 257899999986
Q ss_pred C
Q 035970 81 A 81 (377)
Q Consensus 81 d 81 (377)
.
T Consensus 86 ~ 86 (173)
T cd08693 86 S 86 (173)
T ss_pred c
Confidence 4
No 132
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=95.60 E-value=0.089 Score=47.73 Aligned_cols=88 Identities=15% Similarity=0.164 Sum_probs=57.8
Q ss_pred eEEEEEEEEeecCCCCCCCCCeEEEEEE-CCCCe----EEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEc
Q 035970 6 RVLEISIVSGHDLALVSKSMKTYSVAWV-DPERK----LTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAA 80 (377)
Q Consensus 6 g~LeVtVISAkdL~~~~g~~DPYVvV~L-~p~~k----~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~ 80 (377)
..++|+|+.|.++.-. ...|-||.+.+ ++... ..|+-.. ..++.|||-+.|++.-..|- -.+.|.|.||+.
T Consensus 8 ~~~~v~i~~~~~~~~~-~~~~l~V~v~l~~g~~~L~~pv~T~~v~--~~~~~WnEwL~fpI~i~dLP-r~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVN-DIDKIYVRTGIYHGGEPLCDNVNTQRVP--CSNPRWNEWLDYDIYIPDLP-RSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCC-CcCeEEEEEEEEECCEEccCeeEecccC--CCCCccceeEEcccchhcCC-hhheEEEEEEEE
Confidence 4688999999988532 34688988865 22221 2333222 36899999999987654441 257899999996
Q ss_pred CcC-----CCceeEEEEEEccc
Q 035970 81 AWL-----KDALIGSVRVLISH 97 (377)
Q Consensus 81 d~~-----~DdlIG~a~IpLs~ 97 (377)
... ....||.+.++|=+
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred ecccCCCCceEEEEEEEEEEEC
Confidence 531 12468888776654
No 133
>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]
Probab=95.57 E-value=0.0023 Score=64.78 Aligned_cols=65 Identities=17% Similarity=0.142 Sum_probs=59.5
Q ss_pred CCCccccccccCCcchhhhhhhccccCCcchhhhhhccccccccccccc--------cccCCCcccccccCCcc
Q 035970 167 KPETTTAQNSKQSKDDQELERVLKPKDNSLSKAKLRRSQSDKTDLTSED--------YSKNSSHQAQQPTGTGS 232 (377)
Q Consensus 167 g~~~k~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~s~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 232 (377)
|...|+.|++|.++...|+|++++ |..-+.+-++++|..|++.|..=+ |+||++++.|+|++|.+
T Consensus 36 G~fGkV~~Vrk~dt~kiYAmKvl~-K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt~~kLylVld~~~ 108 (357)
T KOG0598|consen 36 GSFGKVFQVRKKDTGKIYAMKVLK-KKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSFQTEEKLYLVLDYLN 108 (357)
T ss_pred cCCceEEEEEEcccCceeehhhhh-hhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEecccCCeEEEEEeccC
Confidence 778999999999999999999999 677888889999999999998844 89999999999999974
No 134
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=94.98 E-value=0.45 Score=43.34 Aligned_cols=130 Identities=17% Similarity=0.243 Sum_probs=86.5
Q ss_pred CCCeEEEEEEEEeecCCCC-C---CCCCeEEEEEEC-CCCeEEeEeeCCCCCCCeeeeEEEEEeccCCC---------CC
Q 035970 3 PPPRVLEISIVSGHDLALV-S---KSMKTYSVAWVD-PERKLTTRVDQNGLNNPSWNEKFVFRVDDRFL---------TD 68 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~~-~---g~~DPYVvV~L~-p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L---------~~ 68 (377)
+....|+|.|+.++-.-+. . +..+.-.++.++ ..++++|+.+.- .-+|.++|.|.|+++.... -.
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~-~~eP~f~e~Flf~l~~~~~~~~~~~~~lls 84 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPC-ACEPDFNEEFLFELPRDSFGAGSTATTLLS 84 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCccc-ccCCCCCCcEEEEecccccccccchhHhhc
Confidence 3467899999998765321 1 455566666654 458899987654 7899999999999986531 11
Q ss_pred CCceEEEEEEEcCcCC-CceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCC---CcceEEEEEEEEEecC
Q 035970 69 ETSAIMIEIYAAAWLK-DALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSG---RPQGILNLGITLLDNT 138 (377)
Q Consensus 69 ~~s~L~VeVyD~d~~~-DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sG---k~~G~L~LsV~f~p~s 138 (377)
....|++.|...+..+ ..++|+..+.=..++..+. . .......|..... -+.|.|++.+.+.|..
T Consensus 85 ~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~----~-~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 85 ISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGN----G-STSFTVELCGVGPESKVPVGILDLRLELLPNL 153 (156)
T ss_pred CCCceEEEEEEecCCCceEeeeeceehHHHHhccCC----C-ccceeEEEeccCCCCccceeEEEEEEEeecCC
Confidence 2345777777766543 4788887776666554432 1 1134556664433 4899999999998874
No 135
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=94.95 E-value=0.17 Score=44.91 Aligned_cols=90 Identities=23% Similarity=0.249 Sum_probs=60.0
Q ss_pred eEEEEEEEEeecCCC-CCCCCCeEEEEEE--CCC---CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEE
Q 035970 6 RVLEISIVSGHDLAL-VSKSMKTYSVAWV--DPE---RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYA 79 (377)
Q Consensus 6 g~LeVtVISAkdL~~-~~g~~DPYVvV~L--~p~---~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD 79 (377)
..++|+|....++.. .....+-||.+.+ +.. ....|..... ..++.|||.+.|++.-..|- -.+.|.|.||+
T Consensus 8 ~~~~i~i~~~~~~~~~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~-~~~~~Wne~l~F~i~~~~LP-~~arL~itl~~ 85 (156)
T cd08380 8 FNLRIKIHGITNINLLDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPF-STSVTWNEWLTFDILISDLP-REARLCLSIYA 85 (156)
T ss_pred CCeEEEEEeeccccccCCCceeEEEEEEEEECCEEccCceeccCCcC-CCCCcccceeEccchhhcCC-hhheEEEEEEE
Confidence 357888888888754 2345678888765 321 1234443321 36899999999986544331 25789999999
Q ss_pred cCcC---CCceeEEEEEEccc
Q 035970 80 AAWL---KDALIGSVRVLISH 97 (377)
Q Consensus 80 ~d~~---~DdlIG~a~IpLs~ 97 (377)
.... .+..||.+.++|=+
T Consensus 86 ~~~~~~~~~~~iG~~~~~lFd 106 (156)
T cd08380 86 VSEPGSKKEVPLGWVNVPLFD 106 (156)
T ss_pred EecCCCCcceEEEEEeEEeEc
Confidence 7643 35799999988765
No 136
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=94.87 E-value=0.23 Score=41.75 Aligned_cols=86 Identities=19% Similarity=0.268 Sum_probs=58.8
Q ss_pred CCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcCCCceeEEEEEEcccccCCc
Q 035970 23 KSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWLKDALIGSVRVLISHLFGTL 102 (377)
Q Consensus 23 g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~~DdlIG~a~IpLs~L~~~~ 102 (377)
|..+..|++.++......|.-.. -.+..||++|.|.++. ...|.|.||=.|+ ..+-|-..+-|.+....
T Consensus 7 ~~~eV~avLklDn~~VgqT~Wk~--~s~q~WDQ~Fti~LdR------sRELEI~VywrD~--RslCav~~lrLEd~~~~- 75 (98)
T cd08687 7 GCSEVSAVLKLDNTVVGQTQWKP--KSNQAWDQSFTLELER------SRELEIAVYWRDW--RSLCAVKFLKLEDERHE- 75 (98)
T ss_pred cccceEEEEEEcCeEEeeccccc--cccccccceeEEEeec------ccEEEEEEEEecc--hhhhhheeeEhhhhccc-
Confidence 34689999999865566675543 3578999999999986 4789999997764 34555556666663211
Q ss_pred ccCCCCCceeEEEEeeCCCCCcceEEEEEEEE
Q 035970 103 THNSSSSTRYVALQVRRPSGRPQGILNLGITL 134 (377)
Q Consensus 103 ~~~~~~~~~~v~y~Lrr~sGk~~G~L~LsV~f 134 (377)
..++ -.|+|.|...|+|
T Consensus 76 ----------~~~~-----lepqg~l~~ev~f 92 (98)
T cd08687 76 ----------VQLD-----MEPQLCLVAELTF 92 (98)
T ss_pred ----------ceec-----cccccEEEEEEEe
Confidence 1222 2467888777777
No 137
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=94.58 E-value=0.011 Score=66.22 Aligned_cols=114 Identities=13% Similarity=0.127 Sum_probs=73.8
Q ss_pred EEEEEEEeecCCC--CCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEec---cC-C-CCCCCceEEEEEEEc
Q 035970 8 LEISIVSGHDLAL--VSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVD---DR-F-LTDETSAIMIEIYAA 80 (377)
Q Consensus 8 LeVtVISAkdL~~--~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~---~~-~-L~~~~s~L~VeVyD~ 80 (377)
|++.|.+|+.|.. ..+-+|||+.+..-. +.+.|-|+. +++||+||++..|.-- .. . +...--.+.|+|||.
T Consensus 208 lR~yiyQar~L~a~dk~~~sdp~a~v~f~~-qs~~T~~v~-~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~ 285 (1105)
T KOG1326|consen 208 LRSYIYQARALGAPDKDDESDPDAAVEFCG-QSKETEVVP-GTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDL 285 (1105)
T ss_pred hHHHHHHHHhhcCCCcccCCCchhhhhccc-ccceeEeec-CcCCCCccceeeccceeecCccchhhcCCCeEEEEeehh
Confidence 4455667777743 346789999998763 566788776 5899999999998521 11 1 111224678999999
Q ss_pred CcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcceEEEEEE
Q 035970 81 AWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQGILNLGI 132 (377)
Q Consensus 81 d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~G~L~LsV 132 (377)
+.. .++|+|.......-....+ ...|+++.+. +...|.++++.
T Consensus 286 dr~g~~ef~gr~~~~p~V~~~~p--------~lkw~p~~rg-~~l~gd~l~a~ 329 (1105)
T KOG1326|consen 286 DRSGINEFKGRKKQRPYVMVQCP--------ALKWVPTMRG-AFLDGDVLIAA 329 (1105)
T ss_pred hhhchHHhhcccccceEEEecCC--------ccceEEeecc-cccccchhHHH
Confidence 864 5899998765444332222 2468877753 45566655554
No 138
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=94.29 E-value=0.49 Score=48.05 Aligned_cols=123 Identities=16% Similarity=0.197 Sum_probs=89.8
Q ss_pred EEEEEEEeecCCCCCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCC---CCCceEEEEEEEcC--c
Q 035970 8 LEISIVSGHDLALVSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLT---DETSAIMIEIYAAA--W 82 (377)
Q Consensus 8 LeVtVISAkdL~~~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~---~~~s~L~VeVyD~d--~ 82 (377)
+.|.|+.|++.... .....++.+.+++ ....|.... .+..|.||..+.+.++...|+ .++..|.+++|..+ .
T Consensus 2 ivl~i~egr~F~~~-~~~~~vv~a~~ng-~~l~TDpv~-~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQR-PRHPIVVEAKFNG-ESLETDPVP-HTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCC-CCccEEEEEEeCC-ceeeecCCC-CCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 57889999988654 2446778889985 466675443 367899999999998865543 25677999999987 3
Q ss_pred CCCceeEEEEEEcccc---cCCcccCCCCCceeEEEEeeCCCCC---cceEEEEEEEEEecC
Q 035970 83 LKDALIGSVRVLISHL---FGTLTHNSSSSTRYVALQVRRPSGR---PQGILNLGITLLDNT 138 (377)
Q Consensus 83 ~~DdlIG~a~IpLs~L---~~~~~~~~~~~~~~v~y~Lrr~sGk---~~G~L~LsV~f~p~s 138 (377)
...+.||.+.++|..+ ... +......||+|..-+.+ ..=+|.|++.+.+..
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~-----~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~ 135 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEK-----NQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDS 135 (340)
T ss_pred CcceeccEEEEEcccccccccc-----ccccCCCeeEccccccccccCCccEEEEEEEeccc
Confidence 4578999999999988 222 22346689999975332 455788888887765
No 139
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=93.76 E-value=0.37 Score=41.09 Aligned_cols=102 Identities=17% Similarity=0.044 Sum_probs=55.5
Q ss_pred EEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCC---CCCceEEEEEEEcCcCCCceeEEEEEEcccccCCccc
Q 035970 28 YSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLT---DETSAIMIEIYAAAWLKDALIGSVRVLISHLFGTLTH 104 (377)
Q Consensus 28 YVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~---~~~s~L~VeVyD~d~~~DdlIG~a~IpLs~L~~~~~~ 104 (377)
||.+.+---..+.|.|+. +.+|.+|.+-.|.|....+- .....|.||++.--...-+.||.+.|+|..++....
T Consensus 2 Fct~dFydfEtq~Tpvv~--G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~~~~- 78 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR--GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLESNG- 78 (107)
T ss_dssp EEEE-STT---EE---EE--SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH--S-
T ss_pred EEEEEeeceeeeccccee--CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhcCCC-
Confidence 455554323467899886 58999999988887653210 134678999987653345799999999999985432
Q ss_pred CCCCCceeEEEEeeCCCCCcceEEEEEEEEEe
Q 035970 105 NSSSSTRYVALQVRRPSGRPQGILNLGITLLD 136 (377)
Q Consensus 105 ~~~~~~~~v~y~Lrr~sGk~~G~L~LsV~f~p 136 (377)
........|...+|..-|.|.+.+++..
T Consensus 79 ----~~i~~~~~l~g~~~~~~g~l~y~~rl~~ 106 (107)
T PF11618_consen 79 ----ERIHGSATLVGVSGEDFGTLEYWIRLRV 106 (107)
T ss_dssp ------EEEEEEE-BSSS-TSEEEEEEEEEEE
T ss_pred ----ceEEEEEEEeccCCCeEEEEEEEEEecC
Confidence 1134566777778889999999988753
No 140
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=92.84 E-value=0.2 Score=50.43 Aligned_cols=77 Identities=19% Similarity=0.246 Sum_probs=58.7
Q ss_pred CCeEEEEEEEEeecCCCC----CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEE
Q 035970 4 PPRVLEISIVSGHDLALV----SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYA 79 (377)
Q Consensus 4 p~g~LeVtVISAkdL~~~----~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD 79 (377)
-.+.|.|.++.+++|+-. +-.-+-|+++..+...+.+|.|.. ++.-=.|.|+|...|.. ...+.+-||.
T Consensus 49 ~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs-~~~~f~w~e~F~~Dvv~------~~vl~~lvyS 121 (442)
T KOG1452|consen 49 STGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRS-SGPGFAWAEDFKHDVVN------IEVLHYLVYS 121 (442)
T ss_pred ccceEEEEEecccccccChhccCceeeeeeeeeecccCcccccccc-CCCCccchhhceeeccc------ceeeeEEEee
Confidence 357899999999999632 236789999999876777887754 35667799999998874 4688999999
Q ss_pred cCc-CCCce
Q 035970 80 AAW-LKDAL 87 (377)
Q Consensus 80 ~d~-~~Ddl 87 (377)
++. .+.++
T Consensus 122 W~pq~RHKL 130 (442)
T KOG1452|consen 122 WPPQRRHKL 130 (442)
T ss_pred cCchhhccc
Confidence 874 34443
No 141
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=92.05 E-value=0.32 Score=51.91 Aligned_cols=85 Identities=24% Similarity=0.275 Sum_probs=57.9
Q ss_pred EeecCC--CCCCCCCeEEEEEE--CCC---CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcCC-C
Q 035970 14 SGHDLA--LVSKSMKTYSVAWV--DPE---RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWLK-D 85 (377)
Q Consensus 14 SAkdL~--~~~g~~DPYVvV~L--~p~---~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~~-D 85 (377)
.|.+|. +.++++|||..++- +.. ..++|.+.++ ++||.|-+ |.+.+...--.+....+.+++||++..+ +
T Consensus 144 ~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n-~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~ 221 (529)
T KOG1327|consen 144 RAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKN-TLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGKH 221 (529)
T ss_pred eeeecCcccccccCCcceEEEEecCCCceeeccccceecc-CCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCCc
Confidence 355553 34688999998853 222 3467888765 89999987 3333322111123577889999998654 5
Q ss_pred ceeEEEEEEcccccC
Q 035970 86 ALIGSVRVLISHLFG 100 (377)
Q Consensus 86 dlIG~a~IpLs~L~~ 100 (377)
++||++..++.++..
T Consensus 222 ~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 222 DLIGKFQTTLSELQE 236 (529)
T ss_pred CceeEecccHHHhcc
Confidence 999999999998864
No 142
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=92.04 E-value=0.7 Score=41.99 Aligned_cols=91 Identities=16% Similarity=0.202 Sum_probs=58.0
Q ss_pred eEEEEEEEEeecCCCC--CCCCCeEEEEEEC-CCC----eEEeEeeC--C-CCCCCeeeeEEEEEeccCCCCCCCceEEE
Q 035970 6 RVLEISIVSGHDLALV--SKSMKTYSVAWVD-PER----KLTTRVDQ--N-GLNNPSWNEKFVFRVDDRFLTDETSAIMI 75 (377)
Q Consensus 6 g~LeVtVISAkdL~~~--~g~~DPYVvV~L~-p~~----k~rTrV~k--~-gg~NP~WNEtF~F~V~~~~L~~~~s~L~V 75 (377)
..+.|+|.+++++... ....|-||.+.|- +.. ...|+... + -...+.|||.+.|++.-..|- -.+.|.|
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LP-rearL~i 86 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLP-RESRLVL 86 (171)
T ss_pred ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCC-hhHEEEE
Confidence 4688999999998643 2357888888662 222 22343221 1 123577999999987644431 2578999
Q ss_pred EEEEcCcC----------CCceeEEEEEEccc
Q 035970 76 EIYAAAWL----------KDALIGSVRVLISH 97 (377)
Q Consensus 76 eVyD~d~~----------~DdlIG~a~IpLs~ 97 (377)
.||+.... .+..||.+.++|=+
T Consensus 87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd 118 (171)
T cd04012 87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFD 118 (171)
T ss_pred EEEEEecCCccccccccccceEEEEEeEeeEc
Confidence 99987533 24577777776654
No 143
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=91.57 E-value=0.86 Score=41.63 Aligned_cols=57 Identities=12% Similarity=0.249 Sum_probs=34.6
Q ss_pred eEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCc--CC--CceeEEEEEEccc
Q 035970 38 KLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAW--LK--DALIGSVRVLISH 97 (377)
Q Consensus 38 k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~--~~--DdlIG~a~IpLs~ 97 (377)
...|.|... +.+|.|+|+|.+.++.... ....|.|++++... .. +..+|.+.+||-+
T Consensus 60 ~~~S~v~yh-~k~P~f~deiKi~LP~~l~--~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYH-NKNPQFNDEIKIQLPPDLF--PKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT--SS-EEEEEEEEEE-CCCC--TTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEec-CCCCCccEEEEEEcCchhc--ccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 345656554 5899999999999986532 56789999998653 12 2799999999887
No 144
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=91.15 E-value=4.1 Score=37.84 Aligned_cols=125 Identities=14% Similarity=0.087 Sum_probs=66.4
Q ss_pred eEEEEEEEEeecCCC-CCCCCCeEEEEEE--CCC--CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEc
Q 035970 6 RVLEISIVSGHDLAL-VSKSMKTYSVAWV--DPE--RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAA 80 (377)
Q Consensus 6 g~LeVtVISAkdL~~-~~g~~DPYVvV~L--~p~--~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~ 80 (377)
..++|+|+.+..+.. .......||.+.| +.. ...+|....- +.++.|||-+.|++.-..|- -.+.|.|.||+.
T Consensus 10 ~~friki~~~~~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~-~~~~~WnEwL~f~I~~~dLP-~~arLc~ti~~~ 87 (178)
T cd08399 10 RKFRVKILGIDIPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPF-TEEVLWNTWLEFDIKIKDLP-KGALLNLQIYCG 87 (178)
T ss_pred CCEEEEEEeecccCcCCCCceEEEEEEEEEECCeecccceeeccCC-CCCccccccEECccccccCC-hhhEEEEEEEEE
Confidence 357888888874321 1233456777644 321 1224443332 56799999999987655441 357899999996
Q ss_pred CcCC--CceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCC-cceEEEEEEEEEecCC
Q 035970 81 AWLK--DALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGR-PQGILNLGITLLDNTM 139 (377)
Q Consensus 81 d~~~--DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk-~~G~L~LsV~f~p~s~ 139 (377)
.... ....|.. +.+... .....+..+.+.|.+.++. .+|...|.++-.+..+
T Consensus 88 ~~~~~~~~~~~~~--~~~~~~-----~~~~~l~wvn~~LFD~~~~Lr~G~~~L~~W~~~~~~ 142 (178)
T cd08399 88 KAPALSSKKSAES--PSSESK-----GKHQLLYYVNLLLIDHRFLLRTGEYVLHMWQISGKG 142 (178)
T ss_pred ecCcccccccccc--cccccc-----cccceEEEEEEEEEcCCCceecCCEEEEEecCCCcc
Confidence 3211 1111211 000000 0012234455555555442 4777888777766443
No 145
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=90.97 E-value=0.86 Score=41.28 Aligned_cols=73 Identities=16% Similarity=0.198 Sum_probs=48.7
Q ss_pred CCCCeEEEEEEC-CCCe----EEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC-CCceeEEEEEEcc
Q 035970 23 KSMKTYSVAWVD-PERK----LTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL-KDALIGSVRVLIS 96 (377)
Q Consensus 23 g~~DPYVvV~L~-p~~k----~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~-~DdlIG~a~IpLs 96 (377)
..++-||.+.|- +... ..|+... -+..+.|||-+.|+|.-..|- -.+.|.|.||+.... ....||.+.++|=
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~-f~~~~~WnEwl~fpI~i~dLP-~~a~L~iti~~~~~~~~~~~vg~~~~~lF 105 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKP-FKNRRNWNEWLTLPIKYSDLP-RNSQLAITIWDVSGTGKAVPFGGTTLSLF 105 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccC-CCCCcccceeEEcccchhcCC-hhheEEEEEEEecCCCCceEEEEEEEeeE
Confidence 357889998662 2221 2343322 246788999999987755441 257899999997643 4568998888765
Q ss_pred c
Q 035970 97 H 97 (377)
Q Consensus 97 ~ 97 (377)
+
T Consensus 106 d 106 (159)
T cd08397 106 N 106 (159)
T ss_pred C
Confidence 4
No 146
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=89.72 E-value=1.5 Score=39.85 Aligned_cols=73 Identities=21% Similarity=0.217 Sum_probs=56.0
Q ss_pred CCCeEEEEEECCCCeEEeEeeCC-CCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcCCCceeEEEEEEcccccCC
Q 035970 24 SMKTYSVAWVDPERKLTTRVDQN-GLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWLKDALIGSVRVLISHLFGT 101 (377)
Q Consensus 24 ~~DPYVvV~L~p~~k~rTrV~k~-gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~~DdlIG~a~IpLs~L~~~ 101 (377)
...-|++|.++.....+|+...- ....-.+||.|.+.|... -..|.|+||......+.+|+++.||+-.....
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~-----Pesi~l~i~E~~~~~~~~la~v~vpvP~~~~~ 109 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRW-----PESIKLEIYEKSGLSDRLLAEVFVPVPGSTVH 109 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecC-----CCEEEEEEEEccCccceEEEEEEeeCCCCccc
Confidence 45789999998766677765432 223355899999998763 37899999998888899999999998875443
No 147
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=89.18 E-value=1.1 Score=41.90 Aligned_cols=58 Identities=19% Similarity=0.196 Sum_probs=41.7
Q ss_pred CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC--C-CceeEEEEEEccc
Q 035970 37 RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL--K-DALIGSVRVLISH 97 (377)
Q Consensus 37 ~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~--~-DdlIG~a~IpLs~ 97 (377)
..++|-|... +.+|.|||++.+.|+.... ....|.|++++.-.. . ...+|.+.+||-+
T Consensus 53 se~~S~V~yH-~~~P~W~EtiKi~lP~~~~--~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~ 113 (189)
T cd08695 53 SEYRSFVLYH-NNSPRWNETIKLPIPIDKF--RGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR 113 (189)
T ss_pred ceEEEEEEEc-CCCCCCceeEEEecChhhC--CCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence 3567777665 5799999999999987543 567899988875421 2 2578877777743
No 148
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=88.07 E-value=1.6 Score=41.21 Aligned_cols=57 Identities=12% Similarity=0.176 Sum_probs=41.6
Q ss_pred CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCc--CC---CceeEEEEEEcc
Q 035970 37 RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAW--LK---DALIGSVRVLIS 96 (377)
Q Consensus 37 ~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~--~~---DdlIG~a~IpLs 96 (377)
...+|-|... +.+|.|||++.+.|+.... ....|.|++++.-. .. ...+|.+.+||-
T Consensus 53 se~~S~V~Yh-~~~P~W~EtIKl~lP~~~~--~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQ-VDKPKWFETFKVAIPIEDF--KSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEee-cCCCCCceeEEEecChhhC--CCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 4567777554 5799999999999986543 56889999987542 12 357888888875
No 149
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=87.20 E-value=1.9 Score=37.75 Aligned_cols=58 Identities=17% Similarity=0.293 Sum_probs=38.6
Q ss_pred EeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcCC-C----ceeEEEEEEcccc
Q 035970 40 TTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWLK-D----ALIGSVRVLISHL 98 (377)
Q Consensus 40 rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~~-D----dlIG~a~IpLs~L 98 (377)
.|+...-...++.|||.+.|++.-..|- ..+.|.|.||...... + ..||.+.++|=+.
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LP-r~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLP-REARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS--TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCC-hhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 4554432126899999999987654442 3578999999977543 3 6999999987653
No 150
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=84.78 E-value=3.5 Score=37.56 Aligned_cols=47 Identities=11% Similarity=0.297 Sum_probs=35.5
Q ss_pred CCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCc------CCCceeEEEEEEccc
Q 035970 49 NNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAW------LKDALIGSVRVLISH 97 (377)
Q Consensus 49 ~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~------~~DdlIG~a~IpLs~ 97 (377)
.+|.|+|+|.+.++... .....|.|++|+-.. .....+|.+.+||-+
T Consensus 63 k~p~f~deiKi~LP~~l--~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 63 KNPVFNDEIKIQLPADL--TPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred CCCCCceeEEEecCCcc--CCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 79999999999996432 146789999998652 225688888888765
No 151
>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]
Probab=80.48 E-value=0.29 Score=52.13 Aligned_cols=58 Identities=17% Similarity=0.168 Sum_probs=52.4
Q ss_pred ccccCCcchhhhhhhccccCCcchhhhhhccccccccccccc--------cccCCCcccccccCCcc
Q 035970 174 QNSKQSKDDQELERVLKPKDNSLSKAKLRRSQSDKTDLTSED--------YSKNSSHQAQQPTGTGS 232 (377)
Q Consensus 174 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~s~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 232 (377)
=.+|.+|.+.++|++|+ |...+.+.++.|.++|+..|+..| |+||.+.-.|.|--|.+
T Consensus 159 LarKk~Tg~iyAmK~Lk-KS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD~~~LYLiMEylP 224 (550)
T KOG0605|consen 159 LARKKDTGEIYAMKILK-KSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYSFQDKEYLYLIMEYLP 224 (550)
T ss_pred EEEEccCCcEEeeeccc-HHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEecCCCeeEEEEEecC
Confidence 34667889999999999 788899999999999999999988 89999999999999975
No 152
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=77.05 E-value=9.1 Score=35.59 Aligned_cols=57 Identities=11% Similarity=0.253 Sum_probs=39.5
Q ss_pred eEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC-------CCceeEEEEEEccc
Q 035970 38 KLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL-------KDALIGSVRVLISH 97 (377)
Q Consensus 38 k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~-------~DdlIG~a~IpLs~ 97 (377)
...|.|... +.+|.|+|+|.+.++... .....|.|++|+-..- ....+|-+.+||-.
T Consensus 55 ~~~S~V~yH-nk~P~f~DEiKi~LP~~l--~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 55 EAYTAVTYH-NKSPDFYDEIKIKLPADL--TDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eEEEEEEEe-CCCCcccceEEEEcCCCC--CCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 456666655 589999999999988643 2457899999985421 13567777777653
No 153
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=76.97 E-value=14 Score=30.62 Aligned_cols=72 Identities=22% Similarity=0.306 Sum_probs=44.0
Q ss_pred EEEEEEEeecCCCC-CCC-CCeEEEEEE-CCCC----eEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEc
Q 035970 8 LEISIVSGHDLALV-SKS-MKTYSVAWV-DPER----KLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAA 80 (377)
Q Consensus 8 LeVtVISAkdL~~~-~g~-~DPYVvV~L-~p~~----k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~ 80 (377)
+.+.+..++++.-. ... .+-||.+.+ ++.. ...|+.. .....+.|||-+.|++.-..|. -.+.|.|.||+.
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~-~~~~~~~Wnewl~f~i~i~~LP-r~a~L~~~i~~~ 90 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYK-PFFPSVKWNEWLTFPIQISDLP-REARLCITIYEV 90 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEeccc-CCCCCcccceeEEccCchhcCC-hhhEEEEEEEEe
Confidence 55667777766432 122 388888866 2221 2234332 2345689999999987654431 257899999985
Q ss_pred C
Q 035970 81 A 81 (377)
Q Consensus 81 d 81 (377)
.
T Consensus 91 ~ 91 (100)
T smart00142 91 K 91 (100)
T ss_pred e
Confidence 3
No 154
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=75.47 E-value=14 Score=33.49 Aligned_cols=95 Identities=17% Similarity=0.033 Sum_probs=54.3
Q ss_pred CeEEEEEEEEeecCCCCCCCCCeEEEEEE-CCC-----CeEEeEeeCC-CCCCCeeeeEEEEEeccCCCCCCCceEEEEE
Q 035970 5 PRVLEISIVSGHDLALVSKSMKTYSVAWV-DPE-----RKLTTRVDQN-GLNNPSWNEKFVFRVDDRFLTDETSAIMIEI 77 (377)
Q Consensus 5 ~g~LeVtVISAkdL~~~~g~~DPYVvV~L-~p~-----~k~rTrV~k~-gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeV 77 (377)
...|.|.|-+.. |++...-.|||+.|++ |.+ ..+.|.+... .+..=.||.+..++.+-..| ..+..|.||+
T Consensus 12 ~t~l~v~Iekig-lkda~~~~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~l-p~Gaai~fE~ 89 (147)
T PF14186_consen 12 MTYLSVFIEKIG-LKDASQYIDPYFTVSVKDGNGKDVEPPQDTPVGSRREDNYVHFNNTVHLQTPLEKL-PKGAAIFFEF 89 (147)
T ss_dssp --EEEEEEEEEE--TTGGG-EEEEEEEEEE-TTS-BSS--EE--S-SEEETTEEEEEEEEE-SS-GGGS--TT-EEEEEE
T ss_pred CceEEEEEEEEE-ECChHHccCCeEEEEEECCCCCCccccccCCCcccccCCEEEEcccEEEcCCHHHC-CCceEEEEEE
Confidence 456777777765 8877667899999998 322 3456766421 13345577776665544334 2467899999
Q ss_pred EEcCcCC--CceeEEEEEEcccccCC
Q 035970 78 YAAAWLK--DALIGSVRVLISHLFGT 101 (377)
Q Consensus 78 yD~d~~~--DdlIG~a~IpLs~L~~~ 101 (377)
.++..-. -...+.+.++++++.++
T Consensus 90 kH~K~kk~k~S~kcw~fme~dei~~g 115 (147)
T PF14186_consen 90 KHYKPKKKKTSTKCWAFMELDEIKPG 115 (147)
T ss_dssp EEEETTTTCEEEEEEEEEEGGG--SE
T ss_pred EeeeccceeeeeeEEEEEEhhhccCC
Confidence 9976443 34578889999887665
No 155
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=70.81 E-value=18 Score=33.91 Aligned_cols=57 Identities=11% Similarity=0.234 Sum_probs=39.6
Q ss_pred eEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC----------CCceeEEEEEEccc
Q 035970 38 KLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL----------KDALIGSVRVLISH 97 (377)
Q Consensus 38 k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~----------~DdlIG~a~IpLs~ 97 (377)
...|.|... +.+|.|+|++.+.++... .....|.|++|+-... ....+|-+.+||-.
T Consensus 57 ~~~s~V~yh-~k~P~f~dEiKI~LP~~l--~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 57 SAYAAVLHH-NQNPEFYDEIKIELPTQL--HEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred EEEEEEEEc-CCCCccceeEEEecCCcC--CCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 456667665 589999999999987642 2456799999986411 13467777777654
No 156
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=61.06 E-value=11 Score=42.92 Aligned_cols=87 Identities=14% Similarity=0.152 Sum_probs=63.6
Q ss_pred CCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcCC-CceeEEEEEEcccccCCcc
Q 035970 25 MKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWLK-DALIGSVRVLISHLFGTLT 103 (377)
Q Consensus 25 ~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~~-DdlIG~a~IpLs~L~~~~~ 103 (377)
+++|+.+.+....-.+|.+..+-=.+|.|.+.|...+.. ....+.+.|-+.+..+ ..++|.+.+++..+..+..
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h-----~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~ 212 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAH-----KAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHR 212 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhccccccc-----cccEEEEeecCCccccceeEEEEeccchhhhhcccc
Confidence 489999999855555666555433789999999877664 3578899998888777 8999999999988877532
Q ss_pred cCCCCCceeEEEEeeCCCCC
Q 035970 104 HNSSSSTRYVALQVRRPSGR 123 (377)
Q Consensus 104 ~~~~~~~~~v~y~Lrr~sGk 123 (377)
...++.+..-+++
T Consensus 213 -------~~~~~~Il~~d~~ 225 (887)
T KOG1329|consen 213 -------IGGWFPILDNDGK 225 (887)
T ss_pred -------ccceeeeeccCCc
Confidence 1246666654443
No 157
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=50.86 E-value=56 Score=27.61 Aligned_cols=82 Identities=21% Similarity=0.235 Sum_probs=50.8
Q ss_pred EEEEEeccCCCCC--CCceEEEEEEEcCc----CCCceeEEEEEEcccccCCcccC-------CCCCceeEEEEeeCCCC
Q 035970 56 KFVFRVDDRFLTD--ETSAIMIEIYAAAW----LKDALIGSVRVLISHLFGTLTHN-------SSSSTRYVALQVRRPSG 122 (377)
Q Consensus 56 tF~F~V~~~~L~~--~~s~L~VeVyD~d~----~~DdlIG~a~IpLs~L~~~~~~~-------~~~~~~~v~y~Lrr~sG 122 (377)
...|.+++..|.. ....|.+.++.-.. -...+||.+.|++.+++..-... +......-.|+|+++.+
T Consensus 12 ScLF~~~~~~L~~~l~~~pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~~ 91 (112)
T PF14924_consen 12 SCLFALTPEDLQQSLSSFPLYIVVKKVPPGFPTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDENG 91 (112)
T ss_pred EEEEEcCHHHHHHHhhCCceEEEEEecCCCCCCCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCCC
Confidence 4556666544321 13456666665321 34679999999998875221100 01112335789999999
Q ss_pred CcceEEEEEEEEEec
Q 035970 123 RPQGILNLGITLLDN 137 (377)
Q Consensus 123 k~~G~L~LsV~f~p~ 137 (377)
...|+|.|.+++..-
T Consensus 92 ~~~G~I~l~iRLscl 106 (112)
T PF14924_consen 92 NPVGEISLYIRLSCL 106 (112)
T ss_pred ceeeeEEEEEEEecC
Confidence 999999999988643
No 158
>PF06547 DUF1117: Protein of unknown function (DUF1117); InterPro: IPR010543 This entry represents the C terminus of a number of hypothetical plant proteins.
Probab=45.06 E-value=6.9 Score=33.86 Aligned_cols=9 Identities=67% Similarity=1.412 Sum_probs=7.5
Q ss_pred Ceeeeeccc
Q 035970 346 GLFSCFGNA 354 (377)
Q Consensus 346 ~~~~cf~~~ 354 (377)
+||+||+.+
T Consensus 74 n~fs~f~~~ 82 (117)
T PF06547_consen 74 NLFSCFGRI 82 (117)
T ss_pred HHHHHhcCC
Confidence 599999864
No 159
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=43.29 E-value=2.6e+02 Score=29.24 Aligned_cols=99 Identities=11% Similarity=0.178 Sum_probs=64.4
Q ss_pred CCCeEEEEEECCCCeEEeEeeCCCCCCC-eeeeEEEEEeccCCCCCCCceEEEEEEEcCcCCCceeEEEEEEccc-ccCC
Q 035970 24 SMKTYSVAWVDPERKLTTRVDQNGLNNP-SWNEKFVFRVDDRFLTDETSAIMIEIYAAAWLKDALIGSVRVLISH-LFGT 101 (377)
Q Consensus 24 ~~DPYVvV~L~p~~k~rTrV~k~gg~NP-~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~~DdlIG~a~IpLs~-L~~~ 101 (377)
.-.-|+.+..+. ...+|..+..+-.+- .-.+.....+... ...|.|.||-....+...||.+.|.+.. +...
T Consensus 73 ~khiyIef~~Gr-~d~TT~~IpTsKK~RI~IqqRV~IkIRQc-----DnTLkI~lfKKkLvkk~hIgdI~InIn~dIIdk 146 (508)
T PTZ00447 73 YKHIYIIFSTDK-YDFTTDEIPTNKKNRIHIDQRVDIKIRQC-----DETLRVDLFTTKLTKKVHIGQIKIDINASVISK 146 (508)
T ss_pred ceeEEEEEEcCc-eEEEccccccCcCceEEEeeeeeeeeeec-----CceEEEEEEeccccceeEEEEEEecccHHHHhc
Confidence 446788888873 455564333222222 2334444445432 4689999999888889999999998875 2222
Q ss_pred cccCCCCCceeEEEEeeCCCCCcceEEEEEEEEE
Q 035970 102 LTHNSSSSTRYVALQVRRPSGRPQGILNLGITLL 135 (377)
Q Consensus 102 ~~~~~~~~~~~v~y~Lrr~sGk~~G~L~LsV~f~ 135 (377)
..+...||.+ ..+|+..+.|.|++.=+
T Consensus 147 ------~FPKnkWy~c-~kDGq~~cRIqLSFhKL 173 (508)
T PTZ00447 147 ------SFPKNEWFVC-FKDGQEICKVQMSFYKI 173 (508)
T ss_pred ------cCCccceEEE-ecCCceeeeEEEEehhh
Confidence 1224579988 57889999999887533
No 160
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=35.83 E-value=1.9e+02 Score=32.42 Aligned_cols=80 Identities=19% Similarity=0.338 Sum_probs=57.7
Q ss_pred EEEEEEEEeecCCCCCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCc----
Q 035970 7 VLEISIVSGHDLALVSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAW---- 82 (377)
Q Consensus 7 ~LeVtVISAkdL~~~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~---- 82 (377)
.++|.|...++|+.....-=.||...+++ .+..|.-.. ..-|.|...=-|.-..+ --.+.|.+|.+..
T Consensus 342 smevvvmevqglksvapnrivyctmeveg-eklqtdqae--askp~wgtqgdfstthp-----lpvvkvklftestgvla 413 (1218)
T KOG3543|consen 342 SMEVVVMEVQGLKSVAPNRIVYCTMEVEG-EKLQTDQAE--ASKPKWGTQGDFSTTHP-----LPVVKVKLFTESTGVLA 413 (1218)
T ss_pred eeeEEEeeeccccccCCCeeEEEEEEecc-cccccchhh--hcCCCCCcCCCcccCCC-----CceeEEEEEeecceeEE
Confidence 47889999999986543335899999986 577775433 46899998777765432 3567888887652
Q ss_pred CCCceeEEEEEE
Q 035970 83 LKDALIGSVRVL 94 (377)
Q Consensus 83 ~~DdlIG~a~Ip 94 (377)
+.|+-+|.+.+.
T Consensus 414 ledkelgrvil~ 425 (1218)
T KOG3543|consen 414 LEDKELGRVILQ 425 (1218)
T ss_pred eechhhCeEEEe
Confidence 478999987764
No 161
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=34.31 E-value=47 Score=35.91 Aligned_cols=57 Identities=19% Similarity=0.369 Sum_probs=42.9
Q ss_pred EeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCc-----CCCceeEEEEEEcccccCC
Q 035970 40 TTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAW-----LKDALIGSVRVLISHLFGT 101 (377)
Q Consensus 40 rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~-----~~DdlIG~a~IpLs~L~~~ 101 (377)
+|.++.+ ..||.|-++|.+.-.-. ....|.|+++|-+. ...+|+|++..-++.+...
T Consensus 44 rte~i~~-~~~p~f~~~~~l~y~fE----~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~ 105 (529)
T KOG1327|consen 44 RTEVIRN-VLNPFFTKKFLLQYRFE----KVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSS 105 (529)
T ss_pred ceeeeec-cCCccceeeechhheee----eeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhh
Confidence 6777764 68999999887654321 34789999999763 2578999999988887654
No 162
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=31.04 E-value=7.3 Score=42.94 Aligned_cols=51 Identities=14% Similarity=0.190 Sum_probs=36.1
Q ss_pred EEEEEeecCCCC------CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEecc
Q 035970 10 ISIVSGHDLALV------SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDD 63 (377)
Q Consensus 10 VtVISAkdL~~~------~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~ 63 (377)
+++|.|.++.+. .-.++++++..++ ++..+|+.... +.+|+|||. .|.+.+
T Consensus 284 l~lI~a~~~~~i~~~~~~~f~~~~~~itsf~-~~~frt~~~~~-~e~piyNe~-~~E~~~ 340 (975)
T KOG2419|consen 284 LTLIGAEMKYDIVEDVAKLFKDKWLAITSFG-EQTFRTEISDD-TEKPIYNED-EREDSD 340 (975)
T ss_pred HHHhhhhcccchhhhhhhccCCCchheeecc-hhhhhhhhhcc-ccccccccc-cccccc
Confidence 356677776442 1367999999997 46778887654 789999997 555543
No 163
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=28.97 E-value=27 Score=39.94 Aligned_cols=82 Identities=21% Similarity=0.192 Sum_probs=57.1
Q ss_pred CeEEEEEEEEeecCCCCCCCCCeEEEEEECC----CCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEc
Q 035970 5 PRVLEISIVSGHDLALVSKSMKTYSVAWVDP----ERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAA 80 (377)
Q Consensus 5 ~g~LeVtVISAkdL~~~~g~~DPYVvV~L~p----~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~ 80 (377)
++.|++.+++|..|+. ..+-||...++. ..+.+|+++.+ +..|-||+.|++++-. ...+.++.+++
T Consensus 758 ygflh~~vhsat~lkq---s~~lY~Td~v~e~~~~~s~~st~~iad-T~~~~~npe~hv~~~~------sqS~r~~~~ek 827 (1112)
T KOG4269|consen 758 YGFLHVIVHSATGLKQ---SRNLYCTDEVDEFGYFVSKASTRVIAD-TAEPQWNPEKHVPVIE------SQSSRLEKTEK 827 (1112)
T ss_pred ccceeeeecccccccc---ccceeeehhhhhhccccccccceeeec-ccCCCCChhcccchhh------ccccchhhhcc
Confidence 5788999999988864 346788876641 24678898876 7899999999998864 34556666665
Q ss_pred Cc-----------CCCceeEEEEEEcc
Q 035970 81 AW-----------LKDALIGSVRVLIS 96 (377)
Q Consensus 81 d~-----------~~DdlIG~a~IpLs 96 (377)
.. ..+...|.+.+.|.
T Consensus 828 ~~~~~k~~~~~~~~~~~~~~~~~~~l~ 854 (1112)
T KOG4269|consen 828 STPVEKLIDSHSQNSQNEEKRSRMKLD 854 (1112)
T ss_pred cchHHHhhhccchhhcccccccccccC
Confidence 42 13555666555544
No 164
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=27.54 E-value=38 Score=37.61 Aligned_cols=51 Identities=16% Similarity=0.164 Sum_probs=35.6
Q ss_pred CCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcC
Q 035970 24 SMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAA 81 (377)
Q Consensus 24 ~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d 81 (377)
..+||+-|.+.-.+...+.+ +..+.+|.||++|.+.|.. ...+.|.||...
T Consensus 27 al~~y~~v~vk~~~~~~~~~-~~~~~~~~~~~~F~~~v~~------~~~~~i~v~~~~ 77 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMT-KVELRIPELRETFHVEVVA------GGAKNIIVLLKS 77 (694)
T ss_pred hhhhhheeccceeecccccC-CCCCCCchhhhheeeeeec------CCceEEEEEecC
Confidence 46899998886322222222 2337899999999999875 467888888865
No 165
>PF06449 DUF1082: Mitochondrial domain of unknown function (DUF1082); InterPro: IPR009455 The domain is found exclusively in plant mitochonchria and is a putative homing endonuclease, though such a function remains to be demonstrated. The domain is found C-terminal to the plant mitochondrial ATPase subunit 8 domain IPR003319 from INTERPRO.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0005739 mitochondrion, 0016021 integral to membrane
Probab=21.74 E-value=44 Score=24.88 Aligned_cols=11 Identities=55% Similarity=1.062 Sum_probs=8.5
Q ss_pred Ceeeeecccee
Q 035970 346 GLFSCFGNAFG 356 (377)
Q Consensus 346 ~~~~cf~~~~g 356 (377)
-|.||||-|-|
T Consensus 10 t~iscFGEIsg 20 (51)
T PF06449_consen 10 TLISCFGEISG 20 (51)
T ss_pred EEEEEeceeec
Confidence 38899997754
Done!