BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035971
(614 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 101/310 (32%), Positives = 169/310 (54%), Gaps = 17/310 (5%)
Query: 15 KARVIAKIRGFADLEAESANWVCIQKPNGEDSDSVTVS-FGEQPSSRKECYKLDYCYEQN 73
+ RV ++R F D A +++ C++ G DS S+ ++ + + K Y+ D Y +
Sbjct: 22 RVRVAVRLRPFVDGTAGASDPPCVR---GMDSCSLEIANWRNHQETLK--YQFDAFYGER 76
Query: 74 EGNGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQGSYEEPGLAALAVDEILSI 133
I+A V+P++ + G NA+++A G G+GKT + GS E+PG+ A+ ++L +
Sbjct: 77 STQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQL 136
Query: 134 SEKMGK-------SITISFYEIFQDHVYDLLDPKQQEVQILENGQGKIQLKGLSQVPVKS 186
+ + G S+T+S+ EI+Q+ V DLLDP ++ I E+ +G I + GLSQ P+ S
Sbjct: 137 TREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLVIREDCRGNILIPGLSQKPISS 196
Query: 187 ISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVSPVSNFLP----TGKMNFVDLAG 242
++F++ ++ +R RSH L+V V P GK+ +DLAG
Sbjct: 197 FADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQREGKLYLIDLAG 256
Query: 243 YQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANESHVPYRESKLTRMLQESLGCKS 302
+D RR +G E+ +N S++ L VV ALN VPYR+SKLTR+LQ+SLG +
Sbjct: 257 SEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQDSLGGSA 316
Query: 303 KILMLTCLLP 312
+++ + P
Sbjct: 317 HSILIANIAP 326
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 145 bits (366), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 105/349 (30%), Positives = 177/349 (50%), Gaps = 37/349 (10%)
Query: 17 RVIAKIRGFADLEAESANWVCIQKPNGEDSDSVTVSFGEQPSSRKECYKLDYCYEQNEGN 76
RVIA++R + E + +D + + +P S ++LD +
Sbjct: 7 RVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKPVS----FELDKVFSPQASQ 62
Query: 77 GIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQGSYEEPGLAALAVDEILS-ISE 135
+F +EV+ L++ +G N I A G G+GKT ++G+ E PG+ A+ + S + E
Sbjct: 63 QDVF-QEVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQE 121
Query: 136 KMGK---SITISFYEIFQDHVYDLL--DPKQQ-EVQILENGQGKIQLKGLSQVPVKSISE 189
K +IT+S EI+ + + DLL +P+++ E+++ +G G++ + GL++ V+S+ +
Sbjct: 122 KASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDGSGQLYVPGLTEFQVQSVDD 181
Query: 190 FQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVSPV---SNFLPTGKMNFVDLAGYQDI 246
K++ H +R + RSH LIV V V + TGK+N VDLAG + +
Sbjct: 182 INKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAGSERV 241
Query: 247 RRKSTEGSIFVENTKVNKSIYTLFNVVYALNANESHVPYRESKLTRMLQESLGCKSKILM 306
+ EGS E +NKS+ L +V+ AL + + HVP+R SKLT +LQ+SL SK LM
Sbjct: 242 GKSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLM 301
Query: 307 LTCLLPRSVSTTKTQTGSQMHSSTKKATGVASVVKGRYSLKFSVQVRKL 355
+ + P +T++T YSLKF+ +VR +
Sbjct: 302 VVQVSPVEKNTSET----------------------LYSLKFAERVRSV 328
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 128 bits (322), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 87/335 (25%), Positives = 162/335 (48%), Gaps = 21/335 (6%)
Query: 17 RVIAKIRGFADLEAESANWVCIQKPNGEDSDSVTVSFGEQPSSRKECYKLDYCYEQNEGN 76
+V+ + R D E ++ + ++ PN + + ++++ + Y D ++ N
Sbjct: 14 KVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIA--------GKVYLFDKVFKPNASQ 65
Query: 77 GIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQGSYEE-------PGLAALAVDE 129
++ K ++++V G N TI A G SGKT ++G + P + +
Sbjct: 66 EKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNH 125
Query: 130 ILSISEKMGKSITISFYEIFQDHVYDLLDPKQQEVQILENGQGKIQLKGLSQVPVKSISE 189
I ++ + I +S+YEI+ D + DLLD + + + E+ +KG ++ V S +
Sbjct: 126 IYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHEDKNRVPYVKGATERFVSSPED 185
Query: 190 FQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVSPVSNFLP----TGKMNFVDLAGYQD 245
++ ++R + RSH ++NV N +GK+ VDLAG +
Sbjct: 186 VFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQ-ENLENQKKLSGKLYLVDLAGSEK 244
Query: 246 IRRKSTEGSIFVENTKVNKSIYTLFNVVYAL-NANESHVPYRESKLTRMLQESLGCKSKI 304
+ + EG++ E +NKS+ L NV+ AL + N++H+PYR+SKLTR+LQESLG ++
Sbjct: 245 VSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNART 304
Query: 305 LMLTCLLPRSVSTTKTQTGSQMHSSTKKATGVASV 339
++ C P S + ++T++ K V V
Sbjct: 305 TIVICCSPASFNESETKSTLDFGRRAKTVKNVVCV 339
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 125 bits (315), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 143/276 (51%), Gaps = 16/276 (5%)
Query: 62 ECYKLDYCYEQNEGNGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQGSYEEP- 120
+ + D Y+ N ++ +PL+ V G N TI A G G+GKT ++G +P
Sbjct: 68 KTFTFDAVYDWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPE 127
Query: 121 --GLAALAVDEI---LSISEKMGKSITISFYEIFQDHVYDLLDPKQ-QEVQILENGQGKI 174
G+ + D I +S S+ + S+ EI+Q+ + DLL Q + +++ E +
Sbjct: 128 KRGVIPNSFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQTKRLELKERPDTGV 187
Query: 175 QLKGLSQVPVKSISEFQKLYISMHNSRKPVQKITMD-LPRRSHKGLIVNV--SPVS---- 227
+K LS KS+ E + + +++ N + V M+ RSH ++ + S V
Sbjct: 188 YVKDLSSFVTKSVKEIEHV-MNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGE 246
Query: 228 NFLPTGKMNFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYAL-NANESHVPYR 286
N + GK+N VDLAG + + +G E TK+N S+ L NV+ AL + +H+PYR
Sbjct: 247 NHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYR 306
Query: 287 ESKLTRMLQESLGCKSKILMLTCLLPRSVSTTKTQT 322
+SKLTR+LQ+SLG +K +M+ + P S + +T T
Sbjct: 307 DSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLT 342
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 125 bits (314), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 92/318 (28%), Positives = 156/318 (49%), Gaps = 23/318 (7%)
Query: 17 RVIAKIRGFADLEAESANW--VCIQKPNGEDSDSVTVSFGEQPSSRKECYKLDYCYEQNE 74
+V+A+ R +E ES V Q P D+ TV E S + D ++ +
Sbjct: 9 KVVARFRPQNRVEIESGGQPIVTFQGP-----DTCTVDSKEAQGS----FTFDRVFDMSC 59
Query: 75 GNGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQG-SYEEP---GLAALAVDEI 130
IF +KP + ++ NG N T+ A G G+GK+ + G S ++P G+ V++I
Sbjct: 60 KQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQI 119
Query: 131 ----LSISEKMGKSITISFYEIFQDHVYDLLDPKQQEVQILENGQGKIQLKGLSQVPVKS 186
LS + + ++ +S+ EI+ + + DLL P+ + + E + +KGL ++ V S
Sbjct: 120 FTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRGVYVKGLLEIYVSS 179
Query: 187 ISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVSPV---SNFLPTGKMNFVDLAGY 243
+ E ++ N+R RSH ++ ++ + +G++ VDLAG
Sbjct: 180 VQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLVDLAGS 239
Query: 244 QDIRRKSTEGSIFVENTKVNKSIYTLFNVVYAL-NANESHVPYRESKLTRMLQESLGCKS 302
+ + + G E K+NKS+ L V+ AL + SHVPYR+SKLTR+LQESLG S
Sbjct: 240 EKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNS 299
Query: 303 KILMLTCLLPRSVSTTKT 320
+ ++ P S + +T
Sbjct: 300 RTTLIINCSPSSYNDAET 317
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 125 bits (314), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 88/268 (32%), Positives = 128/268 (47%), Gaps = 10/268 (3%)
Query: 64 YKLDYCYEQNEGNGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQGSYEEPGLA 123
+ D Y+Q N IF KPLI V G N+TI A G G+GKT + G+ EEPG
Sbjct: 58 FTFDAVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAI 117
Query: 124 ALAV----DEILSISEKMGKSITISFYEIFQDHVYDLLDPKQQEVQILENGQGKIQLKGL 179
+ D I S S + S+ E++ + + DL+ ++ + E+ I + GL
Sbjct: 118 PNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIK-NNTKLPLKEDKTRGIYVDGL 176
Query: 180 SQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNV--SPV---SNFLPTGK 234
S V + +E L +R D RSH +V + S V + GK
Sbjct: 177 SMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVIRVGK 236
Query: 235 MNFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANESHVPYRESKLTRML 294
+N VDLAG + + G VE K+N S+ L V+ L +H+PYR+SKLTR+L
Sbjct: 237 LNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKLTRLL 296
Query: 295 QESLGCKSKILMLTCLLPRSVSTTKTQT 322
Q+SLG SK LM + P S + +T +
Sbjct: 297 QDSLGGNSKTLMCANISPASTNYDETMS 324
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/286 (30%), Positives = 143/286 (50%), Gaps = 21/286 (7%)
Query: 67 DYCYEQNEGNGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQGSYEEPGLAALA 126
D ++ N +F + K L+ +G N I A G GSGKT I G+ PGL A
Sbjct: 52 DRVFDGNATQDDVF-EDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRA 110
Query: 127 VDEILSI----SEKMGKSITISFYEIFQDHVYDLLDPKQQE---VQILENGQGKIQLKGL 179
+ E+ I S K S+ E++QD + DLL PKQ + + I ++ +G + ++ +
Sbjct: 111 MSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSVENV 170
Query: 180 SQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVSPVSNFLPT-----GK 234
+ V + + E + + R + + RSH LIV+V S L T GK
Sbjct: 171 TVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSH--LIVSVIIESTNLQTQAIARGK 228
Query: 235 MNFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANESHVPYRESKLTRML 294
++FVDLAG + +++ + G+ E +NKS+ L +V+ AL++ H+PYR KLT ++
Sbjct: 229 LSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLM 288
Query: 295 QESLGCKSKILMLTCLLPRSVSTTKTQTGSQMHSSTKKATGVASVV 340
+SLG +K LM + P + +T H+S A+ V S+V
Sbjct: 289 SDSLGGNAKTLMFVNISPAESNLDET------HNSLTYASRVRSIV 328
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 89/299 (29%), Positives = 145/299 (48%), Gaps = 40/299 (13%)
Query: 57 PSSRKECYKLDYCYEQNEGNGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQGS 116
P + + D Y+ + ++ V+PLI V G N T+ A G G+GKT +QG+
Sbjct: 63 PGELPKTFTFDAVYDASSKQADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQGT 122
Query: 117 YEEPGLAALAVDEILSISEKMGKS------ITISFYEIFQDHVYDLLDPKQ-QEVQILEN 169
+ EP L + + I + +S + S+ EI+Q+ + DLL + + +++ EN
Sbjct: 123 WVEPELRGVIPNAFEHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKEPGKRLELKEN 182
Query: 170 GQGKIQLKGLSQVPVKSISEFQKLYISMHNSRKPVQKITM-DLPRRSHKGLIVNV----- 223
+ + +K LS K++ E + + +++ N + V M ++ RSH I+ V
Sbjct: 183 PETGVYIKDLSSFVTKNVKEIEHV-MNLGNQTRAVGSTHMNEVSSRSHAIFIITVECSER 241
Query: 224 -SPVSNFLPTGKMNFVDLAG--YQDIRRKSTEGSIFV----------------------E 258
S + + GK+N VDLAG Q+ +T G E
Sbjct: 242 GSDGQDHIRVGKLNLVDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAGGERPKE 301
Query: 259 NTKVNKSIYTLFNVVYALNANES-HVPYRESKLTRMLQESLGCKSKILMLTCLLPRSVS 316
+K+N S+ L NV+ AL N S H+PYR+SKLTR+LQ+SLG +K +M+ L P S S
Sbjct: 302 ASKINLSLSALGNVIAALAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHS 360
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/317 (28%), Positives = 153/317 (48%), Gaps = 23/317 (7%)
Query: 17 RVIAKIRGFADLEAESANWVCIQKPNGEDSDSVTVSFGEQPSSRKECYKLDYCYEQNEGN 76
+V+ + R + E + I K GED TV +P Y D ++ +
Sbjct: 10 KVMCRFRPLNESEVNRGDKY-IAKFQGED----TVVIASKP------YAFDRVFQSSTSQ 58
Query: 77 GIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQGSYEEP---GLAALAVDEIL-- 131
++ K ++ +V G N TI A G SGKT ++G +P G+ V +I
Sbjct: 59 EQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNY 118
Query: 132 --SISEKMGKSITISFYEIFQDHVYDLLDPKQQEVQILENGQGKIQLKGLSQVPVKSISE 189
S+ E + I +S++EI+ D + DLLD + + + E+ +KG ++ V S E
Sbjct: 119 IYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDE 178
Query: 190 FQKLYISMHNSRKPVQKITMD-LPRRSHKGLIVNVSPVSNFLP---TGKMNFVDLAGYQD 245
I S + V M+ RSH ++NV + +GK+ VDLAG +
Sbjct: 179 VMDT-IDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEK 237
Query: 246 IRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANESHVPYRESKLTRMLQESLGCKSKIL 305
+ + EG++ E +NKS+ L NV+ AL ++VPYR+SK+TR+LQ+SLG +
Sbjct: 238 VSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTT 297
Query: 306 MLTCLLPRSVSTTKTQT 322
++ C P S + ++T++
Sbjct: 298 IVICCSPSSYNESETKS 314
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 91/317 (28%), Positives = 153/317 (48%), Gaps = 23/317 (7%)
Query: 17 RVIAKIRGFADLEAESANWVCIQKPNGEDSDSVTVSFGEQPSSRKECYKLDYCYEQNEGN 76
+V+ + R + E + I K GED TV +P Y D ++ +
Sbjct: 10 KVMCRFRPLNESEVNRGDKY-IAKFQGED----TVVIASKP------YAFDRVFQSSTSQ 58
Query: 77 GIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQGSYEEP---GLAALAVDEIL-- 131
++ K ++ +V G N TI A G SGKT ++G +P G+ V +I
Sbjct: 59 EQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNY 118
Query: 132 --SISEKMGKSITISFYEIFQDHVYDLLDPKQQEVQILENGQGKIQLKGLSQVPVKSISE 189
S+ E + I +S++EI+ D + DLLD + + + E+ +KG ++ V S E
Sbjct: 119 IYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDE 178
Query: 190 FQKLYISMHNSRKPVQKITMD-LPRRSHKGLIVNVSPVSNFLP---TGKMNFVDLAGYQD 245
I S + V M+ RSH ++NV + +GK+ VDLAG +
Sbjct: 179 VMDT-IDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEK 237
Query: 246 IRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANESHVPYRESKLTRMLQESLGCKSKIL 305
+ + EG++ E +NKS+ L NV+ AL ++VPYR+SK+TR+LQ+SLG +
Sbjct: 238 VSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTT 297
Query: 306 MLTCLLPRSVSTTKTQT 322
++ C P S + ++T++
Sbjct: 298 IVICCSPSSYNESETKS 314
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 122 bits (306), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 93/331 (28%), Positives = 156/331 (47%), Gaps = 25/331 (7%)
Query: 14 KKARVIAKIRGFADLEAESANWVCIQKPNGEDSDSVTVSFGEQPSSRKECYKLDYCYEQN 73
K +V+ ++R F E +++ ++ SV SSRK Y D + +
Sbjct: 17 KNIQVVVRVRPFNLAERKASAHSIVESDPVRKEVSVRTGGLADKSSRK-TYTFDMVFGAS 75
Query: 74 EGNGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQGS--------YEEPGLAAL 125
++ V P++ EV G NATI A G G+GKT ++G +EE LA +
Sbjct: 76 TKQIDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTMEGERSPNEEYCWEEDPLAGI 135
Query: 126 AVDEILSISEKMGK-----SITISFYEIFQDHVYDLLDPKQ---QEVQILENGQGK--IQ 175
+ I EK+ S+ +S EI+ + ++DLL+P + +Q+ ++ + K +
Sbjct: 136 IPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVI 195
Query: 176 LKGLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVS------PVSNF 229
+KGL ++ V + E ++ R + RSH V +
Sbjct: 196 IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEEL 255
Query: 230 LPTGKMNFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANESHVPYRESK 289
+ GK+N VDLAG ++I R E +N+S+ TL V+ AL HVPYRESK
Sbjct: 256 VKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESK 315
Query: 290 LTRMLQESLGCKSKILMLTCLLPRSVSTTKT 320
LTR+LQ+SLG +++ ++ + P S++ +T
Sbjct: 316 LTRILQDSLGGRTRTSIIATISPASLNLEET 346
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/317 (28%), Positives = 152/317 (47%), Gaps = 23/317 (7%)
Query: 17 RVIAKIRGFADLEAESANWVCIQKPNGEDSDSVTVSFGEQPSSRKECYKLDYCYEQNEGN 76
+V+ + R + E + + K GED TV +P Y D ++ +
Sbjct: 10 KVMCRFRPLNESEVNRGDKY-VAKFQGED----TVMIASKP------YAFDRVFQSSTSQ 58
Query: 77 GIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQGSYEEP---GLAALAVDEIL-- 131
++ K ++ +V G N TI A G SGK ++G +P G+ V +I
Sbjct: 59 EQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGKLHDPEGMGIIPRIVQDIFNY 118
Query: 132 --SISEKMGKSITISFYEIFQDHVYDLLDPKQQEVQILENGQGKIQLKGLSQVPVKSISE 189
S+ E + I +S++EI+ D + DLLD + + + E+ +KG ++ V S E
Sbjct: 119 IYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDE 178
Query: 190 FQKLYISMHNSRKPVQKITMD-LPRRSHKGLIVNVSPVSNFLP---TGKMNFVDLAGYQD 245
I S + V M+ RSH ++NV + +GK+ VDLAG +
Sbjct: 179 VMDT-IDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEK 237
Query: 246 IRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANESHVPYRESKLTRMLQESLGCKSKIL 305
+ + EG++ E +NKS+ L NV+ AL ++VPYR+SK+TR+LQ+SLG +
Sbjct: 238 VSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTT 297
Query: 306 MLTCLLPRSVSTTKTQT 322
++ C P S + ++T++
Sbjct: 298 IVICCSPSSYNESETKS 314
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/279 (30%), Positives = 145/279 (51%), Gaps = 18/279 (6%)
Query: 47 DSVTVSFGEQPSSRKECYKLDYCYEQNEGNGIIFAREVKPLISEVFNGINATIVACGAKG 106
D TV + RK+ + D ++ IF + K L+ +G N I A G G
Sbjct: 41 DEFTVEHPWKDDKRKQ-HIYDRVFDMRASQDDIF-EDTKYLVQSAVDGYNVCIFAYGQTG 98
Query: 107 SGKTRVIQGSYEEPGLAALAVDEILSISEKMGKSITISF----YEIFQDHVYDLLDPK-- 160
SGKT I G PGL A E+ +I ++ K + S E++QD + DLL PK
Sbjct: 99 SGKTFTIYGHESNPGLTPRATKELFNILKRDSKRFSFSLKAYMVELYQDTLVDLLLPKSA 158
Query: 161 -QQEVQILENGQGKIQLKGLSQVPVKSISEFQKLYISMHNSRKPVQKITM-DLPRRSHKG 218
+ +++I ++ +G + ++ ++ +P+ ++ E ++ + + R+ V M + RSH
Sbjct: 159 RRLKLEIKKDSKGMVFVENVTTIPISTLEEL-RMILERGSERRHVSGTNMNEESSRSH-- 215
Query: 219 LIVNVSPVSNFLPT-----GKMNFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVV 273
LI++V S L T GK++FVDLAG + +++ + G+ E +NKS+ L +V+
Sbjct: 216 LILSVVIESIDLQTQSAARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVI 275
Query: 274 YALNANESHVPYRESKLTRMLQESLGCKSKILMLTCLLP 312
AL++ H+PYR KLT ++ +SLG +K LM + P
Sbjct: 276 GALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSP 314
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 119 bits (298), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 88/328 (26%), Positives = 152/328 (46%), Gaps = 44/328 (13%)
Query: 17 RVIAKIRGFADLEAESANWVCIQKPNGEDSDSVTVSFGEQPSSRKECYKLDYCYEQNEGN 76
RV ++R E + C+Q V G R + ++ G
Sbjct: 14 RVALRVRPLLPKELLHGHQSCLQ---------VEPGLGRVTLGRDRHFGFHVVLAEDAGQ 64
Query: 77 GIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQGSYEEPGLAALAVDEILSISEK 136
++ V+PL+ F G NAT+ A G GSGKT + E +A+L DE +
Sbjct: 65 EAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMG----EASVASLLEDEQGIVPRA 120
Query: 137 MGKS-------------ITISFYEIFQDHVYDLLD--PKQQEVQILENGQGKIQLKGLSQ 181
M ++ + +S+ E++++ DLL+ +++Q+ E+ +G + L G+ +
Sbjct: 121 MAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVLCGVKE 180
Query: 182 VPVKSISEFQKLYISMHNSRKPVQKITMD-LPRRSHKGLIVNVS-----------PVSNF 229
V V+ + E L + M N+ + ++ L RSH V + P
Sbjct: 181 VDVEGLDEVLSL-LEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQ 239
Query: 230 LPTGKMNFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANE---SHVPYR 286
L K +FVDLAG + + + + G E+ ++N S+ L NV+ AL + SH+PYR
Sbjct: 240 LLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYR 299
Query: 287 ESKLTRMLQESLGCKSKILMLTCLLPRS 314
+SK+TR+L++SLG +K +M+ C+ P S
Sbjct: 300 DSKITRILKDSLGGNAKTVMIACVSPSS 327
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 119 bits (298), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 129/257 (50%), Gaps = 23/257 (8%)
Query: 79 IFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQG--------SYEEP---GLAALAV 127
+++ V PLI EV NG N T+ A G G+GKT + G S+E+ G+ A+
Sbjct: 84 VYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRAL 143
Query: 128 DEILSISEKMGKSIT--ISFYEIFQDHVYDLLDPKQQ-EVQILENG--QGKIQLKGLSQV 182
+ M T IS+ E++ + + DLL +++I ++ +G + ++GL ++
Sbjct: 144 SHLFDELRMMEVEYTMRISYLELYNEELCDLLSTDDTTKIRIFDDSTKKGSVIIQGLEEI 203
Query: 183 PVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVSPVSN------FLPTGKMN 236
PV S + KL RK + RSH + V N L GK+N
Sbjct: 204 PVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEGEDMLKIGKLN 263
Query: 237 FVDLAGYQDIRRKSTEGSIFV-ENTKVNKSIYTLFNVVYALNANESHVPYRESKLTRMLQ 295
VDLAG +++ + E I V E +N+S+ TL V+ AL HVPYRESKLTR+LQ
Sbjct: 264 LVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPHVPYRESKLTRLLQ 323
Query: 296 ESLGCKSKILMLTCLLP 312
ESLG ++K ++ + P
Sbjct: 324 ESLGGRTKTSIIATISP 340
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/331 (27%), Positives = 155/331 (46%), Gaps = 25/331 (7%)
Query: 14 KKARVIAKIRGFADLEAESANWVCIQKPNGEDSDSVTVSFGEQPSSRKECYKLDYCYEQN 73
K +V+ + R F E +++ ++ SV SSRK Y D + +
Sbjct: 8 KNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRK-TYTFDMVFGAS 66
Query: 74 EGNGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQG--------SYEEPGLAAL 125
++ V P++ EV G N TI A G G+GKT ++G ++EE LA +
Sbjct: 67 TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGI 126
Query: 126 AVDEILSISEKMGK-----SITISFYEIFQDHVYDLLDPKQ---QEVQILENGQGK--IQ 175
+ I EK+ S+ +S EI+ + ++DLL+P + +Q+ ++ + K +
Sbjct: 127 IPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVI 186
Query: 176 LKGLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVS------PVSNF 229
+KGL ++ V + E ++ R + RSH V +
Sbjct: 187 IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEEL 246
Query: 230 LPTGKMNFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANESHVPYRESK 289
+ GK+N VDLAG ++I R E +N+S+ TL V+ AL HVPYRESK
Sbjct: 247 VKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESK 306
Query: 290 LTRMLQESLGCKSKILMLTCLLPRSVSTTKT 320
LTR+LQ+SLG +++ ++ + P S++ +T
Sbjct: 307 LTRILQDSLGGRTRTSIIATISPASLNLEET 337
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/331 (27%), Positives = 155/331 (46%), Gaps = 25/331 (7%)
Query: 14 KKARVIAKIRGFADLEAESANWVCIQKPNGEDSDSVTVSFGEQPSSRKECYKLDYCYEQN 73
K +V+ + R F E +++ ++ SV SSRK Y D + +
Sbjct: 17 KNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRK-TYTFDMVFGAS 75
Query: 74 EGNGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQG--------SYEEPGLAAL 125
++ V P++ EV G N TI A G G+GKT ++G ++EE LA +
Sbjct: 76 TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGI 135
Query: 126 AVDEILSISEKMGK-----SITISFYEIFQDHVYDLLDPKQ---QEVQILENGQGK--IQ 175
+ I EK+ S+ +S EI+ + ++DLL+P + +Q+ ++ + K +
Sbjct: 136 IPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVI 195
Query: 176 LKGLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVS------PVSNF 229
+KGL ++ V + E ++ R + RSH V +
Sbjct: 196 IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEEL 255
Query: 230 LPTGKMNFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANESHVPYRESK 289
+ GK+N VDLAG ++I R E +N+S+ TL V+ AL HVPYRESK
Sbjct: 256 VKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESK 315
Query: 290 LTRMLQESLGCKSKILMLTCLLPRSVSTTKT 320
LTR+LQ+SLG +++ ++ + P S++ +T
Sbjct: 316 LTRILQDSLGGRTRTSIIATISPASLNLEET 346
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/331 (27%), Positives = 155/331 (46%), Gaps = 25/331 (7%)
Query: 14 KKARVIAKIRGFADLEAESANWVCIQKPNGEDSDSVTVSFGEQPSSRKECYKLDYCYEQN 73
K +V+ + R F E +++ ++ SV SSRK Y D + +
Sbjct: 17 KNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRK-TYTFDMVFGAS 75
Query: 74 EGNGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQG--------SYEEPGLAAL 125
++ V P++ EV G N TI A G G+GKT ++G ++EE LA +
Sbjct: 76 TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGI 135
Query: 126 AVDEILSISEKMGK-----SITISFYEIFQDHVYDLLDPKQ---QEVQILENGQGK--IQ 175
+ I EK+ S+ +S EI+ + ++DLL+P + +Q+ ++ + K +
Sbjct: 136 IPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVI 195
Query: 176 LKGLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVS------PVSNF 229
+KGL ++ V + E ++ R + RSH V +
Sbjct: 196 IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEEL 255
Query: 230 LPTGKMNFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANESHVPYRESK 289
+ GK+N VDLAG ++I R E +N+S+ TL V+ AL HVPYRESK
Sbjct: 256 VKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESK 315
Query: 290 LTRMLQESLGCKSKILMLTCLLPRSVSTTKT 320
LTR+LQ+SLG +++ ++ + P S++ +T
Sbjct: 316 LTRILQDSLGGRTRTSIIATISPASLNLEET 346
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/331 (27%), Positives = 155/331 (46%), Gaps = 25/331 (7%)
Query: 14 KKARVIAKIRGFADLEAESANWVCIQKPNGEDSDSVTVSFGEQPSSRKECYKLDYCYEQN 73
K +V+ + R F E +++ ++ SV SSRK Y D + +
Sbjct: 16 KNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRK-TYTFDMVFGAS 74
Query: 74 EGNGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQG--------SYEEPGLAAL 125
++ V P++ EV G N TI A G G+GKT ++G ++EE LA +
Sbjct: 75 TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGI 134
Query: 126 AVDEILSISEKMGK-----SITISFYEIFQDHVYDLLDPKQ---QEVQILENGQGK--IQ 175
+ I EK+ S+ +S EI+ + ++DLL+P + +Q+ ++ + K +
Sbjct: 135 IPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVI 194
Query: 176 LKGLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVS------PVSNF 229
+KGL ++ V + E ++ R + RSH V +
Sbjct: 195 IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEEL 254
Query: 230 LPTGKMNFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANESHVPYRESK 289
+ GK+N VDLAG ++I R E +N+S+ TL V+ AL HVPYRESK
Sbjct: 255 VKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESK 314
Query: 290 LTRMLQESLGCKSKILMLTCLLPRSVSTTKT 320
LTR+LQ+SLG +++ ++ + P S++ +T
Sbjct: 315 LTRILQDSLGGRTRTSIIATISPASLNLEET 345
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/331 (27%), Positives = 155/331 (46%), Gaps = 25/331 (7%)
Query: 14 KKARVIAKIRGFADLEAESANWVCIQKPNGEDSDSVTVSFGEQPSSRKECYKLDYCYEQN 73
K +V+ + R F E +++ ++ SV SSRK Y D + +
Sbjct: 19 KNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRK-TYTFDMVFGAS 77
Query: 74 EGNGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQG--------SYEEPGLAAL 125
++ V P++ EV G N TI A G G+GKT ++G ++EE LA +
Sbjct: 78 TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGI 137
Query: 126 AVDEILSISEKMGK-----SITISFYEIFQDHVYDLLDPKQ---QEVQILENGQGK--IQ 175
+ I EK+ S+ +S EI+ + ++DLL+P + +Q+ ++ + K +
Sbjct: 138 IPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVI 197
Query: 176 LKGLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVS------PVSNF 229
+KGL ++ V + E ++ R + RSH V +
Sbjct: 198 IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEEL 257
Query: 230 LPTGKMNFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANESHVPYRESK 289
+ GK+N VDLAG ++I R E +N+S+ TL V+ AL HVPYRESK
Sbjct: 258 VKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESK 317
Query: 290 LTRMLQESLGCKSKILMLTCLLPRSVSTTKT 320
LTR+LQ+SLG +++ ++ + P S++ +T
Sbjct: 318 LTRILQDSLGGRTRTSIIATISPASLNLEET 348
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/331 (27%), Positives = 155/331 (46%), Gaps = 25/331 (7%)
Query: 14 KKARVIAKIRGFADLEAESANWVCIQKPNGEDSDSVTVSFGEQPSSRKECYKLDYCYEQN 73
K +V+ + R F E +++ ++ SV SSRK Y D + +
Sbjct: 2 KNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRK-TYTFDMVFGAS 60
Query: 74 EGNGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQG--------SYEEPGLAAL 125
++ V P++ EV G N TI A G G+GKT ++G ++EE LA +
Sbjct: 61 TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGI 120
Query: 126 AVDEILSISEKMGK-----SITISFYEIFQDHVYDLLDPKQ---QEVQILENGQGK--IQ 175
+ I EK+ S+ +S EI+ + ++DLL+P + +Q+ ++ + K +
Sbjct: 121 IPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVI 180
Query: 176 LKGLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVS------PVSNF 229
+KGL ++ V + E ++ R + RSH V +
Sbjct: 181 IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEEL 240
Query: 230 LPTGKMNFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANESHVPYRESK 289
+ GK+N VDLAG ++I R E +N+S+ TL V+ AL HVPYRESK
Sbjct: 241 VKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESK 300
Query: 290 LTRMLQESLGCKSKILMLTCLLPRSVSTTKT 320
LTR+LQ+SLG +++ ++ + P S++ +T
Sbjct: 301 LTRILQDSLGGRTRTSIIATISPASLNLEET 331
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/265 (28%), Positives = 131/265 (49%), Gaps = 14/265 (5%)
Query: 64 YKLDYCYEQNEGNGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQGSYEEPGLA 123
+ D +++ +F KP++ NG N T++A GA G+GKT + GS +EPG+
Sbjct: 74 FVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVM 133
Query: 124 ALAVDEIL----SISEKMGKSITISFYEIFQDHVYDLLDPKQQEVQILENGQGKIQLKGL 179
L + + I E+ S +S+ E++ + + DLL + + E+ Q + + GL
Sbjct: 134 YLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLL-VNSGPLAVREDTQKGVVVHGL 192
Query: 180 SQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIV------NVSPVSNFLPTG 233
+ KS E L + + +R RSH + + ++ +
Sbjct: 193 TLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTASINQNVRIA 252
Query: 234 KMNFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANE---SHVPYRESKL 290
KM+ +DLAG + +G+ FVE T +N+S+ L NV+ AL ++ H+PYR SKL
Sbjct: 253 KMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKL 312
Query: 291 TRMLQESLGCKSKILMLTCLLPRSV 315
TR+L++SLG + +M+ + P SV
Sbjct: 313 TRLLKDSLGGNCQTIMIAAVSPSSV 337
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 92/331 (27%), Positives = 155/331 (46%), Gaps = 25/331 (7%)
Query: 14 KKARVIAKIRGFADLEAESANWVCIQKPNGEDSDSVTVSFGEQPSSRKECYKLDYCYEQN 73
K +V+ + R F E +++ ++ SV SSRK Y D + +
Sbjct: 17 KNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRK-TYTFDMVFGAS 75
Query: 74 EGNGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQG--------SYEEPGLAAL 125
++ V P++ EV G N TI A G G+GKT ++G ++EE LA +
Sbjct: 76 TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEVPLAGI 135
Query: 126 AVDEILSISEKMGK-----SITISFYEIFQDHVYDLLDPKQ---QEVQILENGQGK--IQ 175
+ I EK+ S+ +S EI+ + ++DLL+P + +Q+ ++ + K +
Sbjct: 136 IPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVI 195
Query: 176 LKGLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVS------PVSNF 229
+KGL ++ V + E ++ R + RSH V +
Sbjct: 196 IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEEL 255
Query: 230 LPTGKMNFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANESHVPYRESK 289
+ GK+N VDLAG ++I R E +N+S+ TL V+ AL HVPYRESK
Sbjct: 256 VKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESK 315
Query: 290 LTRMLQESLGCKSKILMLTCLLPRSVSTTKT 320
LTR+LQ+SLG +++ ++ + P S++ +T
Sbjct: 316 LTRILQDSLGGRTRTSIIATISPASLNLEET 346
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 87/328 (26%), Positives = 153/328 (46%), Gaps = 44/328 (13%)
Query: 17 RVIAKIRGFADLEAESANWVCIQKPNGEDSDSVTVSFGEQPSSRKECYKLDYCYEQNEGN 76
RV ++R E + C+Q V G R + ++ G
Sbjct: 14 RVALRVRPLLPKELLHGHQSCLQ---------VEPGLGRVTLGRDRHFGFHVVLAEDAGQ 64
Query: 77 GIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQGSYEEPGLAALAVDEILSISEK 136
++ V+PL+ F G NAT+ A G GSGKT + E +A+L DE +
Sbjct: 65 EAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMG----EASVASLLEDEQGIVPRA 120
Query: 137 MGKS-------------ITISFYEIFQDHVYDLLD--PKQQEVQILENGQGKIQLKGLSQ 181
M ++ + +S+ E++++ DLL+ +++Q+ E+ +G + L G+ +
Sbjct: 121 MAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVLCGVKE 180
Query: 182 VPVKSISEFQKLYISMHNSRKPVQKITMD-LPRRSHKGLIVNVS-----------PVSNF 229
V V+ + E L + M N+ + ++ L RSH V + P
Sbjct: 181 VDVEGLDEVLSL-LEMGNAARHTGATHLNHLSSRSHTVFTVTLKQRGRAPSRLPRPAPGQ 239
Query: 230 LPTGKMNFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANE---SHVPYR 286
L K +FVDLAG + + + + G + E+ ++N S+ L NV+ AL + S++PYR
Sbjct: 240 LLVSKFHFVDLAGSERVLKTGSTGELRKESIQINSSLLALGNVISALGDPQRRGSNIPYR 299
Query: 287 ESKLTRMLQESLGCKSKILMLTCLLPRS 314
+SK+TR+L++SLG +K +M+ C+ P S
Sbjct: 300 DSKITRILKDSLGGNAKTVMIACVSPSS 327
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/331 (27%), Positives = 154/331 (46%), Gaps = 25/331 (7%)
Query: 14 KKARVIAKIRGFADLEAESANWVCIQKPNGEDSDSVTVSFGEQPSSRKECYKLDYCYEQN 73
K +V+ + R F E +++ ++ SV SSRK Y D + +
Sbjct: 17 KNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRK-TYTFDMVFGAS 75
Query: 74 EGNGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQG--------SYEEPGLAAL 125
++ V P++ EV G N TI A G G+GKT ++G ++EE L +
Sbjct: 76 TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLDGI 135
Query: 126 AVDEILSISEKMGK-----SITISFYEIFQDHVYDLLDPKQ---QEVQILENGQGK--IQ 175
+ I EK+ S+ +S EI+ + ++DLL+P + +Q+ ++ + K +
Sbjct: 136 IPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVI 195
Query: 176 LKGLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVS------PVSNF 229
+KGL ++ V + E ++ R + RSH V +
Sbjct: 196 IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEEL 255
Query: 230 LPTGKMNFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANESHVPYRESK 289
+ GK+N VDLAG ++I R E +N+S+ TL V+ AL HVPYRESK
Sbjct: 256 VKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESK 315
Query: 290 LTRMLQESLGCKSKILMLTCLLPRSVSTTKT 320
LTR+LQ+SLG +++ ++ + P S++ +T
Sbjct: 316 LTRILQDSLGGRTRTSIIATISPASLNLEET 346
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 133/264 (50%), Gaps = 16/264 (6%)
Query: 62 ECYKLDYCYEQNEGNGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQGSYE--- 118
+ + D+ +++ N +++ +PL+ +F G AT A G GSGKT + G
Sbjct: 101 QAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKA 160
Query: 119 ---EPGLAALAVDEILSIS-----EKMGKSITISFYEIFQDHVYDLLDPKQQEVQILENG 170
G+ A+A ++ + K+G + ++F+EI+ ++DLL+ K+ ++++LE+G
Sbjct: 161 QNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLN-KKAKLRVLEDG 219
Query: 171 QGKIQLKGLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVSPVSNFL 230
+ ++Q+ GL + V S + K+ R Q RSH + +
Sbjct: 220 KQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKGRM- 278
Query: 231 PTGKMNFVDLAGYQ-DIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANESHVPYRESK 289
GK + VDLAG + S + +E ++NKS+ L + AL N++H P+RESK
Sbjct: 279 -HGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESK 337
Query: 290 LTRMLQES-LGCKSKILMLTCLLP 312
LT++L++S +G S+ M+ + P
Sbjct: 338 LTQVLRDSFIGENSRTCMIATISP 361
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 108 bits (270), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 134/263 (50%), Gaps = 18/263 (6%)
Query: 64 YKLDYCYEQNEGNGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQGSYEEPGLA 123
+ D +E+ + N ++F E+ LI +G N + A G GSGKT + S+ G+
Sbjct: 432 FLFDKIFEREQSNDLVF-EELSQLIQCSLDGTNVCVFAYGQTGSGKTFTM--SHPTNGMI 488
Query: 124 ALAVDEILSISEKM---GKSITI--SFYEIFQDHVYDLLDPK-----QQEVQILENGQGK 173
L++ +I + E++ G S T+ F EI+ + + DLL+PK + E++ ++ GK
Sbjct: 489 PLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNPKIDPNTKYEIK-HDDIAGK 547
Query: 174 IQLKGLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVSPVSNFL--- 230
+ +S + +KS + + + R + D RSH I+++ ++
Sbjct: 548 TTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGYNSLTKES 607
Query: 231 PTGKMNFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANE-SHVPYRESK 289
G +N +DLAG + + EG E +NKS+ L +V+++LN + SHVPYR SK
Sbjct: 608 SYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNSK 667
Query: 290 LTRMLQESLGCKSKILMLTCLLP 312
LT +L+ SLG SK LM + P
Sbjct: 668 LTYLLKHSLGGNSKTLMFVNISP 690
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 134/270 (49%), Gaps = 16/270 (5%)
Query: 64 YKLDYCYEQNEGNGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQGSYE----- 118
++ DY ++ + N +++ +PL+ +F AT A G GSGKT + G +
Sbjct: 141 FRFDYAFDDSAPNEMVYRFTARPLVETIFERGMATCFAYGQTGSGKTHTMGGDFSGKNQD 200
Query: 119 -EPGLAALAVDEILSI-----SEKMGKSITISFYEIFQDHVYDLLDPKQQEVQILENGQG 172
G+ ALA ++ + +K+ + +F+EI+ V+DLL+ K + +++LE+G+
Sbjct: 201 CSKGIYALAARDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLLNRKTK-LRVLEDGKQ 259
Query: 173 KIQLKGLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVSPVSNFLPT 232
++Q+ GL + VK + + KL ++ R Q RSH + +
Sbjct: 260 QVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGKL--H 317
Query: 233 GKMNFVDLAGYQ-DIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANESHVPYRESKLT 291
GK + +DLAG + S + +E ++NKS+ L + AL N+ H P+R SKLT
Sbjct: 318 GKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKPHTPFRASKLT 377
Query: 292 RMLQES-LGCKSKILMLTCLLPRSVSTTKT 320
++L++S +G S+ M+ + P S T
Sbjct: 378 QVLRDSFIGENSRTCMIATISPGMASCENT 407
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 80/278 (28%), Positives = 134/278 (48%), Gaps = 30/278 (10%)
Query: 64 YKLDYCY--------EQNEGNGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQG 115
+ D+C+ E+ G I+F + ++ F+G NA I A G GSGK+ + G
Sbjct: 53 FAYDHCFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMG 112
Query: 116 SYEEPGLAALAVDEILSISEK-----MGKSITISFYEIFQDHVYDLLDPK--QQEVQILE 168
+ ++PGL + ++K + +S+ EI+ + V DLLDPK +Q +++ E
Sbjct: 113 TADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVRE 172
Query: 169 NGQGKIQLKGLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGL-------IV 221
+ + GLS++ V S + + L + SR + RSH +
Sbjct: 173 HSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLY 232
Query: 222 NVSPVSNFLPTGKMNFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANES 281
+V ++ GK++ VDLAG + + G E + +NKS+ TL V+ AL A++S
Sbjct: 233 DVKSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISAL-ADQS 291
Query: 282 -------HVPYRESKLTRMLQESLGCKSKILMLTCLLP 312
VPYR+S LT +L++SLG SK M+ + P
Sbjct: 292 AGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSP 329
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 130/264 (49%), Gaps = 16/264 (6%)
Query: 62 ECYKLDYCYEQNEGNGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQGSYE--- 118
+ + D+ +++ N +++ +PL+ +F G AT A G GSGKT + G
Sbjct: 121 QAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKS 180
Query: 119 ---EPGLAALAVDEILSISEK-----MGKSITISFYEIFQDHVYDLLDPKQQEVQILENG 170
G+ A+A ++ + + + + ++F+EI+ V+DLL+ K+ ++++LE+
Sbjct: 181 QNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLN-KKAKLRVLEDS 239
Query: 171 QGKIQLKGLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVSPVSNFL 230
+ ++Q+ GL + V + K+ R Q RSH + +
Sbjct: 240 RQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGRL- 298
Query: 231 PTGKMNFVDLAGYQ-DIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANESHVPYRESK 289
GK + VDLAG + S + +E ++NKS+ L + AL N++H P+RESK
Sbjct: 299 -HGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESK 357
Query: 290 LTRMLQES-LGCKSKILMLTCLLP 312
LT++L++S +G S+ M+ + P
Sbjct: 358 LTQVLRDSFIGENSRTCMIAMISP 381
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 130/264 (49%), Gaps = 16/264 (6%)
Query: 62 ECYKLDYCYEQNEGNGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQGSYE--- 118
+ + D+ +++ N +++ +PL+ +F G AT A G GSGKT + G
Sbjct: 49 QAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKS 108
Query: 119 ---EPGLAALAVDEILSISEK-----MGKSITISFYEIFQDHVYDLLDPKQQEVQILENG 170
G+ A+A ++ + + + + ++F+EI+ V+DLL+ K+ ++++LE+
Sbjct: 109 QNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLN-KKAKLRVLEDS 167
Query: 171 QGKIQLKGLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVSPVSNFL 230
+ ++Q+ GL + V + K+ R Q RSH + +
Sbjct: 168 RQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGRL- 226
Query: 231 PTGKMNFVDLAGYQ-DIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANESHVPYRESK 289
GK + VDLAG + S + +E ++NKS+ L + AL N++H P+RESK
Sbjct: 227 -HGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESK 285
Query: 290 LTRMLQES-LGCKSKILMLTCLLP 312
LT++L++S +G S+ M+ + P
Sbjct: 286 LTQVLRDSFIGENSRTCMIAMISP 309
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 97/350 (27%), Positives = 170/350 (48%), Gaps = 51/350 (14%)
Query: 17 RVIAKIRGFADLEAESANWVCIQKPNGEDSDSVTVS-----FGEQPSSRKECYK------ 65
+V+ + R ++LE + +DSD +TV + ++P + + K
Sbjct: 3 KVVVRKRPLSELEKKK-----------KDSDIITVKNNCTLYIDEPRYKVDMTKYIERHE 51
Query: 66 --LDYCYEQNEGNGIIFAREVKPLISEVF-NGINATIVACGAKGSGKTRVIQGSY----- 117
+D ++ N ++ +KPLI +++ NG + A G GSGKT + GS
Sbjct: 52 FIVDKVFDDTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQS 111
Query: 118 EEPGLAALAVDEI---LSISEKMG-KSITISFYEIFQDHVYDLLDPKQQEVQILENGQGK 173
+ PG+ A +I L+I +K K I ISFYEI+ +YDLL K++ V LENG+ +
Sbjct: 112 DTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQ-KRKMVAALENGKKE 170
Query: 174 IQLKGLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVSPVSNFLPTG 233
+ +K L + V + E I RK D RSH L +++ ++ G
Sbjct: 171 VVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDINKNTSLG 230
Query: 234 KMNFVDLAGYQDIRRKSTEGSIFVENTK--------VNKSIYTLFNVVYALNANESHVPY 285
K+ F+DLAG S G+ V K +N+S+ L + A++++++H+P+
Sbjct: 231 KIAFIDLAG-------SERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPF 283
Query: 286 RESKLTRMLQESLGCKSKILMLTCLLPRSVSTTKTQTGSQMHSSTKKATG 335
R+S+LT++L++ KSK +M+ + P ++S + + +SS K G
Sbjct: 284 RDSELTKVLRDIFVGKSKSIMIANISP-TISCCEQTLNTLRYSSRVKNKG 332
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 90/318 (28%), Positives = 144/318 (45%), Gaps = 20/318 (6%)
Query: 7 DTGLNISKKARVIAKIRGFADLEAESANWVCIQKPNGEDSDSVTVSFGEQPSSR--KECY 64
+T +++ RV +IR LE+E N +C ++S S Q S+ ++ +
Sbjct: 52 NTVMDLRDNIRVFCRIR--PPLESEE-NRMCCTWTYHDESTVELQSIDAQAKSKMGQQIF 108
Query: 65 KLDYCYEQNEGNGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQGSYEEPGLAA 124
D + IF V PLI +G N I A G GSGKT + G E G+
Sbjct: 109 SFDQVFHPLSSQSDIFEM-VSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIP 167
Query: 125 LAVDEIL-SIS--EKMG--KSITISFYEIFQDHVYDLLDPKQQ--EVQILENGQGKIQLK 177
VD + SI +G I +F EI+ + +YDLL +Q+ E+++ +N + I +
Sbjct: 168 RTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVS 227
Query: 178 GLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSH---KGLIVNVSPVSNFLPTGK 234
+++ V + + L + +R + RSH K ++ + G
Sbjct: 228 NITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGS 287
Query: 235 MNFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANESHVPYRESKLTRML 294
+N VDLAG + + + E +N+S+ L NV+ AL + H+PYR SKLT +L
Sbjct: 288 INLVDLAGSESPKTSTR----MTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLL 343
Query: 295 QESLGCKSKILMLTCLLP 312
SLG SK LM + P
Sbjct: 344 MPSLGGNSKTLMFINVSP 361
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/318 (28%), Positives = 144/318 (45%), Gaps = 20/318 (6%)
Query: 7 DTGLNISKKARVIAKIRGFADLEAESANWVCIQKPNGEDSDSVTVSFGEQPSSR--KECY 64
+T +++ RV +IR LE+E N +C ++S S Q S+ ++ +
Sbjct: 49 NTVMDLRGNIRVFCRIR--PPLESEE-NRMCCTWTYHDESTVELQSIDAQAKSKMGQQIF 105
Query: 65 KLDYCYEQNEGNGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQGSYEEPGLAA 124
D + IF V PLI +G N I A G GSGKT + G E G+
Sbjct: 106 SFDQVFHPLSSQSDIFEM-VSPLIQSALDGYNICIFAYGQSGSGKTYTMDGVPESVGVIP 164
Query: 125 LAVDEIL-SIS--EKMG--KSITISFYEIFQDHVYDLLDPKQQ--EVQILENGQGKIQLK 177
VD + SI +G I +F EI+ + +YDLL +Q+ E+++ +N + I +
Sbjct: 165 RTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVS 224
Query: 178 GLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSH---KGLIVNVSPVSNFLPTGK 234
+++ V + + L + +R + RSH K ++ + G
Sbjct: 225 NITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGS 284
Query: 235 MNFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANESHVPYRESKLTRML 294
+N VDLAG + + + E +N+S+ L NV+ AL + H+PYR SKLT +L
Sbjct: 285 INLVDLAGSESPKTSTR----MTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLL 340
Query: 295 QESLGCKSKILMLTCLLP 312
SLG SK LM + P
Sbjct: 341 MPSLGGNSKTLMFINVSP 358
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/318 (28%), Positives = 144/318 (45%), Gaps = 20/318 (6%)
Query: 7 DTGLNISKKARVIAKIRGFADLEAESANWVCIQKPNGEDSDSVTVSFGEQPSSR--KECY 64
+T +++ RV +IR LE+E N +C ++S S Q S+ ++ +
Sbjct: 46 NTVMDLRGNIRVFCRIR--PPLESEE-NRMCCTWTYHDESTVELQSIDAQAKSKMGQQIF 102
Query: 65 KLDYCYEQNEGNGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQGSYEEPGLAA 124
D + IF V PLI +G N I A G GSGKT + G E G+
Sbjct: 103 SFDQVFHPLSSQSDIFEM-VSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIP 161
Query: 125 LAVDEIL-SIS--EKMG--KSITISFYEIFQDHVYDLLDPKQQ--EVQILENGQGKIQLK 177
VD + SI +G I +F EI+ + +YDLL +Q+ E+++ +N + I +
Sbjct: 162 RTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVS 221
Query: 178 GLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSH---KGLIVNVSPVSNFLPTGK 234
+++ V + + L + +R + RSH K ++ + G
Sbjct: 222 NITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGS 281
Query: 235 MNFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANESHVPYRESKLTRML 294
+N VDLAG + + + E +N+S+ L NV+ AL + H+PYR SKLT +L
Sbjct: 282 INLVDLAGSESPKTSTR----MTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLL 337
Query: 295 QESLGCKSKILMLTCLLP 312
SLG SK LM + P
Sbjct: 338 MPSLGGNSKTLMFINVSP 355
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/318 (28%), Positives = 144/318 (45%), Gaps = 20/318 (6%)
Query: 7 DTGLNISKKARVIAKIRGFADLEAESANWVCIQKPNGEDSDSVTVSFGEQPSSR--KECY 64
+T +++ RV +IR LE+E N +C ++S S Q S+ ++ +
Sbjct: 60 NTVMDLRGNIRVFCRIR--PPLESEE-NRMCCTWTYHDESTVELQSIDAQAKSKMGQQIF 116
Query: 65 KLDYCYEQNEGNGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQGSYEEPGLAA 124
D + IF V PLI +G N I A G GSGKT + G E G+
Sbjct: 117 SFDQVFHPLSSQSDIFEM-VSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIP 175
Query: 125 LAVDEIL-SIS--EKMG--KSITISFYEIFQDHVYDLLDPKQQ--EVQILENGQGKIQLK 177
VD + SI +G I +F EI+ + +YDLL +Q+ E+++ +N + I +
Sbjct: 176 RTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVS 235
Query: 178 GLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSH---KGLIVNVSPVSNFLPTGK 234
+++ V + + L + +R + RSH K ++ + G
Sbjct: 236 NITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGS 295
Query: 235 MNFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANESHVPYRESKLTRML 294
+N VDLAG + + + E +N+S+ L NV+ AL + H+PYR SKLT +L
Sbjct: 296 INLVDLAGSESPKTSTR----MTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLL 351
Query: 295 QESLGCKSKILMLTCLLP 312
SLG SK LM + P
Sbjct: 352 MPSLGGNSKTLMFINVSP 369
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 89/318 (27%), Positives = 143/318 (44%), Gaps = 20/318 (6%)
Query: 7 DTGLNISKKARVIAKIRGFADLEAESANWVCIQKPNGEDSDSVTVSFGEQPSSR--KECY 64
+T +++ RV +IR LE+E N +C ++S S Q S+ ++ +
Sbjct: 49 NTVMDLRGNIRVFCRIR--PPLESEE-NRMCCTWTYHDESTVELQSIDAQAKSKMGQQIF 105
Query: 65 KLDYCYEQNEGNGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQGSYEEPGLAA 124
D + IF V PLI +G N I A G GSGKT + G E G+
Sbjct: 106 SFDQVFHPLSSQSDIFEM-VSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIP 164
Query: 125 LAVDEIL-SIS--EKMG--KSITISFYEIFQDHVYDLLDPKQQ--EVQILENGQGKIQLK 177
VD + SI +G I +F EI+ + +YDLL +Q+ E+++ +N + I +
Sbjct: 165 RTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVS 224
Query: 178 GLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSH---KGLIVNVSPVSNFLPTGK 234
+++ V + + L + +R + RSH K ++ + G
Sbjct: 225 NITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGS 284
Query: 235 MNFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANESHVPYRESKLTRML 294
+N VDLAG + + + E + +S+ L NV+ AL + H+PYR SKLT +L
Sbjct: 285 INLVDLAGSESPKTSTR----MTETKNIKRSLSELTNVILALLQKQDHIPYRNSKLTHLL 340
Query: 295 QESLGCKSKILMLTCLLP 312
SLG SK LM + P
Sbjct: 341 MPSLGGNSKTLMFINVSP 358
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 95.5 bits (236), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 136/266 (51%), Gaps = 26/266 (9%)
Query: 64 YKLDYCYEQNEGNGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQGS---YEEP 120
+KLD + +++ K ++S+ +G N TI+ G G+GKT + G+ Y+
Sbjct: 74 FKLDGVL-HDASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHR 132
Query: 121 GLAALAVDEILS-ISEKMGKSITI--SFYEIFQDHVYDLLD------PKQQEVQILENGQ 171
G+ A+ ++ I E+ +IT+ S+ EI+ + ++DLL P + I+EN Q
Sbjct: 133 GILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLSTLPYVGPSVTPMTIVENPQ 192
Query: 172 GKIQLKGLSQVPVKSISE--FQKLYISMHNSRKPVQKITMDL-PRRSHKGLIVNVSPVSN 228
G + +KGLS V + S E F L+ N + + TM+ RSH + + S
Sbjct: 193 G-VFIKGLS-VHLTSQEEDAFSLLFEGETN--RIIASHTMNKNSSRSHCIFTIYLEAHSR 248
Query: 229 FLP-----TGKMNFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYAL-NANESH 282
L T K+N VDLAG + + + +EG + E T +NKS+ L + AL + H
Sbjct: 249 TLSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDH 308
Query: 283 VPYRESKLTRMLQESLGCKSKILMLT 308
+P+R+ KLT L++SLG ++++T
Sbjct: 309 IPFRQCKLTHALKDSLGGNCNMVLVT 334
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 95.1 bits (235), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 79/268 (29%), Positives = 122/268 (45%), Gaps = 53/268 (19%)
Query: 92 FNGINATIVACGAKGSGKTRVIQGSYEEPGLA-----------ALAVDEILSISEKMGKS 140
F G + I A G GSGK+ + G+ ++PGL A A DE +IS +
Sbjct: 133 FEGYHTCIFAYGQTGSGKSYTMMGTPDQPGLIPRTCEDLFQRIASAQDETPNIS----YN 188
Query: 141 ITISFYEIFQDHVYDLLDP-----KQQEVQILENGQGKIQLKGLSQVPVKSISEFQKLYI 195
+ +S++E++ +HV DLL P +++ E+ +K L++VPV+ + E +
Sbjct: 189 VKVSYFEVYNEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMR 248
Query: 196 SMHNSRKPVQKITMDLPRRSHKGLIVNVSPVSNFLPT-------GKMNFVDLAGYQDIRR 248
SR D RSH + + + + L T ++ VDLAG + R
Sbjct: 249 IGDGSRTVASTKMNDTSSRSHAVFTIMLKQIHHDLETDDTTERSSRIRLVDLAGSE--RA 306
Query: 249 KSTE--GSIFVENTKVNKSIYTLFNVVYALNANESH----------------------VP 284
KSTE G E + +NKS+ TL V+ AL +S VP
Sbjct: 307 KSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVP 366
Query: 285 YRESKLTRMLQESLGCKSKILMLTCLLP 312
YR+S LT +L++SLG SK M+ C+ P
Sbjct: 367 YRDSVLTWLLKDSLGGNSKTAMIACISP 394
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 86/339 (25%), Positives = 155/339 (45%), Gaps = 39/339 (11%)
Query: 17 RVIAKIRGFADLEAESANWVCIQKPNGEDSDSVTVSFGEQPSSRKECYKLDYCY-EQNEG 75
+V ++R F E S + CI + +G + T+ +QP + + DY Y
Sbjct: 23 KVAVRVRPFNSREM-SRDSKCIIQMSGS---TTTIVNPKQPKETPKSFSFDYSYWSHTSP 78
Query: 76 NGIIFA------REV-KPLISEVFNGINATIVACGAKGSGKTRVIQGSYE--EPGLAALA 126
I +A R++ + ++ F G N I A G G+GK+ + G E + G+
Sbjct: 79 EDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQL 138
Query: 127 VDEILS-----ISEKMGKSITISFYEIFQDHVYDLLDPKQQ-EVQILENGQGKIQLKGLS 180
+++ S ++ M S+ +S+ EI+ + V DLL+PK + +++ E+ ++ LS
Sbjct: 139 CEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLS 198
Query: 181 QVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVSPVSNFLPT-------G 233
++ V S ++ Q L S + +R + RSH + + + T
Sbjct: 199 KLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVS 258
Query: 234 KMNFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANES------------ 281
K++ VDLAG + +G+ E +NKS+ TL V+ AL +S
Sbjct: 259 KISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTD 318
Query: 282 HVPYRESKLTRMLQESLGCKSKILMLTCLLPRSVSTTKT 320
+PYR+S LT +L+E+LG S+ M+ L P ++ +T
Sbjct: 319 FIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDET 357
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 88/333 (26%), Positives = 152/333 (45%), Gaps = 40/333 (12%)
Query: 17 RVIAKIRGFADLEAESANWVCIQKPNGEDSD-SVTVSFGEQPSSRKECYKLDYCYEQNEG 75
RV +IR E ++ + +Q + ++ D +T++ G +S+ +K D ++Q E
Sbjct: 31 RVYCRIRPPLPHEDDNIEHIKVQPFDDDNGDQGMTINRG---NSQVIPFKFDKIFDQQET 87
Query: 76 NGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQGSYEEPGLAALAVDEILSISE 135
N IF +EV LI +G N I A G GSGKT + + G+ ++ I S +
Sbjct: 88 NDEIF-KEVGQLIQSSLDGYNVCIFAYGQTGSGKTYTMLNPGD--GIVPATINHIFSWID 144
Query: 136 KMGK-----SITISFYEIFQDHVYDLLD---PKQQEVQILENGQGKIQLKGLSQVPVKSI 187
K+ ++ F EI+ +++ DLL P Q+ N K +++ ++ I
Sbjct: 145 KLAARGWSYKVSCEFIEIYNENIVDLLRSGAPSQENND--RNADSKHEIRHDQELKTTYI 202
Query: 188 SEFQKLYISMHNSRKPVQKI--------------TMDLPRRSHKGLIVNV---SPVSNFL 230
+ + +SR V K+ + RSH I+++ + +
Sbjct: 203 TNITTCVL---DSRDTVDKVLKRANKLRSTASTAANEHSSRSHSIFIIHLEGKNEGTGEK 259
Query: 231 PTGKMNFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNA---NESHVPYRE 287
G +N VDLAG + + G E +NKS+ L +V++ALN+ + H+P+R
Sbjct: 260 SQGILNLVDLAGSERLNSSMVVGERLRETQSINKSLSCLGDVIHALNSPDGQKRHIPFRN 319
Query: 288 SKLTRMLQESLGCKSKILMLTCLLPRSVSTTKT 320
SKLT +LQ SL SK LM + P ++ +T
Sbjct: 320 SKLTYLLQYSLIGSSKTLMFVNISPAALHLNET 352
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 86/339 (25%), Positives = 155/339 (45%), Gaps = 39/339 (11%)
Query: 17 RVIAKIRGFADLEAESANWVCIQKPNGEDSDSVTVSFGEQPSSRKECYKLDYCY-EQNEG 75
+V ++R F E S + CI + +G + T+ +QP + + DY Y
Sbjct: 7 KVAVRVRPFNSREM-SRDSKCIIQMSGS---TTTIVNPKQPKETPKSFSFDYSYWSHTSP 62
Query: 76 NGIIFA------REV-KPLISEVFNGINATIVACGAKGSGKTRVIQGSYE--EPGLAALA 126
I +A R++ + ++ F G N I A G G+GK+ + G E + G+
Sbjct: 63 EDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQL 122
Query: 127 VDEILS-----ISEKMGKSITISFYEIFQDHVYDLLDPKQQ-EVQILENGQGKIQLKGLS 180
+++ S ++ M S+ +S+ EI+ + V DLL+PK + +++ E+ ++ LS
Sbjct: 123 CEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLS 182
Query: 181 QVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVSPVSNFLPT-------G 233
++ V S ++ Q L S + +R + RSH + + + T
Sbjct: 183 KLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVS 242
Query: 234 KMNFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANES------------ 281
K++ VDLAG + +G+ E +NKS+ TL V+ AL +S
Sbjct: 243 KISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTD 302
Query: 282 HVPYRESKLTRMLQESLGCKSKILMLTCLLPRSVSTTKT 320
+PYR+S LT +L+E+LG S+ M+ L P ++ +T
Sbjct: 303 FIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDET 341
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 86/339 (25%), Positives = 155/339 (45%), Gaps = 39/339 (11%)
Query: 17 RVIAKIRGFADLEAESANWVCIQKPNGEDSDSVTVSFGEQPSSRKECYKLDYCY-EQNEG 75
+V ++R F E S + CI + +G + T+ +QP + + DY Y
Sbjct: 7 KVAVRVRPFNSREM-SRDSKCIIQMSGS---TTTIVNPKQPKETPKSFSFDYSYWSHTSP 62
Query: 76 NGIIFA------REV-KPLISEVFNGINATIVACGAKGSGKTRVIQGSYE--EPGLAALA 126
I +A R++ + ++ F G N I A G G+GK+ + G E + G+
Sbjct: 63 EDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQL 122
Query: 127 VDEILS-----ISEKMGKSITISFYEIFQDHVYDLLDPKQQ-EVQILENGQGKIQLKGLS 180
+++ S ++ M S+ +S+ EI+ + V DLL+PK + +++ E+ ++ LS
Sbjct: 123 CEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLS 182
Query: 181 QVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVSPVSNFLPTG------- 233
++ V S ++ Q L S + +R + RSH + + + T
Sbjct: 183 KLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVS 242
Query: 234 KMNFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANES------------ 281
K++ VDLAG + +G+ E +NKS+ TL V+ AL +S
Sbjct: 243 KISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTD 302
Query: 282 HVPYRESKLTRMLQESLGCKSKILMLTCLLPRSVSTTKT 320
+PYR+S LT +L+E+LG S+ M+ L P ++ +T
Sbjct: 303 FIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDET 341
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 86/339 (25%), Positives = 154/339 (45%), Gaps = 39/339 (11%)
Query: 17 RVIAKIRGFADLEAESANWVCIQKPNGEDSDSVTVSFGEQPSSRKECYKLDYCY-EQNEG 75
+V ++R F E S + CI + +G + T+ +QP + + DY Y
Sbjct: 7 KVAVRVRPFNSREM-SRDSKCIIQMSGS---TTTIVNPKQPKETPKSFSFDYSYWSHTSP 62
Query: 76 NGIIFA------REV-KPLISEVFNGINATIVACGAKGSGKTRVIQGSYE--EPGLAALA 126
I +A R++ + ++ F G N I A G G+GK+ + G E + G+
Sbjct: 63 EDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQL 122
Query: 127 VDEILS-----ISEKMGKSITISFYEIFQDHVYDLLDPKQQ-EVQILENGQGKIQLKGLS 180
+++ S ++ M S+ +S+ EI+ + V DLL+PK + +++ E+ ++ LS
Sbjct: 123 CEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLS 182
Query: 181 QVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVSPVSNFLPTG------- 233
++ V S ++ Q L S + R + RSH + + + T
Sbjct: 183 KLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVS 242
Query: 234 KMNFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANES------------ 281
K++ VDLAG + +G+ E +NKS+ TL V+ AL +S
Sbjct: 243 KISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTD 302
Query: 282 HVPYRESKLTRMLQESLGCKSKILMLTCLLPRSVSTTKT 320
+PYR+S LT +L+E+LG S+ M+ L P ++ +T
Sbjct: 303 FIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDET 341
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/325 (25%), Positives = 149/325 (45%), Gaps = 38/325 (11%)
Query: 17 RVIAKIRGFADLEAESANWVCIQKPN-GEDSDSVTVSFGEQPSSRKECY--KLDYCYEQN 73
RV ++R E + + + I+K N + + S+T++ E R Y + D +E +
Sbjct: 8 RVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNE---GRILSYNFQFDMIFEPS 64
Query: 74 EGNGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQGSYEEPGLAALAVDEILSI 133
N IF E++ L+ +G N I A G GSGKT + + + G+ + + I
Sbjct: 65 HTNKEIF-EEIRQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNAGD--GMIPMTLSHIFKW 121
Query: 134 SEKMGK-----SITISFYEIFQDHVYDLL-------------DPKQQEVQILENGQGKIQ 175
+ + + + + EI+ + + DLL D ++ +++ QG
Sbjct: 122 TANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQKHDIRHDHEKQGTY- 180
Query: 176 LKGLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVSPVSNFLPTG-- 233
+ ++++ + S S+ + R + + RSH +V+++ + L TG
Sbjct: 181 ITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRN--LHTGET 238
Query: 234 ---KMNFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALN---ANESHVPYRE 287
K+N VDLAG + I + G E +NKS+ L +V+YALN A + ++P+R
Sbjct: 239 SQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRN 298
Query: 288 SKLTRMLQESLGCKSKILMLTCLLP 312
SKLT +LQ SL SK LM + P
Sbjct: 299 SKLTYLLQYSLVGDSKTLMFVNIPP 323
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 86/291 (29%), Positives = 129/291 (44%), Gaps = 25/291 (8%)
Query: 45 DSDSVTVSFGEQPSSRKECYKLDYCYEQNEGNGIIFAREVKPLISEVFNGINATIVACGA 104
D T+S P R + + D + G +F E+ L+ +G I A G
Sbjct: 67 DERRGTLSGAPAPPPRHD-FSFDRVFPPGSGQDEVF-EEIAMLVQSALDGYPVCIFAYGQ 124
Query: 105 KGSGKTRVIQGS-YEEP---GLAALAVDEILSISEKM-GKSITISFY----EIFQDHVYD 155
GSGKT ++G +P GL A+ + S+++++ G+ T SF EI+ + V D
Sbjct: 125 TGSGKTFTMEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRD 184
Query: 156 LLDPKQQ-----EVQILENGQG--KIQLKGLSQVPVKSISEFQKLYISMHNSRKPVQKIT 208
LL + E +I G G ++ + VPV E L +R +
Sbjct: 185 LLATGTRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQ 244
Query: 209 MDLPRRSHKGLIVNVSP--VSNFLPTGK-MNFVDLAGYQ----DIRRKSTEGSIFVENTK 261
+ RSH + +S S L G ++ VDLAG + + E E
Sbjct: 245 NERSSRSHSVFQLQISGEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQA 304
Query: 262 VNKSIYTLFNVVYALNANESHVPYRESKLTRMLQESLGCKSKILMLTCLLP 312
+N S+ TL V+ AL+ ESHVPYR SKLT +LQ SLG +K+LM + P
Sbjct: 305 INSSLSTLGLVIMALSNKESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISP 355
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 75/286 (26%), Positives = 128/286 (44%), Gaps = 24/286 (8%)
Query: 56 QPSSRKECYKLDYCYEQNEGNGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQG 115
Q +++ +K D ++Q + N +F +EV L+ +G N I A G GSGKT +
Sbjct: 102 QNTAQVHEFKFDKIFDQQDTNVDVF-KEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLN 160
Query: 116 SYEEPGLAALAVDEILSISEKMGKS-----ITISFYEIFQDHVYDLL---DPKQQEVQI- 166
+ G+ + I + K+ + F EI+ +++ DLL + +++ I
Sbjct: 161 PGD--GIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIG 218
Query: 167 ----LENGQGKIQLKGLSQVPVKSISE--FQKLYISMHNSRKPVQKITMDLPRRSHKGLI 220
+ + Q + VK SE + + + R + + RSH I
Sbjct: 219 LKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFI 278
Query: 221 VNVS---PVSNFLPTGKMNFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYAL- 276
+++S + G +N VDLAG + I G E +NKS+ L +V++AL
Sbjct: 279 IHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALG 338
Query: 277 --NANESHVPYRESKLTRMLQESLGCKSKILMLTCLLPRSVSTTKT 320
++ + H+P+R SKLT +LQ SL SK LM + P S +T
Sbjct: 339 QPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINET 384
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 76/308 (24%), Positives = 131/308 (42%), Gaps = 31/308 (10%)
Query: 38 IQKPNGEDSDSVTVSFGEQPSSRKECYKLDYCYEQNEGNGIIFAREVKPLISEVFNGINA 97
+Q P D S+ V E + D+ + ++ + PL+ ++ G
Sbjct: 45 VQFPPWSDGKSLIVDQNE--------FHFDHAFPATISQDEMYQALILPLVDKLLEGFQC 96
Query: 98 TIVACGAKGSGKTRVIQGSY------EEPGLAALAVDEILSI------SEKMGKSITISF 145
T +A G G+GK+ + + E G+ A+ +I + K + SF
Sbjct: 97 TALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASF 156
Query: 146 YEIFQDHVYDLLDPKQQEVQILENGQGKIQLKGLSQVPVKSISEFQKLYISMHNSRKPVQ 205
EI+ + +DLL + Q L SQ + I E + N R V+
Sbjct: 157 IEIYNEKPFDLLGSTPHMPMVAARCQRCTCLPLHSQADLHHILE-----LGTRNRR--VR 209
Query: 206 KITMDL-PRRSHKGLIVNVSPVSNFLPTGKMNFVDLAGYQDIRRKSTEGSIFVENTKVNK 264
M+ RSH + ++V ++ +MN VDLAG + +RR EG E +N
Sbjct: 210 PTNMNSNSSRSHAIVTIHVKSKTHH---SRMNIVDLAGSEGVRRTGHEGVARQEGVNINL 266
Query: 265 SIYTLFNVVYALNANESHVPYRESKLTRMLQESLGCKSKILMLTCLLPRSVSTTKTQTGS 324
+ ++ VV ++ A + +PYR+S LT +LQ SL +S + L C+ P ++T +
Sbjct: 267 GLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTL 326
Query: 325 QMHSSTKK 332
+ +S KK
Sbjct: 327 RFGTSAKK 334
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/309 (24%), Positives = 131/309 (42%), Gaps = 31/309 (10%)
Query: 38 IQKPNGEDSDSVTVSFGEQPSSRKECYKLDYCYEQNEGNGIIFAREVKPLISEVFNGINA 97
+Q P D S+ V E + D+ + ++ + PL+ ++ G
Sbjct: 45 VQFPPWSDGKSLIVDQNE--------FHFDHAFPATISQDEMYQALILPLVDKLLEGFQC 96
Query: 98 TIVACGAKGSGKTRVIQGSY------EEPGLAALAVDEILSI------SEKMGKSITISF 145
T +A G G+GK+ + + E G+ A+ +I + K + SF
Sbjct: 97 TALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASF 156
Query: 146 YEIFQDHVYDLLDPKQQEVQILENGQGKIQLKGLSQVPVKSISEFQKLYISMHNSRKPVQ 205
EI+ + +DLL + Q L SQ + I E + N R V+
Sbjct: 157 IEIYNEKPFDLLGSTPHMPMVAARCQRCTCLPLHSQADLHHILE-----LGTRNRR--VR 209
Query: 206 KITMDL-PRRSHKGLIVNVSPVSNFLPTGKMNFVDLAGYQDIRRKSTEGSIFVENTKVNK 264
M+ RSH + ++V ++ +MN VDLAG + +RR EG E +N
Sbjct: 210 PTNMNSNSSRSHAIVTIHVKSKTHH---SRMNIVDLAGSEGVRRTGHEGVARQEGVNINL 266
Query: 265 SIYTLFNVVYALNANESHVPYRESKLTRMLQESLGCKSKILMLTCLLPRSVSTTKTQTGS 324
+ ++ VV ++ A + +PYR+S LT +LQ SL +S + L C+ P ++T +
Sbjct: 267 GLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTL 326
Query: 325 QMHSSTKKA 333
+ +S K A
Sbjct: 327 RFGTSAKAA 335
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 125/285 (43%), Gaps = 21/285 (7%)
Query: 64 YKLDYCYEQNEGNGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQGSYEEPGLA 123
+ D + NE ++ P+I G N TI A G SGKT + GS + G+
Sbjct: 46 FNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVI 105
Query: 124 ALAVDEILSISEKMGKS---ITISFYEIFQDHVYDLL--DPKQQEVQILENGQGKIQLKG 178
A+ +I +K + +S+ EI+ + + DLL K + + I E+ + +
Sbjct: 106 PRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNVYVAD 165
Query: 179 LSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNV----------SPVSN 228
L++ V + SE +I+ + + M+ R S I + S
Sbjct: 166 LTEEVVYT-SEMALKWITKGEKSRHYGETKMN-QRSSRSHTIFRMILESREKGEPSNCEG 223
Query: 229 FLPTGKMNFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANE--SHVPYR 286
+ +N VDLAG + + G E +N+S++ L V+ L+ + + YR
Sbjct: 224 SVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYR 283
Query: 287 ESKLTRMLQESLGCKSKILMLTCLLPRSVSTTKTQTGSQMHSSTK 331
+SKLTR+LQ SLG +K ++ + P VS +T T Q S+ K
Sbjct: 284 DSKLTRILQNSLGGNAKTRIICTITP--VSFDETLTALQFASTAK 326
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 127/286 (44%), Gaps = 24/286 (8%)
Query: 56 QPSSRKECYKLDYCYEQNEGNGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQG 115
Q +++ +K D ++Q + N +F +EV L+ +G N I A G GSGKT +
Sbjct: 57 QNTAQVHEFKFDKIFDQQDTNVDVF-KEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLN 115
Query: 116 SYEEPGLAALAVDEILSISEKMGKS-----ITISFYEIFQDHVYDLL---DPKQQEVQI- 166
+ G+ + I + K+ + F EI+ +++ DLL + +++ I
Sbjct: 116 PGD--GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIG 173
Query: 167 ----LENGQGKIQLKGLSQVPVKSISE--FQKLYISMHNSRKPVQKITMDLPRRSHKGLI 220
+ + Q + K SE + + + R + + RSH I
Sbjct: 174 LKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFI 233
Query: 221 VNVS---PVSNFLPTGKMNFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYAL- 276
+++S + G +N VDLAG + I G E +NKS+ L +V++AL
Sbjct: 234 IHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALG 293
Query: 277 --NANESHVPYRESKLTRMLQESLGCKSKILMLTCLLPRSVSTTKT 320
++ + H+P+R SKLT +LQ SL SK LM + P S +T
Sbjct: 294 QPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINET 339
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 127/286 (44%), Gaps = 24/286 (8%)
Query: 56 QPSSRKECYKLDYCYEQNEGNGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQG 115
Q +++ +K D ++Q + N +F +EV L+ +G N I A G GSGKT +
Sbjct: 45 QNTAQVHEFKFDKIFDQQDTNVDVF-KEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLN 103
Query: 116 SYEEPGLAALAVDEILSISEKMGKS-----ITISFYEIFQDHVYDLL---DPKQQEVQI- 166
+ G+ + I + K+ + F EI+ +++ DLL + +++ I
Sbjct: 104 PGD--GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIG 161
Query: 167 ----LENGQGKIQLKGLSQVPVKSISE--FQKLYISMHNSRKPVQKITMDLPRRSHKGLI 220
+ + Q + K SE + + + R + + RSH I
Sbjct: 162 LKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFI 221
Query: 221 VNVS---PVSNFLPTGKMNFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYAL- 276
+++S + G +N VDLAG + I G E +NKS+ L +V++AL
Sbjct: 222 IHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALG 281
Query: 277 --NANESHVPYRESKLTRMLQESLGCKSKILMLTCLLPRSVSTTKT 320
++ + H+P+R SKLT +LQ SL SK LM + P S +T
Sbjct: 282 QPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINET 327
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 126/286 (44%), Gaps = 24/286 (8%)
Query: 56 QPSSRKECYKLDYCYEQNEGNGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQG 115
Q +++ +K D ++Q + N +F +EV L+ +G N I A G GSGKT +
Sbjct: 46 QNTAQVHEFKFDKIFDQQDTNVDVF-KEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLN 104
Query: 116 SYEEPGLAALAVDEILSISEKMGKS-----ITISFYEIFQDHVYDLL---DPKQQEVQI- 166
+ G+ + I + K+ + F EI+ +++ DLL + +++ I
Sbjct: 105 PGD--GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIG 162
Query: 167 ----LENGQGKIQLKGLSQVPVKSISE--FQKLYISMHNSRKPVQKITMDLPRRSHKGLI 220
+ + Q + K SE + + + R + + RSH I
Sbjct: 163 LKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFI 222
Query: 221 VNVS---PVSNFLPTGKMNFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYAL- 276
+++S + G +N VDLAG I G E +NKS+ L +V++AL
Sbjct: 223 IHLSGSNAKTGAHSYGTLNLVDLAGSARINVSQVVGDRLRETQNINKSLSCLGDVIHALG 282
Query: 277 --NANESHVPYRESKLTRMLQESLGCKSKILMLTCLLPRSVSTTKT 320
++ + H+P+R SKLT +LQ SL SK LM + P S +T
Sbjct: 283 QPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINET 328
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 126/286 (44%), Gaps = 24/286 (8%)
Query: 56 QPSSRKECYKLDYCYEQNEGNGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQG 115
Q +++ +K D ++Q + N +F +EV L+ +G N I A G GSGKT +
Sbjct: 46 QNTAQVHEFKFDKIFDQQDTNVDVF-KEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLN 104
Query: 116 SYEEPGLAALAVDEILSISEKMGKS-----ITISFYEIFQDHVYDLL---DPKQQEVQI- 166
+ G+ + I + K+ + F EI+ +++ DLL + +++ I
Sbjct: 105 PGD--GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIG 162
Query: 167 ----LENGQGKIQLKGLSQVPVKSISE--FQKLYISMHNSRKPVQKITMDLPRRSHKGLI 220
+ + Q + K SE + + + R + + RSH I
Sbjct: 163 LKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFI 222
Query: 221 VNVS---PVSNFLPTGKMNFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYAL- 276
+++S + G +N VDLAG + I G E + KS+ L +V++AL
Sbjct: 223 IHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNIKKSLSCLGDVIHALG 282
Query: 277 --NANESHVPYRESKLTRMLQESLGCKSKILMLTCLLPRSVSTTKT 320
++ + H+P+R SKLT +LQ SL SK LM + P S +T
Sbjct: 283 QPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINET 328
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 126/286 (44%), Gaps = 24/286 (8%)
Query: 56 QPSSRKECYKLDYCYEQNEGNGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQG 115
Q +++ +K D ++Q + N +F +EV L+ +G N I A G GSGKT +
Sbjct: 46 QNTAQVHEFKFDKIFDQQDTNVDVF-KEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLN 104
Query: 116 SYEEPGLAALAVDEILSISEKMGK-----SITISFYEIFQDHVYDLL---DPKQQEVQI- 166
+ G+ + I + K+ + F EI+ +++ DLL + +++ I
Sbjct: 105 PGD--GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIG 162
Query: 167 ----LENGQGKIQLKGLSQVPVKSISE--FQKLYISMHNSRKPVQKITMDLPRRSHKGLI 220
+ + Q + K SE + + + R + + SH I
Sbjct: 163 LKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFI 222
Query: 221 VNVS---PVSNFLPTGKMNFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYAL- 276
+++S + G +N VDLAG + I G E +NKS+ L +V++AL
Sbjct: 223 IHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALG 282
Query: 277 --NANESHVPYRESKLTRMLQESLGCKSKILMLTCLLPRSVSTTKT 320
++ + H+P+R SKLT +LQ SL SK LM + P S +T
Sbjct: 283 QPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINET 328
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 84/193 (43%), Gaps = 10/193 (5%)
Query: 64 YKLDYCYEQNEGNGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQGSYEEPGLA 123
Y D N ++ K ++ +V G N TI A G SGKT ++G +P L
Sbjct: 46 YVFDRVLPPNTTQEQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPQLM 105
Query: 124 AL-------AVDEILSISEKMGKSITISFYEIFQDHVYDLLDPKQQEVQILENGQGKIQL 176
+ D I S+ E + I +S++EI+ D + DLLD + + + E+ +
Sbjct: 106 GIIPRIAHDIFDHIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLAVHEDKNRVPYV 165
Query: 177 KGLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNV---SPVSNFLPTG 233
KG ++ V S E + +R + RSH ++N+ + + +G
Sbjct: 166 KGCTERFVSSPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQENVETEKKLSG 225
Query: 234 KMNFVDLAGYQDI 246
K+ VDLAG + +
Sbjct: 226 KLYLVDLAGSEKV 238
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 263 NKSIYTLFNVVYAL-NANESHVPYRESKLTRMLQESLGCKSKILMLTCLLP 312
NKS+ L NV+ AL ++HVPYR+SK+TR+LQ+SLG + ++ C P
Sbjct: 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSP 51
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 262 VNKSIYTLFNVVYAL-NANESHVPYRESKLTRMLQESLGCKSKILMLTCLLP 312
+NKS+ L NV+ AL ++HVPYR+SK+TR+LQ+SL + ++ C P
Sbjct: 4 INKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSP 55
>pdb|2EDU|A Chain A, Solution Structure Of Rsgi Ruh-070, A C-Terminal Domain Of
Kinesin-Like Protein Kif22 From Human Cdna
Length = 98
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 546 QEYLKLLNTGGKEDLKRLKGIGEKRASYILELREESPEPFKNLDDLKDI-GLSAKQIKGM 604
Q+ L LLN G DL+ L+ IG K+A I+ RE PF ++DL+ + G++ KQ++
Sbjct: 28 QKILDLLNEGSARDLRSLQRIGPKKAQLIVGWRELH-GPFSQVEDLERVEGITGKQMESF 86
Query: 605 MKKEM 609
+K +
Sbjct: 87 LKANI 91
>pdb|1C41|A Chain A, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C41|B Chain B, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C41|C Chain C, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C41|D Chain D, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C41|E Chain E, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C41|F Chain F, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C41|G Chain G, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C41|H Chain H, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C41|I Chain I, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C41|J Chain J, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
Length = 200
Score = 32.3 bits (72), Expect = 0.85, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 9/70 (12%)
Query: 71 EQNEGN----GIIFAREVKPLISEVFNGINATIVACGAKGSG-KTRVIQGSYEEPGLAAL 125
+Q++G+ GI+ AR + +I + G A ++ACG K S + + GS+E P +
Sbjct: 9 QQHDGSALRIGIVHARWNETIIEPLLAGTKAKLLACGVKESNIVVQSVPGSWELP----I 64
Query: 126 AVDEILSISE 135
AV + S S+
Sbjct: 65 AVQRLYSASQ 74
>pdb|1KKT|A Chain A, Structure Of P. Citrinum Alpha 1,2-Mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KKT|B Chain B, Structure Of P. Citrinum Alpha 1,2-Mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KRE|A Chain A, Structure Of P. Citrinum Alpha 1,2-Mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KRE|B Chain B, Structure Of P. Citrinum Alpha 1,2-Mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KRF|A Chain A, Structure Of P. Citrinum Alpha 1,2-mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KRF|B Chain B, Structure Of P. Citrinum Alpha 1,2-mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
Length = 511
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 13/70 (18%)
Query: 529 PWETFNMRSSG----------MKNSLVQEYLKLLNTGGKEDLKRLKGIGEKRASYILELR 578
P+ N+ S G + +LV E+ +L + G E+ +L +K SY+L+ +
Sbjct: 177 PYNNINITSHGNDGATTNGLAVTGTLVLEWTRLSDLTGDEEYAKLS---QKAESYLLKPQ 233
Query: 579 EESPEPFKNL 588
S EPF L
Sbjct: 234 PSSSEPFPGL 243
>pdb|2RI8|A Chain A, Penicillium Citrinum Alpha-1,2-Mannosidase Complex With
Glycerol
pdb|2RI8|B Chain B, Penicillium Citrinum Alpha-1,2-Mannosidase Complex With
Glycerol
pdb|2RI9|A Chain A, Penicillium Citrinum Alpha-1,2-Mannosidase In Complex With
A Substrate Analog
pdb|2RI9|B Chain B, Penicillium Citrinum Alpha-1,2-Mannosidase In Complex With
A Substrate Analog
Length = 475
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 13/70 (18%)
Query: 529 PWETFNMRSSG----------MKNSLVQEYLKLLNTGGKEDLKRLKGIGEKRASYILELR 578
P+ N+ S G + +LV E+ +L + G E+ +L +K SY+L+ +
Sbjct: 142 PYNNINITSHGNDGATTNGLAVTGTLVLEWTRLSDLTGDEEYAKLS---QKAESYLLKPQ 198
Query: 579 EESPEPFKNL 588
S EPF L
Sbjct: 199 PSSSEPFPGL 208
>pdb|3S6U|A Chain A, Caclcium-Bound Ac-Asp-7
pdb|3S6U|B Chain B, Caclcium-Bound Ac-Asp-7
pdb|3S6V|A Chain A, Manganese-Bound Ac-Asp-7
pdb|3S6V|B Chain B, Manganese-Bound Ac-Asp-7
Length = 206
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%)
Query: 73 NEGNGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQGSYEEPGLAALAVDEI 130
N+G+G + R + I NG+ I A+G G R + G + GL A EI
Sbjct: 7 NQGSGCMVDRPFREAIDTFHNGLRQRIAKGEAEGYGPAREMYGLVYDCGLEEEARKEI 64
>pdb|3S6S|A Chain A, Ancylostoma-Secreted Protein Ac-Asp-7
pdb|3S6S|B Chain B, Ancylostoma-Secreted Protein Ac-Asp-7
Length = 206
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%)
Query: 73 NEGNGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQGSYEEPGLAALAVDEI 130
N+G+G + R + I NG+ I A+G G R + G + GL A EI
Sbjct: 7 NQGSGCMVDRPFREAIDTFHNGLRQRIAKGEAEGYGPAREMYGLVYDCGLEEEARKEI 64
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.131 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,563,921
Number of Sequences: 62578
Number of extensions: 671510
Number of successful extensions: 1646
Number of sequences better than 100.0: 74
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1453
Number of HSP's gapped (non-prelim): 81
length of query: 614
length of database: 14,973,337
effective HSP length: 105
effective length of query: 509
effective length of database: 8,402,647
effective search space: 4276947323
effective search space used: 4276947323
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)