Query 035971
Match_columns 614
No_of_seqs 387 out of 2967
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 13:35:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035971.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035971hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cob_A Kinesin heavy chain-lik 100.0 3E-81 1E-85 668.3 30.0 321 10-338 1-337 (369)
2 2vvg_A Kinesin-2; motor protei 100.0 8.3E-81 2.8E-85 661.1 27.6 319 13-337 3-344 (350)
3 3bfn_A Kinesin-like protein KI 100.0 4E-81 1.4E-85 669.8 24.1 323 10-339 17-358 (388)
4 2y65_A Kinesin, kinesin heavy 100.0 1.2E-80 4.3E-85 663.1 24.1 319 11-338 8-343 (365)
5 1t5c_A CENP-E protein, centrom 100.0 6.1E-80 2.1E-84 654.5 28.0 316 13-339 3-339 (349)
6 1goj_A Kinesin, kinesin heavy 100.0 1.5E-79 5.2E-84 652.9 28.9 316 13-338 5-340 (355)
7 3b6u_A Kinesin-like protein KI 100.0 1E-79 3.5E-84 656.7 26.4 324 9-337 16-362 (372)
8 2owm_A Nckin3-434, related to 100.0 2.1E-79 7.1E-84 668.1 28.4 324 9-336 33-421 (443)
9 1bg2_A Kinesin; motor protein, 100.0 6.5E-80 2.2E-84 648.9 23.0 303 12-328 5-325 (325)
10 3lre_A Kinesin-like protein KI 100.0 2.6E-79 9E-84 651.4 27.6 319 8-328 4-355 (355)
11 2h58_A Kinesin-like protein KI 100.0 5.7E-79 1.9E-83 643.0 29.8 309 12-329 2-329 (330)
12 3t0q_A AGR253WP; kinesin, alph 100.0 5.6E-79 1.9E-83 647.8 29.3 317 10-331 1-347 (349)
13 1x88_A Kinesin-like protein KI 100.0 1.1E-79 3.8E-84 655.2 22.7 320 11-335 5-357 (359)
14 2zfi_A Kinesin-like protein KI 100.0 2.6E-79 9E-84 653.8 25.1 316 13-335 3-361 (366)
15 2wbe_C Bipolar kinesin KRP-130 100.0 2.7E-79 9.3E-84 654.8 23.3 321 10-337 19-370 (373)
16 1f9v_A Kinesin-like protein KA 100.0 1.5E-78 5.1E-83 643.8 27.8 316 12-332 1-345 (347)
17 4a14_A Kinesin, kinesin-like p 100.0 6.4E-78 2.2E-82 638.8 27.8 302 12-324 9-343 (344)
18 2rep_A Kinesin-like protein KI 100.0 4.6E-78 1.6E-82 645.1 25.4 319 5-324 13-373 (376)
19 2heh_A KIF2C protein; kinesin, 100.0 1.7E-77 5.7E-82 641.6 29.4 309 13-330 50-384 (387)
20 1ry6_A Internal kinesin; kines 100.0 1.6E-77 5.4E-82 638.1 26.6 318 15-339 1-342 (360)
21 3nwn_A Kinesin-like protein KI 100.0 2E-77 6.9E-82 637.1 27.1 310 9-328 19-359 (359)
22 3gbj_A KIF13B protein; kinesin 100.0 1E-77 3.6E-82 638.9 24.9 305 14-324 1-347 (354)
23 2nr8_A Kinesin-like protein KI 100.0 2.1E-77 7.3E-82 636.7 27.2 311 8-328 17-358 (358)
24 1v8k_A Kinesin-like protein KI 100.0 5.4E-77 1.8E-81 641.4 30.6 311 13-332 70-406 (410)
25 4etp_A Kinesin-like protein KA 100.0 5.3E-78 1.8E-82 651.1 22.8 325 3-332 48-401 (403)
26 3u06_A Protein claret segregat 100.0 7.1E-78 2.4E-82 650.6 21.3 320 3-332 48-386 (412)
27 3dc4_A Kinesin-like protein NO 100.0 4.2E-75 1.4E-79 616.0 27.2 298 12-329 20-336 (344)
28 4h1g_A Maltose binding protein 100.0 2.6E-71 8.8E-76 640.0 29.0 316 10-329 370-712 (715)
29 2o0a_A S.cerevisiae chromosome 99.9 1.4E-26 5E-31 234.4 11.2 265 3-335 13-296 (298)
30 2kin_B Kinesin; motor protein, 99.9 1.5E-23 5.1E-28 183.4 6.0 78 260-338 2-86 (100)
31 3kin_B Kinesin heavy chain; mo 99.8 1.4E-21 4.7E-26 176.2 7.3 76 263-339 1-83 (117)
32 1s5l_U Photosystem II 12 kDa e 99.0 4.2E-10 1.4E-14 102.2 6.0 51 549-604 54-105 (134)
33 3arc_U Photosystem II 12 kDa e 98.9 7.8E-10 2.7E-14 96.0 4.9 52 550-606 18-70 (97)
34 2i5h_A Hypothetical protein AF 98.9 8E-10 2.7E-14 106.7 5.4 46 546-593 115-165 (205)
35 2edu_A Kinesin-like protein KI 98.9 1.8E-09 6.2E-14 94.0 7.1 69 540-609 22-91 (98)
36 2duy_A Competence protein come 98.7 1.3E-08 4.5E-13 84.0 5.0 52 550-606 19-71 (75)
37 3bzc_A TEX; helix-turn-helix, 98.3 5.1E-07 1.8E-11 104.3 6.2 59 546-605 496-555 (785)
38 3psf_A Transcription elongatio 97.7 1.5E-05 5.3E-10 94.4 4.7 54 551-604 705-764 (1030)
39 3psi_A Transcription elongatio 97.6 2.6E-05 8.9E-10 93.8 4.1 53 552-604 703-761 (1219)
40 2bcq_A DNA polymerase lambda; 96.9 0.00056 1.9E-08 71.9 4.7 52 554-607 53-115 (335)
41 2fmp_A DNA polymerase beta; nu 96.1 0.0027 9.3E-08 66.7 3.7 53 553-607 52-117 (335)
42 2ihm_A POL MU, DNA polymerase 96.1 0.0038 1.3E-07 66.2 4.5 53 553-607 56-121 (360)
43 3ci0_K Pseudopilin GSPK; gener 95.3 0.0039 1.3E-07 64.4 0.9 52 550-603 188-248 (298)
44 1z00_A DNA excision repair pro 95.3 0.02 6.8E-07 48.1 5.2 57 548-608 9-71 (89)
45 1vq8_Y 50S ribosomal protein L 95.3 0.0031 1.1E-07 63.2 0.0 49 553-607 10-67 (241)
46 1kft_A UVRC, excinuclease ABC 95.0 0.0067 2.3E-07 49.8 1.2 53 551-607 17-75 (78)
47 1jms_A Terminal deoxynucleotid 95.0 0.016 5.6E-07 61.8 4.5 53 553-607 75-140 (381)
48 2a1j_B DNA excision repair pro 94.3 0.05 1.7E-06 45.9 5.2 67 542-608 16-84 (91)
49 1ixr_A Holliday junction DNA h 94.1 0.017 6E-07 55.8 2.1 24 552-575 101-124 (191)
50 1x2i_A HEF helicase/nuclease; 93.4 0.093 3.2E-06 42.0 5.0 25 554-578 42-66 (75)
51 2hnh_A DNA polymerase III alph 93.4 0.091 3.1E-06 62.0 6.7 46 559-606 834-884 (910)
52 2ztd_A Holliday junction ATP-d 93.3 0.036 1.2E-06 54.5 2.8 47 560-607 90-142 (212)
53 2hpi_A DNA polymerase III alph 93.3 0.08 2.7E-06 64.0 6.2 47 560-607 891-941 (1220)
54 4etp_B Spindle POLE BODY-assoc 93.2 0.1 3.5E-06 53.8 6.0 254 6-324 51-321 (333)
55 3ec2_A DNA replication protein 93.1 0.016 5.6E-07 54.0 -0.0 50 63-113 6-55 (180)
56 1kft_A UVRC, excinuclease ABC 93.1 0.089 3E-06 43.0 4.4 29 549-577 47-75 (78)
57 2w9m_A Polymerase X; SAXS, DNA 92.8 0.093 3.2E-06 58.9 5.6 47 554-606 93-149 (578)
58 3f2b_A DNA-directed DNA polyme 92.8 0.1 3.5E-06 62.1 6.0 46 560-607 969-1015(1041)
59 1z00_A DNA excision repair pro 92.5 0.077 2.6E-06 44.5 3.3 40 550-592 43-82 (89)
60 1z00_B DNA repair endonuclease 92.4 0.066 2.2E-06 44.9 2.7 27 551-577 11-37 (84)
61 1cuk_A RUVA protein; DNA repai 92.3 0.071 2.4E-06 52.0 3.3 31 551-581 101-132 (203)
62 1x2i_A HEF helicase/nuclease; 92.0 0.18 6.1E-06 40.3 4.8 50 558-607 14-65 (75)
63 2a1j_B DNA excision repair pro 91.4 0.16 5.5E-06 42.7 4.1 36 549-587 55-90 (91)
64 2ztd_A Holliday junction ATP-d 91.4 0.34 1.2E-05 47.5 7.0 57 551-608 116-188 (212)
65 2a1j_A DNA repair endonuclease 91.1 0.15 5.1E-06 40.2 3.3 20 557-576 3-22 (63)
66 2w58_A DNAI, primosome compone 90.8 0.053 1.8E-06 51.2 0.6 50 63-113 21-71 (202)
67 1ixr_A Holliday junction DNA h 90.4 0.19 6.5E-06 48.5 4.0 47 559-607 73-126 (191)
68 1cuk_A RUVA protein; DNA repai 90.0 0.2 6.8E-06 48.8 3.8 47 559-607 74-127 (203)
69 3c65_A Uvrabc system protein C 89.5 0.067 2.3E-06 53.0 0.0 50 556-606 171-222 (226)
70 2qgz_A Helicase loader, putati 88.8 0.1 3.5E-06 53.7 0.8 50 64-114 121-170 (308)
71 2fmp_A DNA polymerase beta; nu 86.8 0.35 1.2E-05 50.6 3.4 35 553-593 93-127 (335)
72 2bgw_A XPF endonuclease; hydro 85.8 0.43 1.5E-05 46.5 3.3 49 559-607 163-213 (219)
73 1jbk_A CLPB protein; beta barr 85.1 0.34 1.2E-05 43.9 2.0 31 83-113 30-60 (195)
74 1b22_A DNA repair protein RAD5 84.5 0.44 1.5E-05 42.2 2.4 43 550-593 50-94 (114)
75 4gkp_A Spindle POLE BODY-assoc 83.5 40 0.0014 34.0 19.7 258 6-332 5-273 (275)
76 2duy_A Competence protein come 83.2 0.85 2.9E-05 36.7 3.4 39 539-577 34-72 (75)
77 2p65_A Hypothetical protein PF 82.6 0.39 1.3E-05 43.6 1.3 31 83-113 30-60 (187)
78 1jms_A Terminal deoxynucleotid 82.0 1.3 4.6E-05 47.0 5.3 33 557-595 120-153 (381)
79 2ihm_A POL MU, DNA polymerase 81.6 1.4 4.9E-05 46.3 5.4 32 556-593 100-131 (360)
80 4b4t_M 26S protease regulatory 81.3 5.1 0.00017 43.2 9.7 76 63-138 177-274 (434)
81 3b0x_A DNA polymerase beta fam 81.3 1.3 4.3E-05 49.6 5.1 45 557-606 92-146 (575)
82 3t15_A Ribulose bisphosphate c 81.0 0.62 2.1E-05 47.2 2.2 37 77-113 13-53 (293)
83 4b4t_K 26S protease regulatory 80.5 4 0.00014 44.0 8.5 119 16-138 116-265 (428)
84 2bjv_A PSP operon transcriptio 79.7 0.55 1.9E-05 46.3 1.3 45 63-113 2-46 (265)
85 2bcq_A DNA polymerase lambda; 79.1 2 6.8E-05 44.8 5.4 32 559-596 97-129 (335)
86 2r62_A Cell division protease 78.2 0.71 2.4E-05 45.4 1.6 50 63-113 7-61 (268)
87 1wcn_A Transcription elongatio 77.9 2.7 9.1E-05 33.7 4.6 51 557-613 6-66 (70)
88 3h4m_A Proteasome-activating n 77.7 0.72 2.5E-05 45.7 1.5 51 63-113 13-68 (285)
89 3te6_A Regulatory protein SIR3 77.4 0.69 2.4E-05 48.0 1.3 23 91-113 40-62 (318)
90 3sgi_A DNA ligase; HET: DNA AM 76.7 0.51 1.7E-05 53.2 0.0 50 549-599 552-601 (615)
91 1g8p_A Magnesium-chelatase 38 76.6 0.66 2.3E-05 47.2 0.9 44 62-113 19-62 (350)
92 1l8q_A Chromosomal replication 76.6 0.72 2.5E-05 46.9 1.1 48 63-113 7-54 (324)
93 1pu6_A 3-methyladenine DNA gly 76.2 1.4 4.8E-05 43.1 3.0 51 555-607 118-176 (218)
94 1ixz_A ATP-dependent metallopr 76.0 0.67 2.3E-05 45.3 0.7 50 63-113 12-66 (254)
95 3bos_A Putative DNA replicatio 75.8 1.5 5E-05 41.6 3.0 20 94-113 50-69 (242)
96 2bgw_A XPF endonuclease; hydro 75.1 1.7 5.7E-05 42.2 3.3 28 552-579 188-215 (219)
97 3cf0_A Transitional endoplasmi 74.6 0.91 3.1E-05 46.0 1.3 51 63-113 11-66 (301)
98 1kg2_A A/G-specific adenine gl 74.4 1.6 5.5E-05 42.8 2.9 27 555-581 106-132 (225)
99 1d2n_A N-ethylmaleimide-sensit 74.3 1.2 4.2E-05 43.9 2.1 21 93-113 61-81 (272)
100 4e9f_A Methyl-CPG-binding doma 74.0 1.3 4.4E-05 41.4 2.0 23 555-577 101-123 (161)
101 3fhg_A Mjogg, N-glycosylase/DN 74.0 1.7 5.8E-05 42.1 3.0 23 555-577 114-136 (207)
102 1kea_A Possible G-T mismatches 73.9 1.7 5.9E-05 42.4 3.0 24 555-578 112-135 (221)
103 4b4t_I 26S protease regulatory 73.4 16 0.00054 39.4 10.6 75 64-138 179-275 (437)
104 2kjq_A DNAA-related protein; s 72.8 1.1 3.8E-05 40.7 1.3 17 97-113 37-53 (149)
105 4glx_A DNA ligase; inhibitor, 72.6 1.8 6.2E-05 48.5 3.2 48 549-597 535-582 (586)
106 2owo_A DNA ligase; protein-DNA 72.4 2.6 9E-05 47.9 4.4 47 549-596 535-581 (671)
107 2chg_A Replication factor C sm 72.4 1.2 4.2E-05 41.2 1.4 21 93-113 35-55 (226)
108 1qde_A EIF4A, translation init 72.3 1.4 4.9E-05 41.7 2.0 24 87-112 44-67 (224)
109 4gfj_A Topoisomerase V; helix- 72.3 3.4 0.00012 44.1 4.9 45 557-605 467-516 (685)
110 2abk_A Endonuclease III; DNA-r 71.9 1.9 6.6E-05 41.7 2.8 52 555-608 106-166 (211)
111 1orn_A Endonuclease III; DNA r 71.6 2.1 7.3E-05 42.0 3.1 52 555-608 110-171 (226)
112 3c1y_A DNA integrity scanning 71.6 2.4 8.1E-05 44.9 3.5 28 549-576 338-365 (377)
113 2gxq_A Heat resistant RNA depe 71.4 1.6 5.5E-05 40.7 2.1 23 88-112 32-54 (207)
114 3b9p_A CG5977-PA, isoform A; A 70.0 1.2 4.1E-05 44.5 0.8 51 63-113 17-71 (297)
115 3fhf_A Mjogg, N-glycosylase/DN 68.9 2 6.7E-05 42.1 2.1 22 556-577 122-144 (214)
116 3d8b_A Fidgetin-like protein 1 68.4 1.1 3.9E-05 46.5 0.3 50 64-113 81-134 (357)
117 1p9r_A General secretion pathw 68.3 2 6.7E-05 46.2 2.2 28 86-113 157-184 (418)
118 2nrt_A Uvrabc system protein C 68.3 3 0.0001 41.0 3.3 44 557-605 167-216 (220)
119 3bqs_A Uncharacterized protein 67.8 2.1 7.2E-05 36.4 1.8 34 556-595 2-35 (93)
120 2z4s_A Chromosomal replication 67.7 1.5 5E-05 47.3 1.0 49 61-113 99-147 (440)
121 4b4t_L 26S protease subunit RP 67.5 4.2 0.00014 43.9 4.6 50 63-112 177-231 (437)
122 2h56_A DNA-3-methyladenine gly 67.3 2.7 9.3E-05 41.4 2.8 23 556-578 136-158 (233)
123 1iy2_A ATP-dependent metallopr 67.2 1.3 4.4E-05 44.1 0.4 51 62-113 35-90 (278)
124 1vec_A ATP-dependent RNA helic 66.5 3.2 0.00011 38.6 3.0 25 87-113 33-57 (206)
125 2v1u_A Cell division control p 66.5 0.93 3.2E-05 46.4 -0.8 20 94-113 42-61 (387)
126 1dgs_A DNA ligase; AMP complex 66.1 3.3 0.00011 47.1 3.4 48 549-597 530-577 (667)
127 2edu_A Kinesin-like protein KI 65.4 3.8 0.00013 34.7 3.0 24 555-578 67-90 (98)
128 3syl_A Protein CBBX; photosynt 65.3 1.8 6.2E-05 43.2 1.0 20 94-113 65-84 (309)
129 3jvv_A Twitching mobility prot 65.2 2.2 7.6E-05 44.7 1.8 28 86-113 113-140 (356)
130 1xwi_A SKD1 protein; VPS4B, AA 65.2 1.6 5.5E-05 44.8 0.6 50 64-113 9-62 (322)
131 3uk6_A RUVB-like 2; hexameric 65.1 3.1 0.00011 42.6 2.8 47 62-113 39-87 (368)
132 4b21_A Probable DNA-3-methylad 64.8 3.5 0.00012 40.7 3.0 23 556-578 148-170 (232)
133 3vdp_A Recombination protein R 64.7 3.4 0.00012 40.3 2.8 22 558-579 26-47 (212)
134 2c9o_A RUVB-like 1; hexameric 64.6 3.3 0.00011 44.5 3.1 47 62-113 32-80 (456)
135 3dkp_A Probable ATP-dependent 64.5 3.4 0.00012 39.8 2.8 24 87-112 59-82 (245)
136 1t6n_A Probable ATP-dependent 64.2 2.7 9.4E-05 39.7 2.1 25 87-113 44-68 (220)
137 1fnn_A CDC6P, cell division co 63.3 2.9 0.0001 42.8 2.2 30 84-113 29-61 (389)
138 3s6i_A DNA-3-methyladenine gly 62.5 4 0.00014 40.1 3.0 22 557-578 138-159 (228)
139 3n5n_X A/G-specific adenine DN 62.4 3.7 0.00013 41.9 2.7 24 555-578 125-149 (287)
140 3bor_A Human initiation factor 62.4 2.3 8E-05 41.0 1.2 24 87-112 60-83 (237)
141 2kp7_A Crossover junction endo 62.2 3.9 0.00013 34.2 2.4 25 552-576 52-76 (87)
142 3fsp_A A/G-specific adenine gl 62.1 3.9 0.00013 42.9 2.9 25 555-579 115-139 (369)
143 2yg9_A DNA-3-methyladenine gly 62.1 3.9 0.00013 40.1 2.8 22 557-578 145-166 (225)
144 3ly5_A ATP-dependent RNA helic 62.0 2.9 9.9E-05 41.2 1.8 24 87-112 84-107 (262)
145 1lv7_A FTSH; alpha/beta domain 61.9 1.5 5E-05 42.9 -0.4 50 63-113 8-62 (257)
146 1mpg_A ALKA, 3-methyladenine D 61.9 4.1 0.00014 41.2 3.0 46 557-605 206-257 (282)
147 2pl3_A Probable ATP-dependent 61.9 4 0.00014 39.0 2.8 24 87-112 55-78 (236)
148 3vfd_A Spastin; ATPase, microt 61.5 1.8 6.3E-05 45.3 0.3 51 63-113 111-165 (389)
149 3iuy_A Probable ATP-dependent 61.0 4.2 0.00015 38.6 2.8 24 87-112 50-73 (228)
150 4b4t_J 26S protease regulatory 60.6 3.9 0.00013 43.7 2.7 76 64-139 145-242 (405)
151 3i0w_A 8-oxoguanine-DNA-glycos 60.4 4.5 0.00015 41.2 3.0 23 556-578 209-231 (290)
152 1vdd_A Recombination protein R 60.3 4.5 0.00015 39.8 2.8 21 558-578 12-32 (228)
153 1u0j_A DNA replication protein 60.3 4.2 0.00014 41.0 2.7 30 84-113 89-121 (267)
154 3fe2_A Probable ATP-dependent 60.3 3.1 0.00011 40.2 1.7 24 87-112 59-82 (242)
155 3eie_A Vacuolar protein sortin 60.2 2.3 7.9E-05 43.3 0.7 50 64-113 15-68 (322)
156 3llm_A ATP-dependent RNA helic 60.1 3 0.0001 40.3 1.5 26 86-113 68-93 (235)
157 3b6e_A Interferon-induced heli 60.0 1.8 6.3E-05 40.3 -0.0 23 89-113 43-65 (216)
158 3co5_A Putative two-component 59.4 4.6 0.00016 35.9 2.5 18 96-113 27-44 (143)
159 1njg_A DNA polymerase III subu 58.9 3.5 0.00012 38.4 1.7 17 97-113 46-62 (250)
160 2x8a_A Nuclear valosin-contain 58.8 1.9 6.5E-05 43.2 -0.2 50 64-113 7-61 (274)
161 1sxj_D Activator 1 41 kDa subu 58.7 2.6 9E-05 42.7 0.9 28 86-113 48-75 (353)
162 2eyu_A Twitching motility prot 58.7 3.3 0.00011 41.2 1.6 20 94-113 23-42 (261)
163 1wrb_A DJVLGB; RNA helicase, D 58.7 4.8 0.00016 39.0 2.7 24 87-112 53-76 (253)
164 2qz4_A Paraplegin; AAA+, SPG7, 58.6 6.7 0.00023 37.8 3.8 19 95-113 38-56 (262)
165 1gvn_B Zeta; postsegregational 58.4 7.1 0.00024 39.3 4.1 30 83-112 15-49 (287)
166 2jhn_A ALKA, 3-methyladenine D 58.3 4.9 0.00017 41.0 2.8 22 556-577 208-229 (295)
167 3mab_A Uncharacterized protein 58.1 5 0.00017 34.0 2.4 33 557-595 3-35 (93)
168 2qp9_X Vacuolar protein sortin 58.0 2.7 9.1E-05 43.7 0.8 51 63-113 47-101 (355)
169 3c65_A Uvrabc system protein C 57.0 2.2 7.7E-05 42.0 0.0 26 551-577 198-223 (226)
170 2qby_B CDC6 homolog 3, cell di 56.7 3.5 0.00012 42.3 1.4 29 85-113 33-62 (384)
171 1wcn_A Transcription elongatio 56.2 7.9 0.00027 30.9 3.1 31 550-580 32-62 (70)
172 1sxj_C Activator 1 40 kDa subu 56.2 3.7 0.00012 42.0 1.5 24 90-113 40-63 (340)
173 3n0u_A Probable N-glycosylase/ 56.1 4.5 0.00016 39.6 2.0 23 555-577 126-149 (219)
174 1vq8_Y 50S ribosomal protein L 55.8 2.4 8.2E-05 42.2 0.0 29 549-577 39-67 (241)
175 3fmo_B ATP-dependent RNA helic 55.7 4.9 0.00017 40.6 2.3 26 87-112 122-147 (300)
176 3n70_A Transport activator; si 55.6 3.3 0.00011 36.9 0.8 19 94-112 22-40 (145)
177 2oxc_A Probable ATP-dependent 55.6 5.9 0.0002 37.8 2.7 24 87-112 54-77 (230)
178 3ber_A Probable ATP-dependent 55.5 5.9 0.0002 38.6 2.8 24 87-112 73-96 (249)
179 3hu3_A Transitional endoplasmi 55.5 3.9 0.00013 44.7 1.6 20 94-113 236-255 (489)
180 1tue_A Replication protein E1; 55.4 3.6 0.00012 40.2 1.1 26 88-113 48-75 (212)
181 3eiq_A Eukaryotic initiation f 55.4 5.8 0.0002 40.8 2.9 25 86-112 69-93 (414)
182 2xhi_A N-glycosylase/DNA lyase 55.2 6.1 0.00021 41.5 3.0 23 556-578 251-273 (360)
183 3fmp_B ATP-dependent RNA helic 54.5 5.8 0.0002 42.3 2.8 26 87-112 122-147 (479)
184 1iqp_A RFCS; clamp loader, ext 54.2 5.2 0.00018 39.8 2.2 21 93-113 43-63 (327)
185 1u9l_A Transcription elongatio 53.9 8.9 0.0003 30.7 3.1 26 552-577 33-58 (70)
186 2zan_A Vacuolar protein sortin 53.5 3.1 0.0001 44.7 0.3 51 63-113 130-184 (444)
187 1ci4_A Protein (barrier-TO-aut 53.3 26 0.0009 29.4 5.9 54 549-608 8-66 (89)
188 2oap_1 GSPE-2, type II secreti 53.2 12 0.00041 41.1 5.1 19 93-113 259-277 (511)
189 2qby_A CDC6 homolog 1, cell di 53.1 2.6 8.8E-05 42.9 -0.3 20 94-113 43-62 (386)
190 4fcw_A Chaperone protein CLPB; 52.9 4.5 0.00015 40.2 1.4 17 97-113 48-64 (311)
191 3pfi_A Holliday junction ATP-d 52.9 7.4 0.00025 39.3 3.1 44 65-113 27-72 (338)
192 1ofh_A ATP-dependent HSL prote 52.6 4.8 0.00017 39.8 1.6 18 96-113 50-67 (310)
193 4b4t_H 26S protease regulatory 52.2 9.8 0.00033 41.4 4.0 75 64-138 206-302 (467)
194 1q0u_A Bstdead; DEAD protein, 52.0 4.4 0.00015 38.3 1.2 23 88-112 35-57 (219)
195 1wg8_A Predicted S-adenosylmet 51.9 6.6 0.00022 40.0 2.5 44 548-593 130-179 (285)
196 3tka_A Ribosomal RNA small sub 51.5 4.4 0.00015 42.4 1.1 44 548-593 170-219 (347)
197 3pvs_A Replication-associated 51.0 7.4 0.00025 41.9 2.9 38 75-113 30-67 (447)
198 1s5l_U Photosystem II 12 kDa e 50.5 10 0.00034 34.4 3.1 43 539-581 70-112 (134)
199 2j0s_A ATP-dependent RNA helic 49.9 7.8 0.00027 40.0 2.7 25 87-113 67-91 (410)
200 3fht_A ATP-dependent RNA helic 49.9 7.1 0.00024 40.1 2.4 26 87-112 55-80 (412)
201 2fz4_A DNA repair protein RAD2 49.8 6.7 0.00023 38.1 2.1 23 89-113 103-125 (237)
202 2ewv_A Twitching motility prot 49.3 4.3 0.00015 42.6 0.7 28 86-113 126-153 (372)
203 4b3f_X DNA-binding protein smu 49.0 5.8 0.0002 44.6 1.7 27 87-114 197-223 (646)
204 3h1t_A Type I site-specific re 48.9 6.1 0.00021 43.6 1.8 30 84-114 187-216 (590)
205 1w5s_A Origin recognition comp 48.2 6.6 0.00022 40.5 1.9 25 89-113 40-69 (412)
206 1b22_A DNA repair protein RAD5 48.0 8.3 0.00028 33.9 2.2 47 556-609 24-79 (114)
207 3ci0_K Pseudopilin GSPK; gener 47.8 21 0.00073 36.2 5.6 43 562-604 103-174 (298)
208 3oiy_A Reverse gyrase helicase 47.5 7.5 0.00026 40.4 2.2 24 87-112 29-52 (414)
209 2chq_A Replication factor C sm 47.5 4.9 0.00017 39.9 0.7 21 93-113 35-55 (319)
210 1n0w_A DNA repair protein RAD5 47.4 6.1 0.00021 37.6 1.3 30 84-113 9-41 (243)
211 3pey_A ATP-dependent RNA helic 47.1 8.4 0.00029 39.1 2.4 27 87-113 35-61 (395)
212 1s2m_A Putative ATP-dependent 47.1 8.7 0.0003 39.4 2.6 25 87-113 51-75 (400)
213 3c1y_A DNA integrity scanning 46.6 24 0.00081 37.3 5.8 45 559-606 316-365 (377)
214 2z0m_A 337AA long hypothetical 46.2 9.8 0.00034 37.7 2.7 24 88-113 25-48 (337)
215 3u61_B DNA polymerase accessor 46.1 5.2 0.00018 40.3 0.7 18 96-113 48-65 (324)
216 3pxg_A Negative regulator of g 45.9 11 0.00037 40.6 3.2 41 65-113 178-218 (468)
217 2p5t_B PEZT; postsegregational 45.7 12 0.00042 36.4 3.3 31 82-112 13-48 (253)
218 1hqc_A RUVB; extended AAA-ATPa 45.5 10 0.00035 37.8 2.8 44 65-113 10-55 (324)
219 1qvr_A CLPB protein; coiled co 44.6 4.2 0.00014 47.4 -0.4 32 83-114 178-209 (854)
220 1sxj_E Activator 1 40 kDa subu 44.3 5.2 0.00018 40.6 0.3 15 99-113 39-53 (354)
221 2i4i_A ATP-dependent RNA helic 43.9 11 0.00038 38.8 2.8 24 88-113 46-69 (417)
222 2xvc_A ESCRT-III, SSO0910; cel 43.2 22 0.00075 27.5 3.5 37 572-609 13-50 (59)
223 3upu_A ATP-dependent DNA helic 43.0 9.6 0.00033 40.8 2.2 36 73-113 27-62 (459)
224 2w0m_A SSO2452; RECA, SSPF, un 43.0 8 0.00027 36.2 1.4 28 86-113 10-40 (235)
225 3i5x_A ATP-dependent RNA helic 42.7 13 0.00046 40.3 3.3 26 87-112 102-127 (563)
226 3b0x_A DNA polymerase beta fam 42.5 15 0.0005 41.0 3.6 48 560-607 55-112 (575)
227 2r44_A Uncharacterized protein 41.9 6.8 0.00023 39.6 0.7 24 88-113 40-63 (331)
228 2a1j_A DNA repair endonuclease 41.9 7.4 0.00025 30.3 0.8 28 549-578 27-55 (63)
229 1in4_A RUVB, holliday junction 41.8 5.4 0.00018 40.8 -0.0 16 98-113 53-68 (334)
230 4gp7_A Metallophosphoesterase; 41.8 6 0.0002 36.3 0.3 17 97-113 10-26 (171)
231 2db3_A ATP-dependent RNA helic 41.7 12 0.00042 39.5 2.7 24 87-112 86-109 (434)
232 1rif_A DAR protein, DNA helica 41.3 7.3 0.00025 38.5 0.9 24 88-113 122-145 (282)
233 2cvh_A DNA repair and recombin 41.2 8.8 0.0003 35.8 1.4 28 86-113 7-37 (220)
234 3fho_A ATP-dependent RNA helic 41.2 8.5 0.00029 41.7 1.4 25 88-112 150-174 (508)
235 3r8n_M 30S ribosomal protein S 41.2 24 0.00082 31.0 4.1 42 558-606 16-57 (114)
236 4a74_A DNA repair and recombin 41.1 9.8 0.00034 35.7 1.7 29 85-113 11-42 (231)
237 1sxj_B Activator 1 37 kDa subu 41.1 11 0.00038 37.2 2.2 21 93-113 39-59 (323)
238 1y7y_A C.AHDI; helix-turn-heli 41.0 28 0.00096 26.4 4.1 37 568-607 12-49 (74)
239 3b85_A Phosphate starvation-in 41.0 9.6 0.00033 36.5 1.6 26 86-113 14-39 (208)
240 3arc_U Photosystem II 12 kDa e 40.9 14 0.00048 31.5 2.5 43 539-581 33-75 (97)
241 2w9m_A Polymerase X; SAXS, DNA 40.9 20 0.00069 39.9 4.5 54 552-607 51-116 (578)
242 1jr3_A DNA polymerase III subu 40.8 9.5 0.00033 38.8 1.7 18 96-113 38-55 (373)
243 3lw7_A Adenylate kinase relate 40.5 8.6 0.00029 34.0 1.1 14 98-111 3-16 (179)
244 3b7h_A Prophage LP1 protein 11 40.5 26 0.00088 27.0 3.9 38 568-608 6-44 (78)
245 1ojl_A Transcriptional regulat 40.1 10 0.00035 38.3 1.8 19 94-112 23-41 (304)
246 3u5c_S 40S ribosomal protein S 40.0 29 0.001 31.8 4.6 42 558-607 30-72 (146)
247 1xti_A Probable ATP-dependent 40.0 14 0.00047 37.6 2.7 25 87-113 38-62 (391)
248 3c8u_A Fructokinase; YP_612366 39.7 11 0.00038 35.4 1.9 30 84-113 8-39 (208)
249 1r69_A Repressor protein CI; g 39.3 27 0.00092 26.0 3.7 35 570-607 2-37 (69)
250 1rz3_A Hypothetical protein rb 39.3 13 0.00044 34.8 2.2 30 84-113 7-39 (201)
251 2v1x_A ATP-dependent DNA helic 39.1 16 0.00054 40.7 3.3 24 87-112 52-75 (591)
252 2o3f_A Putative HTH-type trans 38.6 22 0.00074 30.7 3.4 43 563-607 19-62 (111)
253 2b5a_A C.BCLI; helix-turn-heli 38.6 32 0.0011 26.3 4.1 37 568-607 9-46 (77)
254 2dhr_A FTSH; AAA+ protein, hex 38.4 5 0.00017 44.1 -1.0 46 63-113 27-81 (499)
255 4a2p_A RIG-I, retinoic acid in 38.3 15 0.00051 39.4 2.8 25 87-113 15-39 (556)
256 1z3e_B DNA-directed RNA polyme 38.2 38 0.0013 27.2 4.5 34 553-586 36-69 (73)
257 2va8_A SSO2462, SKI2-type heli 38.0 23 0.00077 40.0 4.3 30 557-592 656-685 (715)
258 3iwf_A Transcription regulator 37.9 21 0.00071 30.7 3.1 45 562-608 14-59 (107)
259 3b9q_A Chloroplast SRP recepto 37.8 13 0.00045 37.7 2.2 17 97-113 101-117 (302)
260 3pxi_A Negative regulator of g 37.7 17 0.00057 41.6 3.2 30 84-113 189-218 (758)
261 3iz6_M 40S ribosomal protein S 37.7 30 0.001 31.9 4.3 42 558-606 28-69 (152)
262 2ewt_A BLDD, putative DNA-bind 37.2 47 0.0016 24.9 4.9 37 568-607 7-46 (71)
263 2ce7_A Cell division protein F 37.1 7.4 0.00025 42.4 0.1 46 63-113 12-66 (476)
264 3im1_A Protein SNU246, PRE-mRN 37.0 41 0.0014 34.3 5.8 43 558-606 157-208 (328)
265 1w36_D RECD, exodeoxyribonucle 37.0 11 0.00036 42.3 1.4 19 96-114 164-182 (608)
266 1um8_A ATP-dependent CLP prote 37.0 8.1 0.00028 40.0 0.4 18 96-113 72-89 (376)
267 2fwr_A DNA repair protein RAD2 36.7 12 0.00041 39.7 1.7 24 88-113 102-125 (472)
268 3cf2_A TER ATPase, transitiona 36.4 16 0.00056 42.4 2.9 75 64-138 201-297 (806)
269 1zug_A Phage 434 CRO protein; 35.6 33 0.0011 25.7 3.7 35 570-607 4-39 (71)
270 1fuu_A Yeast initiation factor 35.5 11 0.00036 38.5 1.0 24 87-112 51-74 (394)
271 1ly1_A Polynucleotide kinase; 35.5 11 0.00038 33.8 1.1 15 97-111 3-17 (181)
272 3tr0_A Guanylate kinase, GMP k 35.5 8.6 0.00029 35.6 0.3 16 98-113 9-24 (205)
273 2gk6_A Regulator of nonsense t 35.3 12 0.00041 41.9 1.5 25 88-114 189-213 (624)
274 1kgd_A CASK, peripheral plasma 35.3 8.5 0.00029 35.4 0.2 16 98-113 7-22 (180)
275 3tbk_A RIG-I helicase domain; 35.0 18 0.00062 38.5 2.8 23 88-112 13-35 (555)
276 3e70_C DPA, signal recognition 34.9 18 0.0006 37.3 2.6 18 96-113 129-146 (328)
277 2qag_C Septin-7; cell cycle, c 34.7 9.1 0.00031 41.0 0.3 23 91-113 26-48 (418)
278 1qhx_A CPT, protein (chloramph 34.6 12 0.00041 33.8 1.1 16 97-112 4-19 (178)
279 2wiu_B HTH-type transcriptiona 34.6 53 0.0018 25.8 5.0 37 568-607 11-48 (88)
280 2r1j_L Repressor protein C2; p 34.6 27 0.00093 25.9 3.0 35 570-607 6-41 (68)
281 2qnr_A Septin-2, protein NEDD5 34.4 8.8 0.0003 38.9 0.2 23 91-113 13-35 (301)
282 3tau_A Guanylate kinase, GMP k 34.4 10 0.00035 35.8 0.6 17 97-113 9-25 (208)
283 3nbx_X ATPase RAVA; AAA+ ATPas 34.3 18 0.00062 39.6 2.6 26 86-113 33-58 (500)
284 3sqw_A ATP-dependent RNA helic 34.3 22 0.00074 39.1 3.3 26 87-112 51-76 (579)
285 3hws_A ATP-dependent CLP prote 34.2 11 0.00037 38.8 0.8 17 96-112 51-67 (363)
286 3trf_A Shikimate kinase, SK; a 33.9 12 0.00042 34.0 1.1 14 98-111 7-20 (185)
287 2ykg_A Probable ATP-dependent 33.8 19 0.00064 40.2 2.7 22 89-112 23-44 (696)
288 4gl2_A Interferon-induced heli 33.6 18 0.00063 40.3 2.7 25 87-113 15-39 (699)
289 3pxi_A Negative regulator of g 33.6 19 0.00065 41.1 2.8 16 98-113 523-538 (758)
290 1adr_A P22 C2 repressor; trans 33.3 29 0.00098 26.5 3.0 35 570-607 6-41 (76)
291 2qen_A Walker-type ATPase; unk 33.3 14 0.00048 36.8 1.5 17 97-113 32-48 (350)
292 1r6b_X CLPA protein; AAA+, N-t 32.9 20 0.00068 40.8 2.8 31 84-114 195-225 (758)
293 2jlq_A Serine protease subunit 32.9 9.1 0.00031 40.9 -0.0 24 88-112 12-35 (451)
294 3j20_O 30S ribosomal protein S 32.9 36 0.0012 31.2 4.0 42 558-606 23-64 (148)
295 1lkx_A Myosin IE heavy chain; 32.7 20 0.00069 40.9 2.8 21 93-113 91-111 (697)
296 2xzm_M RPS18E; ribosome, trans 32.7 31 0.0011 31.9 3.5 42 558-606 30-71 (155)
297 1zp6_A Hypothetical protein AT 32.7 9.7 0.00033 34.8 0.1 17 97-113 10-26 (191)
298 2dr3_A UPF0273 protein PH0284; 32.6 17 0.00058 34.4 1.9 26 88-113 12-40 (247)
299 1hv8_A Putative ATP-dependent 32.5 20 0.00068 35.8 2.5 25 88-113 37-61 (367)
300 3iij_A Coilin-interacting nucl 32.2 13 0.00043 33.8 0.9 15 98-112 13-27 (180)
301 3a00_A Guanylate kinase, GMP k 32.1 9.6 0.00033 35.2 -0.0 15 99-113 4-18 (186)
302 2orw_A Thymidine kinase; TMTK, 31.9 8 0.00027 36.2 -0.6 17 98-114 5-21 (184)
303 1lvg_A Guanylate kinase, GMP k 31.8 9.7 0.00033 35.8 -0.0 16 98-113 6-21 (198)
304 2ef8_A C.ECOT38IS, putative tr 31.8 46 0.0016 25.8 4.1 36 569-607 10-46 (84)
305 1r6b_X CLPA protein; AAA+, N-t 31.5 24 0.00082 40.2 3.2 17 97-113 489-505 (758)
306 2og2_A Putative signal recogni 31.4 20 0.00068 37.5 2.3 17 97-113 158-174 (359)
307 2b8t_A Thymidine kinase; deoxy 31.2 10 0.00035 37.0 0.0 19 96-114 12-30 (223)
308 1sxj_A Activator 1 95 kDa subu 31.2 20 0.00068 39.0 2.3 18 96-113 77-94 (516)
309 3sop_A Neuronal-specific septi 31.1 11 0.00038 37.6 0.3 19 95-113 1-19 (270)
310 1w9i_A Myosin II heavy chain; 30.9 23 0.00077 41.0 2.8 21 93-113 169-189 (770)
311 3lfu_A DNA helicase II; SF1 he 30.7 12 0.00039 41.6 0.3 20 95-114 21-40 (647)
312 1ye8_A Protein THEP1, hypothet 30.6 10 0.00036 35.2 -0.0 15 99-113 3-17 (178)
313 1qvr_A CLPB protein; coiled co 30.5 23 0.0008 41.1 2.9 17 97-113 589-605 (854)
314 2v26_A Myosin VI; calmodulin-b 30.5 23 0.00079 41.0 2.8 21 93-113 137-157 (784)
315 1xn7_A Hypothetical protein YH 30.0 71 0.0024 25.8 4.9 36 572-609 5-41 (78)
316 2kpj_A SOS-response transcript 30.0 44 0.0015 27.0 3.8 37 568-607 8-45 (94)
317 2j41_A Guanylate kinase; GMP, 30.0 12 0.00041 34.5 0.3 16 98-113 8-23 (207)
318 1moz_A ARL1, ADP-ribosylation 29.8 16 0.00056 32.6 1.1 28 86-113 7-35 (183)
319 1c4o_A DNA nucleotide excision 29.8 23 0.0008 40.0 2.7 41 70-115 7-47 (664)
320 1lmb_3 Protein (lambda repress 29.4 27 0.00092 28.0 2.3 39 566-607 14-53 (92)
321 1kht_A Adenylate kinase; phosp 29.2 15 0.00053 33.2 0.9 16 97-112 4-19 (192)
322 4ag6_A VIRB4 ATPase, type IV s 29.2 10 0.00036 39.4 -0.3 17 97-113 36-52 (392)
323 2bdt_A BH3686; alpha-beta prot 29.1 12 0.00043 34.2 0.2 16 98-113 4-19 (189)
324 1x57_A Endothelial differentia 29.0 59 0.002 25.9 4.4 37 568-607 12-49 (91)
325 2ehv_A Hypothetical protein PH 29.0 12 0.00043 35.4 0.2 17 97-113 31-47 (251)
326 1wp9_A ATP-dependent RNA helic 28.9 18 0.00062 37.3 1.5 23 88-113 18-40 (494)
327 1rj9_A FTSY, signal recognitio 28.9 14 0.00046 37.7 0.4 17 97-113 103-119 (304)
328 1e9r_A Conjugal transfer prote 28.8 11 0.00039 39.7 -0.2 18 96-113 53-70 (437)
329 3vaa_A Shikimate kinase, SK; s 28.8 17 0.00059 33.8 1.1 15 98-112 27-41 (199)
330 3kb2_A SPBC2 prophage-derived 28.8 17 0.00059 32.2 1.1 15 98-112 3-17 (173)
331 1kag_A SKI, shikimate kinase I 28.7 16 0.00055 32.7 0.9 15 98-112 6-20 (173)
332 3s8q_A R-M controller protein; 28.7 56 0.0019 25.4 4.1 37 568-607 10-47 (82)
333 1kk8_A Myosin heavy chain, str 28.7 24 0.00083 41.1 2.6 21 93-113 166-186 (837)
334 1w7j_A Myosin VA; motor protei 28.6 26 0.00089 40.6 2.8 20 93-112 153-172 (795)
335 3lnc_A Guanylate kinase, GMP k 28.4 15 0.00051 35.0 0.7 16 98-113 29-44 (231)
336 1g8x_A Myosin II heavy chain f 28.4 25 0.00086 41.9 2.7 20 93-112 169-188 (1010)
337 4db1_A Myosin-7; S1DC, cardiac 28.3 27 0.00091 40.5 2.8 21 93-113 168-188 (783)
338 1znw_A Guanylate kinase, GMP k 28.0 13 0.00046 34.8 0.2 16 98-113 22-37 (207)
339 1i84_S Smooth muscle myosin he 27.9 26 0.00091 42.4 2.8 21 93-113 166-186 (1184)
340 2a6c_A Helix-turn-helix motif; 27.9 58 0.002 25.7 4.1 37 569-608 18-55 (83)
341 3f6w_A XRE-family like protein 27.8 45 0.0015 26.0 3.4 36 569-607 14-50 (83)
342 2fna_A Conserved hypothetical 27.8 18 0.00062 36.0 1.2 17 97-113 31-47 (357)
343 2ycu_A Non muscle myosin 2C, a 27.8 27 0.00092 41.6 2.8 20 93-112 143-162 (995)
344 2k9q_A Uncharacterized protein 27.7 46 0.0016 25.7 3.4 35 570-607 3-38 (77)
345 3k4g_A DNA-directed RNA polyme 27.6 58 0.002 27.1 4.0 32 554-585 40-71 (86)
346 1gm5_A RECG; helicase, replica 27.6 23 0.00077 41.0 2.1 28 86-113 379-406 (780)
347 3gfk_B DNA-directed RNA polyme 27.6 63 0.0022 26.4 4.2 35 552-586 42-76 (79)
348 2xzl_A ATP-dependent helicase 27.6 18 0.00063 41.9 1.3 17 98-114 377-393 (802)
349 1ypw_A Transitional endoplasmi 27.5 23 0.00077 41.1 2.1 52 62-113 199-255 (806)
350 2ze6_A Isopentenyl transferase 27.3 17 0.00058 35.6 0.8 14 98-111 3-16 (253)
351 3eus_A DNA-binding protein; st 27.3 81 0.0028 25.0 4.9 36 569-607 14-50 (86)
352 3e1s_A Exodeoxyribonuclease V, 27.2 19 0.00066 40.0 1.4 18 97-114 205-222 (574)
353 3qq6_A HTH-type transcriptiona 27.1 52 0.0018 25.8 3.6 35 570-607 11-46 (78)
354 2wjy_A Regulator of nonsense t 27.0 20 0.00068 41.6 1.5 25 88-114 365-389 (800)
355 3bs4_A Uncharacterized protein 26.8 30 0.001 34.5 2.6 49 85-146 7-58 (260)
356 1u9l_A Transcription elongatio 26.8 76 0.0026 25.2 4.5 46 558-609 6-60 (70)
357 3uie_A Adenylyl-sulfate kinase 26.8 27 0.00092 32.4 2.1 20 94-113 23-42 (200)
358 1xx6_A Thymidine kinase; NESG, 26.8 12 0.00039 35.6 -0.5 17 98-114 10-26 (191)
359 2r8r_A Sensor protein; KDPD, P 26.7 13 0.00046 36.5 -0.0 20 96-115 6-25 (228)
360 2dfs_A Myosin-5A; myosin-V, in 26.5 29 0.001 41.7 2.8 20 93-112 153-172 (1080)
361 1coo_A RNA polymerase alpha su 26.5 73 0.0025 27.1 4.5 34 552-585 50-83 (98)
362 2rhm_A Putative kinase; P-loop 26.5 17 0.0006 33.0 0.7 16 97-112 6-21 (193)
363 3kl4_A SRP54, signal recogniti 26.5 39 0.0013 36.3 3.5 18 96-113 97-114 (433)
364 2yhs_A FTSY, cell division pro 26.4 24 0.00081 38.8 1.9 17 97-113 294-310 (503)
365 2vqe_M 30S ribosomal protein S 26.4 31 0.0011 30.8 2.3 42 558-606 17-58 (126)
366 2gza_A Type IV secretion syste 26.2 14 0.00047 38.5 -0.1 19 93-113 174-192 (361)
367 4anj_A Unconventional myosin-V 26.2 30 0.001 41.4 2.8 21 93-113 141-161 (1052)
368 4a4z_A Antiviral helicase SKI2 26.1 30 0.001 41.1 2.8 23 88-112 48-70 (997)
369 2qor_A Guanylate kinase; phosp 26.0 19 0.00065 33.6 0.9 15 98-112 14-28 (204)
370 3cm0_A Adenylate kinase; ATP-b 25.8 21 0.00072 32.3 1.1 15 98-112 6-20 (186)
371 1tev_A UMP-CMP kinase; ploop, 25.7 19 0.00066 32.5 0.8 16 97-112 4-19 (196)
372 2ziu_A MUS81 protein; helix-ha 25.5 35 0.0012 34.6 2.9 24 553-576 232-255 (311)
373 2pt7_A CAG-ALFA; ATPase, prote 25.5 14 0.00049 37.9 -0.1 19 93-113 170-188 (330)
374 3g5g_A Regulatory protein; tra 25.5 66 0.0022 26.7 4.1 35 569-606 28-63 (99)
375 2nrt_A Uvrabc system protein C 25.4 19 0.00067 35.2 0.8 26 550-577 192-218 (220)
376 1z6g_A Guanylate kinase; struc 25.3 15 0.00051 35.1 -0.0 15 99-113 26-40 (218)
377 1z00_B DNA repair endonuclease 25.2 18 0.00062 29.9 0.5 28 549-578 41-69 (84)
378 1v5w_A DMC1, meiotic recombina 25.0 35 0.0012 35.0 2.8 29 85-113 108-139 (343)
379 1y63_A LMAJ004144AAA protein; 25.0 20 0.00069 32.9 0.9 15 98-112 12-26 (184)
380 1uaa_A REP helicase, protein ( 24.9 18 0.00063 40.5 0.6 20 95-114 14-33 (673)
381 4ghj_A Probable transcriptiona 24.8 81 0.0028 26.6 4.6 37 567-606 34-71 (101)
382 1gku_B Reverse gyrase, TOP-RG; 24.8 31 0.001 41.2 2.6 23 87-111 64-86 (1054)
383 1a5t_A Delta prime, HOLB; zinc 24.7 32 0.0011 35.0 2.4 27 87-113 14-41 (334)
384 1odf_A YGR205W, hypothetical 3 24.7 41 0.0014 33.8 3.1 20 94-113 29-48 (290)
385 2k02_A Ferrous iron transport 24.7 74 0.0025 26.4 4.2 36 572-609 5-41 (87)
386 4a2q_A RIG-I, retinoic acid in 24.6 34 0.0012 39.3 2.8 25 87-113 256-280 (797)
387 1nks_A Adenylate kinase; therm 24.6 20 0.00069 32.3 0.8 14 98-111 3-16 (194)
388 3kta_A Chromosome segregation 24.5 16 0.00056 33.1 0.1 16 98-113 28-43 (182)
389 1uf9_A TT1252 protein; P-loop, 24.4 26 0.0009 32.0 1.5 20 93-112 5-24 (203)
390 1knq_A Gluconate kinase; ALFA/ 24.3 23 0.0008 31.8 1.1 16 97-112 9-24 (175)
391 2px0_A Flagellar biosynthesis 24.3 16 0.00056 36.9 0.1 17 97-113 106-122 (296)
392 1e6c_A Shikimate kinase; phosp 24.2 21 0.00073 31.8 0.8 15 98-112 4-18 (173)
393 2lnb_A Z-DNA-binding protein 1 24.2 55 0.0019 26.8 3.1 48 561-609 11-59 (80)
394 4a2w_A RIG-I, retinoic acid in 24.1 28 0.00097 40.9 2.1 25 87-113 256-280 (936)
395 2i3b_A HCR-ntpase, human cance 23.9 17 0.00057 34.3 0.0 16 98-113 3-18 (189)
396 2i1q_A DNA repair and recombin 23.8 36 0.0012 34.2 2.5 30 84-113 83-115 (322)
397 3t5d_A Septin-7; GTP-binding p 23.8 18 0.00062 35.6 0.3 21 93-113 5-25 (274)
398 3t61_A Gluconokinase; PSI-biol 23.6 23 0.00077 32.8 0.9 16 97-112 19-34 (202)
399 1xjc_A MOBB protein homolog; s 23.6 28 0.00097 32.3 1.6 16 98-113 6-21 (169)
400 2vli_A Antibiotic resistance p 23.5 23 0.00079 31.9 0.9 15 97-111 6-20 (183)
401 2zts_A Putative uncharacterize 23.2 25 0.00086 33.2 1.2 25 88-112 19-46 (251)
402 4e9f_A Methyl-CPG-binding doma 23.0 40 0.0014 31.2 2.5 52 552-606 66-122 (161)
403 3kz3_A Repressor protein CI; f 23.0 70 0.0024 24.9 3.6 36 569-607 12-48 (80)
404 2q0z_X Protein Pro2281; SEC63, 22.9 85 0.0029 32.1 5.2 29 559-593 162-190 (339)
405 1oyw_A RECQ helicase, ATP-depe 22.9 22 0.00074 38.8 0.7 25 87-113 33-57 (523)
406 2v6i_A RNA helicase; membrane, 22.9 29 0.00098 36.8 1.6 16 98-113 4-19 (431)
407 2rhf_A DNA helicase RECQ; HRDC 22.8 47 0.0016 26.4 2.5 22 552-573 41-62 (77)
408 2iyv_A Shikimate kinase, SK; t 22.8 24 0.00081 32.0 0.9 13 99-111 5-17 (184)
409 1via_A Shikimate kinase; struc 22.7 24 0.00083 31.8 0.9 14 98-111 6-19 (175)
410 2bwj_A Adenylate kinase 5; pho 22.5 23 0.00079 32.3 0.7 15 98-112 14-28 (199)
411 2oca_A DAR protein, ATP-depend 22.4 31 0.0011 36.8 1.8 24 89-114 123-146 (510)
412 2gno_A DNA polymerase III, gam 22.3 32 0.0011 34.8 1.8 30 84-113 6-35 (305)
413 2bbw_A Adenylate kinase 4, AK4 22.2 20 0.00068 34.5 0.2 17 97-113 28-44 (246)
414 2zj8_A DNA helicase, putative 22.1 25 0.00085 39.8 1.0 44 556-605 644-696 (720)
415 2zj8_A DNA helicase, putative 22.1 92 0.0032 35.0 5.8 35 575-610 633-668 (720)
416 1s96_A Guanylate kinase, GMP k 22.0 21 0.0007 34.4 0.3 16 98-113 18-33 (219)
417 2pt5_A Shikimate kinase, SK; a 22.0 25 0.00087 31.1 0.9 15 98-112 2-16 (168)
418 2z43_A DNA repair and recombin 21.8 36 0.0012 34.5 2.1 30 84-113 92-124 (324)
419 3dm5_A SRP54, signal recogniti 21.8 54 0.0019 35.3 3.5 34 542-575 369-402 (443)
420 2e1f_A Werner syndrome ATP-dep 21.7 48 0.0016 28.3 2.5 22 552-573 51-72 (103)
421 3rc3_A ATP-dependent RNA helic 21.7 25 0.00084 40.0 0.8 15 97-111 156-170 (677)
422 3asz_A Uridine kinase; cytidin 21.6 20 0.00069 33.3 0.1 16 98-113 8-23 (211)
423 1ukz_A Uridylate kinase; trans 21.5 26 0.00089 32.3 0.9 16 97-112 16-31 (203)
424 1zd8_A GTP:AMP phosphotransfer 21.5 25 0.00084 33.3 0.7 16 97-112 8-23 (227)
425 1qf9_A UMP/CMP kinase, protein 21.5 25 0.00085 31.7 0.7 15 98-112 8-22 (194)
426 3fb4_A Adenylate kinase; psych 21.4 26 0.00089 32.6 0.9 14 99-112 3-16 (216)
427 2eyq_A TRCF, transcription-rep 21.4 51 0.0017 39.8 3.5 27 86-112 614-640 (1151)
428 2r2a_A Uncharacterized protein 21.3 26 0.0009 33.3 0.8 16 98-113 7-22 (199)
429 2kv2_A Bloom syndrome protein; 21.2 48 0.0016 27.0 2.3 22 552-573 43-64 (85)
430 2ga8_A Hypothetical 39.9 kDa p 21.0 58 0.002 34.1 3.5 21 93-113 21-41 (359)
431 1aky_A Adenylate kinase; ATP:A 21.0 27 0.00092 32.8 0.8 15 97-111 5-19 (220)
432 2c95_A Adenylate kinase 1; tra 21.0 26 0.00088 31.9 0.7 16 97-112 10-25 (196)
433 3tif_A Uncharacterized ABC tra 20.9 22 0.00075 34.5 0.2 16 98-113 33-48 (235)
434 1pzn_A RAD51, DNA repair and r 20.9 50 0.0017 34.0 3.0 25 86-110 118-145 (349)
435 2xgj_A ATP-dependent RNA helic 20.9 39 0.0013 40.2 2.3 21 90-112 97-117 (1010)
436 2qag_A Septin-2, protein NEDD5 20.8 22 0.00076 36.9 0.2 23 91-113 32-54 (361)
437 3a4m_A L-seryl-tRNA(SEC) kinas 20.8 29 0.001 33.9 1.1 16 97-112 5-20 (260)
438 1htw_A HI0065; nucleotide-bind 20.5 23 0.00078 32.3 0.2 17 97-113 34-50 (158)
439 4ddu_A Reverse gyrase; topoiso 20.5 42 0.0014 40.3 2.6 24 87-112 86-109 (1104)
440 3vk0_A NHTF, transcriptional r 20.5 1.1E+02 0.0038 25.6 4.6 38 567-607 19-57 (114)
441 2yvu_A Probable adenylyl-sulfa 20.4 33 0.0011 31.2 1.3 17 96-112 13-29 (186)
442 3l9o_A ATP-dependent RNA helic 20.3 36 0.0012 40.9 2.0 24 87-112 192-215 (1108)
443 3dl0_A Adenylate kinase; phosp 20.3 28 0.00097 32.4 0.9 14 99-112 3-16 (216)
444 1wud_A ATP-dependent DNA helic 20.3 51 0.0018 27.1 2.3 22 552-573 49-70 (89)
445 2va8_A SSO2462, SKI2-type heli 20.3 39 0.0013 38.0 2.2 32 577-609 646-678 (715)
446 3crm_A TRNA delta(2)-isopenten 20.2 36 0.0012 35.1 1.7 15 97-111 6-20 (323)
447 3umf_A Adenylate kinase; rossm 20.2 29 0.001 33.5 0.9 14 98-111 31-44 (217)
448 3m6a_A ATP-dependent protease 20.2 23 0.00079 38.9 0.2 18 96-113 108-125 (543)
449 1vma_A Cell division protein F 20.2 28 0.00095 35.4 0.8 17 97-113 105-121 (306)
450 3sr0_A Adenylate kinase; phosp 20.2 29 0.00098 33.1 0.9 13 99-111 3-15 (206)
451 2p6r_A Afuhel308 helicase; pro 20.1 26 0.00089 39.4 0.6 24 85-110 31-54 (702)
No 1
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=100.00 E-value=3e-81 Score=668.30 Aligned_cols=321 Identities=26% Similarity=0.422 Sum_probs=290.7
Q ss_pred CCCCCCeEEEEEeCCCCChhhccCCcEEEeCCCCCCCCeEEEEeCCCCCCCceeeEeeeeecCCCChHHHHhhhhHHHHH
Q 035971 10 LNISKKARVIAKIRGFADLEAESANWVCIQKPNGEDSDSVTVSFGEQPSSRKECYKLDYCYEQNEGNGIIFAREVKPLIS 89 (614)
Q Consensus 10 ~~~~~~VrV~vRvRP~~~~e~~~~~~v~v~~~~~~d~~~v~v~~~~~~~~~~~~F~FD~VF~~~asQ~eVf~~~v~plV~ 89 (614)
++++++|+|+||+||+.+.|...+.++.+... + .+++..... .+..+.|.||+||+++++|++||+. +.|+|+
T Consensus 1 ee~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~---~--~~~v~~~~~-~~~~~~f~FD~Vf~~~~~Q~~Vy~~-~~~lv~ 73 (369)
T 3cob_A 1 EDMKGKIRVYCRLRPLCEKEIIAKERNAIRSV---D--EFTVEHLWK-DDKAKQHMYDRVFDGNATQDDVFED-TKYLVQ 73 (369)
T ss_dssp ---CCBCEEEEEECCCCHHHHHTTCCBCEEEC---S--SSEEEEECT-TSCEEEEECSEEECTTCCHHHHHHT-TTHHHH
T ss_pred CCCCCCeEEEEECCCCChhhccCCCcEEEEcC---C--cEEEEecCC-CCCceEEecCEEECCCCCcceehhh-hhhhhH
Confidence 46889999999999999998877666666432 2 224433221 2356899999999999999999998 799999
Q ss_pred HHhcCCceEEEeeccCCCCcceEeecCCCCcchhHHHHHHHHhhccc----cCceEEEEEEEEecceeccccCccc---c
Q 035971 90 EVFNGINATIVACGAKGSGKTRVIQGSYEEPGLAALAVDEILSISEK----MGKSITISFYEIFQDHVYDLLDPKQ---Q 162 (614)
Q Consensus 90 ~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~GLipral~~LF~~~~~----~~~sV~vS~~EIYnE~V~DLL~~~~---~ 162 (614)
++++|||+||||||||||||||||+|+..++||+||++++||+.++. ..+.|++||+|||||+|+|||++.. .
T Consensus 74 ~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~ 153 (369)
T 3cob_A 74 SAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRL 153 (369)
T ss_dssp HHHTTCEEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEECSSCEEESSCCSSSCCC
T ss_pred hhhcCCceEEEEECCCCCCCeEeecCCCCCCchhHHHHHHHHHHHHhhccCceeEEEEEEEEEeCceeeecCCCcccCCc
Confidence 99999999999999999999999999999999999999999998874 4689999999999999999998753 5
Q ss_pred cceEEecCCCceEecCCeEEEcCCHHHHHHHHHHHHhcCcccccccCCCCCCceEEEEEEEeeccC---ccccceeEEEe
Q 035971 163 EVQILENGQGKIQLKGLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVSPVSN---FLPTGKMNFVD 239 (614)
Q Consensus 163 ~l~i~ed~~~~~~v~gLtev~V~S~ee~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~I~v~~~~~---~~~~skL~fVD 239 (614)
.+.+++++.++++|.|++++.|.|++|++.+|..|.++|++++|.+|..|||||+||+|++.+.+. ....|+|+|||
T Consensus 154 ~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVD 233 (369)
T 3cob_A 154 KLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVD 233 (369)
T ss_dssp CCEEEECTTSCEEEETCCCEEECSHHHHHHHHHHHHHHTCCCSCCTTCHHHHSEEEEEEEEEEEETTTCCEEEEEEEEEE
T ss_pred ceEEEECCCCCEEccCCEEEEeCCHHHHHHHHHHHhhcceeecccCCCCCCcceEEEEEEEEEecCCCCcEEEEEEEEEe
Confidence 799999999999999999999999999999999999999999999999999999999999987654 34579999999
Q ss_pred CCCccccccccCccchhhhhHHhhhhHHHHHHHHHHHhcCCCCccCCCChhhhhhhhccCCCceEEEEEEcCcC------
Q 035971 240 LAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANESHVPYRESKLTRMLQESLGCKSKILMLTCLLPR------ 313 (614)
Q Consensus 240 LAGsEr~~k~~~~g~~l~E~~~INkSL~aL~~vI~aL~~~~~~vPyRdSkLTrLLqdsLgGnskt~mI~~vsP~------ 313 (614)
||||||..++++.|.+++|+..||+||++|++||.+|+.++.||||||||||+||||+|||||+|+||+||||+
T Consensus 234 LAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~E 313 (369)
T 3cob_A 234 LAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDE 313 (369)
T ss_dssp CCCSSCCCCCSSCSHHHHHHHHHTHHHHHHHHHHHHHHTTCSCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHH
T ss_pred CCCCCcccccCccchhhHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcCCHHHHHHHHhcCCCccEEEEEEeCCccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHhHhhhhhcCCCccccc
Q 035971 314 SVSTTKTQTGSQMHSSTKKATGVAS 338 (614)
Q Consensus 314 Tl~TL~~asr~~r~i~nk~~~~~~~ 338 (614)
|++||+||+|+ +.|+|++..|...
T Consensus 314 Tl~TLrfA~ra-k~i~~~~~~n~~~ 337 (369)
T 3cob_A 314 THNSLTYASRV-RSIVNDPSKNVSS 337 (369)
T ss_dssp HHHHHHHHHHH-HTCBCCCCCCEEC
T ss_pred HHHHHHHHHHH-hhcccCCcccCCH
Confidence 99999999999 9999999877654
No 2
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=100.00 E-value=8.3e-81 Score=661.07 Aligned_cols=319 Identities=29% Similarity=0.425 Sum_probs=260.5
Q ss_pred CCCeEEEEEeCCCCChhhcc--CCcEEEeCCCCCCCCeEEEEeCCC------CCCCceeeEeeeeecCCCChHHHHhhhh
Q 035971 13 SKKARVIAKIRGFADLEAES--ANWVCIQKPNGEDSDSVTVSFGEQ------PSSRKECYKLDYCYEQNEGNGIIFAREV 84 (614)
Q Consensus 13 ~~~VrV~vRvRP~~~~e~~~--~~~v~v~~~~~~d~~~v~v~~~~~------~~~~~~~F~FD~VF~~~asQ~eVf~~~v 84 (614)
.++|||+||+||+.+.|... ..++.+.. +...+.+..+.. .....+.|.||+||+++++|++||+.++
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~----~~~~v~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~ 78 (350)
T 2vvg_A 3 SDNIKVIVRCRPLNARETRENALNIIRMDE----ASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSCNYGIFQASF 78 (350)
T ss_dssp -CBCEEEEEECCCCHHHHHTTCCBCEEEEG----GGTEEEECC--------------EEEECSEEECTTCCHHHHHHHTT
T ss_pred CCCeEEEEEeCCCChhhhccCCceEEEEcC----CCCEEEEeeccccccccccCCCceEeeCCEEECCCcchhHHHHHHH
Confidence 48999999999999988765 34565543 222343322211 1234689999999999999999999999
Q ss_pred HHHHHHHhcCCceEEEeeccCCCCcceEeecCCCCcchhHHHHHHHHhhcc----ccCceEEEEEEEEecceeccccCcc
Q 035971 85 KPLISEVFNGINATIVACGAKGSGKTRVIQGSYEEPGLAALAVDEILSISE----KMGKSITISFYEIFQDHVYDLLDPK 160 (614)
Q Consensus 85 ~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~GLipral~~LF~~~~----~~~~sV~vS~~EIYnE~V~DLL~~~ 160 (614)
+|+|+++|+|||+||||||||||||||||+|+.+++|||||++++||+.++ ...+.|.+||+|||||+|+|||++.
T Consensus 79 ~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~ 158 (350)
T 2vvg_A 79 KPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNN 158 (350)
T ss_dssp HHHHHHHHTTCCEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTCCTTEEEEEEEEEEEEETTEEEETTTTE
T ss_pred HHHHHHHhCCCceeEEeecCCCCCCCEEeecCCccCchHHHHHHHHHHHHHhhccCCcEEEEEEEEEEeCCEEEEcccCC
Confidence 999999999999999999999999999999999999999999999999886 3567899999999999999999854
Q ss_pred cccceEEecCCCceEecCCeEEEcCCHHHHHHHHHHHHhcCcccccccCCCCCCceEEEEEEEeeccC-----cccccee
Q 035971 161 QQEVQILENGQGKIQLKGLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVSPVSN-----FLPTGKM 235 (614)
Q Consensus 161 ~~~l~i~ed~~~~~~v~gLtev~V~S~ee~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~I~v~~~~~-----~~~~skL 235 (614)
..+.+++++.++++|.|++++.|.+++|+++++..|..+|++++|.+|..|||||+||+|++.+... ....|+|
T Consensus 159 -~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~skl 237 (350)
T 2vvg_A 159 -TKLPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVIRVGKL 237 (350)
T ss_dssp -EEECEEEETTTEEEETTCCCEEESSHHHHHHHHHHHHHHC----------CTTCEEEEEEEEEEEEC----CEEEEEEE
T ss_pred -cCceeeEcCCCCEEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcceEEEEEEEEEeeccCCCccEEEEEE
Confidence 5699999999999999999999999999999999999999999999999999999999999987543 2356999
Q ss_pred EEEeCCCccccccccCccchhhhhHHhhhhHHHHHHHHHHHhcCCCCccCCCChhhhhhhhccCCCceEEEEEEcCcC--
Q 035971 236 NFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANESHVPYRESKLTRMLQESLGCKSKILMLTCLLPR-- 313 (614)
Q Consensus 236 ~fVDLAGsEr~~k~~~~g~~l~E~~~INkSL~aL~~vI~aL~~~~~~vPyRdSkLTrLLqdsLgGnskt~mI~~vsP~-- 313 (614)
+|||||||||..++++.|.+++|+..||+||++|++||.+|++++.||||||||||+||||+||||++|+||+||||+
T Consensus 238 ~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~ 317 (350)
T 2vvg_A 238 NLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKLTRLLQDSLGGNSKTLMCANISPAST 317 (350)
T ss_dssp EEEECCCCCC---------------CTTHHHHHHHHHHHHHHHTCSSCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGG
T ss_pred EEEeCCCCCccccccccHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCCCccccHHHHHHHHhcCCCccEEEEEEeCCccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ----chhHHHHHHhHhhhhhcCCCcccc
Q 035971 314 ----SVSTTKTQTGSQMHSSTKKATGVA 337 (614)
Q Consensus 314 ----Tl~TL~~asr~~r~i~nk~~~~~~ 337 (614)
|++||+||+|+ +.|+|++..|..
T Consensus 318 ~~~ETl~TL~fA~ra-k~i~n~~~~n~~ 344 (350)
T 2vvg_A 318 NYDETMSTLRYADRA-KQIKNKPRINED 344 (350)
T ss_dssp GHHHHHHHHHHHHHH-TTCBCCCCCCBS
T ss_pred cHHHHHHHHHHHHHH-hhccccceecCC
Confidence 99999999999 999999987754
No 3
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=4e-81 Score=669.80 Aligned_cols=323 Identities=31% Similarity=0.482 Sum_probs=248.7
Q ss_pred CCCCCCeEEEEEeCCCCChhhcc--CCcEEEeCCCCCCCCeEEEEeCCCCCCCceeeEeeeeecCCCChHHHHhhhhHHH
Q 035971 10 LNISKKARVIAKIRGFADLEAES--ANWVCIQKPNGEDSDSVTVSFGEQPSSRKECYKLDYCYEQNEGNGIIFAREVKPL 87 (614)
Q Consensus 10 ~~~~~~VrV~vRvRP~~~~e~~~--~~~v~v~~~~~~d~~~v~v~~~~~~~~~~~~F~FD~VF~~~asQ~eVf~~~v~pl 87 (614)
....++|+|+||+||+.+.|... ..|+... +...+.+.... .......|.||+||+++++|++||+.++.|+
T Consensus 17 ~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~-----~~~~~~i~~~~-~~~~~~~f~FD~Vf~~~~tQ~~Vy~~~~~pl 90 (388)
T 3bfn_A 17 QGPPARVRVAVRLRPFVDGTAGASDPPCVRGM-----DSCSLEIANWR-NHQETLKYQFDAFYGERSTQQDIYAGSVQPI 90 (388)
T ss_dssp SSCCCCCEEEEEECCCC-----------------------------------CEEEEECSEEECTTCCHHHHHHHHTGGG
T ss_pred cCCCCCEEEEEECCCCChhhhccCCCceEEec-----CCCeEEEecCC-CCCCeeEEEcceEecCCCCHhHHHHHHHHHH
Confidence 34569999999999999988654 3344332 22233332211 1234678999999999999999999999999
Q ss_pred HHHHhcCCceEEEeeccCCCCcceEeecCCCCcchhHHHHHHHHhhccc-------cCceEEEEEEEEecceeccccCcc
Q 035971 88 ISEVFNGINATIVACGAKGSGKTRVIQGSYEEPGLAALAVDEILSISEK-------MGKSITISFYEIFQDHVYDLLDPK 160 (614)
Q Consensus 88 V~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~GLipral~~LF~~~~~-------~~~sV~vS~~EIYnE~V~DLL~~~ 160 (614)
|+++|+|||+||||||||||||||||+|+.+++|||||++++||+.+.. ..+.|++||+|||||+|+|||++.
T Consensus 91 v~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~Giipra~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~ 170 (388)
T 3bfn_A 91 LRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPA 170 (388)
T ss_dssp HHHHTTTCCEEEEEESCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHTSTTCSEEEEEEEEEEEEETTEEEESSSCS
T ss_pred HHHhhcCceeeEeeecCCCCCCCeEeecCccccchhHHHHHHHHHHHHHhhccCCCceEEEEEEEEEEECCeeeehhccC
Confidence 9999999999999999999999999999999999999999999998763 457899999999999999999999
Q ss_pred cccceEEecCCCceEecCCeEEEcCCHHHHHHHHHHHHhcCcccccccCCCCCCceEEEEEEEeeccC----ccccceeE
Q 035971 161 QQEVQILENGQGKIQLKGLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVSPVSN----FLPTGKMN 236 (614)
Q Consensus 161 ~~~l~i~ed~~~~~~v~gLtev~V~S~ee~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~I~v~~~~~----~~~~skL~ 236 (614)
...+.|++++.++++|.|++++.|.|++|++++|..|..+|++++|.+|..|||||+||+|+|.+... ....|+|+
T Consensus 171 ~~~l~ired~~~~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~skL~ 250 (388)
T 3bfn_A 171 SGDLVIREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQREGKLY 250 (388)
T ss_dssp SCBCCCEECTTSCEECTTCCCEECCSHHHHHHHHHHHTC-----------CGGGSEEEEEEEEEEEESSTTCCEEEEEEE
T ss_pred CCCceEEEcCCCCEEeccceEEEeCCHHHHHHHHHHHhhccccccccCCCCCCCCeEEEEEEEEEeccCCCCceeEEEEE
Confidence 88999999999999999999999999999999999999999999999999999999999999987643 23579999
Q ss_pred EEeCCCccccccccCccchhhhhHHhhhhHHHHHHHHHHHhcCCCCccCCCChhhhhhhhccCCCceEEEEEEcCcC---
Q 035971 237 FVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANESHVPYRESKLTRMLQESLGCKSKILMLTCLLPR--- 313 (614)
Q Consensus 237 fVDLAGsEr~~k~~~~g~~l~E~~~INkSL~aL~~vI~aL~~~~~~vPyRdSkLTrLLqdsLgGnskt~mI~~vsP~--- 313 (614)
|||||||||..++++.|.+++|+..||+||++|++||.+|+.+..||||||||||+||||+||||++|+||+||||+
T Consensus 251 lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSkLTrlLqdsLgGnskT~mIa~iSP~~~~ 330 (388)
T 3bfn_A 251 LIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRF 330 (388)
T ss_dssp EEECCCTTC--------------CCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTTTSSSTTCEEEEEEEECCSGGG
T ss_pred EEECCCCcccccccCccchhHHHhHhhhhHHHHHHHHHHHhcCCCCCcCcccHHHHHHHHhhCCCccEEEEEEECCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ---chhHHHHHHhHhhhhhcCCCcccccc
Q 035971 314 ---SVSTTKTQTGSQMHSSTKKATGVASV 339 (614)
Q Consensus 314 ---Tl~TL~~asr~~r~i~nk~~~~~~~~ 339 (614)
|++||+||+|+ +.|+|++..|....
T Consensus 331 ~~ETlsTLrfA~ra-k~I~n~p~~n~~~~ 358 (388)
T 3bfn_A 331 YLDTVSALNFAARS-KEVINRPFTNESLQ 358 (388)
T ss_dssp HHHHHHHHHHHCSE-EEEC----------
T ss_pred HHHHHHHHHHHHHH-hhCcCcCcccCCCC
Confidence 99999999999 99999988665543
No 4
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=100.00 E-value=1.2e-80 Score=663.06 Aligned_cols=319 Identities=26% Similarity=0.427 Sum_probs=271.0
Q ss_pred CCCCCeEEEEEeCCCCChhhccCCcEEEeCCCCCCCCeEEEEeCCCCCCCceeeEeeeeecCCCChHHHHhhhhHHHHHH
Q 035971 11 NISKKARVIAKIRGFADLEAESANWVCIQKPNGEDSDSVTVSFGEQPSSRKECYKLDYCYEQNEGNGIIFAREVKPLISE 90 (614)
Q Consensus 11 ~~~~~VrV~vRvRP~~~~e~~~~~~v~v~~~~~~d~~~v~v~~~~~~~~~~~~F~FD~VF~~~asQ~eVf~~~v~plV~~ 90 (614)
...++|+|+||+||+.+.|...+....+..+.+.+... +.+. .+.|.||+||+++++|++||+.++.|+|++
T Consensus 8 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~--i~~~------~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~ 79 (365)
T 2y65_A 8 PAEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENC--ISIA------GKVYLFDKVFKPNASQEKVYNEAAKSIVTD 79 (365)
T ss_dssp CCEEECEEEEEECCCCHHHHHTTCCBCEECCSSSTTCE--EEET------TEEEECSEEECTTCCHHHHHHHHTHHHHHH
T ss_pred CCCCCeEEEEEcCcCChhHhccCCceEEEeCCCCCCcE--EEEC------CEEEeCceEecCCCCHHHHHHHhhhhHHHH
Confidence 35689999999999999987664433333222212223 3332 368999999999999999999999999999
Q ss_pred HhcCCceEEEeeccCCCCcceEeecCC---CCcchhHHHHHHHHhhccc----cCceEEEEEEEEecceeccccCccccc
Q 035971 91 VFNGINATIVACGAKGSGKTRVIQGSY---EEPGLAALAVDEILSISEK----MGKSITISFYEIFQDHVYDLLDPKQQE 163 (614)
Q Consensus 91 vl~G~N~tI~aYGqTGSGKTyTm~G~~---~~~GLipral~~LF~~~~~----~~~sV~vS~~EIYnE~V~DLL~~~~~~ 163 (614)
+|+|||+||||||||||||||||+|.. ..+|||||++++||+.+.. ..+.|++||+|||||+|+|||++....
T Consensus 80 ~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~ 159 (365)
T 2y65_A 80 VLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKVN 159 (365)
T ss_dssp HHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEEEETTEEEETTCTTCCS
T ss_pred HhCCCceEEEeecCCCCCCceEEecCCCCcccCChHHHHHHHHHHHHHhccCCceEEEEEEEEEEECCeeeecccCCcCC
Confidence 999999999999999999999999964 4579999999999998863 468999999999999999999998889
Q ss_pred ceEEecCCCceEecCCeEEEcCCHHHHHHHHHHHHhcCcccccccCCCCCCceEEEEEEEeeccC---ccccceeEEEeC
Q 035971 164 VQILENGQGKIQLKGLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVSPVSN---FLPTGKMNFVDL 240 (614)
Q Consensus 164 l~i~ed~~~~~~v~gLtev~V~S~ee~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~I~v~~~~~---~~~~skL~fVDL 240 (614)
+.+++++.++++|.|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|++.+... ....|+|+||||
T Consensus 160 l~i~e~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDL 239 (365)
T 2y65_A 160 LSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSGKLYLVDL 239 (365)
T ss_dssp BCEEECSSSCEEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETTTCCEEEEEEEEEEC
T ss_pred ceEEECCCCCEEecCCEEEecCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecCCCCEeEEEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999987654 345799999999
Q ss_pred CCccccccccCccchhhhhHHhhhhHHHHHHHHHHHhcC-CCCccCCCChhhhhhhhccCCCceEEEEEEcCcC------
Q 035971 241 AGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNAN-ESHVPYRESKLTRMLQESLGCKSKILMLTCLLPR------ 313 (614)
Q Consensus 241 AGsEr~~k~~~~g~~l~E~~~INkSL~aL~~vI~aL~~~-~~~vPyRdSkLTrLLqdsLgGnskt~mI~~vsP~------ 313 (614)
|||||..++++.|.+++|+..||+||++|++||.+|+.+ ..||||||||||+||||+||||++|+||+||||+
T Consensus 240 AGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~E 319 (365)
T 2y65_A 240 AGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFNESE 319 (365)
T ss_dssp CCCCC----------------CCHHHHHHHHHHHHHHHCCCSCCCGGGCHHHHHTGGGTTSSSEEEEEEEECCBGGGHHH
T ss_pred CCCCcchhcCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCHHHHHHHhhcCCCccEEEEEEecCccCCHHH
Confidence 999999999999999999999999999999999999886 5799999999999999999999999999999998
Q ss_pred chhHHHHHHhHhhhhhcCCCccccc
Q 035971 314 SVSTTKTQTGSQMHSSTKKATGVAS 338 (614)
Q Consensus 314 Tl~TL~~asr~~r~i~nk~~~~~~~ 338 (614)
|++||+||+|+ +.|+|++..|...
T Consensus 320 Tl~TL~fA~ra-k~I~n~~~~n~~~ 343 (365)
T 2y65_A 320 TKSTLDFGRRA-KTVKNVVCVNEEL 343 (365)
T ss_dssp HHHHHHHHHHH-TTCEEECCCEEEC
T ss_pred HHHHHHHHHHH-hcccCcceeCCCC
Confidence 99999999999 9999998877653
No 5
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=100.00 E-value=6.1e-80 Score=654.53 Aligned_cols=316 Identities=22% Similarity=0.323 Sum_probs=277.2
Q ss_pred CCCeEEEEEeCCCCChhhccC--CcEEEeCCCCCCCCeEEEEeCCCCCCCceeeEeeeeecCCCChHHHHhhhhHHHHHH
Q 035971 13 SKKARVIAKIRGFADLEAESA--NWVCIQKPNGEDSDSVTVSFGEQPSSRKECYKLDYCYEQNEGNGIIFAREVKPLISE 90 (614)
Q Consensus 13 ~~~VrV~vRvRP~~~~e~~~~--~~v~v~~~~~~d~~~v~v~~~~~~~~~~~~F~FD~VF~~~asQ~eVf~~~v~plV~~ 90 (614)
.++|+|+||+||+.+.|...+ .++.+.. +.. ++...+ ..+.|.||+||+++++|++||+.++.|+|++
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~----~~~--~i~~~~----~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plv~~ 72 (349)
T 1t5c_A 3 EGAVAVCVRVRPLNSREESLGETAQVYWKT----DNN--VIYQVD----GSKSFNFDRVFHGNETTKNVYEEIAAPIIDS 72 (349)
T ss_dssp CCCEEEEEEECCCSCSSCTTTTCCCCCEEE----ETT--EEEETT----SSCEEECSCEECTTSCHHHHHHHTTHHHHHH
T ss_pred CCCEEEEEECCCCChhhhccCCCcEEEEeC----CCC--eEEECC----CCeEEECCEEECCCCCHHHHHHHHHHHHHHH
Confidence 589999999999998886542 2333321 111 222222 2468999999999999999999999999999
Q ss_pred HhcCCceEEEeeccCCCCcceEeecCCCCcchhHHHHHHHHhhccc---cCceEEEEEEEEecceeccccCccc--ccce
Q 035971 91 VFNGINATIVACGAKGSGKTRVIQGSYEEPGLAALAVDEILSISEK---MGKSITISFYEIFQDHVYDLLDPKQ--QEVQ 165 (614)
Q Consensus 91 vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~GLipral~~LF~~~~~---~~~sV~vS~~EIYnE~V~DLL~~~~--~~l~ 165 (614)
+|+|||+||||||||||||||||+|+.+++|||||++++||+.+++ ..+.|+|||+|||||+|+|||++.. ..+.
T Consensus 73 ~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~ 152 (349)
T 1t5c_A 73 AIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQKMKPLI 152 (349)
T ss_dssp HHTTCCEEEEEEESTTSSHHHHHTBCSSSBCHHHHHHHHHHHHGGGCTTEEEEEEEEEEEEETTEEEESSSSSCTTCCEE
T ss_pred HHcCCccceeeecCCCCCCCeEEecCCCCCchHHHHHHHHHHHHHhCcCCcEEEEEEEEEEeCCEEEEccCCCCCCCCce
Confidence 9999999999999999999999999999999999999999999874 5688999999999999999998754 5799
Q ss_pred EEecCCCceEecCCeEEEcCCHHHHHHHHHHHHhcCcccccccCCCCCCceEEEEEEEeeccC--------ccccceeEE
Q 035971 166 ILENGQGKIQLKGLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVSPVSN--------FLPTGKMNF 237 (614)
Q Consensus 166 i~ed~~~~~~v~gLtev~V~S~ee~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~I~v~~~~~--------~~~~skL~f 237 (614)
+++++.++++|.|++++.|.+++|++++|..|.++|++++|.+|..|||||+||+|.+.+... ....|+|+|
T Consensus 153 i~ed~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~~skL~l 232 (349)
T 1t5c_A 153 IREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNL 232 (349)
T ss_dssp EEETTTTEEEETTCCCEECSSHHHHHHHHHHHHHTTSSSSSSSSCTTTTCEEEEEEEEEEEECC-------CEEEEEEEE
T ss_pred EEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhcccccccccCCCCCCCceEEEEEEEEEeccCCCcCcCccEEEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999987543 235689999
Q ss_pred EeCCCccccccccCccchhhhhHHhhhhHHHHHHHHHHHhcCC--CCccCCCChhhhhhhhccCCCceEEEEEEcCcC--
Q 035971 238 VDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANE--SHVPYRESKLTRMLQESLGCKSKILMLTCLLPR-- 313 (614)
Q Consensus 238 VDLAGsEr~~k~~~~g~~l~E~~~INkSL~aL~~vI~aL~~~~--~~vPyRdSkLTrLLqdsLgGnskt~mI~~vsP~-- 313 (614)
||||||||..++++.|.+++|+..||+||++|++||.+|+.++ .||||||||||+||||+||||++|+|||||||.
T Consensus 233 VDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~ 312 (349)
T 1t5c_A 233 VDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITPVSF 312 (349)
T ss_dssp EECCCGGGTC-------CCCSSSCCCHHHHHHHHHHHHHHHTCCTTSSCGGGSHHHHHTGGGTTSSSEEEEEEEECTTCS
T ss_pred EECCCCccccccCCccccchhhhHHhHHHHHHHHHHHHHhccCCCCCCcccccHHHHHHHHhcCCCceEEEEEEeCCCCH
Confidence 9999999999999999999999999999999999999998765 699999999999999999999999999999998
Q ss_pred --chhHHHHHHhHhhhhhcCCCcccccc
Q 035971 314 --SVSTTKTQTGSQMHSSTKKATGVASV 339 (614)
Q Consensus 314 --Tl~TL~~asr~~r~i~nk~~~~~~~~ 339 (614)
|++||+||+|+ +.|+|+++.|....
T Consensus 313 ~ETlsTL~fA~ra-k~I~n~~~vn~~~~ 339 (349)
T 1t5c_A 313 DETLTALQFASTA-KYMKNTPYVNEVST 339 (349)
T ss_dssp HHHHHHHHHHHHH-TTCCCCCCCCEEC-
T ss_pred HHHHHHHHHHHHH-hhcccCceeccCCC
Confidence 99999999999 99999998776543
No 6
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=100.00 E-value=1.5e-79 Score=652.90 Aligned_cols=316 Identities=27% Similarity=0.431 Sum_probs=286.9
Q ss_pred CCCeEEEEEeCCCCChhhcc--CCcEEEeCCCCCCCCeEEEEeCCCCCCCceeeEeeeeecCCCChHHHHhhhhHHHHHH
Q 035971 13 SKKARVIAKIRGFADLEAES--ANWVCIQKPNGEDSDSVTVSFGEQPSSRKECYKLDYCYEQNEGNGIIFAREVKPLISE 90 (614)
Q Consensus 13 ~~~VrV~vRvRP~~~~e~~~--~~~v~v~~~~~~d~~~v~v~~~~~~~~~~~~F~FD~VF~~~asQ~eVf~~~v~plV~~ 90 (614)
.++|+|+||+||+.+.|... ..++.+.. ...+ .+.. ....+.|.||+||+++++|++||+.+++|+|++
T Consensus 5 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~-----~~~~--~~~~--~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~ 75 (355)
T 1goj_A 5 ANSIKVVARFRPQNRVEIESGGQPIVTFQG-----PDTC--TVDS--KEAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDD 75 (355)
T ss_dssp SCBCEEEEEECCCCHHHHTTTCCBCEEECS-----TTEE--EECS--TTCCEEEECSEEECTTCCHHHHHHHHTHHHHHH
T ss_pred CCCeEEEEECCCCChHHhhcCCceEEEEcC-----CCeE--EEcc--CCCccEEeeCeEECCCCccHHHHHHHHHHHHHH
Confidence 58999999999999888755 34555532 1222 3322 234689999999999999999999999999999
Q ss_pred HhcCCceEEEeeccCCCCcceEeecC----CCCcchhHHHHHHHHhhccc----cCceEEEEEEEEecceeccccCcccc
Q 035971 91 VFNGINATIVACGAKGSGKTRVIQGS----YEEPGLAALAVDEILSISEK----MGKSITISFYEIFQDHVYDLLDPKQQ 162 (614)
Q Consensus 91 vl~G~N~tI~aYGqTGSGKTyTm~G~----~~~~GLipral~~LF~~~~~----~~~sV~vS~~EIYnE~V~DLL~~~~~ 162 (614)
+|+|||+||||||||||||||||+|+ .+++|||||++++||+.+.. ..+.|++||+|||||+|+|||++...
T Consensus 76 ~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~ 155 (355)
T 1goj_A 76 ILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQND 155 (355)
T ss_dssp HTTTCCEEEEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSTTCC
T ss_pred HhCCCcceEEEECCCCCCcceEeecCCCCCcccCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEECCEEEEcccCccC
Confidence 99999999999999999999999996 36689999999999998753 46899999999999999999999988
Q ss_pred cceEEecCCCceEecCCeEEEcCCHHHHHHHHHHHHhcCcccccccCCCCCCceEEEEEEEeeccC---ccccceeEEEe
Q 035971 163 EVQILENGQGKIQLKGLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVSPVSN---FLPTGKMNFVD 239 (614)
Q Consensus 163 ~l~i~ed~~~~~~v~gLtev~V~S~ee~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~I~v~~~~~---~~~~skL~fVD 239 (614)
.+.+++++.++++|.|++++.|.|++|++++|..|..+|++++|.+|..|||||+||+|++.+... ....|+|+|||
T Consensus 156 ~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVD 235 (355)
T 1goj_A 156 NLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLVD 235 (355)
T ss_dssp SCCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEETTTTEEEEEEEEEEE
T ss_pred CceeEEcCCCCEeecCCEEEeCCCHHHHHHHHHHHHhhcCcccccCCCCCCCceEEEEEEEEEeccCCCceeeeEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999987653 34579999999
Q ss_pred CCCccccccccCccchhhhhHHhhhhHHHHHHHHHHHhcC-CCCccCCCChhhhhhhhccCCCceEEEEEEcCcC-----
Q 035971 240 LAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNAN-ESHVPYRESKLTRMLQESLGCKSKILMLTCLLPR----- 313 (614)
Q Consensus 240 LAGsEr~~k~~~~g~~l~E~~~INkSL~aL~~vI~aL~~~-~~~vPyRdSkLTrLLqdsLgGnskt~mI~~vsP~----- 313 (614)
|||+||..++++.|.+++|+..||+||++|++||.+|+.+ ..||||||||||+||||+||||++|+||+||||+
T Consensus 236 LAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGns~t~mI~~isP~~~~~~ 315 (355)
T 1goj_A 236 LAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDA 315 (355)
T ss_dssp CCCCSCCTTSSSCCCCTTTTGGGTSHHHHHHHHHHHHHHCSCSCCCGGGCHHHHHTGGGTTSSCEEEEEEEECCBGGGHH
T ss_pred CCCCCcccccccchhhHHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCccCHHHHHHHHHhCCCCcEEEEEEECcccccHH
Confidence 9999999999999999999999999999999999999886 5799999999999999999999999999999999
Q ss_pred -chhHHHHHHhHhhhhhcCCCccccc
Q 035971 314 -SVSTTKTQTGSQMHSSTKKATGVAS 338 (614)
Q Consensus 314 -Tl~TL~~asr~~r~i~nk~~~~~~~ 338 (614)
|++||+||+|+ +.|+|++..|...
T Consensus 316 ETl~TL~fA~ra-k~I~n~~~vn~~~ 340 (355)
T 1goj_A 316 ETLSTLRFGMRA-KSIKNKAKVNAEL 340 (355)
T ss_dssp HHHHHHHHHHHH-HTCBCCCCCCSSS
T ss_pred HHHHHHHHHHHH-hhccCCceeCCCC
Confidence 99999999999 9999999877653
No 7
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=100.00 E-value=1e-79 Score=656.69 Aligned_cols=324 Identities=27% Similarity=0.398 Sum_probs=274.6
Q ss_pred CCCCCCCeEEEEEeCCCCChhhcc--CCcEEEeCCCCCCCCeEEEEeCCCC-CCCceeeEeeeeecCCCChHHHHhhhhH
Q 035971 9 GLNISKKARVIAKIRGFADLEAES--ANWVCIQKPNGEDSDSVTVSFGEQP-SSRKECYKLDYCYEQNEGNGIIFAREVK 85 (614)
Q Consensus 9 ~~~~~~~VrV~vRvRP~~~~e~~~--~~~v~v~~~~~~d~~~v~v~~~~~~-~~~~~~F~FD~VF~~~asQ~eVf~~~v~ 85 (614)
..+.+++|||+||+||+.+.|... ..++.+.. +...+.+..+... ....+.|.||+||+++++|++||+.+++
T Consensus 16 ~~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~----~~~~v~v~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~ 91 (372)
T 3b6u_A 16 FQGSSESVRVVVRCRPMNGKEKAASYDKVVDVDV----KLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQFELYDETFR 91 (372)
T ss_dssp -----CBCEEEEEECCCCHHHHHTTCCBCEEEET----TTTEEEECCTTCTTTCCCEEEECSEEECTTCCHHHHHHHTHH
T ss_pred cCCCCCCeEEEEEcCCCChhhhccCCceEEEEeC----CCCEEEEECCCCCCCCCceEEEcCeEeCCcCchHHHHHHHHH
Confidence 345679999999999999888665 34555543 2234444322211 2346899999999999999999999999
Q ss_pred HHHHHHhcCCceEEEeeccCCCCcceEeecCC---CCcchhHHHHHHHHhhcc---ccCceEEEEEEEEecceeccccCc
Q 035971 86 PLISEVFNGINATIVACGAKGSGKTRVIQGSY---EEPGLAALAVDEILSISE---KMGKSITISFYEIFQDHVYDLLDP 159 (614)
Q Consensus 86 plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~---~~~GLipral~~LF~~~~---~~~~sV~vS~~EIYnE~V~DLL~~ 159 (614)
|+|+++|+|||+||||||||||||||||+|.. +++|||||++++||..+. ...+.|++||+|||||+|+|||++
T Consensus 92 plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~ 171 (372)
T 3b6u_A 92 PLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSK 171 (372)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHHTBCTTSGGGBCHHHHHHHHHHHHHHTCSSCEEEEEEEEEEEETTEEEETTSS
T ss_pred HHHHHHhCCCeeeEEeecCCCCCCCEeEecCCCCcccCCcHHHHHHHHHHHhhhccCCceEEEEEEEEEeCCEEEECCCC
Confidence 99999999999999999999999999999965 456999999999999886 356899999999999999999998
Q ss_pred cc-ccceEEecCCCceEecCCeEEEcCCHHHHHHHHHHHHhcCcccccccCCCCCCceEEEEEEEeeccC------cccc
Q 035971 160 KQ-QEVQILENGQGKIQLKGLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVSPVSN------FLPT 232 (614)
Q Consensus 160 ~~-~~l~i~ed~~~~~~v~gLtev~V~S~ee~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~I~v~~~~~------~~~~ 232 (614)
.. ..+.+++++.++++|.|++++.|.|++|++++|..|..+|++++|.+|..|||||+||+|+|..... ....
T Consensus 172 ~~~~~l~i~e~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~ 251 (372)
T 3b6u_A 172 DQTKRLELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIRV 251 (372)
T ss_dssp CTTCCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTTTCSSHHHHHHTSEEEEEEEEEEEC-----CCCEEE
T ss_pred CCCCCceEEECCCCcEecCCCEEEEecCHHHHHHHHHHHHHhcCcccccCCCCCCcceEEEEEEEEEeecCCCCCcceEE
Confidence 64 5799999999999999999999999999999999999999999999999999999999999987542 2456
Q ss_pred ceeEEEeCCCccccccccCccchhhhhHHhhhhHHHHHHHHHHHhcCC-CCccCCCChhhhhhhhccCCCceEEEEEEcC
Q 035971 233 GKMNFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANE-SHVPYRESKLTRMLQESLGCKSKILMLTCLL 311 (614)
Q Consensus 233 skL~fVDLAGsEr~~k~~~~g~~l~E~~~INkSL~aL~~vI~aL~~~~-~~vPyRdSkLTrLLqdsLgGnskt~mI~~vs 311 (614)
|+|+|||||||||..++++.|.+++|+..||+||++|++||.+|++++ .||||||||||+||||+||||++|+||+|||
T Consensus 252 skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~vs 331 (372)
T 3b6u_A 252 GKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVG 331 (372)
T ss_dssp EEEEEEECCCCCE----------EEEGGGCCHHHHHHHHHHHHHHCC---CCCGGGSHHHHHTTTTTTSSSEEEEEEEEC
T ss_pred EEEEEEECCCCccccccCcchhhhhhHhhhhhhHHHHHHHHHHHhcCCCCCCcccccHHHHHHHHhcCCCccEEEEEEeC
Confidence 999999999999999999999999999999999999999999998865 6999999999999999999999999999999
Q ss_pred cC------chhHHHHHHhHhhhhhcCCCcccc
Q 035971 312 PR------SVSTTKTQTGSQMHSSTKKATGVA 337 (614)
Q Consensus 312 P~------Tl~TL~~asr~~r~i~nk~~~~~~ 337 (614)
|+ |++||+||+|+ +.|+|++..|..
T Consensus 332 P~~~~~~ETlsTLrfA~ra-k~I~n~~~~n~~ 362 (372)
T 3b6u_A 332 PASYNVEETLTTLRYANRA-KNIKNKPRVNED 362 (372)
T ss_dssp CBGGGHHHHHHHHHHHHHH-TTCBCCCCCCC-
T ss_pred CcccCHHHHHHHHHHHHHH-hhccccceecCC
Confidence 99 99999999999 999999887654
No 8
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=100.00 E-value=2.1e-79 Score=668.05 Aligned_cols=324 Identities=24% Similarity=0.413 Sum_probs=269.3
Q ss_pred CCCCCCCeEEEEEeCCCCChhhccC-CcEEEeCCCCCCCCeEEEEeCCCC------------CCCceeeEeeeeecC---
Q 035971 9 GLNISKKARVIAKIRGFADLEAESA-NWVCIQKPNGEDSDSVTVSFGEQP------------SSRKECYKLDYCYEQ--- 72 (614)
Q Consensus 9 ~~~~~~~VrV~vRvRP~~~~e~~~~-~~v~v~~~~~~d~~~v~v~~~~~~------------~~~~~~F~FD~VF~~--- 72 (614)
..+..++|||+|||||+.+.|...+ .|+....+ +...+++..+... ....+.|.||+||++
T Consensus 33 ~~~~~~~vrV~vRvRP~~~~E~~~~~~~~v~~~~---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~F~FD~vF~~~~~ 109 (443)
T 2owm_A 33 SKDPGANVRVVVRVRAFLPRELERNAECIVEMDP---ATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNT 109 (443)
T ss_dssp -CCCCEECEEEEEEECCCHHHHHTTCCCCEEECS---SSCEEEECCCC---------------CCCEEEECSEEEEESCT
T ss_pred cCCCCCCeEEEEEeCCCChHHhhcCCceEEEEcC---CCccEEEecCCCcccccccccccccccCCceEecCeEeCCCCc
Confidence 4567789999999999999886553 33333222 2223344332210 123689999999986
Q ss_pred ----CCChHHHHhhhhHHHHHHHhcCCceEEEeeccCCCCcceEeecCCCCcchhHHHHHHHHhhccc-------cCceE
Q 035971 73 ----NEGNGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQGSYEEPGLAALAVDEILSISEK-------MGKSI 141 (614)
Q Consensus 73 ----~asQ~eVf~~~v~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~GLipral~~LF~~~~~-------~~~sV 141 (614)
+++|++||+.++.|+|+++|+|||+||||||||||||||||+|+.+++|||||++++||+.++. ..|.|
T Consensus 110 ~~~~~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIipr~~~~lF~~i~~~~~~~~~~~~~V 189 (443)
T 2owm_A 110 EDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNV 189 (443)
T ss_dssp TSTTCCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCTTSCCHHHHHHHHHHHHHHHTTTTSTTCEEEE
T ss_pred CCccCCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCCCCCchHHHHHHHHHHHHHhhhcccCCceEEE
Confidence 4899999999999999999999999999999999999999999999999999999999998763 46789
Q ss_pred EEEEEEEecceeccccCcc-----cccceEEecCCCceEecCCeEEEcCCHHHHHHHHHHHHhcCcccccccCCCCCCce
Q 035971 142 TISFYEIFQDHVYDLLDPK-----QQEVQILENGQGKIQLKGLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSH 216 (614)
Q Consensus 142 ~vS~~EIYnE~V~DLL~~~-----~~~l~i~ed~~~~~~v~gLtev~V~S~ee~~~ll~~g~~~R~~~~t~~n~~SSRSH 216 (614)
+|||+|||||+|+|||++. ...+.|++++.++++|.||+++.|.+++|++++|..|..+|++++|.+|..|||||
T Consensus 190 ~vS~lEIYnE~i~DLL~~~~~~~~~~~l~ire~~~~g~~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH 269 (443)
T 2owm_A 190 KVSYFEVYNEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSH 269 (443)
T ss_dssp EEEEEEEETTEEEETTSCCCSSCCCCCCEEEEETTTEEEEETCCCEECCSHHHHHHHHHHHHTTSCBCSSSSSCBCTTEE
T ss_pred EEEEEEEECCEeeEccCccccCCcccccceeECCCCCEeccCCEEEEcCCHHHHHHHHHHHHhhCCcccCcCCCccCCCe
Confidence 9999999999999999873 23599999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeeccC-------ccccceeEEEeCCCccccccccCccchhhhhHHhhhhHHHHHHHHHHHhcCC---------
Q 035971 217 KGLIVNVSPVSN-------FLPTGKMNFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANE--------- 280 (614)
Q Consensus 217 ~if~I~v~~~~~-------~~~~skL~fVDLAGsEr~~k~~~~g~~l~E~~~INkSL~aL~~vI~aL~~~~--------- 280 (614)
+||+|+|.+... ....|+|+|||||||||..++++.|.+++|+..||+||++|++||.+|++++
T Consensus 270 ~Ifti~v~~~~~~~~~~~~~~~~skL~lVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~ 349 (443)
T 2owm_A 270 AVFTIMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSP 349 (443)
T ss_dssp EEEEEEEEEEC-------CCEEEEEEEEEECCCCCC--------------CCSSHHHHHHHHHHHHHCC-----------
T ss_pred EEEEEEEEEeecccCCCCcceEEEEEEEEECCCCccccccCCccccccchhhhcHHHHHHHHHHHHHhcccccccccccc
Confidence 999999987532 2356999999999999999999999999999999999999999999998643
Q ss_pred -------------CCccCCCChhhhhhhhccCCCceEEEEEEcCcC----chhHHHHHHhHhhhhhcCCCccc
Q 035971 281 -------------SHVPYRESKLTRMLQESLGCKSKILMLTCLLPR----SVSTTKTQTGSQMHSSTKKATGV 336 (614)
Q Consensus 281 -------------~~vPyRdSkLTrLLqdsLgGnskt~mI~~vsP~----Tl~TL~~asr~~r~i~nk~~~~~ 336 (614)
.||||||||||+||||+||||++|+||+||||+ |++||+||+|+ +.|+|+++.|.
T Consensus 350 ~~~g~~~~~~~~~~hVPYRdSkLTrLLqdsLgGnskT~mIa~iSP~~~~ETlsTLrfA~ra-k~I~n~~~vN~ 421 (443)
T 2owm_A 350 VKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPTDYDETLSTLRYADQA-KRIRTRAVVNQ 421 (443)
T ss_dssp --------------CCCGGGSHHHHHSTTTTTSSCEEEEEEEECSSCHHHHHHHHHHHHHH-TTCEECCCCCC
T ss_pred cccccccccccCCCcccCcccHhHHHHHHhhCCCCcEEEEEEeccccHHHHHHHHHHHHHH-hhccccceecc
Confidence 389999999999999999999999999999999 99999999999 99999998776
No 9
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=100.00 E-value=6.5e-80 Score=648.94 Aligned_cols=303 Identities=26% Similarity=0.413 Sum_probs=276.9
Q ss_pred CCCCeEEEEEeCCCCChhhccCC--cEEEeCCCCCCCCeEEEEeCCCCCCCceeeEeeeeecCCCChHHHHhhhhHHHHH
Q 035971 12 ISKKARVIAKIRGFADLEAESAN--WVCIQKPNGEDSDSVTVSFGEQPSSRKECYKLDYCYEQNEGNGIIFAREVKPLIS 89 (614)
Q Consensus 12 ~~~~VrV~vRvRP~~~~e~~~~~--~v~v~~~~~~d~~~v~v~~~~~~~~~~~~F~FD~VF~~~asQ~eVf~~~v~plV~ 89 (614)
..++|||+||+||+.+.|...+. ++.+.. .+.+ .+. .+.|.||+||+++++|++||+.+++|+|+
T Consensus 5 ~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~-----~~~~--~~~------~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~ 71 (325)
T 1bg2_A 5 AECNIKVMCRFRPLNESEVNRGDKYIAKFQG-----EDTV--VIA------SKPYAFDRVFQSSTSQEQVYNDCAKKIVK 71 (325)
T ss_dssp SSCEEEEEEEECCCCHHHHHHTCCBCCEEET-----TTEE--EET------TEEEECSEEECTTCCHHHHHHHHTHHHHH
T ss_pred CCCCEEEEEEcCCCChhHhccCCeeEEEECC-----CCeE--EEC------CEEEECCeEeCCCCCHHHHHHHHhhhhHH
Confidence 46899999999999998876533 344432 2233 332 36899999999999999999999999999
Q ss_pred HHhcCCceEEEeeccCCCCcceEeecCCC---CcchhHHHHHHHHhhcc----ccCceEEEEEEEEecceeccccCcccc
Q 035971 90 EVFNGINATIVACGAKGSGKTRVIQGSYE---EPGLAALAVDEILSISE----KMGKSITISFYEIFQDHVYDLLDPKQQ 162 (614)
Q Consensus 90 ~vl~G~N~tI~aYGqTGSGKTyTm~G~~~---~~GLipral~~LF~~~~----~~~~sV~vS~~EIYnE~V~DLL~~~~~ 162 (614)
++++|||+||||||||||||||||+|+.. .+||+||++++||+.+. ...+.|++||+|||||+|+|||++...
T Consensus 72 ~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~~ 151 (325)
T 1bg2_A 72 DVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKT 151 (325)
T ss_dssp HHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHHCSSEEEEEEEEEEEEETTEEEESSCTTCC
T ss_pred HHhCCCeEEEEEECCCCCCCceEecccCCCcccCccHHHHHHHHHHHHHhccCCceEEEEEEEEEEecCeeeecccCCCC
Confidence 99999999999999999999999999754 45999999999999875 356899999999999999999999888
Q ss_pred cceEEecCCCceEecCCeEEEcCCHHHHHHHHHHHHhcCcccccccCCCCCCceEEEEEEEeeccC---ccccceeEEEe
Q 035971 163 EVQILENGQGKIQLKGLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVSPVSN---FLPTGKMNFVD 239 (614)
Q Consensus 163 ~l~i~ed~~~~~~v~gLtev~V~S~ee~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~I~v~~~~~---~~~~skL~fVD 239 (614)
.+.+++++.++++|.|++++.|.|++|++++|..|.++|++++|.+|..|||||+||+|++.+... ....|+|+|||
T Consensus 152 ~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skl~lVD 231 (325)
T 1bg2_A 152 NLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVD 231 (325)
T ss_dssp SBCEEECTTSCEEETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETTTCCEEEEEEEEEE
T ss_pred CceEEECCCCCEEecCceEEeCCCHHHHHHHHHHHHhhCceeecCCCCCCCCCeEEEEEEEEEEecCCCcEEEEEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999987654 34579999999
Q ss_pred CCCccccccccCccchhhhhHHhhhhHHHHHHHHHHHhcCCCCccCCCChhhhhhhhccCCCceEEEEEEcCcC------
Q 035971 240 LAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANESHVPYRESKLTRMLQESLGCKSKILMLTCLLPR------ 313 (614)
Q Consensus 240 LAGsEr~~k~~~~g~~l~E~~~INkSL~aL~~vI~aL~~~~~~vPyRdSkLTrLLqdsLgGnskt~mI~~vsP~------ 313 (614)
||||||..++++.|.+++|+..||+||++|++||.+|++++.||||||||||+||||+||||++|+||+||||+
T Consensus 232 LAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGns~t~mia~vsP~~~~~~E 311 (325)
T 1bg2_A 232 LAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESE 311 (325)
T ss_dssp CCCSCCCCCCSSSCTTSCCCCCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHGGGTSSSSCEEEEEEEECCBGGGHHH
T ss_pred CCCCCcccccCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHhCCCCcEEEEEEECCccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHhHhhhh
Q 035971 314 SVSTTKTQTGSQMHS 328 (614)
Q Consensus 314 Tl~TL~~asr~~r~i 328 (614)
|++||+||+|+ +.|
T Consensus 312 Tl~TL~fa~ra-k~I 325 (325)
T 1bg2_A 312 TKSTLLFGQRA-KTI 325 (325)
T ss_dssp HHHHHHHHHTS-CCC
T ss_pred HHHHHHHHHHh-ccC
Confidence 99999999999 654
No 10
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=2.6e-79 Score=651.39 Aligned_cols=319 Identities=25% Similarity=0.423 Sum_probs=245.1
Q ss_pred CCCCCCCCeEEEEEeCCCCChhhccC--CcEEEeCCC----CCCCCeEEEEeCCC--------CCCCceeeEeeeeecCC
Q 035971 8 TGLNISKKARVIAKIRGFADLEAESA--NWVCIQKPN----GEDSDSVTVSFGEQ--------PSSRKECYKLDYCYEQN 73 (614)
Q Consensus 8 ~~~~~~~~VrV~vRvRP~~~~e~~~~--~~v~v~~~~----~~d~~~v~v~~~~~--------~~~~~~~F~FD~VF~~~ 73 (614)
+.++++++|||+||+||+...|...+ .++.+.+.. +.....+.+..+.. .......|.||+||+++
T Consensus 4 ~~~d~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~ 83 (355)
T 3lre_A 4 TEEDLCHHMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVFDET 83 (355)
T ss_dssp --------CEEEEEECCCCHHHHHTTCCBSEEECSSSEEEEC------------------------CCEEEECSEEECTT
T ss_pred ChhhccCCCEEEEEeCcCChHHHhcCCceEEEecCCceEEecCCCCcceeecccccccccchhccCCCceEEeceEECCC
Confidence 45678899999999999999887653 344443210 00000011000000 01235689999999999
Q ss_pred CChHHHHhhhhHHHHHHHhcCCceEEEeeccCCCCcceEeecCCCCcchhHHHHHHHHhhccc----cCceEEEEEEEEe
Q 035971 74 EGNGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQGSYEEPGLAALAVDEILSISEK----MGKSITISFYEIF 149 (614)
Q Consensus 74 asQ~eVf~~~v~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~GLipral~~LF~~~~~----~~~sV~vS~~EIY 149 (614)
++|++||+.++.|+|+++|+|||+||||||||||||||||+|+.+++||+||++++||+.+++ ..+.|.|||+|||
T Consensus 84 ~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~~~~~~~v~vS~~EIY 163 (355)
T 3lre_A 84 STQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVY 163 (355)
T ss_dssp CCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEE
T ss_pred CChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCCCCCCeeehhhhHHHHhhhhhccCceEEEEEEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999998764 4578999999999
Q ss_pred cceeccccCcccccceEEecCCCceEecCCeEEEcCCHHHHHHHHHHHHhcCcccccccCCCCCCceEEEEEEEeeccC-
Q 035971 150 QDHVYDLLDPKQQEVQILENGQGKIQLKGLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVSPVSN- 228 (614)
Q Consensus 150 nE~V~DLL~~~~~~l~i~ed~~~~~~v~gLtev~V~S~ee~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~I~v~~~~~- 228 (614)
||+|+|||++.. ++.+++++.++++|.|++++.|.|++|++++|..|.++|++++|.+|..|||||+||+|++.+.+.
T Consensus 164 nE~i~DLL~~~~-~l~ire~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~ 242 (355)
T 3lre_A 164 NEQIRDLLVNSG-PLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKT 242 (355)
T ss_dssp TTEEEESSSCCC-CBEEEECTTSCEEEETCCCBCCCSHHHHHHHHHHHHHTSCBC-----CBCTTCEEEEEEEEEEEETT
T ss_pred CCEEEECcCCCC-CceeEEcCCCCEEeeeeeEEecCCHHHHHHHHHHHHhcCCcccccCcCCCCCCcEEEEEEEEEecCC
Confidence 999999998754 699999999999999999999999999999999999999999999999999999999999988643
Q ss_pred -----ccccceeEEEeCCCccccccccCccchhhhhHHhhhhHHHHHHHHHHHhcCC---CCccCCCChhhhhhhhccCC
Q 035971 229 -----FLPTGKMNFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANE---SHVPYRESKLTRMLQESLGC 300 (614)
Q Consensus 229 -----~~~~skL~fVDLAGsEr~~k~~~~g~~l~E~~~INkSL~aL~~vI~aL~~~~---~~vPyRdSkLTrLLqdsLgG 300 (614)
....|+|+|||||||||..++++.|.+++|+..||+||++|++||.+|++++ .||||||||||+||||+|||
T Consensus 243 ~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lL~dsLgG 322 (355)
T 3lre_A 243 ASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKLTRLLKDSLGG 322 (355)
T ss_dssp SCTTCCCCCEEEEEEECCCCCC-----------------CHHHHHHHHHHHHHC--------CCGGGSHHHHHTTTTSST
T ss_pred CCCCCCEEEEEEEEEECCCCCcCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCcccCHHHHHHHHhcCC
Confidence 2457999999999999999999999999999999999999999999998753 59999999999999999999
Q ss_pred CceEEEEEEcCcC------chhHHHHHHhHhhhh
Q 035971 301 KSKILMLTCLLPR------SVSTTKTQTGSQMHS 328 (614)
Q Consensus 301 nskt~mI~~vsP~------Tl~TL~~asr~~r~i 328 (614)
||+|+||+||||+ |++||+||+|+ +.|
T Consensus 323 nskt~mIa~isP~~~~~~ETl~TL~fA~ra-k~I 355 (355)
T 3lre_A 323 NCQTIMIAAVSPSSVFYDDTYNTLKYANRA-KDI 355 (355)
T ss_dssp TSEEEEEEEECCBGGGHHHHHHHHHHHHHT-C--
T ss_pred CceEEEEEEeCCchhhHHHHHHHHHHHHHh-ccC
Confidence 9999999999999 99999999999 654
No 11
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=100.00 E-value=5.7e-79 Score=642.98 Aligned_cols=309 Identities=30% Similarity=0.475 Sum_probs=266.5
Q ss_pred CCCCeEEEEEeCCCCChhhcc---CCcEEEeCCCCCCCCeEEEEeCCCCCCCceeeEeeeeecCCCChHHHHhhhhHHHH
Q 035971 12 ISKKARVIAKIRGFADLEAES---ANWVCIQKPNGEDSDSVTVSFGEQPSSRKECYKLDYCYEQNEGNGIIFAREVKPLI 88 (614)
Q Consensus 12 ~~~~VrV~vRvRP~~~~e~~~---~~~v~v~~~~~~d~~~v~v~~~~~~~~~~~~F~FD~VF~~~asQ~eVf~~~v~plV 88 (614)
.+++|+|+||+||+.+.|... ..++.+... +...+.+. . .+..+.|.||+||+++++|++||+. +.|+|
T Consensus 2 ~~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~---~~~~~~~~--~--~~~~~~f~FD~Vf~~~~~Q~~Vy~~-v~~lv 73 (330)
T 2h58_A 2 SKGNIRVIARVRPVTKEDGEGPEATNAVTFDAD---DDSIIHLL--H--KGKPVSFELDKVFSPQASQQDVFQE-VQALV 73 (330)
T ss_dssp ---CEEEEEEECCCCGGGCSSGGGSBCEEECSS---CTTEEEEE--E--TTEEEEEECSEEECTTCCHHHHHTT-THHHH
T ss_pred CCCCEEEEEEcCCCChhhcccCCCccEEEEeCC---CCcEEEEc--C--CCCeeEEecCeEeCCCCCcHhHHHH-HHHHH
Confidence 579999999999999887643 345666432 22223222 2 2346799999999999999999996 69999
Q ss_pred HHHhcCCceEEEeeccCCCCcceEeecCCCCcchhHHHHHHHHhhccc----cCceEEEEEEEEecceeccccCccc-c-
Q 035971 89 SEVFNGINATIVACGAKGSGKTRVIQGSYEEPGLAALAVDEILSISEK----MGKSITISFYEIFQDHVYDLLDPKQ-Q- 162 (614)
Q Consensus 89 ~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~GLipral~~LF~~~~~----~~~sV~vS~~EIYnE~V~DLL~~~~-~- 162 (614)
+++++|||+||||||||||||||||+|+.+++||+||++++||+.+++ ..+.|++||+|||||+|+|||++.. .
T Consensus 74 ~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~ 153 (330)
T 2h58_A 74 TSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEK 153 (330)
T ss_dssp HHHHTTCCEEEEEESSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSCSSCCC
T ss_pred HHHhCCCEEEEEeECCCCCCCcEEEecCCCCCcHHHHHHHHHHHhhhcccCCceEEEEEEEEEEECCChhhccccccccc
Confidence 999999999999999999999999999999999999999999998863 4689999999999999999998753 2
Q ss_pred -cceEEecCCCceEecCCeEEEcCCHHHHHHHHHHHHhcCcccccccCCCCCCceEEEEEEEeeccC---ccccceeEEE
Q 035971 163 -EVQILENGQGKIQLKGLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVSPVSN---FLPTGKMNFV 238 (614)
Q Consensus 163 -~l~i~ed~~~~~~v~gLtev~V~S~ee~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~I~v~~~~~---~~~~skL~fV 238 (614)
.+.+.+++.++++|.|++++.|.|++|++++|..|.++|++++|.+|..|||||+||+|++.+.+. ....|+|+||
T Consensus 154 l~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lV 233 (330)
T 2h58_A 154 LEIRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLV 233 (330)
T ss_dssp CCCEECTTSSCCEECTTCCCEEECSHHHHHHHHHHHHHHTTCTTCCSCSCGGGSEEEEEEEEEEEETTTTEEEEEEEEEE
T ss_pred ceEEEeecCCCCEecCCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCcCCccEEEEEEEEEEecCCCcEEEEEEEEE
Confidence 345556888999999999999999999999999999999999999999999999999999987654 3457999999
Q ss_pred eCCCccccccccCccchhhhhHHhhhhHHHHHHHHHHHhcCCCCccCCCChhhhhhhhccCCCceEEEEEEcCcC-----
Q 035971 239 DLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANESHVPYRESKLTRMLQESLGCKSKILMLTCLLPR----- 313 (614)
Q Consensus 239 DLAGsEr~~k~~~~g~~l~E~~~INkSL~aL~~vI~aL~~~~~~vPyRdSkLTrLLqdsLgGnskt~mI~~vsP~----- 313 (614)
|||||||..++++.|.+++|+..||+||++|++||.+|+.++.||||||||||+||||+||||++|+||+||||+
T Consensus 234 DLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lL~dsLgGns~t~mI~~isP~~~~~~ 313 (330)
T 2h58_A 234 DLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTS 313 (330)
T ss_dssp ECCCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTHHHHSTTCEEEEEEEECCBGGGHH
T ss_pred eCCCCCcccccCCchhhhHHHHHhhHhHHHHHHHHHHHhcCCCCCcccccHHHHHHHHHhCCCceEEEEEEeCCccccHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -chhHHHHHHhHhhhhh
Q 035971 314 -SVSTTKTQTGSQMHSS 329 (614)
Q Consensus 314 -Tl~TL~~asr~~r~i~ 329 (614)
|++||+||+|+ +.|+
T Consensus 314 ETl~TL~fA~ra-k~i~ 329 (330)
T 2h58_A 314 ETLYSLKFAERV-RSVE 329 (330)
T ss_dssp HHHHHHHHHHHH-C---
T ss_pred HHHHHHHHHHHH-hhCc
Confidence 99999999999 7764
No 12
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=100.00 E-value=5.6e-79 Score=647.78 Aligned_cols=317 Identities=23% Similarity=0.374 Sum_probs=255.1
Q ss_pred CCCCCCeEEEEEeCCCCChhhccCCcEEEeCCCCCCCCeEEEEeCCC-CCCCceeeEeeeeecCCCChHHHHhhhhHHHH
Q 035971 10 LNISKKARVIAKIRGFADLEAESANWVCIQKPNGEDSDSVTVSFGEQ-PSSRKECYKLDYCYEQNEGNGIIFAREVKPLI 88 (614)
Q Consensus 10 ~~~~~~VrV~vRvRP~~~~e~~~~~~v~v~~~~~~d~~~v~v~~~~~-~~~~~~~F~FD~VF~~~asQ~eVf~~~v~plV 88 (614)
|+++|+|||+|||||+.+.|......+.+...++.+ ....+.+... .....+.|.||+||+++++|++||+. +.|+|
T Consensus 1 m~lkgnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~vf~~-v~~lv 78 (349)
T 3t0q_A 1 MALRGNIRVYCRVRPPLLNEPQDMSHILIEKFNEAK-GAQSLTINRNEGRILSYNFQFDMIFEPSHTNKEIFEE-IRQLV 78 (349)
T ss_dssp ----CEEEEEEEECCCCTTSCCCCTTEEECCCBC---CBEEEEEEECC--CEEEEEEESEEECTTCCHHHHHHH-HHHHH
T ss_pred CCCCCCcEEEEEeCCCCccccccCceEEEeeccCCC-CceEEEEcCCCCcccceeeecCEEECCCccHHHHHHH-HHHHH
Confidence 568899999999999999988777777776543322 2223333222 22346789999999999999999996 68999
Q ss_pred HHHhcCCceEEEeeccCCCCcceEeecCCCCcchhHHHHHHHHhhccc-----cCceEEEEEEEEecceeccccCccc--
Q 035971 89 SEVFNGINATIVACGAKGSGKTRVIQGSYEEPGLAALAVDEILSISEK-----MGKSITISFYEIFQDHVYDLLDPKQ-- 161 (614)
Q Consensus 89 ~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~GLipral~~LF~~~~~-----~~~sV~vS~~EIYnE~V~DLL~~~~-- 161 (614)
+++++|||+||||||||||||||||+|+ ++|||||++++||+.++. +.+.|.+||+|||||+|+|||++..
T Consensus 79 ~~~l~G~n~tifAYGqTGSGKTyTm~g~--~~Giipr~~~~lF~~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~ 156 (349)
T 3t0q_A 79 QSSLDGYNVCIFAYGQTGSGKTYTMLNA--GDGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSH 156 (349)
T ss_dssp HGGGTTCEEEEEEECSTTSSHHHHHHST--TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTC-----
T ss_pred HHHHCCcceeEEEeCCCCCCCceEeCCC--CCchhhHHHHHHHHHHHHhhhcCceeEEEEEEEEEEcchhhccccccccc
Confidence 9999999999999999999999999996 569999999999997763 4678999999999999999998643
Q ss_pred ---------ccceEEecC-CCceEecCCeEEEcCCHHHHHHHHHHHHhcCcccccccCCCCCCceEEEEEEEeeccC---
Q 035971 162 ---------QEVQILENG-QGKIQLKGLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVSPVSN--- 228 (614)
Q Consensus 162 ---------~~l~i~ed~-~~~~~v~gLtev~V~S~ee~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~I~v~~~~~--- 228 (614)
..+.+++++ .++++|.|++++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|++.+.+.
T Consensus 157 ~~~~~~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~ 236 (349)
T 3t0q_A 157 DNIDEILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHTG 236 (349)
T ss_dssp ----------CCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHC------------CTGGGSEEEEEEEEEEEETTTC
T ss_pred cccccccccccceeEEecCCCCEEEeCCEEEEeCCHHHHHHHHHHHHHhCcccccccccccCCcceEEEEEEEEEecCCC
Confidence 456777765 5679999999999999999999999999999999999999999999999999987654
Q ss_pred ccccceeEEEeCCCccccccccCccchhhhhHHhhhhHHHHHHHHHHHhcCC---CCccCCCChhhhhhhhccCCCceEE
Q 035971 229 FLPTGKMNFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANE---SHVPYRESKLTRMLQESLGCKSKIL 305 (614)
Q Consensus 229 ~~~~skL~fVDLAGsEr~~k~~~~g~~l~E~~~INkSL~aL~~vI~aL~~~~---~~vPyRdSkLTrLLqdsLgGnskt~ 305 (614)
....|+|+|||||||||..++++.|.+++|+..||+||++|++||.+|+.++ .||||||||||+||||+||||++|+
T Consensus 237 ~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~ 316 (349)
T 3t0q_A 237 ETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLVGDSKTL 316 (349)
T ss_dssp CEEEEEEEEEECCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCCCGGGSHHHHHHGGGSSTTCEEE
T ss_pred CeeEEEEEEEeCCCCCccccccCccccchhHHhhhHhHHHHHHHHHHHhcccCCCCcCCCcCCHHHHHHHHhcCCCceEE
Confidence 3457899999999999999999999999999999999999999999998765 4999999999999999999999999
Q ss_pred EEEEcCcC------chhHHHHHHhHhhhhhcC
Q 035971 306 MLTCLLPR------SVSTTKTQTGSQMHSSTK 331 (614)
Q Consensus 306 mI~~vsP~------Tl~TL~~asr~~r~i~nk 331 (614)
||+||||+ |++||+||+|+ +.++..
T Consensus 317 mi~~vsP~~~~~~ETl~TL~fA~rv-~~ik~~ 347 (349)
T 3t0q_A 317 MFVNIPPDPNHISETLNSLRFASKV-NSTKIA 347 (349)
T ss_dssp EEEEECCCGGGHHHHHHHHHHHHHH-HC----
T ss_pred EEEEeCCchhhHHHHHHHHHHHHHh-hhcccC
Confidence 99999999 99999999999 877754
No 13
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=100.00 E-value=1.1e-79 Score=655.17 Aligned_cols=320 Identities=27% Similarity=0.428 Sum_probs=266.6
Q ss_pred CCCCCeEEEEEeCCCCChhhcc--CCcEEEeCCCCCCCCeEEEEeCCC-CCCCceeeEeeeeecCCCChHHHHhhhhHHH
Q 035971 11 NISKKARVIAKIRGFADLEAES--ANWVCIQKPNGEDSDSVTVSFGEQ-PSSRKECYKLDYCYEQNEGNGIIFAREVKPL 87 (614)
Q Consensus 11 ~~~~~VrV~vRvRP~~~~e~~~--~~~v~v~~~~~~d~~~v~v~~~~~-~~~~~~~F~FD~VF~~~asQ~eVf~~~v~pl 87 (614)
+..++|+|+||+||+...|... ..++.+.. ....+.+..+.. .....+.|.||+||+++++|++||+.++.|+
T Consensus 5 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~----~~~~v~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~pl 80 (359)
T 1x88_A 5 EKGKNIQVVVRCRPFNLAERKASAHSIVECDP----VRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPI 80 (359)
T ss_dssp ----CCEEEEEECCCCHHHHHTTCCCCEEEET----TTTEEEEEEEEETTEEEEEEEECSEEECTTCCHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCChhhhhcCCceEEEEcC----CCcEEEEeCCCccCCcCceEEeceEEEeccCchhHHHHHHHHHh
Confidence 3468999999999999888665 33455542 233455543211 1224578999999999999999999999999
Q ss_pred HHHHhcCCceEEEeeccCCCCcceEeecCCC-----------CcchhHHHHHHHHhhccc--cCceEEEEEEEEecceec
Q 035971 88 ISEVFNGINATIVACGAKGSGKTRVIQGSYE-----------EPGLAALAVDEILSISEK--MGKSITISFYEIFQDHVY 154 (614)
Q Consensus 88 V~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~-----------~~GLipral~~LF~~~~~--~~~sV~vS~~EIYnE~V~ 154 (614)
|+++|+|||+||||||||||||||||+|+.. .+|||||++++||+.+.+ ..+.|+|||+|||||+|+
T Consensus 81 v~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~v~vS~~EIYnE~i~ 160 (359)
T 1x88_A 81 LDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELF 160 (359)
T ss_dssp HHHHHTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSSSSEEEEEEEEEEEEETTEEE
T ss_pred HHHHhCCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHHHHHHHHHhccCceEEEEEEEEEEeCceee
Confidence 9999999999999999999999999999753 369999999999999874 567899999999999999
Q ss_pred cccCccc---ccceEEecCC--CceEecCCeEEEcCCHHHHHHHHHHHHhcCcccccccCCCCCCceEEEEEEEeeccC-
Q 035971 155 DLLDPKQ---QEVQILENGQ--GKIQLKGLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVSPVSN- 228 (614)
Q Consensus 155 DLL~~~~---~~l~i~ed~~--~~~~v~gLtev~V~S~ee~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~I~v~~~~~- 228 (614)
|||++.. ..+.+++++. ++++|.||+++.|.|++|++++|..|..+|++++|.+|..|||||+||+|+|.....
T Consensus 161 DLL~~~~~~~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~ 240 (359)
T 1x88_A 161 DLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETT 240 (359)
T ss_dssp ETTCTTSCTTCCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEEEEEEC
T ss_pred ehhcccccccccceEEeccCCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCccEEEEEEEEEeccc
Confidence 9998864 4689999874 789999999999999999999999999999999999999999999999999976432
Q ss_pred -----ccccceeEEEeCCCccccccccCccchhhhhHHhhhhHHHHHHHHHHHhcCCCCccCCCChhhhhhhhccCCCce
Q 035971 229 -----FLPTGKMNFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANESHVPYRESKLTRMLQESLGCKSK 303 (614)
Q Consensus 229 -----~~~~skL~fVDLAGsEr~~k~~~~g~~l~E~~~INkSL~aL~~vI~aL~~~~~~vPyRdSkLTrLLqdsLgGnsk 303 (614)
....|+|+|||||||||..++++.|.+++|+..||+||++|++||.+|+.+..||||||||||+||||+||||++
T Consensus 241 ~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnsk 320 (359)
T 1x88_A 241 IDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTR 320 (359)
T ss_dssp TTSCEEEEEEEEEEEECCCCCC---------------CCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTGGGSSSSSE
T ss_pred CCCCceEEEEEEEEEcCCCCCcccccCCcccchHHHhhhhHHHHHHHHHHHHHhcCCCCCccccchHHHHHHHHhCCCCe
Confidence 235799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcCcC------chhHHHHHHhHhhhhhcCCCcc
Q 035971 304 ILMLTCLLPR------SVSTTKTQTGSQMHSSTKKATG 335 (614)
Q Consensus 304 t~mI~~vsP~------Tl~TL~~asr~~r~i~nk~~~~ 335 (614)
|+||+||||+ |++||+||+|+ +.|+|++..|
T Consensus 321 t~mIa~vsP~~~~~~ETl~TLrfA~ra-k~I~n~p~vn 357 (359)
T 1x88_A 321 TSIIATISPASLNLEETLSTLEYAHRA-KNILNKPEVN 357 (359)
T ss_dssp EEEEEEECCCGGGHHHHHHHHHHHHHH-TTCCCCCC--
T ss_pred EEEEEEECCCcccHHHHHHHHHHHHHH-hhccCcceeC
Confidence 9999999999 99999999999 9999998755
No 14
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=100.00 E-value=2.6e-79 Score=653.81 Aligned_cols=316 Identities=24% Similarity=0.397 Sum_probs=265.5
Q ss_pred CCCeEEEEEeCCCCChhhccC-Cc-EEEeCCCCCCCCeEEEEeCCCCCCCceeeEeeeeecCC--------CChHHHHhh
Q 035971 13 SKKARVIAKIRGFADLEAESA-NW-VCIQKPNGEDSDSVTVSFGEQPSSRKECYKLDYCYEQN--------EGNGIIFAR 82 (614)
Q Consensus 13 ~~~VrV~vRvRP~~~~e~~~~-~~-v~v~~~~~~d~~~v~v~~~~~~~~~~~~F~FD~VF~~~--------asQ~eVf~~ 82 (614)
.++|||+||+||+.+.|...+ .| +.+.. ..+.+..+.......+.|.||+||+++ ++|++||+.
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~------~~~~i~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~ 76 (366)
T 2zfi_A 3 GASVKVAVRVRPFNSREMSRDSKCIIQMSG------STTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRD 76 (366)
T ss_dssp -CCEEEEEEECCCCHHHHHTTCCBCEEEET------TEEEECCTTCTTSCCEEEECSEEEECSSCTTSSSCCCHHHHHHH
T ss_pred CCCcEEEEECCCCChhhccCCCCeEEEECC------CcEEEeccCCCCCCceEEecceEeecCccccccccCcHHHHHHH
Confidence 368999999999998886542 33 33431 233333232233457899999999987 899999999
Q ss_pred hhHHHHHHHhcCCceEEEeeccCCCCcceEeecCC--CCcchhHHHHHHHHhhccc-----cCceEEEEEEEEecceecc
Q 035971 83 EVKPLISEVFNGINATIVACGAKGSGKTRVIQGSY--EEPGLAALAVDEILSISEK-----MGKSITISFYEIFQDHVYD 155 (614)
Q Consensus 83 ~v~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~--~~~GLipral~~LF~~~~~-----~~~sV~vS~~EIYnE~V~D 155 (614)
+++|+|+++|+|||+||||||||||||||||+|+. +++|||||++++||+.+++ ..+.|++||+|||||+|+|
T Consensus 77 ~~~plv~~~l~G~N~tifAYGqTGSGKTyTm~G~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~v~D 156 (366)
T 2zfi_A 77 IGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRD 156 (366)
T ss_dssp THHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBCSGGGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETTEEEE
T ss_pred HHHHHHHHHhcCCeeEEEEeCCCCCCCceEeeCCCccCCCccHHHHHHHHHHHHhhcccCCeeEEEEEEEEEeeCCeEEE
Confidence 99999999999999999999999999999999984 5789999999999998863 4578999999999999999
Q ss_pred ccCccc-ccceEEecCCCceEecCCeEEEcCCHHHHHHHHHHHHhcCcccccccCCCCCCceEEEEEEEeeccC------
Q 035971 156 LLDPKQ-QEVQILENGQGKIQLKGLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVSPVSN------ 228 (614)
Q Consensus 156 LL~~~~-~~l~i~ed~~~~~~v~gLtev~V~S~ee~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~I~v~~~~~------ 228 (614)
||++.. ..+.+++++.++++|+||+++.|.|++|++++|..|.++|++++|.+|..|||||+||+|+|.+...
T Consensus 157 LL~~~~~~~l~ire~~~~g~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~ 236 (366)
T 2zfi_A 157 LLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNI 236 (366)
T ss_dssp TTCTTTCSCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECTTTTC
T ss_pred ccccccCCCceEEEcCCCCEEEeCCEEEEECCHHHHHHHHHHHhhccccccccCCCCCCcceEEEEEEEEEecccCCCCc
Confidence 999864 5799999999999999999999999999999999999999999999999999999999999986532
Q ss_pred -ccccceeEEEeCCCccccccccCccchhhhhHHhhhhHHHHHHHHHHHhc------------CCCCccCCCChhhhhhh
Q 035971 229 -FLPTGKMNFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNA------------NESHVPYRESKLTRMLQ 295 (614)
Q Consensus 229 -~~~~skL~fVDLAGsEr~~k~~~~g~~l~E~~~INkSL~aL~~vI~aL~~------------~~~~vPyRdSkLTrLLq 295 (614)
....|+|+|||||||||..++++.|.+++|+..||+||++|++||.+|++ +..||||||||||+|||
T Consensus 237 ~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~~hvPyRdSkLT~lLq 316 (366)
T 2zfi_A 237 TTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLR 316 (366)
T ss_dssp EEEEEEEEEEEECCCGGGC------CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCGGGSHHHHHTG
T ss_pred cceeEeEEEEEeCCCCccccccCCCccchhhhhhHhHHHHHHHHHHHHHHhcccccccccccccCCcccccccHHHHHHH
Confidence 13469999999999999999999999999999999999999999999976 35799999999999999
Q ss_pred hccCCCceEEEEEEcCcC------chhHHHHHHhHhhhhhcCCCcc
Q 035971 296 ESLGCKSKILMLTCLLPR------SVSTTKTQTGSQMHSSTKKATG 335 (614)
Q Consensus 296 dsLgGnskt~mI~~vsP~------Tl~TL~~asr~~r~i~nk~~~~ 335 (614)
|+||||++|+||+||||+ |++||+||+|+ +.|+|++..+
T Consensus 317 dsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~ra-k~I~~~~~~~ 361 (366)
T 2zfi_A 317 ENLGGNSRTAMVAALSPADINYDETLSTLRYADRA-KQIRNTVSVN 361 (366)
T ss_dssp GGSSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHT-C---------
T ss_pred HHhCCCceEEEEEEeCCCcccHHHHHHHHHHHHHH-hhccCCCCCC
Confidence 999999999999999999 99999999999 9999987644
No 15
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=100.00 E-value=2.7e-79 Score=654.83 Aligned_cols=321 Identities=28% Similarity=0.448 Sum_probs=267.2
Q ss_pred CCCCCCeEEEEEeCCCCChhhcc--CCcEEEeCCCCCCCCeEEEEeCCCCCCCceeeEeeeeecCCCChHHHHhhhhHHH
Q 035971 10 LNISKKARVIAKIRGFADLEAES--ANWVCIQKPNGEDSDSVTVSFGEQPSSRKECYKLDYCYEQNEGNGIIFAREVKPL 87 (614)
Q Consensus 10 ~~~~~~VrV~vRvRP~~~~e~~~--~~~v~v~~~~~~d~~~v~v~~~~~~~~~~~~F~FD~VF~~~asQ~eVf~~~v~pl 87 (614)
....++|+|+||+||+.+.|... ..++.+.. ...+.+. ........+.|.||+||+++++|++||+.+++|+
T Consensus 19 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~-----~~~~~~~-~~~~~~~~~~F~FD~vf~~~~~Q~~Vy~~~~~pl 92 (373)
T 2wbe_C 19 KKSNQNIQVYVRVRPLNSRERCIRSAEVVDVVG-----PREVVTR-HTLDSKLTKKFTFDRSFGPESKQCDVYSVVVSPL 92 (373)
T ss_dssp CCCCEECEEEEEECCCCHHHHHHTCCBCEEEET-----TTEEEES-SSSSSTTCEEEECSEEECTTCCHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEcCCCChhhhccCCCceEEEcC-----CCeEEEe-cCCCCCCceEEeccEEeccccchhHHHHHHHHHH
Confidence 34568999999999999888653 44565543 2233332 1222345689999999999999999999999999
Q ss_pred HHHHhcCCceEEEeeccCCCCcceEeecCCC-----------CcchhHHHHHHHHhhcc--ccCceEEEEEEEEecceec
Q 035971 88 ISEVFNGINATIVACGAKGSGKTRVIQGSYE-----------EPGLAALAVDEILSISE--KMGKSITISFYEIFQDHVY 154 (614)
Q Consensus 88 V~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~-----------~~GLipral~~LF~~~~--~~~~sV~vS~~EIYnE~V~ 154 (614)
|+++|+|||+||||||||||||||||+|+.. ++|||||++++||+.+. +..+.|++||+|||||+|+
T Consensus 93 v~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~v~vS~~EIYnE~i~ 172 (373)
T 2wbe_C 93 IEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRMMEVEYTMRISYLELYNEELC 172 (373)
T ss_dssp HHHHHHTCCEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEETTEEE
T ss_pred HHHHhCCceEEEEeecCCCCCcceecccCccccccccccccCCCcChHHHHHHHHHHHHhcCceEEEEEEEEEEeCCeEE
Confidence 9999999999999999999999999999753 68999999999999886 4678999999999999999
Q ss_pred cccCccc-ccceEEecC--CCceEecCCeEEEcCCHHHHHHHHHHHHhcCcccccccCCCCCCceEEEEEEEeeccC---
Q 035971 155 DLLDPKQ-QEVQILENG--QGKIQLKGLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVSPVSN--- 228 (614)
Q Consensus 155 DLL~~~~-~~l~i~ed~--~~~~~v~gLtev~V~S~ee~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~I~v~~~~~--- 228 (614)
|||++.. ..+.+++++ .++++|.||+++.|.+++|++++|..|..+|++++|.+|..|||||+||+|+|.....
T Consensus 173 DLL~~~~~~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~ 252 (373)
T 2wbe_C 173 DLLSTDDTTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIE 252 (373)
T ss_dssp ESSCTTSCSCCCEEECSSSSSCEEETTCCCEEESSHHHHHHHHHHHHHHHTTTCSCHHHHHHHSEEEEEEEEEECTTCTT
T ss_pred ECCCCCCCCCceeEeccCCCCcEEecCceEEccCCHHHHHHHHHHHhhhhccccccCCCCCCCccEEEEEEEEEecCCCC
Confidence 9998764 468888874 5789999999999999999999999999999999999999999999999999987543
Q ss_pred ---ccccceeEEEeCCCccccccccCc-cchhhhhHHhhhhHHHHHHHHHHHhcCCCCccCCCChhhhhhhhccCCCceE
Q 035971 229 ---FLPTGKMNFVDLAGYQDIRRKSTE-GSIFVENTKVNKSIYTLFNVVYALNANESHVPYRESKLTRMLQESLGCKSKI 304 (614)
Q Consensus 229 ---~~~~skL~fVDLAGsEr~~k~~~~-g~~l~E~~~INkSL~aL~~vI~aL~~~~~~vPyRdSkLTrLLqdsLgGnskt 304 (614)
....|+|+|||||||||..++++. |.+++|+..||+||++|++||.+|+++..||||||||||+||||+||||++|
T Consensus 253 ~~~~~~~skL~lVDLAGSEr~~~t~~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt 332 (373)
T 2wbe_C 253 GEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPHVPYRESKLTRLLQESLGGRTKT 332 (373)
T ss_dssp TCCEEEEEEEEEEECCCC--------------------CHHHHHHHHHHHHHHHCSSCCCGGGCHHHHHTHHHHHSSSEE
T ss_pred CCcceeEEEEEEEECCCCCccccccCccccchhHHHHHHHHHHHHHHHHHHHHcCCCcCccccchHHHHHHHHhCCCceE
Confidence 134699999999999999999887 9999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCcC------chhHHHHHHhHhhhhhcCCCcccc
Q 035971 305 LMLTCLLPR------SVSTTKTQTGSQMHSSTKKATGVA 337 (614)
Q Consensus 305 ~mI~~vsP~------Tl~TL~~asr~~r~i~nk~~~~~~ 337 (614)
+||+||||+ |++||+||+|+ +.|+|++..|..
T Consensus 333 ~mIa~isP~~~~~~ETlsTLrfA~ra-k~I~n~p~vN~~ 370 (373)
T 2wbe_C 333 SIIATISPGHKDIEETLSTLEYAHRA-KNIQNKPEVNQK 370 (373)
T ss_dssp EEEEEECCBGGGHHHHHHHHHHHHHH-HTCEECCCCCEE
T ss_pred EEEEEeCCCcccHHHHHHHHHHHHHH-hhccccceeccc
Confidence 999999998 99999999999 999999986653
No 16
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=100.00 E-value=1.5e-78 Score=643.81 Aligned_cols=316 Identities=24% Similarity=0.364 Sum_probs=261.7
Q ss_pred CCCCeEEEEEeCCCCC-hhhccCCcEEEeCCCCCCC-CeEEEEeCCCCCCCceeeEeeeeecCCCChHHHHhhhhHHHHH
Q 035971 12 ISKKARVIAKIRGFAD-LEAESANWVCIQKPNGEDS-DSVTVSFGEQPSSRKECYKLDYCYEQNEGNGIIFAREVKPLIS 89 (614)
Q Consensus 12 ~~~~VrV~vRvRP~~~-~e~~~~~~v~v~~~~~~d~-~~v~v~~~~~~~~~~~~F~FD~VF~~~asQ~eVf~~~v~plV~ 89 (614)
++|+|||+||+||+.+ .|.....++.+...+..+. ..+.+.-. ......+.|.||+||+++++|++||+. +.|+|+
T Consensus 1 lk~nIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~-v~~lv~ 78 (347)
T 1f9v_A 1 MRGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKI-QNTAQVHEFKFDKIFDQQDTNVDVFKE-VGQLVQ 78 (347)
T ss_dssp --CEEEEEEEECCCCTTTCCCTTEEEEECCCBTTTTBEEEEEEEG-GGTTCEEEEEESEEECTTCCHHHHHHH-HHHHHG
T ss_pred CCCCeEEEEEeCCCCcccccCCCceEEEecccCCCCceEEEEecC-CCCcCceEEeeCEEECCCCCHHHHHHH-HHHHHH
Confidence 4789999999999987 4444455666654322211 23344322 223456899999999999999999996 679999
Q ss_pred HHhcCCceEEEeeccCCCCcceEeecCCCCcchhHHHHHHHHhhccc-----cCceEEEEEEEEecceeccccCcccc--
Q 035971 90 EVFNGINATIVACGAKGSGKTRVIQGSYEEPGLAALAVDEILSISEK-----MGKSITISFYEIFQDHVYDLLDPKQQ-- 162 (614)
Q Consensus 90 ~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~GLipral~~LF~~~~~-----~~~sV~vS~~EIYnE~V~DLL~~~~~-- 162 (614)
++|+|||+||||||||||||||||+|+ ++|||||++++||+.+++ +.+.|++||+|||||+|+|||++...
T Consensus 79 ~~l~G~n~tifAYGqTGSGKTyTM~G~--~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~ 156 (347)
T 1f9v_A 79 SSLDGYNVCIFAYGQTGSGKTFTMLNP--GDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNK 156 (347)
T ss_dssp GGGGTCCEEEEEECCTTSSHHHHHHST--TTSHHHHHHHHHHHHHHHHGGGTCEEEEEEEEEEEETTEEEETTC------
T ss_pred HhcCCceeEEEEECCCCCCCcEeccCC--CCCchHHHHHHHHHHHHhhhhcCCceEEEEEEEEEECCeeeeccCCccccc
Confidence 999999999999999999999999995 579999999999998763 46899999999999999999987643
Q ss_pred -------cceEEec-CCCceEecCCeEEEcCCHHHHHHHHHHHHhcCcccccccCCCCCCceEEEEEEEeeccC---ccc
Q 035971 163 -------EVQILEN-GQGKIQLKGLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVSPVSN---FLP 231 (614)
Q Consensus 163 -------~l~i~ed-~~~~~~v~gLtev~V~S~ee~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~I~v~~~~~---~~~ 231 (614)
.+.++++ ..++++|.|++++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|++.+.+. ...
T Consensus 157 ~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~ 236 (347)
T 1f9v_A 157 EDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKTGAHS 236 (347)
T ss_dssp -------CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHHHC-----------CCGGGSEEEEEEEEEEECC--CCEE
T ss_pred cccccCCceeEEEecCCCceEecCCEEEEcCCHHHHHHHHHHHHhccceeeccCCCCCCCceEEEEEEEEEecCCCCcee
Confidence 4667766 46789999999999999999999999999999999999999999999999999987654 345
Q ss_pred cceeEEEeCCCccccccccCccchhhhhHHhhhhHHHHHHHHHHHhcCC---CCccCCCChhhhhhhhccCCCceEEEEE
Q 035971 232 TGKMNFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANE---SHVPYRESKLTRMLQESLGCKSKILMLT 308 (614)
Q Consensus 232 ~skL~fVDLAGsEr~~k~~~~g~~l~E~~~INkSL~aL~~vI~aL~~~~---~~vPyRdSkLTrLLqdsLgGnskt~mI~ 308 (614)
.|+|+|||||||||..++++.|.+++|+..||+||++|++||.+|+.++ .||||||||||+||||+||||++|+||+
T Consensus 237 ~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~mI~ 316 (347)
T 1f9v_A 237 YGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFV 316 (347)
T ss_dssp EEEEEEEECCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTSCC---CCCCGGGSHHHHHHHHHHSTTCEEEEEE
T ss_pred eeEEEEEECCCCccccccccchhhhHHHHHHhHHHHHHHHHHHHHhcccCCCCcCccccCHHHHHHHHHhCCCccEEEEE
Confidence 7899999999999999999999999999999999999999999998876 8999999999999999999999999999
Q ss_pred EcCcC------chhHHHHHHhHhhhhhcCC
Q 035971 309 CLLPR------SVSTTKTQTGSQMHSSTKK 332 (614)
Q Consensus 309 ~vsP~------Tl~TL~~asr~~r~i~nk~ 332 (614)
||||+ |++||+||+|+ +.++..+
T Consensus 317 ~vsP~~~~~~ETl~TLrfA~r~-~~i~~~~ 345 (347)
T 1f9v_A 317 NISPSSSHINETLNSLRFASKV-NSTRLVS 345 (347)
T ss_dssp EECCSGGGHHHHHHHHHHHHHH-CCTTTC-
T ss_pred EeCCccccHHHHHHHHHHHHHH-hhhccCC
Confidence 99999 99999999999 8888754
No 17
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=100.00 E-value=6.4e-78 Score=638.80 Aligned_cols=302 Identities=27% Similarity=0.479 Sum_probs=253.7
Q ss_pred CCCCeEEEEEeCCCCChhhcc--CCcEEEeCCCCCCCCeEEEEeCCCCCCCceeeEeeeeecCCCChHHHHhhhhHHHHH
Q 035971 12 ISKKARVIAKIRGFADLEAES--ANWVCIQKPNGEDSDSVTVSFGEQPSSRKECYKLDYCYEQNEGNGIIFAREVKPLIS 89 (614)
Q Consensus 12 ~~~~VrV~vRvRP~~~~e~~~--~~~v~v~~~~~~d~~~v~v~~~~~~~~~~~~F~FD~VF~~~asQ~eVf~~~v~plV~ 89 (614)
..++|||+||+||+.+.|... ..|+.+... .. .+.++ ..+.|.||+||+++++|++||+.++.|+|+
T Consensus 9 ~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~----~~--~~~~~-----~~~~f~FD~Vf~~~~~Q~~vy~~~~~plv~ 77 (344)
T 4a14_A 9 EEAPVRVALRVRPLLPKELLHGHQSCLQVEPG----LG--RVTLG-----RDRHFGFHVVLAEDAGQEAVYQACVQPLLE 77 (344)
T ss_dssp CCCCCEEEEEECCCCHHHHHTTCCBCEEEEGG----GT--EEEET-----TTEEEECSEEECTTCCHHHHHHHHTHHHHH
T ss_pred cccceEEEEEecccchHHHhccCeeEEEEcCC----Cc--eEEec-----ccceEEEEEEEecCcchhHHHHHHHHHHHH
Confidence 468999999999999988654 557776532 22 33332 357899999999999999999999999999
Q ss_pred HHhcCCceEEEeeccCCCCcceEeecC------CCCcchhHHHHHHHHhhccc---cCceEEEEEEEEecceeccccCcc
Q 035971 90 EVFNGINATIVACGAKGSGKTRVIQGS------YEEPGLAALAVDEILSISEK---MGKSITISFYEIFQDHVYDLLDPK 160 (614)
Q Consensus 90 ~vl~G~N~tI~aYGqTGSGKTyTm~G~------~~~~GLipral~~LF~~~~~---~~~sV~vS~~EIYnE~V~DLL~~~ 160 (614)
++|+|||+||||||||||||||||+|+ .+++|||||++++||+.+++ ..+.|+|||+|||||+|+|||++.
T Consensus 78 ~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~ 157 (344)
T 4a14_A 78 AFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVG 157 (344)
T ss_dssp HHHTTCCEEEEEESSTTSSHHHHHCC--------CCCCHHHHHHHHHHHHHHHCTTSEEEEEEEEEEEETTEEEETTSSC
T ss_pred HHHhhcCeeEEEecccCCCceEeecccchhhhhhcccCCchHHHHHHHHhcccccceeeEEEEehhhhhHHHHHHHHHhc
Confidence 999999999999999999999999997 36799999999999998874 467899999999999999999854
Q ss_pred --cccceEEecCCCceEecCCeEEEcCCHHHHHHHHHHHHhcCcccccccCCCCCCceEEEEEEEeeccC----------
Q 035971 161 --QQEVQILENGQGKIQLKGLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVSPVSN---------- 228 (614)
Q Consensus 161 --~~~l~i~ed~~~~~~v~gLtev~V~S~ee~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~I~v~~~~~---------- 228 (614)
...+.+++++.++++|.|++++.|.+++|++++|..|.++|++++|.+|..|||||+||+|++.+...
T Consensus 158 ~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~ 237 (344)
T 4a14_A 158 TASRDIQLREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAP 237 (344)
T ss_dssp CCGGGCEEEECTTSCEEEESCCCEECCSHHHHHHHHHHHHHHHHC------CCGGGSEEEEEEEEEEEC-----------
T ss_pred cccccceeeeccCCCEEEEeeeeccccCHHHHHHHHHhcchhcccCcchhhhcccccceEEEEEeeeCCCCcccCCCccc
Confidence 46799999999999999999999999999999999999999999999999999999999999987642
Q ss_pred -ccccceeEEEeCCCccccccccCccchhhhhHHhhhhHHHHHHHHHHHhcC---CCCccCCCChhhhhhhhccCCCceE
Q 035971 229 -FLPTGKMNFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNAN---ESHVPYRESKLTRMLQESLGCKSKI 304 (614)
Q Consensus 229 -~~~~skL~fVDLAGsEr~~k~~~~g~~l~E~~~INkSL~aL~~vI~aL~~~---~~~vPyRdSkLTrLLqdsLgGnskt 304 (614)
....|+|+|||||||||..++++.|.+++|+..||+||++|++||.+|+++ ..||||||||||+||||+||||++|
T Consensus 238 ~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt 317 (344)
T 4a14_A 238 GQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRILKDSLGGNAKT 317 (344)
T ss_dssp -CEEEEEEEEEECCCCCCC--------------CCCSHHHHHHHHHHHHTCTTTTTSCCCGGGCHHHHHTTTSSSTTSEE
T ss_pred cceeeeeeeEEecccchhhcccCCchhhhhhheeechhHHhhhhHHHhcCCccccCCCCCcchhhHHHHhHhhcCCCcce
Confidence 234699999999999999999999999999999999999999999999864 4699999999999999999999999
Q ss_pred EEEEEcCcC------chhHHHHHHhH
Q 035971 305 LMLTCLLPR------SVSTTKTQTGS 324 (614)
Q Consensus 305 ~mI~~vsP~------Tl~TL~~asr~ 324 (614)
+||+||||+ |++||+||+|+
T Consensus 318 ~mI~~vsP~~~~~~ETl~TL~fA~rA 343 (344)
T 4a14_A 318 VMIACVSPSSSDFDETLNTLNYASRA 343 (344)
T ss_dssp EEEEEECCBGGGHHHHHHHHHHHHHT
T ss_pred EEEEEeCCCccchhHHhhhhhhhhhc
Confidence 999999998 99999999998
No 18
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=100.00 E-value=4.6e-78 Score=645.14 Aligned_cols=319 Identities=25% Similarity=0.387 Sum_probs=240.8
Q ss_pred CCCCCCCCCCCeEEEEEeCCCCChhhccCC-cEEEeC-CCC--CCCCeEEEEeCCC---------CCCCceeeEeeeeec
Q 035971 5 KADTGLNISKKARVIAKIRGFADLEAESAN-WVCIQK-PNG--EDSDSVTVSFGEQ---------PSSRKECYKLDYCYE 71 (614)
Q Consensus 5 ~~~~~~~~~~~VrV~vRvRP~~~~e~~~~~-~v~v~~-~~~--~d~~~v~v~~~~~---------~~~~~~~F~FD~VF~ 71 (614)
-++..++++++|||+|||||+.+.|...+. ++.+.. +.+ .+...+.+..++. .....+.|.||+||+
T Consensus 13 ~hn~~~~~~~~irV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~ 92 (376)
T 2rep_A 13 GLVPRGSLKGNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSFDRVFP 92 (376)
T ss_dssp ----------CEEEEEEECCCCTTSCCCCGGGSBCCC------CCCCEEECCC-----------------CEEECSEEEC
T ss_pred ccchhhccCCCeEEEEEcCCCChhhcccCCceEEEccCcccccCCCcEEEEecCCccccccccccCCCCceeeeecEEcC
Confidence 467788999999999999999998876532 222211 000 1222333321110 112356899999999
Q ss_pred CCCChHHHHhhhhHHHHHHHhcCCceEEEeeccCCCCcceEeecCC----CCcchhHHHHHHHHhhccc-----cCceEE
Q 035971 72 QNEGNGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQGSY----EEPGLAALAVDEILSISEK-----MGKSIT 142 (614)
Q Consensus 72 ~~asQ~eVf~~~v~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~----~~~GLipral~~LF~~~~~-----~~~sV~ 142 (614)
++++|++||+. +.|+|+++|+|||+||||||||||||||||+|+. +.+|||||++++||+.+++ +.+.|+
T Consensus 93 ~~~~Q~~Vy~~-v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~ 171 (376)
T 2rep_A 93 PGSGQDEVFEE-IAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGWTYSFV 171 (376)
T ss_dssp TTCCHHHHHHH-HHHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCHHHHHHHHHHHHHHHGGGGTEEEEEE
T ss_pred Ccccchhhhhh-HHHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCcHHHHHHHHHHHHHHhhcCCeEEEEE
Confidence 99999999996 6799999999999999999999999999999975 3689999999999998763 468999
Q ss_pred EEEEEEecceeccccCcc-----cccceEEec--CCCceEecCCeEEEcCCHHHHHHHHHHHHhcCcccccccCCCCCCc
Q 035971 143 ISFYEIFQDHVYDLLDPK-----QQEVQILEN--GQGKIQLKGLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRS 215 (614)
Q Consensus 143 vS~~EIYnE~V~DLL~~~-----~~~l~i~ed--~~~~~~v~gLtev~V~S~ee~~~ll~~g~~~R~~~~t~~n~~SSRS 215 (614)
+||+|||||+|+|||++. ...+.++++ +.++++|.|++++.|.+++|++++|..|.++|++++|.+|..||||
T Consensus 172 vS~~EIYnE~i~DLL~~~~~~~~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRS 251 (376)
T 2rep_A 172 ASYVEIYNETVRDLLATGTRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRS 251 (376)
T ss_dssp EEEEEEETTEEEETTCCC--------CCEEEC---CCCEEETTCCCEEECSHHHHHHHHHHHHHHHHHCC-----CGGGS
T ss_pred EEEEEEECCEeeEccccccccccCCCceEEeccCCCCCEEECCcEEEEeCCHHHHHHHHHHHHhhcccccccCCCCCCCc
Confidence 999999999999999875 246888888 6789999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEeeccC---ccccceeEEEeCCCccccccccCcc----chhhhhHHhhhhHHHHHHHHHHHhcCCCCccCCCC
Q 035971 216 HKGLIVNVSPVSN---FLPTGKMNFVDLAGYQDIRRKSTEG----SIFVENTKVNKSIYTLFNVVYALNANESHVPYRES 288 (614)
Q Consensus 216 H~if~I~v~~~~~---~~~~skL~fVDLAGsEr~~k~~~~g----~~l~E~~~INkSL~aL~~vI~aL~~~~~~vPyRdS 288 (614)
|+||+|+|.+... ....|+|+|||||||||..++++.| .+++|+..||+||++|++||.+|++++.|||||||
T Consensus 252 H~Ifti~v~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~~~~~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdS 331 (376)
T 2rep_A 252 HSVFQLQISGEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSNKESHVPYRNS 331 (376)
T ss_dssp EEEEEEEEEEEESSSCCEEEEEEEEEECCCCC------------------------CHHHHHHHHHHHHTTCSCCCGGGS
T ss_pred eEEEEEEEEEEecCCCcEEEeEEEEEECCCCcccccccccCccccchhhHHhHhhHHHHHHHHHHHHHhcCCCccCCcCC
Confidence 9999999987654 3446899999999999999999988 99999999999999999999999999999999999
Q ss_pred hhhhhhhhccCCCceEEEEEEcCcC------chhHHHHHHhH
Q 035971 289 KLTRMLQESLGCKSKILMLTCLLPR------SVSTTKTQTGS 324 (614)
Q Consensus 289 kLTrLLqdsLgGnskt~mI~~vsP~------Tl~TL~~asr~ 324 (614)
|||+||||+||||++|+||+||||+ |++||+||+|+
T Consensus 332 kLT~LLqdsLgGnskT~mIa~isP~~~~~~ETlsTLrfA~Rv 373 (376)
T 2rep_A 332 KLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKV 373 (376)
T ss_dssp HHHHHTGGGTSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999998 99999999998
No 19
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=100.00 E-value=1.7e-77 Score=641.59 Aligned_cols=309 Identities=26% Similarity=0.441 Sum_probs=251.1
Q ss_pred CCCeEEEEEeCCCCChhhccCC--cEEEeCCCCCCCCeEEEEeCCCCC-----CCceeeEeeeeecCCCChHHHHhhhhH
Q 035971 13 SKKARVIAKIRGFADLEAESAN--WVCIQKPNGEDSDSVTVSFGEQPS-----SRKECYKLDYCYEQNEGNGIIFAREVK 85 (614)
Q Consensus 13 ~~~VrV~vRvRP~~~~e~~~~~--~v~v~~~~~~d~~~v~v~~~~~~~-----~~~~~F~FD~VF~~~asQ~eVf~~~v~ 85 (614)
.++|+|+||+||+.+.|...+. ++.+. +...+.+..+.... ...+.|.||+||+++++|++||+.+++
T Consensus 50 ~~~I~V~vRvRP~~~~E~~~~~~~~v~~~-----~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~sQ~~Vy~~~~~ 124 (387)
T 2heh_A 50 EHRICVCVRKRPLNKQELAKKEIDVISIP-----SKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTAR 124 (387)
T ss_dssp CCSEEEEEEECCCCHHHHHTTCCBCEECC-----BSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTH
T ss_pred CCCeEEEEECCCCChHHhccCCceEEEEC-----CCCEEEEeCCCccccccccccccEEeeeEEEecCCCceeehhhhHH
Confidence 7999999999999998876543 44442 22344444322111 124689999999999999999999999
Q ss_pred HHHHHHhcCCceEEEeeccCCCCcceEeecC------CCCcchhHHHHHHHHhhcc-----ccCceEEEEEEEEecceec
Q 035971 86 PLISEVFNGINATIVACGAKGSGKTRVIQGS------YEEPGLAALAVDEILSISE-----KMGKSITISFYEIFQDHVY 154 (614)
Q Consensus 86 plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~------~~~~GLipral~~LF~~~~-----~~~~sV~vS~~EIYnE~V~ 154 (614)
|+|+++|+|||+||||||||||||||||+|+ ...+||+||++++||..++ +..+.|++||+|||||+|+
T Consensus 125 plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~lF~~~~~~~~~~~~~~V~vS~~EIYnE~v~ 204 (387)
T 2heh_A 125 PLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLF 204 (387)
T ss_dssp HHHHHHHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHHHHHHHTSHHHHTTTCEEEEEEEEEETTEEE
T ss_pred HHHHHHhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHHHHHHhhcccccCceEEEEEEEEEecCCeEE
Confidence 9999999999999999999999999999996 3568999999999999876 3578999999999999999
Q ss_pred cccCcccccceEEecCCCceEecCCeEEEcCCHHHHHHHHHHHHhcCcccccccCCCCCCceEEEEEEEeeccCccccce
Q 035971 155 DLLDPKQQEVQILENGQGKIQLKGLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVSPVSNFLPTGK 234 (614)
Q Consensus 155 DLL~~~~~~l~i~ed~~~~~~v~gLtev~V~S~ee~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~I~v~~~~~~~~~sk 234 (614)
|||++.. .+.+++|+.++++|.||+++.|.|++|++++|..|..+|++++|.+|..|||||+||+|.+.+.. ...|+
T Consensus 205 DLL~~~~-~l~i~ed~~~~v~v~gl~~~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~--~~~sk 281 (387)
T 2heh_A 205 DLLNKKA-KLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKG--RMHGK 281 (387)
T ss_dssp ETTTTTE-ECEEEECTTCCEEEETCCCEEESSHHHHHHHHHHHHHHC---------CGGGSEEEEEEEEESSS--SEEEE
T ss_pred ECCCCCc-cceEEEcCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhCCcccCcCcCCcccceEEEEEEEEECC--eeeeE
Confidence 9999864 59999999999999999999999999999999999999999999999999999999999998764 46799
Q ss_pred eEEEeCCCccccccccC-ccchhhhhHHhhhhHHHHHHHHHHHhcCCCCccCCCChhhhhhhhc-cCCCceEEEEEEcCc
Q 035971 235 MNFVDLAGYQDIRRKST-EGSIFVENTKVNKSIYTLFNVVYALNANESHVPYRESKLTRMLQES-LGCKSKILMLTCLLP 312 (614)
Q Consensus 235 L~fVDLAGsEr~~k~~~-~g~~l~E~~~INkSL~aL~~vI~aL~~~~~~vPyRdSkLTrLLqds-LgGnskt~mI~~vsP 312 (614)
|+|||||||||..+++. .+.+++|+..||+||++|++||.+|+.++.||||||||||+||||+ |||||+|+||+||||
T Consensus 282 L~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hvPYRdSKLTrlLqdsllGgnskT~mIa~isP 361 (387)
T 2heh_A 282 FSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIATISP 361 (387)
T ss_dssp EEEEECCCCC---------------CHHHHHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTGGGGSSTTEEEEEEEEECC
T ss_pred EEEEECCCCccccccccccccchhhHHHHhHHHHHHHHHHHHHhcCCCCCCccccHHHHHHhhhccCCCCeEEEEEEeCC
Confidence 99999999999988764 5678889999999999999999999999999999999999999999 599999999999999
Q ss_pred C------chhHHHHHHhHhhhhhc
Q 035971 313 R------SVSTTKTQTGSQMHSST 330 (614)
Q Consensus 313 ~------Tl~TL~~asr~~r~i~n 330 (614)
+ |++||+||+|+ +.|++
T Consensus 362 ~~~~~~ETlsTLrfA~ra-k~I~~ 384 (387)
T 2heh_A 362 GISSCEYTLNTLRYADRV-KELSP 384 (387)
T ss_dssp BGGGHHHHHHHHHHHHHH-CC---
T ss_pred ccchHHHHHHHHHHHHHh-ccCcC
Confidence 8 99999999999 88875
No 20
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=100.00 E-value=1.6e-77 Score=638.07 Aligned_cols=318 Identities=25% Similarity=0.419 Sum_probs=265.5
Q ss_pred CeEEEEEeCCCCChhhcc--CCcEEEeCCCCCCCCeEEEEeCCCCC-----CCceeeEeeeeecCCCChHHHHhhhhHHH
Q 035971 15 KARVIAKIRGFADLEAES--ANWVCIQKPNGEDSDSVTVSFGEQPS-----SRKECYKLDYCYEQNEGNGIIFAREVKPL 87 (614)
Q Consensus 15 ~VrV~vRvRP~~~~e~~~--~~~v~v~~~~~~d~~~v~v~~~~~~~-----~~~~~F~FD~VF~~~asQ~eVf~~~v~pl 87 (614)
+|||+||+||+.+.|... ..++.+.. ...+.+.-+.... ...+.|.||+||+++++|++||+.+++|+
T Consensus 1 ~IrV~vRvRP~~~~E~~~~~~~~v~~~~-----~~~i~i~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~pl 75 (360)
T 1ry6_A 1 MIKVVVRKRPLSELEKKKKDSDIITVKN-----NCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVYENTIKPL 75 (360)
T ss_dssp CEEEEEEECCCCHHHHHTTCCBCEEEEE-----TTEEEEEEEEEETTTEEEEEEEEEECSEEECTTCCHHHHHHHHTHHH
T ss_pred CeEEEEECCCCChHHhccCCceEEEECC-----CCEEEEeCCccccccccccccceEEeeeEecCCCCHHHHHHHHhhhh
Confidence 599999999999988765 34555542 2334443221100 12468999999999999999999999999
Q ss_pred HHHHhc-CCceEEEeeccCCCCcceEeecCC-----CCcchhHHHHHHHHhhcc----ccCceEEEEEEEEecceecccc
Q 035971 88 ISEVFN-GINATIVACGAKGSGKTRVIQGSY-----EEPGLAALAVDEILSISE----KMGKSITISFYEIFQDHVYDLL 157 (614)
Q Consensus 88 V~~vl~-G~N~tI~aYGqTGSGKTyTm~G~~-----~~~GLipral~~LF~~~~----~~~~sV~vS~~EIYnE~V~DLL 157 (614)
|+++++ |||+||||||||||||||||+|+. +.+||+||++++||..++ +..+.|++||+|||||+|+|||
T Consensus 76 v~~~~~~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL 155 (360)
T 1ry6_A 76 IIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLL 155 (360)
T ss_dssp HHHHHHHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHHHCSSSCEEEEEEEEEEETTEEEESC
T ss_pred hhhhccCCceeEEEeeCCCCCCCCEEEecCCCCCCccCCCcHHHHHHHHHHHHHhhccCCceEEEEEEEEeeCCeeEEcc
Confidence 999995 999999999999999999999974 679999999999999876 3568899999999999999999
Q ss_pred CcccccceEEecCCCceEecCCeEEEcCCHHHHHHHHHHHHhcCcccccccCCCCCCceEEEEEEEeeccCccccceeEE
Q 035971 158 DPKQQEVQILENGQGKIQLKGLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVSPVSNFLPTGKMNF 237 (614)
Q Consensus 158 ~~~~~~l~i~ed~~~~~~v~gLtev~V~S~ee~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~I~v~~~~~~~~~skL~f 237 (614)
++.. .+.+++++.++++|.|++++.|.+++|+++++..|..+|++++|.+|..|||||+||+|++.+.......|+|+|
T Consensus 156 ~~~~-~~~~~e~~~~~~~v~gl~~~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~skL~l 234 (360)
T 1ry6_A 156 QKRK-MVAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDINKNTSLGKIAF 234 (360)
T ss_dssp CC------------CCBCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTCCTTGGGGSEEEEEEEEEETTTTEEEEEEEE
T ss_pred cCCc-cceeeEcCCCCEEEcCcEEEEeCCHHHHHHHHHHHhhhhhcccccccCCCccceEEEEEEEEeccCCcceeEEEE
Confidence 8765 477889999999999999999999999999999999999999999999999999999999998766667899999
Q ss_pred EeCCCccccccccCcc-chhhhhHHhhhhHHHHHHHHHHHhcCCCCccCCCChhhhhhhhccCCCceEEEEEEcCcC---
Q 035971 238 VDLAGYQDIRRKSTEG-SIFVENTKVNKSIYTLFNVVYALNANESHVPYRESKLTRMLQESLGCKSKILMLTCLLPR--- 313 (614)
Q Consensus 238 VDLAGsEr~~k~~~~g-~~l~E~~~INkSL~aL~~vI~aL~~~~~~vPyRdSkLTrLLqdsLgGnskt~mI~~vsP~--- 313 (614)
||||||||..++++.+ .+++|+..||+||++|++||.+|..++.||||||||||+||||+|||||+|+||+||||+
T Consensus 235 VDLAGSEr~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~ 314 (360)
T 1ry6_A 235 IDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISC 314 (360)
T ss_dssp EECCCTTGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSCCGGGCHHHHHTGGGGSSSCEEEEEEEECCBGGG
T ss_pred EECCCCccccccccccccchHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCHHHHHHHHHhCCCCeEEEEEEeCCCccc
Confidence 9999999999988876 568899999999999999999999999999999999999999999999999999999998
Q ss_pred ---chhHHHHHHhHhhhhhcCCCcccccc
Q 035971 314 ---SVSTTKTQTGSQMHSSTKKATGVASV 339 (614)
Q Consensus 314 ---Tl~TL~~asr~~r~i~nk~~~~~~~~ 339 (614)
|++||+||+|+ +.|+|.++.+....
T Consensus 315 ~~ETlsTLrfA~ra-k~i~n~~~~~~~~~ 342 (360)
T 1ry6_A 315 CEQTLNTLRYSSRV-KNKGNSKLEGKPIP 342 (360)
T ss_dssp HHHHHHHHHHHHHH-CC------------
T ss_pred HHHHHHHHHHHHHH-hhcccCcccCCCCc
Confidence 99999999999 99999877555543
No 21
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=2e-77 Score=637.09 Aligned_cols=310 Identities=24% Similarity=0.404 Sum_probs=249.8
Q ss_pred CCCCCCCeEEEEEeCCCCChhhccCCcEEEeCCCCCCCCeEEEEeCCCC-------CCCceeeEeeeeecCCCChHHHHh
Q 035971 9 GLNISKKARVIAKIRGFADLEAESANWVCIQKPNGEDSDSVTVSFGEQP-------SSRKECYKLDYCYEQNEGNGIIFA 81 (614)
Q Consensus 9 ~~~~~~~VrV~vRvRP~~~~e~~~~~~v~v~~~~~~d~~~v~v~~~~~~-------~~~~~~F~FD~VF~~~asQ~eVf~ 81 (614)
.++.+++|||||||||+.+.+. .++.+. ++...+.+...... ....+.|.||+||+ +++|++||+
T Consensus 19 ~~~~~~~i~V~vRvRP~~~~e~---~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~-~~sQ~~Vy~ 90 (359)
T 3nwn_A 19 SMGTRKKVHAFVRVKPTDDFAH---EMIRYG----DDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYE 90 (359)
T ss_dssp -----CCEEEEEEECCCSSCCT---TTEEEC----TTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHH
T ss_pred CCCCCCCEEEEEEcCCCCcccc---cceeec----CCCcEEEEecCCccccccccCCcCceEeecCccCC-CCCHHHHHH
Confidence 3456789999999999876663 344442 24445555544321 23457899999997 689999999
Q ss_pred hhhHHHHHHHhcCCceEEEeeccCCCCcceEeecCCC---CcchhHHHHHHHHhhcc---ccCceEEEEEEEEecceecc
Q 035971 82 REVKPLISEVFNGINATIVACGAKGSGKTRVIQGSYE---EPGLAALAVDEILSISE---KMGKSITISFYEIFQDHVYD 155 (614)
Q Consensus 82 ~~v~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~---~~GLipral~~LF~~~~---~~~~sV~vS~~EIYnE~V~D 155 (614)
.+++|+|+++|+|||+||||||||||||||||+|+.. ++|||||++++||+.++ ...+.|++||+|||||+|+|
T Consensus 91 ~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~~~~~~~~~~~v~vS~~EIYnE~i~D 170 (359)
T 3nwn_A 91 TVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFD 170 (359)
T ss_dssp HHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTTSCEEEEEEEEEEETTEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEEeCCCCCCccEEeCCccCCccchhhHHHHHHHHHHHhhcCCCCcEEEEEEEEEEecccccc
Confidence 9999999999999999999999999999999999753 58999999999999876 45689999999999999999
Q ss_pred ccCcc------cccceEEecCCCceEecCCeEEEcCCHHHHHHHHHHHHhcCcccccccCCCCCCceEEEEEEEeeccC-
Q 035971 156 LLDPK------QQEVQILENGQGKIQLKGLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVSPVSN- 228 (614)
Q Consensus 156 LL~~~------~~~l~i~ed~~~~~~v~gLtev~V~S~ee~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~I~v~~~~~- 228 (614)
||++. ...+.+++++. ++++.|++++.|.+.+|+++++..|..+|++++|.+|..|||||+||+|+|.....
T Consensus 171 LL~~~~~~~~~~~~~~~~~~~~-g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~ 249 (359)
T 3nwn_A 171 LLSTLPYVGPSVTPMTIVENPQ-GVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRT 249 (359)
T ss_dssp TTSSSTTSCTTTSCCEEEEETT-EEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC---
T ss_pred ccccccccccccccceEEecCC-ceEEeccEEEEecCHHHHHHHHHhhhhhcccccccCccccCcceEEEEEEEEeeccc
Confidence 99853 34567777765 59999999999999999999999999999999999999999999999999977543
Q ss_pred ----ccccceeEEEeCCCccccccccCccchhhhhHHhhhhHHHHHHHHHHHhcC-CCCccCCCChhhhhhhhccCCCce
Q 035971 229 ----FLPTGKMNFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNAN-ESHVPYRESKLTRMLQESLGCKSK 303 (614)
Q Consensus 229 ----~~~~skL~fVDLAGsEr~~k~~~~g~~l~E~~~INkSL~aL~~vI~aL~~~-~~~vPyRdSkLTrLLqdsLgGnsk 303 (614)
....|+|+|||||||||..++++.|.+++|+..||+||++|++||.+|+++ ..||||||||||+||||+|||||+
T Consensus 250 ~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~~Lg~vI~aL~~~~~~hVPYRdSkLT~lLqdsLgGnsk 329 (359)
T 3nwn_A 250 LSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCN 329 (359)
T ss_dssp ----CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSE
T ss_pred ccCcccccccceeeeccccccccccCCchhHHHhhhhhcccHHHHHHHHHHHHhcCCCcCCcccCHHHHHHHHhcCCCcc
Confidence 345799999999999999999999999999999999999999999999874 579999999999999999999999
Q ss_pred EEEEEEcCcC------chhHHHHHHhHhhhh
Q 035971 304 ILMLTCLLPR------SVSTTKTQTGSQMHS 328 (614)
Q Consensus 304 t~mI~~vsP~------Tl~TL~~asr~~r~i 328 (614)
|+||+||||+ |++||+||+|+ |.|
T Consensus 330 t~mI~~isP~~~~~~ETlsTL~fA~ra-k~I 359 (359)
T 3nwn_A 330 MVLVTNIYGEAAQLEETLSSLRFASRM-KLV 359 (359)
T ss_dssp EEEEEEECCSGGGHHHHHHHHHHHTTG-GGC
T ss_pred EEEEEEeCCchhhHHHHHHHHHHHHHH-cCC
Confidence 9999999999 99999999999 654
No 22
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=100.00 E-value=1e-77 Score=638.86 Aligned_cols=305 Identities=28% Similarity=0.436 Sum_probs=244.9
Q ss_pred CCeEEEEEeCCCCChhhccC-Cc-EEEeCCCCCCCCeEEEEeCC------CCCCCceeeEeeeeec--------CCCChH
Q 035971 14 KKARVIAKIRGFADLEAESA-NW-VCIQKPNGEDSDSVTVSFGE------QPSSRKECYKLDYCYE--------QNEGNG 77 (614)
Q Consensus 14 ~~VrV~vRvRP~~~~e~~~~-~~-v~v~~~~~~d~~~v~v~~~~------~~~~~~~~F~FD~VF~--------~~asQ~ 77 (614)
++|+|+||+||+.+.|...+ .| +.+. ...+.+.... ......+.|.||+||+ +.++|+
T Consensus 1 S~VkV~vRvRPl~~~E~~~~~~~vv~~~------~~~~~~~~~~~~~~~~~~~~~~k~F~FD~vF~~~d~~~~~~~a~Q~ 74 (354)
T 3gbj_A 1 SKVKVAVRIRPMNRRETDLHTKCVVDVD------ANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQD 74 (354)
T ss_dssp -CEEEEEEECCCCHHHHHHTCCBCEEEE------TTEEEECCC-----------CCEEEECSEEEECSCTTCTTTBCCHH
T ss_pred CCcEEEEECCCCChhhhccCCceEEEeC------CCeEEEeCCccccccccccCCceEEEeeEEeccCccccccccccHH
Confidence 48999999999999887653 23 3332 2233332111 1123468999999994 568899
Q ss_pred HHHhhhhHHHHHHHhcCCceEEEeeccCCCCcceEeecCCCCcchhHHHHHHHHhhcc-----ccCceEEEEEEEEecce
Q 035971 78 IIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQGSYEEPGLAALAVDEILSISE-----KMGKSITISFYEIFQDH 152 (614)
Q Consensus 78 eVf~~~v~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~GLipral~~LF~~~~-----~~~~sV~vS~~EIYnE~ 152 (614)
+||+.++.|+|+++|+|||+||||||||||||||||+|+.+++|||||++++||+.+. ...+.|+|||+|||||+
T Consensus 75 ~vy~~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~ 154 (354)
T 3gbj_A 75 IVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEK 154 (354)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHCBTTEEEEEEEEEEEEETTE
T ss_pred HHHHHhhHHHHHHHhCCceeEEEeeCCCCCCCceEEecCCCCCchhhHHHHHHHHHHHhhcccccceeeeceeEEEecCe
Confidence 9999999999999999999999999999999999999999999999999999998775 24578999999999999
Q ss_pred eccccCcc--cccceEEecCCCceEecCCeEEEcCCHHHHHHHHHHHHhcCcccccccCCCCCCceEEEEEEEeeccC--
Q 035971 153 VYDLLDPK--QQEVQILENGQGKIQLKGLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVSPVSN-- 228 (614)
Q Consensus 153 V~DLL~~~--~~~l~i~ed~~~~~~v~gLtev~V~S~ee~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~I~v~~~~~-- 228 (614)
|+|||++. ...+.+++++.++++|.|++++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|++.+...
T Consensus 155 i~DLL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~ 234 (354)
T 3gbj_A 155 VRDLLDPKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDV 234 (354)
T ss_dssp EEETTC------CBCBC------CCBTTCCCEEECSHHHHHHHHHHHHHCC----------CTTSEEEEEEEEEEEEECT
T ss_pred eeEccCCCCCCcceEEEEcCCCCEEEEeeEEEecCCHHHHHHHHHHHHhcCCeeecCCCCCCCcccEEEEEEEEEEeccc
Confidence 99999885 35799999999999999999999999999999999999999999999999999999999999976421
Q ss_pred -----ccccceeEEEeCCCccccccccCccchhhhhHHhhhhHHHHHHHHHHHhc------CCCCccCCCChhhhhhhhc
Q 035971 229 -----FLPTGKMNFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNA------NESHVPYRESKLTRMLQES 297 (614)
Q Consensus 229 -----~~~~skL~fVDLAGsEr~~k~~~~g~~l~E~~~INkSL~aL~~vI~aL~~------~~~~vPyRdSkLTrLLqds 297 (614)
....|+|+|||||||||..++++.|.+++|+..||+||++|++||.+|++ +..||||||||||+||||+
T Consensus 235 ~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~hvPyRdSkLT~lLqds 314 (354)
T 3gbj_A 235 KSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDS 314 (354)
T ss_dssp TSCEEEEEEEEEEEEECCCCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHC------CCCCCGGGSHHHHHTHHH
T ss_pred CCCCCCeeEEEEEEEECCCCCchhhcCCccccchhHHHhhHHHHHHHHHHHHHHhhhcccCCCCcccccccHHHHHHHHH
Confidence 24568999999999999999999999999999999999999999999985 4579999999999999999
Q ss_pred cCCCceEEEEEEcCcC------chhHHHHHHhH
Q 035971 298 LGCKSKILMLTCLLPR------SVSTTKTQTGS 324 (614)
Q Consensus 298 LgGnskt~mI~~vsP~------Tl~TL~~asr~ 324 (614)
|||||+|+||+||||+ |++||+||.|+
T Consensus 315 LgGnskt~mIa~vsP~~~~~~ETlsTLr~a~~~ 347 (354)
T 3gbj_A 315 LGGNSKTAMVATVSPAADNYDETLSTLRYADRA 347 (354)
T ss_dssp HSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHH
T ss_pred hCCCCeEEEEEEeCCCcchHHHHHHHHHHHHHh
Confidence 9999999999999999 99999999999
No 23
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=100.00 E-value=2.1e-77 Score=636.65 Aligned_cols=311 Identities=24% Similarity=0.399 Sum_probs=253.7
Q ss_pred CCCCCCCCeEEEEEeCCCCChhhccCCcEEEeCCCCCCCCeEEEEeCCCC-------CCCceeeEeeeeecCCCChHHHH
Q 035971 8 TGLNISKKARVIAKIRGFADLEAESANWVCIQKPNGEDSDSVTVSFGEQP-------SSRKECYKLDYCYEQNEGNGIIF 80 (614)
Q Consensus 8 ~~~~~~~~VrV~vRvRP~~~~e~~~~~~v~v~~~~~~d~~~v~v~~~~~~-------~~~~~~F~FD~VF~~~asQ~eVf 80 (614)
.+.+.+|+|||||||||+.+.+ ..++.+.. +...+.+...... ....+.|.||+||+ +++|++||
T Consensus 17 ~~~~~~g~IrV~vRvRP~~~~~---~~~~~~~~----~~~~v~i~~~~~~~~~~~~~~~~~~~F~fD~Vf~-~~sQ~~Vy 88 (358)
T 2nr8_A 17 RGSGTRKKVHAFVRVKPTDDFA---HEMIRYGD----DKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVY 88 (358)
T ss_dssp ------CCEEEEEEECCCSSCC---TTTEEECT----TSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHH
T ss_pred CCCCCCCCeEEEEEcCCCCCCc---cceeEECC----CCCEEEEecCCccccccccCCCcceEEECCeecC-CcCHHHHH
Confidence 3567889999999999987643 34555532 4556666655432 13357899999995 89999999
Q ss_pred hhhhHHHHHHHhcCCceEEEeeccCCCCcceEeecCCCC---cchhHHHHHHHHhhccc---cCceEEEEEEEEecceec
Q 035971 81 AREVKPLISEVFNGINATIVACGAKGSGKTRVIQGSYEE---PGLAALAVDEILSISEK---MGKSITISFYEIFQDHVY 154 (614)
Q Consensus 81 ~~~v~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~---~GLipral~~LF~~~~~---~~~sV~vS~~EIYnE~V~ 154 (614)
+.+++|+|+++|+|||+||||||||||||||||+|+.++ +|||||++++||+.+++ ..+.|+|||+|||||+|+
T Consensus 89 ~~~~~~lv~~~l~G~N~tIfAYGqTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~ 168 (358)
T 2nr8_A 89 ETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLF 168 (358)
T ss_dssp HHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTTSCEEEEEEEEEEETTEEE
T ss_pred HHHHHHHHHHHhCCCceEEEEECCCCCCCceEecccccccccCCcHHHHHHHHHHHHhhcCCceEEEEEEEEEEeCCeee
Confidence 999999999999999999999999999999999998764 89999999999998874 568999999999999999
Q ss_pred cccCcc------cccceEEecCCCceEecCCeEEEcCCHHHHHHHHHHHHhcCcccccccCCCCCCceEEEEEEEeeccC
Q 035971 155 DLLDPK------QQEVQILENGQGKIQLKGLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVSPVSN 228 (614)
Q Consensus 155 DLL~~~------~~~l~i~ed~~~~~~v~gLtev~V~S~ee~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~I~v~~~~~ 228 (614)
|||++. ..++.+++++ .+++|+|++++.|.+.+|++.+|..|.++|++++|.+|..|||||+||+|++.+...
T Consensus 169 DLL~~~~~~~~~~~~l~i~e~~-~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~ 247 (358)
T 2nr8_A 169 DLLSTLPYVGPSVTPMTIVENP-QGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSR 247 (358)
T ss_dssp ETTSSSTTSCTTTSCCEEEEET-TEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC--
T ss_pred ECcCCccccCccCCceEEEECC-CceEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcCeEEEEEEEEEEec
Confidence 999863 3568999998 679999999999999999999999999999999999999999999999999987543
Q ss_pred -----ccccceeEEEeCCCccccccccCccchhhhhHHhhhhHHHHHHHHHHHhcC-CCCccCCCChhhhhhhhccCCCc
Q 035971 229 -----FLPTGKMNFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNAN-ESHVPYRESKLTRMLQESLGCKS 302 (614)
Q Consensus 229 -----~~~~skL~fVDLAGsEr~~k~~~~g~~l~E~~~INkSL~aL~~vI~aL~~~-~~~vPyRdSkLTrLLqdsLgGns 302 (614)
....|+|+|||||||||..++++.|.+++|+..||+||++|++||.+|+++ ..||||||||||+||||+|||||
T Consensus 248 ~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hiPyRdSkLT~LLqdsLgGns 327 (358)
T 2nr8_A 248 TLSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNC 327 (358)
T ss_dssp -----CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSS
T ss_pred cCCCCCEEEEEEEEEECCCCCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCC
Confidence 345799999999999999999999999999999999999999999999875 46999999999999999999999
Q ss_pred eEEEEEEcCcC------chhHHHHHHhHhhhh
Q 035971 303 KILMLTCLLPR------SVSTTKTQTGSQMHS 328 (614)
Q Consensus 303 kt~mI~~vsP~------Tl~TL~~asr~~r~i 328 (614)
+|+||+||||+ |++||+||+|+ +.|
T Consensus 328 kt~mIa~isP~~~~~~ETlsTLrfA~Ra-k~I 358 (358)
T 2nr8_A 328 NMVLVTNIYGEAAQLEETLSSLRFASRM-KLV 358 (358)
T ss_dssp EEEEEEEECCSGGGHHHHHHHHHHHTTG-GGC
T ss_pred eEEEEEEeCCchhhHHHHHHHHHHHHHh-ccC
Confidence 99999999999 99999999999 654
No 24
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=100.00 E-value=5.4e-77 Score=641.38 Aligned_cols=311 Identities=24% Similarity=0.423 Sum_probs=253.6
Q ss_pred CCCeEEEEEeCCCCChhhccCC--cEEEeCCCCCCCCeEEEEeCCCCC-----CCceeeEeeeeecCCCChHHHHhhhhH
Q 035971 13 SKKARVIAKIRGFADLEAESAN--WVCIQKPNGEDSDSVTVSFGEQPS-----SRKECYKLDYCYEQNEGNGIIFAREVK 85 (614)
Q Consensus 13 ~~~VrV~vRvRP~~~~e~~~~~--~v~v~~~~~~d~~~v~v~~~~~~~-----~~~~~F~FD~VF~~~asQ~eVf~~~v~ 85 (614)
.++|+|+||+||+.+.|...+. ++.+. +...+.+..+.... ...+.|.||+||+++++|++||+.++.
T Consensus 70 ~~~I~V~vRvRPl~~~E~~~~~~~~v~~~-----~~~~v~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~tQ~~Vy~~~~~ 144 (410)
T 1v8k_A 70 EHRICVCVRKRPLNKQELAKKEIDVISVP-----SKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTAR 144 (410)
T ss_dssp CCCEEEEEEECCCCHHHHHTTCCBCEECC-----SSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTH
T ss_pred CCCeEEEEEeCCCChhHhhcCCccEEEEC-----CCCEEEEecCcccccccccccceEEeeeEEEecCCChhhhhHHHHH
Confidence 6899999999999998876543 44442 22344444322211 124689999999999999999999999
Q ss_pred HHHHHHhcCCceEEEeeccCCCCcceEeecCC------CCcchhHHHHHHHHhhcc-----ccCceEEEEEEEEecceec
Q 035971 86 PLISEVFNGINATIVACGAKGSGKTRVIQGSY------EEPGLAALAVDEILSISE-----KMGKSITISFYEIFQDHVY 154 (614)
Q Consensus 86 plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~------~~~GLipral~~LF~~~~-----~~~~sV~vS~~EIYnE~V~ 154 (614)
|+|+++|+|||+||||||||||||||||+|+. ..+||+||++++||..+. ...+.|++||+|||||+|+
T Consensus 145 plV~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~~~lF~~~~~~~~~~~~~~V~vS~lEIYnE~i~ 224 (410)
T 1v8k_A 145 PLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVF 224 (410)
T ss_dssp HHHHHHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTSHHHHTTCCEEEEEEEEEETTEEE
T ss_pred HHHHHHhcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhHHHHHHHHhhhcccCccEEEEEEEEEeeCCEEE
Confidence 99999999999999999999999999999953 468999999999999876 3568999999999999999
Q ss_pred cccCcccccceEEecCCCceEecCCeEEEcCCHHHHHHHHHHHHhcCcccccccCCCCCCceEEEEEEEeeccCccccce
Q 035971 155 DLLDPKQQEVQILENGQGKIQLKGLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVSPVSNFLPTGK 234 (614)
Q Consensus 155 DLL~~~~~~l~i~ed~~~~~~v~gLtev~V~S~ee~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~I~v~~~~~~~~~sk 234 (614)
|||++.. .+.+++|+.++++|.||+++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|.+.+.. ...|+
T Consensus 225 DLL~~~~-~l~i~ed~~~~v~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~--~~~sk 301 (410)
T 1v8k_A 225 DLLNKKA-KLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKG--RLHGK 301 (410)
T ss_dssp ETTTTTE-EEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC--------CCCSSEEEEEEEEESSS--SEEEE
T ss_pred ECCCCCC-CceEEECCCCCeEecCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCCCCceEEEEEEEEeCC--cceeE
Confidence 9999764 58999999999999999999999999999999999999999999999999999999999998764 46799
Q ss_pred eEEEeCCCccccccccC-ccchhhhhHHhhhhHHHHHHHHHHHhcCCCCccCCCChhhhhhhhc-cCCCceEEEEEEcCc
Q 035971 235 MNFVDLAGYQDIRRKST-EGSIFVENTKVNKSIYTLFNVVYALNANESHVPYRESKLTRMLQES-LGCKSKILMLTCLLP 312 (614)
Q Consensus 235 L~fVDLAGsEr~~k~~~-~g~~l~E~~~INkSL~aL~~vI~aL~~~~~~vPyRdSkLTrLLqds-LgGnskt~mI~~vsP 312 (614)
|+|||||||||..+++. .+.+++|+..||+||++|++||.+|+.++.||||||||||+||||+ |||||+|+|||||||
T Consensus 302 L~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hIPYRdSKLTrLLqdsllGgnskT~mIa~iSP 381 (410)
T 1v8k_A 302 FSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISP 381 (410)
T ss_dssp EEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC------CCCCHHHHHTTHHHHSSSEEEEEEEEECC
T ss_pred EEEEECCCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhcCCCCCCcccchhHHHHhhcccCCCceEEEEEEeCC
Confidence 99999999999988764 5678889999999999999999999999999999999999999999 599999999999999
Q ss_pred C------chhHHHHHHhHhhhhhcCC
Q 035971 313 R------SVSTTKTQTGSQMHSSTKK 332 (614)
Q Consensus 313 ~------Tl~TL~~asr~~r~i~nk~ 332 (614)
+ |++||+||+|+ +.|..++
T Consensus 382 ~~~~~~ETlsTLrfA~ra-k~i~~~~ 406 (410)
T 1v8k_A 382 GISSCEYTLNTLRYADRV-KELSHHH 406 (410)
T ss_dssp BGGGHHHHHHHHHHHHHH-HTTC---
T ss_pred ccccHHHHHHHHHHHHHh-ccCCCCC
Confidence 8 99999999999 8887765
No 25
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-78 Score=651.11 Aligned_cols=325 Identities=24% Similarity=0.358 Sum_probs=272.1
Q ss_pred CCCCCCCCCCCCCeEEEEEeCCCCCh-hhccCCcEEEeCCCCCCC-CeEEEEeCCCCCCCceeeEeeeeecCCCChHHHH
Q 035971 3 RTKADTGLNISKKARVIAKIRGFADL-EAESANWVCIQKPNGEDS-DSVTVSFGEQPSSRKECYKLDYCYEQNEGNGIIF 80 (614)
Q Consensus 3 r~~~~~~~~~~~~VrV~vRvRP~~~~-e~~~~~~v~v~~~~~~d~-~~v~v~~~~~~~~~~~~F~FD~VF~~~asQ~eVf 80 (614)
|..++..++++|+|||||||||+.+. +.....++.+...++... ..+.+... ......+.|.||+||+++++|++||
T Consensus 48 r~l~n~~~elkgnIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~F~FD~VF~~~~~Q~~Vf 126 (403)
T 4etp_A 48 RTLHNELQELRGNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKI-QNTAQVHEFKFDKIFDQQDTNVDVF 126 (403)
T ss_dssp HHHHHHHHHHHCSEEEEEEECCCCTTTSCSCCTTEEECCCBTTTTBEEEEEEEC-SSSCEEEEEEESEEECTTCCHHHHH
T ss_pred HHHHHHHHHcCCCeEEEEEeCCCCCcccccCCCeeEEeeccCCCCceEEEEecC-CCCcCceEEEcCEEECCCCchHHHH
Confidence 34556677889999999999999877 444466777764432221 12333222 2233468999999999999999999
Q ss_pred hhhhHHHHHHHhcCCceEEEeeccCCCCcceEeecCCCCcchhHHHHHHHHhhccc-----cCceEEEEEEEEecceecc
Q 035971 81 AREVKPLISEVFNGINATIVACGAKGSGKTRVIQGSYEEPGLAALAVDEILSISEK-----MGKSITISFYEIFQDHVYD 155 (614)
Q Consensus 81 ~~~v~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~GLipral~~LF~~~~~-----~~~sV~vS~~EIYnE~V~D 155 (614)
+. +.|+|+++|+|||+||||||||||||||||+|+ ++|||||++++||..++. +.|.|++||+|||||+|+|
T Consensus 127 ~~-v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~g~--~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~D 203 (403)
T 4etp_A 127 KE-VGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNP--GDGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVD 203 (403)
T ss_dssp HH-HHHHHHHHHTTCCEEEEEESCTTSSHHHHHHCT--TTSHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEEEETTEEEE
T ss_pred HH-HHHHHHHHhCCcceEEEEECCCCCCCceEeCCC--CCccchhHHHHHHHHHHhhhccCceEEEEEEEEEEecceeeE
Confidence 86 779999999999999999999999999999996 569999999999998763 4689999999999999999
Q ss_pred ccCccc---------ccceEEecC-CCceEecCCeEEEcCCHHHHHHHHHHHHhcCcccccccCCCCCCceEEEEEEEee
Q 035971 156 LLDPKQ---------QEVQILENG-QGKIQLKGLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVSP 225 (614)
Q Consensus 156 LL~~~~---------~~l~i~ed~-~~~~~v~gLtev~V~S~ee~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~I~v~~ 225 (614)
||++.. ..+.+++++ .++++|.|++++.|.+++|++.+|..|..+|++++|.+|..|||||+||+|++.+
T Consensus 204 LL~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~ 283 (403)
T 4etp_A 204 LLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSG 283 (403)
T ss_dssp TTCC--------CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHHC--C----CHHHHHHHTSEEEEEEEEEE
T ss_pred ccCCccccccccccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHHHHHHHHHHhcccccccCCcccCCcccEEEEEEEE
Confidence 998753 246676665 5679999999999999999999999999999999999999999999999999987
Q ss_pred ccC---ccccceeEEEeCCCccccccccCccchhhhhHHhhhhHHHHHHHHHHHhcCCC---CccCCCChhhhhhhhccC
Q 035971 226 VSN---FLPTGKMNFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANES---HVPYRESKLTRMLQESLG 299 (614)
Q Consensus 226 ~~~---~~~~skL~fVDLAGsEr~~k~~~~g~~l~E~~~INkSL~aL~~vI~aL~~~~~---~vPyRdSkLTrLLqdsLg 299 (614)
.+. ....|+|+|||||||||..++++.|.+++|+..||+||++|++||.+|+.+.. ||||||||||+||||+||
T Consensus 284 ~~~~~~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~LLqdsLg 363 (403)
T 4etp_A 284 SNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLT 363 (403)
T ss_dssp EETTTCCEEEEEEEEEECCCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTTSCCCGGGSHHHHHTGGGTS
T ss_pred eecCCCCeeEEEEEEEECCCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccchHHHHHHHhcC
Confidence 654 34568999999999999999999999999999999999999999999987654 999999999999999999
Q ss_pred CCceEEEEEEcCcC------chhHHHHHHhHhhhhhcCC
Q 035971 300 CKSKILMLTCLLPR------SVSTTKTQTGSQMHSSTKK 332 (614)
Q Consensus 300 Gnskt~mI~~vsP~------Tl~TL~~asr~~r~i~nk~ 332 (614)
|||+|+||+||||+ |++||+||+|+ +.++..+
T Consensus 364 Gnskt~mi~~vsP~~~~~~ETl~TL~fA~rv-~~~~~~~ 401 (403)
T 4etp_A 364 GDSKTLMFVNISPSSSHINETLNSLRFASKV-NSTRLVS 401 (403)
T ss_dssp TTCEEEEEEEECCSGGGHHHHHHHHHHHHHH-CCC----
T ss_pred CCceEEEEEEeCCchhhHHHHHHHHHHHHHH-hhcccCC
Confidence 99999999999999 99999999999 8877654
No 26
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=100.00 E-value=7.1e-78 Score=650.64 Aligned_cols=320 Identities=26% Similarity=0.394 Sum_probs=266.2
Q ss_pred CCCCCCCCCCCCCeEEEEEeCCCCChhhccCCcEEEeCCCCCCCCeEEEEeCCCCC---CCceeeEeeeeecCCCChHHH
Q 035971 3 RTKADTGLNISKKARVIAKIRGFADLEAESANWVCIQKPNGEDSDSVTVSFGEQPS---SRKECYKLDYCYEQNEGNGII 79 (614)
Q Consensus 3 r~~~~~~~~~~~~VrV~vRvRP~~~~e~~~~~~v~v~~~~~~d~~~v~v~~~~~~~---~~~~~F~FD~VF~~~asQ~eV 79 (614)
|..++..++++|+|||+|||||+.+.|.....|+.... +...+.+...+... ...+.|.||+||+++++|++|
T Consensus 48 r~l~n~~~~l~gnIrV~vRvRP~~~~E~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~V 123 (412)
T 3u06_A 48 KELHNTVMDLRDNIRVFCRIRPPLESEENRMCCTWTYH----DESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDI 123 (412)
T ss_dssp HHHHHHHHHHTCSEEEEEEECCCCGGGTTSCBCEEEEE----ETTEEEEECCC-------CCCEEECSEEECTTCCHHHH
T ss_pred HHHHHHHHHhCCCEEEEEEcCCCCchhccCcceEEEec----CCCEEEEecCCcccccccCceEEeeCeEcCCCCCHHHH
Confidence 34566677889999999999999988876655554432 22344443322211 125789999999999999999
Q ss_pred HhhhhHHHHHHHhcCCceEEEeeccCCCCcceEeecCCCCcchhHHHHHHHHhhcc-----ccCceEEEEEEEEecceec
Q 035971 80 FAREVKPLISEVFNGINATIVACGAKGSGKTRVIQGSYEEPGLAALAVDEILSISE-----KMGKSITISFYEIFQDHVY 154 (614)
Q Consensus 80 f~~~v~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~GLipral~~LF~~~~-----~~~~sV~vS~~EIYnE~V~ 154 (614)
|+ .+.|+|+++|+|||+||||||||||||||||+|..+++|||||++++||+.+. .+.|.|++||+|||||+|+
T Consensus 124 f~-~v~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~ 202 (412)
T 3u06_A 124 FE-MVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLY 202 (412)
T ss_dssp HT-TTHHHHHHHHTTCCEEEEEESSTTSSHHHHHTEETTEECHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEE
T ss_pred HH-HHHHHHHHHHCCCceEEEEecCCCCCCeeEecCCCCCCccHHHHHHHHHHhhhhhcccCceEEEEEEEEEEeCCeeE
Confidence 98 57899999999999999999999999999999999999999999999999876 3568899999999999999
Q ss_pred cccCcccccceE--EecCCCceEecCCeEEEcCCHHHHHHHHHHHHhcCcccccccCCCCCCceEEEEEEEeeccC---c
Q 035971 155 DLLDPKQQEVQI--LENGQGKIQLKGLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVSPVSN---F 229 (614)
Q Consensus 155 DLL~~~~~~l~i--~ed~~~~~~v~gLtev~V~S~ee~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~I~v~~~~~---~ 229 (614)
|||++....+.+ .+++.++++|.|++++.|.+++|++.++..|..+|++++|.+|..|||||+||+|++.+... .
T Consensus 203 DLL~~~~~~~~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~ 282 (412)
T 3u06_A 203 DLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQE 282 (412)
T ss_dssp ETTCCSCCCCCEEECSSCTTSEEETTCCCEECCSHHHHHHHHHHHHHHCC-----CHHHHTTCEEEEEEEEEEEETTTTE
T ss_pred EcCCCCCCCceeeeeecCCCCEEEcceEEEEeCCHHHHHHHHHHHHhcccccccCCCCCCcCceEEEEEEEEEEeCCCCC
Confidence 999887665555 46778899999999999999999999999999999999999999999999999999987654 3
Q ss_pred cccceeEEEeCCCccccccccCccchhhhhHHhhhhHHHHHHHHHHHhcCCCCccCCCChhhhhhhhccCCCceEEEEEE
Q 035971 230 LPTGKMNFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANESHVPYRESKLTRMLQESLGCKSKILMLTC 309 (614)
Q Consensus 230 ~~~skL~fVDLAGsEr~~k~~~~g~~l~E~~~INkSL~aL~~vI~aL~~~~~~vPyRdSkLTrLLqdsLgGnskt~mI~~ 309 (614)
...|+|+||||||||+.. .+.+++|+..||+||++|++||.+|+.++.||||||||||+||||+|||||+|+||+|
T Consensus 283 ~~~~kL~lVDLAGSEr~~----~~~rl~E~~~INkSL~aLg~vI~aL~~~~~hiPyRdSkLT~LLqdsLgGnskt~mI~~ 358 (412)
T 3u06_A 283 ISVGSINLVDLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFIN 358 (412)
T ss_dssp EEEEEEEEEECCCCCC--------------CTTTHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHHGGGTSTTCEEEEEEE
T ss_pred EEEEEEEEEECCCCCcCC----ccchhHhHHHHhHHHHHHHHHHHHHhccCCCCCccccHHHHHHHHhcCCCceEEEEEE
Confidence 456899999999999874 3579999999999999999999999999999999999999999999999999999999
Q ss_pred cCcC------chhHHHHHHhHhhhhhcCC
Q 035971 310 LLPR------SVSTTKTQTGSQMHSSTKK 332 (614)
Q Consensus 310 vsP~------Tl~TL~~asr~~r~i~nk~ 332 (614)
|||+ |++||+||+|+ +.++..+
T Consensus 359 vsP~~~~~~ETl~TLrfA~rv-~~i~~~~ 386 (412)
T 3u06_A 359 VSPFQDCFQESVKSLRFAASV-NSCKMTK 386 (412)
T ss_dssp ECCBGGGHHHHHHHHHHHHHH-HHHCC--
T ss_pred eCCChhhHHHHHHHHHHHHHH-hhccccc
Confidence 9998 99999999999 8887544
No 27
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=100.00 E-value=4.2e-75 Score=616.04 Aligned_cols=298 Identities=22% Similarity=0.355 Sum_probs=235.8
Q ss_pred CCCCeEEEEEeCCCCChhhcc-CCcEEEeCCCCCCCCeEEEEeCCCCCCCceeeEeeeeecCCCChHHHHhhhhHHHHHH
Q 035971 12 ISKKARVIAKIRGFADLEAES-ANWVCIQKPNGEDSDSVTVSFGEQPSSRKECYKLDYCYEQNEGNGIIFAREVKPLISE 90 (614)
Q Consensus 12 ~~~~VrV~vRvRP~~~~e~~~-~~~v~v~~~~~~d~~~v~v~~~~~~~~~~~~F~FD~VF~~~asQ~eVf~~~v~plV~~ 90 (614)
..++|||+||+||+.+.+... ..++.+. ...+...+.+ ..+.|.||+||+++++|++||+.++.|+|++
T Consensus 20 ~~~~VrV~vRvRP~~~~e~~~~~~~v~~~--~~~~~~~~~~--------~~~~F~FD~Vf~~~~sQ~~Vy~~~~~plv~~ 89 (344)
T 3dc4_A 20 KLSAVRIAVREAPYRQFLGRREPSVVQFP--PWSDGKSLIV--------DQNEFHFDHAFPATISQDEMYQALILPLVDK 89 (344)
T ss_dssp CCSEEEEEEEECCCC-------CCSEECC--SSSCSSEEEE--------TTEEEECSEEECTTCCHHHHHHHHTHHHHHH
T ss_pred CCCCeEEEEECCCCCcccccCCceEEEec--CCCCCceEEe--------cCcEEEcceEECCCCCHHHHHHhhccchhhH
Confidence 358999999999998776433 3344332 2222233322 2478999999999999999999999999999
Q ss_pred HhcCCceEEEeeccCCCCcceEeecCC------CCcchhHHHHHHHHhhccc------cCceEEEEEEEEecceeccccC
Q 035971 91 VFNGINATIVACGAKGSGKTRVIQGSY------EEPGLAALAVDEILSISEK------MGKSITISFYEIFQDHVYDLLD 158 (614)
Q Consensus 91 vl~G~N~tI~aYGqTGSGKTyTm~G~~------~~~GLipral~~LF~~~~~------~~~sV~vS~~EIYnE~V~DLL~ 158 (614)
+|+|||+||||||||||||||||+|+. +++|||||++++||+.+.. ..+.|++||+|||||+|+|||+
T Consensus 90 ~l~G~N~tifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra~~~LF~~i~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~ 169 (344)
T 3dc4_A 90 LLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLG 169 (344)
T ss_dssp HHHTCCEEEEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHHHHHHHHHHHHSSSSCSSCCEEEEEEEEEESSCEEETTS
T ss_pred hhCCCceEEEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHHHHHHHHHHHhhhhccccceEEEEEEEEEeCCeeEEccC
Confidence 999999999999999999999999864 5689999999999998762 3478999999999999999998
Q ss_pred cccccceEEecCCCceEecCCeEEEcCCHHHHHHHHHHHHhcCcccccccCCCCCCceEEEEEEEeeccCccccceeEEE
Q 035971 159 PKQQEVQILENGQGKIQLKGLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVSPVSNFLPTGKMNFV 238 (614)
Q Consensus 159 ~~~~~l~i~ed~~~~~~v~gLtev~V~S~ee~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~I~v~~~~~~~~~skL~fV 238 (614)
+...... ....+.|++++.|.+.+|++.+|..|.++|++++|.+|..|||||+||+|++.+. ...|+|+||
T Consensus 170 ~~~~~~~------~~~~~~~~~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~---~~~skl~lV 240 (344)
T 3dc4_A 170 STPHMPM------VAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK---THHSRMNIV 240 (344)
T ss_dssp SCTTSBC------CSSTTTCSCCEECSSHHHHHHHHHHHHHTCC----------CCEEEEEEEEEECS---SCEEEEEEE
T ss_pred CCCCCcc------ccccccCceecccCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEec---CcEEEEEEE
Confidence 8654221 1233568999999999999999999999999999999999999999999999875 357999999
Q ss_pred eCCCccccccccCccchhhhhHHhhhhHHHHHHHHHHHhcCCCCccCCCChhhhhhhhccCCCceEEEEEEcCcC-----
Q 035971 239 DLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANESHVPYRESKLTRMLQESLGCKSKILMLTCLLPR----- 313 (614)
Q Consensus 239 DLAGsEr~~k~~~~g~~l~E~~~INkSL~aL~~vI~aL~~~~~~vPyRdSkLTrLLqdsLgGnskt~mI~~vsP~----- 313 (614)
|||||||..++++.|.+++|+..||+||++|++||.+|+.++.||||||||||+||||+||||++|+||+||||+
T Consensus 241 DLAGSEr~~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~~~hiPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ 320 (344)
T 3dc4_A 241 DLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLS 320 (344)
T ss_dssp ECCCCCCC-------------CCSCCHHHHHHHHHHHHHTTCSSCCGGGSHHHHHTTTTSSTTCEEEEEEEECCCGGGHH
T ss_pred ECCCCccccccccccchhHHHHHHhHhHHHHHHHHHHHhccCCcCCccccHHHHHHHHHhCCCCEEEEEEEeCCchhhHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -chhHHHHHHhHhhhhh
Q 035971 314 -SVSTTKTQTGSQMHSS 329 (614)
Q Consensus 314 -Tl~TL~~asr~~r~i~ 329 (614)
|++||+||+|+ ++..
T Consensus 321 ETlsTL~fA~ra-~~~~ 336 (344)
T 3dc4_A 321 ETLSTLRFGTSA-KAAA 336 (344)
T ss_dssp HHHHHHHHHHHH-HHHT
T ss_pred HHHHHHHHHHHH-hhcC
Confidence 99999999999 5544
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=100.00 E-value=2.6e-71 Score=640.03 Aligned_cols=316 Identities=26% Similarity=0.421 Sum_probs=250.9
Q ss_pred CCCCCCeEEEEEeC-----CCCChhhccCCcEEEeCCCC---CCCCeEEEEeCCCCCCCceeeEeeeeecCCCChHHHHh
Q 035971 10 LNISKKARVIAKIR-----GFADLEAESANWVCIQKPNG---EDSDSVTVSFGEQPSSRKECYKLDYCYEQNEGNGIIFA 81 (614)
Q Consensus 10 ~~~~~~VrV~vRvR-----P~~~~e~~~~~~v~v~~~~~---~d~~~v~v~~~~~~~~~~~~F~FD~VF~~~asQ~eVf~ 81 (614)
..+.+++||||||| |+...+.+....+.+..|.+ +..+.+++..........++|.||+||+++++|++||+
T Consensus 370 ~~il~~~rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~ 449 (715)
T 4h1g_A 370 AALKGNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNINNNFSNLRFLFDKIFEREQSNDLVFE 449 (715)
T ss_dssp SSSSCSEEEEEEECCCC-------------BCEEECCC-------CEEEEEEEETTEEEEEEEECSEEECSSCCHHHHGG
T ss_pred HHHHhcCeEEEEEeccccccccccccccccceeccCCCCCCCCCCCeEEEcCCCCCCCCCeEEEeceEeCCCCCHHHHHH
Confidence 34568999999999 44444444455666665543 44556777666666667899999999999999999998
Q ss_pred hhhHHHHHHHhcCCceEEEeeccCCCCcceEeecCCCCcchhHHHHHHHHhhccc-----cCceEEEEEEEEecceeccc
Q 035971 82 REVKPLISEVFNGINATIVACGAKGSGKTRVIQGSYEEPGLAALAVDEILSISEK-----MGKSITISFYEIFQDHVYDL 156 (614)
Q Consensus 82 ~~v~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~GLipral~~LF~~~~~-----~~~sV~vS~~EIYnE~V~DL 156 (614)
. +.|+|+++|+|||+||||||||||||||||+|+ ++|||||++++||+.+++ ..+.|+|||+|||||+|+||
T Consensus 450 ~-~~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~--~~Giipr~~~~lf~~~~~~~~~~~~~~v~~s~~Eiyne~i~DL 526 (715)
T 4h1g_A 450 E-LSQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHP--TNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDL 526 (715)
T ss_dssp G-THHHHHHHHTTCCEEEEEESSTTSSHHHHHHCT--TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEES
T ss_pred H-HHHHHHHHhCCceEEEEccCCCCCchhhccCCC--CCCcHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEECCEEEEC
Confidence 5 679999999999999999999999999999994 689999999999998763 45789999999999999999
Q ss_pred cCccc---ccceEEec-CCCceEecCCeEEEcCCHHHHHHHHHHHHhcCcccccccCCCCCCceEEEEEEEeeccC---c
Q 035971 157 LDPKQ---QEVQILEN-GQGKIQLKGLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVSPVSN---F 229 (614)
Q Consensus 157 L~~~~---~~l~i~ed-~~~~~~v~gLtev~V~S~ee~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~I~v~~~~~---~ 229 (614)
|++.. ..+.++++ ..++++|.||+++.|.|.+|++.+|..|.++|++++|.+|..|||||+||+|+|.+.+. .
T Consensus 527 l~~~~~~~~~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~~~~~~g~~~r~~~~t~~n~~ssRSH~i~~i~~~~~~~~~~~ 606 (715)
T 4h1g_A 527 LNPKIDPNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGYNSLTKE 606 (715)
T ss_dssp SSCCCCTTCCCCEEEETTTTEEEETTCCCEECSCHHHHHHHHHHHHCC----------CGGGSEEEEEEEEEEEETTTCC
T ss_pred CCCCCCCCCcceeEEecCCCCEEEeCCEEEEcCCHHHHHHHHHHHHhccCcccccccCccccccEEEEEEEEEEecCCCC
Confidence 98753 34666654 46679999999999999999999999999999999999999999999999999987654 3
Q ss_pred cccceeEEEeCCCccccccccCccchhhhhHHhhhhHHHHHHHHHHHhc-CCCCccCCCChhhhhhhhccCCCceEEEEE
Q 035971 230 LPTGKMNFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNA-NESHVPYRESKLTRMLQESLGCKSKILMLT 308 (614)
Q Consensus 230 ~~~skL~fVDLAGsEr~~k~~~~g~~l~E~~~INkSL~aL~~vI~aL~~-~~~~vPyRdSkLTrLLqdsLgGnskt~mI~ 308 (614)
...|+|+|||||||||..++++.|.+++|+..||+||++|++||.+|+. +..|||||+|||||||||+|||||+|+|||
T Consensus 607 ~~~~~l~lvDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~al~~~~~~~vpyR~SkLT~lL~~slggn~~t~~i~ 686 (715)
T 4h1g_A 607 SSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNSKLTYLLKHSLGGNSKTLMFV 686 (715)
T ss_dssp EEEEEEEEEECCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHCSCCCCCGGGCHHHHHTGGGTSTTCEEEEEE
T ss_pred EeEEEEEEEeCCCcccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCccCHHHHHHHhhcCCCceEEEEE
Confidence 4579999999999999999999999999999999999999999999975 558999999999999999999999999999
Q ss_pred EcCcC------chhHHHHHHhHhhhhh
Q 035971 309 CLLPR------SVSTTKTQTGSQMHSS 329 (614)
Q Consensus 309 ~vsP~------Tl~TL~~asr~~r~i~ 329 (614)
||||+ |++||+||+|+ +.|+
T Consensus 687 ~isp~~~~~~et~~tL~fa~r~-~~i~ 712 (715)
T 4h1g_A 687 NISPLTKDLNETINSLRFATKV-NNTR 712 (715)
T ss_dssp EECCBGGGHHHHHHHHHHHHHH-CC--
T ss_pred EECCChhhHHHHHHHHHHHHHh-ccce
Confidence 99999 99999999999 8776
No 29
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.4e-26 Score=234.43 Aligned_cols=265 Identities=12% Similarity=0.090 Sum_probs=183.8
Q ss_pred CCCCCCCCCCCCCeEEEEEeCCCC-ChhhccCCcEEEeCCCCCCCCeEEEEeCCCCCCCceeeEeeeeecCCCChH--HH
Q 035971 3 RTKADTGLNISKKARVIAKIRGFA-DLEAESANWVCIQKPNGEDSDSVTVSFGEQPSSRKECYKLDYCYEQNEGNG--II 79 (614)
Q Consensus 3 r~~~~~~~~~~~~VrV~vRvRP~~-~~e~~~~~~v~v~~~~~~d~~~v~v~~~~~~~~~~~~F~FD~VF~~~asQ~--eV 79 (614)
|.-+++.++++|+||||||+||.. + ..|. +.-+. ..+++ .. ..+.|.||+||++++.|+ +|
T Consensus 13 RkL~NsI~ELKGnIRVFcrvrp~~~p-----~~~~-v~y~~----~~I~v--~~----~~k~f~FDRVf~p~s~Qe~~~v 76 (298)
T 2o0a_A 13 RRLENSIIEQKGTMRCYAYVMEQNLP-----ENLL-FDYEN----GVITQ--GL----SEHVYKFNRVIPHLKVSEDKFF 76 (298)
T ss_dssp HHHHHHHHHHHTCCEEEEEECGGGSC-----TTEE-EETTT----TEEEE--TT----TCCEEECSEEEETTTSCHHHHH
T ss_pred HHHHhHHHHhhCceEEEEEeccccCC-----ccce-eecCc----cceee--cC----CCceEEeeeEECccccccHHHH
Confidence 455667788999999999999954 3 2232 32221 12333 22 237999999999999999 99
Q ss_pred HhhhhHHHHHHHhc-CCceEEEeeccCCCCcceEeecCCCCcchhHHHHHHHHhhccc---cCceEEEEEEEEe-cceec
Q 035971 80 FAREVKPLISEVFN-GINATIVACGAKGSGKTRVIQGSYEEPGLAALAVDEILSISEK---MGKSITISFYEIF-QDHVY 154 (614)
Q Consensus 80 f~~~v~plV~~vl~-G~N~tI~aYGqTGSGKTyTm~G~~~~~GLipral~~LF~~~~~---~~~sV~vS~~EIY-nE~V~ 154 (614)
|+ .+.++|+.+++ |||+||||||||||||| ||++..+|...+. +.|+++++|+||| ||.++
T Consensus 77 f~-E~~~~i~scLd~GyNvcIfSyGQTGsGKT-------------~ral~q~f~~~~~~~~~~Y~~tlq~veLy~Ne~~~ 142 (298)
T 2o0a_A 77 TQ-EYSVYHDMCLNQKKNFNLISLSTTPHGSL-------------RESLIKFLAEKDTIYQKQYVITLQFVFLSDDEFSQ 142 (298)
T ss_dssp HH-TTHHHHHHHHHTTCCEEEEEECSSCCHHH-------------HHHHHHHHHSTTSHHHHHEEEEEEEEEEECC-CEE
T ss_pred HH-HHHHHHHHHHhCCCceEEEEECCCCCCcc-------------HHHHHHHHHHhhhhcccceEEEEEEEEEecCCchH
Confidence 98 59999999999 99999999999999999 9999999999865 8899999999999 99999
Q ss_pred cccCc--ccccceEEecCCCceEecCCeEEEcCC-HHHHHHHHHHHHhcCcccccccCCCCCCceEEEEEEEeeccC---
Q 035971 155 DLLDP--KQQEVQILENGQGKIQLKGLSQVPVKS-ISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVSPVSN--- 228 (614)
Q Consensus 155 DLL~~--~~~~l~i~ed~~~~~~v~gLtev~V~S-~ee~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~I~v~~~~~--- 228 (614)
|||.. ....+.|+.+..+...+.|++.+.|.+ .+|+..++..+.. +..+ .+.-.|+.+.+...+.
T Consensus 143 DLL~~~~~~~k~eIk~~~~g~~iv~~s~~i~V~~~~edv~~~~~~~~~------~~~~---~~gi~i~k~~~~~~~~~~~ 213 (298)
T 2o0a_A 143 DMLLDYSHNDKDSIKLKFEKHSISLDSKLVIIENGLEDLPLNFSCDEH------PNLP---HSGMGIIKVQFFPRDSKSD 213 (298)
T ss_dssp ETTSCCC------CEEEECSSCEEEESCCEEESSGGGGSCTTTTCC----------------CEEEEEEEEEEESCC---
T ss_pred HhcCCCCCCCcceEEecCCCCEEecccEEEEccccHHHHHHHhhcccc------cccC---CCCceEEEEEEecCccccc
Confidence 99963 223567888889999999999999999 8888777621111 1111 1345667777766332
Q ss_pred ---ccccceeEEEeCCCccccccccCccchhhhhHHhhhhHHHHHHHHHHHhcCCCCccCCCChhhhhhhhccCCCceEE
Q 035971 229 ---FLPTGKMNFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANESHVPYRESKLTRMLQESLGCKSKIL 305 (614)
Q Consensus 229 ---~~~~skL~fVDLAGsEr~~k~~~~g~~l~E~~~INkSL~aL~~vI~aL~~~~~~vPyRdSkLTrLLqdsLgGnskt~ 305 (614)
....--+.|+.+.... ++..|.+ ++..+ .+-.|+++-+|+--|- ..+.+
T Consensus 214 ~~~~~~~~d~yf~e~~~~~--------------------~~~~l~~---~~~~~----~~~~spi~~il~~ll~-~tks~ 265 (298)
T 2o0a_A 214 GNNDPVPVDFYFIELNNLK--------------------SIEQFDK---SIFKK----ESCETPIALVLKKLIS-DTKSF 265 (298)
T ss_dssp ----CCCEEEEEEEECSHH--------------------HHHHHHH---HHHTC-----CCCSHHHHHHHHHHH-HSBCE
T ss_pred ccCCCCceEEEEEEeCCHH--------------------HHHHHHh---hcccc----cccCCcHHHHHHHHHh-cCcce
Confidence 1122346666654422 1223333 22222 3456888888887664 46778
Q ss_pred EEEEcCcC--chhHHHHHHhHhhhhhcCCCcc
Q 035971 306 MLTCLLPR--SVSTTKTQTGSQMHSSTKKATG 335 (614)
Q Consensus 306 mI~~vsP~--Tl~TL~~asr~~r~i~nk~~~~ 335 (614)
+++++..+ .-..|.+++++ ..+.|.+..+
T Consensus 266 ~~~~l~~~~~~~~lL~~s~~i-~~~~~~~~~~ 296 (298)
T 2o0a_A 266 FLLNLNDSKNVNKLLTISEEV-QTQLCKRKKK 296 (298)
T ss_dssp EEEEECCGGGHHHHHHHHHHH-HHHTC-----
T ss_pred EEEEecCCCchhHHHHHHHHh-hcccCccccc
Confidence 89999886 55689999999 8888765543
No 30
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.88 E-value=1.5e-23 Score=183.40 Aligned_cols=78 Identities=32% Similarity=0.475 Sum_probs=72.8
Q ss_pred HHhhhhHHHHHHHHHHHhcC-CCCccCCCChhhhhhhhccCCCceEEEEEEcCcC------chhHHHHHHhHhhhhhcCC
Q 035971 260 TKVNKSIYTLFNVVYALNAN-ESHVPYRESKLTRMLQESLGCKSKILMLTCLLPR------SVSTTKTQTGSQMHSSTKK 332 (614)
Q Consensus 260 ~~INkSL~aL~~vI~aL~~~-~~~vPyRdSkLTrLLqdsLgGnskt~mI~~vsP~------Tl~TL~~asr~~r~i~nk~ 332 (614)
.+||+||++|++||.+|+.+ ..||||||||||+||||+||||++|+||+||||+ |++||+||+|+ +.|++++
T Consensus 2 ~~IN~SL~~Lg~vI~aL~~~~~~hvPyRdSkLT~lL~dsLgGnskt~mi~~vsp~~~~~~ETl~TL~fA~ra-k~i~~~~ 80 (100)
T 2kin_B 2 KNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRA-KTIKNTV 80 (100)
T ss_dssp CBSSHHHHHHHHHHHHHHHTCCSSCCGGGCHHHHHTHHHHHSSEEEEEEEEECCBGGGHHHHHHHHHHHHHH-HTCEEEE
T ss_pred CcchHHHHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHhcCCCceeEEEEeCcccchHHHHHHHHHHHHHH-HhccCcc
Confidence 57999999999999999887 6899999999999999999999999999999999 99999999999 9999988
Q ss_pred Cccccc
Q 035971 333 ATGVAS 338 (614)
Q Consensus 333 ~~~~~~ 338 (614)
..|...
T Consensus 81 ~~n~~~ 86 (100)
T 2kin_B 81 SVNLEL 86 (100)
T ss_dssp CCEEEC
T ss_pred eeccCC
Confidence 766543
No 31
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.84 E-value=1.4e-21 Score=176.19 Aligned_cols=76 Identities=34% Similarity=0.493 Sum_probs=70.9
Q ss_pred hhhHHHHHHHHHHHhcCC-CCccCCCChhhhhhhhccCCCceEEEEEEcCcC------chhHHHHHHhHhhhhhcCCCcc
Q 035971 263 NKSIYTLFNVVYALNANE-SHVPYRESKLTRMLQESLGCKSKILMLTCLLPR------SVSTTKTQTGSQMHSSTKKATG 335 (614)
Q Consensus 263 NkSL~aL~~vI~aL~~~~-~~vPyRdSkLTrLLqdsLgGnskt~mI~~vsP~------Tl~TL~~asr~~r~i~nk~~~~ 335 (614)
|+||.+|++||.+|+.+. .||||||||||+||||+|||||+|+||+||+|+ |++||+||+|+ +.|++++..+
T Consensus 1 N~SL~~Lg~vi~aL~~~~~~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~ra-k~i~n~~~~n 79 (117)
T 3kin_B 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRA-KTIKNTVSVN 79 (117)
T ss_dssp CCHHHHHHHHHHHHHHSCCSSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHH-TTCEEEECCC
T ss_pred CCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHh-CcccCCceec
Confidence 799999999999998874 799999999999999999999999999999999 99999999999 9999998877
Q ss_pred cccc
Q 035971 336 VASV 339 (614)
Q Consensus 336 ~~~~ 339 (614)
....
T Consensus 80 ~~~~ 83 (117)
T 3kin_B 80 LELT 83 (117)
T ss_dssp BCCC
T ss_pred CcCC
Confidence 6543
No 32
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=98.98 E-value=4.2e-10 Score=102.18 Aligned_cols=51 Identities=20% Similarity=0.346 Sum_probs=45.6
Q ss_pred HhhhccCCHHhhccCCCCCHHHHHHHHHHHHhCCCCCCCHHhhhh-cCCCHHHHHHH
Q 035971 549 LKLLNTGGKEDLKRLKGIGEKRASYILELREESPEPFKNLDDLKD-IGLSAKQIKGM 604 (614)
Q Consensus 549 ~~~lN~A~~~~L~~l~gig~~~A~~Ii~~R~~~gg~f~~~~dL~~-~gl~~~~~~~~ 604 (614)
..+||+|+.+||++||||||++|++|| +| |||+++|||.+ .||+.++.+.+
T Consensus 54 kIniNtA~~~eL~~LpGiGp~~A~~II----~~-GpF~svedL~~V~GIg~k~~e~l 105 (134)
T 1s5l_U 54 KIDLNNTNIAAFIQYRGLYPTLAKLIV----KN-APYESVEDVLNIPGLTERQKQIL 105 (134)
T ss_dssp SEETTTSCGGGGGGSTTCTHHHHHHHH----HT-CCCSSGGGGGGCTTCCHHHHHHH
T ss_pred eeeCcccCHHHHHHCCCCCHHHHHHHH----Hc-CCCCCHHHHHhCCCCCHHHHHHH
Confidence 356999999999999999999999999 46 68999999999 79999876655
No 33
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=98.91 E-value=7.8e-10 Score=96.05 Aligned_cols=52 Identities=19% Similarity=0.350 Sum_probs=47.6
Q ss_pred hhhccCCHHhhccCCCCCHHHHHHHHHHHHhCCCCCCCHHhhhh-cCCCHHHHHHHHH
Q 035971 550 KLLNTGGKEDLKRLKGIGEKRASYILELREESPEPFKNLDDLKD-IGLSAKQIKGMMK 606 (614)
Q Consensus 550 ~~lN~A~~~~L~~l~gig~~~A~~Ii~~R~~~gg~f~~~~dL~~-~gl~~~~~~~~~~ 606 (614)
..||+|+.++|+.|||||+++|++||+ + |||++++||++ .||+++.++++..
T Consensus 18 vdiNtAs~~eL~~lpGIG~~~A~~IV~----~-GpF~s~edL~~V~Gig~~~~e~l~~ 70 (97)
T 3arc_U 18 IDLNNTNIAAFIQYRGLYPTLAKLIVK----N-APYESVEDVLNIPGLTERQKQILRE 70 (97)
T ss_dssp EETTTSCGGGGGGSTTCTTHHHHHHHH----H-CCCSSGGGGGGCTTCCHHHHHHHHH
T ss_pred eeCCcCCHHHHhHCCCCCHHHHHHHHH----c-CCCCCHHHHHhccCCCHHHHHHHHH
Confidence 469999999999999999999999999 3 57999999999 8999999888754
No 34
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=98.91 E-value=8e-10 Score=106.75 Aligned_cols=46 Identities=30% Similarity=0.613 Sum_probs=41.3
Q ss_pred HHHHhhhc-----cCCHHhhccCCCCCHHHHHHHHHHHHhCCCCCCCHHhhhh
Q 035971 546 QEYLKLLN-----TGGKEDLKRLKGIGEKRASYILELREESPEPFKNLDDLKD 593 (614)
Q Consensus 546 ~~~~~~lN-----~A~~~~L~~l~gig~~~A~~Ii~~R~~~gg~f~~~~dL~~ 593 (614)
+.|+.|+| +|+.++|+.|||||+++|++||+||++ |||++++||++
T Consensus 115 ~~fv~f~n~a~pITA~~~eL~~LpGIG~k~A~~IIeyRe~--G~F~s~eDL~~ 165 (205)
T 2i5h_A 115 KKYVDFFNKADSITTRMHQLELLPGVGKKMMWAIIEERKK--RPFESFEDIAQ 165 (205)
T ss_dssp HHHHHHHC--CCBCSSSBGGGGSTTCCHHHHHHHHHHHHH--SCCCSHHHHHH
T ss_pred hhhhhhccccCCccCCHHHHhcCCCcCHHHHHHHHHHHhc--CCCCCHHHHHH
Confidence 45566677 999999999999999999999999999 47999999977
No 35
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=98.91 E-value=1.8e-09 Score=93.96 Aligned_cols=69 Identities=35% Similarity=0.590 Sum_probs=59.8
Q ss_pred chhhhHHHHHhhhccCCHHhhccCCCCCHHHHHHHHHHHHhCCCCCCCHHhhhh-cCCCHHHHHHHHHHHh
Q 035971 540 MKNSLVQEYLKLLNTGGKEDLKRLKGIGEKRASYILELREESPEPFKNLDDLKD-IGLSAKQIKGMMKKEM 609 (614)
Q Consensus 540 ~~~~l~~~~~~~lN~A~~~~L~~l~gig~~~A~~Ii~~R~~~gg~f~~~~dL~~-~gl~~~~~~~~~~~~~ 609 (614)
|.....+.....||+|+.++|..|||||+++|++|++||+.+ |+|.+++||.+ .|++.+.+++|++..+
T Consensus 22 ~~~~~~~~~~i~iN~a~~~~L~~ipGIG~~~A~~Il~~r~~~-g~f~s~edL~~v~Gig~k~~~~l~~~g~ 91 (98)
T 2edu_A 22 LLAHGRQKILDLLNEGSARDLRSLQRIGPKKAQLIVGWRELH-GPFSQVEDLERVEGITGKQMESFLKANI 91 (98)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHSTTCCHHHHHHHHHHHHHH-CCCSSGGGGGGSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHhccCeehhhCCHHHHHHCCCCCHHHHHHHHHHHHhc-CCcCCHHHHHhCCCCCHHHHHHHHHCcC
Confidence 333444556778999999999999999999999999999987 46999999999 6999999999988654
No 36
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=98.69 E-value=1.3e-08 Score=84.02 Aligned_cols=52 Identities=31% Similarity=0.466 Sum_probs=48.1
Q ss_pred hhhccCCHHhhccCCCCCHHHHHHHHHHHHhCCCCCCCHHhhhh-cCCCHHHHHHHHH
Q 035971 550 KLLNTGGKEDLKRLKGIGEKRASYILELREESPEPFKNLDDLKD-IGLSAKQIKGMMK 606 (614)
Q Consensus 550 ~~lN~A~~~~L~~l~gig~~~A~~Ii~~R~~~gg~f~~~~dL~~-~gl~~~~~~~~~~ 606 (614)
.+||+|+.++|..|||||+++|++|++|| +|.+++||.+ .|++.+.++++..
T Consensus 19 idiN~a~~~~L~~ipGIG~~~A~~Il~~r-----~~~s~~eL~~v~Gig~k~~~~i~~ 71 (75)
T 2duy_A 19 VSLNEASLEELMALPGIGPVLARRIVEGR-----PYARVEDLLKVKGIGPATLERLRP 71 (75)
T ss_dssp EETTTCCHHHHTTSTTCCHHHHHHHHHTC-----CCSSGGGGGGSTTCCHHHHHHHGG
T ss_pred cChhhCCHHHHHhCCCCCHHHHHHHHHHc-----ccCCHHHHHhCCCCCHHHHHHHHH
Confidence 45999999999999999999999999999 5999999999 8999999988753
No 37
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=98.29 E-value=5.1e-07 Score=104.31 Aligned_cols=59 Identities=24% Similarity=0.306 Sum_probs=53.0
Q ss_pred HHHHhhhccCCHHhhccCCCCCHHHHHHHHHHHHhCCCCCCCHHhhhh-cCCCHHHHHHHH
Q 035971 546 QEYLKLLNTGGKEDLKRLKGIGEKRASYILELREESPEPFKNLDDLKD-IGLSAKQIKGMM 605 (614)
Q Consensus 546 ~~~~~~lN~A~~~~L~~l~gig~~~A~~Ii~~R~~~gg~f~~~~dL~~-~gl~~~~~~~~~ 605 (614)
...-..||+|+.++|+.|||||+.+|++||+||+++ |+|++.+||.+ .||+++.++++.
T Consensus 496 n~~gVdiNtAs~~~L~~v~GiG~~~A~~Iv~yR~~~-G~f~sr~~L~~V~giG~k~~ekl~ 555 (785)
T 3bzc_A 496 NAVGVDVNTASAALLARISGLNSTLAQNIVAHRDAN-GAFRTRDELKKVSRLGEKTFEQAA 555 (785)
T ss_dssp HHHCEETTTCCHHHHHTSTTCCHHHHHHHHHHHHHH-CCCSSGGGGGGSTTCCHHHHHHHG
T ss_pred cccccccCcCCHHHHhhcCCCCHHHHHHHHHHHHhc-CCCCCHHHHHhcCCCCHHHHHHhh
Confidence 334467999999999999999999999999999998 56999999999 899999988864
No 38
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=97.73 E-value=1.5e-05 Score=94.37 Aligned_cols=54 Identities=20% Similarity=0.202 Sum_probs=48.4
Q ss_pred hhccC-----CHHhhccCCCCCHHHHHHHHHHHHhCCCCCCCHHhhhh-cCCCHHHHHHH
Q 035971 551 LLNTG-----GKEDLKRLKGIGEKRASYILELREESPEPFKNLDDLKD-IGLSAKQIKGM 604 (614)
Q Consensus 551 ~lN~A-----~~~~L~~l~gig~~~A~~Ii~~R~~~gg~f~~~~dL~~-~gl~~~~~~~~ 604 (614)
.||+| +...|+.|+|||+.+|++||+||+..+|+|++.+||.+ .||+++..++.
T Consensus 705 diNtA~~~~~s~~lL~~v~GlGp~kA~~Iv~~r~~~~G~f~sr~~L~~v~~iG~k~fe~~ 764 (1030)
T 3psf_A 705 EVNKATDNNYYASALKYISGFGKRKAIDFLQSLQRLNEPLLARQQLITHNILHKTIFMNS 764 (1030)
T ss_dssp EHHHHHTCHHHHTTGGGSTTCCHHHHHHHHHHHHHTCSCCCCTTHHHHTTSSCHHHHHHH
T ss_pred cHHHhhcCcCCHHHHhhCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHhcCCccHHHHHhc
Confidence 38999 89999999999999999999999554478999999999 78999988765
No 39
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=97.60 E-value=2.6e-05 Score=93.82 Aligned_cols=53 Identities=21% Similarity=0.224 Sum_probs=47.4
Q ss_pred hccC-----CHHhhccCCCCCHHHHHHHHHHHHhCCCCCCCHHhhhh-cCCCHHHHHHH
Q 035971 552 LNTG-----GKEDLKRLKGIGEKRASYILELREESPEPFKNLDDLKD-IGLSAKQIKGM 604 (614)
Q Consensus 552 lN~A-----~~~~L~~l~gig~~~A~~Ii~~R~~~gg~f~~~~dL~~-~gl~~~~~~~~ 604 (614)
||+| +...|+.|+|||+.+|++||+||++.+|+|++.+||.+ .||+++..++.
T Consensus 703 iNtA~~~~~s~~lL~~v~GlGp~kA~~Iv~~r~~~~G~f~sr~~L~~v~~iG~k~fe~~ 761 (1219)
T 3psi_A 703 VNKATDNNYYASALKYISGFGKRKAIDFLQSLQRLNEPLLARQQLITHNILHKTIFMNS 761 (1219)
T ss_dssp HHHHTTCHHHHTTGGGSTTCCHHHHHHHHHHHHHHCSCCCCTTHHHHTTCSCHHHHHHH
T ss_pred HHHhhcCcCCHHHHHhCCCCCHHHHHHHHHHHHHhCCCCCCHHHHhhCCCccHHHHHhc
Confidence 8999 79999999999999999999999543478999999999 88999988764
No 40
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=96.93 E-value=0.00056 Score=71.94 Aligned_cols=52 Identities=23% Similarity=0.392 Sum_probs=46.4
Q ss_pred cCCHHhhccCCCCCHHHHHHHHHHHHhCCCCCCCHHhh----------hh-cCCCHHHHHHHHHH
Q 035971 554 TGGKEDLKRLKGIGEKRASYILELREESPEPFKNLDDL----------KD-IGLSAKQIKGMMKK 607 (614)
Q Consensus 554 ~A~~~~L~~l~gig~~~A~~Ii~~R~~~gg~f~~~~dL----------~~-~gl~~~~~~~~~~~ 607 (614)
-++.++|..|||||+++|+.|.+|++ . |.|..+++| .+ .|++++++++|..+
T Consensus 53 i~~~~~l~~lpGIG~~~A~kI~E~l~-t-G~~~~le~l~~~~p~l~ll~~v~GiG~k~a~~l~~~ 115 (335)
T 2bcq_A 53 VTSYQEACSIPGIGKRMAEKIIEILE-S-GHLRKLDHISESVPVLELFSNIWGAGTKTAQMWYQQ 115 (335)
T ss_dssp CCCHHHHHTSTTCCHHHHHHHHHHHH-S-SSCGGGGGCCTTHHHHHHHHTSTTCCHHHHHHHHHT
T ss_pred ccCHHHHhcCCCccHHHHHHHHHHHH-c-CCchHHHHHhhhhHHHHHHhcCCCcCHHHHHHHHHc
Confidence 56677899999999999999999998 4 469999998 68 99999999999765
No 41
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=96.14 E-value=0.0027 Score=66.67 Aligned_cols=53 Identities=19% Similarity=0.322 Sum_probs=44.2
Q ss_pred ccCCHHhhccCCCCCHHHHHHHHHHHHhCCCCC------------CCHHhhhh-cCCCHHHHHHHHHH
Q 035971 553 NTGGKEDLKRLKGIGEKRASYILELREESPEPF------------KNLDDLKD-IGLSAKQIKGMMKK 607 (614)
Q Consensus 553 N~A~~~~L~~l~gig~~~A~~Ii~~R~~~gg~f------------~~~~dL~~-~gl~~~~~~~~~~~ 607 (614)
.-++.++|..|||||+++|+.|.+|++.. .| ..+.+|.+ .|++++++++|..+
T Consensus 52 ~i~~~~~l~~LpGIG~~~A~kI~E~l~tG--~~~~le~l~~~~~~~~l~~l~~V~GiGpk~a~~l~~~ 117 (335)
T 2fmp_A 52 KIKSGAEAKKLPGVGTKIAEKIDEFLATG--KLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDE 117 (335)
T ss_dssp CCCCHHHHHTSTTCCHHHHHHHHHHHHHS--SCHHHHHHHHCHHHHHHHHHTTSTTCCHHHHHHHHHT
T ss_pred cccCHHHHhcCCCCcHHHHHHHHHHHHhC--CcHHHHHHHcccchhHHHHHhCCCCCCHHHHHHHHHc
Confidence 35677889999999999999999999843 55 45666777 89999999999775
No 42
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=96.07 E-value=0.0038 Score=66.19 Aligned_cols=53 Identities=19% Similarity=0.300 Sum_probs=45.7
Q ss_pred ccCCHHhhccCCCCCHHHHHHHHHHHHhCCCCCCCHHhhh------------h-cCCCHHHHHHHHHH
Q 035971 553 NTGGKEDLKRLKGIGEKRASYILELREESPEPFKNLDDLK------------D-IGLSAKQIKGMMKK 607 (614)
Q Consensus 553 N~A~~~~L~~l~gig~~~A~~Ii~~R~~~gg~f~~~~dL~------------~-~gl~~~~~~~~~~~ 607 (614)
.-++.++|..|||||+++|+.|.+|++. |.|..+++|. + .|++++++++|..+
T Consensus 56 ~i~~~~~l~~lpGIG~~~A~kI~E~l~t--G~~~~le~L~~d~~~~~l~~l~~I~GvG~kta~~l~~~ 121 (360)
T 2ihm_A 56 PVASLSQLHGLPYFGEHSTRVIQELLEH--GTCEEVKQVRCSERYQTMKLFTQVFGVGVKTANRWYQE 121 (360)
T ss_dssp CCCSGGGGTTCTTCCHHHHHHHHHHHHH--SCCHHHHHHHHSHHHHHHHHHHTSTTCCHHHHHHHHHT
T ss_pred ccCCHHHHhcCCCCCHHHHHHHHHHHHc--CChHHHHHHhcccchHHHHHHhCCCCCCHHHHHHHHHc
Confidence 5567778999999999999999999984 3699888764 5 89999999999765
No 43
>3ci0_K Pseudopilin GSPK; general secretory pathway, pseudopilus, type 4 pilin biogene methylation, protein transport; 2.20A {Escherichia coli} SCOP: a.60.16.1 a.60.16.1 d.24.1.6
Probab=95.32 E-value=0.0039 Score=64.41 Aligned_cols=52 Identities=17% Similarity=0.179 Sum_probs=34.8
Q ss_pred hhhccCCH---HhhccC--CCCCHHHHHHHHHHHHhCCCCCCCHHhhhh----cCCCHHHHHH
Q 035971 550 KLLNTGGK---EDLKRL--KGIGEKRASYILELREESPEPFKNLDDLKD----IGLSAKQIKG 603 (614)
Q Consensus 550 ~~lN~A~~---~~L~~l--~gig~~~A~~Ii~~R~~~gg~f~~~~dL~~----~gl~~~~~~~ 603 (614)
.+||||+. +-|..| ||||+..|++||+||... | |.+++||.+ .|++.+...+
T Consensus 188 iNiNTa~~~~a~vL~al~~~~i~~~~A~~ii~~R~~~-g-f~~v~~~~~~~~~~g~~~~~~~~ 248 (298)
T 3ci0_K 188 ININTLDVTQSVILEALFDPWLSPVQARALLQQRPAK-G-WEDVDQFLAQPLLADVDERTKKQ 248 (298)
T ss_dssp EETTTCCGGGTHHHHHHTC-------CCHHHHTCCTT-C-CSCHHHHHTSGGGSSSCHHHHHH
T ss_pred eeccccChhhHHHHHHhcCCCCCHHHHHHHHHhcccC-C-CCCHHHHHhhhcccCCChhhhhh
Confidence 57999974 458888 999999999999999855 5 999999987 4676654443
No 44
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=95.31 E-value=0.02 Score=48.13 Aligned_cols=57 Identities=14% Similarity=0.157 Sum_probs=42.2
Q ss_pred HHhhhccCCHHhhccCCCCCHHHHHHHHHHHHhCCCCC-----CCHHhhhh-cCCCHHHHHHHHHHH
Q 035971 548 YLKLLNTGGKEDLKRLKGIGEKRASYILELREESPEPF-----KNLDDLKD-IGLSAKQIKGMMKKE 608 (614)
Q Consensus 548 ~~~~lN~A~~~~L~~l~gig~~~A~~Ii~~R~~~gg~f-----~~~~dL~~-~gl~~~~~~~~~~~~ 608 (614)
.....|.+....|..|||||++.|++|+++- |. + .+.++|.+ .|++.+.+..++...
T Consensus 9 ~~~~~~~~~~~~L~~IpgIG~~~A~~Ll~~f---gs-l~~l~~a~~~eL~~i~GIG~~~a~~I~~~l 71 (89)
T 1z00_A 9 LEQDFVSRVTECLTTVKSVNKTDSQTLLTTF---GS-LEQLIAASREDLALCPGLGPQKARRLFDVL 71 (89)
T ss_dssp HHHHHHHHHHHHHTTSSSCCHHHHHHHHHHT---CB-HHHHHHCCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHcCCCCCHHHHHHHHHHC---CC-HHHHHhCCHHHHHhCCCCCHHHHHHHHHHH
Confidence 3345577778889999999999999999752 21 2 36778888 689998888876543
No 45
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=95.25 E-value=0.0031 Score=63.19 Aligned_cols=49 Identities=18% Similarity=0.402 Sum_probs=0.0
Q ss_pred ccCCHHhhccCCCCCHHHHHHHHHHHHhCCCCCCCHHhhh--------h-cCCCHHHHHHHHHH
Q 035971 553 NTGGKEDLKRLKGIGEKRASYILELREESPEPFKNLDDLK--------D-IGLSAKQIKGMMKK 607 (614)
Q Consensus 553 N~A~~~~L~~l~gig~~~A~~Ii~~R~~~gg~f~~~~dL~--------~-~gl~~~~~~~~~~~ 607 (614)
++|+..+|..|||||+++|.+|+++ | |.++++|. . .||+.+.+++|+..
T Consensus 10 ~~a~~~~L~~IpGIGpk~a~~Ll~~-----g-f~sve~L~~a~~~eL~~v~GIG~ktAe~I~~~ 67 (241)
T 1vq8_Y 10 AEEEYTELTDISGVGPSKAESLREA-----G-FESVEDVRGADQSALADVSGIGNALAARIKAD 67 (241)
T ss_dssp ----------------------------------------------------------------
T ss_pred cccchhHHhcCCCCCHHHHHHHHHc-----C-CCCHHHHHhCCHHHHHhccCCCHHHHHHHHHH
Confidence 5888899999999999999999976 3 77777776 6 68999998888654
No 46
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=94.97 E-value=0.0067 Score=49.81 Aligned_cols=53 Identities=15% Similarity=0.305 Sum_probs=37.6
Q ss_pred hhccCCHHhhccCCCCCHHHHHHHHHHHHhCCCCCC-----CHHhhhh-cCCCHHHHHHHHHH
Q 035971 551 LLNTGGKEDLKRLKGIGEKRASYILELREESPEPFK-----NLDDLKD-IGLSAKQIKGMMKK 607 (614)
Q Consensus 551 ~lN~A~~~~L~~l~gig~~~A~~Ii~~R~~~gg~f~-----~~~dL~~-~gl~~~~~~~~~~~ 607 (614)
..|.+....|..|||||++.|++|+++- |. +. +.++|.+ .|++++.+..++..
T Consensus 17 ~~~~~~~~~L~~I~gIG~~~A~~Ll~~f---gs-l~~l~~a~~eeL~~i~GIG~~~a~~I~~~ 75 (78)
T 1kft_A 17 RGSHMNTSSLETIEGVGPKRRQMLLKYM---GG-LQGLRNASVEEIAKVPGISQGLAEKIFWS 75 (78)
T ss_dssp ------CCGGGGCTTCSSSHHHHHHHHH---SC-HHHHHHCCHHHHTTSSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHhcCCCCCHHHHHHHHHHc---CC-HHHHHHCCHHHHHHCCCCCHHHHHHHHHH
Confidence 4566677789999999999999999873 22 33 6788888 68999988887653
No 47
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=94.95 E-value=0.016 Score=61.79 Aligned_cols=53 Identities=15% Similarity=0.211 Sum_probs=45.1
Q ss_pred ccCCHHhhccCCCCCHHHHHHHHHHHHhCCCCCCCHHhhh------------h-cCCCHHHHHHHHHH
Q 035971 553 NTGGKEDLKRLKGIGEKRASYILELREESPEPFKNLDDLK------------D-IGLSAKQIKGMMKK 607 (614)
Q Consensus 553 N~A~~~~L~~l~gig~~~A~~Ii~~R~~~gg~f~~~~dL~------------~-~gl~~~~~~~~~~~ 607 (614)
.-++.++|..|||||+++|+.|.++.+.. .+..+++|. + .|++++++++|..+
T Consensus 75 ~i~~~~~l~~lpGIG~~ia~kI~E~l~tG--~~~~le~l~~d~~~~~l~~l~~I~GvGpk~a~~ly~~ 140 (381)
T 1jms_A 75 PITSMKDTEGIPCLGDKVKSIIEGIIEDG--ESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRM 140 (381)
T ss_dssp CCCSGGGGTTCSSCCHHHHHHHHHHHHHS--SCHHHHHHHHCHHHHHHHHHHTSTTCCHHHHHHHHHT
T ss_pred cccCHHHHhcCCCCcHHHHHHHHHHHHcC--CcHHHHHHhcCcchhHHHHHHccCCCCHHHHHHHHHc
Confidence 45667789999999999999999999853 688888665 5 89999999999775
No 48
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=94.34 E-value=0.05 Score=45.88 Aligned_cols=67 Identities=13% Similarity=0.142 Sum_probs=48.0
Q ss_pred hhhHHHHHhhhccCCHHhhccCCCCCHHHHHHHHHHHHhCCC-CCCCHHhhhh-cCCCHHHHHHHHHHH
Q 035971 542 NSLVQEYLKLLNTGGKEDLKRLKGIGEKRASYILELREESPE-PFKNLDDLKD-IGLSAKQIKGMMKKE 608 (614)
Q Consensus 542 ~~l~~~~~~~lN~A~~~~L~~l~gig~~~A~~Ii~~R~~~gg-~f~~~~dL~~-~gl~~~~~~~~~~~~ 608 (614)
..+....-...|.+....|..|||||++.|++|+++-..... --.+.++|.+ .|++.+.+..++...
T Consensus 16 ~~~~~~~~~~~~~~~~~~L~~IpgIG~~~A~~Ll~~fgs~~~l~~as~~eL~~i~GIG~~~a~~I~~~l 84 (91)
T 2a1j_B 16 DLLMEKLEQDFVSRVTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVL 84 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHSSHHHHHSCCHHHHHTSSSCCSHHHHHHHHHH
T ss_pred HHHhhhccCCHHHHHHHHHHcCCCCCHHHHHHHHHHCCCHHHHHhCCHHHHHhCCCCCHHHHHHHHHHH
Confidence 345555566677778888999999999999999986410000 0236788888 689999888887654
No 49
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=94.14 E-value=0.017 Score=55.79 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=12.6
Q ss_pred hccCCHHhhccCCCCCHHHHHHHH
Q 035971 552 LNTGGKEDLKRLKGIGEKRASYIL 575 (614)
Q Consensus 552 lN~A~~~~L~~l~gig~~~A~~Ii 575 (614)
|-.++.++|.++||||+++|++|+
T Consensus 101 I~~~d~~~L~~vpGIG~K~A~rI~ 124 (191)
T 1ixr_A 101 LLEGDARLLTSASGVGRRLAERIA 124 (191)
T ss_dssp HHTTCHHHHTTSTTCCHHHHHHHH
T ss_pred HHhCCHHHHHhCCCCCHHHHHHHH
Confidence 444555555555555555555554
No 50
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=93.44 E-value=0.093 Score=41.99 Aligned_cols=25 Identities=36% Similarity=0.477 Sum_probs=11.5
Q ss_pred cCCHHhhccCCCCCHHHHHHHHHHH
Q 035971 554 TGGKEDLKRLKGIGEKRASYILELR 578 (614)
Q Consensus 554 ~A~~~~L~~l~gig~~~A~~Ii~~R 578 (614)
.|+.++|..+||||+++|+.|+.+.
T Consensus 42 ~a~~~~L~~i~Gig~~~a~~i~~~~ 66 (75)
T 1x2i_A 42 TASVAELMKVEGIGEKIAKEIRRVI 66 (75)
T ss_dssp HCCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred hCCHHHHhcCCCCCHHHHHHHHHHH
Confidence 3444444444444444444444444
No 51
>2hnh_A DNA polymerase III alpha subunit; DNA replication, nucleotidyltransferase, beta, PHP, transferase; HET: DNA; 2.30A {Escherichia coli} PDB: 2hqa_A*
Probab=93.36 E-value=0.091 Score=61.98 Aligned_cols=46 Identities=26% Similarity=0.447 Sum_probs=41.3
Q ss_pred hhccCCCCCHHHHHHHHHHHHhCCCC-CCCHHhhhh-cC---CCHHHHHHHHH
Q 035971 559 DLKRLKGIGEKRASYILELREESPEP-FKNLDDLKD-IG---LSAKQIKGMMK 606 (614)
Q Consensus 559 ~L~~l~gig~~~A~~Ii~~R~~~gg~-f~~~~dL~~-~g---l~~~~~~~~~~ 606 (614)
=|..|+|||+..|++||+.|+ +|| |++++||.. ++ ++.+.++.|++
T Consensus 834 gl~~Ikgvg~~~~~~Iv~~R~--~g~~f~s~~Df~~R~~~~~~~~~~le~Li~ 884 (910)
T 2hnh_A 834 GIGAIKGVGEGPIEAIIEARN--KGGYFRELFDLCARTDTKKLNRRVLEKLIM 884 (910)
T ss_dssp BGGGSTTCCHHHHHHHHHHHH--TTCCCSSHHHHTTSSCSSSSCHHHHHHHHH
T ss_pred hHHhcCCCCHHHHHHHHHHHh--cCCCCCCHHHHHHhccccCCCHHHHHHHHH
Confidence 477899999999999999998 378 999999998 64 89999999876
No 52
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=93.34 E-value=0.036 Score=54.45 Aligned_cols=47 Identities=19% Similarity=0.312 Sum_probs=26.6
Q ss_pred hccCCCCCHHHHHHHHHHHHhCCC-----CCCCHHhhhh-cCCCHHHHHHHHHH
Q 035971 560 LKRLKGIGEKRASYILELREESPE-----PFKNLDDLKD-IGLSAKQIKGMMKK 607 (614)
Q Consensus 560 L~~l~gig~~~A~~Ii~~R~~~gg-----~f~~~~dL~~-~gl~~~~~~~~~~~ 607 (614)
|.+++||||++|.+|++..... . --.+++.|.+ .||+.|.+++++..
T Consensus 90 L~sv~GIGpk~A~~Ils~~~~~-~l~~aI~~~d~~~L~~vpGIG~KtA~rIi~e 142 (212)
T 2ztd_A 90 LLSVSGVGPRLAMAALAVHDAP-ALRQVLADGNVAALTRVPGIGKRGAERMVLE 142 (212)
T ss_dssp HHTSTTCCHHHHHHHHHHSCHH-HHHHHHHTTCHHHHHTSTTCCHHHHHHHHHH
T ss_pred hcCcCCcCHHHHHHHHHhCCHH-HHHHHHHhCCHHHHhhCCCCCHHHHHHHHHH
Confidence 4556666666666666653221 0 0125666666 66666666666543
No 53
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=93.29 E-value=0.08 Score=63.97 Aligned_cols=47 Identities=34% Similarity=0.588 Sum_probs=41.9
Q ss_pred hccCCCCCHHHHHHHHHHHHhCCCCCCCHHhhhh-cC---CCHHHHHHHHHH
Q 035971 560 LKRLKGIGEKRASYILELREESPEPFKNLDDLKD-IG---LSAKQIKGMMKK 607 (614)
Q Consensus 560 L~~l~gig~~~A~~Ii~~R~~~gg~f~~~~dL~~-~g---l~~~~~~~~~~~ 607 (614)
|..|+|||+..|++||+.|++. |||++++||.. ++ ++.+.++.|++.
T Consensus 891 L~aIkgvg~~~~~~Iv~~R~~~-g~f~sl~Df~~Rv~~~~~nk~~le~Li~a 941 (1220)
T 2hpi_A 891 LSAVKNVGEMAARAILEERERG-GPFKSLGDFLKRLPEQVVNKRALESLVKA 941 (1220)
T ss_dssp STTSSSCCHHHHHHHHHHHHHS-CSCCSHHHHHHHSCTTTSCHHHHHHHHHH
T ss_pred hhhcCCCCHHHHHHHHHHHHhc-CCCCCHHHHHHhccccCCCHHHHHHHHhc
Confidence 5679999999999999999886 68999999988 66 899999999864
No 54
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=93.22 E-value=0.1 Score=53.77 Aligned_cols=254 Identities=13% Similarity=0.112 Sum_probs=139.4
Q ss_pred CCCCCCCCCCeEEEEEeCCCCChhhccCCcEEEeCCCCCCCCeEEEEeCCCCCCCceeeEeeeeecCCC-ChHHHHhhhh
Q 035971 6 ADTGLNISKKARVIAKIRGFADLEAESANWVCIQKPNGEDSDSVTVSFGEQPSSRKECYKLDYCYEQNE-GNGIIFAREV 84 (614)
Q Consensus 6 ~~~~~~~~~~VrV~vRvRP~~~~e~~~~~~v~v~~~~~~d~~~v~v~~~~~~~~~~~~F~FD~VF~~~a-sQ~eVf~~~v 84 (614)
.++..+.+|.||+|+=+-.-.- +.-+.|.-. .+ +|. ..+..+.|.|++|++.+. +-.+++...+
T Consensus 51 ENSIdElKG~IRcFAYi~~~~~-----p~~~~idY~----~~--~It----~~~~~~~y~FnRiIp~~~~~e~~~l~qE~ 115 (333)
T 4etp_B 51 ENSIIEQKGTMRVYAYVMEQNL-----PENLLFDYE----NG--VIT----QGLSEHVYKFNRVIPHLKVSEDCFFTQEY 115 (333)
T ss_dssp HHHHHHHHTCCEEEEEECCSSC-----CSSCEEETT----TT--EEE----C--CCCEEECSEEEETTTCCHHHHHHHTT
T ss_pred hhhHHHhcCcEEEEEEECcccC-----CccEEEecc----cc--eEe----ecCCcceEEEeeeechhhcchHHHHHHHH
Confidence 3445668899999999876221 223455432 11 232 113467999999997765 4566676799
Q ss_pred HHHHHHHh-cCCceEEEeeccCCCCcceEeecCCCCcchhHHHHHHHHhh--ccccCceEEEEEEEEecce-eccccCcc
Q 035971 85 KPLISEVF-NGINATIVACGAKGSGKTRVIQGSYEEPGLAALAVDEILSI--SEKMGKSITISFYEIFQDH-VYDLLDPK 160 (614)
Q Consensus 85 ~plV~~vl-~G~N~tI~aYGqTGSGKTyTm~G~~~~~GLipral~~LF~~--~~~~~~sV~vS~~EIYnE~-V~DLL~~~ 160 (614)
+..++-++ .+.|+.|+..|.. .++-|---++..|... +-.+.|.+.+-|+.+.++. ..|||.+.
T Consensus 116 q~y~DmcL~~~~NfslIsis~~------------~w~~Lr~~lL~fi~~k~~~Y~~~y~i~lQ~V~Lse~~~S~DlL~~~ 183 (333)
T 4etp_B 116 SVYHDMALNQKKNFNLISLSTT------------PHGSLRESLIKFLAEKDTIYQKQYVITLQFVFLSDDEFSQDMLLDY 183 (333)
T ss_dssp HHHHHHHHHTTCCEEEEEEESS------------CCCHHHHHHHHHHHSTTCHHHHHEEEEEEEEECCSSSCCEESSCC-
T ss_pred HHHHHHHHccCCCeeEEEecCC------------CcHHHHHHHHHHHHhcccccccceEEEEEEEEEcCCCchhhhhccc
Confidence 99999999 8999999999865 2333444455554443 1235568899998888775 79999875
Q ss_pred c----ccceEEecCCCceEecCCeEEEcCCHHHHHHHHHHHHhcCcccccccCCCCCCceEEEEEEEeeccCc------c
Q 035971 161 Q----QEVQILENGQGKIQLKGLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVSPVSNF------L 230 (614)
Q Consensus 161 ~----~~l~i~ed~~~~~~v~gLtev~V~S~ee~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~I~v~~~~~~------~ 230 (614)
. ..+.+.-+. ..+ --+-+.+.+.+..+.+.+..+ ..+. .......-.|+.+.+...... .
T Consensus 184 ~~~~~~~I~lkiee-~sI-~ldS~~i~i~~~~~~l~~~~k-------l~~~-~~~~~~GI~IlKfqf~~~~~~~~~n~~~ 253 (333)
T 4etp_B 184 SHNDKDSIKLKFEK-HSI-SLDSKLVIIENGLEDLPLNFS-------ADEH-PNLPHSGMGIIKVQFFPRDSKSDGNNDP 253 (333)
T ss_dssp ---------CEEET-TEE-ECCSCCEEESSGGGGSCTTSS-------CCC---------CEEEEEEEEECC--------C
T ss_pred cccCCCCceEEeec-ceE-eecceEEEeccccccchhhhc-------cccC-CCCCCCCceEEEEEEEecCcccccccCC
Confidence 2 222221111 111 113334555544332211100 0000 000112445666776665431 1
Q ss_pred ccceeEEEeCCCccccccccCccchhhhhHHhhhhHHHHHHHHHHHhcCCCCccCCCChhhhhhhhccCCCceEEEEEEc
Q 035971 231 PTGKMNFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANESHVPYRESKLTRMLQESLGCKSKILMLTCL 310 (614)
Q Consensus 231 ~~skL~fVDLAGsEr~~k~~~~g~~l~E~~~INkSL~aL~~vI~aL~~~~~~vPyRdSkLTrLLqdsLgGnskt~mI~~v 310 (614)
..-..+||.+-+.. .+..|.+++.- + -.-.|+++-+|+-.|. ..+.+++.++
T Consensus 254 ~~~~fYFiEi~~~~--------------------ti~~l~~~i~~---~----~~~~spi~~ilkkLl~-~TKS~flfnl 305 (333)
T 4etp_B 254 VPVDFYFIELNNLK--------------------SIEQFDKSIFK---K----ESAETPIALVLKKLIS-DTKSFFLLNL 305 (333)
T ss_dssp CCEEEEEEEECSHH--------------------HHHHHHSCC-----------CCCCHHHHHHHHHHH-HSBCEEEEEE
T ss_pred cceeEEEEEecChh--------------------HHHHHHhhcCc---c----cccCCCHHHHHHHHHh-hCcceEEEEc
Confidence 23467888876633 12233333221 1 1345677777776554 4677888888
Q ss_pred CcC--chhHHHHHHhH
Q 035971 311 LPR--SVSTTKTQTGS 324 (614)
Q Consensus 311 sP~--Tl~TL~~asr~ 324 (614)
.-. .-.-|....++
T Consensus 306 ~~~~~~~~lL~is~~i 321 (333)
T 4etp_B 306 NDSKNVNKLLTISEEV 321 (333)
T ss_dssp CCSTTHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHH
Confidence 887 33467777777
No 55
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.12 E-value=0.016 Score=53.99 Aligned_cols=50 Identities=16% Similarity=0.210 Sum_probs=35.9
Q ss_pred eeEeeeeecCCCChHHHHhhhhHHHHHHHhcCCceEEEeeccCCCCcceEe
Q 035971 63 CYKLDYCYEQNEGNGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 63 ~F~FD~VF~~~asQ~eVf~~~v~plV~~vl~G~N~tI~aYGqTGSGKTyTm 113 (614)
.++||.....+..|.++++ .+..+++++--.....++-||++|+|||+.+
T Consensus 6 ~~~f~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALL-TIRVFVHNFNPEEGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHH-HHHHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred hCccccccCCCHHHHHHHH-HHHHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence 3567876665566778875 5666666654444556888999999999876
No 56
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=93.07 E-value=0.089 Score=42.97 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=25.4
Q ss_pred HhhhccCCHHhhccCCCCCHHHHHHHHHH
Q 035971 549 LKLLNTGGKEDLKRLKGIGEKRASYILEL 577 (614)
Q Consensus 549 ~~~lN~A~~~~L~~l~gig~~~A~~Ii~~ 577 (614)
+..|-.|+.++|..+||||+++|+.|+++
T Consensus 47 l~~l~~a~~eeL~~i~GIG~~~a~~I~~~ 75 (78)
T 1kft_A 47 LQGLRNASVEEIAKVPGISQGLAEKIFWS 75 (78)
T ss_dssp HHHHHHCCHHHHTTSSSTTSHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHCCCCCHHHHHHHHHH
Confidence 44466789999999999999999999876
No 57
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=92.84 E-value=0.093 Score=58.88 Aligned_cols=47 Identities=23% Similarity=0.435 Sum_probs=40.2
Q ss_pred cCCHHhhccCCCCCHHHHHHHHHHHHhCCCCCCCHHhhhh----------cCCCHHHHHHHHH
Q 035971 554 TGGKEDLKRLKGIGEKRASYILELREESPEPFKNLDDLKD----------IGLSAKQIKGMMK 606 (614)
Q Consensus 554 ~A~~~~L~~l~gig~~~A~~Ii~~R~~~gg~f~~~~dL~~----------~gl~~~~~~~~~~ 606 (614)
.+...+|++|+|||+++|.+|++. | |++++||.+ .|++.|+.++++.
T Consensus 93 ~~~~~~L~~v~GVGpk~A~~i~~~-----G-~~s~edL~~a~~~~~L~~~~GiG~Ktaq~I~~ 149 (578)
T 2w9m_A 93 PPGLLDLLGVRGLGPKKIRSLWLA-----G-IDSLERLREAAESGELAGLKGFGAKSAATILE 149 (578)
T ss_dssp CHHHHHHTTSTTCCHHHHHHHHHT-----T-CCSHHHHHHHHHHTTTTTSTTCCHHHHHHHHH
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHc-----C-CCCHHHHHHHHhhCccccCCCCCHHHHHHHHH
Confidence 556778999999999999999962 6 999999987 3899999999854
No 58
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=92.82 E-value=0.1 Score=62.09 Aligned_cols=46 Identities=26% Similarity=0.399 Sum_probs=41.8
Q ss_pred hccCCCCCHHHHHHHHHHHHhCCCCCCCHHhhhh-cCCCHHHHHHHHHH
Q 035971 560 LKRLKGIGEKRASYILELREESPEPFKNLDDLKD-IGLSAKQIKGMMKK 607 (614)
Q Consensus 560 L~~l~gig~~~A~~Ii~~R~~~gg~f~~~~dL~~-~gl~~~~~~~~~~~ 607 (614)
|..|+|+|+..|++||+.|+. |||+|++||.+ .+++.+.++.|.+.
T Consensus 969 L~aIkGlG~~~a~~Iv~aR~~--gpF~s~~Df~~R~~v~k~~lE~Li~a 1015 (1041)
T 3f2b_A 969 FNAIPGLGTNVAQAIVRAREE--GEFLSKEDLQQRGKLSKTLLEYLESR 1015 (1041)
T ss_dssp GGGSTTCCHHHHHHHHHHHHT--SCCCSHHHHHHHHTCCHHHHHHHHHT
T ss_pred hHhhCCCCHHHHHHHHHHHhC--CCCCCHHHHHHHHCcCHHHHHHHHHC
Confidence 668999999999999999983 68999999999 99999999998764
No 59
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=92.45 E-value=0.077 Score=44.45 Aligned_cols=40 Identities=25% Similarity=0.433 Sum_probs=32.4
Q ss_pred hhhccCCHHhhccCCCCCHHHHHHHHHHHHhCCCCCCCHHhhh
Q 035971 550 KLLNTGGKEDLKRLKGIGEKRASYILELREESPEPFKNLDDLK 592 (614)
Q Consensus 550 ~~lN~A~~~~L~~l~gig~~~A~~Ii~~R~~~gg~f~~~~dL~ 592 (614)
..|-.|+.++|..+||||+++|+.|+++-+. ||....++.
T Consensus 43 ~~l~~a~~~eL~~i~GIG~~~a~~I~~~l~~---~~~~~~~~~ 82 (89)
T 1z00_A 43 EQLIAASREDLALCPGLGPQKARRLFDVLHE---PFLKVPGGL 82 (89)
T ss_dssp HHHHHCCHHHHHTSTTCCHHHHHHHHHHHHS---CSSSCSSSS
T ss_pred HHHHhCCHHHHHhCCCCCHHHHHHHHHHHHH---HhccchhHh
Confidence 3455789999999999999999999999864 587655543
No 60
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=92.40 E-value=0.066 Score=44.92 Aligned_cols=27 Identities=19% Similarity=0.364 Sum_probs=24.2
Q ss_pred hhccCCHHhhccCCCCCHHHHHHHHHH
Q 035971 551 LLNTGGKEDLKRLKGIGEKRASYILEL 577 (614)
Q Consensus 551 ~lN~A~~~~L~~l~gig~~~A~~Ii~~ 577 (614)
..|.+....|..|||||++.+++++++
T Consensus 11 ~~N~~~~s~L~~IpGIG~kr~~~LL~~ 37 (84)
T 1z00_B 11 KYNPGPQDFLLKMPGVNAKNCRSLMHH 37 (84)
T ss_dssp TSCHHHHHHHHTCSSCCHHHHHHHHHH
T ss_pred cccccHHHHHHhCCCCCHHHHHHHHHH
Confidence 468889999999999999999999963
No 61
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=92.33 E-value=0.071 Score=51.99 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=18.8
Q ss_pred hhccCCHHhhccCCCCCHHHHHHHH-HHHHhC
Q 035971 551 LLNTGGKEDLKRLKGIGEKRASYIL-ELREES 581 (614)
Q Consensus 551 ~lN~A~~~~L~~l~gig~~~A~~Ii-~~R~~~ 581 (614)
.|-.++.++|.++||||+++|++|+ +++.+.
T Consensus 101 aI~~~d~~~L~~vpGIG~K~A~rI~~elk~kl 132 (203)
T 1cuk_A 101 AVEREEVGALVKLPGIGKKTAERLIVEMKDRF 132 (203)
T ss_dssp HHHTTCHHHHHTSTTCCHHHHHHHHHHHHHHG
T ss_pred HHHhCCHHHHhhCCCCCHHHHHHHHHHHHHhh
Confidence 3556666666666666666666665 334443
No 62
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=92.02 E-value=0.18 Score=40.26 Aligned_cols=50 Identities=14% Similarity=0.096 Sum_probs=36.8
Q ss_pred HhhccCCCCCHHHHHHHHHHHHhCCC-CCCCHHhhhh-cCCCHHHHHHHHHH
Q 035971 558 EDLKRLKGIGEKRASYILELREESPE-PFKNLDDLKD-IGLSAKQIKGMMKK 607 (614)
Q Consensus 558 ~~L~~l~gig~~~A~~Ii~~R~~~gg-~f~~~~dL~~-~gl~~~~~~~~~~~ 607 (614)
..|..|||||++.|++|+++-..... --.+.++|.. .|++++.+..+...
T Consensus 14 ~~L~~i~giG~~~a~~Ll~~fgs~~~l~~a~~~~L~~i~Gig~~~a~~i~~~ 65 (75)
T 1x2i_A 14 LIVEGLPHVSATLARRLLKHFGSVERVFTASVAELMKVEGIGEKIAKEIRRV 65 (75)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHCSHHHHHHCCHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHcCCCCCCHHHHHHHHHHcCCHHHHHhCCHHHHhcCCCCCHHHHHHHHHH
Confidence 46889999999999999986410000 0136788888 69999999888654
No 63
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=91.45 E-value=0.16 Score=42.73 Aligned_cols=36 Identities=31% Similarity=0.566 Sum_probs=29.8
Q ss_pred HhhhccCCHHhhccCCCCCHHHHHHHHHHHHhCCCCCCC
Q 035971 549 LKLLNTGGKEDLKRLKGIGEKRASYILELREESPEPFKN 587 (614)
Q Consensus 549 ~~~lN~A~~~~L~~l~gig~~~A~~Ii~~R~~~gg~f~~ 587 (614)
+..|-.|+.++|..++|||+++|+.|+++-.. ||..
T Consensus 55 ~~~l~~as~~eL~~i~GIG~~~a~~I~~~l~~---~~~~ 90 (91)
T 2a1j_B 55 LEQLIAASREDLALCPGLGPQKARRLFDVLHE---PFLK 90 (91)
T ss_dssp HHHHHSCCHHHHHTSSSCCSHHHHHHHHHHHS---CSCC
T ss_pred HHHHHhCCHHHHHhCCCCCHHHHHHHHHHHhh---hhcC
Confidence 44566899999999999999999999998742 4653
No 64
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=91.44 E-value=0.34 Score=47.46 Aligned_cols=57 Identities=28% Similarity=0.418 Sum_probs=43.0
Q ss_pred hhccCCHHhhccCCCCCHHHHHHHH-HHHHhCCCCC----------C-CHHh----hhhcCCCHHHHHHHHHHH
Q 035971 551 LLNTGGKEDLKRLKGIGEKRASYIL-ELREESPEPF----------K-NLDD----LKDIGLSAKQIKGMMKKE 608 (614)
Q Consensus 551 ~lN~A~~~~L~~l~gig~~~A~~Ii-~~R~~~gg~f----------~-~~~d----L~~~gl~~~~~~~~~~~~ 608 (614)
.|-..+.+.|.++||||+++|++|+ +++.+.+. + . ..+| |..+|.+.+.+++.+.+.
T Consensus 116 aI~~~d~~~L~~vpGIG~KtA~rIi~elk~kl~~-~~~~~~~~~~~~~~~~ea~~AL~~LGy~~~ea~~av~~~ 188 (212)
T 2ztd_A 116 VLADGNVAALTRVPGIGKRGAERMVLELRDKVGV-AATGGALSTNGHAVRSPVVEALVGLGFAAKQAEEATDTV 188 (212)
T ss_dssp HHHTTCHHHHHTSTTCCHHHHHHHHHHHTTTCC--------------CCHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHhCCHHHHhhCCCCCHHHHHHHHHHHHHhhcc-ccccccccccCcccHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4667899999999999999999998 77777631 1 1 1233 455899999998888775
No 65
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=91.11 E-value=0.15 Score=40.21 Aligned_cols=20 Identities=15% Similarity=0.409 Sum_probs=18.1
Q ss_pred HHhhccCCCCCHHHHHHHHH
Q 035971 557 KEDLKRLKGIGEKRASYILE 576 (614)
Q Consensus 557 ~~~L~~l~gig~~~A~~Ii~ 576 (614)
...|..|||||++.++++++
T Consensus 3 ~s~L~~IpGIG~kr~~~LL~ 22 (63)
T 2a1j_A 3 QDFLLKMPGVNAKNCRSLMH 22 (63)
T ss_dssp CHHHHTSTTCCHHHHHHHHH
T ss_pred HhHHHcCCCCCHHHHHHHHH
Confidence 46789999999999999996
No 66
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=90.82 E-value=0.053 Score=51.25 Aligned_cols=50 Identities=18% Similarity=0.174 Sum_probs=32.8
Q ss_pred eeEeeeeecCCCChHHHHhhhhHHHHHHHhcCCc-eEEEeeccCCCCcceEe
Q 035971 63 CYKLDYCYEQNEGNGIIFAREVKPLISEVFNGIN-ATIVACGAKGSGKTRVI 113 (614)
Q Consensus 63 ~F~FD~VF~~~asQ~eVf~~~v~plV~~vl~G~N-~tI~aYGqTGSGKTyTm 113 (614)
.+.||.+...+..+.++++ .+..++...-.+.. ..++-||++|+|||+.+
T Consensus 21 ~~~f~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIR-FAERFVAEYEPGKKMKGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHH-HHHHHHHHCCSSCCCCEEEEECSTTSSHHHHH
T ss_pred cCCHhhccCCChhHHHHHH-HHHHHHHHhhhccCCCeEEEECCCCCCHHHHH
Confidence 4567776655545666766 44455554333322 67899999999999875
No 67
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=90.37 E-value=0.19 Score=48.48 Aligned_cols=47 Identities=17% Similarity=0.144 Sum_probs=38.8
Q ss_pred hhccCCCCCHHHHHHHHHH------HHhCCCCCCCHHhhhh-cCCCHHHHHHHHHH
Q 035971 559 DLKRLKGIGEKRASYILEL------REESPEPFKNLDDLKD-IGLSAKQIKGMMKK 607 (614)
Q Consensus 559 ~L~~l~gig~~~A~~Ii~~------R~~~gg~f~~~~dL~~-~gl~~~~~~~~~~~ 607 (614)
.|.++|||||++|.+|+++ .+.. --.++++|.+ .|++.|.+++++..
T Consensus 73 ~L~~v~GIGpk~A~~iL~~f~~~~l~~aI--~~~d~~~L~~vpGIG~K~A~rI~~~ 126 (191)
T 1ixr_A 73 LLLSVSGVGPKVALALLSALPPRLLARAL--LEGDARLLTSASGVGRRLAERIALE 126 (191)
T ss_dssp HHHSSSCCCHHHHHHHHHHSCHHHHHHHH--HTTCHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHhcCCCcCHHHHHHHHHhCChHHHHHHH--HhCCHHHHHhCCCCCHHHHHHHHHH
Confidence 5667999999999999986 5433 2459999999 79999999999754
No 68
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=89.96 E-value=0.2 Score=48.78 Aligned_cols=47 Identities=21% Similarity=0.288 Sum_probs=36.9
Q ss_pred hhccCCCCCHHHHHHHHHH------HHhCCCCCCCHHhhhh-cCCCHHHHHHHHHH
Q 035971 559 DLKRLKGIGEKRASYILEL------REESPEPFKNLDDLKD-IGLSAKQIKGMMKK 607 (614)
Q Consensus 559 ~L~~l~gig~~~A~~Ii~~------R~~~gg~f~~~~dL~~-~gl~~~~~~~~~~~ 607 (614)
.|.+++||||++|.+|+.+ .+.. --.++++|.+ .|++.|.+++++..
T Consensus 74 ~L~~V~GIGpk~A~~iL~~f~~~~l~~aI--~~~d~~~L~~vpGIG~K~A~rI~~e 127 (203)
T 1cuk_A 74 ELIKTNGVGPKLALAILSGMSAQQFVNAV--EREEVGALVKLPGIGKKTAERLIVE 127 (203)
T ss_dssp HHHHSSSCCHHHHHHHHHHSCHHHHHHHH--HTTCHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHhcCCCcCHHHHHHHHhhCChHHHHHHH--HhCCHHHHhhCCCCCHHHHHHHHHH
Confidence 4556999999999999982 3222 1349999999 79999999998753
No 69
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=89.46 E-value=0.067 Score=52.96 Aligned_cols=50 Identities=18% Similarity=0.326 Sum_probs=0.0
Q ss_pred CHHhhccCCCCCHHHHHHHHHHHHhCCCCCC--CHHhhhhcCCCHHHHHHHHH
Q 035971 556 GKEDLKRLKGIGEKRASYILELREESPEPFK--NLDDLKDIGLSAKQIKGMMK 606 (614)
Q Consensus 556 ~~~~L~~l~gig~~~A~~Ii~~R~~~gg~f~--~~~dL~~~gl~~~~~~~~~~ 606 (614)
....|..|||||++.|++++++-..... +. +++||.++|++.+.++.+..
T Consensus 171 ~~s~L~~IpGIG~k~ak~Ll~~FGSl~~-i~~As~eeL~~VGIG~~~A~~I~~ 222 (226)
T 3c65_A 171 FHSVLDDIPGVGEKRKKALLNYFGSVKK-MKEATVEELQRANIPRAVAEKIYE 222 (226)
T ss_dssp -----------------------------------------------------
T ss_pred ccccccccCCCCHHHHHHHHHHhCCHHH-HHhCCHHHHHHcCCCHHHHHHHHH
Confidence 4567899999999999999998532211 22 67888888999888777653
No 70
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=88.84 E-value=0.1 Score=53.67 Aligned_cols=50 Identities=14% Similarity=0.175 Sum_probs=32.2
Q ss_pred eEeeeeecCCCChHHHHhhhhHHHHHHHhcCCceEEEeeccCCCCcceEee
Q 035971 64 YKLDYCYEQNEGNGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQ 114 (614)
Q Consensus 64 F~FD~VF~~~asQ~eVf~~~v~plV~~vl~G~N~tI~aYGqTGSGKTyTm~ 114 (614)
++||.+...+..+..+++ .+..+++..-.+....|+-||++|+||||.+.
T Consensus 121 ~tfd~f~~~~~~~~~~~~-~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 121 IHLSDIDVNNASRMEAFS-AILDFVEQYPSAEQKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCGGGSCCCSHHHHHHHH-HHHHHHHHCSCSSCCEEEEECSTTSSHHHHHH
T ss_pred CCHhhCcCCChHHHHHHH-HHHHHHHhccccCCceEEEECCCCCCHHHHHH
Confidence 566665443334455665 45555555433445678899999999998863
No 71
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=86.82 E-value=0.35 Score=50.57 Aligned_cols=35 Identities=31% Similarity=0.503 Sum_probs=29.6
Q ss_pred ccCCHHhhccCCCCCHHHHHHHHHHHHhCCCCCCCHHhhhh
Q 035971 553 NTGGKEDLKRLKGIGEKRASYILELREESPEPFKNLDDLKD 593 (614)
Q Consensus 553 N~A~~~~L~~l~gig~~~A~~Ii~~R~~~gg~f~~~~dL~~ 593 (614)
.-.+..+|+.|||||+++|+++ |.+ | +++++||.+
T Consensus 93 ~~~~l~~l~~V~GiGpk~a~~l--~~~---G-i~tledL~~ 127 (335)
T 2fmp_A 93 TSSSINFLTRVSGIGPSAARKF--VDE---G-IKTLEDLRK 127 (335)
T ss_dssp HHHHHHHHTTSTTCCHHHHHHH--HHT---T-CCSHHHHHT
T ss_pred chhHHHHHhCCCCCCHHHHHHH--HHc---C-CCCHHHHHH
Confidence 3456788999999999999999 543 5 999999997
No 72
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=85.82 E-value=0.43 Score=46.48 Aligned_cols=49 Identities=22% Similarity=0.267 Sum_probs=34.6
Q ss_pred hhccCCCCCHHHHHHHHHHHHhCCC-CCCCHHhhhh-cCCCHHHHHHHHHH
Q 035971 559 DLKRLKGIGEKRASYILELREESPE-PFKNLDDLKD-IGLSAKQIKGMMKK 607 (614)
Q Consensus 559 ~L~~l~gig~~~A~~Ii~~R~~~gg-~f~~~~dL~~-~gl~~~~~~~~~~~ 607 (614)
.|..|||||++.|++|+++-..... --.+.++|.+ .|++.+.++++...
T Consensus 163 ~L~~i~gVg~~~a~~Ll~~fgs~~~l~~a~~e~L~~v~GiG~~~a~~i~~~ 213 (219)
T 2bgw_A 163 ILQSFPGIGRRTAERILERFGSLERFFTASKAEISKVEGIGEKRAEEIKKI 213 (219)
T ss_dssp HHHTSTTCCHHHHHHHHHHHSSHHHHTTCCHHHHHHSTTCCHHHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHcCCHHHHHhCCHHHHhhCCCCCHHHHHHHHHH
Confidence 4678999999999999987531101 0146788888 78898888877643
No 73
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=85.05 E-value=0.34 Score=43.94 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=23.0
Q ss_pred hhHHHHHHHhcCCceEEEeeccCCCCcceEe
Q 035971 83 EVKPLISEVFNGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 83 ~v~plV~~vl~G~N~tI~aYGqTGSGKTyTm 113 (614)
.+..+++.+..+....++-||++|+|||+.+
T Consensus 30 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 30 EIRRTIQVLQRRTKNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp HHHHHHHHHTSSSSCEEEEECCTTSCHHHHH
T ss_pred HHHHHHHHHhcCCCCceEEECCCCCCHHHHH
Confidence 3444555555566778899999999999765
No 74
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=84.49 E-value=0.44 Score=42.15 Aligned_cols=43 Identities=23% Similarity=0.347 Sum_probs=29.2
Q ss_pred hhhccCCHHhhccCCCCCHHHHHHHHHHHHhC--CCCCCCHHhhhh
Q 035971 550 KLLNTGGKEDLKRLKGIGEKRASYILELREES--PEPFKNLDDLKD 593 (614)
Q Consensus 550 ~~lN~A~~~~L~~l~gig~~~A~~Ii~~R~~~--gg~f~~~~dL~~ 593 (614)
.-|..|+.++|..++|||+.+|++|++...+. -| |.+-.++.+
T Consensus 50 e~va~a~~~eL~~i~GIse~ka~kIi~aA~kl~~~g-F~ta~e~~~ 94 (114)
T 1b22_A 50 EAVAYAPKKELINIKGISEAKADKILAEAAKLVPMG-FTTATEFHQ 94 (114)
T ss_dssp GGBTSSBHHHHHTTTTCSTTHHHHHHHHHHHHSCCC----------
T ss_pred HHHHhCCHHHHHHccCCCHHHHHHHHHHHHHHcccC-CCcHHHHHH
Confidence 34789999999999999999999999987753 24 888777765
No 75
>4gkp_A Spindle POLE BODY-associated protein VIK1; kinesin motor domain-like fold, microtubule binding protein, KAR3, structural protein; 2.42A {Candida glabrata} PDB: 4gkq_A
Probab=83.48 E-value=40 Score=34.00 Aligned_cols=258 Identities=13% Similarity=0.074 Sum_probs=132.1
Q ss_pred CCCCCCCCCCeEEEEEeCCCCChhhccCCcEEEeCCCCCCCCeEEEEeCCCCCCCceeeEeeeeecCC-CChHHHHhhhh
Q 035971 6 ADTGLNISKKARVIAKIRGFADLEAESANWVCIQKPNGEDSDSVTVSFGEQPSSRKECYKLDYCYEQN-EGNGIIFAREV 84 (614)
Q Consensus 6 ~~~~~~~~~~VrV~vRvRP~~~~e~~~~~~v~v~~~~~~d~~~v~v~~~~~~~~~~~~F~FD~VF~~~-asQ~eVf~~~v 84 (614)
+++..+++|.||.|+=+-.-. .++-..|.-. .+ +|.- .+..+.|.|++|.+.. .+-++++....
T Consensus 5 eNSIdElkG~iRcFAYi~e~~-----l~~~~~IdY~----~~--tI~~----~~~~~~y~F~RiIp~~~~~e~~ll~qE~ 69 (275)
T 4gkp_A 5 LNSITELKGCARLFANIIEDE-----ISEKLIVNYS----DE--SIED----MKNHKTYKFTKLIQNFSHQNKDLFKEDL 69 (275)
T ss_dssp -----------CEEEEEETTT-----SCTTEEEETT----TT--EEEE----TTTTEEEECSEEEEECSSSCCCGGGTHH
T ss_pred cccHHHhcCcEEEEEEEcccc-----CCccEEEecc----cc--eecc----CCCccEEEEEeeeccccCCHHHHHHHHH
Confidence 466778999999999985421 1223455442 11 3321 2345789999999655 45677888899
Q ss_pred HHHHHHHh-cCCceEEEeeccCCCCcceEeecCCCCcchhHHHHHHHHhhccccCceEEEEEEEEecce-eccccCccc-
Q 035971 85 KPLISEVF-NGINATIVACGAKGSGKTRVIQGSYEEPGLAALAVDEILSISEKMGKSITISFYEIFQDH-VYDLLDPKQ- 161 (614)
Q Consensus 85 ~plV~~vl-~G~N~tI~aYGqTGSGKTyTm~G~~~~~GLipral~~LF~~~~~~~~sV~vS~~EIYnE~-V~DLL~~~~- 161 (614)
+...+-++ .+.|+.+|+.++.- .+-+.-..+..+...- ...+.+.+-|+=+..+. --|||....
T Consensus 70 ~~Y~DmCL~k~~NfnlISiS~~~------------~~~lr~~ll~f~~~~y-~~~y~itlQ~V~Ls~~~~S~Dll~~~~~ 136 (275)
T 4gkp_A 70 HVYIDFCLKRRENFNLFSVGSSN------------IPNTFEKLLAFFKNNY-FDKFVITLQYVMLSDNADSQDLLSNNKD 136 (275)
T ss_dssp HHHHHHHHHTTCCEEEEEECCSS------------CCSHHHHHHHHHHHHT-TTTEEEEEEEEEEC----CEETTCC---
T ss_pred HHHHHHHhccCCCceEEEecCCC------------cHHHHHHHHHHHHHhc-cccceEEEEEEEecCCCcccccccCCcc
Confidence 99999888 59999999998643 3445555666666552 34567777777776554 458874332
Q ss_pred ----ccceEEecCCCceEecCCeEEEcCCHHHHHHHHHHHHhcCcccccccCCCCCCceEEEEEEEeeccC-ccccceeE
Q 035971 162 ----QEVQILENGQGKIQLKGLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVSPVSN-FLPTGKMN 236 (614)
Q Consensus 162 ----~~l~i~ed~~~~~~v~gLtev~V~S~ee~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~I~v~~~~~-~~~~skL~ 236 (614)
.++.+.-+.+ .+.+ +-+.+.+.+..+...+. ...-.......-.|+.+.+..... ....-.++
T Consensus 137 ~~~d~eI~Lk~e~~-sI~l-dS~~i~i~~~~~~~~~~----------~~~~~~~~~~Gi~IlKfq~~~~~~~e~~pidfY 204 (275)
T 4gkp_A 137 GGKDVEIKLKIEES-TISL-GSTLITLDEITDKLQIK----------KKYSQLNHQNGIGLSKFQFFCLQDIEPIPIDFY 204 (275)
T ss_dssp -------CEEECSS-CEEE-CSCCEEGGGCCSCC--C----------CSCC-----CCEEEEEEEEEETTCSSCCCEEEE
T ss_pred ccCCcceeEEeecc-eeee-cceEEEeccCccccchh----------hhccCCCCCCCceEEEEEEEeccCCCCCceeEE
Confidence 1233332211 1111 22223333222111110 000011112233466666655433 22223688
Q ss_pred EEeCCCccccccccCccchhhhhHHhhhhHHHHHHHHHHHhcCCCCccCCCChhhhhhhhccCCCceEEEEEEcCcC--c
Q 035971 237 FVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANESHVPYRESKLTRMLQESLGCKSKILMLTCLLPR--S 314 (614)
Q Consensus 237 fVDLAGsEr~~k~~~~g~~l~E~~~INkSL~aL~~vI~aL~~~~~~vPyRdSkLTrLLqdsLgGnskt~mI~~vsP~--T 314 (614)
||.+-+..- ...|.+++. ... +-.|+++-+|+--|. ..+-+++..+.-. .
T Consensus 205 Fiei~~~~t--------------------~~~L~~~~s----~~~---~~~spi~~iLk~LL~-~TKS~flfni~~~~n~ 256 (275)
T 4gkp_A 205 FIEIYQPSI--------------------YPILKRSTG----TES---NLNSPLEIVLKKIFH-DTKSAFVFQIDHSAEV 256 (275)
T ss_dssp EEEECCGGG--------------------HHHHHHC---------------CHHHHHHHHHHH-HSBCCEEEEESSCTTH
T ss_pred EEEecCHHH--------------------HHHHHhccC----CCC---CCCCcHHHHHHHHHh-cCcceEEEEccCcchH
Confidence 888877431 222333221 111 112788888876664 5677888888888 4
Q ss_pred hhHHHHHHhHhhhhhcCC
Q 035971 315 VSTTKTQTGSQMHSSTKK 332 (614)
Q Consensus 315 l~TL~~asr~~r~i~nk~ 332 (614)
-..|.++.++ .++++-+
T Consensus 257 ~~lL~ls~~l-~~~~~~k 273 (275)
T 4gkp_A 257 YDILKLSSHL-SFIRNPK 273 (275)
T ss_dssp HHHHHHHHHH-TTCCCCC
T ss_pred HHHHHHHHHh-ccccCcC
Confidence 4699999999 7777643
No 76
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=83.17 E-value=0.85 Score=36.70 Aligned_cols=39 Identities=23% Similarity=0.293 Sum_probs=28.9
Q ss_pred cchhhhHHHHHhhhccCCHHhhccCCCCCHHHHHHHHHH
Q 035971 539 GMKNSLVQEYLKLLNTGGKEDLKRLKGIGEKRASYILEL 577 (614)
Q Consensus 539 ~~~~~l~~~~~~~lN~A~~~~L~~l~gig~~~A~~Ii~~ 577 (614)
++-....+..+...--++.+||..+||||++++++|..|
T Consensus 34 GIG~~~A~~Il~~r~~~s~~eL~~v~Gig~k~~~~i~~~ 72 (75)
T 2duy_A 34 GIGPVLARRIVEGRPYARVEDLLKVKGIGPATLERLRPY 72 (75)
T ss_dssp TCCHHHHHHHHHTCCCSSGGGGGGSTTCCHHHHHHHGGG
T ss_pred CCCHHHHHHHHHHcccCCHHHHHhCCCCCHHHHHHHHHh
Confidence 343444444454446699999999999999999999654
No 77
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=82.55 E-value=0.39 Score=43.58 Aligned_cols=31 Identities=23% Similarity=0.372 Sum_probs=22.9
Q ss_pred hhHHHHHHHhcCCceEEEeeccCCCCcceEe
Q 035971 83 EVKPLISEVFNGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 83 ~v~plV~~vl~G~N~tI~aYGqTGSGKTyTm 113 (614)
.+..+++.+..+....++-||++|+|||+.+
T Consensus 30 ~~~~l~~~l~~~~~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 30 EIRRAIQILSRRTKNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp HHHHHHHHHTSSSSCEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHHhCCCCCceEEECCCCCCHHHHH
Confidence 3444555555666778899999999999765
No 78
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=81.96 E-value=1.3 Score=46.98 Aligned_cols=33 Identities=21% Similarity=0.322 Sum_probs=27.5
Q ss_pred HHhhccCCCCCHHHHHHHHHHHHhCCCCCCCHHhhhh-cC
Q 035971 557 KEDLKRLKGIGEKRASYILELREESPEPFKNLDDLKD-IG 595 (614)
Q Consensus 557 ~~~L~~l~gig~~~A~~Ii~~R~~~gg~f~~~~dL~~-~g 595 (614)
..+|+.|||||+++|+++ |++ | +++++||.+ .|
T Consensus 120 l~~l~~I~GvGpk~a~~l--y~~---G-i~tledL~~~~g 153 (381)
T 1jms_A 120 FKLFTSVFGVGLKTAEKW--FRM---G-FRTLSKIQSDKS 153 (381)
T ss_dssp HHHHHTSTTCCHHHHHHH--HHT---T-CCSHHHHHHCSS
T ss_pred HHHHHccCCCCHHHHHHH--HHc---C-CCcHHHHHhCcc
Confidence 457889999999999999 553 5 999999995 44
No 79
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=81.59 E-value=1.4 Score=46.34 Aligned_cols=32 Identities=25% Similarity=0.461 Sum_probs=27.2
Q ss_pred CHHhhccCCCCCHHHHHHHHHHHHhCCCCCCCHHhhhh
Q 035971 556 GKEDLKRLKGIGEKRASYILELREESPEPFKNLDDLKD 593 (614)
Q Consensus 556 ~~~~L~~l~gig~~~A~~Ii~~R~~~gg~f~~~~dL~~ 593 (614)
...+|+.|||||+++|+++ |++ | +++++||..
T Consensus 100 ~l~~l~~I~GvG~kta~~l--~~~---G-i~tledL~~ 131 (360)
T 2ihm_A 100 TMKLFTQVFGVGVKTANRW--YQE---G-LRTLDELRE 131 (360)
T ss_dssp HHHHHHTSTTCCHHHHHHH--HHT---T-CCSHHHHHT
T ss_pred HHHHHhCCCCCCHHHHHHH--HHc---C-CCCHHHHHh
Confidence 3457889999999999999 554 5 999999986
No 80
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.34 E-value=5.1 Score=43.23 Aligned_cols=76 Identities=16% Similarity=0.175 Sum_probs=50.5
Q ss_pred eeEeeeeecCCCChHHHHhhhhHHHHH-HHhc--C--CceEEEeeccCCCCcceEe--------------ecC---CCCc
Q 035971 63 CYKLDYCYEQNEGNGIIFAREVKPLIS-EVFN--G--INATIVACGAKGSGKTRVI--------------QGS---YEEP 120 (614)
Q Consensus 63 ~F~FD~VF~~~asQ~eVf~~~v~plV~-~vl~--G--~N~tI~aYGqTGSGKTyTm--------------~G~---~~~~ 120 (614)
.-+||.|-+.+.--+++.+.++.|+.. ..+. | ..-.|+-||+.|+|||.+. -|+ ....
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~v 256 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYI 256 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCS
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhccc
Confidence 456788877776667777766666652 2333 2 2356999999999999653 221 2345
Q ss_pred chhHHHHHHHHhhccccC
Q 035971 121 GLAALAVDEILSISEKMG 138 (614)
Q Consensus 121 GLipral~~LF~~~~~~~ 138 (614)
|--.+.++.+|.......
T Consensus 257 Gese~~ir~lF~~A~~~a 274 (434)
T 4b4t_M 257 GEGAKLVRDAFALAKEKA 274 (434)
T ss_dssp SHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHhcC
Confidence 777788888888766543
No 81
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=81.27 E-value=1.3 Score=49.58 Aligned_cols=45 Identities=22% Similarity=0.372 Sum_probs=35.9
Q ss_pred HHhhccCCCCCHHHHHHHHHHHHhCCCCCCCHHhhhh----------cCCCHHHHHHHHH
Q 035971 557 KEDLKRLKGIGEKRASYILELREESPEPFKNLDDLKD----------IGLSAKQIKGMMK 606 (614)
Q Consensus 557 ~~~L~~l~gig~~~A~~Ii~~R~~~gg~f~~~~dL~~----------~gl~~~~~~~~~~ 606 (614)
..+|.+|+||||++|.+|+... | +.+++||.. .|++.|..++++.
T Consensus 92 ~~~l~~v~GvGpk~A~~~~~~l----g-~~~~~~l~~a~~~~~l~~~~GiG~k~a~~i~~ 146 (575)
T 3b0x_A 92 VLEVMEVPGVGPKTARLLYEGL----G-IDSLEKLKAALDRGDLTRLKGFGPKRAERIRE 146 (575)
T ss_dssp HHHHHTSTTTCHHHHHHHHHTS----C-CCSHHHHHHHHHHTGGGGSTTCCHHHHHHHHH
T ss_pred HHHHhcCCCcCHHHHHHHHHhc----C-CCCHHHHHHHHHcCCcccCCCCCccHHHHHHH
Confidence 4678899999999999998752 4 678877653 5899999998854
No 82
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=81.00 E-value=0.62 Score=47.19 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=24.2
Q ss_pred HHHHhhhhHHHHHHHhc--CC--ceEEEeeccCCCCcceEe
Q 035971 77 GIIFAREVKPLISEVFN--GI--NATIVACGAKGSGKTRVI 113 (614)
Q Consensus 77 ~eVf~~~v~plV~~vl~--G~--N~tI~aYGqTGSGKTyTm 113 (614)
..+.+..+..++...+. |. ...++-||++|+|||+..
T Consensus 13 ~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 13 PAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp HHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 44555566666666553 22 236888999999999643
No 83
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.55 E-value=4 Score=43.98 Aligned_cols=119 Identities=18% Similarity=0.236 Sum_probs=64.7
Q ss_pred eEEEEEeCCCCChhhcc-CCcEEEeCCCCCCCCeEEEEeCCCCCCC--------ceeeEeeeeecCCCChHHHHhhhhHH
Q 035971 16 ARVIAKIRGFADLEAES-ANWVCIQKPNGEDSDSVTVSFGEQPSSR--------KECYKLDYCYEQNEGNGIIFAREVKP 86 (614)
Q Consensus 16 VrV~vRvRP~~~~e~~~-~~~v~v~~~~~~d~~~v~v~~~~~~~~~--------~~~F~FD~VF~~~asQ~eVf~~~v~p 86 (614)
-+.+|++....+.+... +..+.++. ++..+.-.++...... ...-+||-|-+-+.--+++.+.+..|
T Consensus 116 ~~~~v~~~~~~~~~~~~~~~~v~~~~----~~~~~~~~l~~~~d~~v~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~p 191 (428)
T 4b4t_K 116 MSYVVRILSTLDRELLKPSMSVALHR----HSNALVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEIREAVELP 191 (428)
T ss_dssp CEEEECBCSSSCTTTCCTTCEEEECS----SSCCEEEEECSCCCCSSCCCEEESSCSCCGGGSCSCHHHHHHHHHHHHHH
T ss_pred CEEEEeccccccHhhCCCCceeeeec----chhhHHhhcCcccCcchhhccCCCCCCCCHHHhccHHHHHHHHHHHHHHH
Confidence 45667777665544332 43444432 2233333333222111 12345666666555445555544444
Q ss_pred HHH-HHhc--CC--ceEEEeeccCCCCcceEe--------------ecC---CCCcchhHHHHHHHHhhccccC
Q 035971 87 LIS-EVFN--GI--NATIVACGAKGSGKTRVI--------------QGS---YEEPGLAALAVDEILSISEKMG 138 (614)
Q Consensus 87 lV~-~vl~--G~--N~tI~aYGqTGSGKTyTm--------------~G~---~~~~GLipral~~LF~~~~~~~ 138 (614)
+.. ..+. |. .-.|+-||+.|+|||... -|+ ....|--.+.++++|..+....
T Consensus 192 l~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~a 265 (428)
T 4b4t_K 192 LVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENA 265 (428)
T ss_dssp HHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHTC
T ss_pred HhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHHHHcC
Confidence 432 2232 32 345999999999999653 222 2346777888999998876544
No 84
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=79.69 E-value=0.55 Score=46.27 Aligned_cols=45 Identities=13% Similarity=0.223 Sum_probs=21.4
Q ss_pred eeEeeeeecCCCChHHHHhhhhHHHHHHHhcCCceEEEeeccCCCCcceEe
Q 035971 63 CYKLDYCYEQNEGNGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 63 ~F~FD~VF~~~asQ~eVf~~~v~plV~~vl~G~N~tI~aYGqTGSGKTyTm 113 (614)
.|+||.+.+.+..-..+.+ .+..+.. .+..|+-||++|+|||+..
T Consensus 2 ~~~f~~~ig~~~~~~~~~~-----~~~~~~~-~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 2 AEYKDNLLGEANSFLEVLE-----QVSHLAP-LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp --------CCCHHHHHHHH-----HHHHHTT-SCSCEEEECCTTSCHHHHH
T ss_pred CcccccceeCCHHHHHHHH-----HHHHHhC-CCCCEEEECCCCCcHHHHH
Confidence 3778888775433333332 2223222 3456888999999999653
No 85
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=79.13 E-value=2 Score=44.80 Aligned_cols=32 Identities=25% Similarity=0.497 Sum_probs=25.8
Q ss_pred hhccCCCCCHHHHHHHHHHHHhCCCCCCCHHhhhh-cCC
Q 035971 559 DLKRLKGIGEKRASYILELREESPEPFKNLDDLKD-IGL 596 (614)
Q Consensus 559 ~L~~l~gig~~~A~~Ii~~R~~~gg~f~~~~dL~~-~gl 596 (614)
.|+.|||||+++|+++ |.+ | +++++||.+ ..+
T Consensus 97 ll~~v~GiG~k~a~~l--~~~---G-i~tledL~~a~~~ 129 (335)
T 2bcq_A 97 LFSNIWGAGTKTAQMW--YQQ---G-FRSLEDIRSQASL 129 (335)
T ss_dssp HHHTSTTCCHHHHHHH--HHT---T-CCSHHHHHHHCCC
T ss_pred HHhcCCCcCHHHHHHH--HHc---C-CCCHHHHHHHhcc
Confidence 3469999999999999 443 5 999999988 444
No 86
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=78.22 E-value=0.71 Score=45.37 Aligned_cols=50 Identities=18% Similarity=0.196 Sum_probs=31.3
Q ss_pred eeEeeeeecCCCChHHHHhhhhHHHH-----HHHhcCCceEEEeeccCCCCcceEe
Q 035971 63 CYKLDYCYEQNEGNGIIFAREVKPLI-----SEVFNGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 63 ~F~FD~VF~~~asQ~eVf~~~v~plV-----~~vl~G~N~tI~aYGqTGSGKTyTm 113 (614)
.+.||.+.+.+...+.+.+ .+..+- ..+-......++-||++|+|||+..
T Consensus 7 ~~~~~~i~G~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVE-IVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHH-HHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHH-HHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHH
Confidence 4678999988877666654 332211 1111122345899999999999764
No 87
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=77.87 E-value=2.7 Score=33.74 Aligned_cols=51 Identities=25% Similarity=0.455 Sum_probs=36.9
Q ss_pred HHhhccCCCCCHHHHHHHHHHHHhCCCCCCCHHhh--------hh-cCCCHHHHHHHHHHHhh-hhc
Q 035971 557 KEDLKRLKGIGEKRASYILELREESPEPFKNLDDL--------KD-IGLSAKQIKGMMKKEME-CLF 613 (614)
Q Consensus 557 ~~~L~~l~gig~~~A~~Ii~~R~~~gg~f~~~~dL--------~~-~gl~~~~~~~~~~~~~~-~~~ 613 (614)
.++|..|+|||+..|.+.- + . | |++++|| .. .||+...+.+|+...-. |-|
T Consensus 6 ~~~l~~L~Gi~~~~~~kL~---e-~-G-i~TvedlA~~~~~eL~~i~gise~kA~~ii~aAr~~~w~ 66 (70)
T 1wcn_A 6 ADDLLNLEGVDRDLAFKLA---A-R-G-VCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARNICWF 66 (70)
T ss_dssp CHHHHSSTTCCHHHHHHHH---T-T-T-CCSHHHHHTSCHHHHHTSSSCCHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHcCCCCHHHHHHHH---H-c-C-CCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHHHccCc
Confidence 3578899999998886653 2 2 4 7776654 45 68999999999877654 444
No 88
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=77.68 E-value=0.72 Score=45.70 Aligned_cols=51 Identities=20% Similarity=0.070 Sum_probs=31.2
Q ss_pred eeEeeeeecCCCChHHHHhhhhHHHH-----HHHhcCCceEEEeeccCCCCcceEe
Q 035971 63 CYKLDYCYEQNEGNGIIFAREVKPLI-----SEVFNGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 63 ~F~FD~VF~~~asQ~eVf~~~v~plV-----~~vl~G~N~tI~aYGqTGSGKTyTm 113 (614)
.+.||.+.+.+..-+.+.+....++. ...--.....++-||++|+|||+..
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 57788888766555555543333221 1111134456899999999999654
No 89
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=77.43 E-value=0.69 Score=47.97 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=19.2
Q ss_pred HhcCCceEEEeeccCCCCcceEe
Q 035971 91 VFNGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 91 vl~G~N~tI~aYGqTGSGKTyTm 113 (614)
+-.|...+++-||++|+|||.++
T Consensus 40 i~~~~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 40 LMSSQNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp HHTTCCCEEEEECCCSHHHHHHH
T ss_pred hcCCCCCeEEEECCCCCCHHHHH
Confidence 34678889999999999999664
No 90
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=76.71 E-value=0.51 Score=53.17 Aligned_cols=50 Identities=16% Similarity=0.238 Sum_probs=0.0
Q ss_pred HhhhccCCHHhhccCCCCCHHHHHHHHHHHHhCCCCCCCHHhhhhcCCCHH
Q 035971 549 LKLLNTGGKEDLKRLKGIGEKRASYILELREESPEPFKNLDDLKDIGLSAK 599 (614)
Q Consensus 549 ~~~lN~A~~~~L~~l~gig~~~A~~Ii~~R~~~gg~f~~~~dL~~~gl~~~ 599 (614)
+..|-.|+.++|.+|+|||+++|+.|++|-..- ..-.-++.|.+.|+...
T Consensus 552 le~L~~As~eeL~~I~GIG~~~A~sI~~ff~~~-~n~~~i~~L~~~Gv~~~ 601 (615)
T 3sgi_A 552 LDAIAAASTDQLAAVEGVGPTIAAAVTEWFAVD-WHREIVDKWRAAGVRMV 601 (615)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHhCCHHHHhhCCCCCHHHHHHHHHHHcCH-HHHHHHHHHHHcCCCcc
Confidence 345778899999999999999999999987543 22456888888887643
No 91
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=76.63 E-value=0.66 Score=47.24 Aligned_cols=44 Identities=14% Similarity=0.241 Sum_probs=28.1
Q ss_pred eeeEeeeeecCCCChHHHHhhhhHHHHHHHhcCCceEEEeeccCCCCcceEe
Q 035971 62 ECYKLDYCYEQNEGNGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 62 ~~F~FD~VF~~~asQ~eVf~~~v~plV~~vl~G~N~tI~aYGqTGSGKTyTm 113 (614)
..|.||.+++.+ .+... +...++.+....|+-||++|+|||+..
T Consensus 19 ~~~~f~~i~G~~----~~~~~----l~~~~~~~~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 19 PVFPFSAIVGQE----DMKLA----LLLTAVDPGIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CCCCGGGSCSCH----HHHHH----HHHHHHCGGGCCEEEECCGGGCTTHHH
T ss_pred CCCCchhccChH----HHHHH----HHHHhhCCCCceEEEECCCCccHHHHH
Confidence 457888887753 23321 233334444445999999999999654
No 92
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=76.57 E-value=0.72 Score=46.88 Aligned_cols=48 Identities=27% Similarity=0.457 Sum_probs=28.8
Q ss_pred eeEeeeeecCCCChHHHHhhhhHHHHHHHhcCCceEEEeeccCCCCcceEe
Q 035971 63 CYKLDYCYEQNEGNGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 63 ~F~FD~VF~~~asQ~eVf~~~v~plV~~vl~G~N~tI~aYGqTGSGKTyTm 113 (614)
.|+||.++.. ..+...+. .+..++..-- +....++-||++|+|||+.+
T Consensus 7 ~~~f~~fv~g-~~~~~a~~-~~~~~~~~~~-~~~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 7 KYTLENFIVG-EGNRLAYE-VVKEALENLG-SLYNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp TCCSSSCCCC-TTTHHHHH-HHHHHHHTTT-TSCSSEEEECSSSSSHHHHH
T ss_pred CCCcccCCCC-CcHHHHHH-HHHHHHhCcC-CCCCeEEEECCCCCcHHHHH
Confidence 5788876532 23444444 2444443321 12346889999999999876
No 93
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=76.17 E-value=1.4 Score=43.06 Aligned_cols=51 Identities=25% Similarity=0.344 Sum_probs=36.0
Q ss_pred CCHHhhccCCCCCHHHHHHHHHHHHhCCCCCCCHHhh-----hhcCC---CHHHHHHHHHH
Q 035971 555 GGKEDLKRLKGIGEKRASYILELREESPEPFKNLDDL-----KDIGL---SAKQIKGMMKK 607 (614)
Q Consensus 555 A~~~~L~~l~gig~~~A~~Ii~~R~~~gg~f~~~~dL-----~~~gl---~~~~~~~~~~~ 607 (614)
.+.++|++|||||++.|+.|+-+=-.... | -+|+- ...|+ +.+.+++++..
T Consensus 118 ~~~~~L~~lpGIG~kTA~~il~~a~~~~~-~-~vD~~v~Ri~~rlg~~~~~~~~~~~~l~~ 176 (218)
T 1pu6_A 118 VTREWLLDQKGIGKESADAILCYACAKEV-M-VVDKYSYLFLKKLGIEIEDYDELQHFFEK 176 (218)
T ss_dssp CCHHHHHTSTTCCHHHHHHHHHHTTCCSC-C-CCCHHHHHHHHHTTCCCCSHHHHHHHHHH
T ss_pred HHHHHHHcCCCcCHHHHHHHHHHHCCCCc-c-ccCHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 56889999999999999999987533322 4 23332 22554 67788887776
No 94
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=76.05 E-value=0.67 Score=45.30 Aligned_cols=50 Identities=18% Similarity=0.203 Sum_probs=27.7
Q ss_pred eeEeeeeecCCCChHHHHhhhhHHHH-HHHhcCC----ceEEEeeccCCCCcceEe
Q 035971 63 CYKLDYCYEQNEGNGIIFAREVKPLI-SEVFNGI----NATIVACGAKGSGKTRVI 113 (614)
Q Consensus 63 ~F~FD~VF~~~asQ~eVf~~~v~plV-~~vl~G~----N~tI~aYGqTGSGKTyTm 113 (614)
.++||.+.+.+....++-+ .+..+- ..++.+. ...++-||++|+|||+.+
T Consensus 12 ~~~~~~i~g~~~~~~~l~~-l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 12 KVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp SCCGGGCCSCHHHHHHHHH-HHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 5778888876543333322 111110 0122221 223899999999999765
No 95
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=75.78 E-value=1.5 Score=41.59 Aligned_cols=20 Identities=30% Similarity=0.318 Sum_probs=16.7
Q ss_pred CCceEEEeeccCCCCcceEe
Q 035971 94 GINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 94 G~N~tI~aYGqTGSGKTyTm 113 (614)
+....++-||++|+|||+.+
T Consensus 50 ~~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 50 DGVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp CSCSEEEEECSTTSSHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 35678999999999999765
No 96
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=75.13 E-value=1.7 Score=42.20 Aligned_cols=28 Identities=36% Similarity=0.561 Sum_probs=24.9
Q ss_pred hccCCHHhhccCCCCCHHHHHHHHHHHH
Q 035971 552 LNTGGKEDLKRLKGIGEKRASYILELRE 579 (614)
Q Consensus 552 lN~A~~~~L~~l~gig~~~A~~Ii~~R~ 579 (614)
|-.|+.++|..+||||+++|++|.++-.
T Consensus 188 l~~a~~e~L~~v~GiG~~~a~~i~~~~~ 215 (219)
T 2bgw_A 188 FFTASKAEISKVEGIGEKRAEEIKKILM 215 (219)
T ss_dssp HTTCCHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred HHhCCHHHHhhCCCCCHHHHHHHHHHHh
Confidence 4468999999999999999999998864
No 97
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=74.58 E-value=0.91 Score=45.96 Aligned_cols=51 Identities=14% Similarity=0.083 Sum_probs=30.6
Q ss_pred eeEeeeeecCCCChHHHHhhhhHHHHH-HHh----cCCceEEEeeccCCCCcceEe
Q 035971 63 CYKLDYCYEQNEGNGIIFAREVKPLIS-EVF----NGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 63 ~F~FD~VF~~~asQ~eVf~~~v~plV~-~vl----~G~N~tI~aYGqTGSGKTyTm 113 (614)
.+.||.|.+.+..-+.+.+.+..|+.. ..+ -.....|+-||++|+|||+.+
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 356788877665555555543333211 111 123457899999999999654
No 98
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=74.40 E-value=1.6 Score=42.77 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=22.8
Q ss_pred CCHHhhccCCCCCHHHHHHHHHHHHhC
Q 035971 555 GGKEDLKRLKGIGEKRASYILELREES 581 (614)
Q Consensus 555 A~~~~L~~l~gig~~~A~~Ii~~R~~~ 581 (614)
.+.++|++|||||++.|+.|+-+=-..
T Consensus 106 ~~~~~L~~lpGIG~~TA~~il~~a~~~ 132 (225)
T 1kg2_A 106 ETFEEVAALPGVGRSTAGAILSLSLGK 132 (225)
T ss_dssp CSHHHHHTSTTCCHHHHHHHHHHHHCC
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHhCCC
Confidence 368999999999999999999875433
No 99
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=74.28 E-value=1.2 Score=43.91 Aligned_cols=21 Identities=24% Similarity=0.251 Sum_probs=17.7
Q ss_pred cCCceEEEeeccCCCCcceEe
Q 035971 93 NGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 93 ~G~N~tI~aYGqTGSGKTyTm 113 (614)
......++-||++|+|||+..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHH
Confidence 566778999999999999754
No 100
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=74.00 E-value=1.3 Score=41.43 Aligned_cols=23 Identities=17% Similarity=0.052 Sum_probs=20.4
Q ss_pred CCHHhhccCCCCCHHHHHHHHHH
Q 035971 555 GGKEDLKRLKGIGEKRASYILEL 577 (614)
Q Consensus 555 A~~~~L~~l~gig~~~A~~Ii~~ 577 (614)
-+.++|.+|||||++.|++|.-+
T Consensus 101 ~~~~~L~~LpGVG~yTAdav~~F 123 (161)
T 4e9f_A 101 KQWKYPIELHGIGKYGNDSYRIF 123 (161)
T ss_dssp SCCSSGGGSTTCCHHHHHHHHHH
T ss_pred CChhhhhcCCCchHHHHHHHHHH
Confidence 47799999999999999998665
No 101
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=73.95 E-value=1.7 Score=42.05 Aligned_cols=23 Identities=39% Similarity=0.468 Sum_probs=21.0
Q ss_pred CCHHhhccCCCCCHHHHHHHHHH
Q 035971 555 GGKEDLKRLKGIGEKRASYILEL 577 (614)
Q Consensus 555 A~~~~L~~l~gig~~~A~~Ii~~ 577 (614)
...++|.+|||||++.|+.|+-+
T Consensus 114 ~~~~~L~~lpGIG~kTA~~il~~ 136 (207)
T 3fhg_A 114 LARERLLNIKGIGMQEASHFLRN 136 (207)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCcCHHHHHHHHHH
Confidence 56789999999999999999976
No 102
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=73.91 E-value=1.7 Score=42.41 Aligned_cols=24 Identities=17% Similarity=0.386 Sum_probs=21.5
Q ss_pred CCHHhhccCCCCCHHHHHHHHHHH
Q 035971 555 GGKEDLKRLKGIGEKRASYILELR 578 (614)
Q Consensus 555 A~~~~L~~l~gig~~~A~~Ii~~R 578 (614)
.+.++|++|||||++.|+.|+-+=
T Consensus 112 ~~~~~L~~lpGIG~~TA~~il~~~ 135 (221)
T 1kea_A 112 RNRKAILDLPGVGKYTCAAVMCLA 135 (221)
T ss_dssp SCHHHHHTSTTCCHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHh
Confidence 467999999999999999999874
No 103
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.40 E-value=16 Score=39.44 Aligned_cols=75 Identities=20% Similarity=0.197 Sum_probs=46.6
Q ss_pred eEeeeeecCCCChHHHHhhhhHHHHH-HHhc--C--CceEEEeeccCCCCcceEe--------------ecC---CCCcc
Q 035971 64 YKLDYCYEQNEGNGIIFAREVKPLIS-EVFN--G--INATIVACGAKGSGKTRVI--------------QGS---YEEPG 121 (614)
Q Consensus 64 F~FD~VF~~~asQ~eVf~~~v~plV~-~vl~--G--~N~tI~aYGqTGSGKTyTm--------------~G~---~~~~G 121 (614)
-+||.|-+-+.--+++.+.+.-|+.. ..+. | .--.|+-||+.|+|||.+. -|+ ....|
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vG 258 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLG 258 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSS
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCc
Confidence 44566555554445555544444432 2232 3 2357999999999999643 222 24567
Q ss_pred hhHHHHHHHHhhccccC
Q 035971 122 LAALAVDEILSISEKMG 138 (614)
Q Consensus 122 Lipral~~LF~~~~~~~ 138 (614)
--.+.++.+|..+....
T Consensus 259 esek~ir~lF~~Ar~~a 275 (437)
T 4b4t_I 259 DGPRLCRQIFKVAGENA 275 (437)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHhcC
Confidence 78888999998877544
No 104
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=72.80 E-value=1.1 Score=40.69 Aligned_cols=17 Identities=29% Similarity=0.620 Sum_probs=14.4
Q ss_pred eEEEeeccCCCCcceEe
Q 035971 97 ATIVACGAKGSGKTRVI 113 (614)
Q Consensus 97 ~tI~aYGqTGSGKTyTm 113 (614)
..++-+|++|+|||+.+
T Consensus 37 ~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp SEEEEESSSTTTTCHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45677999999999876
No 105
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=72.61 E-value=1.8 Score=48.48 Aligned_cols=48 Identities=21% Similarity=0.295 Sum_probs=35.5
Q ss_pred HhhhccCCHHhhccCCCCCHHHHHHHHHHHHhCCCCCCCHHhhhhcCCC
Q 035971 549 LKLLNTGGKEDLKRLKGIGEKRASYILELREESPEPFKNLDDLKDIGLS 597 (614)
Q Consensus 549 ~~~lN~A~~~~L~~l~gig~~~A~~Ii~~R~~~gg~f~~~~dL~~~gl~ 597 (614)
++.|-.|+.++|.+|+|||+.+|+.|++|=..- ..-.-++.|.+.|+.
T Consensus 535 l~~l~~a~~e~l~~i~giG~~~A~si~~ff~~~-~n~~~i~~L~~~Gv~ 582 (586)
T 4glx_A 535 LEALEAASIEELQKVPDVGIVVASHVHNFFAEE-SNRNVISELLAEGVH 582 (586)
T ss_dssp HHHHHHCCHHHHTTSTTCCHHHHHHHHHHHHSH-HHHHHHHHHHHTTCB
T ss_pred HHHHHccCHHHHhcCCCccHHHHHHHHHHHcCH-HHHHHHHHHHHcCCC
Confidence 344567999999999999999999999985421 113456777777763
No 106
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=72.43 E-value=2.6 Score=47.92 Aligned_cols=47 Identities=21% Similarity=0.303 Sum_probs=36.1
Q ss_pred HhhhccCCHHhhccCCCCCHHHHHHHHHHHHhCCCCCCCHHhhhhcCC
Q 035971 549 LKLLNTGGKEDLKRLKGIGEKRASYILELREESPEPFKNLDDLKDIGL 596 (614)
Q Consensus 549 ~~~lN~A~~~~L~~l~gig~~~A~~Ii~~R~~~gg~f~~~~dL~~~gl 596 (614)
++.|-.|+.++|..++|||+++|+.|+++-..- ....-++.|...|+
T Consensus 535 l~~l~~As~eeL~~i~GIG~~~A~sI~~ff~~~-~~~~~i~~L~~~gv 581 (671)
T 2owo_A 535 LEALEAASIEELQKVPDVGIVVASHVHNFFAEE-SNRNVISELLAEGV 581 (671)
T ss_dssp HHHHHTCCHHHHTTSTTCCHHHHHHHHHHHTCH-HHHHHHHHHHHHTC
T ss_pred HHHHHhCCHHHHhhcCCCCHHHHHHHHHHHHhH-HHHHHHHHHHHcCC
Confidence 445778999999999999999999999986421 11345677777676
No 107
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=72.37 E-value=1.2 Score=41.20 Aligned_cols=21 Identities=24% Similarity=0.339 Sum_probs=16.0
Q ss_pred cCCceEEEeeccCCCCcceEe
Q 035971 93 NGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 93 ~G~N~tI~aYGqTGSGKTyTm 113 (614)
.+....++-||++|+|||+.+
T Consensus 35 ~~~~~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 35 RKNIPHLLFSGPPGTGKTATA 55 (226)
T ss_dssp TTCCCCEEEECSTTSSHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 343334999999999999764
No 108
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=72.33 E-value=1.4 Score=41.72 Aligned_cols=24 Identities=29% Similarity=0.518 Sum_probs=19.2
Q ss_pred HHHHHhcCCceEEEeeccCCCCcceE
Q 035971 87 LISEVFNGINATIVACGAKGSGKTRV 112 (614)
Q Consensus 87 lV~~vl~G~N~tI~aYGqTGSGKTyT 112 (614)
.+..+++|.+ ++..++||||||.+
T Consensus 44 ~i~~~~~~~~--~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 44 AIMPIIEGHD--VLAQAQSGTGKTGT 67 (224)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHhcCCC--EEEECCCCCcHHHH
Confidence 4556678876 68889999999977
No 109
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=72.26 E-value=3.4 Score=44.06 Aligned_cols=45 Identities=24% Similarity=0.478 Sum_probs=36.1
Q ss_pred HHhhccCCCCCHHHHHHHHHHHHhCCCCC-----CCHHhhhhcCCCHHHHHHHH
Q 035971 557 KEDLKRLKGIGEKRASYILELREESPEPF-----KNLDDLKDIGLSAKQIKGMM 605 (614)
Q Consensus 557 ~~~L~~l~gig~~~A~~Ii~~R~~~gg~f-----~~~~dL~~~gl~~~~~~~~~ 605 (614)
..-|.+|||||+.+|++++++= |+ . -++++|...||+.+++.+++
T Consensus 467 eamLtAIaGIGp~tAeRLLEkF---GS-Ve~Vm~AteDELRedGIGekqarrI~ 516 (685)
T 4gfj_A 467 YASLISIRGIDRERAERLLKKY---GG-YSKVREAGVEELREDGLTDAQIRELK 516 (685)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHH---TS-HHHHHHSCHHHHHHTTCCHHHHHHHH
T ss_pred eeeeeccCCCCHHHHHHHHHHh---cC-HHHHHhCCHHHHHHccccHHHHHHHh
Confidence 4557889999999999999852 22 2 36789977999999999885
No 110
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=71.86 E-value=1.9 Score=41.68 Aligned_cols=52 Identities=21% Similarity=0.337 Sum_probs=33.9
Q ss_pred CCHHhhccCCCCCHHHHHHHHHHHHhCCCCCCCHHhh-----hhcCC----CHHHHHHHHHHH
Q 035971 555 GGKEDLKRLKGIGEKRASYILELREESPEPFKNLDDL-----KDIGL----SAKQIKGMMKKE 608 (614)
Q Consensus 555 A~~~~L~~l~gig~~~A~~Ii~~R~~~gg~f~~~~dL-----~~~gl----~~~~~~~~~~~~ 608 (614)
.+.++|++|||||++.|+.|+-+=-.... | -+|+- ..+|+ +.+.+++.+...
T Consensus 106 ~~~~~L~~l~GIG~~tA~~il~~~~~~~~-~-~vD~~v~Rv~~rlgl~~~~~~~~~~~~~~~~ 166 (211)
T 2abk_A 106 EDRAALEALPGVGRKTANVVLNTAFGWPT-I-AVDTHIFRVCNRTQFAPGKNVEQVEEKLLKV 166 (211)
T ss_dssp SCHHHHHHSTTCCHHHHHHHHHHHHCCCC-C-CCCHHHHHHHHHHCSSCCSSHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCChHHHHHHHHHHCCCCc-C-CcCHHHHHHHHHhCCCCCCCHHHHHHHHHHh
Confidence 56789999999999999999987533322 3 22221 22555 456666665543
No 111
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=71.65 E-value=2.1 Score=41.96 Aligned_cols=52 Identities=21% Similarity=0.431 Sum_probs=34.5
Q ss_pred CCHHhhccCCCCCHHHHHHHHHHHHhCCCCCCCHHhhh-----hcCC-----CHHHHHHHHHHH
Q 035971 555 GGKEDLKRLKGIGEKRASYILELREESPEPFKNLDDLK-----DIGL-----SAKQIKGMMKKE 608 (614)
Q Consensus 555 A~~~~L~~l~gig~~~A~~Ii~~R~~~gg~f~~~~dL~-----~~gl-----~~~~~~~~~~~~ 608 (614)
.+.++|++|||||++.|+.|+-+=-.... |- +|+.. .+|+ +.+.+++++...
T Consensus 110 ~~~~~L~~lpGIG~~TA~~il~~a~g~~~-~~-vD~~v~Rv~~rlg~~~~~~~~~~~~~~l~~~ 171 (226)
T 1orn_A 110 RDRDELMKLPGVGRKTANVVVSVAFGVPA-IA-VDTHVERVSKRLGFCRWDDSVLEVEKTLMKI 171 (226)
T ss_dssp SCHHHHTTSTTCCHHHHHHHHHHHHCCCC-CC-CCHHHHHHHHHHTSSCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCccHHHHHHHHHHHCCCce-ee-eCHHHHHHHHHhCCCCCCCCHHHHHHHHHHh
Confidence 46899999999999999999987533322 32 44432 2444 456666665543
No 112
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=71.56 E-value=2.4 Score=44.92 Aligned_cols=28 Identities=50% Similarity=0.730 Sum_probs=24.4
Q ss_pred HhhhccCCHHhhccCCCCCHHHHHHHHH
Q 035971 549 LKLLNTGGKEDLKRLKGIGEKRASYILE 576 (614)
Q Consensus 549 ~~~lN~A~~~~L~~l~gig~~~A~~Ii~ 576 (614)
+..|=.|+.+||+.+.|||+++|++|-+
T Consensus 338 Lq~Il~AS~eEL~~VeGIGe~rAr~Ire 365 (377)
T 3c1y_A 338 LDQISKASVEDLKKVEGIGEKRARAISE 365 (377)
T ss_dssp HHHHTTCCHHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHHhCCHHHHHhccCccHHHHHHHHH
Confidence 3446789999999999999999999965
No 113
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=71.37 E-value=1.6 Score=40.68 Aligned_cols=23 Identities=22% Similarity=0.471 Sum_probs=17.9
Q ss_pred HHHHhcCCceEEEeeccCCCCcceE
Q 035971 88 ISEVFNGINATIVACGAKGSGKTRV 112 (614)
Q Consensus 88 V~~vl~G~N~tI~aYGqTGSGKTyT 112 (614)
+..+++|.+ ++..++||||||.+
T Consensus 32 i~~~~~~~~--~li~~~TGsGKT~~ 54 (207)
T 2gxq_A 32 LPLALEGKD--LIGQARTGTGKTLA 54 (207)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHcCCCC--EEEECCCCChHHHH
Confidence 445677876 67778999999976
No 114
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=70.04 E-value=1.2 Score=44.46 Aligned_cols=51 Identities=18% Similarity=0.229 Sum_probs=30.8
Q ss_pred eeEeeeeecCCCChHHHHhhhhHHHHH-HHhc---CCceEEEeeccCCCCcceEe
Q 035971 63 CYKLDYCYEQNEGNGIIFAREVKPLIS-EVFN---GINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 63 ~F~FD~VF~~~asQ~eVf~~~v~plV~-~vl~---G~N~tI~aYGqTGSGKTyTm 113 (614)
...||.+.+.+..-+.+.+....|+.. ..+. .....++-||++|+|||+..
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 356788887654444444433333321 1222 23567999999999999654
No 115
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=68.87 E-value=2 Score=42.05 Aligned_cols=22 Identities=45% Similarity=0.513 Sum_probs=20.1
Q ss_pred CHHhhc-cCCCCCHHHHHHHHHH
Q 035971 556 GKEDLK-RLKGIGEKRASYILEL 577 (614)
Q Consensus 556 ~~~~L~-~l~gig~~~A~~Ii~~ 577 (614)
+.++|+ +|||||++.|.-|+-+
T Consensus 122 ~re~Ll~~LpGVG~KTA~~vL~~ 144 (214)
T 3fhf_A 122 AREFLVRNIKGIGYKEASHFLRN 144 (214)
T ss_dssp HHHHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHH
Confidence 567899 9999999999999987
No 116
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=68.43 E-value=1.1 Score=46.51 Aligned_cols=50 Identities=20% Similarity=0.190 Sum_probs=28.2
Q ss_pred eEeeeeecCCCChHHHHhhhhHHHHHHH----hcCCceEEEeeccCCCCcceEe
Q 035971 64 YKLDYCYEQNEGNGIIFAREVKPLISEV----FNGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 64 F~FD~VF~~~asQ~eVf~~~v~plV~~v----l~G~N~tI~aYGqTGSGKTyTm 113 (614)
..||.+.+.+..-+.+.+.+..|+...- +.+....|+-||++|+|||+..
T Consensus 81 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 81 VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHH
Confidence 4566666644333333333332222111 2345667999999999999654
No 117
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=68.35 E-value=2 Score=46.17 Aligned_cols=28 Identities=21% Similarity=0.402 Sum_probs=22.6
Q ss_pred HHHHHHhcCCceEEEeeccCCCCcceEe
Q 035971 86 PLISEVFNGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 86 plV~~vl~G~N~tI~aYGqTGSGKTyTm 113 (614)
+++..++..-...+...|+||||||.+|
T Consensus 157 ~~L~~l~~~~ggii~I~GpnGSGKTTlL 184 (418)
T 1p9r_A 157 DNFRRLIKRPHGIILVTGPTGSGKSTTL 184 (418)
T ss_dssp HHHHHHHTSSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 4566666666678999999999999887
No 118
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=68.28 E-value=3 Score=40.96 Aligned_cols=44 Identities=16% Similarity=0.395 Sum_probs=29.7
Q ss_pred HHhhccCCCCCHHHHHHHHHHHHhCCCCC-----CCHHhhhhcCCCH-HHHHHHH
Q 035971 557 KEDLKRLKGIGEKRASYILELREESPEPF-----KNLDDLKDIGLSA-KQIKGMM 605 (614)
Q Consensus 557 ~~~L~~l~gig~~~A~~Ii~~R~~~gg~f-----~~~~dL~~~gl~~-~~~~~~~ 605 (614)
...|..|||||++.|+.++++ .|. + .+++||.++ ++. +.++.+.
T Consensus 167 ~s~LdgIpGIG~k~ak~Ll~~---FgS-l~~i~~As~EeL~~V-IG~~~~A~~I~ 216 (220)
T 2nrt_A 167 RSVLDNVPGIGPIRKKKLIEH---FGS-LENIRSASLEEIARV-IGSTEIARRVL 216 (220)
T ss_dssp HHHHTTSTTCCHHHHHHHHHH---HCS-HHHHHTSCHHHHHHH-HTCHHHHHHHH
T ss_pred cccccCCCCcCHHHHHHHHHH---cCC-HHHHHhCCHHHHHHH-hChHHHHHHHH
Confidence 456899999999999999985 111 2 255666666 555 5555443
No 119
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=67.78 E-value=2.1 Score=36.37 Aligned_cols=34 Identities=26% Similarity=0.442 Sum_probs=27.5
Q ss_pred CHHhhccCCCCCHHHHHHHHHHHHhCCCCCCCHHhhhhcC
Q 035971 556 GKEDLKRLKGIGEKRASYILELREESPEPFKNLDDLKDIG 595 (614)
Q Consensus 556 ~~~~L~~l~gig~~~A~~Ii~~R~~~gg~f~~~~dL~~~g 595 (614)
+..+|..||+||+++++... +. | +.+++||...|
T Consensus 2 ~~~~L~~LPNiG~~~e~~L~----~v-G-I~s~e~L~~~G 35 (93)
T 3bqs_A 2 SLANLSELPNIGKVLEQDLI----KA-G-IKTPVELKDVG 35 (93)
T ss_dssp CCSCGGGSTTCCHHHHHHHH----HT-T-CCSHHHHHHHH
T ss_pred ChHHhhcCCCCCHHHHHHHH----Hc-C-CCCHHHHHhCC
Confidence 34679999999999999873 24 5 99999998765
No 120
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=67.67 E-value=1.5 Score=47.27 Aligned_cols=49 Identities=18% Similarity=0.328 Sum_probs=28.5
Q ss_pred ceeeEeeeeecCCCChHHHHhhhhHHHHHHHhcCCceEEEeeccCCCCcceEe
Q 035971 61 KECYKLDYCYEQNEGNGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 61 ~~~F~FD~VF~~~asQ~eVf~~~v~plV~~vl~G~N~tI~aYGqTGSGKTyTm 113 (614)
...|+||..... .++...+. .+..+... .|....++-||++|+|||+.+
T Consensus 99 ~~~~tfd~fv~g-~~n~~a~~-~~~~~a~~--~~~~~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 99 NPDYTFENFVVG-PGNSFAYH-AALEVAKH--PGRYNPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp CTTCSGGGCCCC-TTTHHHHH-HHHHHHHS--TTSSCCEEEECSSSSSHHHHH
T ss_pred CCCCChhhcCCC-CchHHHHH-HHHHHHhC--CCCCCeEEEECCCCCCHHHHH
Confidence 346788875522 23333443 23333332 121346889999999999876
No 121
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.53 E-value=4.2 Score=43.91 Aligned_cols=50 Identities=26% Similarity=0.279 Sum_probs=31.4
Q ss_pred eeEeeeeecCCCChHHHHhhhhHHHHH-HHhc--CC--ceEEEeeccCCCCcceE
Q 035971 63 CYKLDYCYEQNEGNGIIFAREVKPLIS-EVFN--GI--NATIVACGAKGSGKTRV 112 (614)
Q Consensus 63 ~F~FD~VF~~~asQ~eVf~~~v~plV~-~vl~--G~--N~tI~aYGqTGSGKTyT 112 (614)
..+||.|-+-+.--+++.+.+.-|+.. ..+. |. .-.|+-||+.|+|||++
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTll 231 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLL 231 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHH
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHH
Confidence 345677776655555565555555432 2333 22 34699999999999954
No 122
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=67.28 E-value=2.7 Score=41.40 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.4
Q ss_pred CHHhhccCCCCCHHHHHHHHHHH
Q 035971 556 GKEDLKRLKGIGEKRASYILELR 578 (614)
Q Consensus 556 ~~~~L~~l~gig~~~A~~Ii~~R 578 (614)
..++|++|||||++.|+.|+-+=
T Consensus 136 ~~~~L~~lpGIG~kTA~~ill~a 158 (233)
T 2h56_A 136 VIEKLTAIKGIGQWTAEMFMMFS 158 (233)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHHT
T ss_pred HHHHHHhCCCcCHHHHHHHHHHh
Confidence 46789999999999999999874
No 123
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=67.19 E-value=1.3 Score=44.06 Aligned_cols=51 Identities=18% Similarity=0.195 Sum_probs=27.6
Q ss_pred eeeEeeeeecCCCChHHHHhhhhHHHH-HHHhcCC----ceEEEeeccCCCCcceEe
Q 035971 62 ECYKLDYCYEQNEGNGIIFAREVKPLI-SEVFNGI----NATIVACGAKGSGKTRVI 113 (614)
Q Consensus 62 ~~F~FD~VF~~~asQ~eVf~~~v~plV-~~vl~G~----N~tI~aYGqTGSGKTyTm 113 (614)
..+.||.+.+.+....++-+ .+..+- ..++.+. ...++-||++|+|||+.+
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~-l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHH-HHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 35778887766543333322 111110 0122221 223899999999999765
No 124
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=66.50 E-value=3.2 Score=38.62 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=18.4
Q ss_pred HHHHHhcCCceEEEeeccCCCCcceEe
Q 035971 87 LISEVFNGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 87 lV~~vl~G~N~tI~aYGqTGSGKTyTm 113 (614)
.+..+++|.+ ++..++||||||.+.
T Consensus 33 ~i~~~~~~~~--~lv~apTGsGKT~~~ 57 (206)
T 1vec_A 33 SIPIALSGRD--ILARAKNGTGKSGAY 57 (206)
T ss_dssp HHHHHHTTCC--EEEECCSSSTTHHHH
T ss_pred HHHHHccCCC--EEEECCCCCchHHHH
Confidence 3445667866 577889999999653
No 125
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=66.48 E-value=0.93 Score=46.40 Aligned_cols=20 Identities=30% Similarity=0.418 Sum_probs=16.5
Q ss_pred CCceEEEeeccCCCCcceEe
Q 035971 94 GINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 94 G~N~tI~aYGqTGSGKTyTm 113 (614)
+....++-||++|+|||+.+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHH
Confidence 45567999999999999665
No 126
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=66.09 E-value=3.3 Score=47.14 Aligned_cols=48 Identities=27% Similarity=0.324 Sum_probs=36.2
Q ss_pred HhhhccCCHHhhccCCCCCHHHHHHHHHHHHhCCCCCCCHHhhhhcCCC
Q 035971 549 LKLLNTGGKEDLKRLKGIGEKRASYILELREESPEPFKNLDDLKDIGLS 597 (614)
Q Consensus 549 ~~~lN~A~~~~L~~l~gig~~~A~~Ii~~R~~~gg~f~~~~dL~~~gl~ 597 (614)
++.|-.|+.++|..++|||+++|+.|+++-..- ..-.-++.|...|+.
T Consensus 530 l~~l~~As~eeL~~I~GIG~~~A~sI~~ff~~~-~~~~~i~~L~~~gv~ 577 (667)
T 1dgs_A 530 MDRLLEASLEELIEVEEVGELTARAILETLKDP-AFRDLVRRLKEAGVS 577 (667)
T ss_dssp HHHHTTCCHHHHHTSTTCCHHHHHHHHHHHHCH-HHHHHHHHHHHTTCC
T ss_pred HHHHHhCCHHHHHhccCcCHHHHHHHHHHHhhH-HHHHHHHHHHHcCCc
Confidence 445678999999999999999999999986421 113456777777763
No 127
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=65.42 E-value=3.8 Score=34.66 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=21.9
Q ss_pred CCHHhhccCCCCCHHHHHHHHHHH
Q 035971 555 GGKEDLKRLKGIGEKRASYILELR 578 (614)
Q Consensus 555 A~~~~L~~l~gig~~~A~~Ii~~R 578 (614)
++.++|..+||||+++|++|++..
T Consensus 67 ~s~edL~~v~Gig~k~~~~l~~~g 90 (98)
T 2edu_A 67 SQVEDLERVEGITGKQMESFLKAN 90 (98)
T ss_dssp SSGGGGGGSTTCCHHHHHHHHHHH
T ss_pred CCHHHHHhCCCCCHHHHHHHHHCc
Confidence 788999999999999999998764
No 128
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=65.31 E-value=1.8 Score=43.24 Aligned_cols=20 Identities=30% Similarity=0.376 Sum_probs=16.0
Q ss_pred CCceEEEeeccCCCCcceEe
Q 035971 94 GINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 94 G~N~tI~aYGqTGSGKTyTm 113 (614)
.....++-||++|+|||+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 34457999999999999754
No 129
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=65.23 E-value=2.2 Score=44.72 Aligned_cols=28 Identities=21% Similarity=0.399 Sum_probs=22.0
Q ss_pred HHHHHHhcCCceEEEeeccCCCCcceEe
Q 035971 86 PLISEVFNGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 86 plV~~vl~G~N~tI~aYGqTGSGKTyTm 113 (614)
+.+.+++.-....+...|++|||||.+|
T Consensus 113 ~~l~~l~~~~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 113 EVFKRVSDVPRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp HHHHHHHHCSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHHHhCCCCEEEEECCCCCCHHHHH
Confidence 4555666555668899999999999887
No 130
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=65.17 E-value=1.6 Score=44.78 Aligned_cols=50 Identities=18% Similarity=0.238 Sum_probs=29.8
Q ss_pred eEeeeeecCCCChHHHHhhhhHHHHH-HHhcCC---ceEEEeeccCCCCcceEe
Q 035971 64 YKLDYCYEQNEGNGIIFAREVKPLIS-EVFNGI---NATIVACGAKGSGKTRVI 113 (614)
Q Consensus 64 F~FD~VF~~~asQ~eVf~~~v~plV~-~vl~G~---N~tI~aYGqTGSGKTyTm 113 (614)
..||.|.+.+.--+.+.+.+..|+-. .++.|. ...|+-||++|+|||+..
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 45777777654444444433333321 333442 246899999999999654
No 131
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=65.06 E-value=3.1 Score=42.62 Aligned_cols=47 Identities=17% Similarity=0.140 Sum_probs=31.4
Q ss_pred eeeEeeeeecCCCChHHHHhhhhHHHHHHHhcCCce--EEEeeccCCCCcceEe
Q 035971 62 ECYKLDYCYEQNEGNGIIFAREVKPLISEVFNGINA--TIVACGAKGSGKTRVI 113 (614)
Q Consensus 62 ~~F~FD~VF~~~asQ~eVf~~~v~plV~~vl~G~N~--tI~aYGqTGSGKTyTm 113 (614)
..+.||.+++.+ .+.+ .+..+++.+-.|... .++-||++|+|||+..
T Consensus 39 p~~~~~~ivG~~----~~~~-~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 39 PRQASQGMVGQL----AARR-AAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp BCSEETTEESCH----HHHH-HHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHH
T ss_pred cCcchhhccChH----HHHH-HHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHH
Confidence 346678777643 3332 344555566666654 8999999999999654
No 132
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=64.77 E-value=3.5 Score=40.70 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=20.5
Q ss_pred CHHhhccCCCCCHHHHHHHHHHH
Q 035971 556 GKEDLKRLKGIGEKRASYILELR 578 (614)
Q Consensus 556 ~~~~L~~l~gig~~~A~~Ii~~R 578 (614)
..++|++|||||++.|+.|+-+=
T Consensus 148 ~~~~L~~l~GIG~~TA~~ill~a 170 (232)
T 4b21_A 148 LMESLSKIKGVKRWTIEMYSIFT 170 (232)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHT
T ss_pred HHHHHHhCCCcCHHHHHHHHHHh
Confidence 46789999999999999999875
No 133
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=64.73 E-value=3.4 Score=40.26 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=18.7
Q ss_pred HhhccCCCCCHHHHHHHHHHHH
Q 035971 558 EDLKRLKGIGEKRASYILELRE 579 (614)
Q Consensus 558 ~~L~~l~gig~~~A~~Ii~~R~ 579 (614)
++|..|||||+|.|+++.-|=-
T Consensus 26 ~~l~~LPGIG~KsA~RlA~hLL 47 (212)
T 3vdp_A 26 EELSKLPGIGPKTAQRLAFFII 47 (212)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHT
T ss_pred HHHHHCCCCCHHHHHHHHHHHH
Confidence 4788999999999999976653
No 134
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=64.56 E-value=3.3 Score=44.46 Aligned_cols=47 Identities=13% Similarity=0.067 Sum_probs=31.3
Q ss_pred eeeEeeeeecCCCChHHHHhhhhHHHHHHHhcCCc--eEEEeeccCCCCcceEe
Q 035971 62 ECYKLDYCYEQNEGNGIIFAREVKPLISEVFNGIN--ATIVACGAKGSGKTRVI 113 (614)
Q Consensus 62 ~~F~FD~VF~~~asQ~eVf~~~v~plV~~vl~G~N--~tI~aYGqTGSGKTyTm 113 (614)
..|.||.+.+. +++.+ .+..+++.+..|.. ..++-||++|+|||+..
T Consensus 32 ~~~~~~~iiG~----~~~~~-~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 32 AKQAASGLVGQ----ENARE-ACGVIVELIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp BCSEETTEESC----HHHHH-HHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred hhhchhhccCH----HHHHH-HHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence 34667777764 44443 34455666666654 36888999999999764
No 135
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=64.45 E-value=3.4 Score=39.82 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=19.2
Q ss_pred HHHHHhcCCceEEEeeccCCCCcceE
Q 035971 87 LISEVFNGINATIVACGAKGSGKTRV 112 (614)
Q Consensus 87 lV~~vl~G~N~tI~aYGqTGSGKTyT 112 (614)
.+..+++|.+ ++..++||||||.+
T Consensus 59 ~i~~~~~~~~--~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 59 AIPVMLHGRE--LLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHH
Confidence 4556778877 68889999999976
No 136
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=64.17 E-value=2.7 Score=39.68 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=18.8
Q ss_pred HHHHHhcCCceEEEeeccCCCCcceEe
Q 035971 87 LISEVFNGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 87 lV~~vl~G~N~tI~aYGqTGSGKTyTm 113 (614)
.+..+++|.+ ++..++||||||.+.
T Consensus 44 ~i~~~~~~~~--~li~~~TGsGKT~~~ 68 (220)
T 1t6n_A 44 CIPQAILGMD--VLCQAKSGMGKTAVF 68 (220)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCchhhhh
Confidence 3456677877 667789999999753
No 137
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=63.27 E-value=2.9 Score=42.78 Aligned_cols=30 Identities=20% Similarity=0.310 Sum_probs=20.6
Q ss_pred hHHHHHHHhcCCc-e--EEEeeccCCCCcceEe
Q 035971 84 VKPLISEVFNGIN-A--TIVACGAKGSGKTRVI 113 (614)
Q Consensus 84 v~plV~~vl~G~N-~--tI~aYGqTGSGKTyTm 113 (614)
+...+...+.|.. . +++-||++|+|||+++
T Consensus 29 l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 29 LDILLGNWLRNPGHHYPRATLLGRPGTGKTVTL 61 (389)
T ss_dssp HHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred HHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence 3344555555533 4 7899999999999664
No 138
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=62.53 E-value=4 Score=40.06 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=19.9
Q ss_pred HHhhccCCCCCHHHHHHHHHHH
Q 035971 557 KEDLKRLKGIGEKRASYILELR 578 (614)
Q Consensus 557 ~~~L~~l~gig~~~A~~Ii~~R 578 (614)
.++|++|||||++.|+.|+-+=
T Consensus 138 ~~~L~~l~GIG~~TA~~ill~~ 159 (228)
T 3s6i_A 138 IERLTQIKGIGRWTVEMLLIFS 159 (228)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHT
T ss_pred HHHHHhCCCcCHHHHHHHHHHh
Confidence 6789999999999999999764
No 139
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=62.39 E-value=3.7 Score=41.93 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.5
Q ss_pred CCHHhhcc-CCCCCHHHHHHHHHHH
Q 035971 555 GGKEDLKR-LKGIGEKRASYILELR 578 (614)
Q Consensus 555 A~~~~L~~-l~gig~~~A~~Ii~~R 578 (614)
.+.++|.+ |||||++.|..|+-+=
T Consensus 125 ~~~~~Ll~~LpGIG~kTA~~iL~~a 149 (287)
T 3n5n_X 125 RTAETLQQLLPGVGRYTAGAIASIA 149 (287)
T ss_dssp SSHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHh
Confidence 46899998 9999999999999765
No 140
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=62.36 E-value=2.3 Score=40.99 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=19.1
Q ss_pred HHHHHhcCCceEEEeeccCCCCcceE
Q 035971 87 LISEVFNGINATIVACGAKGSGKTRV 112 (614)
Q Consensus 87 lV~~vl~G~N~tI~aYGqTGSGKTyT 112 (614)
.+..+++|.| ++..++||||||.+
T Consensus 60 ai~~i~~~~~--~li~apTGsGKT~~ 83 (237)
T 3bor_A 60 AIIPCIKGYD--VIAQAQSGTGKTAT 83 (237)
T ss_dssp HHHHHHTTCC--EEECCCSSHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHH
Confidence 4556678877 67899999999976
No 141
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=62.20 E-value=3.9 Score=34.25 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=20.6
Q ss_pred hccCCHHhhccCCCCCHHHHHHHHH
Q 035971 552 LNTGGKEDLKRLKGIGEKRASYILE 576 (614)
Q Consensus 552 lN~A~~~~L~~l~gig~~~A~~Ii~ 576 (614)
+=-.+..|+..|+|||+++|+.|=+
T Consensus 52 ~~i~s~~e~~~L~giG~ki~~~L~e 76 (87)
T 2kp7_A 52 LPLRSGKEAKILQHFGDRLCRMLDE 76 (87)
T ss_dssp SCCCSHHHHHTCTTTCHHHHHHHHH
T ss_pred CCCCCHHHHHHhhcccHHHHHHHHH
Confidence 3456789999999999999988754
No 142
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=62.15 E-value=3.9 Score=42.94 Aligned_cols=25 Identities=28% Similarity=0.518 Sum_probs=22.5
Q ss_pred CCHHhhccCCCCCHHHHHHHHHHHH
Q 035971 555 GGKEDLKRLKGIGEKRASYILELRE 579 (614)
Q Consensus 555 A~~~~L~~l~gig~~~A~~Ii~~R~ 579 (614)
.+.++|++|||||++.|+.|+-+=-
T Consensus 115 ~~~~~L~~l~GIG~~tA~~il~~~~ 139 (369)
T 3fsp_A 115 DDPDEFSRLKGVGPYTVGAVLSLAY 139 (369)
T ss_dssp CSHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred hHHHHHhcCCCcCHHHHHHHHHHHC
Confidence 4789999999999999999998853
No 143
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=62.12 E-value=3.9 Score=40.05 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=19.7
Q ss_pred HHhhccCCCCCHHHHHHHHHHH
Q 035971 557 KEDLKRLKGIGEKRASYILELR 578 (614)
Q Consensus 557 ~~~L~~l~gig~~~A~~Ii~~R 578 (614)
.++|++|||||++.|+.|+-+=
T Consensus 145 ~~~L~~l~GIG~~TA~~ill~~ 166 (225)
T 2yg9_A 145 IAELVQLPGIGRWTAEMFLLFA 166 (225)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHT
T ss_pred HHHHHcCCCCCHHHHHHHHHHh
Confidence 5789999999999999999764
No 144
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=61.99 E-value=2.9 Score=41.24 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=18.9
Q ss_pred HHHHHhcCCceEEEeeccCCCCcceE
Q 035971 87 LISEVFNGINATIVACGAKGSGKTRV 112 (614)
Q Consensus 87 lV~~vl~G~N~tI~aYGqTGSGKTyT 112 (614)
++..++.|.| ++..++||||||.+
T Consensus 84 ~i~~~~~~~~--~lv~a~TGsGKT~~ 107 (262)
T 3ly5_A 84 SIRPLLEGRD--LLAAAKTGSGKTLA 107 (262)
T ss_dssp HHHHHHHTCC--CEECCCTTSCHHHH
T ss_pred HHHHHhCCCc--EEEEccCCCCchHH
Confidence 4556677876 68889999999965
No 145
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=61.90 E-value=1.5 Score=42.94 Aligned_cols=50 Identities=20% Similarity=0.201 Sum_probs=27.7
Q ss_pred eeEeeeeecCCCChHHHHhhhhHHHHH-HHhc----CCceEEEeeccCCCCcceEe
Q 035971 63 CYKLDYCYEQNEGNGIIFAREVKPLIS-EVFN----GINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 63 ~F~FD~VF~~~asQ~eVf~~~v~plV~-~vl~----G~N~tI~aYGqTGSGKTyTm 113 (614)
.+.||.+.+.+..-+++.+ .+..+.. ..+. .....++-||++|+|||+.+
T Consensus 8 ~~~~~~i~G~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAE-LVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHH-HHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHH
T ss_pred CCCHHHhcCcHHHHHHHHH-HHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHH
Confidence 4567888776544333332 2221110 0111 23446999999999999654
No 146
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=61.89 E-value=4.1 Score=41.17 Aligned_cols=46 Identities=26% Similarity=0.340 Sum_probs=30.1
Q ss_pred HHhhccCCCCCHHHHHHHHHHHHhCCCC--CCCHHhhh--h--cCCCHHHHHHHH
Q 035971 557 KEDLKRLKGIGEKRASYILELREESPEP--FKNLDDLK--D--IGLSAKQIKGMM 605 (614)
Q Consensus 557 ~~~L~~l~gig~~~A~~Ii~~R~~~gg~--f~~~~dL~--~--~gl~~~~~~~~~ 605 (614)
.++|++|||||++.|+.|+-+= .|-| | -++|+. + -..+.+.+.+++
T Consensus 206 ~~~L~~lpGIG~~TA~~ill~~--lg~~d~~-pvdd~~~r~~l~~~~~~~~~~~~ 257 (282)
T 1mpg_A 206 MKTLQTFPGIGRWTANYFALRG--WQAKDVF-LPDDYLIKQRFPGMTPAQIRRYA 257 (282)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHH--SCCSSCC-CTTCHHHHHHSTTCCHHHHHHHH
T ss_pred HHHHhcCCCcCHHHHHHHHHHh--CCCCCcC-ccccHHHHHHhccCCHHHHHHHH
Confidence 6889999999999999998864 2223 4 334433 2 234556665554
No 147
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=61.85 E-value=4 Score=39.01 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=18.4
Q ss_pred HHHHHhcCCceEEEeeccCCCCcceE
Q 035971 87 LISEVFNGINATIVACGAKGSGKTRV 112 (614)
Q Consensus 87 lV~~vl~G~N~tI~aYGqTGSGKTyT 112 (614)
.+..+++|.+ ++..++||||||.+
T Consensus 55 ~i~~~~~~~~--~li~a~TGsGKT~~ 78 (236)
T 2pl3_A 55 TIGLALQGKD--VLGAAKTGSGKTLA 78 (236)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHHhCCCC--EEEEeCCCCcHHHH
Confidence 3456678877 56778999999975
No 148
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=61.51 E-value=1.8 Score=45.30 Aligned_cols=51 Identities=22% Similarity=0.301 Sum_probs=28.6
Q ss_pred eeEeeeeecCCCChHHHHhhhhHHHHH-HHhc---CCceEEEeeccCCCCcceEe
Q 035971 63 CYKLDYCYEQNEGNGIIFAREVKPLIS-EVFN---GINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 63 ~F~FD~VF~~~asQ~eVf~~~v~plV~-~vl~---G~N~tI~aYGqTGSGKTyTm 113 (614)
.+.||.+.+.+.--+.+.+.+..++.. .++. .-...|+-||++|+|||+..
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHH
T ss_pred CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHH
Confidence 456777776544333343333333221 1111 22357999999999999654
No 149
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=60.97 E-value=4.2 Score=38.62 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=18.5
Q ss_pred HHHHHhcCCceEEEeeccCCCCcceE
Q 035971 87 LISEVFNGINATIVACGAKGSGKTRV 112 (614)
Q Consensus 87 lV~~vl~G~N~tI~aYGqTGSGKTyT 112 (614)
.+..+++|.|. +..++||||||.+
T Consensus 50 ~i~~~~~~~~~--l~~apTGsGKT~~ 73 (228)
T 3iuy_A 50 AWPIILQGIDL--IVVAQTGTGKTLS 73 (228)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHH
T ss_pred HHHHHhCCCCE--EEECCCCChHHHH
Confidence 34566788775 7779999999976
No 150
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.60 E-value=3.9 Score=43.72 Aligned_cols=76 Identities=21% Similarity=0.264 Sum_probs=50.2
Q ss_pred eEeeeeecCCCChHHHHhhhhHHHHH-HHhc--CC--ceEEEeeccCCCCcceEe--------------ecC---CCCcc
Q 035971 64 YKLDYCYEQNEGNGIIFAREVKPLIS-EVFN--GI--NATIVACGAKGSGKTRVI--------------QGS---YEEPG 121 (614)
Q Consensus 64 F~FD~VF~~~asQ~eVf~~~v~plV~-~vl~--G~--N~tI~aYGqTGSGKTyTm--------------~G~---~~~~G 121 (614)
-+||.|-+-+.--+++.+.+.-|+.. ..+. |. .-.|+-||+.|+|||... -|+ ....|
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vG 224 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIG 224 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTT
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccc
Confidence 45677777666566666666666543 2333 22 346999999999999763 222 23457
Q ss_pred hhHHHHHHHHhhccccCc
Q 035971 122 LAALAVDEILSISEKMGK 139 (614)
Q Consensus 122 Lipral~~LF~~~~~~~~ 139 (614)
--.+.++.+|..+....-
T Consensus 225 ese~~vr~lF~~Ar~~aP 242 (405)
T 4b4t_J 225 EGSRMVRELFVMAREHAP 242 (405)
T ss_dssp HHHHHHHHHHHHHHHTCS
T ss_pred hHHHHHHHHHHHHHHhCC
Confidence 778889999988876543
No 151
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=60.41 E-value=4.5 Score=41.17 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=20.2
Q ss_pred CHHhhccCCCCCHHHHHHHHHHH
Q 035971 556 GKEDLKRLKGIGEKRASYILELR 578 (614)
Q Consensus 556 ~~~~L~~l~gig~~~A~~Ii~~R 578 (614)
..++|++|||||++.|+.|+-+=
T Consensus 209 ~~~~L~~lpGIG~~TA~~ill~~ 231 (290)
T 3i0w_A 209 CHEELKKFMGVGPQVADCIMLFS 231 (290)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCcCHHHHHHHHHHh
Confidence 46789999999999999999764
No 152
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=60.34 E-value=4.5 Score=39.77 Aligned_cols=21 Identities=38% Similarity=0.468 Sum_probs=18.3
Q ss_pred HhhccCCCCCHHHHHHHHHHH
Q 035971 558 EDLKRLKGIGEKRASYILELR 578 (614)
Q Consensus 558 ~~L~~l~gig~~~A~~Ii~~R 578 (614)
++|..|||||+|.|+++.=|=
T Consensus 12 ~~l~~LPGIG~KSA~RlA~hL 32 (228)
T 1vdd_A 12 RELSRLPGIGPKSAQRLAFHL 32 (228)
T ss_dssp HHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHhHCCCCCHHHHHHHHHHH
Confidence 578899999999999997664
No 153
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=60.31 E-value=4.2 Score=41.02 Aligned_cols=30 Identities=20% Similarity=0.181 Sum_probs=23.0
Q ss_pred hHHHHHHHhcCC---ceEEEeeccCCCCcceEe
Q 035971 84 VKPLISEVFNGI---NATIVACGAKGSGKTRVI 113 (614)
Q Consensus 84 v~plV~~vl~G~---N~tI~aYGqTGSGKTyTm 113 (614)
+...+..+++|. --||+-||+.|+|||+..
T Consensus 89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 334577788876 348999999999999654
No 154
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=60.28 E-value=3.1 Score=40.17 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=17.8
Q ss_pred HHHHHhcCCceEEEeeccCCCCcceE
Q 035971 87 LISEVFNGINATIVACGAKGSGKTRV 112 (614)
Q Consensus 87 lV~~vl~G~N~tI~aYGqTGSGKTyT 112 (614)
.+..+++|.+ ++..++||||||.+
T Consensus 59 ~i~~~~~g~~--~l~~apTGsGKT~~ 82 (242)
T 3fe2_A 59 GWPVALSGLD--MVGVAQTGSGKTLS 82 (242)
T ss_dssp HHHHHHHTCC--EEEEECTTSCHHHH
T ss_pred HHHHHhCCCC--EEEECCCcCHHHHH
Confidence 3445668876 45667999999976
No 155
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=60.21 E-value=2.3 Score=43.34 Aligned_cols=50 Identities=18% Similarity=0.284 Sum_probs=29.8
Q ss_pred eEeeeeecCCCChHHHHhhhhHHHHH-HHhcCC---ceEEEeeccCCCCcceEe
Q 035971 64 YKLDYCYEQNEGNGIIFAREVKPLIS-EVFNGI---NATIVACGAKGSGKTRVI 113 (614)
Q Consensus 64 F~FD~VF~~~asQ~eVf~~~v~plV~-~vl~G~---N~tI~aYGqTGSGKTyTm 113 (614)
..||.+.+.+.--+.+.+....|+.. ..+.+. ...|+-||++|+|||+..
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 55788877655444444444333321 122222 346999999999999754
No 156
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=60.06 E-value=3 Score=40.28 Aligned_cols=26 Identities=23% Similarity=0.483 Sum_probs=18.8
Q ss_pred HHHHHHhcCCceEEEeeccCCCCcceEe
Q 035971 86 PLISEVFNGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 86 plV~~vl~G~N~tI~aYGqTGSGKTyTm 113 (614)
.++..+..|. .++..|+||||||..+
T Consensus 68 ~~i~~i~~g~--~~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 68 EILEAISQNS--VVIIRGATGCGKTTQV 93 (235)
T ss_dssp HHHHHHHHCS--EEEEECCTTSSHHHHH
T ss_pred HHHHHHhcCC--EEEEEeCCCCCcHHhH
Confidence 4455566675 4678899999999654
No 157
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=59.98 E-value=1.8 Score=40.33 Aligned_cols=23 Identities=48% Similarity=0.771 Sum_probs=17.2
Q ss_pred HHHhcCCceEEEeeccCCCCcceEe
Q 035971 89 SEVFNGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 89 ~~vl~G~N~tI~aYGqTGSGKTyTm 113 (614)
+.+++|.+ ++..++||+|||.+.
T Consensus 43 ~~~~~~~~--~li~~~tGsGKT~~~ 65 (216)
T 3b6e_A 43 QPALEGKN--IIICLPTGSGKTRVA 65 (216)
T ss_dssp HHHHTTCC--EEEECSCHHHHHHHH
T ss_pred HHHhcCCC--EEEEcCCCCCHHHHH
Confidence 34556765 567899999999764
No 158
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=59.42 E-value=4.6 Score=35.90 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=14.7
Q ss_pred ceEEEeeccCCCCcceEe
Q 035971 96 NATIVACGAKGSGKTRVI 113 (614)
Q Consensus 96 N~tI~aYGqTGSGKTyTm 113 (614)
+..|+-||++|+|||+..
T Consensus 27 ~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp SSCEEEEEETTCCHHHHH
T ss_pred CCcEEEECCCCccHHHHH
Confidence 445788999999999764
No 159
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=58.90 E-value=3.5 Score=38.37 Aligned_cols=17 Identities=29% Similarity=0.561 Sum_probs=14.6
Q ss_pred eEEEeeccCCCCcceEe
Q 035971 97 ATIVACGAKGSGKTRVI 113 (614)
Q Consensus 97 ~tI~aYGqTGSGKTyTm 113 (614)
..++-||++|+|||+.+
T Consensus 46 ~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp SEEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 47899999999999754
No 160
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=58.84 E-value=1.9 Score=43.21 Aligned_cols=50 Identities=16% Similarity=0.219 Sum_probs=27.0
Q ss_pred eEeeeeecCCCChHHHHhhhhHHHHH-HHhcCCc----eEEEeeccCCCCcceEe
Q 035971 64 YKLDYCYEQNEGNGIIFAREVKPLIS-EVFNGIN----ATIVACGAKGSGKTRVI 113 (614)
Q Consensus 64 F~FD~VF~~~asQ~eVf~~~v~plV~-~vl~G~N----~tI~aYGqTGSGKTyTm 113 (614)
..||.|-+.+.-.+++.+.++.|+-. .++++++ ..++-||+.|+|||+.+
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 55777766655555555555544432 2333222 22899999999999654
No 161
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=58.71 E-value=2.6 Score=42.68 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=19.1
Q ss_pred HHHHHHhcCCceEEEeeccCCCCcceEe
Q 035971 86 PLISEVFNGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 86 plV~~vl~G~N~tI~aYGqTGSGKTyTm 113 (614)
.+...+..|....++-||++|+|||+++
T Consensus 48 ~l~~~l~~~~~~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 48 VLKKTLKSANLPHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp HHHHHTTCTTCCCEEEECSTTSSHHHHH
T ss_pred HHHHHHhcCCCCEEEEECCCCCCHHHHH
Confidence 3344444553334899999999999765
No 162
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=58.70 E-value=3.3 Score=41.24 Aligned_cols=20 Identities=35% Similarity=0.504 Sum_probs=16.4
Q ss_pred CCceEEEeeccCCCCcceEe
Q 035971 94 GINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 94 G~N~tI~aYGqTGSGKTyTm 113 (614)
.....+.-.|++|||||+++
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHH
T ss_pred CCCCEEEEECCCCccHHHHH
Confidence 34567888999999999876
No 163
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=58.68 E-value=4.8 Score=38.96 Aligned_cols=24 Identities=38% Similarity=0.668 Sum_probs=18.1
Q ss_pred HHHHHhcCCceEEEeeccCCCCcceE
Q 035971 87 LISEVFNGINATIVACGAKGSGKTRV 112 (614)
Q Consensus 87 lV~~vl~G~N~tI~aYGqTGSGKTyT 112 (614)
.+..+++|.+ ++..++||||||.+
T Consensus 53 ~i~~i~~~~~--~l~~a~TGsGKT~~ 76 (253)
T 1wrb_A 53 AIPAILEHRD--IMACAQTGSGKTAA 76 (253)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHhCCCC--EEEECCCCChHHHH
Confidence 3455677877 56778999999965
No 164
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=58.64 E-value=6.7 Score=37.79 Aligned_cols=19 Identities=26% Similarity=0.406 Sum_probs=15.7
Q ss_pred CceEEEeeccCCCCcceEe
Q 035971 95 INATIVACGAKGSGKTRVI 113 (614)
Q Consensus 95 ~N~tI~aYGqTGSGKTyTm 113 (614)
....|+-||++|+|||+..
T Consensus 38 ~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCCEEEEESCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 4456999999999999754
No 165
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=58.44 E-value=7.1 Score=39.26 Aligned_cols=30 Identities=27% Similarity=0.471 Sum_probs=21.6
Q ss_pred hhHHHHHHHhcCC-----ceEEEeeccCCCCcceE
Q 035971 83 EVKPLISEVFNGI-----NATIVACGAKGSGKTRV 112 (614)
Q Consensus 83 ~v~plV~~vl~G~-----N~tI~aYGqTGSGKTyT 112 (614)
.+..++..++.|+ ...|+..|++|||||+.
T Consensus 15 ~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTl 49 (287)
T 1gvn_B 15 RLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSL 49 (287)
T ss_dssp HHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHH
T ss_pred HHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHH
Confidence 5556666666543 35688999999999954
No 166
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=58.28 E-value=4.9 Score=40.96 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=19.5
Q ss_pred CHHhhccCCCCCHHHHHHHHHH
Q 035971 556 GKEDLKRLKGIGEKRASYILEL 577 (614)
Q Consensus 556 ~~~~L~~l~gig~~~A~~Ii~~ 577 (614)
..++|++|||||++.|+.|+-+
T Consensus 208 ~~~~L~~lpGIG~~TA~~ill~ 229 (295)
T 2jhn_A 208 AYEYLTSFKGIGRWTAELVLSI 229 (295)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHhcCCCcCHHHHHHHHHH
Confidence 3578999999999999999876
No 167
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=58.10 E-value=5 Score=34.03 Aligned_cols=33 Identities=27% Similarity=0.452 Sum_probs=27.2
Q ss_pred HHhhccCCCCCHHHHHHHHHHHHhCCCCCCCHHhhhhcC
Q 035971 557 KEDLKRLKGIGEKRASYILELREESPEPFKNLDDLKDIG 595 (614)
Q Consensus 557 ~~~L~~l~gig~~~A~~Ii~~R~~~gg~f~~~~dL~~~g 595 (614)
-.+|..||.||+++++...+ . | +.+++||...|
T Consensus 3 m~~L~dLPNig~~~e~~L~~----~-G-I~t~~~Lr~~G 35 (93)
T 3mab_A 3 LANLSELPNIGKVLEQDLIK----A-G-IKTPVELKDVG 35 (93)
T ss_dssp CCCGGGSTTCCHHHHHHHHH----T-T-CCSHHHHHHHC
T ss_pred HHHHhhCCCCCHHHHHHHHH----c-C-CCCHHHHHhCC
Confidence 35799999999999987642 4 5 99999998876
No 168
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=58.00 E-value=2.7 Score=43.73 Aligned_cols=51 Identities=18% Similarity=0.266 Sum_probs=30.3
Q ss_pred eeEeeeeecCCCChHHHHhhhhHHHHH-HHhcCC---ceEEEeeccCCCCcceEe
Q 035971 63 CYKLDYCYEQNEGNGIIFAREVKPLIS-EVFNGI---NATIVACGAKGSGKTRVI 113 (614)
Q Consensus 63 ~F~FD~VF~~~asQ~eVf~~~v~plV~-~vl~G~---N~tI~aYGqTGSGKTyTm 113 (614)
...||.|.+.+..-+.+.+.+..|+-. .++.+. ...|+-||++|+|||+..
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 456788877665545555444333221 223322 235888999999999654
No 169
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=56.97 E-value=2.2 Score=42.02 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=0.0
Q ss_pred hhccCCHHhhccCCCCCHHHHHHHHHH
Q 035971 551 LLNTGGKEDLKRLKGIGEKRASYILEL 577 (614)
Q Consensus 551 ~lN~A~~~~L~~l~gig~~~A~~Ii~~ 577 (614)
.|=.|+.+||..+ |||+++|+.|.+|
T Consensus 198 ~i~~As~eeL~~V-GIG~~~A~~I~~~ 223 (226)
T 3c65_A 198 KMKEATVEELQRA-NIPRAVAEKIYEK 223 (226)
T ss_dssp ---------------------------
T ss_pred HHHhCCHHHHHHc-CCCHHHHHHHHHH
Confidence 3567899999999 9999999999875
No 170
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=56.67 E-value=3.5 Score=42.29 Aligned_cols=29 Identities=24% Similarity=0.242 Sum_probs=20.3
Q ss_pred HHHHHHHhcC-CceEEEeeccCCCCcceEe
Q 035971 85 KPLISEVFNG-INATIVACGAKGSGKTRVI 113 (614)
Q Consensus 85 ~plV~~vl~G-~N~tI~aYGqTGSGKTyTm 113 (614)
...+..++.| ....++-||++|+|||+++
T Consensus 33 ~~~l~~~~~~~~~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 33 AIAIRYFVKNEVKFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp HHHHHHHHTTCCCCEEEEEECTTSSHHHHH
T ss_pred HHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 3344554444 3458999999999999654
No 171
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=56.24 E-value=7.9 Score=30.95 Aligned_cols=31 Identities=19% Similarity=0.406 Sum_probs=25.4
Q ss_pred hhhccCCHHhhccCCCCCHHHHHHHHHHHHh
Q 035971 550 KLLNTGGKEDLKRLKGIGEKRASYILELREE 580 (614)
Q Consensus 550 ~~lN~A~~~~L~~l~gig~~~A~~Ii~~R~~ 580 (614)
..|=.++.++|..|+||++.+|++||..=.+
T Consensus 32 edlA~~~~~eL~~i~gise~kA~~ii~aAr~ 62 (70)
T 1wcn_A 32 EDLAEQGIDDLADIEGLTDEKAGALIMAARN 62 (70)
T ss_dssp HHHHTSCHHHHHTSSSCCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHccCCCHHHHHHHHHHHHH
Confidence 3466789999999999999999999865433
No 172
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=56.22 E-value=3.7 Score=41.99 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=17.1
Q ss_pred HHhcCCceEEEeeccCCCCcceEe
Q 035971 90 EVFNGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 90 ~vl~G~N~tI~aYGqTGSGKTyTm 113 (614)
.+-.|.-..++-||+.|+|||+++
T Consensus 40 ~i~~g~~~~~ll~Gp~G~GKTtla 63 (340)
T 1sxj_C 40 FVDEGKLPHLLFYGPPGTGKTSTI 63 (340)
T ss_dssp HHHTTCCCCEEEECSSSSSHHHHH
T ss_pred HHhcCCCceEEEECCCCCCHHHHH
Confidence 333454333788999999999776
No 173
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=56.13 E-value=4.5 Score=39.57 Aligned_cols=23 Identities=43% Similarity=0.394 Sum_probs=20.3
Q ss_pred CCHHhhc-cCCCCCHHHHHHHHHH
Q 035971 555 GGKEDLK-RLKGIGEKRASYILEL 577 (614)
Q Consensus 555 A~~~~L~-~l~gig~~~A~~Ii~~ 577 (614)
...++|+ +|||||++.|+.|+-+
T Consensus 126 ~~r~~L~~~l~GVG~kTA~~vL~~ 149 (219)
T 3n0u_A 126 QSREFLVRNAKGIGWKEASHFLRN 149 (219)
T ss_dssp HHHHHHHHHSTTCCHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHH
Confidence 3567899 9999999999999976
No 174
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=55.83 E-value=2.4 Score=42.20 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=0.0
Q ss_pred HhhhccCCHHhhccCCCCCHHHHHHHHHH
Q 035971 549 LKLLNTGGKEDLKRLKGIGEKRASYILEL 577 (614)
Q Consensus 549 ~~~lN~A~~~~L~~l~gig~~~A~~Ii~~ 577 (614)
+..|-.|+.++|..+||||+++|++|+++
T Consensus 39 ve~L~~a~~~eL~~v~GIG~ktAe~I~~~ 67 (241)
T 1vq8_Y 39 VEDVRGADQSALADVSGIGNALAARIKAD 67 (241)
T ss_dssp -----------------------------
T ss_pred HHHHHhCCHHHHHhccCCCHHHHHHHHHH
Confidence 34466899999999999999999999664
No 175
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=55.72 E-value=4.9 Score=40.61 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=20.0
Q ss_pred HHHHHhcCCceEEEeeccCCCCcceE
Q 035971 87 LISEVFNGINATIVACGAKGSGKTRV 112 (614)
Q Consensus 87 lV~~vl~G~N~tI~aYGqTGSGKTyT 112 (614)
.+..++.|...-++++++||||||.+
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~a 147 (300)
T 3fmo_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAA 147 (300)
T ss_dssp HHHHHTSSSCCCEEEECCTTSSHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCCccHH
Confidence 45667777444578899999999976
No 176
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=55.63 E-value=3.3 Score=36.93 Aligned_cols=19 Identities=21% Similarity=0.372 Sum_probs=15.3
Q ss_pred CCceEEEeeccCCCCcceE
Q 035971 94 GINATIVACGAKGSGKTRV 112 (614)
Q Consensus 94 G~N~tI~aYGqTGSGKTyT 112 (614)
..+..|+-||++|+|||+.
T Consensus 22 ~~~~~vll~G~~GtGKt~l 40 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTG 40 (145)
T ss_dssp TCCSCEEEESSTTSSHHHH
T ss_pred CCCCCEEEECCCCCCHHHH
Confidence 4455689999999999954
No 177
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=55.55 E-value=5.9 Score=37.84 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=18.1
Q ss_pred HHHHHhcCCceEEEeeccCCCCcceE
Q 035971 87 LISEVFNGINATIVACGAKGSGKTRV 112 (614)
Q Consensus 87 lV~~vl~G~N~tI~aYGqTGSGKTyT 112 (614)
.+..+++|.| ++..++||||||.+
T Consensus 54 ~i~~~~~~~~--~l~~a~TGsGKT~~ 77 (230)
T 2oxc_A 54 AIPLGRCGLD--LIVQAKSGTGKTCV 77 (230)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHH
Confidence 3445677877 56678999999976
No 178
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=55.52 E-value=5.9 Score=38.62 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=18.2
Q ss_pred HHHHHhcCCceEEEeeccCCCCcceE
Q 035971 87 LISEVFNGINATIVACGAKGSGKTRV 112 (614)
Q Consensus 87 lV~~vl~G~N~tI~aYGqTGSGKTyT 112 (614)
.+..+++|.+ ++..++||||||.+
T Consensus 73 ~i~~i~~~~~--~lv~a~TGsGKT~~ 96 (249)
T 3ber_A 73 AIPLALQGRD--IIGLAETGSGKTGA 96 (249)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHHhCCCC--EEEEcCCCCCchhH
Confidence 4556678876 56678999999976
No 179
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=55.51 E-value=3.9 Score=44.68 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=16.0
Q ss_pred CCceEEEeeccCCCCcceEe
Q 035971 94 GINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 94 G~N~tI~aYGqTGSGKTyTm 113 (614)
.....|+-||++|+|||+..
T Consensus 236 ~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHH
Confidence 34567999999999999643
No 180
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=55.36 E-value=3.6 Score=40.19 Aligned_cols=26 Identities=23% Similarity=0.525 Sum_probs=19.1
Q ss_pred HHHHhcCC--ceEEEeeccCCCCcceEe
Q 035971 88 ISEVFNGI--NATIVACGAKGSGKTRVI 113 (614)
Q Consensus 88 V~~vl~G~--N~tI~aYGqTGSGKTyTm 113 (614)
+..++.|. .-+++-||+.|+|||+..
T Consensus 48 l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 48 LKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 44455553 246999999999999765
No 181
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=55.36 E-value=5.8 Score=40.82 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=20.3
Q ss_pred HHHHHHhcCCceEEEeeccCCCCcceE
Q 035971 86 PLISEVFNGINATIVACGAKGSGKTRV 112 (614)
Q Consensus 86 plV~~vl~G~N~tI~aYGqTGSGKTyT 112 (614)
..+..++.|.+ ++..++||||||.+
T Consensus 69 ~~i~~~~~~~~--~lv~a~TGsGKT~~ 93 (414)
T 3eiq_A 69 RAILPCIKGYD--VIAQAQSGTGKTAT 93 (414)
T ss_dssp HHHHHHHTTCC--EEECCCSCSSSHHH
T ss_pred HHhHHHhCCCC--EEEECCCCCcccHH
Confidence 45567778888 67899999999976
No 182
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=55.23 E-value=6.1 Score=41.54 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=20.3
Q ss_pred CHHhhccCCCCCHHHHHHHHHHH
Q 035971 556 GKEDLKRLKGIGEKRASYILELR 578 (614)
Q Consensus 556 ~~~~L~~l~gig~~~A~~Ii~~R 578 (614)
..++|++|||||++.|+.|+-+=
T Consensus 251 ~~~~L~~LpGIGp~TA~~ill~a 273 (360)
T 2xhi_A 251 AHKALCILPGVGTCVADKICLMA 273 (360)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHh
Confidence 45789999999999999999864
No 183
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=54.46 E-value=5.8 Score=42.31 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=21.2
Q ss_pred HHHHHhcCCceEEEeeccCCCCcceE
Q 035971 87 LISEVFNGINATIVACGAKGSGKTRV 112 (614)
Q Consensus 87 lV~~vl~G~N~tI~aYGqTGSGKTyT 112 (614)
.+..++.|.+..++..|+||||||..
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~~ 147 (479)
T 3fmp_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAA 147 (479)
T ss_dssp HHHHHTSBSCCEEEEECCSSSSHHHH
T ss_pred HHHHHHcCCCCcEEEEcCCCCchhHH
Confidence 45566777667889999999999976
No 184
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=54.24 E-value=5.2 Score=39.79 Aligned_cols=21 Identities=29% Similarity=0.465 Sum_probs=16.4
Q ss_pred cCCceEEEeeccCCCCcceEe
Q 035971 93 NGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 93 ~G~N~tI~aYGqTGSGKTyTm 113 (614)
.|....++-||++|+|||++.
T Consensus 43 ~~~~~~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 43 TGSMPHLLFAGPPGVGKTTAA 63 (327)
T ss_dssp HTCCCEEEEESCTTSSHHHHH
T ss_pred cCCCCeEEEECcCCCCHHHHH
Confidence 454445899999999999764
No 185
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=53.85 E-value=8.9 Score=30.72 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=23.1
Q ss_pred hccCCHHhhccCCCCCHHHHHHHHHH
Q 035971 552 LNTGGKEDLKRLKGIGEKRASYILEL 577 (614)
Q Consensus 552 lN~A~~~~L~~l~gig~~~A~~Ii~~ 577 (614)
|--++.++|..|+||.+.+|+.|.+.
T Consensus 33 vA~~~~~eL~~I~G~dE~~a~~l~~~ 58 (70)
T 1u9l_A 33 LAYVPMKELLEIEGLDEPTVEALRER 58 (70)
T ss_dssp HHHSCHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHcCCHHHHhhccCCCHHHHHHHHHH
Confidence 55789999999999999999999864
No 186
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=53.48 E-value=3.1 Score=44.72 Aligned_cols=51 Identities=18% Similarity=0.218 Sum_probs=27.9
Q ss_pred eeEeeeeecCCCChHHHHhhhhHHHHH-HHhcC---CceEEEeeccCCCCcceEe
Q 035971 63 CYKLDYCYEQNEGNGIIFAREVKPLIS-EVFNG---INATIVACGAKGSGKTRVI 113 (614)
Q Consensus 63 ~F~FD~VF~~~asQ~eVf~~~v~plV~-~vl~G---~N~tI~aYGqTGSGKTyTm 113 (614)
...||.|.+.+.--+.+.+.+..|+-. .++.| ....|+-||++|+|||+..
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 456777766443333333322222211 22333 2356899999999999654
No 187
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=53.26 E-value=26 Score=29.37 Aligned_cols=54 Identities=17% Similarity=0.231 Sum_probs=37.4
Q ss_pred Hhhhcc-CCHHhhccCCCCCHHHHHHHHHHHHhCCCCCCCHHhhhh----cCCCHHHHHHHHHHH
Q 035971 549 LKLLNT-GGKEDLKRLKGIGEKRASYILELREESPEPFKNLDDLKD----IGLSAKQIKGMMKKE 608 (614)
Q Consensus 549 ~~~lN~-A~~~~L~~l~gig~~~A~~Ii~~R~~~gg~f~~~~dL~~----~gl~~~~~~~~~~~~ 608 (614)
-+||.. ....++..|||||+.++++..+ . | |..--+|.- .+-..+....||+..
T Consensus 8 ~~Fv~EPmgeK~V~evpGIG~~~~~~L~~----~-G-f~kAy~lLGqFL~l~kd~~~F~~WLk~~ 66 (89)
T 1ci4_A 8 RDFVAEPMGEKPVGSLAGIGEVLGKKLEE----R-G-FDKAYVVLGQFLVLKKDEDLFREWLKDT 66 (89)
T ss_dssp HHHHTSCCTTCCGGGSTTCCHHHHHHHHH----T-T-CCSHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHhCCCCCCCcccCCCcCHHHHHHHHH----c-C-ccHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 344443 2346788999999999999887 2 4 877776654 444667777777654
No 188
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=53.21 E-value=12 Score=41.05 Aligned_cols=19 Identities=26% Similarity=0.504 Sum_probs=15.7
Q ss_pred cCCceEEEeeccCCCCcceEe
Q 035971 93 NGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 93 ~G~N~tI~aYGqTGSGKTyTm 113 (614)
.|.+ +...|+||||||++|
T Consensus 259 ~g~~--i~I~GptGSGKTTlL 277 (511)
T 2oap_1 259 HKFS--AIVVGETASGKTTTL 277 (511)
T ss_dssp TTCC--EEEEESTTSSHHHHH
T ss_pred CCCE--EEEECCCCCCHHHHH
Confidence 5665 677899999999886
No 189
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=53.07 E-value=2.6 Score=42.94 Aligned_cols=20 Identities=35% Similarity=0.517 Sum_probs=16.1
Q ss_pred CCceEEEeeccCCCCcceEe
Q 035971 94 GINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 94 G~N~tI~aYGqTGSGKTyTm 113 (614)
+....++-||++|+|||+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 34557899999999999654
No 190
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=52.90 E-value=4.5 Score=40.25 Aligned_cols=17 Identities=29% Similarity=0.536 Sum_probs=14.8
Q ss_pred eEEEeeccCCCCcceEe
Q 035971 97 ATIVACGAKGSGKTRVI 113 (614)
Q Consensus 97 ~tI~aYGqTGSGKTyTm 113 (614)
..++-+|++|+|||++.
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 67999999999999654
No 191
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=52.89 E-value=7.4 Score=39.32 Aligned_cols=44 Identities=25% Similarity=0.255 Sum_probs=26.8
Q ss_pred EeeeeecCCCChHHHHhhhhHHHHHHHh--cCCceEEEeeccCCCCcceEe
Q 035971 65 KLDYCYEQNEGNGIIFAREVKPLISEVF--NGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 65 ~FD~VF~~~asQ~eVf~~~v~plV~~vl--~G~N~tI~aYGqTGSGKTyTm 113 (614)
.||.+.+. +.+.+ .+..++..+. .+....|+-||++|+|||+..
T Consensus 27 ~~~~iiG~----~~~~~-~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 27 NFDGYIGQ----ESIKK-NLNVFIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp SGGGCCSC----HHHHH-HHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhCCh----HHHHH-HHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 35655553 44443 2444454443 234456899999999999654
No 192
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=52.57 E-value=4.8 Score=39.77 Aligned_cols=18 Identities=33% Similarity=0.571 Sum_probs=15.0
Q ss_pred ceEEEeeccCCCCcceEe
Q 035971 96 NATIVACGAKGSGKTRVI 113 (614)
Q Consensus 96 N~tI~aYGqTGSGKTyTm 113 (614)
...++-||++|+|||++.
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456889999999999754
No 193
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=52.19 E-value=9.8 Score=41.41 Aligned_cols=75 Identities=24% Similarity=0.230 Sum_probs=46.5
Q ss_pred eEeeeeecCCCChHHHHhhhhHHHHH-HHhc--C--CceEEEeeccCCCCcceEe--------------ecC---CCCcc
Q 035971 64 YKLDYCYEQNEGNGIIFAREVKPLIS-EVFN--G--INATIVACGAKGSGKTRVI--------------QGS---YEEPG 121 (614)
Q Consensus 64 F~FD~VF~~~asQ~eVf~~~v~plV~-~vl~--G--~N~tI~aYGqTGSGKTyTm--------------~G~---~~~~G 121 (614)
-+||-|-+-+.--+++.+.+.-|+.. ..+. | .--.|+.||+.|+|||++. -|+ ....|
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vG 285 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVG 285 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSS
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCC
Confidence 45666666555445555544444432 2333 3 2356999999999999653 221 23457
Q ss_pred hhHHHHHHHHhhccccC
Q 035971 122 LAALAVDEILSISEKMG 138 (614)
Q Consensus 122 Lipral~~LF~~~~~~~ 138 (614)
--.+.++.+|.......
T Consensus 286 esek~ir~lF~~Ar~~a 302 (467)
T 4b4t_H 286 EGARMVRELFEMARTKK 302 (467)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 77788888888776543
No 194
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=51.99 E-value=4.4 Score=38.30 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=17.5
Q ss_pred HHHHhcCCceEEEeeccCCCCcceE
Q 035971 88 ISEVFNGINATIVACGAKGSGKTRV 112 (614)
Q Consensus 88 V~~vl~G~N~tI~aYGqTGSGKTyT 112 (614)
+..+++|.+ ++..++||||||.+
T Consensus 35 i~~~~~~~~--~lv~a~TGsGKT~~ 57 (219)
T 1q0u_A 35 IPGALRGES--MVGQSQTGTGKTHA 57 (219)
T ss_dssp HHHHHHTCC--EEEECCSSHHHHHH
T ss_pred HHHHhCCCC--EEEECCCCChHHHH
Confidence 445667876 46778999999976
No 195
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=51.85 E-value=6.6 Score=40.01 Aligned_cols=44 Identities=25% Similarity=0.348 Sum_probs=36.7
Q ss_pred HHhhhccCCHHhhccC-CCC-----CHHHHHHHHHHHHhCCCCCCCHHhhhh
Q 035971 548 YLKLLNTGGKEDLKRL-KGI-----GEKRASYILELREESPEPFKNLDDLKD 593 (614)
Q Consensus 548 ~~~~lN~A~~~~L~~l-~gi-----g~~~A~~Ii~~R~~~gg~f~~~~dL~~ 593 (614)
.-++||+++.++|..| .-- -..+|++|+++|+.. ||.+-.||.+
T Consensus 130 A~~~vn~~~~~~L~~i~~~yGee~~a~~iA~~Iv~~R~~~--pi~tt~~L~~ 179 (285)
T 1wg8_A 130 AKEVVNRLPLEALARLLRELGEEPQAYRIARAIVAAREKA--PIETTTQLAE 179 (285)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHS--CCCBHHHHHH
T ss_pred HHHHHhhCCHHHHHHHHHHhcCHhHHHHHHHHHHHHhccC--CCCCHHHHHH
Confidence 4567999999999875 222 478999999999987 9999999987
No 196
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=51.47 E-value=4.4 Score=42.36 Aligned_cols=44 Identities=23% Similarity=0.376 Sum_probs=36.8
Q ss_pred HHhhhccCCHHhhccC---CC---CCHHHHHHHHHHHHhCCCCCCCHHhhhh
Q 035971 548 YLKLLNTGGKEDLKRL---KG---IGEKRASYILELREESPEPFKNLDDLKD 593 (614)
Q Consensus 548 ~~~~lN~A~~~~L~~l---~g---ig~~~A~~Ii~~R~~~gg~f~~~~dL~~ 593 (614)
.-++||+++.++|..| +| --.++|++|++.|++. ||.+-.||.+
T Consensus 170 Aadvvn~~~e~eLa~Il~~YGEEr~a~rIA~aIv~~R~~~--pi~tT~~La~ 219 (347)
T 3tka_A 170 AAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQ--PMTRTKELAE 219 (347)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHS--CCCBHHHHHH
T ss_pred HHHHHhhCCHHHHHHHHHHhcCcchHHHHHHHHHHHHhcC--CCCcHHHHHH
Confidence 3567999999999875 22 5679999999999987 9999999876
No 197
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=51.03 E-value=7.4 Score=41.90 Aligned_cols=38 Identities=29% Similarity=0.456 Sum_probs=25.2
Q ss_pred ChHHHHhhhhHHHHHHHhcCCceEEEeeccCCCCcceEe
Q 035971 75 GNGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 75 sQ~eVf~~~v~plV~~vl~G~N~tI~aYGqTGSGKTyTm 113 (614)
.|+.+.. ....+...+-.|.-..++-||++|+|||+..
T Consensus 30 Gq~~~~~-~~~~L~~~i~~~~~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 30 GQQHLLA-AGKPLPRAIEAGHLHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp SCHHHHS-TTSHHHHHHHHTCCCEEEEECSTTSSHHHHH
T ss_pred CcHHHHh-chHHHHHHHHcCCCcEEEEECCCCCcHHHHH
Confidence 3455553 2344444445566678999999999999654
No 198
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=50.49 E-value=10 Score=34.36 Aligned_cols=43 Identities=21% Similarity=0.248 Sum_probs=31.9
Q ss_pred cchhhhHHHHHhhhccCCHHhhccCCCCCHHHHHHHHHHHHhC
Q 035971 539 GMKNSLVQEYLKLLNTGGKEDLKRLKGIGEKRASYILELREES 581 (614)
Q Consensus 539 ~~~~~l~~~~~~~lN~A~~~~L~~l~gig~~~A~~Ii~~R~~~ 581 (614)
++=....+..+..=.=.+.|||..++|||++..+.|=+||...
T Consensus 70 GiGp~~A~~II~~GpF~svedL~~V~GIg~k~~e~l~~~~~~~ 112 (134)
T 1s5l_U 70 GLYPTLAKLIVKNAPYESVEDVLNIPGLTERQKQILRENLEHF 112 (134)
T ss_dssp TCTHHHHHHHHHTCCCSSGGGGGGCTTCCHHHHHHHHHHHTTE
T ss_pred CCCHHHHHHHHHcCCCCCHHHHHhCCCCCHHHHHHHHHhhcce
Confidence 3444455555543335688999999999999999999999765
No 199
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=49.90 E-value=7.8 Score=40.02 Aligned_cols=25 Identities=28% Similarity=0.577 Sum_probs=19.4
Q ss_pred HHHHHhcCCceEEEeeccCCCCcceEe
Q 035971 87 LISEVFNGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 87 lV~~vl~G~N~tI~aYGqTGSGKTyTm 113 (614)
.+..+++|.+ ++..++||||||.+.
T Consensus 67 ai~~i~~~~~--~lv~a~TGsGKT~~~ 91 (410)
T 2j0s_A 67 AIKQIIKGRD--VIAQSQSGTGKTATF 91 (410)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCCchHHH
Confidence 4556778877 677899999999653
No 200
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=49.86 E-value=7.1 Score=40.05 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=20.3
Q ss_pred HHHHHhcCCceEEEeeccCCCCcceE
Q 035971 87 LISEVFNGINATIVACGAKGSGKTRV 112 (614)
Q Consensus 87 lV~~vl~G~N~tI~aYGqTGSGKTyT 112 (614)
.+..++.|.+..++..++||||||.+
T Consensus 55 ~i~~~~~~~~~~~lv~apTGsGKT~~ 80 (412)
T 3fht_A 55 ALPLMLAEPPQNLIAQSQSGTGKTAA 80 (412)
T ss_dssp HHHHHHSSSCCCEEEECCTTSCHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCchHHHH
Confidence 45666777555678889999999976
No 201
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=49.77 E-value=6.7 Score=38.14 Aligned_cols=23 Identities=26% Similarity=0.163 Sum_probs=17.1
Q ss_pred HHHhcCCceEEEeeccCCCCcceEe
Q 035971 89 SEVFNGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 89 ~~vl~G~N~tI~aYGqTGSGKTyTm 113 (614)
..++++.+ ++.+|+||+|||+..
T Consensus 103 ~~~~~~~~--~ll~~~tG~GKT~~a 125 (237)
T 2fz4_A 103 ERWLVDKR--GCIVLPTGSGKTHVA 125 (237)
T ss_dssp HHHTTTSE--EEEEESSSTTHHHHH
T ss_pred HHHHhCCC--EEEEeCCCCCHHHHH
Confidence 34556655 677789999999874
No 202
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=49.28 E-value=4.3 Score=42.59 Aligned_cols=28 Identities=29% Similarity=0.408 Sum_probs=20.2
Q ss_pred HHHHHHhcCCceEEEeeccCCCCcceEe
Q 035971 86 PLISEVFNGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 86 plV~~vl~G~N~tI~aYGqTGSGKTyTm 113 (614)
+++..+.-.....+...|++|||||++|
T Consensus 126 ~~l~~l~~~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 126 DKVLELCHRKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSHHHHTTSSSEEEEEECSSSSSHHHHH
T ss_pred HHHHHHhhcCCCEEEEECCCCCCHHHHH
Confidence 3444444344567889999999999887
No 203
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=49.02 E-value=5.8 Score=44.58 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=18.5
Q ss_pred HHHHHhcCCceEEEeeccCCCCcceEee
Q 035971 87 LISEVFNGINATIVACGAKGSGKTRVIQ 114 (614)
Q Consensus 87 lV~~vl~G~N~tI~aYGqTGSGKTyTm~ 114 (614)
.|..++..... .+-.|+.|||||+|+.
T Consensus 197 AV~~al~~~~~-~lI~GPPGTGKT~ti~ 223 (646)
T 4b3f_X 197 AVLFALSQKEL-AIIHGPPGTGKTTTVV 223 (646)
T ss_dssp HHHHHHHCSSE-EEEECCTTSCHHHHHH
T ss_pred HHHHHhcCCCc-eEEECCCCCCHHHHHH
Confidence 35555543333 4667999999999964
No 204
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=48.92 E-value=6.1 Score=43.57 Aligned_cols=30 Identities=27% Similarity=0.462 Sum_probs=19.8
Q ss_pred hHHHHHHHhcCCceEEEeeccCCCCcceEee
Q 035971 84 VKPLISEVFNGINATIVACGAKGSGKTRVIQ 114 (614)
Q Consensus 84 v~plV~~vl~G~N~tI~aYGqTGSGKTyTm~ 114 (614)
+..+++.+.+|...++++ ++||||||.+++
T Consensus 187 i~~~~~~~~~~~~~~ll~-~~TGsGKT~~~~ 216 (590)
T 3h1t_A 187 INRAVQSVLQGKKRSLIT-MATGTGKTVVAF 216 (590)
T ss_dssp HHHHHHHHHTTCSEEEEE-ECTTSCHHHHHH
T ss_pred HHHHHHHHhcCCCceEEE-ecCCCChHHHHH
Confidence 333444445576655554 999999998864
No 205
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=48.22 E-value=6.6 Score=40.53 Aligned_cols=25 Identities=24% Similarity=0.509 Sum_probs=19.0
Q ss_pred HHHhcC---CceEEEe--eccCCCCcceEe
Q 035971 89 SEVFNG---INATIVA--CGAKGSGKTRVI 113 (614)
Q Consensus 89 ~~vl~G---~N~tI~a--YGqTGSGKTyTm 113 (614)
..+..| ....++. ||+.|+|||+.+
T Consensus 40 ~~~~~~~~~~~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 40 NRLLSGAGLSDVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp HHHHTSSCBCCEEEEEECTTCCSSSHHHHH
T ss_pred HHHhcCCCCCCCEEEEeCcCcCCCCHHHHH
Confidence 555555 5567888 999999999654
No 206
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=48.04 E-value=8.3 Score=33.87 Aligned_cols=47 Identities=17% Similarity=0.333 Sum_probs=34.1
Q ss_pred CHHhhccCCCCCHHHHHHHHHHHHhCCCCCCCH--------Hhhhh-cCCCHHHHHHHHHHHh
Q 035971 556 GKEDLKRLKGIGEKRASYILELREESPEPFKNL--------DDLKD-IGLSAKQIKGMMKKEM 609 (614)
Q Consensus 556 ~~~~L~~l~gig~~~A~~Ii~~R~~~gg~f~~~--------~dL~~-~gl~~~~~~~~~~~~~ 609 (614)
+.++|..+ |||+..++++.+ . | |.++ .+|.+ .|||...+.+|+...-
T Consensus 24 ~I~~L~~~-GIg~~~i~kL~e----A-G-~~Tve~va~a~~~eL~~i~GIse~ka~kIi~aA~ 79 (114)
T 1b22_A 24 PISRLEQC-GINANDVKKLEE----A-G-FHTVEAVAYAPKKELINIKGISEAKADKILAEAA 79 (114)
T ss_dssp CHHHHHHT-TCSHHHHHHHHT----T-C-CSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHHH
T ss_pred cHHHHHhc-CCCHHHHHHHHH----c-C-cCcHHHHHhCCHHHHHHccCCCHHHHHHHHHHHH
Confidence 45566666 999999887654 2 4 6665 56666 8999999999987653
No 207
>3ci0_K Pseudopilin GSPK; general secretory pathway, pseudopilus, type 4 pilin biogene methylation, protein transport; 2.20A {Escherichia coli} SCOP: a.60.16.1 a.60.16.1 d.24.1.6
Probab=47.77 E-value=21 Score=36.20 Aligned_cols=43 Identities=16% Similarity=0.316 Sum_probs=33.3
Q ss_pred cCCCCC----HHHHHHHHHHHHh------------------------CCCCCCCHHhhhh-cCCCHHHHHHH
Q 035971 562 RLKGIG----EKRASYILELREE------------------------SPEPFKNLDDLKD-IGLSAKQIKGM 604 (614)
Q Consensus 562 ~l~gig----~~~A~~Ii~~R~~------------------------~gg~f~~~~dL~~-~gl~~~~~~~~ 604 (614)
..-|+. +.+|++|++|+.. .++||.+++||.. .|++++.+.++
T Consensus 103 ~~lg~~~~~a~~la~~i~dw~D~d~~~~~~~GaE~~~Y~~~~~~y~~~n~~~~~~~EL~~v~G~~~~~~~~l 174 (298)
T 3ci0_K 103 SRLDVPAYRAELIAESLWEFIDEDRSVQTRLGREDSEYLARSVPFYAANQPLADISEMRVVQGMDAGLYQKL 174 (298)
T ss_dssp HTTTCCHHHHHHHHHHHHHHHSSSSSCCSSSCCCHHHHHTSSSCBCCCCSCCSSGGGGGGSTTCCHHHHHHH
T ss_pred HHcCCChHHHHHHHHHHHHHhcCCCCccCCCCccccchhhcCCCCCCCCCCCCCHHHHHhccCCCHHHHHhh
Confidence 334666 5678888888842 2478999999999 89999998876
No 208
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=47.55 E-value=7.5 Score=40.43 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=18.3
Q ss_pred HHHHHhcCCceEEEeeccCCCCcceE
Q 035971 87 LISEVFNGINATIVACGAKGSGKTRV 112 (614)
Q Consensus 87 lV~~vl~G~N~tI~aYGqTGSGKTyT 112 (614)
.+..+++|.| ++..++||||||..
T Consensus 29 ~i~~i~~~~~--~lv~apTGsGKT~~ 52 (414)
T 3oiy_A 29 WAKRIVQGKS--FTMVAPTGVGKTTF 52 (414)
T ss_dssp HHHHHTTTCC--EECCSCSSSSHHHH
T ss_pred HHHHHhcCCC--EEEEeCCCCCHHHH
Confidence 3445677875 57889999999973
No 209
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=47.49 E-value=4.9 Score=39.86 Aligned_cols=21 Identities=24% Similarity=0.339 Sum_probs=16.1
Q ss_pred cCCceEEEeeccCCCCcceEe
Q 035971 93 NGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 93 ~G~N~tI~aYGqTGSGKTyTm 113 (614)
.|....++-||+.|+|||++.
T Consensus 35 ~~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 35 RKNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp TTCCCCEEEESSSSSSHHHHH
T ss_pred CCCCCeEEEECcCCcCHHHHH
Confidence 354444899999999999754
No 210
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=47.44 E-value=6.1 Score=37.57 Aligned_cols=30 Identities=20% Similarity=0.329 Sum_probs=21.9
Q ss_pred hHHHHHHHhcC-C--ceEEEeeccCCCCcceEe
Q 035971 84 VKPLISEVFNG-I--NATIVACGAKGSGKTRVI 113 (614)
Q Consensus 84 v~plV~~vl~G-~--N~tI~aYGqTGSGKTyTm 113 (614)
.-+-++.++.| . ...+.-+|++|+|||+.+
T Consensus 9 G~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~ 41 (243)
T 1n0w_A 9 GSKELDKLLQGGIETGSITEMFGEFRTGKTQIC 41 (243)
T ss_dssp SCHHHHHHTTTSEETTSEEEEECCTTSSHHHHH
T ss_pred CChHHHHhhcCCCcCCeEEEEECCCCCcHHHHH
Confidence 34567777754 2 346888999999999765
No 211
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=47.13 E-value=8.4 Score=39.10 Aligned_cols=27 Identities=19% Similarity=0.345 Sum_probs=19.7
Q ss_pred HHHHHhcCCceEEEeeccCCCCcceEe
Q 035971 87 LISEVFNGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 87 lV~~vl~G~N~tI~aYGqTGSGKTyTm 113 (614)
.+..++.|....++..++||||||.+.
T Consensus 35 ~i~~~~~~~~~~~lv~a~TGsGKT~~~ 61 (395)
T 3pey_A 35 ALPLLLHNPPRNMIAQSQSGTGKTAAF 61 (395)
T ss_dssp HHHHHHCSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCcHHHHH
Confidence 345667774455788899999999753
No 212
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=47.12 E-value=8.7 Score=39.42 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=18.8
Q ss_pred HHHHHhcCCceEEEeeccCCCCcceEe
Q 035971 87 LISEVFNGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 87 lV~~vl~G~N~tI~aYGqTGSGKTyTm 113 (614)
.+..+++|.+ ++..++||||||.+.
T Consensus 51 ~i~~i~~~~~--~li~a~TGsGKT~~~ 75 (400)
T 1s2m_A 51 AIPVAITGRD--ILARAKNGTGKTAAF 75 (400)
T ss_dssp HHHHHHHTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhcCCC--EEEECCCCcHHHHHH
Confidence 3455667877 677899999999653
No 213
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=46.63 E-value=24 Score=37.28 Aligned_cols=45 Identities=20% Similarity=0.258 Sum_probs=35.1
Q ss_pred hhccCCCCCHHHHHHHHHHH----HhCCCCCCCHHhhhh-cCCCHHHHHHHHH
Q 035971 559 DLKRLKGIGEKRASYILELR----EESPEPFKNLDDLKD-IGLSAKQIKGMMK 606 (614)
Q Consensus 559 ~L~~l~gig~~~A~~Ii~~R----~~~gg~f~~~~dL~~-~gl~~~~~~~~~~ 606 (614)
-|.+||+||++.|++++++= .-. =-+++||++ -|++.+.++.+-.
T Consensus 316 iLs~IPrl~~~iae~Lv~~FGsLq~Il---~AS~eEL~~VeGIGe~rAr~Ire 365 (377)
T 3c1y_A 316 LLKTVARIPLSIGYNVVRMFKTLDQIS---KASVEDLKKVEGIGEKRARAISE 365 (377)
T ss_dssp HHHHTSCCCHHHHHHHHHHHCSHHHHT---TCCHHHHTTSTTCCHHHHHHHHH
T ss_pred HHhhCCCCCHHHHHHHHHHhCCHHHHH---hCCHHHHHhccCccHHHHHHHHH
Confidence 56789999999999999863 111 147899999 8999988877643
No 214
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=46.24 E-value=9.8 Score=37.68 Aligned_cols=24 Identities=38% Similarity=0.538 Sum_probs=17.7
Q ss_pred HHHHhcCCceEEEeeccCCCCcceEe
Q 035971 88 ISEVFNGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 88 V~~vl~G~N~tI~aYGqTGSGKTyTm 113 (614)
++.+++|.+ ++..++||+|||.+.
T Consensus 25 i~~i~~~~~--~lv~~~TGsGKT~~~ 48 (337)
T 2z0m_A 25 IPLMLQGKN--VVVRAKTGSGKTAAY 48 (337)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhcCCC--EEEEcCCCCcHHHHH
Confidence 345567776 567789999999754
No 215
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=46.11 E-value=5.2 Score=40.28 Aligned_cols=18 Identities=33% Similarity=0.455 Sum_probs=14.7
Q ss_pred ceEEEeeccCCCCcceEe
Q 035971 96 NATIVACGAKGSGKTRVI 113 (614)
Q Consensus 96 N~tI~aYGqTGSGKTyTm 113 (614)
...++-||++|+|||+++
T Consensus 48 ~~~~L~~G~~G~GKT~la 65 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVA 65 (324)
T ss_dssp CSEEEECSSTTSSHHHHH
T ss_pred CeEEEeeCcCCCCHHHHH
Confidence 356788899999999765
No 216
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=45.87 E-value=11 Score=40.64 Aligned_cols=41 Identities=24% Similarity=0.316 Sum_probs=26.5
Q ss_pred EeeeeecCCCChHHHHhhhhHHHHHHHhcCCceEEEeeccCCCCcceEe
Q 035971 65 KLDYCYEQNEGNGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 65 ~FD~VF~~~asQ~eVf~~~v~plV~~vl~G~N~tI~aYGqTGSGKTyTm 113 (614)
.||.|++.+ + .+..+++.+-.+....++-||++|+|||+..
T Consensus 178 ~ld~iiGr~----~----~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 178 SLDPVIGRS----K----EIQRVIEVLSRRTKNNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp CSCCCCCCH----H----HHHHHHHHHHCSSSCEEEEESCTTTTTHHHH
T ss_pred CCCCccCcH----H----HHHHHHHHHhccCCCCeEEECCCCCCHHHHH
Confidence 356666543 2 2333444444556667889999999999765
No 217
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=45.70 E-value=12 Score=36.42 Aligned_cols=31 Identities=23% Similarity=0.390 Sum_probs=20.0
Q ss_pred hhhHHHHHHHhcCC-----ceEEEeeccCCCCcceE
Q 035971 82 REVKPLISEVFNGI-----NATIVACGAKGSGKTRV 112 (614)
Q Consensus 82 ~~v~plV~~vl~G~-----N~tI~aYGqTGSGKTyT 112 (614)
.....++..++.|+ ...|+..|+.|||||+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTl 48 (253)
T 2p5t_B 13 HALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTI 48 (253)
T ss_dssp HHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHH
T ss_pred HHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHH
Confidence 34444444555433 24688999999999953
No 218
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=45.51 E-value=10 Score=37.77 Aligned_cols=44 Identities=18% Similarity=0.221 Sum_probs=25.8
Q ss_pred EeeeeecCCCChHHHHhhhhHHHHHHHh--cCCceEEEeeccCCCCcceEe
Q 035971 65 KLDYCYEQNEGNGIIFAREVKPLISEVF--NGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 65 ~FD~VF~~~asQ~eVf~~~v~plV~~vl--~G~N~tI~aYGqTGSGKTyTm 113 (614)
.||.+++.+ .+.. .+..++..+. .+....++-||++|+|||+..
T Consensus 10 ~~~~~ig~~----~~~~-~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 10 TLDEYIGQE----RLKQ-KLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp STTTCCSCH----HHHH-HHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHH
T ss_pred cHHHhhCHH----HHHH-HHHHHHHHHHccCCCCCcEEEECCCCCCHHHHH
Confidence 456666543 3332 2333444333 234467889999999999654
No 219
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=44.59 E-value=4.2 Score=47.38 Aligned_cols=32 Identities=25% Similarity=0.470 Sum_probs=22.5
Q ss_pred hhHHHHHHHhcCCceEEEeeccCCCCcceEee
Q 035971 83 EVKPLISEVFNGINATIVACGAKGSGKTRVIQ 114 (614)
Q Consensus 83 ~v~plV~~vl~G~N~tI~aYGqTGSGKTyTm~ 114 (614)
.+..+++.+..+....++-||++|+|||+.+.
T Consensus 178 ~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 178 EIRRVIQILLRRTKNNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp HHHHHHHHHHCSSCCCCEEEECTTSCHHHHHH
T ss_pred HHHHHHHHHhcCCCCceEEEcCCCCCHHHHHH
Confidence 34445555555655667889999999997763
No 220
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=44.34 E-value=5.2 Score=40.63 Aligned_cols=15 Identities=27% Similarity=0.563 Sum_probs=13.6
Q ss_pred EEeeccCCCCcceEe
Q 035971 99 IVACGAKGSGKTRVI 113 (614)
Q Consensus 99 I~aYGqTGSGKTyTm 113 (614)
++-||+.|+|||+++
T Consensus 39 ~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRC 53 (354)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 888999999999875
No 221
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=43.94 E-value=11 Score=38.78 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=18.2
Q ss_pred HHHHhcCCceEEEeeccCCCCcceEe
Q 035971 88 ISEVFNGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 88 V~~vl~G~N~tI~aYGqTGSGKTyTm 113 (614)
+..+++|.+. +..++||||||.+.
T Consensus 46 i~~i~~~~~~--lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 46 IPIIKEKRDL--MACAQTGSGKTAAF 69 (417)
T ss_dssp HHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHccCCCE--EEEcCCCCHHHHHH
Confidence 4556788774 67899999999753
No 222
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=43.22 E-value=22 Score=27.46 Aligned_cols=37 Identities=8% Similarity=0.276 Sum_probs=33.6
Q ss_pred HHHHHHHHhCCCCCCCHHhhhh-cCCCHHHHHHHHHHHh
Q 035971 572 SYILELREESPEPFKNLDDLKD-IGLSAKQIKGMMKKEM 609 (614)
Q Consensus 572 ~~Ii~~R~~~gg~f~~~~dL~~-~gl~~~~~~~~~~~~~ 609 (614)
+.|++|=..+|| |-++.+..+ +|++.+.+.+++.+..
T Consensus 13 ~~lL~yIr~sGG-ildI~~~a~kygV~kdeV~~~LrrLe 50 (59)
T 2xvc_A 13 RELLDYIVNNGG-FLDIEHFSKVYGVEKQEVVKLLEALK 50 (59)
T ss_dssp HHHHHHHHHTTS-EEEHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-EEeHHHHHHHhCCCHHHHHHHHHHHH
Confidence 578899889989 999999999 9999999999998866
No 223
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=42.99 E-value=9.6 Score=40.82 Aligned_cols=36 Identities=19% Similarity=0.306 Sum_probs=23.7
Q ss_pred CCChHHHHhhhhHHHHHHHhcCCceEEEeeccCCCCcceEe
Q 035971 73 NEGNGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 73 ~asQ~eVf~~~v~plV~~vl~G~N~tI~aYGqTGSGKTyTm 113 (614)
+..|.+.+... +..+.+|. ..++..|+.|||||+++
T Consensus 27 n~~Q~~av~~~----~~~i~~~~-~~~li~G~aGTGKT~ll 62 (459)
T 3upu_A 27 TEGQKNAFNIV----MKAIKEKK-HHVTINGPAGTGATTLT 62 (459)
T ss_dssp CHHHHHHHHHH----HHHHHSSS-CEEEEECCTTSCHHHHH
T ss_pred CHHHHHHHHHH----HHHHhcCC-CEEEEEeCCCCCHHHHH
Confidence 44566666533 33333333 47899999999999776
No 224
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=42.95 E-value=8 Score=36.20 Aligned_cols=28 Identities=29% Similarity=0.372 Sum_probs=19.4
Q ss_pred HHHHHHhc-CC--ceEEEeeccCCCCcceEe
Q 035971 86 PLISEVFN-GI--NATIVACGAKGSGKTRVI 113 (614)
Q Consensus 86 plV~~vl~-G~--N~tI~aYGqTGSGKTyTm 113 (614)
+.++.++. |. ...+.-+|++|+|||+.+
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHH
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHH
Confidence 44566665 33 235677899999999765
No 225
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=42.65 E-value=13 Score=40.32 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=20.5
Q ss_pred HHHHHhcCCceEEEeeccCCCCcceE
Q 035971 87 LISEVFNGINATIVACGAKGSGKTRV 112 (614)
Q Consensus 87 lV~~vl~G~N~tI~aYGqTGSGKTyT 112 (614)
++..++.|.+.-++..++||||||.+
T Consensus 102 ~i~~~l~~~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 102 TIKPILSSEDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp HHHHHHSSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCCCccHH
Confidence 45566766666789999999999976
No 226
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=42.54 E-value=15 Score=40.95 Aligned_cols=48 Identities=21% Similarity=0.312 Sum_probs=38.7
Q ss_pred hccCCCCCHHHHHHHHHHHHhCC---------CCCCCHHhhhh-cCCCHHHHHHHHHH
Q 035971 560 LKRLKGIGEKRASYILELREESP---------EPFKNLDDLKD-IGLSAKQIKGMMKK 607 (614)
Q Consensus 560 L~~l~gig~~~A~~Ii~~R~~~g---------g~f~~~~dL~~-~gl~~~~~~~~~~~ 607 (614)
|..|||||+.++..|-++-+... .....+.+|.+ .|++++.+..|+..
T Consensus 55 ~~~lp~iG~~~~~~i~~~v~~g~~~l~~~~~~~~~~~~~~l~~v~GvGpk~A~~~~~~ 112 (575)
T 3b0x_A 55 LMELPGVGPDLAEKILEFLRTGKVRKHEELSRKVPRGVLEVMEVPGVGPKTARLLYEG 112 (575)
T ss_dssp HHTSTTCCHHHHHHHHHHHHHSSCHHHHHHHHHSCHHHHHHHTSTTTCHHHHHHHHHT
T ss_pred HHhCCCCCHHHHHHHHHHHHcCcHHHHhhhhhhhHHHHHHHhcCCCcCHHHHHHHHHh
Confidence 99999999999999999865531 01345677888 99999999999885
No 227
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=41.95 E-value=6.8 Score=39.62 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=17.0
Q ss_pred HHHHhcCCceEEEeeccCCCCcceEe
Q 035971 88 ISEVFNGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 88 V~~vl~G~N~tI~aYGqTGSGKTyTm 113 (614)
...+..|. .++-||++|+|||+.+
T Consensus 40 ~~~l~~~~--~vll~G~pGtGKT~la 63 (331)
T 2r44_A 40 LIGICTGG--HILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHHTC--CEEEESCCCHHHHHHH
T ss_pred HHHHHcCC--eEEEECCCCCcHHHHH
Confidence 33344443 5788999999999765
No 228
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=41.90 E-value=7.4 Score=30.30 Aligned_cols=28 Identities=14% Similarity=0.343 Sum_probs=23.3
Q ss_pred HhhhccCCHHhhccCCCCCHHH-HHHHHHHH
Q 035971 549 LKLLNTGGKEDLKRLKGIGEKR-ASYILELR 578 (614)
Q Consensus 549 ~~~lN~A~~~~L~~l~gig~~~-A~~Ii~~R 578 (614)
+..|=.|+.+||..+ ||.+. |+.|.++=
T Consensus 27 ~~~i~~As~eeL~~v--ig~~~~A~~I~~~l 55 (63)
T 2a1j_A 27 IAELAALSQDELTSI--LGNAANAKQLYDFI 55 (63)
T ss_dssp HHHHHTCCHHHHHHH--HSCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHH--cCchHHHHHHHHHH
Confidence 344668999999999 99999 99997654
No 229
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=41.80 E-value=5.4 Score=40.84 Aligned_cols=16 Identities=31% Similarity=0.580 Sum_probs=13.5
Q ss_pred EEEeeccCCCCcceEe
Q 035971 98 TIVACGAKGSGKTRVI 113 (614)
Q Consensus 98 tI~aYGqTGSGKTyTm 113 (614)
.++-||++|+|||+.+
T Consensus 53 ~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CEEEESSTTSSHHHHH
T ss_pred eEEEECCCCCcHHHHH
Confidence 4677999999999765
No 230
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=41.76 E-value=6 Score=36.27 Aligned_cols=17 Identities=35% Similarity=0.608 Sum_probs=14.2
Q ss_pred eEEEeeccCCCCcceEe
Q 035971 97 ATIVACGAKGSGKTRVI 113 (614)
Q Consensus 97 ~tI~aYGqTGSGKTyTm 113 (614)
..+...|++|||||+.+
T Consensus 10 ei~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFA 26 (171)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 35778899999999776
No 231
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=41.66 E-value=12 Score=39.49 Aligned_cols=24 Identities=38% Similarity=0.657 Sum_probs=18.7
Q ss_pred HHHHHhcCCceEEEeeccCCCCcceE
Q 035971 87 LISEVFNGINATIVACGAKGSGKTRV 112 (614)
Q Consensus 87 lV~~vl~G~N~tI~aYGqTGSGKTyT 112 (614)
.+..++.|.+ +++.++||||||..
T Consensus 86 ai~~i~~g~d--~i~~a~TGsGKT~a 109 (434)
T 2db3_A 86 SIPVISSGRD--LMACAQTGSGKTAA 109 (434)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHhcCCC--EEEECCCCCCchHH
Confidence 4555678876 57888999999975
No 232
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=41.33 E-value=7.3 Score=38.49 Aligned_cols=24 Identities=8% Similarity=0.079 Sum_probs=16.1
Q ss_pred HHHHhcCCceEEEeeccCCCCcceEe
Q 035971 88 ISEVFNGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 88 V~~vl~G~N~tI~aYGqTGSGKTyTm 113 (614)
+..++.|.++ +..++||+|||.+.
T Consensus 122 i~~~l~~~~~--ll~~~tGsGKT~~~ 145 (282)
T 1rif_A 122 VFEGLVNRRR--ILNLPTSAGRSLIQ 145 (282)
T ss_dssp HHHHHHHSEE--EECCCTTSCHHHHH
T ss_pred HHHHHhcCCe--EEEcCCCCCcHHHH
Confidence 3344555444 33899999999764
No 233
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=41.19 E-value=8.8 Score=35.78 Aligned_cols=28 Identities=21% Similarity=0.349 Sum_probs=21.1
Q ss_pred HHHHHHhc-CCc--eEEEeeccCCCCcceEe
Q 035971 86 PLISEVFN-GIN--ATIVACGAKGSGKTRVI 113 (614)
Q Consensus 86 plV~~vl~-G~N--~tI~aYGqTGSGKTyTm 113 (614)
+-++.++. |.. ..+..+|++|+|||..+
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~ 37 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLA 37 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHH
Confidence 55677775 443 47889999999999654
No 234
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=41.18 E-value=8.5 Score=41.74 Aligned_cols=25 Identities=16% Similarity=0.345 Sum_probs=19.2
Q ss_pred HHHHhcCCceEEEeeccCCCCcceE
Q 035971 88 ISEVFNGINATIVACGAKGSGKTRV 112 (614)
Q Consensus 88 V~~vl~G~N~tI~aYGqTGSGKTyT 112 (614)
+..+++|.+..++..++||||||.+
T Consensus 150 i~~i~~~~~~~~ll~apTGsGKT~~ 174 (508)
T 3fho_A 150 LPLLLSNPPRNMIGQSQSGTGKTAA 174 (508)
T ss_dssp HHHHHCSSCCCEEEECCSSTTSHHH
T ss_pred HHHHHcCCCCCEEEECCCCccHHHH
Confidence 4556777445678889999999986
No 235
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=41.16 E-value=24 Score=30.96 Aligned_cols=42 Identities=24% Similarity=0.316 Sum_probs=27.7
Q ss_pred HhhccCCCCCHHHHHHHHHHHHhCCCCCCCHHhhhhcCCCHHHHHHHHH
Q 035971 558 EDLKRLKGIGEKRASYILELREESPEPFKNLDDLKDIGLSAKQIKGMMK 606 (614)
Q Consensus 558 ~~L~~l~gig~~~A~~Ii~~R~~~gg~f~~~~dL~~~gl~~~~~~~~~~ 606 (614)
-.|..|+|||...|..|++.=.-. |-+-+-| |+.++++++..
T Consensus 16 ~aLt~I~GIG~~~A~~I~~~~gid--~~~r~~~-----Lt~~ei~~l~~ 57 (114)
T 3r8n_M 16 IALTSIYGVGKTRSKAILAAAGIA--EDVKISE-----LSEGQIDTLRD 57 (114)
T ss_dssp HHGGGSTTCCHHHHHHHHHHTTCC--TTCCSTT-----CCHHHHHHHHH
T ss_pred hhHhhhcCcCHHHHHHHHHHcCcC--cccCccc-----CCHHHHHHHHH
Confidence 468899999999999999753222 2222222 56666666654
No 236
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=41.10 E-value=9.8 Score=35.67 Aligned_cols=29 Identities=31% Similarity=0.494 Sum_probs=20.8
Q ss_pred HHHHHHHhc-CC--ceEEEeeccCCCCcceEe
Q 035971 85 KPLISEVFN-GI--NATIVACGAKGSGKTRVI 113 (614)
Q Consensus 85 ~plV~~vl~-G~--N~tI~aYGqTGSGKTyTm 113 (614)
-+-++.++. |. ...+.-+|++|||||..+
T Consensus 11 ~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 11 SKSLDKLLGGGIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp CHHHHHHTTSSEESSEEEEEEESTTSSHHHHH
T ss_pred ChhHHhHhcCCCCCCcEEEEECCCCCCHHHHH
Confidence 355667774 33 346888899999999765
No 237
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=41.08 E-value=11 Score=37.22 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=15.7
Q ss_pred cCCceEEEeeccCCCCcceEe
Q 035971 93 NGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 93 ~G~N~tI~aYGqTGSGKTyTm 113 (614)
.|.-..++-||+.|+|||+..
T Consensus 39 ~~~~~~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 39 DGNMPHMIISGMPGIGKTTSV 59 (323)
T ss_dssp SCCCCCEEEECSTTSSHHHHH
T ss_pred cCCCCeEEEECcCCCCHHHHH
Confidence 444333899999999999654
No 238
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=41.01 E-value=28 Score=26.36 Aligned_cols=37 Identities=22% Similarity=0.257 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHhhhh-cCCCHHHHHHHHHH
Q 035971 568 EKRASYILELREESPEPFKNLDDLKD-IGLSAKQIKGMMKK 607 (614)
Q Consensus 568 ~~~A~~Ii~~R~~~gg~f~~~~dL~~-~gl~~~~~~~~~~~ 607 (614)
..++++|-++|+..| + +..||.+ +|++...+.+|.++
T Consensus 12 ~~~~~~l~~~r~~~g--~-s~~~lA~~~gis~~~i~~~e~g 49 (74)
T 1y7y_A 12 VKFGQRLRELRTAKG--L-SQETLAFLSGLDRSYVGGVERG 49 (74)
T ss_dssp HHHHHHHHHHHHHTT--C-CHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcC--C-CHHHHHHHHCcCHHHHHHHHCC
Confidence 356888999999984 3 8899999 99999999998765
No 239
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=40.99 E-value=9.6 Score=36.54 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=17.9
Q ss_pred HHHHHHhcCCceEEEeeccCCCCcceEe
Q 035971 86 PLISEVFNGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 86 plV~~vl~G~N~tI~aYGqTGSGKTyTm 113 (614)
.+++++-.|--. .-.|+.|||||+.+
T Consensus 14 ~~l~~i~~Ge~~--~liG~nGsGKSTLl 39 (208)
T 3b85_A 14 HYVDAIDTNTIV--FGLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHHCSEE--EEECCTTSSTTHHH
T ss_pred HHHHhccCCCEE--EEECCCCCCHHHHH
Confidence 345555556544 44799999999765
No 240
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=40.95 E-value=14 Score=31.47 Aligned_cols=43 Identities=21% Similarity=0.248 Sum_probs=30.8
Q ss_pred cchhhhHHHHHhhhccCCHHhhccCCCCCHHHHHHHHHHHHhC
Q 035971 539 GMKNSLVQEYLKLLNTGGKEDLKRLKGIGEKRASYILELREES 581 (614)
Q Consensus 539 ~~~~~l~~~~~~~lN~A~~~~L~~l~gig~~~A~~Ii~~R~~~ 581 (614)
++-..+.+..+..=.=.+.+||..++|||++..+.|-.|....
T Consensus 33 GIG~~~A~~IV~~GpF~s~edL~~V~Gig~~~~e~l~~~l~~f 75 (97)
T 3arc_U 33 GLYPTLAKLIVKNAPYESVEDVLNIPGLTERQKQILRENLEHF 75 (97)
T ss_dssp TCTTHHHHHHHHHCCCSSGGGGGGCTTCCHHHHHHHHHTGGGE
T ss_pred CCCHHHHHHHHHcCCCCCHHHHHhccCCCHHHHHHHHHHhcee
Confidence 3444445555542234688999999999999999998887643
No 241
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=40.87 E-value=20 Score=39.85 Aligned_cols=54 Identities=19% Similarity=0.258 Sum_probs=36.7
Q ss_pred hccCCHHhhccCCCCCHHHHHHHHHHHHhCCCCCC-----------CHHhhhh-cCCCHHHHHHHHHH
Q 035971 552 LNTGGKEDLKRLKGIGEKRASYILELREESPEPFK-----------NLDDLKD-IGLSAKQIKGMMKK 607 (614)
Q Consensus 552 lN~A~~~~L~~l~gig~~~A~~Ii~~R~~~gg~f~-----------~~~dL~~-~gl~~~~~~~~~~~ 607 (614)
|+....++|..|||||+..+..|-++=+.. ... .+.+|.+ .|++++.+.+|++.
T Consensus 51 i~~~~~~~~~~lp~iG~~~~~~i~~~v~~g--~~~~~~~~~~~~~~~~~~L~~v~GVGpk~A~~i~~~ 116 (578)
T 2w9m_A 51 TPELLAREFTGIPKVGKGIAAELSDFARSG--TFAPLEAAAGQLPPGLLDLLGVRGLGPKKIRSLWLA 116 (578)
T ss_dssp --------CCSSTTCCHHHHHHHHHHHHHS--SCHHHHHHHHHSCHHHHHHTTSTTCCHHHHHHHHHT
T ss_pred hhhhhHhhhhhcCCCChhHHHHHHHHHcCC--hHHHHHHHhhhhHHHHHHHhCCCCcCHHHHHHHHHc
Confidence 555544459999999999999998876443 132 3456777 89999999999985
No 242
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=40.84 E-value=9.5 Score=38.77 Aligned_cols=18 Identities=28% Similarity=0.552 Sum_probs=15.1
Q ss_pred ceEEEeeccCCCCcceEe
Q 035971 96 NATIVACGAKGSGKTRVI 113 (614)
Q Consensus 96 N~tI~aYGqTGSGKTyTm 113 (614)
...++-||+.|+|||+++
T Consensus 38 ~~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp CSEEEEESCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457899999999999764
No 243
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=40.50 E-value=8.6 Score=34.02 Aligned_cols=14 Identities=43% Similarity=0.722 Sum_probs=12.3
Q ss_pred EEEeeccCCCCcce
Q 035971 98 TIVACGAKGSGKTR 111 (614)
Q Consensus 98 tI~aYGqTGSGKTy 111 (614)
.|+..|++|||||+
T Consensus 3 ~I~l~G~~GsGKsT 16 (179)
T 3lw7_A 3 VILITGMPGSGKSE 16 (179)
T ss_dssp EEEEECCTTSCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47889999999995
No 244
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=40.50 E-value=26 Score=26.95 Aligned_cols=38 Identities=16% Similarity=0.344 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHhhhh-cCCCHHHHHHHHHHH
Q 035971 568 EKRASYILELREESPEPFKNLDDLKD-IGLSAKQIKGMMKKE 608 (614)
Q Consensus 568 ~~~A~~Ii~~R~~~gg~f~~~~dL~~-~gl~~~~~~~~~~~~ 608 (614)
..++++|-++|+..| + +..+|.+ +|++...+.+|.++.
T Consensus 6 ~~~~~~l~~~r~~~g--~-sq~~lA~~~gis~~~i~~~e~g~ 44 (78)
T 3b7h_A 6 EFVSEHLMELITQQN--L-TINRVATLAGLNQSTVNAMFEGR 44 (78)
T ss_dssp HHHHHHHHHHHHHTT--C-CHHHHHHHHTCCHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcC--C-CHHHHHHHHCcCHHHHHHHHcCC
Confidence 457888999999884 3 8899999 999999999887653
No 245
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=40.12 E-value=10 Score=38.32 Aligned_cols=19 Identities=37% Similarity=0.560 Sum_probs=15.7
Q ss_pred CCceEEEeeccCCCCcceE
Q 035971 94 GINATIVACGAKGSGKTRV 112 (614)
Q Consensus 94 G~N~tI~aYGqTGSGKTyT 112 (614)
..+..|+-||++|+|||+.
T Consensus 23 ~~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELV 41 (304)
T ss_dssp STTSCEEEESCTTSCHHHH
T ss_pred CCCCcEEEECCCCchHHHH
Confidence 4466789999999999954
No 246
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=39.99 E-value=29 Score=31.77 Aligned_cols=42 Identities=17% Similarity=0.389 Sum_probs=29.3
Q ss_pred HhhccCCCCCHHHHHHHHHHHHhCCCCCCCHHhhhhcC-CCHHHHHHHHHH
Q 035971 558 EDLKRLKGIGEKRASYILELREESPEPFKNLDDLKDIG-LSAKQIKGMMKK 607 (614)
Q Consensus 558 ~~L~~l~gig~~~A~~Ii~~R~~~gg~f~~~~dL~~~g-l~~~~~~~~~~~ 607 (614)
-.|..|+|||...|..|++.=.-. |-+ .+| |+.++++++..-
T Consensus 30 ~ALt~I~GIG~~~A~~I~~~~gid--~~~------r~g~Lt~~ei~~l~~~ 72 (146)
T 3u5c_S 30 YALTTIKGVGRRYSNLVCKKADVD--LHK------RAGELTQEELERIVQI 72 (146)
T ss_dssp TTGGGSTTCCHHHHHHHHHHHTCC--TTS------CSSSCCHHHHHHHHHH
T ss_pred hhHhhhcCCCHHHHHHHHHHcCCC--CCc------eeccCCHHHHHHHHHH
Confidence 468899999999999999765433 222 233 577777776543
No 247
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=39.97 E-value=14 Score=37.64 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=18.8
Q ss_pred HHHHHhcCCceEEEeeccCCCCcceEe
Q 035971 87 LISEVFNGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 87 lV~~vl~G~N~tI~aYGqTGSGKTyTm 113 (614)
.+..++.|.+ ++..++||+|||.+.
T Consensus 38 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 62 (391)
T 1xti_A 38 CIPQAILGMD--VLCQAKSGMGKTAVF 62 (391)
T ss_dssp HHHHHTTTCC--EEEECSSCSSHHHHH
T ss_pred HHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 4556677876 567789999999764
No 248
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=39.73 E-value=11 Score=35.41 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=19.3
Q ss_pred hHHHHHHHhc--CCceEEEeeccCCCCcceEe
Q 035971 84 VKPLISEVFN--GINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 84 v~plV~~vl~--G~N~tI~aYGqTGSGKTyTm 113 (614)
+..+++.+.. +....|.-.|++|||||+.+
T Consensus 8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 3344444442 34456777899999999654
No 249
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=39.34 E-value=27 Score=26.04 Aligned_cols=35 Identities=17% Similarity=0.251 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhCCCCCCCHHhhhh-cCCCHHHHHHHHHH
Q 035971 570 RASYILELREESPEPFKNLDDLKD-IGLSAKQIKGMMKK 607 (614)
Q Consensus 570 ~A~~Ii~~R~~~gg~f~~~~dL~~-~gl~~~~~~~~~~~ 607 (614)
++++|-++|+.. | + +..||.+ +|++...+.+|.++
T Consensus 2 ~~~~l~~~r~~~-g-l-sq~~lA~~~gis~~~i~~~e~g 37 (69)
T 1r69_A 2 ISSRVKSKRIQL-G-L-NQAELAQKVGTTQQSIEQLENG 37 (69)
T ss_dssp HHHHHHHHHHHT-T-C-CHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHc-C-C-CHHHHHHHHCcCHHHHHHHHcC
Confidence 456777778777 3 3 6778887 88888888877654
No 250
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=39.28 E-value=13 Score=34.80 Aligned_cols=30 Identities=20% Similarity=0.201 Sum_probs=19.9
Q ss_pred hHHHHHHHhc---CCceEEEeeccCCCCcceEe
Q 035971 84 VKPLISEVFN---GINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 84 v~plV~~vl~---G~N~tI~aYGqTGSGKTyTm 113 (614)
+..+++.+.. .....|...|++|||||+.+
T Consensus 7 ~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 7 IDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp HHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHH
T ss_pred HHHHHHHHHHhccCCCeEEEEECCCCCCHHHHH
Confidence 3344455443 33457888999999999654
No 251
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=39.07 E-value=16 Score=40.73 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=19.2
Q ss_pred HHHHHhcCCceEEEeeccCCCCcceE
Q 035971 87 LISEVFNGINATIVACGAKGSGKTRV 112 (614)
Q Consensus 87 lV~~vl~G~N~tI~aYGqTGSGKTyT 112 (614)
+|+.++.|.+ +++.++||+|||.+
T Consensus 52 ~i~~il~g~d--~lv~~pTGsGKTl~ 75 (591)
T 2v1x_A 52 TINVTMAGKE--VFLVMPTGGGKSLC 75 (591)
T ss_dssp HHHHHHTTCC--EEEECCTTSCTTHH
T ss_pred HHHHHHcCCC--EEEEECCCChHHHH
Confidence 4556778888 67788999999975
No 252
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=38.56 E-value=22 Score=30.65 Aligned_cols=43 Identities=16% Similarity=0.172 Sum_probs=32.5
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCCCHHhhhh-cCCCHHHHHHHHHH
Q 035971 563 LKGIGEKRASYILELREESPEPFKNLDDLKD-IGLSAKQIKGMMKK 607 (614)
Q Consensus 563 l~gig~~~A~~Ii~~R~~~gg~f~~~~dL~~-~gl~~~~~~~~~~~ 607 (614)
+..--.++|+.|+++.+.. ++.++.+|.+ .|.|...|-++.++
T Consensus 19 ls~~e~~ia~yil~~~~~~--~~~si~elA~~~~vS~aTv~Rf~kk 62 (111)
T 2o3f_A 19 LPPSERKLADYILAHPHXA--IESTVNEISALANSSDAAVIRLCXS 62 (111)
T ss_dssp SCHHHHHHHHHHHHCHHHH--HTCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHChHHH--HhcCHHHHHHHHCCCHHHHHHHHHH
Confidence 3334456888888888777 5778888888 88888888887765
No 253
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=38.56 E-value=32 Score=26.32 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHhhhh-cCCCHHHHHHHHHH
Q 035971 568 EKRASYILELREESPEPFKNLDDLKD-IGLSAKQIKGMMKK 607 (614)
Q Consensus 568 ~~~A~~Ii~~R~~~gg~f~~~~dL~~-~gl~~~~~~~~~~~ 607 (614)
..++++|-++|+..| + +..+|.+ +|++...+.+|.++
T Consensus 9 ~~~~~~l~~~r~~~g--l-sq~~lA~~~gis~~~i~~~e~g 46 (77)
T 2b5a_A 9 RKFGRTLKKIRTQKG--V-SQEELADLAGLHRTYISEVERG 46 (77)
T ss_dssp HHHHHHHHHHHHHTT--C-CHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcC--C-CHHHHHHHHCCCHHHHHHHHCC
Confidence 356788888898883 3 7889988 99999999888764
No 254
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=38.35 E-value=5 Score=44.06 Aligned_cols=46 Identities=17% Similarity=0.302 Sum_probs=27.1
Q ss_pred eeEeeeeecCCCChHHHHhhhhHHHHHHH-----hcCC----ceEEEeeccCCCCcceEe
Q 035971 63 CYKLDYCYEQNEGNGIIFAREVKPLISEV-----FNGI----NATIVACGAKGSGKTRVI 113 (614)
Q Consensus 63 ~F~FD~VF~~~asQ~eVf~~~v~plV~~v-----l~G~----N~tI~aYGqTGSGKTyTm 113 (614)
.+.||.|.+.+..-.++ ..++..+ +... ...|+-||++|+|||+.+
T Consensus 27 ~~~f~dv~G~~~~k~~l-----~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 27 KVTFKDVAGAEEAKEEL-----KEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCTTSSCSCHHHHHHH-----HHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHcCCcHHHHHHH-----HHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHH
Confidence 46678777655333333 3333322 2221 234899999999999764
No 255
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=38.33 E-value=15 Score=39.38 Aligned_cols=25 Identities=44% Similarity=0.643 Sum_probs=18.6
Q ss_pred HHHHHhcCCceEEEeeccCCCCcceEe
Q 035971 87 LISEVFNGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 87 lV~~vl~G~N~tI~aYGqTGSGKTyTm 113 (614)
.+..++.|.+ ++..++||||||.+.
T Consensus 15 ~i~~~~~~~~--~l~~~~tGsGKT~~~ 39 (556)
T 4a2p_A 15 LAQPAINGKN--ALICAPTGSGKTFVS 39 (556)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHcCCC--EEEEcCCCChHHHHH
Confidence 3445677877 567789999999763
No 256
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=38.23 E-value=38 Score=27.24 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=28.3
Q ss_pred ccCCHHhhccCCCCCHHHHHHHHHHHHhCCCCCC
Q 035971 553 NTGGKEDLKRLKGIGEKRASYILELREESPEPFK 586 (614)
Q Consensus 553 N~A~~~~L~~l~gig~~~A~~Ii~~R~~~gg~f~ 586 (614)
-.-+.+||+.++|+|++-.+.|.+-=++.|-.|.
T Consensus 36 ~~~s~~dLlki~n~G~kSl~EI~~~L~~~gl~l~ 69 (73)
T 1z3e_B 36 ANKTEEDMMKVRNLGRKSLEEVKAKLEELGLGLR 69 (73)
T ss_dssp HTSCHHHHHTSTTCCHHHHHHHHHHHHHTTCCCC
T ss_pred HcCCHHHHHHcCCCCHHHHHHHHHHHHHhCCCCC
Confidence 3468999999999999999999988877754453
No 257
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=37.96 E-value=23 Score=39.98 Aligned_cols=30 Identities=30% Similarity=0.546 Sum_probs=24.9
Q ss_pred HHhhccCCCCCHHHHHHHHHHHHhCCCCCCCHHhhh
Q 035971 557 KEDLKRLKGIGEKRASYILELREESPEPFKNLDDLK 592 (614)
Q Consensus 557 ~~~L~~l~gig~~~A~~Ii~~R~~~gg~f~~~~dL~ 592 (614)
.-.|.+|||||+..|+++. .. | |++++||.
T Consensus 656 ~~~L~qlp~i~~~rar~L~----~~-g-~~s~~~l~ 685 (715)
T 2va8_A 656 LLELVQISGVGRKRARLLY----NN-G-IKELGDVV 685 (715)
T ss_dssp GHHHHTSTTCCHHHHHHHH----HT-T-CCSHHHHH
T ss_pred hcchhhCCCCCHHHHHHHH----Hc-C-CCCHHHHh
Confidence 4568899999999999884 33 5 99999995
No 258
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=37.89 E-value=21 Score=30.70 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=38.5
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCCCCCHHhhhh-cCCCHHHHHHHHHHH
Q 035971 562 RLKGIGEKRASYILELREESPEPFKNLDDLKD-IGLSAKQIKGMMKKE 608 (614)
Q Consensus 562 ~l~gig~~~A~~Ii~~R~~~gg~f~~~~dL~~-~gl~~~~~~~~~~~~ 608 (614)
.+..--.++|+.|++..+.. ++.++.+|.+ .|.|+..|-++.++.
T Consensus 14 ~lt~~e~~ia~yil~~~~~~--~~~si~elA~~~~vS~aTv~Rf~kkL 59 (107)
T 3iwf_A 14 YFTKNEKKIAQFILNYPHKV--VNMTSQEIANQLETSSTSIIRLSKKV 59 (107)
T ss_dssp GSCHHHHHHHHHHHHCHHHH--TTCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHhCHHHH--HHCCHHHHHHHHCCCHHHHHHHHHHh
Confidence 34445568999999999988 6999999999 999999999998764
No 259
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=37.79 E-value=13 Score=37.71 Aligned_cols=17 Identities=41% Similarity=0.698 Sum_probs=14.7
Q ss_pred eEEEeeccCCCCcceEe
Q 035971 97 ATIVACGAKGSGKTRVI 113 (614)
Q Consensus 97 ~tI~aYGqTGSGKTyTm 113 (614)
..+.-.|++|||||+++
T Consensus 101 ~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 46788899999999876
No 260
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=37.73 E-value=17 Score=41.60 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=21.3
Q ss_pred hHHHHHHHhcCCceEEEeeccCCCCcceEe
Q 035971 84 VKPLISEVFNGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 84 v~plV~~vl~G~N~tI~aYGqTGSGKTyTm 113 (614)
+..+++.+..+....++-||++|+|||...
T Consensus 189 i~~l~~~l~~~~~~~vLL~G~pGtGKT~la 218 (758)
T 3pxi_A 189 IQRVIEVLSRRTKNNPVLIGEPGVGKTAIA 218 (758)
T ss_dssp HHHHHHHHHCSSSCEEEEESCTTTTTHHHH
T ss_pred HHHHHHHHhCCCCCCeEEECCCCCCHHHHH
Confidence 334444555566667899999999999654
No 261
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=37.73 E-value=30 Score=31.94 Aligned_cols=42 Identities=21% Similarity=0.347 Sum_probs=29.1
Q ss_pred HhhccCCCCCHHHHHHHHHHHHhCCCCCCCHHhhhhcCCCHHHHHHHHH
Q 035971 558 EDLKRLKGIGEKRASYILELREESPEPFKNLDDLKDIGLSAKQIKGMMK 606 (614)
Q Consensus 558 ~~L~~l~gig~~~A~~Ii~~R~~~gg~f~~~~dL~~~gl~~~~~~~~~~ 606 (614)
-.|..|+|||...|..|++.=.-. |-+-+-| |+.++++++..
T Consensus 28 ~ALt~I~GIG~~~A~~I~~~~gid--~~~r~g~-----Lt~~ei~~l~~ 69 (152)
T 3iz6_M 28 FALTSIKGVGRRFSNIVCKKADID--MNKRAGE-----LSAEEMDRLMA 69 (152)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHTCC--SSSBTTT-----SCHHHHHHHHH
T ss_pred hhhhhccCcCHHHHHHHHHHcCCC--CCcEeCc-----CCHHHHHHHHH
Confidence 468899999999999999766433 2332222 57777776654
No 262
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=37.23 E-value=47 Score=24.91 Aligned_cols=37 Identities=8% Similarity=0.173 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHhhhh-cC--CCHHHHHHHHHH
Q 035971 568 EKRASYILELREESPEPFKNLDDLKD-IG--LSAKQIKGMMKK 607 (614)
Q Consensus 568 ~~~A~~Ii~~R~~~gg~f~~~~dL~~-~g--l~~~~~~~~~~~ 607 (614)
..++++|-++|+..| + +.+||.+ .| ++...+.+|.++
T Consensus 7 ~~~g~~l~~~r~~~g--l-sq~~lA~~~g~~is~~~i~~~e~g 46 (71)
T 2ewt_A 7 KQLGAKLRAIRTQQG--L-SLHGVEEKSQGRWKAVVVGSYERG 46 (71)
T ss_dssp HHHHHHHHHHHHHTT--C-CHHHHHHHTTTSSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcC--C-CHHHHHHHHCCcCCHHHHHHHHCC
Confidence 346788889999983 3 8899999 99 999999998765
No 263
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=37.13 E-value=7.4 Score=42.40 Aligned_cols=46 Identities=20% Similarity=0.235 Sum_probs=27.4
Q ss_pred eeEeeeeecCCCChHHHHhhhhHHHHHHH-----hcC----CceEEEeeccCCCCcceEe
Q 035971 63 CYKLDYCYEQNEGNGIIFAREVKPLISEV-----FNG----INATIVACGAKGSGKTRVI 113 (614)
Q Consensus 63 ~F~FD~VF~~~asQ~eVf~~~v~plV~~v-----l~G----~N~tI~aYGqTGSGKTyTm 113 (614)
.++||.|.+.+..-+++. .++..+ +.. ....|+-||++|+|||+.+
T Consensus 12 ~~~f~di~G~~~~~~~l~-----e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 12 RVTFKDVGGAEEAIEELK-----EVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCGGGCCSCHHHHHHHH-----HHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHH-----HHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 456787777654333333 333322 111 2345999999999999654
No 264
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=37.03 E-value=41 Score=34.32 Aligned_cols=43 Identities=14% Similarity=0.210 Sum_probs=31.2
Q ss_pred HhhccCCCCCHHHHHHHHHHHHhCCCCCCCHHhhhh---------cCCCHHHHHHHHH
Q 035971 558 EDLKRLKGIGEKRASYILELREESPEPFKNLDDLKD---------IGLSAKQIKGMMK 606 (614)
Q Consensus 558 ~~L~~l~gig~~~A~~Ii~~R~~~gg~f~~~~dL~~---------~gl~~~~~~~~~~ 606 (614)
..|.+|||||+..++++- .. | +++++||.+ .|++.++.+++.+
T Consensus 157 ~pL~Qlp~i~~~~~~~l~----~~-~-i~s~~~l~~~~~~e~~~ll~~~~~~~~~v~~ 208 (328)
T 3im1_A 157 NPLRQIPHFNNKILEKCK----EI-N-VETVYDIMALEDEERDEILTLTDSQLAQVAA 208 (328)
T ss_dssp CGGGGSTTCCHHHHHHHH----HT-T-CCSHHHHHHSCHHHHHHHCCCCHHHHHHHHH
T ss_pred CceeCCCCCCHHHHHHHH----hC-C-CCCHHHHhcCCHHHHHhHhCCCHHHHHHHHH
Confidence 468999999999998863 23 4 888888865 5677666665543
No 265
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=36.97 E-value=11 Score=42.31 Aligned_cols=19 Identities=32% Similarity=0.520 Sum_probs=15.7
Q ss_pred ceEEEeeccCCCCcceEee
Q 035971 96 NATIVACGAKGSGKTRVIQ 114 (614)
Q Consensus 96 N~tI~aYGqTGSGKTyTm~ 114 (614)
+..++..|++|||||+++.
T Consensus 164 ~~~~vi~G~pGTGKTt~l~ 182 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVA 182 (608)
T ss_dssp BSEEEEECCTTSTHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHH
Confidence 3567889999999998863
No 266
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=36.97 E-value=8.1 Score=39.98 Aligned_cols=18 Identities=39% Similarity=0.604 Sum_probs=15.0
Q ss_pred ceEEEeeccCCCCcceEe
Q 035971 96 NATIVACGAKGSGKTRVI 113 (614)
Q Consensus 96 N~tI~aYGqTGSGKTyTm 113 (614)
...|+-||++|+|||++.
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 456899999999999654
No 267
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=36.69 E-value=12 Score=39.67 Aligned_cols=24 Identities=25% Similarity=0.195 Sum_probs=17.4
Q ss_pred HHHHhcCCceEEEeeccCCCCcceEe
Q 035971 88 ISEVFNGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 88 V~~vl~G~N~tI~aYGqTGSGKTyTm 113 (614)
++.++.|.+ ++..++||+|||.+.
T Consensus 102 i~~i~~~~~--~ll~~~TGsGKT~~~ 125 (472)
T 2fwr_A 102 LERWLVDKR--GCIVLPTGSGKTHVA 125 (472)
T ss_dssp HHHHTTTTE--EEEECCTTSCHHHHH
T ss_pred HHHHHhcCC--EEEEeCCCCCHHHHH
Confidence 344556654 677899999999874
No 268
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=36.42 E-value=16 Score=42.39 Aligned_cols=75 Identities=21% Similarity=0.218 Sum_probs=47.9
Q ss_pred eEeeeeecCCCChHHHHhhhhHHHHH-HHhcCCc----eEEEeeccCCCCcceEee------c--------C---CCCcc
Q 035971 64 YKLDYCYEQNEGNGIIFAREVKPLIS-EVFNGIN----ATIVACGAKGSGKTRVIQ------G--------S---YEEPG 121 (614)
Q Consensus 64 F~FD~VF~~~asQ~eVf~~~v~plV~-~vl~G~N----~tI~aYGqTGSGKTyTm~------G--------~---~~~~G 121 (614)
..||.|-+-+..-+++.+.+.-|+.. .++.++. ..|+-||+.|+|||...- | . ....|
T Consensus 201 v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~g 280 (806)
T 3cf2_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG 280 (806)
T ss_dssp CCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTT
T ss_pred CChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccch
Confidence 45677777666666666655555542 3455543 369999999999996531 1 0 13456
Q ss_pred hhHHHHHHHHhhccccC
Q 035971 122 LAALAVDEILSISEKMG 138 (614)
Q Consensus 122 Lipral~~LF~~~~~~~ 138 (614)
--...++.+|+.+....
T Consensus 281 ese~~lr~lF~~A~~~~ 297 (806)
T 3cf2_A 281 ESESNLRKAFEEAEKNA 297 (806)
T ss_dssp HHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 66677888888776543
No 269
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=35.59 E-value=33 Score=25.67 Aligned_cols=35 Identities=11% Similarity=0.137 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhCCCCCCCHHhhhh-cCCCHHHHHHHHHH
Q 035971 570 RASYILELREESPEPFKNLDDLKD-IGLSAKQIKGMMKK 607 (614)
Q Consensus 570 ~A~~Ii~~R~~~gg~f~~~~dL~~-~gl~~~~~~~~~~~ 607 (614)
++++|-++|+.. | + +..||.+ +|++...+.+|.++
T Consensus 4 ~~~~l~~~r~~~-g-l-sq~~lA~~~gis~~~i~~~e~g 39 (71)
T 1zug_A 4 LSERLKKRRIAL-K-M-TQTELATKAGVKQQSIQLIEAG 39 (71)
T ss_dssp HHHHHHHHHHHT-T-C-CHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHc-C-C-CHHHHHHHhCCCHHHHHHHHcC
Confidence 456777788877 3 3 7788888 88888888887654
No 270
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=35.52 E-value=11 Score=38.46 Aligned_cols=24 Identities=29% Similarity=0.518 Sum_probs=18.4
Q ss_pred HHHHHhcCCceEEEeeccCCCCcceE
Q 035971 87 LISEVFNGINATIVACGAKGSGKTRV 112 (614)
Q Consensus 87 lV~~vl~G~N~tI~aYGqTGSGKTyT 112 (614)
.+..++.|.+ ++..++||||||.+
T Consensus 51 ~i~~i~~~~~--~lv~~~TGsGKT~~ 74 (394)
T 1fuu_A 51 AIMPIIEGHD--VLAQAQSGTGKTGT 74 (394)
T ss_dssp HHHHHHHTCC--EEECCCSSHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCChHHHH
Confidence 4556677876 56779999999976
No 271
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=35.51 E-value=11 Score=33.75 Aligned_cols=15 Identities=40% Similarity=0.682 Sum_probs=12.9
Q ss_pred eEEEeeccCCCCcce
Q 035971 97 ATIVACGAKGSGKTR 111 (614)
Q Consensus 97 ~tI~aYGqTGSGKTy 111 (614)
..|+..|..|||||+
T Consensus 3 ~~I~i~G~~GsGKST 17 (181)
T 1ly1_A 3 KIILTIGCPGSGKST 17 (181)
T ss_dssp EEEEEECCTTSSHHH
T ss_pred eEEEEecCCCCCHHH
Confidence 358889999999995
No 272
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=35.47 E-value=8.6 Score=35.56 Aligned_cols=16 Identities=25% Similarity=0.578 Sum_probs=12.7
Q ss_pred EEEeeccCCCCcceEe
Q 035971 98 TIVACGAKGSGKTRVI 113 (614)
Q Consensus 98 tI~aYGqTGSGKTyTm 113 (614)
.+.-.|++|||||+.+
T Consensus 9 ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLV 24 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4566799999999654
No 273
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=35.25 E-value=12 Score=41.92 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=17.8
Q ss_pred HHHHhcCCceEEEeeccCCCCcceEee
Q 035971 88 ISEVFNGINATIVACGAKGSGKTRVIQ 114 (614)
Q Consensus 88 V~~vl~G~N~tI~aYGqTGSGKTyTm~ 114 (614)
|..++. +..++..|+.|||||+|+.
T Consensus 189 v~~~l~--~~~~li~GppGTGKT~~~~ 213 (624)
T 2gk6_A 189 VKTVLQ--RPLSLIQGPPGTGKTVTSA 213 (624)
T ss_dssp HHHHHT--CSEEEEECCTTSCHHHHHH
T ss_pred HHHHhc--CCCeEEECCCCCCHHHHHH
Confidence 444443 2356789999999999864
No 274
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=35.25 E-value=8.5 Score=35.40 Aligned_cols=16 Identities=38% Similarity=0.665 Sum_probs=12.8
Q ss_pred EEEeeccCCCCcceEe
Q 035971 98 TIVACGAKGSGKTRVI 113 (614)
Q Consensus 98 tI~aYGqTGSGKTyTm 113 (614)
.+.-.|++|||||..+
T Consensus 7 ~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIK 22 (180)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5667799999999654
No 275
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=34.99 E-value=18 Score=38.55 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=17.6
Q ss_pred HHHHhcCCceEEEeeccCCCCcceE
Q 035971 88 ISEVFNGINATIVACGAKGSGKTRV 112 (614)
Q Consensus 88 V~~vl~G~N~tI~aYGqTGSGKTyT 112 (614)
+..++.|.+ ++..++||||||.+
T Consensus 13 i~~~~~~~~--~l~~~~tGsGKT~~ 35 (555)
T 3tbk_A 13 ALPAKKGKN--TIICAPTGCGKTFV 35 (555)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHhCCCC--EEEEeCCCChHHHH
Confidence 445567876 56779999999976
No 276
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=34.94 E-value=18 Score=37.33 Aligned_cols=18 Identities=44% Similarity=0.560 Sum_probs=15.3
Q ss_pred ceEEEeeccCCCCcceEe
Q 035971 96 NATIVACGAKGSGKTRVI 113 (614)
Q Consensus 96 N~tI~aYGqTGSGKTyTm 113 (614)
...+...|++|+|||+++
T Consensus 129 g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457888999999999876
No 277
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=34.67 E-value=9.1 Score=40.98 Aligned_cols=23 Identities=35% Similarity=0.605 Sum_probs=19.4
Q ss_pred HhcCCceEEEeeccCCCCcceEe
Q 035971 91 VFNGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 91 vl~G~N~tI~aYGqTGSGKTyTm 113 (614)
+++|++..|...|++|+|||..|
T Consensus 26 vl~~vsf~I~lvG~sGaGKSTLl 48 (418)
T 2qag_C 26 VKRGFEFTLMVVGESGLGKSTLI 48 (418)
T ss_dssp CC-CCCEEEEEECCTTSSHHHHH
T ss_pred EecCCCEEEEEECCCCCcHHHHH
Confidence 57899999999999999999644
No 278
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=34.63 E-value=12 Score=33.78 Aligned_cols=16 Identities=25% Similarity=0.522 Sum_probs=13.4
Q ss_pred eEEEeeccCCCCcceE
Q 035971 97 ATIVACGAKGSGKTRV 112 (614)
Q Consensus 97 ~tI~aYGqTGSGKTyT 112 (614)
..|+..|.+|||||+.
T Consensus 4 ~~i~l~G~~GsGKST~ 19 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGI 19 (178)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3688999999999954
No 279
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=34.61 E-value=53 Score=25.78 Aligned_cols=37 Identities=16% Similarity=0.321 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHhhhh-cCCCHHHHHHHHHH
Q 035971 568 EKRASYILELREESPEPFKNLDDLKD-IGLSAKQIKGMMKK 607 (614)
Q Consensus 568 ~~~A~~Ii~~R~~~gg~f~~~~dL~~-~gl~~~~~~~~~~~ 607 (614)
..++++|-.+|+..| + +..||.+ +|++...|.+|.++
T Consensus 11 ~~~~~~l~~~r~~~g--l-sq~~lA~~~gis~~~i~~~e~g 48 (88)
T 2wiu_B 11 TQLANAMKLVRQQNG--W-TQSELAKKIGIKQATISNFENN 48 (88)
T ss_dssp HHHHHHHHHHHHHTT--C-CHHHHHHHHTCCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcC--C-CHHHHHHHhCCCHHHHHHHHcC
Confidence 457888999999984 4 8899999 99999999999875
No 280
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=34.60 E-value=27 Score=25.88 Aligned_cols=35 Identities=17% Similarity=0.174 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhCCCCCCCHHhhhh-cCCCHHHHHHHHHH
Q 035971 570 RASYILELREESPEPFKNLDDLKD-IGLSAKQIKGMMKK 607 (614)
Q Consensus 570 ~A~~Ii~~R~~~gg~f~~~~dL~~-~gl~~~~~~~~~~~ 607 (614)
++++|-++|+..| + +..||.+ +|++...+.+|.++
T Consensus 6 ~~~~l~~~r~~~g--~-s~~~lA~~~gis~~~i~~~e~g 41 (68)
T 2r1j_L 6 MGERIRARRKKLK--I-RQAALGKMVGVSNVAISQWERS 41 (68)
T ss_dssp HHHHHHHHHHHHT--C-CHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC--C-CHHHHHHHHCCCHHHHHHHHcC
Confidence 4667778888773 3 7888888 88888888888764
No 281
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=34.38 E-value=8.8 Score=38.86 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=16.2
Q ss_pred HhcCCceEEEeeccCCCCcceEe
Q 035971 91 VFNGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 91 vl~G~N~tI~aYGqTGSGKTyTm 113 (614)
+++|++..|...|++|+|||..|
T Consensus 13 ~l~~~~~~I~lvG~nG~GKSTLl 35 (301)
T 2qnr_A 13 VKKGFEFTLMVVGESGLGKSTLI 35 (301)
T ss_dssp -----CEEEEEEEETTSSHHHHH
T ss_pred EEcCCCEEEEEECCCCCCHHHHH
Confidence 67899999999999999999654
No 282
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=34.36 E-value=10 Score=35.82 Aligned_cols=17 Identities=41% Similarity=0.509 Sum_probs=13.6
Q ss_pred eEEEeeccCCCCcceEe
Q 035971 97 ATIVACGAKGSGKTRVI 113 (614)
Q Consensus 97 ~tI~aYGqTGSGKTyTm 113 (614)
..|...|++|||||.++
T Consensus 9 ~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred cEEEEECcCCCCHHHHH
Confidence 45677899999999654
No 283
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=34.31 E-value=18 Score=39.58 Aligned_cols=26 Identities=15% Similarity=0.286 Sum_probs=18.5
Q ss_pred HHHHHHhcCCceEEEeeccCCCCcceEe
Q 035971 86 PLISEVFNGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 86 plV~~vl~G~N~tI~aYGqTGSGKTyTm 113 (614)
.++..+..|. .|+-||++|+|||+..
T Consensus 33 ~l~~al~~~~--~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 33 LCLLAALSGE--SVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHTC--EEEEECCSSSSHHHHH
T ss_pred HHHHHHhcCC--eeEeecCchHHHHHHH
Confidence 3444445554 6788999999999764
No 284
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=34.26 E-value=22 Score=39.09 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=19.8
Q ss_pred HHHHHhcCCceEEEeeccCCCCcceE
Q 035971 87 LISEVFNGINATIVACGAKGSGKTRV 112 (614)
Q Consensus 87 lV~~vl~G~N~tI~aYGqTGSGKTyT 112 (614)
++..++.|.+.-+++.++||||||.+
T Consensus 51 ~i~~il~~~~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 51 TIKPILSSEDHDVIARAKTGTGKTFA 76 (579)
T ss_dssp HHHHHHCSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHHccCCCeEEEEcCCCcHHHHH
Confidence 45566655556678899999999975
No 285
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=34.15 E-value=11 Score=38.79 Aligned_cols=17 Identities=41% Similarity=0.659 Sum_probs=14.2
Q ss_pred ceEEEeeccCCCCcceE
Q 035971 96 NATIVACGAKGSGKTRV 112 (614)
Q Consensus 96 N~tI~aYGqTGSGKTyT 112 (614)
...|+-||++|+|||+.
T Consensus 51 ~~~vll~GppGtGKT~l 67 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLL 67 (363)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 35688899999999965
No 286
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=33.92 E-value=12 Score=33.95 Aligned_cols=14 Identities=43% Similarity=0.593 Sum_probs=12.4
Q ss_pred EEEeeccCCCCcce
Q 035971 98 TIVACGAKGSGKTR 111 (614)
Q Consensus 98 tI~aYGqTGSGKTy 111 (614)
.|+..|.+|||||+
T Consensus 7 ~i~l~G~~GsGKst 20 (185)
T 3trf_A 7 NIYLIGLMGAGKTS 20 (185)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 57889999999995
No 287
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=33.79 E-value=19 Score=40.24 Aligned_cols=22 Identities=36% Similarity=0.629 Sum_probs=17.1
Q ss_pred HHHhcCCceEEEeeccCCCCcceE
Q 035971 89 SEVFNGINATIVACGAKGSGKTRV 112 (614)
Q Consensus 89 ~~vl~G~N~tI~aYGqTGSGKTyT 112 (614)
..++.|.| ++..++||||||..
T Consensus 23 ~~~l~g~~--~iv~~~TGsGKTl~ 44 (696)
T 2ykg_A 23 LPAMKGKN--TIICAPTGCGKTFV 44 (696)
T ss_dssp HHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHcCCC--EEEEcCCCchHHHH
Confidence 45567877 56788999999974
No 288
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=33.60 E-value=18 Score=40.32 Aligned_cols=25 Identities=40% Similarity=0.695 Sum_probs=18.9
Q ss_pred HHHHHhcCCceEEEeeccCCCCcceEe
Q 035971 87 LISEVFNGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 87 lV~~vl~G~N~tI~aYGqTGSGKTyTm 113 (614)
+++.+++|.+ ++..++||+|||.+.
T Consensus 15 ~i~~il~g~~--~ll~~~TGsGKTl~~ 39 (699)
T 4gl2_A 15 VAQPALEGKN--IIICLPTGCGKTRVA 39 (699)
T ss_dssp HHHHHHSSCC--EEECCCTTSCHHHHH
T ss_pred HHHHHHhCCC--EEEEcCCCCcHHHHH
Confidence 3445667876 577899999999764
No 289
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=33.56 E-value=19 Score=41.14 Aligned_cols=16 Identities=31% Similarity=0.586 Sum_probs=14.0
Q ss_pred EEEeeccCCCCcceEe
Q 035971 98 TIVACGAKGSGKTRVI 113 (614)
Q Consensus 98 tI~aYGqTGSGKTyTm 113 (614)
.++-||++|+|||++.
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 7999999999999653
No 290
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=33.32 E-value=29 Score=26.46 Aligned_cols=35 Identities=17% Similarity=0.174 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhCCCCCCCHHhhhh-cCCCHHHHHHHHHH
Q 035971 570 RASYILELREESPEPFKNLDDLKD-IGLSAKQIKGMMKK 607 (614)
Q Consensus 570 ~A~~Ii~~R~~~gg~f~~~~dL~~-~gl~~~~~~~~~~~ 607 (614)
++++|-++|+..| + +..+|.+ +|++...+.+|.++
T Consensus 6 ~~~~l~~~r~~~g--l-s~~~lA~~~gis~~~i~~~e~g 41 (76)
T 1adr_A 6 MGERIRARRKKLK--I-RQAALGKMVGVSNVAISQWERS 41 (76)
T ss_dssp HHHHHHHHHHHHT--C-CHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC--C-CHHHHHHHHCcCHHHHHHHHcC
Confidence 4667777787773 3 7788888 88888888888664
No 291
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=33.26 E-value=14 Score=36.83 Aligned_cols=17 Identities=18% Similarity=0.387 Sum_probs=14.7
Q ss_pred eEEEeeccCCCCcceEe
Q 035971 97 ATIVACGAKGSGKTRVI 113 (614)
Q Consensus 97 ~tI~aYGqTGSGKTyTm 113 (614)
..++.+|+.|+|||..+
T Consensus 32 ~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcCCHHHHH
Confidence 67889999999999654
No 292
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=32.90 E-value=20 Score=40.82 Aligned_cols=31 Identities=19% Similarity=0.304 Sum_probs=22.0
Q ss_pred hHHHHHHHhcCCceEEEeeccCCCCcceEee
Q 035971 84 VKPLISEVFNGINATIVACGAKGSGKTRVIQ 114 (614)
Q Consensus 84 v~plV~~vl~G~N~tI~aYGqTGSGKTyTm~ 114 (614)
+..+++.+.......++-||++|+|||+.+.
T Consensus 195 i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 195 LERAIQVLCRRRKNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSSHHHHHH
T ss_pred HHHHHHHHhccCCCCeEEEcCCCCCHHHHHH
Confidence 3345555555566678899999999997763
No 293
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=32.89 E-value=9.1 Score=40.92 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=18.5
Q ss_pred HHHHhcCCceEEEeeccCCCCcceE
Q 035971 88 ISEVFNGINATIVACGAKGSGKTRV 112 (614)
Q Consensus 88 V~~vl~G~N~tI~aYGqTGSGKTyT 112 (614)
+..+++|.+. ++..|+||||||..
T Consensus 12 i~~~l~~~~~-~lv~a~TGsGKT~~ 35 (451)
T 2jlq_A 12 DEDIFRKKRL-TIMDLHPGAGKTKR 35 (451)
T ss_dssp CGGGGSTTCE-EEECCCTTSSCCTT
T ss_pred HHHHHhcCCe-EEEECCCCCCHhhH
Confidence 4566778765 56779999999975
No 294
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=32.88 E-value=36 Score=31.25 Aligned_cols=42 Identities=26% Similarity=0.374 Sum_probs=28.5
Q ss_pred HhhccCCCCCHHHHHHHHHHHHhCCCCCCCHHhhhhcCCCHHHHHHHHH
Q 035971 558 EDLKRLKGIGEKRASYILELREESPEPFKNLDDLKDIGLSAKQIKGMMK 606 (614)
Q Consensus 558 ~~L~~l~gig~~~A~~Ii~~R~~~gg~f~~~~dL~~~gl~~~~~~~~~~ 606 (614)
-.|..|+|||...|..|++.=.-. |-+-+-| |+.++++++..
T Consensus 23 ~aLt~I~GIG~~~A~~I~~~~gid--~~~r~g~-----Lt~~ei~~i~~ 64 (148)
T 3j20_O 23 WALTAIKGIGINFATMVCRVAGLD--PFMKAGY-----LTDEQVKKIEE 64 (148)
T ss_dssp HHHHHSTTCCHHHHHHHHHHHTCC--SSSCTTB-----CCHHHHHHHHH
T ss_pred hhhhhccCcCHHHHHHHHHHhCCC--CCceecc-----CCHHHHHHHHH
Confidence 468899999999999999765433 3333333 46666666543
No 295
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=32.74 E-value=20 Score=40.91 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=19.3
Q ss_pred cCCceEEEeeccCCCCcceEe
Q 035971 93 NGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 93 ~G~N~tI~aYGqTGSGKTyTm 113 (614)
++.|.||+.-|.+|||||.+.
T Consensus 91 ~~~nQsIiisGESGAGKTe~t 111 (697)
T 1lkx_A 91 SQENQCVIISGESGAGKTEAS 111 (697)
T ss_dssp HCCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEecCCCCCCchhhH
Confidence 699999999999999999764
No 296
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=32.72 E-value=31 Score=31.92 Aligned_cols=42 Identities=21% Similarity=0.270 Sum_probs=28.6
Q ss_pred HhhccCCCCCHHHHHHHHHHHHhCCCCCCCHHhhhhcCCCHHHHHHHHH
Q 035971 558 EDLKRLKGIGEKRASYILELREESPEPFKNLDDLKDIGLSAKQIKGMMK 606 (614)
Q Consensus 558 ~~L~~l~gig~~~A~~Ii~~R~~~gg~f~~~~dL~~~gl~~~~~~~~~~ 606 (614)
-.|..|+|||...|..|++.=.-. |-+-+-| |+.+++.++..
T Consensus 30 ~aLt~I~GIG~~~A~~I~~~~gid--~~~r~~~-----Lt~~ei~~l~~ 71 (155)
T 2xzm_M 30 IALTGIRGIGRRFAYIICKVLKID--PNARAGL-----LTEDQCNKITD 71 (155)
T ss_dssp HHHTTSTTCCHHHHHHHHHHTTCC--SSSCSSC-----SCHHHHHHHHH
T ss_pred EeeecccccCHHHHHHHHHHcCCC--ccccccc-----CCHHHHHHHHH
Confidence 468899999999999999755333 2322222 57777776643
No 297
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=32.67 E-value=9.7 Score=34.81 Aligned_cols=17 Identities=29% Similarity=0.589 Sum_probs=13.7
Q ss_pred eEEEeeccCCCCcceEe
Q 035971 97 ATIVACGAKGSGKTRVI 113 (614)
Q Consensus 97 ~tI~aYGqTGSGKTyTm 113 (614)
..|...|+.|||||+.+
T Consensus 10 ~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIA 26 (191)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46778899999999643
No 298
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=32.62 E-value=17 Score=34.37 Aligned_cols=26 Identities=31% Similarity=0.650 Sum_probs=18.3
Q ss_pred HHHHhcC-C--ceEEEeeccCCCCcceEe
Q 035971 88 ISEVFNG-I--NATIVACGAKGSGKTRVI 113 (614)
Q Consensus 88 V~~vl~G-~--N~tI~aYGqTGSGKTyTm 113 (614)
++.++.| . ...++-+|++|+|||..+
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~ 40 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFS 40 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHH
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHH
Confidence 4556543 2 346788999999999663
No 299
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=32.54 E-value=20 Score=35.83 Aligned_cols=25 Identities=40% Similarity=0.426 Sum_probs=17.5
Q ss_pred HHHHhcCCceEEEeeccCCCCcceEe
Q 035971 88 ISEVFNGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 88 V~~vl~G~N~tI~aYGqTGSGKTyTm 113 (614)
+..+++|.. .++..++||||||.+.
T Consensus 37 i~~~~~~~~-~~l~~~~TGsGKT~~~ 61 (367)
T 1hv8_A 37 IPLFLNDEY-NIVAQARTGSGKTASF 61 (367)
T ss_dssp HHHHHHTCS-EEEEECCSSSSHHHHH
T ss_pred HHHHhCCCC-CEEEECCCCChHHHHH
Confidence 445566632 3567899999999764
No 300
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=32.19 E-value=13 Score=33.84 Aligned_cols=15 Identities=40% Similarity=0.682 Sum_probs=12.9
Q ss_pred EEEeeccCCCCcceE
Q 035971 98 TIVACGAKGSGKTRV 112 (614)
Q Consensus 98 tI~aYGqTGSGKTyT 112 (614)
.|+..|.+|||||+.
T Consensus 13 ~i~i~G~~GsGKst~ 27 (180)
T 3iij_A 13 NILLTGTPGVGKTTL 27 (180)
T ss_dssp CEEEECSTTSSHHHH
T ss_pred eEEEEeCCCCCHHHH
Confidence 478899999999964
No 301
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=32.08 E-value=9.6 Score=35.19 Aligned_cols=15 Identities=40% Similarity=0.833 Sum_probs=12.2
Q ss_pred EEeeccCCCCcceEe
Q 035971 99 IVACGAKGSGKTRVI 113 (614)
Q Consensus 99 I~aYGqTGSGKTyTm 113 (614)
+.-.|++|||||+++
T Consensus 4 i~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 4 IVISGPSGTGKSTLL 18 (186)
T ss_dssp EEEESSSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999765
No 302
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=31.88 E-value=8 Score=36.20 Aligned_cols=17 Identities=35% Similarity=0.302 Sum_probs=14.2
Q ss_pred EEEeeccCCCCcceEee
Q 035971 98 TIVACGAKGSGKTRVIQ 114 (614)
Q Consensus 98 tI~aYGqTGSGKTyTm~ 114 (614)
.++-||+.|+|||+.+.
T Consensus 5 i~vi~G~~gsGKTT~ll 21 (184)
T 2orw_A 5 LTVITGPMYSGKTTELL 21 (184)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56789999999997764
No 303
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=31.83 E-value=9.7 Score=35.76 Aligned_cols=16 Identities=31% Similarity=0.748 Sum_probs=13.1
Q ss_pred EEEeeccCCCCcceEe
Q 035971 98 TIVACGAKGSGKTRVI 113 (614)
Q Consensus 98 tI~aYGqTGSGKTyTm 113 (614)
.+.-.|++|||||.++
T Consensus 6 ~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLL 21 (198)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4567899999999765
No 304
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=31.82 E-value=46 Score=25.83 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhCCCCCCCHHhhhh-cCCCHHHHHHHHHH
Q 035971 569 KRASYILELREESPEPFKNLDDLKD-IGLSAKQIKGMMKK 607 (614)
Q Consensus 569 ~~A~~Ii~~R~~~gg~f~~~~dL~~-~gl~~~~~~~~~~~ 607 (614)
.++++|-.+|+.. | + +..||.+ +|++...+.+|.++
T Consensus 10 ~~~~~l~~~r~~~-g-l-sq~~lA~~~gis~~~i~~~e~g 46 (84)
T 2ef8_A 10 CLVQLLTKLRKEA-S-L-SQSELAIFLGLSQSDISKIESF 46 (84)
T ss_dssp HHHHHHHHHHHHT-T-C-CHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHc-C-C-CHHHHHHHhCCCHHHHHHHHcC
Confidence 4677888888888 3 3 7888888 89998888888764
No 305
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=31.46 E-value=24 Score=40.16 Aligned_cols=17 Identities=35% Similarity=0.610 Sum_probs=14.7
Q ss_pred eEEEeeccCCCCcceEe
Q 035971 97 ATIVACGAKGSGKTRVI 113 (614)
Q Consensus 97 ~tI~aYGqTGSGKTyTm 113 (614)
+.++-||++|+|||++.
T Consensus 489 ~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 57999999999999654
No 306
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=31.41 E-value=20 Score=37.52 Aligned_cols=17 Identities=41% Similarity=0.698 Sum_probs=14.8
Q ss_pred eEEEeeccCCCCcceEe
Q 035971 97 ATIVACGAKGSGKTRVI 113 (614)
Q Consensus 97 ~tI~aYGqTGSGKTyTm 113 (614)
..+...|++|||||+++
T Consensus 158 ~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 46888999999999876
No 307
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=31.19 E-value=10 Score=36.98 Aligned_cols=19 Identities=21% Similarity=0.079 Sum_probs=15.3
Q ss_pred ceEEEeeccCCCCcceEee
Q 035971 96 NATIVACGAKGSGKTRVIQ 114 (614)
Q Consensus 96 N~tI~aYGqTGSGKTyTm~ 114 (614)
...++-||+.|+|||..++
T Consensus 12 G~i~litG~mGsGKTT~ll 30 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELI 30 (223)
T ss_dssp CEEEEEECSTTSCHHHHHH
T ss_pred cEEEEEECCCCCcHHHHHH
Confidence 3567889999999997654
No 308
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=31.15 E-value=20 Score=39.03 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=15.2
Q ss_pred ceEEEeeccCCCCcceEe
Q 035971 96 NATIVACGAKGSGKTRVI 113 (614)
Q Consensus 96 N~tI~aYGqTGSGKTyTm 113 (614)
...++-||++|+|||++.
T Consensus 77 ~~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 357899999999999764
No 309
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=31.06 E-value=11 Score=37.55 Aligned_cols=19 Identities=26% Similarity=0.599 Sum_probs=15.3
Q ss_pred CceEEEeeccCCCCcceEe
Q 035971 95 INATIVACGAKGSGKTRVI 113 (614)
Q Consensus 95 ~N~tI~aYGqTGSGKTyTm 113 (614)
|+-++...|++|+|||..|
T Consensus 1 f~f~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 1 FDFNIMVVGQSGLGKSTLV 19 (270)
T ss_dssp CEEEEEEEESSSSSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHH
Confidence 3457888999999999655
No 310
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=30.93 E-value=23 Score=40.99 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=19.3
Q ss_pred cCCceEEEeeccCCCCcceEe
Q 035971 93 NGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 93 ~G~N~tI~aYGqTGSGKTyTm 113 (614)
++.|.||+.-|.+|+|||.+.
T Consensus 169 ~~~nQsIiisGESGAGKTe~t 189 (770)
T 1w9i_A 169 DRQNQSLLITGESGAGKTENT 189 (770)
T ss_dssp HCCCEEEEEECSTTSSHHHHH
T ss_pred hcCCcEEEEecCCCCcchHHH
Confidence 699999999999999999764
No 311
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=30.70 E-value=12 Score=41.63 Aligned_cols=20 Identities=35% Similarity=0.561 Sum_probs=16.5
Q ss_pred CceEEEeeccCCCCcceEee
Q 035971 95 INATIVACGAKGSGKTRVIQ 114 (614)
Q Consensus 95 ~N~tI~aYGqTGSGKTyTm~ 114 (614)
.+..++..|..|||||+|+.
T Consensus 21 ~~~~~lV~a~aGsGKT~~l~ 40 (647)
T 3lfu_A 21 PRSNLLVLAGAGSGKTRVLV 40 (647)
T ss_dssp CSSCEEEEECTTSCHHHHHH
T ss_pred CCCCEEEEECCCCCHHHHHH
Confidence 35567888999999999974
No 312
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=30.60 E-value=10 Score=35.21 Aligned_cols=15 Identities=40% Similarity=0.764 Sum_probs=12.4
Q ss_pred EEeeccCCCCcceEe
Q 035971 99 IVACGAKGSGKTRVI 113 (614)
Q Consensus 99 I~aYGqTGSGKTyTm 113 (614)
+.-.|+.|||||+.+
T Consensus 3 i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 3 IIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456899999999765
No 313
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=30.52 E-value=23 Score=41.07 Aligned_cols=17 Identities=29% Similarity=0.536 Sum_probs=14.8
Q ss_pred eEEEeeccCCCCcceEe
Q 035971 97 ATIVACGAKGSGKTRVI 113 (614)
Q Consensus 97 ~tI~aYGqTGSGKTyTm 113 (614)
..++-||++|+|||++.
T Consensus 589 ~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEEBSCSSSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 68999999999999653
No 314
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=30.46 E-value=23 Score=41.00 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=19.1
Q ss_pred cCCceEEEeeccCCCCcceEe
Q 035971 93 NGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 93 ~G~N~tI~aYGqTGSGKTyTm 113 (614)
++.|.||+.-|.+|||||.+.
T Consensus 137 ~~~nQsIiiSGESGAGKTe~t 157 (784)
T 2v26_A 137 LKLSQSIIVSGESGAGKTENT 157 (784)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEcCCCCCCceehH
Confidence 699999999999999999763
No 315
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=30.04 E-value=71 Score=25.78 Aligned_cols=36 Identities=8% Similarity=0.083 Sum_probs=30.0
Q ss_pred HHHHHHHHhCCCCCCCHHhhhh-cCCCHHHHHHHHHHHh
Q 035971 572 SYILELREESPEPFKNLDDLKD-IGLSAKQIKGMMKKEM 609 (614)
Q Consensus 572 ~~Ii~~R~~~gg~f~~~~dL~~-~gl~~~~~~~~~~~~~ 609 (614)
+.|+++=+++ | +.++.||.+ .|+|+.+|++.+..-.
T Consensus 5 ~~Il~~L~~~-g-~vsv~eLa~~l~VS~~TIRrdL~~Le 41 (78)
T 1xn7_A 5 IQVRDLLALR-G-RMEAAQISQTLNTPQPMINAMLQQLE 41 (78)
T ss_dssp HHHHHHHHHS-C-SBCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-C-CCcHHHHHHHHCcCHHHHHHHHHHHH
Confidence 5678877777 4 789999999 9999999999988765
No 316
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=29.98 E-value=44 Score=27.04 Aligned_cols=37 Identities=14% Similarity=0.089 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHhhhh-cCCCHHHHHHHHHH
Q 035971 568 EKRASYILELREESPEPFKNLDDLKD-IGLSAKQIKGMMKK 607 (614)
Q Consensus 568 ~~~A~~Ii~~R~~~gg~f~~~~dL~~-~gl~~~~~~~~~~~ 607 (614)
..++++|-++|+..| + +..+|.+ +|++...|.+|.++
T Consensus 8 ~~~~~~lk~~r~~~g--l-sq~~lA~~~gis~~~is~~e~G 45 (94)
T 2kpj_A 8 AIFSENLNSYIAKSE--K-TQLEIAKSIGVSPQTFNTWCKG 45 (94)
T ss_dssp HHHHHHHHHHHTTSS--S-CHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcC--C-CHHHHHHHHCcCHHHHHHHHhC
Confidence 356788888888883 3 7888988 89999998888764
No 317
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=29.95 E-value=12 Score=34.52 Aligned_cols=16 Identities=44% Similarity=0.565 Sum_probs=12.9
Q ss_pred EEEeeccCCCCcceEe
Q 035971 98 TIVACGAKGSGKTRVI 113 (614)
Q Consensus 98 tI~aYGqTGSGKTyTm 113 (614)
.|.-.|++|||||+.+
T Consensus 8 ~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVR 23 (207)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5677899999999543
No 318
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=29.81 E-value=16 Score=32.57 Aligned_cols=28 Identities=21% Similarity=0.532 Sum_probs=20.5
Q ss_pred HHHHHHhc-CCceEEEeeccCCCCcceEe
Q 035971 86 PLISEVFN-GINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 86 plV~~vl~-G~N~tI~aYGqTGSGKTyTm 113 (614)
.+++.++. ....-|...|..|+|||..+
T Consensus 7 ~~~~~~~~~~~~~~i~v~G~~~~GKssli 35 (183)
T 1moz_A 7 SMFDKLWGSNKELRILILGLDGAGKTTIL 35 (183)
T ss_dssp HHHGGGTTCSSCEEEEEEEETTSSHHHHH
T ss_pred HHHHHhcCCCCccEEEEECCCCCCHHHHH
Confidence 34445555 56678999999999999543
No 319
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=29.79 E-value=23 Score=39.96 Aligned_cols=41 Identities=22% Similarity=0.284 Sum_probs=29.2
Q ss_pred ecCCCChHHHHhhhhHHHHHHHhcCCceEEEeeccCCCCcceEeec
Q 035971 70 YEQNEGNGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQG 115 (614)
Q Consensus 70 F~~~asQ~eVf~~~v~plV~~vl~G~N~tI~aYGqTGSGKTyTm~G 115 (614)
|.|...|..-++. +++.+-.|... ....|.||||||++|..
T Consensus 7 ~~~~~~q~~ai~~----l~~~~~~~~~~-~~l~g~tgs~kt~~~a~ 47 (664)
T 1c4o_A 7 PSPKGDQPKAIAG----LVEALRDGERF-VTLLGATGTGKTVTMAK 47 (664)
T ss_dssp CCCCTTHHHHHHH----HHHHHHTTCSE-EEEEECTTSCHHHHHHH
T ss_pred CCCCCCChHHHHH----HHHHHhcCCCc-EEEEcCCCcHHHHHHHH
Confidence 3778888777653 55666667543 34579999999999964
No 320
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=29.42 E-value=27 Score=27.99 Aligned_cols=39 Identities=8% Similarity=0.216 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHhhhh-cCCCHHHHHHHHHH
Q 035971 566 IGEKRASYILELREESPEPFKNLDDLKD-IGLSAKQIKGMMKK 607 (614)
Q Consensus 566 ig~~~A~~Ii~~R~~~gg~f~~~~dL~~-~gl~~~~~~~~~~~ 607 (614)
++..+++.|-++|+..| + +..||.+ +|++...+.+|.++
T Consensus 14 ~~~~l~~~l~~~R~~~g--l-sq~~lA~~~gis~~~is~~e~g 53 (92)
T 1lmb_3 14 DARRLKAIYEKKKNELG--L-SQESVADKMGMGQSGVGALFNG 53 (92)
T ss_dssp HHHHHHHHHHHHHHHHT--C-CHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcC--C-CHHHHHHHHCcCHHHHHHHHcC
Confidence 46677788888888883 3 7888888 89988888888764
No 321
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=29.24 E-value=15 Score=33.15 Aligned_cols=16 Identities=31% Similarity=0.530 Sum_probs=13.3
Q ss_pred eEEEeeccCCCCcceE
Q 035971 97 ATIVACGAKGSGKTRV 112 (614)
Q Consensus 97 ~tI~aYGqTGSGKTyT 112 (614)
..|+..|..|||||+.
T Consensus 4 ~~I~i~G~~GsGKsT~ 19 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTS 19 (192)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3588899999999953
No 322
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=29.18 E-value=10 Score=39.44 Aligned_cols=17 Identities=18% Similarity=0.237 Sum_probs=13.6
Q ss_pred eEEEeeccCCCCcceEe
Q 035971 97 ATIVACGAKGSGKTRVI 113 (614)
Q Consensus 97 ~tI~aYGqTGSGKTyTm 113 (614)
.-++..|++|||||+++
T Consensus 36 ~~~~i~G~~G~GKs~~~ 52 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTA 52 (392)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CceEEEcCCCCCHHHHH
Confidence 34567799999999876
No 323
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=29.11 E-value=12 Score=34.18 Aligned_cols=16 Identities=25% Similarity=0.457 Sum_probs=13.0
Q ss_pred EEEeeccCCCCcceEe
Q 035971 98 TIVACGAKGSGKTRVI 113 (614)
Q Consensus 98 tI~aYGqTGSGKTyTm 113 (614)
.+.-.|+.|||||+++
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4667899999999654
No 324
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=29.05 E-value=59 Score=25.94 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHhhhh-cCCCHHHHHHHHHH
Q 035971 568 EKRASYILELREESPEPFKNLDDLKD-IGLSAKQIKGMMKK 607 (614)
Q Consensus 568 ~~~A~~Ii~~R~~~gg~f~~~~dL~~-~gl~~~~~~~~~~~ 607 (614)
..++++|-++|+.. | + +..||.+ +|++...|.+|.+.
T Consensus 12 ~~~~~~l~~~r~~~-g-l-sq~~lA~~~gis~~~is~~e~g 49 (91)
T 1x57_A 12 LEVGKVIQQGRQSK-G-L-TQKDLATKINEKPQVIADYESG 49 (91)
T ss_dssp CHHHHHHHHHHHTT-T-C-CHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc-C-C-CHHHHHHHHCcCHHHHHHHHcC
Confidence 45788999999988 3 3 8899999 99999999998774
No 325
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=29.04 E-value=12 Score=35.43 Aligned_cols=17 Identities=35% Similarity=0.647 Sum_probs=13.5
Q ss_pred eEEEeeccCCCCcceEe
Q 035971 97 ATIVACGAKGSGKTRVI 113 (614)
Q Consensus 97 ~tI~aYGqTGSGKTyTm 113 (614)
..+.-.|++|||||+.+
T Consensus 31 ~~~~l~GpnGsGKSTLl 47 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFA 47 (251)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEEeCCCCCHHHHH
Confidence 34666899999999765
No 326
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=28.92 E-value=18 Score=37.26 Aligned_cols=23 Identities=17% Similarity=0.167 Sum_probs=17.1
Q ss_pred HHHHhcCCceEEEeeccCCCCcceEe
Q 035971 88 ISEVFNGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 88 V~~vl~G~N~tI~aYGqTGSGKTyTm 113 (614)
+..+++| .++..++||+|||.+.
T Consensus 18 i~~~~~~---~~ll~~~tG~GKT~~~ 40 (494)
T 1wp9_A 18 YAKCKET---NCLIVLPTGLGKTLIA 40 (494)
T ss_dssp HHHGGGS---CEEEECCTTSCHHHHH
T ss_pred HHHHhhC---CEEEEcCCCCCHHHHH
Confidence 4456677 4566799999999775
No 327
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=28.85 E-value=14 Score=37.72 Aligned_cols=17 Identities=35% Similarity=0.659 Sum_probs=14.1
Q ss_pred eEEEeeccCCCCcceEe
Q 035971 97 ATIVACGAKGSGKTRVI 113 (614)
Q Consensus 97 ~tI~aYGqTGSGKTyTm 113 (614)
..|.-.|++|||||+++
T Consensus 103 ~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 46667799999999876
No 328
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=28.81 E-value=11 Score=39.71 Aligned_cols=18 Identities=28% Similarity=0.597 Sum_probs=15.1
Q ss_pred ceEEEeeccCCCCcceEe
Q 035971 96 NATIVACGAKGSGKTRVI 113 (614)
Q Consensus 96 N~tI~aYGqTGSGKTyTm 113 (614)
+.-++.+|+||||||.++
T Consensus 53 ~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGCEEEEECTTSSHHHHH
T ss_pred cceEEEECCCCCCHHHHH
Confidence 456788999999999875
No 329
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=28.81 E-value=17 Score=33.77 Aligned_cols=15 Identities=40% Similarity=0.596 Sum_probs=12.9
Q ss_pred EEEeeccCCCCcceE
Q 035971 98 TIVACGAKGSGKTRV 112 (614)
Q Consensus 98 tI~aYGqTGSGKTyT 112 (614)
.|+..|++|||||+.
T Consensus 27 ~i~l~G~~GsGKsTl 41 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTL 41 (199)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEEcCCCCCHHHH
Confidence 678899999999954
No 330
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=28.78 E-value=17 Score=32.22 Aligned_cols=15 Identities=27% Similarity=0.220 Sum_probs=12.5
Q ss_pred EEEeeccCCCCcceE
Q 035971 98 TIVACGAKGSGKTRV 112 (614)
Q Consensus 98 tI~aYGqTGSGKTyT 112 (614)
.|+..|..|||||+.
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (173)
T 3kb2_A 3 LIILEGPDCCFKSTV 17 (173)
T ss_dssp EEEEECSSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 477889999999953
No 331
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=28.71 E-value=16 Score=32.69 Aligned_cols=15 Identities=33% Similarity=0.685 Sum_probs=12.6
Q ss_pred EEEeeccCCCCcceE
Q 035971 98 TIVACGAKGSGKTRV 112 (614)
Q Consensus 98 tI~aYGqTGSGKTyT 112 (614)
.|.-.|+.|||||+.
T Consensus 6 ~i~l~G~~GsGKSTl 20 (173)
T 1kag_A 6 NIFLVGPMGAGKSTI 20 (173)
T ss_dssp CEEEECCTTSCHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 477899999999954
No 332
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=28.70 E-value=56 Score=25.40 Aligned_cols=37 Identities=24% Similarity=0.304 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHhhhh-cCCCHHHHHHHHHH
Q 035971 568 EKRASYILELREESPEPFKNLDDLKD-IGLSAKQIKGMMKK 607 (614)
Q Consensus 568 ~~~A~~Ii~~R~~~gg~f~~~~dL~~-~gl~~~~~~~~~~~ 607 (614)
..++++|-++|+.. | + +..+|.+ +|++...+.+|.++
T Consensus 10 ~~~g~~lk~~R~~~-g-l-sq~~lA~~~gis~~~i~~~e~g 47 (82)
T 3s8q_A 10 SKVSFVIKKIRLEK-G-M-TQEDLAYKSNLDRTYISGIERN 47 (82)
T ss_dssp HHHHHHHHHHHHHT-T-C-CHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHc-C-C-CHHHHHHHhCcCHHHHHHHHCC
Confidence 35677888888887 3 3 7888888 88888888887654
No 333
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=28.69 E-value=24 Score=41.12 Aligned_cols=21 Identities=29% Similarity=0.435 Sum_probs=19.3
Q ss_pred cCCceEEEeeccCCCCcceEe
Q 035971 93 NGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 93 ~G~N~tI~aYGqTGSGKTyTm 113 (614)
++.|.||+.-|.+|||||.+.
T Consensus 166 ~~~nQsIiiSGESGAGKTe~t 186 (837)
T 1kk8_A 166 DRENQSCLITGESGAGKTENT 186 (837)
T ss_dssp HTSEEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEeCCCCCCchhhH
Confidence 699999999999999999774
No 334
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=28.61 E-value=26 Score=40.64 Aligned_cols=20 Identities=35% Similarity=0.586 Sum_probs=18.8
Q ss_pred cCCceEEEeeccCCCCcceE
Q 035971 93 NGINATIVACGAKGSGKTRV 112 (614)
Q Consensus 93 ~G~N~tI~aYGqTGSGKTyT 112 (614)
++.|.||+.-|.+|||||.+
T Consensus 153 ~~~nQsIiisGESGAGKTe~ 172 (795)
T 1w7j_A 153 DERNQSIIVSGESGAGKTVS 172 (795)
T ss_dssp HTCCEEEEEECSTTSSHHHH
T ss_pred cCCCeEEEEeCCCCCCcchH
Confidence 59999999999999999976
No 335
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=28.39 E-value=15 Score=34.99 Aligned_cols=16 Identities=38% Similarity=0.557 Sum_probs=8.9
Q ss_pred EEEeeccCCCCcceEe
Q 035971 98 TIVACGAKGSGKTRVI 113 (614)
Q Consensus 98 tI~aYGqTGSGKTyTm 113 (614)
.+.-.|++|||||.++
T Consensus 29 ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EEEEECSCC----CHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999664
No 336
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=28.35 E-value=25 Score=41.90 Aligned_cols=20 Identities=30% Similarity=0.544 Sum_probs=18.9
Q ss_pred cCCceEEEeeccCCCCcceE
Q 035971 93 NGINATIVACGAKGSGKTRV 112 (614)
Q Consensus 93 ~G~N~tI~aYGqTGSGKTyT 112 (614)
++.|.||+.-|.+|||||.+
T Consensus 169 ~~~~QsIiisGESGAGKTe~ 188 (1010)
T 1g8x_A 169 DRQNQSLLITGESGAGKTEN 188 (1010)
T ss_dssp HTCCEEEEEEESTTSSHHHH
T ss_pred cCCCeEEEEeCCCCCCcchH
Confidence 69999999999999999976
No 337
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=28.27 E-value=27 Score=40.47 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=19.3
Q ss_pred cCCceEEEeeccCCCCcceEe
Q 035971 93 NGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 93 ~G~N~tI~aYGqTGSGKTyTm 113 (614)
++.|.||+.-|.+|+|||.+.
T Consensus 168 ~~~nQsIiiSGESGAGKTe~t 188 (783)
T 4db1_A 168 DRENQSILITGESGAGKTVNT 188 (783)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred hCCCceEEEeCCCCCCCchHH
Confidence 699999999999999999764
No 338
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=27.96 E-value=13 Score=34.81 Aligned_cols=16 Identities=31% Similarity=0.615 Sum_probs=12.6
Q ss_pred EEEeeccCCCCcceEe
Q 035971 98 TIVACGAKGSGKTRVI 113 (614)
Q Consensus 98 tI~aYGqTGSGKTyTm 113 (614)
.+.-.|++|||||.++
T Consensus 22 i~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVV 37 (207)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999665
No 339
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=27.88 E-value=26 Score=42.35 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=19.2
Q ss_pred cCCceEEEeeccCCCCcceEe
Q 035971 93 NGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 93 ~G~N~tI~aYGqTGSGKTyTm 113 (614)
++.|.||+.-|.+|||||.+.
T Consensus 166 ~~~~Q~i~isGeSGaGKTe~~ 186 (1184)
T 1i84_S 166 DREDQSILCTGESGAGKTENT 186 (1184)
T ss_dssp HTCCEEEECCCSTTSSTTHHH
T ss_pred cCCCcEEEEecCCCCCccHHH
Confidence 699999999999999999763
No 340
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=27.86 E-value=58 Score=25.73 Aligned_cols=37 Identities=11% Similarity=0.211 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhCCCCCCCHHhhhh-cCCCHHHHHHHHHHH
Q 035971 569 KRASYILELREESPEPFKNLDDLKD-IGLSAKQIKGMMKKE 608 (614)
Q Consensus 569 ~~A~~Ii~~R~~~gg~f~~~~dL~~-~gl~~~~~~~~~~~~ 608 (614)
..+++|-++|++. | + +..||.+ +|++...|.+|.++.
T Consensus 18 ~~~~~l~~~r~~~-g-l-sq~elA~~~gis~~~is~~e~g~ 55 (83)
T 2a6c_A 18 QLLIVLQEHLRNS-G-L-TQFKAAELLGVTQPRVSDLMRGK 55 (83)
T ss_dssp HHHHHHHHHHHTT-T-C-CHHHHHHHHTSCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHc-C-C-CHHHHHHHHCcCHHHHHHHHcCC
Confidence 4677888888888 3 3 7888988 899999999887653
No 341
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=27.81 E-value=45 Score=26.02 Aligned_cols=36 Identities=14% Similarity=0.208 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhCCCCCCCHHhhhh-cCCCHHHHHHHHHH
Q 035971 569 KRASYILELREESPEPFKNLDDLKD-IGLSAKQIKGMMKK 607 (614)
Q Consensus 569 ~~A~~Ii~~R~~~gg~f~~~~dL~~-~gl~~~~~~~~~~~ 607 (614)
.++++|-++|+.. | + +.+||.+ +|++...+.+|.++
T Consensus 14 ~~~~~l~~~R~~~-g-l-tq~elA~~~gis~~~is~~e~g 50 (83)
T 3f6w_A 14 ALLDLLLEARSAA-G-I-TQKELAARLGRPQSFVSKTENA 50 (83)
T ss_dssp HHHHHHHHHHHHH-T-C-CHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHc-C-C-CHHHHHHHHCcCHHHHHHHHCC
Confidence 4677778888877 3 3 7788888 88888888887654
No 342
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=27.78 E-value=18 Score=36.02 Aligned_cols=17 Identities=24% Similarity=0.516 Sum_probs=14.8
Q ss_pred eEEEeeccCCCCcceEe
Q 035971 97 ATIVACGAKGSGKTRVI 113 (614)
Q Consensus 97 ~tI~aYGqTGSGKTyTm 113 (614)
..++.+|+.|+|||..+
T Consensus 31 ~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 31 PITLVLGLRRTGKSSII 47 (357)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 58899999999999655
No 343
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=27.77 E-value=27 Score=41.58 Aligned_cols=20 Identities=30% Similarity=0.546 Sum_probs=18.9
Q ss_pred cCCceEEEeeccCCCCcceE
Q 035971 93 NGINATIVACGAKGSGKTRV 112 (614)
Q Consensus 93 ~G~N~tI~aYGqTGSGKTyT 112 (614)
++.|.||+.-|.+|||||.+
T Consensus 143 ~~~~QsIiisGESGAGKTe~ 162 (995)
T 2ycu_A 143 DREDQSILCTGESGAGKTEN 162 (995)
T ss_dssp HCCCEEEEEECBTTSSHHHH
T ss_pred cCCCcEEEecCCCCCCchhh
Confidence 69999999999999999976
No 344
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=27.66 E-value=46 Score=25.71 Aligned_cols=35 Identities=11% Similarity=0.196 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhCCCCCCCHHhhhh-cCCCHHHHHHHHHH
Q 035971 570 RASYILELREESPEPFKNLDDLKD-IGLSAKQIKGMMKK 607 (614)
Q Consensus 570 ~A~~Ii~~R~~~gg~f~~~~dL~~-~gl~~~~~~~~~~~ 607 (614)
++++|-++|+..| + +..+|.+ +|++...+.+|.++
T Consensus 3 ~~~~lk~~r~~~g--l-sq~~lA~~~gis~~~i~~~e~g 38 (77)
T 2k9q_A 3 LSNELKVERIRLS--L-TAKSVAEEMGISRQQLCNIEQS 38 (77)
T ss_dssp HHHHHHHHHHHHT--C-CHHHHHHHHTSCHHHHHHHHTC
T ss_pred HHHHHHHHHHHcC--C-CHHHHHHHhCCCHHHHHHHHcC
Confidence 4667778888773 3 7888888 88888888888654
No 345
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=27.63 E-value=58 Score=27.12 Aligned_cols=32 Identities=9% Similarity=0.112 Sum_probs=27.4
Q ss_pred cCCHHhhccCCCCCHHHHHHHHHHHHhCCCCC
Q 035971 554 TGGKEDLKRLKGIGEKRASYILELREESPEPF 585 (614)
Q Consensus 554 ~A~~~~L~~l~gig~~~A~~Ii~~R~~~gg~f 585 (614)
.-+.++|+.++|+|++-.+.|.+-=+++|=.|
T Consensus 40 ~~se~dLlki~n~G~KSl~EI~~~L~~~GL~~ 71 (86)
T 3k4g_A 40 QRTEVELLXTPNLGXXSLTEIXDVLASRGLSL 71 (86)
T ss_dssp HSCHHHHHTSTTCCHHHHHHHHHHHHTTTCCS
T ss_pred hCCHHHHhhccccCcccHHHHHHHHHHcCCCc
Confidence 45889999999999999999999888885434
No 346
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=27.63 E-value=23 Score=41.03 Aligned_cols=28 Identities=25% Similarity=0.300 Sum_probs=19.5
Q ss_pred HHHHHHhcCCceEEEeeccCCCCcceEe
Q 035971 86 PLISEVFNGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 86 plV~~vl~G~N~tI~aYGqTGSGKTyTm 113 (614)
.+..++-.|....++..|+||||||...
T Consensus 379 ~I~~~l~~~~~~~~Ll~a~TGSGKTlva 406 (780)
T 1gm5_A 379 EIRNDMISEKPMNRLLQGDVGSGKTVVA 406 (780)
T ss_dssp HHHHHHHSSSCCCCEEECCSSSSHHHHH
T ss_pred HHHhhccccCCCcEEEEcCCCCCHHHHH
Confidence 3444444555566888999999999653
No 347
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=27.58 E-value=63 Score=26.42 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=28.3
Q ss_pred hccCCHHhhccCCCCCHHHHHHHHHHHHhCCCCCC
Q 035971 552 LNTGGKEDLKRLKGIGEKRASYILELREESPEPFK 586 (614)
Q Consensus 552 lN~A~~~~L~~l~gig~~~A~~Ii~~R~~~gg~f~ 586 (614)
|=.-+.++|+.++|+|++-.+.|.+.=.+.|=.|.
T Consensus 42 L~~~se~dLlki~n~G~kSl~EI~~~L~e~Gl~l~ 76 (79)
T 3gfk_B 42 LANKTEEDMMKVRNLGRKSLEEVKAKLEELGLGLR 76 (79)
T ss_dssp HTTCCHHHHTTSTTCHHHHHHHHHHHHHHTTCCCC
T ss_pred HHhCCHHHHHHcCCCCHhHHHHHHHHHHHcCCCCC
Confidence 33468999999999999999999987777754454
No 348
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=27.58 E-value=18 Score=41.89 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=14.6
Q ss_pred EEEeeccCCCCcceEee
Q 035971 98 TIVACGAKGSGKTRVIQ 114 (614)
Q Consensus 98 tI~aYGqTGSGKTyTm~ 114 (614)
.++..|+.|||||+|+.
T Consensus 377 ~~lI~GppGTGKT~~i~ 393 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSA 393 (802)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred CEEEECCCCCCHHHHHH
Confidence 46789999999999874
No 349
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=27.47 E-value=23 Score=41.08 Aligned_cols=52 Identities=21% Similarity=0.148 Sum_probs=32.7
Q ss_pred eeeEeeeeecCCCChHHHHhhhhHHHHH-HHhc----CCceEEEeeccCCCCcceEe
Q 035971 62 ECYKLDYCYEQNEGNGIIFAREVKPLIS-EVFN----GINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 62 ~~F~FD~VF~~~asQ~eVf~~~v~plV~-~vl~----G~N~tI~aYGqTGSGKTyTm 113 (614)
..+.||.+.+.+..-+.+.+....|+.. .++. .....|+-||++|+|||+.+
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 3467788877766666666544443332 1222 22346899999999999764
No 350
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=27.31 E-value=17 Score=35.60 Aligned_cols=14 Identities=36% Similarity=0.387 Sum_probs=12.1
Q ss_pred EEEeeccCCCCcce
Q 035971 98 TIVACGAKGSGKTR 111 (614)
Q Consensus 98 tI~aYGqTGSGKTy 111 (614)
.|+..|++|||||.
T Consensus 3 li~I~G~~GSGKST 16 (253)
T 2ze6_A 3 LHLIYGPTCSGKTD 16 (253)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCcCHHH
Confidence 47789999999994
No 351
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=27.26 E-value=81 Score=25.05 Aligned_cols=36 Identities=8% Similarity=0.138 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhCCCCCCCHHhhhh-cCCCHHHHHHHHHH
Q 035971 569 KRASYILELREESPEPFKNLDDLKD-IGLSAKQIKGMMKK 607 (614)
Q Consensus 569 ~~A~~Ii~~R~~~gg~f~~~~dL~~-~gl~~~~~~~~~~~ 607 (614)
.++++|-++|+.. | + +..||.+ +|++...|.+|-++
T Consensus 14 ~~g~~l~~~R~~~-g-l-tq~elA~~~gis~~~is~~E~G 50 (86)
T 3eus_A 14 YLCQRLRQARLDA-G-L-TQADLAERLDKPQSFVAKVETR 50 (86)
T ss_dssp HHHHHHHHHHHHT-T-C-CHHHHHHHTTCCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHc-C-C-CHHHHHHHhCcCHHHHHHHHCC
Confidence 4678888889888 3 3 7888888 89999888888654
No 352
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=27.24 E-value=19 Score=39.97 Aligned_cols=18 Identities=28% Similarity=0.547 Sum_probs=14.9
Q ss_pred eEEEeeccCCCCcceEee
Q 035971 97 ATIVACGAKGSGKTRVIQ 114 (614)
Q Consensus 97 ~tI~aYGqTGSGKTyTm~ 114 (614)
..++..|+.|||||+++.
T Consensus 205 ~~~~I~G~pGTGKTt~i~ 222 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTK 222 (574)
T ss_dssp SEEEEECCTTSCHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHH
Confidence 566778999999998863
No 353
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=27.11 E-value=52 Score=25.78 Aligned_cols=35 Identities=17% Similarity=0.405 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhCCCCCCCHHhhhh-cCCCHHHHHHHHHH
Q 035971 570 RASYILELREESPEPFKNLDDLKD-IGLSAKQIKGMMKK 607 (614)
Q Consensus 570 ~A~~Ii~~R~~~gg~f~~~~dL~~-~gl~~~~~~~~~~~ 607 (614)
-..+|-++|++. | + +..||.+ +|++...+.+|.+.
T Consensus 11 ~~~~ik~~R~~~-g-l-tq~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 11 IGQRIKQYRKEK-G-Y-SLSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HHHHHHHHHHHT-T-C-CHHHHHHHHTCCHHHHHHHHTT
T ss_pred ccHHHHHHHHHc-C-C-CHHHHHHHHCcCHHHHHHHHcC
Confidence 356788999998 3 3 8899999 99999999998765
No 354
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=27.03 E-value=20 Score=41.60 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=17.9
Q ss_pred HHHHhcCCceEEEeeccCCCCcceEee
Q 035971 88 ISEVFNGINATIVACGAKGSGKTRVIQ 114 (614)
Q Consensus 88 V~~vl~G~N~tI~aYGqTGSGKTyTm~ 114 (614)
|..++.+ ..++..|+.|||||+|+.
T Consensus 365 v~~~l~~--~~~lI~GppGTGKT~ti~ 389 (800)
T 2wjy_A 365 VKTVLQR--PLSLIQGPPGTGKTVTSA 389 (800)
T ss_dssp HHHHHTS--SEEEEECCTTSCHHHHHH
T ss_pred HHHhccC--CeEEEEcCCCCCHHHHHH
Confidence 3444443 356789999999999874
No 355
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=26.83 E-value=30 Score=34.49 Aligned_cols=49 Identities=6% Similarity=-0.144 Sum_probs=32.4
Q ss_pred HHHHHHHhcC---CceEEEeeccCCCCcceEeecCCCCcchhHHHHHHHHhhccccCceEEEEEE
Q 035971 85 KPLISEVFNG---INATIVACGAKGSGKTRVIQGSYEEPGLAALAVDEILSISEKMGKSITISFY 146 (614)
Q Consensus 85 ~plV~~vl~G---~N~tI~aYGqTGSGKTyTm~G~~~~~GLipral~~LF~~~~~~~~sV~vS~~ 146 (614)
-|-+|.++.| ...+++..|.+|+||| |+ +++.+.+.++..+..+.++|-
T Consensus 7 i~~LD~~l~GGl~~gs~~li~g~p~~~~~-~l------------~~qfl~~g~~~Ge~~~~~~~~ 58 (260)
T 3bs4_A 7 IEELDREIGKIKKHSLILIHEEDASSRGK-DI------------LFYILSRKLKSDNLVGMFSIS 58 (260)
T ss_dssp SHHHHHHHCCBCTTCEEEEEECSGGGCHH-HH------------HHHHHHHHHHTTCEEEEEECS
T ss_pred cHHHHHHhCCCCCCCcEEEEEeCCCccHH-HH------------HHHHHHHHHHCCCcEEEEEEe
Confidence 3456777876 4566677788888888 55 556666666665566666653
No 356
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=26.82 E-value=76 Score=25.18 Aligned_cols=46 Identities=20% Similarity=0.421 Sum_probs=35.5
Q ss_pred HhhccCCCCCHHHHHHHHHHHHhCCCCCCCHHh--------hhh-cCCCHHHHHHHHHHHh
Q 035971 558 EDLKRLKGIGEKRASYILELREESPEPFKNLDD--------LKD-IGLSAKQIKGMMKKEM 609 (614)
Q Consensus 558 ~~L~~l~gig~~~A~~Ii~~R~~~gg~f~~~~d--------L~~-~gl~~~~~~~~~~~~~ 609 (614)
+-++...||++..|+..++ .| |.++++ |.. .|++...+.+|....-
T Consensus 6 ~~f~~~lgI~e~~a~~L~~-----~G-f~tve~vA~~~~~eL~~I~G~dE~~a~~l~~~A~ 60 (70)
T 1u9l_A 6 DTFTKYLDIDEDFATVLVE-----EG-FSTLEELAYVPMKELLEIEGLDEPTVEALRERAK 60 (70)
T ss_dssp HHHHHHHTCCHHHHHHHHH-----TT-CCCHHHHHHSCHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHH-----cC-cCcHHHHHcCCHHHHhhccCCCHHHHHHHHHHHH
Confidence 4466778999999998875 25 887665 556 7999999999987654
No 357
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=26.78 E-value=27 Score=32.41 Aligned_cols=20 Identities=30% Similarity=0.421 Sum_probs=15.2
Q ss_pred CCceEEEeeccCCCCcceEe
Q 035971 94 GINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 94 G~N~tI~aYGqTGSGKTyTm 113 (614)
.....|...|++|||||+.+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 34456778899999999543
No 358
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=26.77 E-value=12 Score=35.60 Aligned_cols=17 Identities=29% Similarity=0.282 Sum_probs=14.3
Q ss_pred EEEeeccCCCCcceEee
Q 035971 98 TIVACGAKGSGKTRVIQ 114 (614)
Q Consensus 98 tI~aYGqTGSGKTyTm~ 114 (614)
..+-||+.|||||..+.
T Consensus 10 i~v~~G~mgsGKTT~ll 26 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELI 26 (191)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 67889999999997764
No 359
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=26.71 E-value=13 Score=36.46 Aligned_cols=20 Identities=25% Similarity=0.295 Sum_probs=16.7
Q ss_pred ceEEEeeccCCCCcceEeec
Q 035971 96 NATIVACGAKGSGKTRVIQG 115 (614)
Q Consensus 96 N~tI~aYGqTGSGKTyTm~G 115 (614)
...||..|..|+||||+|..
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~ 25 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQ 25 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHH
Confidence 35689999999999999753
No 360
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=26.54 E-value=29 Score=41.65 Aligned_cols=20 Identities=35% Similarity=0.586 Sum_probs=18.8
Q ss_pred cCCceEEEeeccCCCCcceE
Q 035971 93 NGINATIVACGAKGSGKTRV 112 (614)
Q Consensus 93 ~G~N~tI~aYGqTGSGKTyT 112 (614)
++.|.||+.-|.+|||||.+
T Consensus 153 ~~~~QsIiisGESGAGKTe~ 172 (1080)
T 2dfs_A 153 DERNQSIIVSGESGAGKTVS 172 (1080)
T ss_dssp HTCCEEEEEECSTTSSHHHH
T ss_pred cCCCcEEEEcCCCCCCccch
Confidence 69999999999999999976
No 361
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=26.54 E-value=73 Score=27.15 Aligned_cols=34 Identities=15% Similarity=0.180 Sum_probs=29.3
Q ss_pred hccCCHHhhccCCCCCHHHHHHHHHHHHhCCCCC
Q 035971 552 LNTGGKEDLKRLKGIGEKRASYILELREESPEPF 585 (614)
Q Consensus 552 lN~A~~~~L~~l~gig~~~A~~Ii~~R~~~gg~f 585 (614)
|-.-+.++|+.++|+|++-.+.|.+-=+.+|-.|
T Consensus 50 L~~~se~dLlki~n~G~KSl~EI~~~L~~~Gl~l 83 (98)
T 1coo_A 50 LVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSL 83 (98)
T ss_dssp HHTSCHHHHTTSTTCCHHHHHHHHHHHHHTTCCT
T ss_pred HHhCCHHHHHhcCCCCHHHHHHHHHHHHHcCccc
Confidence 4456899999999999999999999988886555
No 362
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=26.50 E-value=17 Score=32.96 Aligned_cols=16 Identities=38% Similarity=0.603 Sum_probs=13.6
Q ss_pred eEEEeeccCCCCcceE
Q 035971 97 ATIVACGAKGSGKTRV 112 (614)
Q Consensus 97 ~tI~aYGqTGSGKTyT 112 (614)
..|+..|..|||||+.
T Consensus 6 ~~I~l~G~~GsGKST~ 21 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTL 21 (193)
T ss_dssp EEEEEEESTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4688999999999963
No 363
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=26.46 E-value=39 Score=36.27 Aligned_cols=18 Identities=39% Similarity=0.536 Sum_probs=14.8
Q ss_pred ceEEEeeccCCCCcceEe
Q 035971 96 NATIVACGAKGSGKTRVI 113 (614)
Q Consensus 96 N~tI~aYGqTGSGKTyTm 113 (614)
...|+..|++|+|||+|+
T Consensus 97 ~~vI~lvG~~GsGKTTt~ 114 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTA 114 (433)
T ss_dssp SEEEEECCCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 356777799999999886
No 364
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=26.42 E-value=24 Score=38.75 Aligned_cols=17 Identities=41% Similarity=0.628 Sum_probs=14.5
Q ss_pred eEEEeeccCCCCcceEe
Q 035971 97 ATIVACGAKGSGKTRVI 113 (614)
Q Consensus 97 ~tI~aYGqTGSGKTyTm 113 (614)
..|...|++|||||.++
T Consensus 294 eVI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCcccHHHHH
Confidence 36778899999999876
No 365
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=26.35 E-value=31 Score=30.82 Aligned_cols=42 Identities=26% Similarity=0.377 Sum_probs=27.7
Q ss_pred HhhccCCCCCHHHHHHHHHHHHhCCCCCCCHHhhhhcCCCHHHHHHHHH
Q 035971 558 EDLKRLKGIGEKRASYILELREESPEPFKNLDDLKDIGLSAKQIKGMMK 606 (614)
Q Consensus 558 ~~L~~l~gig~~~A~~Ii~~R~~~gg~f~~~~dL~~~gl~~~~~~~~~~ 606 (614)
-.|..|+|||...|..|++.=.-. |-.-+.| |+.+++.++..
T Consensus 17 ~aLt~I~GIG~~~A~~I~~~~gi~--~~~r~~~-----Lt~~ei~~l~~ 58 (126)
T 2vqe_M 17 VALTYIYGIGKARAKEALEKTGIN--PATRVKD-----LTEAEVVRLRE 58 (126)
T ss_dssp HHHTTSSSCCSHHHHHHTTTTTCC--TTSBGGG-----CCHHHHHHHHH
T ss_pred eehhccccccHHHHHHHHHHcCCC--cccccCc-----CCHHHHHHHHH
Confidence 468899999999999998643222 3333333 46666665543
No 366
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=26.21 E-value=14 Score=38.50 Aligned_cols=19 Identities=37% Similarity=0.469 Sum_probs=14.0
Q ss_pred cCCceEEEeeccCCCCcceEe
Q 035971 93 NGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 93 ~G~N~tI~aYGqTGSGKTyTm 113 (614)
.|.+. .-.|++|||||+++
T Consensus 174 ~G~~i--~ivG~sGsGKSTll 192 (361)
T 2gza_A 174 LERVI--VVAGETGSGKTTLM 192 (361)
T ss_dssp TTCCE--EEEESSSSCHHHHH
T ss_pred cCCEE--EEECCCCCCHHHHH
Confidence 56544 44599999999765
No 367
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=26.21 E-value=30 Score=41.39 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=19.3
Q ss_pred cCCceEEEeeccCCCCcceEe
Q 035971 93 NGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 93 ~G~N~tI~aYGqTGSGKTyTm 113 (614)
.+.|.||+.-|.+|||||.+.
T Consensus 141 ~~~nQsIiiSGESGAGKTest 161 (1052)
T 4anj_A 141 LKLSQSIIVSGESGAGKTENT 161 (1052)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred hCCCceEEEecCCCCCHHHHH
Confidence 699999999999999999764
No 368
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=26.09 E-value=30 Score=41.10 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=17.5
Q ss_pred HHHHhcCCceEEEeeccCCCCcceE
Q 035971 88 ISEVFNGINATIVACGAKGSGKTRV 112 (614)
Q Consensus 88 V~~vl~G~N~tI~aYGqTGSGKTyT 112 (614)
|..+++|.+ ++..|+||||||.+
T Consensus 48 I~~il~g~~--vlv~apTGsGKTlv 70 (997)
T 4a4z_A 48 VYHLEQGDS--VFVAAHTSAGKTVV 70 (997)
T ss_dssp HHHHHTTCE--EEEECCTTSCSHHH
T ss_pred HHHHHcCCC--EEEEECCCCcHHHH
Confidence 445667754 78899999999954
No 369
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=25.98 E-value=19 Score=33.58 Aligned_cols=15 Identities=40% Similarity=0.906 Sum_probs=12.1
Q ss_pred EEEeeccCCCCcceE
Q 035971 98 TIVACGAKGSGKTRV 112 (614)
Q Consensus 98 tI~aYGqTGSGKTyT 112 (614)
.|+..|++|||||+.
T Consensus 14 ~i~l~G~sGsGKsTl 28 (204)
T 2qor_A 14 PLVVCGPSGVGKGTL 28 (204)
T ss_dssp CEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467789999999953
No 370
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=25.81 E-value=21 Score=32.32 Aligned_cols=15 Identities=27% Similarity=0.534 Sum_probs=12.8
Q ss_pred EEEeeccCCCCcceE
Q 035971 98 TIVACGAKGSGKTRV 112 (614)
Q Consensus 98 tI~aYGqTGSGKTyT 112 (614)
.|+..|..|||||+.
T Consensus 6 ~I~l~G~~GsGKST~ 20 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQ 20 (186)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578899999999953
No 371
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=25.69 E-value=19 Score=32.55 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=13.2
Q ss_pred eEEEeeccCCCCcceE
Q 035971 97 ATIVACGAKGSGKTRV 112 (614)
Q Consensus 97 ~tI~aYGqTGSGKTyT 112 (614)
..|+..|..|||||+.
T Consensus 4 ~~I~l~G~~GsGKsT~ 19 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQ 19 (196)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3578899999999953
No 372
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=25.53 E-value=35 Score=34.57 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=20.0
Q ss_pred ccCCHHhhccCCCCCHHHHHHHHH
Q 035971 553 NTGGKEDLKRLKGIGEKRASYILE 576 (614)
Q Consensus 553 N~A~~~~L~~l~gig~~~A~~Ii~ 576 (614)
+..-...|+.||||++.+|.+|++
T Consensus 232 ~e~~~~mL~~IpGVs~~~A~~I~~ 255 (311)
T 2ziu_A 232 REVFARQLMQISGVSGDKAAAVLE 255 (311)
T ss_dssp HHHHHHHHTTBTTCCHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHH
Confidence 344456899999999999999995
No 373
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=25.52 E-value=14 Score=37.91 Aligned_cols=19 Identities=47% Similarity=0.894 Sum_probs=14.3
Q ss_pred cCCceEEEeeccCCCCcceEe
Q 035971 93 NGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 93 ~G~N~tI~aYGqTGSGKTyTm 113 (614)
.|. .+...|++|||||+++
T Consensus 170 ~g~--~v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 170 IGK--NVIVCGGTGSGKTTYI 188 (330)
T ss_dssp HTC--CEEEEESTTSCHHHHH
T ss_pred CCC--EEEEECCCCCCHHHHH
Confidence 455 4556799999999765
No 374
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=25.45 E-value=66 Score=26.65 Aligned_cols=35 Identities=26% Similarity=0.312 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhCCCCCCCHHhhhh-cCCCHHHHHHHHH
Q 035971 569 KRASYILELREESPEPFKNLDDLKD-IGLSAKQIKGMMK 606 (614)
Q Consensus 569 ~~A~~Ii~~R~~~gg~f~~~~dL~~-~gl~~~~~~~~~~ 606 (614)
.++++|-++|+.. | + +.++|.+ +|++...+.+|.+
T Consensus 28 ~ig~~lr~~R~~~-g-l-tq~elA~~~gis~~~is~iE~ 63 (99)
T 3g5g_A 28 KVSFVIKKIRLEK-G-M-TQEDLAYKSNLDRTYISGIER 63 (99)
T ss_dssp HHHHHHHHHHHHT-T-C-CHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHc-C-C-CHHHHHHHHCcCHHHHHHHHC
Confidence 3445555555555 2 2 4555555 5555555555543
No 375
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=25.42 E-value=19 Score=35.16 Aligned_cols=26 Identities=23% Similarity=0.506 Sum_probs=22.6
Q ss_pred hhhccCCHHhhccCCCCCH-HHHHHHHHH
Q 035971 550 KLLNTGGKEDLKRLKGIGE-KRASYILEL 577 (614)
Q Consensus 550 ~~lN~A~~~~L~~l~gig~-~~A~~Ii~~ 577 (614)
..|-.|+.+||..+ ||+ ++|+.|.+|
T Consensus 192 ~~i~~As~EeL~~V--IG~~~~A~~I~~~ 218 (220)
T 2nrt_A 192 ENIRSASLEEIARV--IGSTEIARRVLDI 218 (220)
T ss_dssp HHHHTSCHHHHHHH--HTCHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHH--hChHHHHHHHHHH
Confidence 33668999999999 999 999999876
No 376
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=25.32 E-value=15 Score=35.07 Aligned_cols=15 Identities=47% Similarity=0.973 Sum_probs=12.0
Q ss_pred EEeeccCCCCcceEe
Q 035971 99 IVACGAKGSGKTRVI 113 (614)
Q Consensus 99 I~aYGqTGSGKTyTm 113 (614)
+.-.|++|||||..+
T Consensus 26 ~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 26 LVICGPSGVGKGTLI 40 (218)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 455799999999665
No 377
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=25.19 E-value=18 Score=29.90 Aligned_cols=28 Identities=14% Similarity=0.343 Sum_probs=23.2
Q ss_pred HhhhccCCHHhhccCCCCCHHH-HHHHHHHH
Q 035971 549 LKLLNTGGKEDLKRLKGIGEKR-ASYILELR 578 (614)
Q Consensus 549 ~~~lN~A~~~~L~~l~gig~~~-A~~Ii~~R 578 (614)
+..|=.|+.+||..+ ||.+. |+.|.++=
T Consensus 41 l~~i~~AS~eEL~~v--ig~~~~A~~I~~~l 69 (84)
T 1z00_B 41 IAELAALSQDELTSI--LGNAANAKQLYDFI 69 (84)
T ss_dssp HHHHHHSCHHHHHHH--HSCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHH--hCchHHHHHHHHHH
Confidence 344678999999999 99999 99997643
No 378
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=25.02 E-value=35 Score=34.99 Aligned_cols=29 Identities=28% Similarity=0.357 Sum_probs=22.0
Q ss_pred HHHHHHHhcC-C--ceEEEeeccCCCCcceEe
Q 035971 85 KPLISEVFNG-I--NATIVACGAKGSGKTRVI 113 (614)
Q Consensus 85 ~plV~~vl~G-~--N~tI~aYGqTGSGKTyTm 113 (614)
-+-++.++.| + ...+.-||++|||||..+
T Consensus 108 ~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla 139 (343)
T 1v5w_A 108 SQEFDKLLGGGIESMAITEAFGEFRTGKTQLS 139 (343)
T ss_dssp CHHHHHHTTSSBCSSEEEEEECCTTCTHHHHH
T ss_pred ChhHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4568888863 3 356889999999999654
No 379
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=24.97 E-value=20 Score=32.86 Aligned_cols=15 Identities=40% Similarity=0.742 Sum_probs=12.9
Q ss_pred EEEeeccCCCCcceE
Q 035971 98 TIVACGAKGSGKTRV 112 (614)
Q Consensus 98 tI~aYGqTGSGKTyT 112 (614)
.|+..|..|||||+.
T Consensus 12 ~I~l~G~~GsGKSTv 26 (184)
T 1y63_A 12 NILITGTPGTGKTSM 26 (184)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 588899999999953
No 380
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=24.88 E-value=18 Score=40.55 Aligned_cols=20 Identities=40% Similarity=0.622 Sum_probs=16.8
Q ss_pred CceEEEeeccCCCCcceEee
Q 035971 95 INATIVACGAKGSGKTRVIQ 114 (614)
Q Consensus 95 ~N~tI~aYGqTGSGKTyTm~ 114 (614)
.+..++..|..|||||++|.
T Consensus 14 ~~~~~lV~AgaGSGKT~~l~ 33 (673)
T 1uaa_A 14 VTGPCLVLAGAGSGKTRVIT 33 (673)
T ss_dssp CSSEEEECCCTTSCHHHHHH
T ss_pred CCCCEEEEeCCCCChHHHHH
Confidence 35678888999999999985
No 381
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=24.84 E-value=81 Score=26.57 Aligned_cols=37 Identities=14% Similarity=0.281 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHhhhh-cCCCHHHHHHHHH
Q 035971 567 GEKRASYILELREESPEPFKNLDDLKD-IGLSAKQIKGMMK 606 (614)
Q Consensus 567 g~~~A~~Ii~~R~~~gg~f~~~~dL~~-~gl~~~~~~~~~~ 606 (614)
-+.+.++|-++|+.. | + +-+||.+ .|++...|.+|=+
T Consensus 34 ~~~lG~~ir~~R~~~-g-l-TQ~eLA~~~gvs~~~is~~E~ 71 (101)
T 4ghj_A 34 AEEIGDRLKQARLNR-D-L-TQSEVAEIAGIARKTVLNAEK 71 (101)
T ss_dssp HHHHHHHHHHHHHHT-T-C-CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc-C-C-CHHHHHHHcCCCHHHHHHHHC
Confidence 356788999999999 4 4 8999999 9999999998854
No 382
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=24.81 E-value=31 Score=41.25 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=17.7
Q ss_pred HHHHHhcCCceEEEeeccCCCCcce
Q 035971 87 LISEVFNGINATIVACGAKGSGKTR 111 (614)
Q Consensus 87 lV~~vl~G~N~tI~aYGqTGSGKTy 111 (614)
.+..+++|.| ++..++||||||.
T Consensus 64 ai~~il~g~d--vlv~apTGSGKTl 86 (1054)
T 1gku_B 64 WAKRILRKES--FAATAPTGVGKTS 86 (1054)
T ss_dssp HHHHHHTTCC--EECCCCBTSCSHH
T ss_pred HHHHHHhCCC--EEEEcCCCCCHHH
Confidence 4456677866 5788999999994
No 383
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=24.75 E-value=32 Score=34.99 Aligned_cols=27 Identities=19% Similarity=0.337 Sum_probs=18.7
Q ss_pred HHHHHhcCC-ceEEEeeccCCCCcceEe
Q 035971 87 LISEVFNGI-NATIVACGAKGSGKTRVI 113 (614)
Q Consensus 87 lV~~vl~G~-N~tI~aYGqTGSGKTyTm 113 (614)
+...+-.|. ...++-||+.|+|||.+.
T Consensus 14 l~~~i~~~~~~~a~L~~G~~G~GKt~~a 41 (334)
T 1a5t_A 14 LVASYQAGRGHHALLIQALPGMGDDALI 41 (334)
T ss_dssp HHHHHHTTCCCSEEEEECCTTSCHHHHH
T ss_pred HHHHHHcCCcceeEEEECCCCchHHHHH
Confidence 334444454 446899999999999654
No 384
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=24.69 E-value=41 Score=33.84 Aligned_cols=20 Identities=30% Similarity=0.316 Sum_probs=15.2
Q ss_pred CCceEEEeeccCCCCcceEe
Q 035971 94 GINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 94 G~N~tI~aYGqTGSGKTyTm 113 (614)
+....|.-.|++|||||+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 44456777899999999654
No 385
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=24.65 E-value=74 Score=26.40 Aligned_cols=36 Identities=8% Similarity=0.072 Sum_probs=28.5
Q ss_pred HHHHHHHHhCCCCCCCHHhhhh-cCCCHHHHHHHHHHHh
Q 035971 572 SYILELREESPEPFKNLDDLKD-IGLSAKQIKGMMKKEM 609 (614)
Q Consensus 572 ~~Ii~~R~~~gg~f~~~~dL~~-~gl~~~~~~~~~~~~~ 609 (614)
+.|+++=.+. | +.++.||.+ .|+|..+|++.+..-.
T Consensus 5 ~~Il~~L~~~-g-~vsv~eLA~~l~VS~~TIRrDL~~Le 41 (87)
T 2k02_A 5 MEVRDMLALQ-G-RMEAKQLSARLQTPQPLIDAMLERME 41 (87)
T ss_dssp HHHHHHHHHS-C-SEEHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-C-CCcHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4677776666 4 778999988 9999999988888765
No 386
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=24.61 E-value=34 Score=39.25 Aligned_cols=25 Identities=44% Similarity=0.643 Sum_probs=18.7
Q ss_pred HHHHHhcCCceEEEeeccCCCCcceEe
Q 035971 87 LISEVFNGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 87 lV~~vl~G~N~tI~aYGqTGSGKTyTm 113 (614)
.+..++.|.| ++..++||||||.+.
T Consensus 256 ~i~~~l~~~~--~ll~~~TGsGKTl~~ 280 (797)
T 4a2q_A 256 LAQPAINGKN--ALICAPTGSGKTFVS 280 (797)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHhCCC--EEEEeCCCChHHHHH
Confidence 3445677876 567899999999763
No 387
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=24.57 E-value=20 Score=32.34 Aligned_cols=14 Identities=29% Similarity=0.465 Sum_probs=12.2
Q ss_pred EEEeeccCCCCcce
Q 035971 98 TIVACGAKGSGKTR 111 (614)
Q Consensus 98 tI~aYGqTGSGKTy 111 (614)
.|+..|..|||||+
T Consensus 3 ~I~i~G~~GsGKsT 16 (194)
T 1nks_A 3 IGIVTGIPGVGKST 16 (194)
T ss_dssp EEEEEECTTSCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47889999999995
No 388
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=24.49 E-value=16 Score=33.10 Aligned_cols=16 Identities=38% Similarity=0.528 Sum_probs=13.3
Q ss_pred EEEeeccCCCCcceEe
Q 035971 98 TIVACGAKGSGKTRVI 113 (614)
Q Consensus 98 tI~aYGqTGSGKTyTm 113 (614)
...-+|++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 5678899999999764
No 389
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=24.41 E-value=26 Score=32.00 Aligned_cols=20 Identities=35% Similarity=0.351 Sum_probs=15.2
Q ss_pred cCCceEEEeeccCCCCcceE
Q 035971 93 NGINATIVACGAKGSGKTRV 112 (614)
Q Consensus 93 ~G~N~tI~aYGqTGSGKTyT 112 (614)
.+....|.-.|+.|||||+.
T Consensus 5 ~~~~~~I~i~G~~GsGKST~ 24 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTV 24 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHH
T ss_pred ccCceEEEEECCCCCCHHHH
Confidence 34456788899999999953
No 390
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=24.33 E-value=23 Score=31.77 Aligned_cols=16 Identities=44% Similarity=0.603 Sum_probs=13.3
Q ss_pred eEEEeeccCCCCcceE
Q 035971 97 ATIVACGAKGSGKTRV 112 (614)
Q Consensus 97 ~tI~aYGqTGSGKTyT 112 (614)
..|+..|+.|||||+.
T Consensus 9 ~~i~l~G~~GsGKSTl 24 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAV 24 (175)
T ss_dssp EEEEEECSTTSCHHHH
T ss_pred cEEEEEcCCCCCHHHH
Confidence 4678889999999964
No 391
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=24.31 E-value=16 Score=36.87 Aligned_cols=17 Identities=41% Similarity=0.657 Sum_probs=14.2
Q ss_pred eEEEeeccCCCCcceEe
Q 035971 97 ATIVACGAKGSGKTRVI 113 (614)
Q Consensus 97 ~tI~aYGqTGSGKTyTm 113 (614)
..|...|++|+|||+++
T Consensus 106 ~vi~lvG~~GsGKTTl~ 122 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTL 122 (296)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 36667899999999886
No 392
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=24.22 E-value=21 Score=31.78 Aligned_cols=15 Identities=47% Similarity=0.729 Sum_probs=12.4
Q ss_pred EEEeeccCCCCcceE
Q 035971 98 TIVACGAKGSGKTRV 112 (614)
Q Consensus 98 tI~aYGqTGSGKTyT 112 (614)
.|+..|..|||||+.
T Consensus 4 ~I~l~G~~GsGKsT~ 18 (173)
T 1e6c_A 4 PIFMVGARGCGMTTV 18 (173)
T ss_dssp CEEEESCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 377889999999953
No 393
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=24.17 E-value=55 Score=26.83 Aligned_cols=48 Identities=15% Similarity=0.186 Sum_probs=40.2
Q ss_pred ccCCCCCHHHHHHHHHHHHhCCCCCCCHHhhhh-cCCCHHHHHHHHHHHh
Q 035971 561 KRLKGIGEKRASYILELREESPEPFKNLDDLKD-IGLSAKQIKGMMKKEM 609 (614)
Q Consensus 561 ~~l~gig~~~A~~Ii~~R~~~gg~f~~~~dL~~-~gl~~~~~~~~~~~~~ 609 (614)
+.=||+...+-++||+.=...|.|. +.-||.+ .|+..+.+.+.|...-
T Consensus 11 ~~~~~~~~d~eekVLe~LkeaG~Pl-kageIae~~GvdKKeVdKaik~LK 59 (80)
T 2lnb_A 11 MADPGREGHLEQRILQVLTEAGSPV-KLAQLVKECQAPKRELNQVLYRMK 59 (80)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHTSCE-EHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred ccCCcccchHHHHHHHHHHHcCCCC-CHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4558899999999999888888888 5667777 9999999999987654
No 394
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=24.08 E-value=28 Score=40.91 Aligned_cols=25 Identities=44% Similarity=0.643 Sum_probs=18.8
Q ss_pred HHHHHhcCCceEEEeeccCCCCcceEe
Q 035971 87 LISEVFNGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 87 lV~~vl~G~N~tI~aYGqTGSGKTyTm 113 (614)
.+..++.|.+ ++..++||||||.+.
T Consensus 256 ai~~il~g~~--~ll~a~TGsGKTl~~ 280 (936)
T 4a2w_A 256 LAQPAINGKN--ALICAPTGSGKTFVS 280 (936)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHcCCC--EEEEeCCCchHHHHH
Confidence 3445577877 567789999999874
No 395
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=23.86 E-value=17 Score=34.29 Aligned_cols=16 Identities=38% Similarity=0.646 Sum_probs=13.2
Q ss_pred EEEeeccCCCCcceEe
Q 035971 98 TIVACGAKGSGKTRVI 113 (614)
Q Consensus 98 tI~aYGqTGSGKTyTm 113 (614)
.+.-.|+.|+|||.++
T Consensus 3 ~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CEEEESCCSSCHHHHH
T ss_pred EEEEECCCCChHHHHH
Confidence 3567899999999776
No 396
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=23.78 E-value=36 Score=34.24 Aligned_cols=30 Identities=27% Similarity=0.495 Sum_probs=22.6
Q ss_pred hHHHHHHHhcC-C--ceEEEeeccCCCCcceEe
Q 035971 84 VKPLISEVFNG-I--NATIVACGAKGSGKTRVI 113 (614)
Q Consensus 84 v~plV~~vl~G-~--N~tI~aYGqTGSGKTyTm 113 (614)
..+-++.++.| + ...+..||++|+|||..+
T Consensus 83 G~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la 115 (322)
T 2i1q_A 83 SSSELDSVLGGGLESQSVTEFAGVFGSGKTQIM 115 (322)
T ss_dssp SCHHHHHHTTSSEETTEEEEEEESTTSSHHHHH
T ss_pred CChhHHHhcCCCccCCeEEEEECCCCCCHHHHH
Confidence 45678888854 3 356899999999999653
No 397
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=23.77 E-value=18 Score=35.61 Aligned_cols=21 Identities=33% Similarity=0.670 Sum_probs=16.7
Q ss_pred cCCceEEEeeccCCCCcceEe
Q 035971 93 NGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 93 ~G~N~tI~aYGqTGSGKTyTm 113 (614)
.|+...|+..|.+|+|||..+
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLi 25 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLI 25 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHH
T ss_pred CccEEEEEEECCCCCCHHHHH
Confidence 588899999999999999543
No 398
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=23.57 E-value=23 Score=32.82 Aligned_cols=16 Identities=50% Similarity=0.806 Sum_probs=13.2
Q ss_pred eEEEeeccCCCCcceE
Q 035971 97 ATIVACGAKGSGKTRV 112 (614)
Q Consensus 97 ~tI~aYGqTGSGKTyT 112 (614)
..|+..|..|||||+.
T Consensus 19 ~~I~l~G~~GsGKSTl 34 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSV 34 (202)
T ss_dssp SCEEEECSTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3588899999999953
No 399
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=23.55 E-value=28 Score=32.33 Aligned_cols=16 Identities=38% Similarity=0.451 Sum_probs=12.4
Q ss_pred EEEeeccCCCCcceEe
Q 035971 98 TIVACGAKGSGKTRVI 113 (614)
Q Consensus 98 tI~aYGqTGSGKTyTm 113 (614)
.+.-.|.+|||||..+
T Consensus 6 ~i~i~G~sGsGKTTl~ 21 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLM 21 (169)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4666799999999644
No 400
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=23.53 E-value=23 Score=31.88 Aligned_cols=15 Identities=40% Similarity=0.459 Sum_probs=8.9
Q ss_pred eEEEeeccCCCCcce
Q 035971 97 ATIVACGAKGSGKTR 111 (614)
Q Consensus 97 ~tI~aYGqTGSGKTy 111 (614)
..|+..|..|||||+
T Consensus 6 ~~I~l~G~~GsGKST 20 (183)
T 2vli_A 6 PIIWINGPFGVGKTH 20 (183)
T ss_dssp CEEEEECCC----CH
T ss_pred eEEEEECCCCCCHHH
Confidence 368889999999995
No 401
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=23.23 E-value=25 Score=33.15 Aligned_cols=25 Identities=32% Similarity=0.675 Sum_probs=17.4
Q ss_pred HHHHhc-CC--ceEEEeeccCCCCcceE
Q 035971 88 ISEVFN-GI--NATIVACGAKGSGKTRV 112 (614)
Q Consensus 88 V~~vl~-G~--N~tI~aYGqTGSGKTyT 112 (614)
+|.++. |+ ...++.+|.+|+|||..
T Consensus 19 LD~~l~GGl~~G~l~~i~G~pG~GKT~l 46 (251)
T 2zts_A 19 FDELIEGGFPEGTTVLLTGGTGTGKTTF 46 (251)
T ss_dssp TGGGTTTSEETTCEEEEECCTTSSHHHH
T ss_pred HHHhhcCCCCCCeEEEEEeCCCCCHHHH
Confidence 455554 32 34678899999999943
No 402
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=22.96 E-value=40 Score=31.16 Aligned_cols=52 Identities=19% Similarity=0.202 Sum_probs=40.2
Q ss_pred hccCCHHhhcc-CCCCC--HHHHHHHHHHHH-hCCCCCCCHHhhhh-cCCCHHHHHHHHH
Q 035971 552 LNTGGKEDLKR-LKGIG--EKRASYILELRE-ESPEPFKNLDDLKD-IGLSAKQIKGMMK 606 (614)
Q Consensus 552 lN~A~~~~L~~-l~gig--~~~A~~Ii~~R~-~~gg~f~~~~dL~~-~gl~~~~~~~~~~ 606 (614)
|-.|+.++|.. |.|+| ..+|++|++.=+ ... ++.++|.+ .|++..++..++.
T Consensus 66 la~a~~~el~~~i~~lG~y~~KAk~i~~~a~~~vp---~~~~~L~~LpGVG~yTAdav~~ 122 (161)
T 4e9f_A 66 ARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLT---KQWKYPIELHGIGKYGNDSYRI 122 (161)
T ss_dssp HTTSCHHHHHHHHGGGSCHHHHHHHHHHHHHHHHH---SCCSSGGGSTTCCHHHHHHHHH
T ss_pred HhccChHhHHhHhhhcCCHHHHHHHHHHHhCCcCC---CChhhhhcCCCchHHHHHHHHH
Confidence 56889999876 79999 469999998543 331 47789999 9999999987654
No 403
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=22.95 E-value=70 Score=24.87 Aligned_cols=36 Identities=8% Similarity=0.287 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhCCCCCCCHHhhhh-cCCCHHHHHHHHHH
Q 035971 569 KRASYILELREESPEPFKNLDDLKD-IGLSAKQIKGMMKK 607 (614)
Q Consensus 569 ~~A~~Ii~~R~~~gg~f~~~~dL~~-~gl~~~~~~~~~~~ 607 (614)
.+.+.|-++|++. | + +..+|.+ +|++...+.+|.++
T Consensus 12 ~l~~~l~~~r~~~-g-l-tq~~lA~~~gvs~~~is~~e~g 48 (80)
T 3kz3_A 12 RLKAIWEKKKNEL-G-L-SYESVADKMGMGQSAVAALFNG 48 (80)
T ss_dssp HHHHHHHHHHHHH-T-C-CHHHHHHHTTSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHc-C-C-CHHHHHHHhCcCHHHHHHHHcC
Confidence 3445555566655 2 3 5666666 67776666666543
No 404
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=22.91 E-value=85 Score=32.13 Aligned_cols=29 Identities=14% Similarity=0.177 Sum_probs=23.0
Q ss_pred hhccCCCCCHHHHHHHHHHHHhCCCCCCCHHhhhh
Q 035971 559 DLKRLKGIGEKRASYILELREESPEPFKNLDDLKD 593 (614)
Q Consensus 559 ~L~~l~gig~~~A~~Ii~~R~~~gg~f~~~~dL~~ 593 (614)
.|.+|||||+..++++- +. | +.+++||.+
T Consensus 162 pL~Qlp~i~~~~~~~l~----~~-~-i~s~~~l~~ 190 (339)
T 2q0z_X 162 YLKQLPHFTSEHIKRCT----DK-G-VESVFDIME 190 (339)
T ss_dssp GGGGSTTCCHHHHHHHH----HT-T-CCSHHHHHH
T ss_pred ceecCCCCCHHHHHHHH----hc-C-CCCHHHHHh
Confidence 58899999999988873 23 4 788988865
No 405
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=22.90 E-value=22 Score=38.83 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=18.1
Q ss_pred HHHHHhcCCceEEEeeccCCCCcceEe
Q 035971 87 LISEVFNGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 87 lV~~vl~G~N~tI~aYGqTGSGKTyTm 113 (614)
+++.+++|.++ +..++||+|||.+.
T Consensus 33 ~i~~il~g~d~--lv~apTGsGKTl~~ 57 (523)
T 1oyw_A 33 IIDTVLSGRDC--LVVMPTGGGKSLCY 57 (523)
T ss_dssp HHHHHHTTCCE--EEECSCHHHHHHHH
T ss_pred HHHHHHcCCCE--EEECCCCcHHHHHH
Confidence 34566788864 55679999999753
No 406
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=22.86 E-value=29 Score=36.77 Aligned_cols=16 Identities=38% Similarity=0.358 Sum_probs=13.6
Q ss_pred EEEeeccCCCCcceEe
Q 035971 98 TIVACGAKGSGKTRVI 113 (614)
Q Consensus 98 tI~aYGqTGSGKTyTm 113 (614)
.++..|+||||||...
T Consensus 4 ~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRV 19 (431)
T ss_dssp EEEEECCTTSCTTTTH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4788999999999763
No 407
>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans}
Probab=22.80 E-value=47 Score=26.43 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=18.7
Q ss_pred hccCCHHhhccCCCCCHHHHHH
Q 035971 552 LNTGGKEDLKRLKGIGEKRASY 573 (614)
Q Consensus 552 lN~A~~~~L~~l~gig~~~A~~ 573 (614)
-.-.|.++|..|+|||+.+.++
T Consensus 41 ~~P~t~~eL~~i~Gvg~~k~~~ 62 (77)
T 2rhf_A 41 RQPRTLAELAEVPGLGEKRIEA 62 (77)
T ss_dssp HCCCSHHHHTTSTTTCHHHHHH
T ss_pred hCCCCHHHHhhCCCCCHHHHHH
Confidence 4678999999999999987754
No 408
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=22.78 E-value=24 Score=32.02 Aligned_cols=13 Identities=46% Similarity=0.670 Sum_probs=11.5
Q ss_pred EEeeccCCCCcce
Q 035971 99 IVACGAKGSGKTR 111 (614)
Q Consensus 99 I~aYGqTGSGKTy 111 (614)
|+..|..|||||+
T Consensus 5 I~l~G~~GsGKsT 17 (184)
T 2iyv_A 5 AVLVGLPGSGKST 17 (184)
T ss_dssp EEEECSTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 7788999999994
No 409
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=22.65 E-value=24 Score=31.78 Aligned_cols=14 Identities=50% Similarity=0.650 Sum_probs=11.8
Q ss_pred EEEeeccCCCCcce
Q 035971 98 TIVACGAKGSGKTR 111 (614)
Q Consensus 98 tI~aYGqTGSGKTy 111 (614)
.|+..|+.|||||+
T Consensus 6 ~i~i~G~~GsGKsT 19 (175)
T 1via_A 6 NIVFIGFMGSGKST 19 (175)
T ss_dssp CEEEECCTTSCHHH
T ss_pred EEEEEcCCCCCHHH
Confidence 36778999999995
No 410
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=22.53 E-value=23 Score=32.31 Aligned_cols=15 Identities=40% Similarity=0.532 Sum_probs=12.8
Q ss_pred EEEeeccCCCCcceE
Q 035971 98 TIVACGAKGSGKTRV 112 (614)
Q Consensus 98 tI~aYGqTGSGKTyT 112 (614)
.|+..|..|||||+.
T Consensus 14 ~I~l~G~~GsGKsT~ 28 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQ 28 (199)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 588899999999953
No 411
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=22.38 E-value=31 Score=36.79 Aligned_cols=24 Identities=8% Similarity=0.008 Sum_probs=16.9
Q ss_pred HHHhcCCceEEEeeccCCCCcceEee
Q 035971 89 SEVFNGINATIVACGAKGSGKTRVIQ 114 (614)
Q Consensus 89 ~~vl~G~N~tI~aYGqTGSGKTyTm~ 114 (614)
+.++.|.+ ++..|+||||||.+..
T Consensus 123 ~~~~~~~~--~ll~~~tGsGKT~~~~ 146 (510)
T 2oca_A 123 FEGLVNRR--RILNLPTSAGRSLIQA 146 (510)
T ss_dssp HHHHHHSE--EEEECCSTTTHHHHHH
T ss_pred HHHHhcCC--cEEEeCCCCCHHHHHH
Confidence 33445544 5778999999998753
No 412
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=22.34 E-value=32 Score=34.81 Aligned_cols=30 Identities=17% Similarity=0.071 Sum_probs=20.9
Q ss_pred hHHHHHHHhcCCceEEEeeccCCCCcceEe
Q 035971 84 VKPLISEVFNGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 84 v~plV~~vl~G~N~tI~aYGqTGSGKTyTm 113 (614)
+..+...+-.|..-.++-||+.|+|||.+.
T Consensus 6 ~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a 35 (305)
T 2gno_A 6 LETLKRIIEKSEGISILINGEDLSYPREVS 35 (305)
T ss_dssp HHHHHHHHHTCSSEEEEEECSSSSHHHHHH
T ss_pred HHHHHHHHHCCCCcEEEEECCCCCCHHHHH
Confidence 334444445566567889999999998643
No 413
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=22.25 E-value=20 Score=34.53 Aligned_cols=17 Identities=41% Similarity=0.487 Sum_probs=14.2
Q ss_pred eEEEeeccCCCCcceEe
Q 035971 97 ATIVACGAKGSGKTRVI 113 (614)
Q Consensus 97 ~tI~aYGqTGSGKTyTm 113 (614)
..|+-.|+.|||||+.+
T Consensus 28 ~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46888899999999754
No 414
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=22.12 E-value=25 Score=39.78 Aligned_cols=44 Identities=23% Similarity=0.480 Sum_probs=32.5
Q ss_pred CHHhhccCCCCCHHHHHHHHHHHHhCCCCCCCHHhhhh---------cCCCHHHHHHHH
Q 035971 556 GKEDLKRLKGIGEKRASYILELREESPEPFKNLDDLKD---------IGLSAKQIKGMM 605 (614)
Q Consensus 556 ~~~~L~~l~gig~~~A~~Ii~~R~~~gg~f~~~~dL~~---------~gl~~~~~~~~~ 605 (614)
+.-.|++|||||...|++.. .. | |+++.||.+ .+++.++++.+.
T Consensus 644 e~~~L~qlp~v~~~rar~L~----~~-G-~~s~~dl~~~~~~~l~~~~~~~~~i~~~~~ 696 (720)
T 2zj8_A 644 ELIPLMQLPLVGRRRARALY----NS-G-FRSIEDISQARPEELLKIEGIGVKTVEAIF 696 (720)
T ss_dssp GGGGGTTSTTCCHHHHHHHH----TT-T-CCSHHHHHTCCHHHHHTSTTCCHHHHHHHH
T ss_pred cchhhhhCCCCCHHHHHHHH----Hc-C-CCCHHHHHhCCHHHHHHhHhHHHHHHHHHH
Confidence 33468899999999999985 33 6 999999963 246666666654
No 415
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=22.08 E-value=92 Score=35.02 Aligned_cols=35 Identities=11% Similarity=0.115 Sum_probs=22.2
Q ss_pred HHHHHhCCCCCCCHHhhhh-cCCCHHHHHHHHHHHhh
Q 035971 575 LELREESPEPFKNLDDLKD-IGLSAKQIKGMMKKEME 610 (614)
Q Consensus 575 i~~R~~~gg~f~~~~dL~~-~gl~~~~~~~~~~~~~~ 610 (614)
+..|-.+|- -..+-.|.+ .|++...++++.+.-++
T Consensus 633 l~~rl~~gv-~~e~~~L~qlp~v~~~rar~L~~~G~~ 668 (720)
T 2zj8_A 633 LRVRVKYGI-REELIPLMQLPLVGRRRARALYNSGFR 668 (720)
T ss_dssp HHHHHHHTC-CGGGGGGTTSTTCCHHHHHHHHTTTCC
T ss_pred HHHHHHcCC-CccchhhhhCCCCCHHHHHHHHHcCCC
Confidence 445555533 445667777 67888888887655443
No 416
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=22.03 E-value=21 Score=34.42 Aligned_cols=16 Identities=25% Similarity=0.559 Sum_probs=12.8
Q ss_pred EEEeeccCCCCcceEe
Q 035971 98 TIVACGAKGSGKTRVI 113 (614)
Q Consensus 98 tI~aYGqTGSGKTyTm 113 (614)
.+.-.|++|||||..+
T Consensus 18 ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLI 33 (219)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5667799999999654
No 417
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=22.03 E-value=25 Score=31.14 Aligned_cols=15 Identities=40% Similarity=0.401 Sum_probs=12.3
Q ss_pred EEEeeccCCCCcceE
Q 035971 98 TIVACGAKGSGKTRV 112 (614)
Q Consensus 98 tI~aYGqTGSGKTyT 112 (614)
.|+-.|..|||||+.
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTV 16 (168)
T ss_dssp EEEEESCTTSCHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 477889999999953
No 418
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=21.83 E-value=36 Score=34.47 Aligned_cols=30 Identities=27% Similarity=0.371 Sum_probs=22.2
Q ss_pred hHHHHHHHhcC-C--ceEEEeeccCCCCcceEe
Q 035971 84 VKPLISEVFNG-I--NATIVACGAKGSGKTRVI 113 (614)
Q Consensus 84 v~plV~~vl~G-~--N~tI~aYGqTGSGKTyTm 113 (614)
.-+-++.++.| + ...+.-||++|+|||..+
T Consensus 92 G~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la 124 (324)
T 2z43_A 92 GSQALDGLLAGGIETRTMTEFFGEFGSGKTQLC 124 (324)
T ss_dssp SCHHHHHHTTTSEETTSEEEEEESTTSSHHHHH
T ss_pred CchhHHHhcCCCCCCCcEEEEECCCCCCHhHHH
Confidence 34678888854 2 346888999999999653
No 419
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=21.78 E-value=54 Score=35.28 Aligned_cols=34 Identities=15% Similarity=0.201 Sum_probs=23.7
Q ss_pred hhhHHHHHhhhccCCHHhhccCCCCCHHHHHHHH
Q 035971 542 NSLVQEYLKLLNTGGKEDLKRLKGIGEKRASYIL 575 (614)
Q Consensus 542 ~~l~~~~~~~lN~A~~~~L~~l~gig~~~A~~Ii 575 (614)
..-++.+.-.||+-|.+|+..=.=|.+.+-++|-
T Consensus 369 ~~~~~~~~~ii~smt~~e~~~p~~~~~sr~~ria 402 (443)
T 3dm5_A 369 EERLKKFKVIMDSMTEEELLNPEIINYSRIKRIA 402 (443)
T ss_dssp HHHHHHHHHHHTTSCHHHHHCGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHhcCchhcChHHHHHHH
Confidence 4456677778888888888765556666666664
No 420
>2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A
Probab=21.74 E-value=48 Score=28.28 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=18.8
Q ss_pred hccCCHHhhccCCCCCHHHHHH
Q 035971 552 LNTGGKEDLKRLKGIGEKRASY 573 (614)
Q Consensus 552 lN~A~~~~L~~l~gig~~~A~~ 573 (614)
.--.|.++|..|+|||+.+.++
T Consensus 51 ~~P~t~~eL~~I~Gvg~~K~~~ 72 (103)
T 2e1f_A 51 MRPTTVENVKRIDGVSEGKAAM 72 (103)
T ss_dssp HCCCSHHHHTTSTTCCHHHHHH
T ss_pred hCCCCHHHHhcCCCCCHHHHHH
Confidence 4677999999999999988764
No 421
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=21.68 E-value=25 Score=40.03 Aligned_cols=15 Identities=40% Similarity=0.501 Sum_probs=13.2
Q ss_pred eEEEeeccCCCCcce
Q 035971 97 ATIVACGAKGSGKTR 111 (614)
Q Consensus 97 ~tI~aYGqTGSGKTy 111 (614)
-.++..|+||||||+
T Consensus 156 k~vlv~apTGSGKT~ 170 (677)
T 3rc3_A 156 KIIFHSGPTNSGKTY 170 (677)
T ss_dssp EEEEEECCTTSSHHH
T ss_pred CEEEEEcCCCCCHHH
Confidence 357899999999998
No 422
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=21.56 E-value=20 Score=33.31 Aligned_cols=16 Identities=38% Similarity=0.488 Sum_probs=12.7
Q ss_pred EEEeeccCCCCcceEe
Q 035971 98 TIVACGAKGSGKTRVI 113 (614)
Q Consensus 98 tI~aYGqTGSGKTyTm 113 (614)
.|--.|++|||||+.+
T Consensus 8 ~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 8 VIGIAGGTASGKTTLA 23 (211)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4666799999999654
No 423
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=21.52 E-value=26 Score=32.31 Aligned_cols=16 Identities=31% Similarity=0.522 Sum_probs=13.3
Q ss_pred eEEEeeccCCCCcceE
Q 035971 97 ATIVACGAKGSGKTRV 112 (614)
Q Consensus 97 ~tI~aYGqTGSGKTyT 112 (614)
..|+..|..|||||+.
T Consensus 16 ~~I~l~G~~GsGKsT~ 31 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQ 31 (203)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 4688899999999953
No 424
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=21.48 E-value=25 Score=33.33 Aligned_cols=16 Identities=50% Similarity=0.596 Sum_probs=13.2
Q ss_pred eEEEeeccCCCCcceE
Q 035971 97 ATIVACGAKGSGKTRV 112 (614)
Q Consensus 97 ~tI~aYGqTGSGKTyT 112 (614)
..|+..|..|||||+.
T Consensus 8 ~~I~l~G~~GsGKsT~ 23 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTV 23 (227)
T ss_dssp CEEEEEECTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 3588899999999954
No 425
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=21.47 E-value=25 Score=31.70 Aligned_cols=15 Identities=33% Similarity=0.536 Sum_probs=12.7
Q ss_pred EEEeeccCCCCcceE
Q 035971 98 TIVACGAKGSGKTRV 112 (614)
Q Consensus 98 tI~aYGqTGSGKTyT 112 (614)
.|+-.|..|||||+.
T Consensus 8 ~I~l~G~~GsGKsT~ 22 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQ 22 (194)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578889999999953
No 426
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=21.41 E-value=26 Score=32.65 Aligned_cols=14 Identities=43% Similarity=0.591 Sum_probs=11.7
Q ss_pred EEeeccCCCCcceE
Q 035971 99 IVACGAKGSGKTRV 112 (614)
Q Consensus 99 I~aYGqTGSGKTyT 112 (614)
|+..|+.|||||+.
T Consensus 3 I~l~G~~GsGKsT~ 16 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 66789999999854
No 427
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=21.37 E-value=51 Score=39.79 Aligned_cols=27 Identities=30% Similarity=0.581 Sum_probs=19.9
Q ss_pred HHHHHHhcCCceEEEeeccCCCCcceE
Q 035971 86 PLISEVFNGINATIVACGAKGSGKTRV 112 (614)
Q Consensus 86 plV~~vl~G~N~tI~aYGqTGSGKTyT 112 (614)
.++.++-.|...-++..|+||||||..
T Consensus 614 ~il~~~~~g~p~d~ll~~~TGsGKT~v 640 (1151)
T 2eyq_A 614 AVLSDMCQPLAMDRLVCGDVGFGKTEV 640 (1151)
T ss_dssp HHHHHHHSSSCCEEEEECCCCTTTHHH
T ss_pred HHHHHHhcCCcCcEEEECCCCCCHHHH
Confidence 344444457766789999999999965
No 428
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=21.29 E-value=26 Score=33.27 Aligned_cols=16 Identities=38% Similarity=0.524 Sum_probs=13.2
Q ss_pred EEEeeccCCCCcceEe
Q 035971 98 TIVACGAKGSGKTRVI 113 (614)
Q Consensus 98 tI~aYGqTGSGKTyTm 113 (614)
-++-.|..|||||+.+
T Consensus 7 i~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4678899999999764
No 429
>2kv2_A Bloom syndrome protein; HRDC domain, disease mutation, DNA replicati binding, nucleotide-binding, nucleus, gene regulation; NMR {Homo sapiens}
Probab=21.22 E-value=48 Score=27.01 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=18.3
Q ss_pred hccCCHHhhccCCCCCHHHHHH
Q 035971 552 LNTGGKEDLKRLKGIGEKRASY 573 (614)
Q Consensus 552 lN~A~~~~L~~l~gig~~~A~~ 573 (614)
..-.|.++|..|+|||+.+.++
T Consensus 43 ~~P~t~~eL~~i~Gvg~~k~~~ 64 (85)
T 2kv2_A 43 SLSSDPEVLLQIDGVTEDKLEK 64 (85)
T ss_dssp HCCSCHHHHHTSSSCCHHHHHH
T ss_pred hCCCCHHHHhhCCCCCHHHHHH
Confidence 5678999999999999876553
No 430
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=21.04 E-value=58 Score=34.08 Aligned_cols=21 Identities=24% Similarity=0.574 Sum_probs=17.7
Q ss_pred cCCceEEEeeccCCCCcceEe
Q 035971 93 NGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 93 ~G~N~tI~aYGqTGSGKTyTm 113 (614)
.|.-..|+.+|+.|+|||+..
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~ 41 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIA 41 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHH
Confidence 577778999999999999754
No 431
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=21.00 E-value=27 Score=32.85 Aligned_cols=15 Identities=33% Similarity=0.558 Sum_probs=12.7
Q ss_pred eEEEeeccCCCCcce
Q 035971 97 ATIVACGAKGSGKTR 111 (614)
Q Consensus 97 ~tI~aYGqTGSGKTy 111 (614)
..|+..|..|||||+
T Consensus 5 ~~I~l~G~~GsGKsT 19 (220)
T 1aky_A 5 IRMVLIGPPGAGKGT 19 (220)
T ss_dssp CEEEEECCTTSSHHH
T ss_pred cEEEEECCCCCCHHH
Confidence 357889999999995
No 432
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=20.96 E-value=26 Score=31.86 Aligned_cols=16 Identities=38% Similarity=0.534 Sum_probs=13.2
Q ss_pred eEEEeeccCCCCcceE
Q 035971 97 ATIVACGAKGSGKTRV 112 (614)
Q Consensus 97 ~tI~aYGqTGSGKTyT 112 (614)
..|+-.|..|||||+.
T Consensus 10 ~~I~l~G~~GsGKsT~ 25 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQ 25 (196)
T ss_dssp CEEEEEECTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 3678889999999953
No 433
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=20.91 E-value=22 Score=34.51 Aligned_cols=16 Identities=31% Similarity=0.615 Sum_probs=12.7
Q ss_pred EEEeeccCCCCcceEe
Q 035971 98 TIVACGAKGSGKTRVI 113 (614)
Q Consensus 98 tI~aYGqTGSGKTyTm 113 (614)
.+.-.|++|||||+.|
T Consensus 33 ~~~iiG~nGsGKSTLl 48 (235)
T 3tif_A 33 FVSIMGPSGSGKSTML 48 (235)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4567799999999654
No 434
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=20.88 E-value=50 Score=34.00 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=0.0
Q ss_pred HHHHHHhcC---CceEEEeeccCCCCcc
Q 035971 86 PLISEVFNG---INATIVACGAKGSGKT 110 (614)
Q Consensus 86 plV~~vl~G---~N~tI~aYGqTGSGKT 110 (614)
+-++.++.| ....+.-+|+.|||||
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKT 145 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKT 145 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHH
No 435
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=20.86 E-value=39 Score=40.22 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=16.5
Q ss_pred HHhcCCceEEEeeccCCCCcceE
Q 035971 90 EVFNGINATIVACGAKGSGKTRV 112 (614)
Q Consensus 90 ~vl~G~N~tI~aYGqTGSGKTyT 112 (614)
.++.|.+ ++..++||||||..
T Consensus 97 ~l~~g~~--vLV~apTGSGKTlv 117 (1010)
T 2xgj_A 97 CIDRGES--VLVSAHTSAGKTVV 117 (1010)
T ss_dssp HHHHTCE--EEEECCTTSCHHHH
T ss_pred HHHcCCC--EEEECCCCCChHHH
Confidence 4456765 78889999999975
No 436
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=20.82 E-value=22 Score=36.87 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=19.9
Q ss_pred HhcCCceEEEeeccCCCCcceEe
Q 035971 91 VFNGINATIVACGAKGSGKTRVI 113 (614)
Q Consensus 91 vl~G~N~tI~aYGqTGSGKTyTm 113 (614)
+..|++..|...|.+|+|||..+
T Consensus 32 ~~~~~~~~I~vvG~~g~GKSTLl 54 (361)
T 2qag_A 32 VKKGFEFTLMVVGESGLGKSTLI 54 (361)
T ss_dssp HHHCCEECEEECCCTTSCHHHHH
T ss_pred ecCCCCEEEEEEcCCCCCHHHHH
Confidence 56799999999999999999543
No 437
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=20.78 E-value=29 Score=33.88 Aligned_cols=16 Identities=31% Similarity=0.522 Sum_probs=13.6
Q ss_pred eEEEeeccCCCCcceE
Q 035971 97 ATIVACGAKGSGKTRV 112 (614)
Q Consensus 97 ~tI~aYGqTGSGKTyT 112 (614)
..|+..|..|||||+.
T Consensus 5 ~lIvl~G~pGSGKSTl 20 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTF 20 (260)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred EEEEEEcCCCCCHHHH
Confidence 4688999999999964
No 438
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=20.54 E-value=23 Score=32.32 Aligned_cols=17 Identities=29% Similarity=0.448 Sum_probs=14.0
Q ss_pred eEEEeeccCCCCcceEe
Q 035971 97 ATIVACGAKGSGKTRVI 113 (614)
Q Consensus 97 ~tI~aYGqTGSGKTyTm 113 (614)
..+.-.|+.|+|||..+
T Consensus 34 e~v~L~G~nGaGKTTLl 50 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLT 50 (158)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 46677899999999765
No 439
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=20.52 E-value=42 Score=40.33 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=18.9
Q ss_pred HHHHHhcCCceEEEeeccCCCCcceE
Q 035971 87 LISEVFNGINATIVACGAKGSGKTRV 112 (614)
Q Consensus 87 lV~~vl~G~N~tI~aYGqTGSGKTyT 112 (614)
.+..++.|.+ +++.++||||||..
T Consensus 86 ai~~il~g~d--vlv~ApTGSGKTl~ 109 (1104)
T 4ddu_A 86 WAKRIVQGKS--FTMVAPTGVGKTTF 109 (1104)
T ss_dssp HHHHHTTTCC--EEECCSTTCCHHHH
T ss_pred HHHHHHcCCC--EEEEeCCCCcHHHH
Confidence 4556778876 57889999999983
No 440
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=20.46 E-value=1.1e+02 Score=25.62 Aligned_cols=38 Identities=16% Similarity=0.224 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHhhhh-cCCCHHHHHHHHHH
Q 035971 567 GEKRASYILELREESPEPFKNLDDLKD-IGLSAKQIKGMMKK 607 (614)
Q Consensus 567 g~~~A~~Ii~~R~~~gg~f~~~~dL~~-~gl~~~~~~~~~~~ 607 (614)
-..++++|-++|+.. | + +..+|.+ +|++...+.+|.++
T Consensus 19 ~~~~g~~lr~~R~~~-g-l-tq~elA~~~gis~~~is~~E~G 57 (114)
T 3vk0_A 19 RAVLAYNMRLFRVNK-G-W-SQEELARQCGLDRTYVSAVERK 57 (114)
T ss_dssp HHHHHHHHHHHHHHT-T-C-CHHHHHHHHTCCHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHc-C-C-CHHHHHHHHCcCHHHHHHHHcC
Confidence 346778888888888 3 4 7888888 88888888887654
No 441
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=20.38 E-value=33 Score=31.22 Aligned_cols=17 Identities=35% Similarity=0.534 Sum_probs=13.7
Q ss_pred ceEEEeeccCCCCcceE
Q 035971 96 NATIVACGAKGSGKTRV 112 (614)
Q Consensus 96 N~tI~aYGqTGSGKTyT 112 (614)
...|+..|..|||||+.
T Consensus 13 ~~~i~l~G~~GsGKsT~ 29 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTI 29 (186)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 35678889999999964
No 442
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=20.28 E-value=36 Score=40.88 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=18.0
Q ss_pred HHHHHhcCCceEEEeeccCCCCcceE
Q 035971 87 LISEVFNGINATIVACGAKGSGKTRV 112 (614)
Q Consensus 87 lV~~vl~G~N~tI~aYGqTGSGKTyT 112 (614)
.+..++.|.+ ++..|+||||||..
T Consensus 192 AI~~i~~g~d--vLV~ApTGSGKTlv 215 (1108)
T 3l9o_A 192 AISCIDRGES--VLVSAHTSAGKTVV 215 (1108)
T ss_dssp HHHHHTTTCC--EEEECCSSSHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCChHHH
Confidence 3445577765 58899999999965
No 443
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=20.27 E-value=28 Score=32.44 Aligned_cols=14 Identities=36% Similarity=0.563 Sum_probs=11.7
Q ss_pred EEeeccCCCCcceE
Q 035971 99 IVACGAKGSGKTRV 112 (614)
Q Consensus 99 I~aYGqTGSGKTyT 112 (614)
|+..|+.|||||+.
T Consensus 3 I~l~G~~GsGKsT~ 16 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 66789999999854
No 444
>1wud_A ATP-dependent DNA helicase RECQ; DNA-binding domain, HRDC, hydrolase; 2.20A {Escherichia coli} SCOP: a.60.8.1
Probab=20.27 E-value=51 Score=27.11 Aligned_cols=22 Identities=9% Similarity=0.202 Sum_probs=18.3
Q ss_pred hccCCHHhhccCCCCCHHHHHH
Q 035971 552 LNTGGKEDLKRLKGIGEKRASY 573 (614)
Q Consensus 552 lN~A~~~~L~~l~gig~~~A~~ 573 (614)
..-.|.++|..|+|||+.+.++
T Consensus 49 ~~P~t~~eL~~i~Gvg~~k~~~ 70 (89)
T 1wud_A 49 QMPITASEMLSVNGVGMRKLER 70 (89)
T ss_dssp HCCCSHHHHHTSTTCCHHHHHH
T ss_pred hCCCCHHHHhhCCCCCHHHHHH
Confidence 4678999999999999977653
No 445
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=20.26 E-value=39 Score=37.99 Aligned_cols=32 Identities=19% Similarity=0.237 Sum_probs=21.2
Q ss_pred HHHhCCCCCCCHHhhhh-cCCCHHHHHHHHHHHh
Q 035971 577 LREESPEPFKNLDDLKD-IGLSAKQIKGMMKKEM 609 (614)
Q Consensus 577 ~R~~~gg~f~~~~dL~~-~gl~~~~~~~~~~~~~ 609 (614)
.|-.+|- -..+-+|.+ -|++...++.+.++-+
T Consensus 646 ~rl~~gv-~~e~~~L~qlp~i~~~rar~L~~~g~ 678 (715)
T 2va8_A 646 LRVRDGI-KEELLELVQISGVGRKRARLLYNNGI 678 (715)
T ss_dssp HHHHHTC-CGGGHHHHTSTTCCHHHHHHHHHTTC
T ss_pred HHHHcCC-ChhhcchhhCCCCCHHHHHHHHHcCC
Confidence 3334432 455677788 6899999888876544
No 446
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=20.24 E-value=36 Score=35.08 Aligned_cols=15 Identities=33% Similarity=0.523 Sum_probs=13.0
Q ss_pred eEEEeeccCCCCcce
Q 035971 97 ATIVACGAKGSGKTR 111 (614)
Q Consensus 97 ~tI~aYGqTGSGKTy 111 (614)
-.|+..|+||||||.
T Consensus 6 ~~i~i~GptGsGKTt 20 (323)
T 3crm_A 6 PAIFLMGPTAAGKTD 20 (323)
T ss_dssp EEEEEECCTTSCHHH
T ss_pred cEEEEECCCCCCHHH
Confidence 468899999999994
No 447
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=20.23 E-value=29 Score=33.49 Aligned_cols=14 Identities=43% Similarity=0.631 Sum_probs=12.0
Q ss_pred EEEeeccCCCCcce
Q 035971 98 TIVACGAKGSGKTR 111 (614)
Q Consensus 98 tI~aYGqTGSGKTy 111 (614)
.||..|+.||||++
T Consensus 31 iI~llGpPGsGKgT 44 (217)
T 3umf_A 31 VIFVLGGPGSGKGT 44 (217)
T ss_dssp EEEEECCTTCCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 57889999999974
No 448
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=20.21 E-value=23 Score=38.93 Aligned_cols=18 Identities=28% Similarity=0.505 Sum_probs=14.6
Q ss_pred ceEEEeeccCCCCcceEe
Q 035971 96 NATIVACGAKGSGKTRVI 113 (614)
Q Consensus 96 N~tI~aYGqTGSGKTyTm 113 (614)
...++-||++|+|||+++
T Consensus 108 g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp SCEEEEESSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 346889999999999654
No 449
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=20.17 E-value=28 Score=35.45 Aligned_cols=17 Identities=35% Similarity=0.569 Sum_probs=14.7
Q ss_pred eEEEeeccCCCCcceEe
Q 035971 97 ATIVACGAKGSGKTRVI 113 (614)
Q Consensus 97 ~tI~aYGqTGSGKTyTm 113 (614)
..|+..|++|+|||+|+
T Consensus 105 ~vi~ivG~~GsGKTTl~ 121 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSC 121 (306)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 46888899999999886
No 450
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=20.15 E-value=29 Score=33.11 Aligned_cols=13 Identities=38% Similarity=0.639 Sum_probs=11.3
Q ss_pred EEeeccCCCCcce
Q 035971 99 IVACGAKGSGKTR 111 (614)
Q Consensus 99 I~aYGqTGSGKTy 111 (614)
|+-.|+.||||++
T Consensus 3 Iil~GpPGsGKgT 15 (206)
T 3sr0_A 3 LVFLGPPGAGKGT 15 (206)
T ss_dssp EEEECSTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 6788999999974
No 451
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=20.10 E-value=26 Score=39.45 Aligned_cols=24 Identities=29% Similarity=0.510 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCceEEEeeccCCCCcc
Q 035971 85 KPLISEVFNGINATIVACGAKGSGKT 110 (614)
Q Consensus 85 ~plV~~vl~G~N~tI~aYGqTGSGKT 110 (614)
..+++.+++|.| ++..|+||||||
T Consensus 31 ~~~i~~i~~~~~--~lv~apTGsGKT 54 (702)
T 2p6r_A 31 AEAVEKVFSGKN--LLLAMPTAAGKT 54 (702)
T ss_dssp HHHHHHHTTCSC--EEEECSSHHHHH
T ss_pred HHHHHHHhCCCc--EEEEcCCccHHH
Done!