Query 035973
Match_columns 316
No_of_seqs 161 out of 1546
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 08:08:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035973.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035973hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0819 Annexin [Intracellular 100.0 8.1E-93 1.8E-97 629.0 29.7 315 1-315 6-321 (321)
2 KOG0819 Annexin [Intracellular 100.0 6.9E-54 1.5E-58 380.6 17.2 227 4-238 81-319 (321)
3 PF00191 Annexin: Annexin; In 99.7 5E-18 1.1E-22 120.6 7.8 66 15-80 1-66 (66)
4 PF00191 Annexin: Annexin; In 99.7 3.4E-17 7.4E-22 116.3 7.6 66 170-235 1-66 (66)
5 smart00335 ANX Annexin repeats 99.5 3.7E-14 8E-19 96.1 5.9 53 28-80 1-53 (53)
6 smart00335 ANX Annexin repeats 99.4 4.6E-13 9.9E-18 90.7 6.0 53 258-310 1-53 (53)
7 PF05664 DUF810: Protein of un 65.6 1.7E+02 0.0037 30.2 14.6 84 14-97 151-248 (677)
8 COG5173 SEC6 Exocyst complex s 57.0 1.7E+02 0.0036 29.4 11.2 79 102-186 292-372 (742)
9 PF13758 Prefoldin_3: Prefoldi 51.7 46 0.00099 25.3 5.2 45 7-51 25-74 (99)
10 PF14003 YlbE: YlbE-like prote 49.3 40 0.00086 23.5 4.2 32 193-224 17-48 (65)
11 COG5118 BDP1 Transcription ini 45.9 71 0.0015 30.2 6.5 44 14-60 370-413 (507)
12 cd00171 Sec7 Sec7 domain; Doma 43.8 94 0.002 26.3 6.7 54 10-67 31-87 (185)
13 COG5173 SEC6 Exocyst complex s 42.0 1.4E+02 0.0031 29.8 8.2 50 182-235 438-495 (742)
14 PF14003 YlbE: YlbE-like prote 36.4 44 0.00096 23.2 2.8 36 36-71 15-50 (65)
15 PF00249 Myb_DNA-binding: Myb- 35.9 1.1E+02 0.0025 19.2 5.5 34 15-48 7-42 (48)
16 PF13720 Acetyltransf_11: Udp 34.6 57 0.0012 23.8 3.4 21 40-60 27-47 (83)
17 PF15173 FAM180: FAM180 family 34.0 2.3E+02 0.0051 22.7 6.9 69 183-269 59-127 (137)
18 smart00717 SANT SANT SWI3, AD 33.7 1.1E+02 0.0024 18.4 4.7 35 15-49 7-42 (49)
19 COG5118 BDP1 Transcription ini 33.4 51 0.0011 31.1 3.6 58 170-227 371-428 (507)
20 KOG2286 Exocyst complex subuni 32.8 4.6E+02 0.0099 27.1 10.5 207 85-314 235-450 (667)
21 COG5126 FRQ1 Ca2+-binding prot 31.7 3E+02 0.0065 22.8 8.3 86 37-126 10-102 (160)
22 cd00167 SANT 'SWI3, ADA2, N-Co 30.3 1.2E+02 0.0027 17.9 4.8 34 15-48 5-39 (45)
23 PRK10969 DNA polymerase III su 29.8 1.2E+02 0.0027 21.6 4.2 36 273-308 17-53 (75)
24 PF13766 ECH_C: 2-enoyl-CoA Hy 29.4 64 0.0014 25.2 3.2 49 188-236 35-91 (118)
25 KOG0859 Synaptobrevin/VAMP-lik 26.8 1.5E+02 0.0033 25.5 5.0 47 197-243 76-123 (217)
26 cd00649 catalase_peroxidase_1 26.5 39 0.00085 32.4 1.7 38 1-38 197-238 (409)
27 PF13921 Myb_DNA-bind_6: Myb-l 23.3 1.4E+02 0.0029 19.7 3.5 38 15-55 4-41 (60)
28 PF13043 DUF3903: Domain of un 22.2 80 0.0017 19.2 1.8 17 200-216 9-25 (40)
29 KOG0859 Synaptobrevin/VAMP-lik 21.4 4.3E+02 0.0092 22.9 6.7 46 113-158 75-120 (217)
30 PRK10236 hypothetical protein; 21.2 5.9E+02 0.013 22.6 8.6 65 201-266 63-139 (237)
31 PF11159 DUF2939: Protein of u 21.0 1.8E+02 0.0039 21.4 4.1 47 241-295 11-57 (95)
32 KOG2027 Spindle pole body prot 20.9 1.2E+02 0.0027 29.0 3.8 26 274-299 98-123 (388)
33 TIGR03031 cas_csx12 CRISPR-ass 20.2 2.1E+02 0.0045 29.0 5.3 81 30-114 238-321 (802)
No 1
>KOG0819 consensus Annexin [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.1e-93 Score=628.99 Aligned_cols=315 Identities=46% Similarity=0.703 Sum_probs=311.4
Q ss_pred CccccCCCCCCChHHHHHHHHHhhhcCCCCHHHHHHHHcCCCHHHHHHHHHHhHhhhcchHHHhhhhhcchhHHHHHHHH
Q 035973 1 MSTLTVPAQVPSVTEDCEQLRKAFEGWGTNEQLIISILAHRNAAQRKLIRQTYADTYGEDLLKSLDKELTNDFERVVMLW 80 (316)
Q Consensus 1 ~~~~~~~~~~~~~~~da~~L~~A~~g~gtde~~li~il~~rs~~q~~~i~~~Y~~~~~~~L~~~l~~e~sg~~~~ll~~l 80 (316)
|++.++|.++|+|..||+.|++||+||||||++||+||++|||+||++|+++|+..||++|.++|++|+||+|++++++|
T Consensus 6 ~~~t~~~~~~f~p~~DAe~L~kA~kG~Gtde~aII~iL~~Rsn~QRq~I~~ayk~~ygkDLi~~Lk~ELsG~Fe~~i~al 85 (321)
T KOG0819|consen 6 MAGTVVPAPVFDPVQDAEQLRKAMKGFGTDEQAIIDILTHRSNAQRQLIRAAYKTMYGKDLIKDLKSELSGDFERAIVAL 85 (321)
T ss_pred CCcccCCCCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHhHHHHHHHHHHhCccHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhhccCCCChhHHHHHhccCCHHHHHHHHHHHHHHhcccHHHHhhccCcchHHHHHHHHHhhhccCC
Q 035973 81 TLDPAERDAFLANEATKRWTSSNQVLMEIACTRSSKQLLEARQAYHARFKKSLEEDVGYHTNGDFRKLLLPLVTAYRYEG 160 (316)
Q Consensus 81 ~~~~~~~da~~L~~A~kg~gtde~~lieIl~~rs~~~l~~i~~~Y~~~~~~~L~~~i~~~~sg~~~~~l~~ll~~~r~~~ 160 (316)
+.+|+++||..|++||+|.||||++||||+|+|||.|+++|+++|+..|+++|+++|.+++||+|+++|+.|+++.|+++
T Consensus 86 ~~~p~~~DA~~l~~amkg~gtde~vlIEIlcTRT~~el~~i~~aY~~~y~~sLEeDI~s~TSG~frklLv~L~~~~R~e~ 165 (321)
T KOG0819|consen 86 MKPPAEYDAKELKKAMKGLGTDEKVLIEILCTRTNEELRAIRQAYQELYKKSLEEDIASDTSGDFRKLLVSLVQGNRDEG 165 (321)
T ss_pred cCCHHHhHHHHHHHHHhccCcchhhheeeeccCCHHHHHHHHHHHHHHHcccHHHHhhhccCchHHHHHHHHHhcCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred chhcHhHHHHHHHHHHhhccc-CCCChhHHHHHHhhCCHHHHHHHHHHHHhhhCCCHHHHhccCCchhHHHHHHHHHHhc
Q 035973 161 DEVNITLAKSEAKILHEKISN-KTYNDEDLIRILATRSKAQINATLNQYKNVYGNDIDQDLEADPKDEYLDLLRATVQCL 239 (316)
Q Consensus 161 ~~vd~~~~~~dA~~L~~A~~~-~gtde~~li~il~~rs~~~l~~I~~~Y~~~~g~~L~~~I~~~~sg~~~~~ll~l~~~~ 239 (316)
..||..+|..||+.|++|+++ +|||+..|++||++||..||+.++++|++.+|+++++.|+++++|+|+++|+++++|.
T Consensus 166 ~~vd~~la~~dA~~L~~Age~k~gtde~~~~~Il~tRs~~qL~~vf~~y~~~~g~diek~I~~e~~gd~~~~llaiv~c~ 245 (321)
T KOG0819|consen 166 DRVDDALAKQDAQDLYEAGEKKWGTDEDKFIRILTTRSKAQLRLVFEEYQRISGKDIEKSIKEEFSGDFEKLLLAIVKCI 245 (321)
T ss_pred CCcCHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhCCHHHHHHHHHHHHHhcchhHHHHHhhccCchHHHHHHHHHHHH
Confidence 899999999999999999998 8999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHhhhcCCCChhhHHHHHHhcCHHHHHHHHHHHHhhcCCchHHHHhhcCcHHHHHHHHHhhcCCC
Q 035973 240 VRPEHYFEKILRLAINKQGTDEGALTRVVTTRAEVDLKVIKDEYQRRNSVPLDRAVVKDTSGDYEKMLLALLGHGD 315 (316)
Q Consensus 240 ~~~~~~~a~~l~~a~~g~gtd~~~l~ril~~r~~~~l~~i~~~Y~~~yg~~L~~~i~~~~~G~~~~~Ll~l~~~~~ 315 (316)
+|||.|||+.||.||+|.|||+.+||||+++|+|+||..|+.+|+++||+||..+|+++|||||+++|++|+++++
T Consensus 246 ~n~~~yFA~~L~~amkg~GTdd~~LiRI~VsRsEiDl~~Ik~ef~~~Y~ksL~~~I~~dtsGdY~~~LlaL~g~~~ 321 (321)
T KOG0819|consen 246 RNPPAYFAERLRKAMKGLGTDDKTLIRIVVSRSEIDLLDIKEEFQRKYGKSLYSAIKGDTSGDYKKALLALLGGDD 321 (321)
T ss_pred cCHHHHHHHHHHHHHhccCCCccceeeeeeeHHHhhHHHHHHHHHHHhCccHHHHHhhhccchHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999874
No 2
>KOG0819 consensus Annexin [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.9e-54 Score=380.61 Aligned_cols=227 Identities=27% Similarity=0.436 Sum_probs=218.2
Q ss_pred ccCCCCCCChHHHHHHHHHhhhcCCCCHHHHHHHHcCCCHHHHHHHHHHhHhhhcchHHHhhhhhcchhHHHHHHHHcCC
Q 035973 4 LTVPAQVPSVTEDCEQLRKAFEGWGTNEQLIISILAHRNAAQRKLIRQTYADTYGEDLLKSLDKELTNDFERVVMLWTLD 83 (316)
Q Consensus 4 ~~~~~~~~~~~~da~~L~~A~~g~gtde~~li~il~~rs~~q~~~i~~~Y~~~~~~~L~~~l~~e~sg~~~~ll~~l~~~ 83 (316)
+++.+..||+++||++|++||+|+||||.+||||||+|||.|+++|+++|+..|+++|+++|.+++||+|+++|+.++.+
T Consensus 81 ~i~al~~~p~~~DA~~l~~amkg~gtde~vlIEIlcTRT~~el~~i~~aY~~~y~~sLEeDI~s~TSG~frklLv~L~~~ 160 (321)
T KOG0819|consen 81 AIVALMKPPAEYDAKELKKAMKGLGTDEKVLIEILCTRTNEELRAIRQAYQELYKKSLEEDIASDTSGDFRKLLVSLVQG 160 (321)
T ss_pred HHHHHcCCHHHhHHHHHHHHHhccCcchhhheeeeccCCHHHHHHHHHHHHHHHcccHHHHhhhccCchHHHHHHHHHhc
Confidence 45667789999999999999999999999999999999999999999999999999999999999999999999999842
Q ss_pred -----------cHHHHHHHHHHhhcc-CCCChhHHHHHhccCCHHHHHHHHHHHHHHhcccHHHHhhccCcchHHHHHHH
Q 035973 84 -----------PAERDAFLANEATKR-WTSSNQVLMEIACTRSSKQLLEARQAYHARFKKSLEEDVGYHTNGDFRKLLLP 151 (316)
Q Consensus 84 -----------~~~~da~~L~~A~kg-~gtde~~lieIl~~rs~~~l~~i~~~Y~~~~~~~L~~~i~~~~sg~~~~~l~~ 151 (316)
.+..||..|++|..+ +|||+..++.||++||..|++.+.+.|+..+|+++++.|+.+++|+|+.+|++
T Consensus 161 ~R~e~~~vd~~la~~dA~~L~~Age~k~gtde~~~~~Il~tRs~~qL~~vf~~y~~~~g~diek~I~~e~~gd~~~~lla 240 (321)
T KOG0819|consen 161 NRDEGDRVDDALAKQDAQDLYEAGEKKWGTDEDKFIRILTTRSKAQLRLVFEEYQRISGKDIEKSIKEEFSGDFEKLLLA 240 (321)
T ss_pred CCccCCCcCHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhCCHHHHHHHHHHHHHhcchhHHHHHhhccCchHHHHHHH
Confidence 378999999999974 78999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCCchhcHhHHHHHHHHHHhhcccCCCChhHHHHHHhhCCHHHHHHHHHHHHhhhCCCHHHHhccCCchhHHHH
Q 035973 152 LVTAYRYEGDEVNITLAKSEAKILHEKISNKTYNDEDLIRILATRSKAQINATLNQYKNVYGNDIDQDLEADPKDEYLDL 231 (316)
Q Consensus 152 ll~~~r~~~~~vd~~~~~~dA~~L~~A~~~~gtde~~li~il~~rs~~~l~~I~~~Y~~~~g~~L~~~I~~~~sg~~~~~ 231 (316)
++.|.+++ +.++|+.||.||+|.|||+.+||||+++||+.+|..|+.+|+++||++|..+|+.++||+|+++
T Consensus 241 iv~c~~n~--------~~yFA~~L~~amkg~GTdd~~LiRI~VsRsEiDl~~Ik~ef~~~Y~ksL~~~I~~dtsGdY~~~ 312 (321)
T KOG0819|consen 241 IVKCIRNP--------PAYFAERLRKAMKGLGTDDKTLIRIVVSRSEIDLLDIKEEFQRKYGKSLYSAIKGDTSGDYKKA 312 (321)
T ss_pred HHHHHcCH--------HHHHHHHHHHHHhccCCCccceeeeeeeHHHhhHHHHHHHHHHHhCccHHHHHhhhccchHHHH
Confidence 99999887 7899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 035973 232 LRATVQC 238 (316)
Q Consensus 232 ll~l~~~ 238 (316)
|++|+.+
T Consensus 313 LlaL~g~ 319 (321)
T KOG0819|consen 313 LLALLGG 319 (321)
T ss_pred HHHHhCC
Confidence 9999865
No 3
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=99.75 E-value=5e-18 Score=120.63 Aligned_cols=66 Identities=41% Similarity=0.771 Sum_probs=63.3
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHcCCCHHHHHHHHHHhHhhhcchHHHhhhhhcchhHHHHHHHH
Q 035973 15 EDCEQLRKAFEGWGTNEQLIISILAHRNAAQRKLIRQTYADTYGEDLLKSLDKELTNDFERVVMLW 80 (316)
Q Consensus 15 ~da~~L~~A~~g~gtde~~li~il~~rs~~q~~~i~~~Y~~~~~~~L~~~l~~e~sg~~~~ll~~l 80 (316)
+||+.|++|++|+|+|+..+++|+++||+.|++.|+++|+..||++|+++|++++||+|++++++|
T Consensus 1 ~DA~~l~~a~~~~g~de~~li~Il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~~e~sGd~~~~Ll~l 66 (66)
T PF00191_consen 1 YDAELLHAALKGWGTDEDVLIEILCTRSPAQLRAIKQAYKKKYGKDLEEDIKKETSGDFEKLLLAL 66 (66)
T ss_dssp HHHHHHHHHHSSSSSTHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHSTHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCChhHhhhHHhhhcccccceeehhhhhhhHHHHHHHHHHhCCHHHHHHHHhC
Confidence 599999999999999999999999999999999999999999999999999999999999999875
No 4
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=99.71 E-value=3.4e-17 Score=116.29 Aligned_cols=66 Identities=33% Similarity=0.573 Sum_probs=63.3
Q ss_pred HHHHHHHhhcccCCCChhHHHHHHhhCCHHHHHHHHHHHHhhhCCCHHHHhccCCchhHHHHHHHH
Q 035973 170 SEAKILHEKISNKTYNDEDLIRILATRSKAQINATLNQYKNVYGNDIDQDLEADPKDEYLDLLRAT 235 (316)
Q Consensus 170 ~dA~~L~~A~~~~gtde~~li~il~~rs~~~l~~I~~~Y~~~~g~~L~~~I~~~~sg~~~~~ll~l 235 (316)
+||+.|++|++|+|+|+..+++||++||+.|+++|+++|++.||++|.++|+++++|+|+++|++|
T Consensus 1 ~DA~~l~~a~~~~g~de~~li~Il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~~e~sGd~~~~Ll~l 66 (66)
T PF00191_consen 1 YDAELLHAALKGWGTDEDVLIEILCTRSPAQLRAIKQAYKKKYGKDLEEDIKKETSGDFEKLLLAL 66 (66)
T ss_dssp HHHHHHHHHHSSSSSTHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHSTHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCChhHhhhHHhhhcccccceeehhhhhhhHHHHHHHHHHhCCHHHHHHHHhC
Confidence 589999999999999999999999999999999999999999999999999999999999999875
No 5
>smart00335 ANX Annexin repeats.
Probab=99.50 E-value=3.7e-14 Score=96.09 Aligned_cols=53 Identities=40% Similarity=0.699 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHhHhhhcchHHHhhhhhcchhHHHHHHHH
Q 035973 28 GTNEQLIISILAHRNAAQRKLIRQTYADTYGEDLLKSLDKELTNDFERVVMLW 80 (316)
Q Consensus 28 gtde~~li~il~~rs~~q~~~i~~~Y~~~~~~~L~~~l~~e~sg~~~~ll~~l 80 (316)
||||+.|++|+++|++.||+.|+++|+..||++|.++|++++||+|++++++|
T Consensus 1 gtde~~l~~il~~rs~~~~~~i~~~Y~~~~~~~L~~~i~~e~sG~~~~~l~~l 53 (53)
T smart00335 1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIKSETSGDFEKLLLAL 53 (53)
T ss_pred CCCHHHHHHHHHcCCHHHHHHHHHHHHHHhCccHHHHHHHhcChHHHHHHHhC
Confidence 69999999999999999999999999999999999999999999999998864
No 6
>smart00335 ANX Annexin repeats.
Probab=99.41 E-value=4.6e-13 Score=90.70 Aligned_cols=53 Identities=42% Similarity=0.741 Sum_probs=51.4
Q ss_pred CCChhhHHHHHHhcCHHHHHHHHHHHHhhcCCchHHHHhhcCcHHHHHHHHHh
Q 035973 258 GTDEGALTRVVTTRAEVDLKVIKDEYQRRNSVPLDRAVVKDTSGDYEKMLLAL 310 (316)
Q Consensus 258 gtd~~~l~ril~~r~~~~l~~i~~~Y~~~yg~~L~~~i~~~~~G~~~~~Ll~l 310 (316)
|||+..|++|+++|++.|+.+|+.+|++.||++|.++|+++++|+|+++|++|
T Consensus 1 gtde~~l~~il~~rs~~~~~~i~~~Y~~~~~~~L~~~i~~e~sG~~~~~l~~l 53 (53)
T smart00335 1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIKSETSGDFEKLLLAL 53 (53)
T ss_pred CCCHHHHHHHHHcCCHHHHHHHHHHHHHHhCccHHHHHHHhcChHHHHHHHhC
Confidence 79999999999999999999999999999999999999999999999999875
No 7
>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function.
Probab=65.56 E-value=1.7e+02 Score=30.23 Aligned_cols=84 Identities=12% Similarity=0.028 Sum_probs=50.6
Q ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHcCCCHHHHHHHHHHhHhhhcchHHHhhhhhc----ch------hHHHHHHHHcC-
Q 035973 14 TEDCEQLRKAFEGWGTNEQLIISILAHRNAAQRKLIRQTYADTYGEDLLKSLDKEL----TN------DFERVVMLWTL- 82 (316)
Q Consensus 14 ~~da~~L~~A~~g~gtde~~li~il~~rs~~q~~~i~~~Y~~~~~~~L~~~l~~e~----sg------~~~~ll~~l~~- 82 (316)
+..|..|++.+.+.-.++..--.+=++.+.+-++.++.+.-+.-.++=...+..|. -| =|+.+|.+++.
T Consensus 151 ~~~a~~lr~~~~~~~~~~~~~~~~~~~~~se~~~~l~~~~~~La~r~~~~~~~~e~chWadgyplN~~LYe~LL~~~FD~ 230 (677)
T PF05664_consen 151 NASAQRLRQIIAKIREDEAEDKPIDTGKNSESMRALRSAVISLAWRPSRDGSSGETCHWADGYPLNVRLYEKLLFSVFDI 230 (677)
T ss_pred chhHHHHHHHHHhcccccccCCcCccccccHHHHHHHHHHHHHhcCCCCCCCCCcccccccCCCccHHHHHHHHHHHhcc
Confidence 35678888888875444333333445667788899999888777664222223332 22 17788887774
Q ss_pred ---CcHHHHHHHHHHhhc
Q 035973 83 ---DPAERDAFLANEATK 97 (316)
Q Consensus 83 ---~~~~~da~~L~~A~k 97 (316)
+.+-.++..+-+-+|
T Consensus 231 ~de~~vidE~dEvlellK 248 (677)
T PF05664_consen 231 LDEGQVIDEVDEVLELLK 248 (677)
T ss_pred cccchHHhhHHHHHHHHH
Confidence 234455655555555
No 8
>COG5173 SEC6 Exocyst complex subunit SEC6 [Intracellular trafficking and secretion]
Probab=57.02 E-value=1.7e+02 Score=29.43 Aligned_cols=79 Identities=9% Similarity=0.034 Sum_probs=45.9
Q ss_pred ChhHHHHHhccCCHHHHHHHHHHHHHHhcccHHHHhhccCcchHH-HHHHHHHhhhccCCchhcHhHHHHHHHHHHhhcc
Q 035973 102 SNQVLMEIACTRSSKQLLEARQAYHARFKKSLEEDVGYHTNGDFR-KLLLPLVTAYRYEGDEVNITLAKSEAKILHEKIS 180 (316)
Q Consensus 102 de~~lieIl~~rs~~~l~~i~~~Y~~~~~~~L~~~i~~~~sg~~~-~~l~~ll~~~r~~~~~vd~~~~~~dA~~L~~A~~ 180 (316)
|-..+-+.+....|+++. |...|...|.+-|..-+.++.+.... -.++.++...++-. +-.+.++.....+++
T Consensus 292 dL~~i~e~i~~~~pp~~N-I~~~y~~~YqecL~~L~td~v~~~~~a~~iL~ii~f~~~y~-----~t~e~~f~f~~dev~ 365 (742)
T COG5173 292 DLSFIRENISLSFPPFDN-ILTLYHNNYQECLLKLFTDEVTERLDAGEILAIIEFVGNYY-----NTIESKFNFIADEVG 365 (742)
T ss_pred HHHHHHHHccccCCchHH-HHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHH-----HHHHHhCCccHHHhc
Confidence 345566788888899987 88889988888877777665543322 23344444433221 113344444445555
Q ss_pred c-CCCCh
Q 035973 181 N-KTYND 186 (316)
Q Consensus 181 ~-~gtde 186 (316)
+ .+.++
T Consensus 366 ~~l~d~e 372 (742)
T COG5173 366 GRLLDNE 372 (742)
T ss_pred ccccCCc
Confidence 5 34444
No 9
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=51.66 E-value=46 Score=25.27 Aligned_cols=45 Identities=27% Similarity=0.304 Sum_probs=37.4
Q ss_pred CCCCCChHHHHHHHHHhhhcCCCCHHHHHHHHcC-----CCHHHHHHHHH
Q 035973 7 PAQVPSVTEDCEQLRKAFEGWGTNEQLIISILAH-----RNAAQRKLIRQ 51 (316)
Q Consensus 7 ~~~~~~~~~da~~L~~A~~g~gtde~~li~il~~-----rs~~q~~~i~~ 51 (316)
|..++++..|...++.-++|...++..|-+||.. ||++|+-.+..
T Consensus 25 ~~~~~~~~e~l~~i~r~f~g~lv~~kEi~~ilG~~~~i~Rt~~Qvv~~l~ 74 (99)
T PF13758_consen 25 PEDDDATREDLLRIRRDFGGSLVTEKEIKEILGEGQGITRTREQVVDVLS 74 (99)
T ss_pred cccCCCCHHHHHHHHHhcCcccccHHHHHHHhCCCCCCCcCHHHHHHHHH
Confidence 4334678888999999999999999999999988 88888877654
No 10
>PF14003 YlbE: YlbE-like protein
Probab=49.29 E-value=40 Score=23.47 Aligned_cols=32 Identities=19% Similarity=0.296 Sum_probs=27.9
Q ss_pred HhhCCHHHHHHHHHHHHhhhCCCHHHHhccCC
Q 035973 193 LATRSKAQINATLNQYKNVYGNDIDQDLEADP 224 (316)
Q Consensus 193 l~~rs~~~l~~I~~~Y~~~~g~~L~~~I~~~~ 224 (316)
..+|.|.++.+.-.++...||+++-+.|++-.
T Consensus 17 ~LsR~P~~l~~fe~~a~~~y~kT~p~rVek~~ 48 (65)
T PF14003_consen 17 ILSRNPEELEAFEKEAKHFYKKTIPHRVEKFS 48 (65)
T ss_pred HHccCHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 34689999999999999999999999998743
No 11
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=45.88 E-value=71 Score=30.22 Aligned_cols=44 Identities=30% Similarity=0.514 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHcCCCHHHHHHHHHHhHhhhcch
Q 035973 14 TEDCEQLRKAFEGWGTNEQLIISILAHRNAAQRKLIRQTYADTYGED 60 (316)
Q Consensus 14 ~~da~~L~~A~~g~gtde~~li~il~~rs~~q~~~i~~~Y~~~~~~~ 60 (316)
..+.+..|+|+.-||||...|-.+..+|+ |.+|+..|.+--.+.
T Consensus 370 ~~e~ekFYKALs~wGtdF~LIs~lfP~R~---RkqIKaKfi~Eek~n 413 (507)
T COG5118 370 KKEIEKFYKALSIWGTDFSLISSLFPNRE---RKQIKAKFIKEEKVN 413 (507)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHhcCchh---HHHHHHHHHHHhhhC
Confidence 56889999999999999998888887776 455666676544433
No 12
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=43.81 E-value=94 Score=26.30 Aligned_cols=54 Identities=26% Similarity=0.275 Sum_probs=44.1
Q ss_pred CCChHHHHHHHHHhhhcCCCCHHHHHHHHcCCCHHHHHHHHHHhHhhh---cchHHHhhhh
Q 035973 10 VPSVTEDCEQLRKAFEGWGTNEQLIISILAHRNAAQRKLIRQTYADTY---GEDLLKSLDK 67 (316)
Q Consensus 10 ~~~~~~da~~L~~A~~g~gtde~~li~il~~rs~~q~~~i~~~Y~~~~---~~~L~~~l~~ 67 (316)
..+|..-|+-|+.. .|.|...|-++|+... +--..+.+.|-..+ |.++.+.|+.
T Consensus 31 ~~~~~~iA~fl~~~---~~l~k~~ig~~L~~~~-~~~~~vL~~y~~~f~f~~~~i~~ALR~ 87 (185)
T cd00171 31 DDSPKEIAKFLYET---EGLNKKAIGEYLGENN-EFNSLVLHEFVDLFDFSGLRLDEALRK 87 (185)
T ss_pred CCCHHHHHHHHHhC---CCCCHHHHHHHHcCCc-hHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 35788889999887 4689999999999987 45588888899887 7788887765
No 13
>COG5173 SEC6 Exocyst complex subunit SEC6 [Intracellular trafficking and secretion]
Probab=42.01 E-value=1.4e+02 Score=29.85 Aligned_cols=50 Identities=16% Similarity=0.347 Sum_probs=24.5
Q ss_pred CCCChhHHHHHHhhCCHHHHHHHHHHHHhhhCCCHHHHhccCC--------chhHHHHHHHH
Q 035973 182 KTYNDEDLIRILATRSKAQINATLNQYKNVYGNDIDQDLEADP--------KDEYLDLLRAT 235 (316)
Q Consensus 182 ~gtde~~li~il~~rs~~~l~~I~~~Y~~~~g~~L~~~I~~~~--------sg~~~~~ll~l 235 (316)
.+|+.+.++-+++.+ +-.+.+.|+..+...|.+.+++.+ .|.+.+-|+++
T Consensus 438 a~tn~sdvvgiV~~~----i~~~~tk~q~~wks~l~ee~~kq~~~npEs~~p~Gl~eyliav 495 (742)
T COG5173 438 AFTNRSDVVGIVFAH----ITRTITKYQEIWKSNLVEEMDKQFKSNPESSSPAGLEEYLIAV 495 (742)
T ss_pred hcCCccchhhhhHHH----HHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCcchHHHHHHHH
Confidence 356665444444432 444445555544444444444433 34566666654
No 14
>PF14003 YlbE: YlbE-like protein
Probab=36.44 E-value=44 Score=23.23 Aligned_cols=36 Identities=11% Similarity=0.146 Sum_probs=30.6
Q ss_pred HHHcCCCHHHHHHHHHHhHhhhcchHHHhhhhhcch
Q 035973 36 SILAHRNAAQRKLIRQTYADTYGEDLLKSLDKELTN 71 (316)
Q Consensus 36 ~il~~rs~~q~~~i~~~Y~~~~~~~L~~~l~~e~sg 71 (316)
--..+|.|+++.....++...|++.+.+.|.+-.+|
T Consensus 15 YR~LsR~P~~l~~fe~~a~~~y~kT~p~rVek~~n~ 50 (65)
T PF14003_consen 15 YRILSRNPEELEAFEKEAKHFYKKTIPHRVEKFSNQ 50 (65)
T ss_pred HHHHccCHHHHHHHHHHHHHHHhccccHHHHHHHhH
Confidence 345689999999999999999999999988875443
No 15
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=35.87 E-value=1.1e+02 Score=19.21 Aligned_cols=34 Identities=26% Similarity=0.323 Sum_probs=27.9
Q ss_pred HHHHHHHHhhhcCCCC-HHHHHHHHc-CCCHHHHHH
Q 035973 15 EDCEQLRKAFEGWGTN-EQLIISILA-HRNAAQRKL 48 (316)
Q Consensus 15 ~da~~L~~A~~g~gtd-e~~li~il~-~rs~~q~~~ 48 (316)
.+-+.|.+|++-.|.+ =..|.+-+. +||+.|...
T Consensus 7 eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~ 42 (48)
T PF00249_consen 7 EEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRS 42 (48)
T ss_dssp HHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHH
Confidence 4556788899989998 788888898 999988653
No 16
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=34.59 E-value=57 Score=23.75 Aligned_cols=21 Identities=10% Similarity=0.164 Sum_probs=17.0
Q ss_pred CCCHHHHHHHHHHhHhhhcch
Q 035973 40 HRNAAQRKLIRQTYADTYGED 60 (316)
Q Consensus 40 ~rs~~q~~~i~~~Y~~~~~~~ 60 (316)
+.+.+++..|+++|+..|...
T Consensus 27 Gfs~~~i~~l~~ayr~l~~~~ 47 (83)
T PF13720_consen 27 GFSKEEISALRRAYRILFRSG 47 (83)
T ss_dssp TS-HHHHHHHHHHHHHHHTSS
T ss_pred CCCHHHHHHHHHHHHHHHhCC
Confidence 358899999999999999643
No 17
>PF15173 FAM180: FAM180 family
Probab=34.04 E-value=2.3e+02 Score=22.74 Aligned_cols=69 Identities=12% Similarity=0.065 Sum_probs=48.1
Q ss_pred CCChhHHHHHHhhCCHHHHHHHHHHHHhhhCCCHHHHhccCCchhHHHHHHHHHHhccCchHHHHHHHHHhhhcCCCChh
Q 035973 183 TYNDEDLIRILATRSKAQINATLNQYKNVYGNDIDQDLEADPKDEYLDLLRATVQCLVRPEHYFEKILRLAINKQGTDEG 262 (316)
Q Consensus 183 gtde~~li~il~~rs~~~l~~I~~~Y~~~~g~~L~~~I~~~~sg~~~~~ll~l~~~~~~~~~~~a~~l~~a~~g~gtd~~ 262 (316)
+.+-..+++-++-++.++++..-+.+.+.-| .|. .-||++.+++++.| |.+++.+..| ...+
T Consensus 59 ~~~l~~ic~~viPk~l~di~rl~~~ls~~~g-~L~-------~~DFErtlLTlvy~--------ayr~~~s~~~--~qr~ 120 (137)
T PF15173_consen 59 ARRLEVICQDVIPKSLPDIRRLSAQLSQHRG-PLS-------PEDFERTLLTLVYT--------AYRLANSSEG--HQRD 120 (137)
T ss_pred hhHHHHHHHHHCCCcHHHHHHHHHHHHhCCC-CCC-------HHHHHHHHHHHHHH--------HHHHHHhhhH--HHHH
Confidence 4566778888888999999998888876655 321 25899999999865 6677766555 2334
Q ss_pred hHHHHHH
Q 035973 263 ALTRVVT 269 (316)
Q Consensus 263 ~l~ril~ 269 (316)
.+.+.++
T Consensus 121 ~Wa~~f~ 127 (137)
T PF15173_consen 121 RWAQSFV 127 (137)
T ss_pred HHHHHHH
Confidence 5555444
No 18
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=33.67 E-value=1.1e+02 Score=18.43 Aligned_cols=35 Identities=29% Similarity=0.252 Sum_probs=27.4
Q ss_pred HHHHHHHHhhhcCC-CCHHHHHHHHcCCCHHHHHHH
Q 035973 15 EDCEQLRKAFEGWG-TNEQLIISILAHRNAAQRKLI 49 (316)
Q Consensus 15 ~da~~L~~A~~g~g-tde~~li~il~~rs~~q~~~i 49 (316)
.+...|..++...| .+=..|.+.+.+||+.|...-
T Consensus 7 ~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~ 42 (49)
T smart00717 7 EEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRER 42 (49)
T ss_pred HHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHH
Confidence 34457788888888 888899999999999877543
No 19
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=33.39 E-value=51 Score=31.14 Aligned_cols=58 Identities=16% Similarity=0.156 Sum_probs=40.8
Q ss_pred HHHHHHHhhcccCCCChhHHHHHHhhCCHHHHHHHHHHHHhhhCCCHHHHhccCCchh
Q 035973 170 SEAKILHEKISNKTYNDEDLIRILATRSKAQINATLNQYKNVYGNDIDQDLEADPKDE 227 (316)
Q Consensus 170 ~dA~~L~~A~~~~gtde~~li~il~~rs~~~l~~I~~~Y~~~~g~~L~~~I~~~~sg~ 227 (316)
.+...+|+|+.-||||...+-.++-.|+..|+.+=+..=++...--+..+++....-+
T Consensus 371 ~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek~nP~rIn~aL~~kkp~d 428 (507)
T COG5118 371 KEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEKVNPERINEALNEKKPFD 428 (507)
T ss_pred HHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhhhCHHHHHHHHhccCCCC
Confidence 4678899999999999999999999998888765443333333344555665544433
No 20
>KOG2286 consensus Exocyst complex subunit SEC6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.77 E-value=4.6e+02 Score=27.15 Aligned_cols=207 Identities=10% Similarity=0.055 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhccCCCChhHHHHHhccCCHHHHHHHHHHHHHHhcccHHHHhhc-cCcchHHHHHHHHHhhhccCCchh
Q 035973 85 AERDAFLANEATKRWTSSNQVLMEIACTRSSKQLLEARQAYHARFKKSLEEDVGY-HTNGDFRKLLLPLVTAYRYEGDEV 163 (316)
Q Consensus 85 ~~~da~~L~~A~kg~gtde~~lieIl~~rs~~~l~~i~~~Y~~~~~~~L~~~i~~-~~sg~~~~~l~~ll~~~r~~~~~v 163 (316)
...+.+.++..+.- |-..+.+.+..+.|+++. |..+|-..|...|.+-+.. .....+..-.+.++
T Consensus 235 ~~~~~e~~r~~i~E---dL~~~~~~l~~cfpp~~~-if~~~l~~Yh~~ls~ll~dl~s~~l~~~eil~ll---------- 300 (667)
T KOG2286|consen 235 QVRLLEVLRFVIRE---DLRVAKRVLVPCFPPHYN-IFSAYLELYHQALSDLLRDLASEALELREILQLL---------- 300 (667)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHhhcccCCchhH-HHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHH----------
Q ss_pred cHhHHHHHHH-HHHhhcccCCCChhHHHHHHhhCCHHHHHHHHHHHHhhhCCCHHHHhccCCchhHHHHHHHHH------
Q 035973 164 NITLAKSEAK-ILHEKISNKTYNDEDLIRILATRSKAQINATLNQYKNVYGNDIDQDLEADPKDEYLDLLRATV------ 236 (316)
Q Consensus 164 d~~~~~~dA~-~L~~A~~~~gtde~~li~il~~rs~~~l~~I~~~Y~~~~g~~L~~~I~~~~sg~~~~~ll~l~------ 236 (316)
..+. ..++-... .+-.+..++=....+.|+.++.+.|-.....++.+-+.+-++-+........-
T Consensus 301 ------awV~~~~~~~~l~--~~~~~~~~l~p~l~~~~v~~Ll~~Y~~~~t~n~~ewl~~~~e~e~~~~~~~~~P~rd~~ 372 (667)
T KOG2286|consen 301 ------AWVRNEYYTPLLQ--LNVDVLRALGPLLRPKHVVALLDLYLERATANMKEWLMNALELEAAAWAKETEPPRDEE 372 (667)
T ss_pred ------HHHHHHhcChhhh--ccchhhhhhcCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccc
Q ss_pred -HhccCchHHHHHHHHHhhhcCCCChhhHHHHHHhcCHHHHHHHHHHHHhhcCCchHHHHhhcCcHHHHHHHHHhhcCC
Q 035973 237 -QCLVRPEHYFEKILRLAINKQGTDEGALTRVVTTRAEVDLKVIKDEYQRRNSVPLDRAVVKDTSGDYEKMLLALLGHG 314 (316)
Q Consensus 237 -~~~~~~~~~~a~~l~~a~~g~gtd~~~l~ril~~r~~~~l~~i~~~Y~~~yg~~L~~~i~~~~~G~~~~~Ll~l~~~~ 314 (316)
.+..+-|..+...+...+...-...+.|.-.+..-+-..+....+-|.+.+-...+.. +.+.++.|..+++|++..+
T Consensus 373 g~~~t~~p~~~fqmi~q~l~~~~~~~~Dl~~~~~~~~~~~v~~f~~~~~~~~~~~~e~~-~~~~~~~l~~y~iA~~N~~ 450 (667)
T KOG2286|consen 373 GYLYTPGPVIFFQMITQQLQVAAATSSDLSGKILRSLLSEVPSFARNYPKAQDEDQESH-RREQPEGLREYLIANINNN 450 (667)
T ss_pred ccccCcccHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHhc-hhcccccHHHHHHHHHhch
No 21
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=31.73 E-value=3e+02 Score=22.83 Aligned_cols=86 Identities=10% Similarity=0.128 Sum_probs=55.0
Q ss_pred HHcCCCHHHHHHHHHHhHhhhcchHHHhhhhhcchhHHHHHHHHcCCcHHHHHHHHHHhhcc--CCCChhHHHHHhccCC
Q 035973 37 ILAHRNAAQRKLIRQTYADTYGEDLLKSLDKELTNDFERVVMLWTLDPAERDAFLANEATKR--WTSSNQVLMEIACTRS 114 (316)
Q Consensus 37 il~~rs~~q~~~i~~~Y~~~~~~~L~~~l~~e~sg~~~~ll~~l~~~~~~~da~~L~~A~kg--~gtde~~lieIl~~rs 114 (316)
..+.-+.+|+++++++|+-..... ...| ..+++.+++..+=.+|.+..+..+-..+.. ...|...++.++...+
T Consensus 10 ~~~~~t~~qi~~lkeaF~l~D~d~-~G~I---~~~el~~ilr~lg~~~s~~ei~~l~~~~d~~~~~idf~~Fl~~ms~~~ 85 (160)
T COG5126 10 TFTQLTEEQIQELKEAFQLFDRDS-DGLI---DRNELGKILRSLGFNPSEAEINKLFEEIDAGNETVDFPEFLTVMSVKL 85 (160)
T ss_pred hcccCCHHHHHHHHHHHHHhCcCC-CCCC---cHHHHHHHHHHcCCCCcHHHHHHHHHhccCCCCccCHHHHHHHHHHHh
Confidence 345678999999999998665321 0001 134677887777788888888888888874 2346666666654332
Q ss_pred -----HHHHHHHHHHHH
Q 035973 115 -----SKQLLEARQAYH 126 (316)
Q Consensus 115 -----~~~l~~i~~~Y~ 126 (316)
.++++...+.|-
T Consensus 86 ~~~~~~Eel~~aF~~fD 102 (160)
T COG5126 86 KRGDKEEELREAFKLFD 102 (160)
T ss_pred ccCCcHHHHHHHHHHhC
Confidence 455555554443
No 22
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=30.32 E-value=1.2e+02 Score=17.89 Aligned_cols=34 Identities=29% Similarity=0.296 Sum_probs=26.9
Q ss_pred HHHHHHHHhhhcCC-CCHHHHHHHHcCCCHHHHHH
Q 035973 15 EDCEQLRKAFEGWG-TNEQLIISILAHRNAAQRKL 48 (316)
Q Consensus 15 ~da~~L~~A~~g~g-tde~~li~il~~rs~~q~~~ 48 (316)
.+-..|.+++...| .+=..|.+.+.+||..|...
T Consensus 5 eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~ 39 (45)
T cd00167 5 EEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRE 39 (45)
T ss_pred HHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHH
Confidence 45567778888888 78889999999999987653
No 23
>PRK10969 DNA polymerase III subunit theta; Reviewed
Probab=29.84 E-value=1.2e+02 Score=21.64 Aligned_cols=36 Identities=19% Similarity=0.368 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhhcCCc-hHHHHhhcCcHHHHHHHH
Q 035973 273 EVDLKVIKDEYQRRNSVP-LDRAVVKDTSGDYEKMLL 308 (316)
Q Consensus 273 ~~~l~~i~~~Y~~~yg~~-L~~~i~~~~~G~~~~~Ll 308 (316)
..||.+---+|++.|+++ ..+.|..+.+.+++.++.
T Consensus 17 nvDLaASgVafkER~n~pvi~e~ve~eqPe~lR~yFr 53 (75)
T PRK10969 17 NVDLAASGVAFKERYNMPVIAEAVEREQPEHLRSYFR 53 (75)
T ss_pred HHHHHHHHHHHHHHcCCcccHHHHHHhCCHHHHHHHH
Confidence 367888888899999998 566788889888887764
No 24
>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A.
Probab=29.43 E-value=64 Score=25.17 Aligned_cols=49 Identities=14% Similarity=0.222 Sum_probs=35.6
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhhhCCCHHHHhccCC--------chhHHHHHHHHH
Q 035973 188 DLIRILATRSKAQINATLNQYKNVYGNDIDQDLEADP--------KDEYLDLLRATV 236 (316)
Q Consensus 188 ~li~il~~rs~~~l~~I~~~Y~~~~g~~L~~~I~~~~--------sg~~~~~ll~l~ 236 (316)
...+.|.++||.-+.-....+++-.+.+|.+++..++ .|||.+.+.+++
T Consensus 35 ~~~~~l~~~SP~Sl~vt~~~l~~~~~~sl~e~l~~E~~~a~~~~~~~DF~EGVRA~L 91 (118)
T PF13766_consen 35 KTLETLRSGSPLSLKVTFEQLRRGRNLSLAECLRMEYRLASRCMRHPDFAEGVRALL 91 (118)
T ss_dssp HHHHHHCCS-HHHHHHHHHHHHCCTTS-HHHHHHHHHHHHHHHHCCSCHHHHHHHHT
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 3446667789999999999999888899999988764 366777666654
No 25
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.80 E-value=1.5e+02 Score=25.52 Aligned_cols=47 Identities=19% Similarity=0.331 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHHHhhhCCCHHHHhccCCchhHHHHHHHHHHh-ccCch
Q 035973 197 SKAQINATLNQYKNVYGNDIDQDLEADPKDEYLDLLRATVQC-LVRPE 243 (316)
Q Consensus 197 s~~~l~~I~~~Y~~~~g~~L~~~I~~~~sg~~~~~ll~l~~~-~~~~~ 243 (316)
...-|+.|++.|.+.||.....++...+..+|...|..-++. ..+|.
T Consensus 76 pfaFLe~Ik~~F~k~YG~~a~ta~AysmN~EFs~vL~qqm~y~s~~p~ 123 (217)
T KOG0859|consen 76 PFAFLERIKEDFKKRYGGGAHTAVAYSMNKEFSSVLKQQMQYCSEHPE 123 (217)
T ss_pred cHHHHHHHHHHHHHHhccchhHHHHhHhHHHHHHHHHHHHHHHHcCcc
Confidence 556789999999999999999999988889999888766554 44553
No 26
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=26.53 E-value=39 Score=32.41 Aligned_cols=38 Identities=16% Similarity=0.366 Sum_probs=32.0
Q ss_pred CccccCCCCC----CChHHHHHHHHHhhhcCCCCHHHHHHHH
Q 035973 1 MSTLTVPAQV----PSVTEDCEQLRKAFEGWGTNEQLIISIL 38 (316)
Q Consensus 1 ~~~~~~~~~~----~~~~~da~~L~~A~~g~gtde~~li~il 38 (316)
||.|+|+... |+|...+..|++.+...|-|.+.++-++
T Consensus 197 mgliyv~Pegp~gLPdP~~sa~~LR~~F~RmGlnd~E~VAL~ 238 (409)
T cd00649 197 MGLIYVNPEGPDGNPDPLAAAKDIRETFARMAMNDEETVALI 238 (409)
T ss_pred ccccccCCCCCCCCCCCccCHHHHHHHHHHcCCCHHHHeeec
Confidence 7888886555 7888999999999999999888888765
No 27
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=23.29 E-value=1.4e+02 Score=19.71 Aligned_cols=38 Identities=24% Similarity=0.353 Sum_probs=24.7
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHcCCCHHHHHHHHHHhHh
Q 035973 15 EDCEQLRKAFEGWGTNEQLIISILAHRNAAQRKLIRQTYAD 55 (316)
Q Consensus 15 ~da~~L~~A~~g~gtde~~li~il~~rs~~q~~~i~~~Y~~ 55 (316)
.+-+.|..+++..|.+=..|.+.|.+||+.| ++..|..
T Consensus 4 eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~---~~~r~~~ 41 (60)
T PF13921_consen 4 EEDELLLELVKKYGNDWKKIAEHLGNRTPKQ---CRNRWRN 41 (60)
T ss_dssp HHHHHHHHHHHHHTS-HHHHHHHSTTS-HHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHCcCCHHH---HHHHHHH
Confidence 4556677777766777778888886688855 4555555
No 28
>PF13043 DUF3903: Domain of unknown function (DUF3903)
Probab=22.19 E-value=80 Score=19.18 Aligned_cols=17 Identities=18% Similarity=0.386 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhhhCCCH
Q 035973 200 QINATLNQYKNVYGNDI 216 (316)
Q Consensus 200 ~l~~I~~~Y~~~~g~~L 216 (316)
-++.++.+-++.||++|
T Consensus 9 ai~kvr~eckrrfgktl 25 (40)
T PF13043_consen 9 AIQKVRAECKRRFGKTL 25 (40)
T ss_pred HHHHHHHHHHHHhchhh
Confidence 36788899999999986
No 29
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.42 E-value=4.3e+02 Score=22.86 Aligned_cols=46 Identities=15% Similarity=0.221 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHHHHhcccHHHHhhccCcchHHHHHHHHHhhhcc
Q 035973 113 RSSKQLLEARQAYHARFKKSLEEDVGYHTNGDFRKLLLPLVTAYRY 158 (316)
Q Consensus 113 rs~~~l~~i~~~Y~~~~~~~L~~~i~~~~sg~~~~~l~~ll~~~r~ 158 (316)
++-.-+..|++.|.+.||..-..++-..+...|-+.|..-+...-+
T Consensus 75 ipfaFLe~Ik~~F~k~YG~~a~ta~AysmN~EFs~vL~qqm~y~s~ 120 (217)
T KOG0859|consen 75 IPFAFLERIKEDFKKRYGGGAHTAVAYSMNKEFSSVLKQQMQYCSE 120 (217)
T ss_pred ccHHHHHHHHHHHHHHhccchhHHHHhHhHHHHHHHHHHHHHHHHc
Confidence 4667899999999999999988888777777777777666654433
No 30
>PRK10236 hypothetical protein; Provisional
Probab=21.16 E-value=5.9e+02 Score=22.61 Aligned_cols=65 Identities=15% Similarity=0.216 Sum_probs=38.9
Q ss_pred HHHHHHHHHhhhCCCHHHHhccCCchhHHHHHHHHHHhccCc-----------hHHHHHHHHHhhhcCCCCh-hhHHH
Q 035973 201 INATLNQYKNVYGNDIDQDLEADPKDEYLDLLRATVQCLVRP-----------EHYFEKILRLAINKQGTDE-GALTR 266 (316)
Q Consensus 201 l~~I~~~Y~~~~g~~L~~~I~~~~sg~~~~~ll~l~~~~~~~-----------~~~~a~~l~~a~~g~gtd~-~~l~r 266 (316)
|+.|..+++..=|-++...++... ..|++.|.-+++...=| ...+.+.+.++.+.+...+ ..|.+
T Consensus 63 w~~Ia~elq~fGgnt~~n~lRG~G-v~YreIL~DVc~~LKV~y~~~~st~~iE~~il~kll~~a~~kms~eE~~~L~~ 139 (237)
T PRK10236 63 WQLIAGELQHFGGDSIANKLRGHG-KLYRAILLDVSKRLKLKADKEMSTFEIEQQLLEQFLRNTWKKMDEEHKQEFLH 139 (237)
T ss_pred HHHHHHHHHHhcchHHHHHHhcCC-ccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 566777777655677777777432 26888887777665421 1335566666766654433 34443
No 31
>PF11159 DUF2939: Protein of unknown function (DUF2939); InterPro: IPR021330 This bacterial family of proteins has no known function.
Probab=20.96 E-value=1.8e+02 Score=21.43 Aligned_cols=47 Identities=23% Similarity=0.294 Sum_probs=34.0
Q ss_pred CchHHHHHHHHHhhhcCCCChhhHHHHHHhcCHHHHHHHHHHHHhhcCCchHHHH
Q 035973 241 RPEHYFEKILRLAINKQGTDEGALTRVVTTRAEVDLKVIKDEYQRRNSVPLDRAV 295 (316)
Q Consensus 241 ~~~~~~a~~l~~a~~g~gtd~~~l~ril~~r~~~~l~~i~~~Y~~~yg~~L~~~i 295 (316)
-.|-+..+.|.+|++. .|...|.+ -+|+.+|+...++.....+...+
T Consensus 11 ~sPy~al~~i~~Ai~~--~D~~~l~~------~VD~~avr~slk~ql~~~~~~~~ 57 (95)
T PF11159_consen 11 ASPYYALYQIRQAIQA--HDAAALAR------YVDFPAVRASLKDQLNAELVSRI 57 (95)
T ss_pred HCHHHHHHHHHHHHHH--cCHHHHHH------HcCHHHHHHHHHHHHHHHHHhhc
Confidence 4566678999999987 36677775 35777888888777666666655
No 32
>KOG2027 consensus Spindle pole body protein [Cytoskeleton]
Probab=20.86 E-value=1.2e+02 Score=28.97 Aligned_cols=26 Identities=15% Similarity=0.316 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhhcCCchHHHHhhcC
Q 035973 274 VDLKVIKDEYQRRNSVPLDRAVVKDT 299 (316)
Q Consensus 274 ~~l~~i~~~Y~~~yg~~L~~~i~~~~ 299 (316)
.+|..|++.|-++||+++........
T Consensus 98 pEL~~i~~~f~~kYGk~f~~~a~~l~ 123 (388)
T KOG2027|consen 98 PELREIRDLFVKKYGKEFVKAAIELR 123 (388)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhcc
Confidence 68999999999999999988766553
No 33
>TIGR03031 cas_csx12 CRISPR-associated protein, Csx12 family. Members of this family of CRISPR-associated (cas) protein are found, so far, in CRISPR/cas loci in Wolinella succinogenes DSM 1740, Legionella pneumophila str. Paris, and Francisella tularensis, where the last probably is an example of a degenerate CRISPR locus, having neither repeats nor a functional Cas1. The characteristic repeat length is 37 base pairs and period is about 72. One region of this large protein shows sequence similarity to PFAM model pfam01844, HNH endonuclease.
Probab=20.20 E-value=2.1e+02 Score=29.03 Aligned_cols=81 Identities=15% Similarity=0.121 Sum_probs=54.5
Q ss_pred CHHHHHHHHcCCCHHHHHHHHHHhHhhhcchHHHhhhhhcchhHHHHHHHHcCC---cHHHHHHHHHHhhccCCCChhHH
Q 035973 30 NEQLIISILAHRNAAQRKLIRQTYADTYGEDLLKSLDKELTNDFERVVMLWTLD---PAERDAFLANEATKRWTSSNQVL 106 (316)
Q Consensus 30 de~~li~il~~rs~~q~~~i~~~Y~~~~~~~L~~~l~~e~sg~~~~ll~~l~~~---~~~~da~~L~~A~kg~gtde~~l 106 (316)
.-..+..++++.||-|+..+++.|...--+.-.......+...|.+.+..|-.+ ........|-.-+++. ..+
T Consensus 238 ~~~~l~nLvGnlSN~qlk~LrrYfnDk~~~k~d~wdeqkf~~~~~r~v~~wrh~K~d~~~~~~knli~~lKqk----~~~ 313 (802)
T TIGR03031 238 PSVCLSNLLGNLSNLQLKNLRRYFNDKIHKKPDQWDEQKFGNEFLRMLKNWRHLKGDQESLAVRNLIQQLKQK----QDY 313 (802)
T ss_pred chhhHHHHhhhhhhhhHHHHHHHhccccccccccccHhHHHHHHHHHHHhccCcCCcHhHHHHHHHHHHHhcc----chH
Confidence 335688999999999999999988866655556666667777788888877322 2334444555555553 146
Q ss_pred HHHhccCC
Q 035973 107 MEIACTRS 114 (316)
Q Consensus 107 ieIl~~rs 114 (316)
+++|.+.+
T Consensus 314 i~~L~~~~ 321 (802)
T TIGR03031 314 ISILEKTP 321 (802)
T ss_pred HHHHHhCC
Confidence 66665543
Done!