BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035975
(685 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P97868|RBBP6_MOUSE E3 ubiquitin-protein ligase RBBP6 OS=Mus musculus GN=Rbbp6 PE=1
SV=5
Length = 1790
Score = 66.6 bits (161), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 134 FPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVE--KARCPKCFSSKCRLEDLLPN 191
P EL C +C + +AV+IPCC +S+C++CIR L+E + CP C + + L+ N
Sbjct: 254 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIAN 313
Query: 192 VSLRQAIEHF 201
LRQA+ +F
Sbjct: 314 KFLRQAVNNF 323
>sp|Q7Z6E9|RBBP6_HUMAN E3 ubiquitin-protein ligase RBBP6 OS=Homo sapiens GN=RBBP6 PE=1
SV=1
Length = 1792
Score = 66.6 bits (161), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 134 FPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVE--KARCPKCFSSKCRLEDLLPN 191
P EL C +C + +AV+IPCC +S+C++CIR L+E + CP C + + L+ N
Sbjct: 253 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIAN 312
Query: 192 VSLRQAIEHF 201
LRQA+ +F
Sbjct: 313 KFLRQAVNNF 322
>sp|O94264|YORF_SCHPO Uncharacterized RING finger protein P8B7.15c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBP8B7.15c PE=4 SV=1
Length = 482
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 138 LKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEK-ARCPKCFSSKCRLEDLLPNVSLRQ 196
L C+LC L + A PCC FCE+CI+ L++ CP C L+ L P+ ++
Sbjct: 280 LACTLCKKLARNACRTPCCDKLFCEECIQTALLDSDFECPNCHRKDVLLDTLNPDYQKQR 339
Query: 197 AIEHFLESQILISGSENA 214
IE ++S +L S S+N+
Sbjct: 340 EIEAVVKS-VLGSNSKNS 356
>sp|Q91431|NF7O_XENLA Nuclear factor 7, ovary OS=Xenopus laevis PE=2 SV=1
Length = 610
Score = 49.3 bits (116), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 123 KTNASAMENGNFPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKAR--CPKCFS 180
KT AS G+F EL C LC LFK+ VM+ C H+FC CI V ++ CP+C
Sbjct: 129 KTAASLGAAGDFAEELTCPLCVELFKDPVMV-ACGHNFCRSCIDKVWEGQSSFACPECKE 187
Query: 181 S----KCRLEDLLPNVSLRQA 197
S K + +L N++ + A
Sbjct: 188 SITDRKYTINRVLANLAKKAA 208
>sp|Q9D4H7|LONF3_MOUSE LON peptidase N-terminal domain and RING finger protein 3 OS=Mus
musculus GN=Lonrf3 PE=2 SV=1
Length = 753
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 41/78 (52%), Gaps = 11/78 (14%)
Query: 132 GNF-PSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKARCPKCFSSKCRLEDLLP 190
G+F S+L+CSLC LF E V PC H+FC KC+ L A+CP C K L LP
Sbjct: 452 GSFDASDLECSLCMRLFYEPVTTPC-GHTFCLKCLERCLDHNAKCPLC---KDVLLQCLP 507
Query: 191 ------NVSLRQAIEHFL 202
NV L + I FL
Sbjct: 508 SRKYSKNVILEELIATFL 525
>sp|Q6CHI1|RAD18_YARLI Postreplication repair E3 ubiquitin-protein ligase RAD18
OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=RAD18 PE=3 SV=1
Length = 344
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 138 LKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKA-RCPKCFSSKCRLEDLLPNVSLRQ 196
L+C +C F A MI C H+FC CI+ L + RCP C + ++ L NV++
Sbjct: 26 LRCHICKEFFT-APMITGCGHTFCSLCIQRYLTNTSQRCPTCMQEQ-QISQLRKNVTVET 83
Query: 197 AIEHF 201
+EHF
Sbjct: 84 LVEHF 88
>sp|Q4WZJ6|RAD18_ASPFU Postreplication repair E3 ubiquitin-protein ligase rad18
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=rad18 PE=3 SV=1
Length = 418
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 136 SELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKARCPKCFSSKCRLEDLLPNVSLR 195
S L+C +C F V I C H+FC CIR L + +CP C SS L+ L N +++
Sbjct: 26 SSLRCQVCKDFFDNPV-ITSCSHTFCSLCIRRCLSTEGKCPACRSSDQELK-LRRNWAVQ 83
Query: 196 QAIEHF 201
+ +E F
Sbjct: 84 ELVEAF 89
>sp|Q9QXK2|RAD18_MOUSE E3 ubiquitin-protein ligase RAD18 OS=Mus musculus GN=Rad18 PE=1
SV=2
Length = 509
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 66/150 (44%), Gaps = 19/150 (12%)
Query: 138 LKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKARCPKCFSSKCRLEDLLPNVSLRQA 197
L+C +C F AV+IP C H++C CIR L K +CP C + DL N L +
Sbjct: 23 LRCGICFEYFNIAVIIPQCSHNYCSLCIRKFLSYKTQCPTCCVAVTE-PDLRNNRLLDEL 81
Query: 198 IE--HFLESQILISGSENAYHRYAPDGESGIQAKDVSCAVTNLQREPELADSPSATGRGS 255
++ +F + +L E+ P +K V V N AD+ + +
Sbjct: 82 VKSMNFARTHLLQFALES-----PPISPVSSTSKKVVVKVHN-------ADAAQHPVKQA 129
Query: 256 NQIVADCDSVIRNNTGSCV-NHLGADNSLK 284
N+++ D + TG CV LG +N K
Sbjct: 130 NRLM---DKFLIRETGDCVFELLGKENERK 156
>sp|Q02398|RAD18_EMENI Postreplication repair E3 ubiquitin-protein ligase rad18
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=uvsH PE=2 SV=1
Length = 443
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 134 FPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKARCPKCFSSKCRLEDLLPNVS 193
F + L+C +C F V I C H+FC CIR L + +CP C SS L+ L N
Sbjct: 24 FETSLRCQVCKDFFDNPV-ITSCSHTFCSLCIRRCLSTEGKCPTCRSSDQELK-LRRNWV 81
Query: 194 LRQAIEHF 201
+++ +E F
Sbjct: 82 VQELVEGF 89
>sp|Q803C1|RNF8_DANRE E3 ubiquitin-protein ligase RNF8 OS=Danio rerio GN=rnf8 PE=2 SV=1
Length = 485
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 134 FPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKARCPKCF 179
SEL+CS+C+ LF EAV + C HSFC+ CI K +CP C+
Sbjct: 386 LESELQCSICSELFIEAVTLNCA-HSFCQHCISEWRNRKDKCPMCW 430
>sp|Q6CTZ8|RAD18_KLULA Postreplication repair E3 ubiquitin-protein ligase RAD18
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=RAD18
PE=3 SV=1
Length = 427
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 133 NFPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKARCPKCFS 180
+ S L+C +C K +V+ PC HSFC CIR L ++++CP C S
Sbjct: 25 DLDSLLRCHICKDFLKASVLTPC-GHSFCSICIRKYLQKESKCPLCLS 71
>sp|Q9NS91|RAD18_HUMAN E3 ubiquitin-protein ligase RAD18 OS=Homo sapiens GN=RAD18 PE=1
SV=2
Length = 495
Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 138 LKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKARCPKC 178
L+C +C F A++IP C H++C CIR L K +CP C
Sbjct: 23 LRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTC 63
>sp|Q8HXH0|LONF3_MACFA LON peptidase N-terminal domain and RING finger protein 3 OS=Macaca
fascicularis GN=LONRF3 PE=2 SV=1
Length = 718
Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 136 SELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKARCPKC---FSSKCRLEDLLPNV 192
S+L+C+LC LF E V PC H+FC KC+ L A+CP C S NV
Sbjct: 422 SDLECALCMRLFYEPVTTPC-GHTFCLKCLERCLDHNAKCPLCKDGLSQCLASRKYSKNV 480
Query: 193 SLRQAIEHFLESQI 206
+ + I FL ++
Sbjct: 481 IMEELIAKFLPEEL 494
>sp|Q496Y0|LONF3_HUMAN LON peptidase N-terminal domain and RING finger protein 3 OS=Homo
sapiens GN=LONRF3 PE=1 SV=1
Length = 759
Score = 46.2 bits (108), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 136 SELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKARCPKC---FSSKCRLEDLLPNV 192
S+L+C+LC LF E V PC H+FC KC+ L A+CP C S NV
Sbjct: 463 SDLECALCMRLFYEPVTTPC-GHTFCLKCLERCLDHNAKCPLCKDGLSQCLASRKYSKNV 521
Query: 193 SLRQAIEHFLESQI 206
+ + I FL ++
Sbjct: 522 IMEELIAKFLPEEL 535
>sp|Q8NHY2|RFWD2_HUMAN E3 ubiquitin-protein ligase RFWD2 OS=Homo sapiens GN=RFWD2 PE=1
SV=1
Length = 731
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 137 ELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKARCPKCFSSKCRLEDLLPNVSLRQ 196
+ C +C + +EA M C HSFC KCI L + RCPKC ++ L PN + +
Sbjct: 133 DFVCPICFDMIEEAYMTKC-GHSFCYKCIHQSLEDNNRCPKCNYVVDNIDHLYPNFLVNE 191
Query: 197 AI 198
I
Sbjct: 192 LI 193
>sp|P33288|RAD18_NEUCR Postreplication repair E3 ubiquitin-protein ligase rad-18
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=uvs-2 PE=3 SV=2
Length = 501
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 138 LKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKARCPKCFSSKCRLEDLLPNVSLRQA 197
+C +C F ++ M+ C H+FC CIR L ++CP C ++ + L N +LR+A
Sbjct: 32 FRCHVCKD-FYDSPMLTSCNHTFCSLCIRRCLSVDSKCPLCRATD-QESKLRGNWALREA 89
Query: 198 IEHFLESQILI 208
+E F S+ ++
Sbjct: 90 VEAFKNSRKVL 100
>sp|Q9R1A8|RFWD2_MOUSE E3 ubiquitin-protein ligase RFWD2 OS=Mus musculus GN=Rfwd2 PE=1
SV=2
Length = 733
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 137 ELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKARCPKCFSSKCRLEDLLPNVSLRQ 196
+ C +C + +EA M C HSFC KCI L + RCPKC ++ L PN + +
Sbjct: 135 DFVCPICFDMIEEAYMTKC-GHSFCYKCIHQSLEDNNRCPKCNYVVDNIDHLYPNFLVNE 193
Query: 197 AI 198
I
Sbjct: 194 LI 195
>sp|Q92021|NF7B_XENLA Nuclear factor 7, brain OS=Xenopus laevis PE=1 SV=1
Length = 609
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Query: 125 NASAM-ENGNFPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKAR--CPKCFSS 181
NAS++ G+F EL C LC LFK+ VM+ C H+FC CI ++ CP+C S
Sbjct: 129 NASSLGAAGDFAEELTCPLCVELFKDPVMV-ACGHNFCRSCIDKAWEGQSSFACPECRES 187
Query: 182 ----KCRLEDLLPNVSLRQA 197
K + +L N++ + A
Sbjct: 188 ITDRKYTINRVLANLAKKAA 207
>sp|Q61510|TRI25_MOUSE E3 ubiquitin/ISG15 ligase TRIM25 OS=Mus musculus GN=Trim25 PE=2
SV=2
Length = 634
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 137 ELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKA---RCPKCFSSKCRLEDLLPNVS 193
EL CS+C LFKE V P C H+FC C+ V + RCP+C L N
Sbjct: 10 ELSCSVCLELFKEPVTTP-CGHNFCMSCLDETWVVQGPPYRCPQCRKVYQVRPQLQKNTV 68
Query: 194 LRQAIEHFLESQ 205
+ +E FL+++
Sbjct: 69 MCAVVEQFLQAE 80
>sp|P35728|MPE1_YEAST Protein MPE1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=MPE1 PE=1 SV=1
Length = 441
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 133 NFPSELKCSLCNTLFKEAVMIP-CCQHSFCEKCIRLVLVEK-ARCPKCFSSKCRLEDLLP 190
+ P +LKC L L ++ V CC F ++ + LVE CP C + L+ L+P
Sbjct: 283 DLPDDLKCPLTGGLLRQPVKTSKCCNIDFSKEALENALVESDFVCPNCETRDILLDSLVP 342
Query: 191 NVSLRQAIEHFLESQILISGS 211
+ + +E FL+ Q + GS
Sbjct: 343 DQDKEKEVETFLKKQEELHGS 363
>sp|Q2HJ46|RNF8_BOVIN E3 ubiquitin-protein ligase RNF8 OS=Bos taurus GN=RNF8 PE=2 SV=1
Length = 487
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 94 AVHSRIEEDLLQTESKSDVPQFMKLELVIKTNASAMENGNFPSELKCSLCNTLFKEAVMI 153
A+ +++L QT+ + + Q K E++ N +EN EL+C +C+ F EAV +
Sbjct: 365 AIIQAKDKELEQTKEEKEKVQAQKEEVLSHMN-DVLEN-----ELQCIICSEYFVEAVTL 418
Query: 154 PCCQHSFCEKCIRLVLVEKARCPKC 178
C HSFC CI + K CP C
Sbjct: 419 NCA-HSFCSYCINEWMKRKVECPIC 442
>sp|O74747|RAD18_SCHPO Postreplication repair E3 ubiquitin-protein ligase rad18
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rhp18 PE=3 SV=1
Length = 387
Score = 43.1 bits (100), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 136 SELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKARCPKCFSSKCRLEDLLPNVSLR 195
S L+C +C+ F+ A +I C H+FC CIR L E CP C + + + L N L
Sbjct: 25 SSLRCLICHEYFR-APLITSCSHTFCSFCIRDYLREHPMCPACRAPE-QESRLRKNTILE 82
Query: 196 QAIEHF 201
+ +E F
Sbjct: 83 EILESF 88
>sp|O76064|RNF8_HUMAN E3 ubiquitin-protein ligase RNF8 OS=Homo sapiens GN=RNF8 PE=1 SV=1
Length = 485
Score = 42.7 bits (99), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 102 DLLQTESKSDVPQFMKLELVIKTNASAMENGNFPSELKCSLCNTLFKEAVMIPCCQHSFC 161
+L QT+ + + Q K E++ N +EN EL+C +C+ F EAV + C HSFC
Sbjct: 371 ELEQTKEEKEKMQAQKEEVLSHMN-DVLEN-----ELQCIICSEYFIEAVTLNCA-HSFC 423
Query: 162 EKCIRLVLVEKARCPKC 178
CI + K CP C
Sbjct: 424 SYCINEWMKRKIECPIC 440
>sp|Q6FPI4|RAD18_CANGA Postreplication repair E3 ubiquitin-protein ligase RAD18 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=RAD18 PE=3 SV=1
Length = 411
Score = 42.7 bits (99), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 59/163 (36%), Gaps = 37/163 (22%)
Query: 109 KSDVPQFMKLELVIKTNASAMENGNFPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLV 168
KS VPQ +L+ + L+C +C K V+ PC H+FC CIR
Sbjct: 12 KSKVPQLQELDDL----------------LRCHICKDFLKNPVLTPC-GHTFCSLCIRGY 54
Query: 169 LVEKARCPKCFSSKCRLEDLLPNVSLRQAIEHFLESQILISGSENAY----HRYAPDGES 224
L + +CP C L + E L S+ L++ Y R + S
Sbjct: 55 LSNEPKCPLC---------------LHELRESMLRSEYLVNEITETYKAARQRLLDELNS 99
Query: 225 GIQAKDVSCAVTNLQREPELADSPSATGRGSNQI-VADCDSVI 266
+D S +EP L SN I V D +I
Sbjct: 100 LETNQDNSVIEVVSDKEPSLLQIDDDVNENSNHITVNDTSDII 142
>sp|Q5R4I2|RNF8_PONAB E3 ubiquitin-protein ligase RNF8 OS=Pongo abelii GN=RNF8 PE=2 SV=1
Length = 486
Score = 42.7 bits (99), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 102 DLLQTESKSDVPQFMKLELVIKTNASAMENGNFPSELKCSLCNTLFKEAVMIPCCQHSFC 161
+L QT+ + + Q K E++ N +EN EL+C +C+ F EAV + C HSFC
Sbjct: 372 ELEQTKEEKEKVQAQKEEVLSHMN-DVLEN-----ELQCIICSEYFIEAVTLNCA-HSFC 424
Query: 162 EKCIRLVLVEKARCPKC 178
CI + K CP C
Sbjct: 425 SYCINEWMKRKIECPIC 441
>sp|Q17RB8|LONF1_HUMAN LON peptidase N-terminal domain and RING finger protein 1 OS=Homo
sapiens GN=LONRF1 PE=2 SV=2
Length = 773
Score = 42.7 bits (99), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 45/100 (45%), Gaps = 21/100 (21%)
Query: 128 AMENGNFPSEL------KCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKARCPKCFSS 181
++ G+ P EL +CSLC LF E V PC HSFC+ C+ L CP C S
Sbjct: 461 SLAYGDIPEELIDVSDFECSLCMRLFFEPVTTPC-GHSFCKNCLERCLDHAPYCPLCKES 519
Query: 182 KCRLEDLLPNVSLRQAIEHFLESQILISGSENAYHRYAPD 221
L++ L + R + LE I+ +Y PD
Sbjct: 520 ---LKEYLADR--RYCVTQLLEELIV---------KYLPD 545
>sp|Q5FWP4|CHFR_XENLA E3 ubiquitin-protein ligase CHFR OS=Xenopus laevis GN=chfr PE=1
SV=1
Length = 625
Score = 42.4 bits (98), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 3/110 (2%)
Query: 93 GAVHSRIEEDLLQTESKSDVPQFMKLELVIKTNASAMENGNFPSELKCSLCNTLFKEAVM 152
G RI + T +K+ VP + ++ +M+ L C +C L + V
Sbjct: 219 GPPKKRIRTEDHWTTNKNFVPASCPIGASDESKTPSMKPDKMEETLTCIICQELLHDCVS 278
Query: 153 IPCCQHSFCEKCIRLVLVEKARCPKCFSSKCRLEDLLPNVSLRQAIEHFL 202
+ C H+FC C + + CP C +C +E + N L +E +L
Sbjct: 279 LQPCMHTFCAACYSGWMERSSLCPTC---RCPVERICKNHILNNLVEAYL 325
>sp|Q8VC56|RNF8_MOUSE E3 ubiquitin-protein ligase RNF8 OS=Mus musculus GN=Rnf8 PE=1 SV=1
Length = 488
Score = 42.4 bits (98), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 102 DLLQTESKSDVPQFMKLELVIKTNASAMENGNFPSELKCSLCNTLFKEAVMIPCCQHSFC 161
+L QT+ + D Q K E++ N +EN EL+C +C+ F EAV + C HSFC
Sbjct: 374 ELEQTKEEKDKVQAQKEEVLSHMN-DLLEN-----ELQCIICSEYFIEAVTLNCA-HSFC 426
Query: 162 EKCIRLVLVEKARCPKC 178
CI + K CP C
Sbjct: 427 SFCINEWMKRKVECPIC 443
>sp|Q86UV6|TRI74_HUMAN Tripartite motif-containing protein 74 OS=Homo sapiens GN=TRIM74
PE=2 SV=1
Length = 250
Score = 42.4 bits (98), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 15/70 (21%)
Query: 138 LKCSLCNTLFKEAVMIPCCQHSFCEKCIRLV---LVEKARCPKCF-----SSKCRLEDLL 189
L+C +C +FKE++M+ C HS+C+ C+ + L K RCP C+ SS L
Sbjct: 14 LQCPICLEVFKESLMLQ-CGHSYCKGCLVSLSYHLDTKVRCPMCWQVVDGSSS------L 66
Query: 190 PNVSLRQAIE 199
PNVSL IE
Sbjct: 67 PNVSLAWVIE 76
>sp|Q86UV7|TRI73_HUMAN Tripartite motif-containing protein 73 OS=Homo sapiens GN=TRIM73
PE=2 SV=1
Length = 250
Score = 42.0 bits (97), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 15/70 (21%)
Query: 138 LKCSLCNTLFKEAVMIPCCQHSFCEKCIRLV---LVEKARCPKCF-----SSKCRLEDLL 189
L+C +C +FKE++M+ C HS+C+ C+ + L K RCP C+ SS L
Sbjct: 14 LQCPICLEVFKESLMLQ-CGHSYCKGCLVSLSYHLDTKVRCPMCWQVVDGSSS------L 66
Query: 190 PNVSLRQAIE 199
PNVSL IE
Sbjct: 67 PNVSLAWVIE 76
>sp|Q99PJ2|TRIM8_MOUSE Probable E3 ubiquitin-protein ligase TRIM8 OS=Mus musculus GN=Trim8
PE=1 SV=3
Length = 551
Score = 42.0 bits (97), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 134 FPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKA---RCPKCFSSKCRLEDLLP 190
F EL C +C +F E V +PC +H+FC CI + + RCP+C + + L
Sbjct: 9 FEEELICPICLHVFVEPVQLPC-KHNFCRGCIGEAWAKDSGLVRCPECNQAYNQKPGLEK 67
Query: 191 NVSLRQAIEHF 201
N+ L +E F
Sbjct: 68 NLKLTNIVEKF 78
>sp|Q9BZR9|TRIM8_HUMAN Probable E3 ubiquitin-protein ligase TRIM8 OS=Homo sapiens GN=TRIM8
PE=1 SV=2
Length = 551
Score = 41.6 bits (96), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 134 FPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKA---RCPKCFSSKCRLEDLLP 190
F EL C +C +F E V +PC +H+FC CI + + RCP+C + + L
Sbjct: 9 FEEELICPICLHVFVEPVQLPC-KHNFCRGCIGEAWAKDSGLVRCPECNQAYNQKPGLEK 67
Query: 191 NVSLRQAIEHF 201
N+ L +E F
Sbjct: 68 NLKLTNIVEKF 78
>sp|Q4KLN8|RNF8_RAT E3 ubiquitin-protein ligase RNF8 OS=Rattus norvegicus GN=Rnf8 PE=2
SV=1
Length = 487
Score = 41.6 bits (96), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 102 DLLQTESKSDVPQFMKLELVIKTNASAMENGNFPSELKCSLCNTLFKEAVMIPCCQHSFC 161
+L +T+ + D Q K E++ N +EN EL+C +C+ F EAV + C HSFC
Sbjct: 373 ELERTKEEKDKVQAQKEEVLSHMN-DVLEN-----ELQCIICSEYFIEAVTLNCA-HSFC 425
Query: 162 EKCIRLVLVEKARCPKC 178
CI + K CP C
Sbjct: 426 SFCISEWMKRKVECPIC 442
>sp|Q8TEJ3|SH3R3_HUMAN SH3 domain-containing RING finger protein 3 OS=Homo sapiens
GN=SH3RF3 PE=1 SV=2
Length = 882
Score = 40.4 bits (93), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 129 MENGNFPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEK--ARCPKC-FSSKCRL 185
M+ + L+CS+C + CQH+FC +C+ ++ + RCP+C C +
Sbjct: 46 MDESSLLDLLECSVCLERLDTTAKVLPCQHTFCRRCLESIVCSRHELRCPECRILVGCGV 105
Query: 186 EDLLPNVSLRQAIE 199
++L N+ L + ++
Sbjct: 106 DELPANILLVRLLD 119
>sp|Q922Y2|TRI59_MOUSE Tripartite motif-containing protein 59 OS=Mus musculus GN=Trim59
PE=2 SV=2
Length = 403
Score = 39.7 bits (91), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 17/85 (20%)
Query: 133 NFPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKA------------RCPKCFS 180
NF EL C +C ++F++ ++P C H+FC C+ VL +CP C S
Sbjct: 3 NFEEELTCPICYSIFEDPRVLP-CSHTFCRNCLENVLQASGNFYIWRPLRIPLKCPNCRS 61
Query: 181 ----SKCRLEDLLPNVSLRQAIEHF 201
+ +E L N +LR IE +
Sbjct: 62 IIEIASTGIESLPVNFALRAIIEKY 86
>sp|O60106|YOXA_SCHPO LON peptidase N-terminal domain and RING finger protein C14F5.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC14F5.10c PE=4 SV=1
Length = 486
Score = 39.7 bits (91), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 9/70 (12%)
Query: 109 KSDVPQFMKLELVIKTNASAMENGNFPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLV 168
++ V +F+ +E +++ N S EL+C +C + + V+ PC H+FC C+
Sbjct: 146 ETAVAEFLHMEDLLQENVS--------RELECQICFGMLYDPVVSPC-GHTFCGPCLMQA 196
Query: 169 LVEKARCPKC 178
L + +CP C
Sbjct: 197 LTQSPQCPTC 206
>sp|Q6P256|CHFR_XENTR E3 ubiquitin-protein ligase CHFR OS=Xenopus tropicalis GN=chfr PE=2
SV=1
Length = 626
Score = 39.7 bits (91), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 138 LKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKARCPKCFSSKCRLEDLLPNVSLRQA 197
L C +C L + V + C H+FC C + + CP C +C +E + N L
Sbjct: 265 LTCIICQELLHDCVSLQPCMHTFCAACYSGWMERSSLCPTC---RCPVERICKNHILNNL 321
Query: 198 IEHFL 202
+E +L
Sbjct: 322 VEAYL 326
>sp|O15344|TRI18_HUMAN Midline-1 OS=Homo sapiens GN=MID1 PE=1 SV=1
Length = 667
Score = 39.3 bits (90), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 18/115 (15%)
Query: 136 SELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKA------------RCPKC----F 179
SEL C +C LF++ +++P C HS C C +LV +CP C
Sbjct: 6 SELTCPICLELFEDPLLLP-CAHSLCFNCAHRILVSHCATNESVESITAFQCPTCRHVIT 64
Query: 180 SSKCRLEDLLPNVSLRQAIEHFLESQILISGSENAYHR-YAPDGESGIQAKDVSC 233
S+ L+ L NV+L+ I+ F ++ + S + R A D + A+ V C
Sbjct: 65 LSQRGLDGLKRNVTLQNIIDRFQKASVSGPNSPSETRRERAFDANTMTSAEKVLC 119
>sp|O70583|TRI18_MOUSE Midline-1 OS=Mus musculus GN=Mid1 PE=1 SV=2
Length = 680
Score = 39.3 bits (90), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 17/90 (18%)
Query: 133 NFPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKA------------RCPKC-- 178
SEL C +C LF++ +++P C HS C C +LV +CP C
Sbjct: 3 TLESELTCPICLELFEDPLLLP-CAHSLCFNCAHRILVSHCATNEPVESINAFQCPTCRH 61
Query: 179 --FSSKCRLEDLLPNVSLRQAIEHFLESQI 206
S+ L+ L NV+L+ I+ F ++ +
Sbjct: 62 VITLSQRGLDGLKRNVTLQNIIDRFQKASV 91
>sp|Q9QUS6|TRIM1_MOUSE Probable E3 ubiquitin-protein ligase MID2 OS=Mus musculus GN=Mid2
PE=2 SV=2
Length = 705
Score = 39.3 bits (90), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 21/102 (20%)
Query: 125 NASA----MENGNFPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKA------- 173
NASA ++ SEL C +C LF++ +++P C HS C C +LV
Sbjct: 11 NASAGLFSLKMETLESELTCPICLELFEDPLLLP-CAHSLCFSCAHRILVSSCSSGESIE 69
Query: 174 -----RCPKC---FSSKCR-LEDLLPNVSLRQAIEHFLESQI 206
+CP C S R L+ L NV+L+ I+ F ++ +
Sbjct: 70 PITAFQCPTCRYVISLNHRGLDGLKRNVTLQNIIDRFQKASV 111
>sp|Q96EP1|CHFR_HUMAN E3 ubiquitin-protein ligase CHFR OS=Homo sapiens GN=CHFR PE=1 SV=2
Length = 664
Score = 39.3 bits (90), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 126 ASAMENGNFPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKARCPKCFSSKCRL 185
A+A + L C +C L + V + C H+FC C + + CP C +C +
Sbjct: 290 AAAGKPDKMEETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSSLCPTC---RCPV 346
Query: 186 EDLLPNVSLRQAIEHFL 202
E + N L +E +L
Sbjct: 347 ERICKNHILNNLVEAYL 363
>sp|Q8IWR1|TRI59_HUMAN Tripartite motif-containing protein 59 OS=Homo sapiens GN=TRIM59
PE=2 SV=1
Length = 403
Score = 39.3 bits (90), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 17/85 (20%)
Query: 133 NFPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKA------------RCPKCFS 180
NF EL C +C ++F++ ++P C H+FC C+ +L +CP C S
Sbjct: 3 NFEEELTCPICYSIFEDPRVLP-CSHTFCRNCLENILQASGNFYIWRPLRIPLKCPNCRS 61
Query: 181 ----SKCRLEDLLPNVSLRQAIEHF 201
+ +E L N +LR IE +
Sbjct: 62 ITEIAPTGIESLPVNFALRAIIEKY 86
>sp|P82458|TRI18_RAT Midline-1 OS=Rattus norvegicus GN=Mid1 PE=2 SV=1
Length = 667
Score = 38.9 bits (89), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 17/87 (19%)
Query: 136 SELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKA------------RCPKC----F 179
SEL C +C LF++ +++P C HS C C +LV +CP C
Sbjct: 6 SELTCPICLELFEDPLLLP-CAHSLCFNCAHRILVSHCATNEPVESINAFQCPTCRHVIT 64
Query: 180 SSKCRLEDLLPNVSLRQAIEHFLESQI 206
S+ L+ L NV+L+ I+ F ++ +
Sbjct: 65 LSQRGLDGLKRNVTLQNIIDRFQKASV 91
>sp|Q810I1|TRI50_RAT E3 ubiquitin-protein ligase TRIM50 OS=Rattus norvegicus GN=Trim50
PE=2 SV=1
Length = 483
Score = 38.9 bits (89), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 137 ELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLV---LVEKARCPKCFSS-KCRLEDLLPNV 192
+L+C +C +FKE +M+ C HS+C+ C+ + L + RCP C S C PNV
Sbjct: 13 QLQCPICLEVFKEPLMLQ-CGHSYCKNCLDSLSEHLDSELRCPVCRQSVDCSSSP--PNV 69
Query: 193 SLRQAIE 199
SL + I+
Sbjct: 70 SLARVID 76
>sp|Q5RF77|CHFR_PONAB E3 ubiquitin-protein ligase CHFR OS=Pongo abelii GN=CHFR PE=2 SV=1
Length = 571
Score = 38.5 bits (88), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 126 ASAMENGNFPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKARCPKCFSSKCRL 185
A+A + L C +C L + V + C H+FC C + + CP C +C +
Sbjct: 198 AAAGKPDKMEETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSSLCPTC---RCPV 254
Query: 186 EDLLPNVSLRQAIEHFL 202
E + N L +E +L
Sbjct: 255 ERICKNHILNNLVEAYL 271
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 270,453,050
Number of Sequences: 539616
Number of extensions: 12178854
Number of successful extensions: 36163
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 1003
Number of HSP's that attempted gapping in prelim test: 31279
Number of HSP's gapped (non-prelim): 3694
length of query: 685
length of database: 191,569,459
effective HSP length: 124
effective length of query: 561
effective length of database: 124,657,075
effective search space: 69932619075
effective search space used: 69932619075
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 65 (29.6 bits)