Query 035975
Match_columns 685
No_of_seqs 399 out of 2195
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 08:10:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035975.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035975hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5222 Uncharacterized conser 99.3 1E-12 2.2E-17 136.9 5.1 131 66-203 204-341 (427)
2 smart00504 Ubox Modified RING 99.1 5.1E-11 1.1E-15 96.3 4.8 62 137-200 1-62 (63)
3 PF04564 U-box: U-box domain; 99.1 9.2E-11 2E-15 99.6 5.0 69 135-205 2-71 (73)
4 TIGR00599 rad18 DNA repair pro 99.0 1.7E-10 3.8E-15 125.6 5.9 72 132-205 21-92 (397)
5 PF15227 zf-C3HC4_4: zinc fing 99.0 2E-10 4.3E-15 88.6 2.6 38 140-178 1-42 (42)
6 KOG2177 Predicted E3 ubiquitin 99.0 2.7E-10 5.8E-15 110.1 3.6 101 132-237 8-112 (386)
7 KOG0287 Postreplication repair 98.9 6E-10 1.3E-14 118.1 2.3 69 133-203 19-87 (442)
8 PLN03208 E3 ubiquitin-protein 98.7 5.9E-09 1.3E-13 104.1 3.3 57 132-190 13-85 (193)
9 PF13923 zf-C3HC4_2: Zinc fing 98.7 1.1E-08 2.5E-13 76.8 2.5 38 140-178 1-39 (39)
10 PF14835 zf-RING_6: zf-RING of 98.6 7.5E-09 1.6E-13 87.1 0.8 62 134-198 4-65 (65)
11 KOG0320 Predicted E3 ubiquitin 98.6 2.2E-08 4.9E-13 98.7 3.9 46 136-182 130-177 (187)
12 COG5432 RAD18 RING-finger-cont 98.6 2.1E-08 4.6E-13 104.9 2.9 70 133-204 21-90 (391)
13 PF13920 zf-C3HC4_3: Zinc fing 98.5 5.8E-08 1.3E-12 76.5 2.6 46 136-182 1-47 (50)
14 PF00097 zf-C3HC4: Zinc finger 98.5 1E-07 2.2E-12 71.6 2.7 38 140-178 1-41 (41)
15 PF13639 zf-RING_2: Ring finge 98.4 9.2E-08 2E-12 73.4 2.0 40 139-179 2-44 (44)
16 KOG0823 Predicted E3 ubiquitin 98.4 1.1E-07 2.3E-12 97.0 2.4 53 136-190 46-101 (230)
17 PHA02929 N1R/p28-like protein; 98.4 1.8E-07 3.9E-12 96.4 3.7 48 134-182 171-226 (238)
18 KOG0317 Predicted E3 ubiquitin 98.3 3.8E-07 8.3E-12 95.6 3.3 46 135-181 237-282 (293)
19 cd00162 RING RING-finger (Real 98.3 7.8E-07 1.7E-11 65.5 3.3 42 139-180 1-43 (45)
20 PF13445 zf-RING_UBOX: RING-ty 98.2 5.2E-07 1.1E-11 70.5 2.1 35 140-176 1-43 (43)
21 smart00184 RING Ring finger. E 98.1 1.6E-06 3.4E-11 61.7 2.9 38 140-178 1-39 (39)
22 KOG2660 Locus-specific chromos 98.1 9.9E-07 2.1E-11 93.9 2.3 71 132-202 10-83 (331)
23 KOG0311 Predicted E3 ubiquitin 98.1 4.5E-07 9.8E-12 97.2 -0.4 72 132-203 38-110 (381)
24 PF14634 zf-RING_5: zinc-RING 98.1 1.8E-06 4E-11 66.7 2.5 41 139-180 1-44 (44)
25 KOG2164 Predicted E3 ubiquitin 98.1 2E-06 4.4E-11 95.8 3.7 52 137-190 186-242 (513)
26 KOG4367 Predicted Zn-finger pr 98.1 1.4E-06 3E-11 95.4 2.3 102 134-240 1-194 (699)
27 PHA02926 zinc finger-like prot 97.9 4.6E-06 9.9E-11 85.3 2.9 48 134-181 167-228 (242)
28 COG5574 PEX10 RING-finger-cont 97.7 1.3E-05 2.7E-10 83.6 2.1 46 136-182 214-261 (271)
29 KOG4159 Predicted E3 ubiquitin 97.7 2E-05 4.3E-10 86.7 3.6 71 132-203 79-153 (398)
30 KOG0978 E3 ubiquitin ligase in 97.7 1.3E-05 2.8E-10 92.9 0.8 54 133-188 639-693 (698)
31 PF12678 zf-rbx1: RING-H2 zinc 97.5 5.7E-05 1.2E-09 64.7 3.0 44 134-179 17-73 (73)
32 TIGR00570 cdk7 CDK-activating 97.5 0.00012 2.6E-09 78.3 5.9 61 137-199 3-73 (309)
33 KOG0297 TNF receptor-associate 97.4 0.00012 2.5E-09 80.5 3.5 66 132-198 16-82 (391)
34 KOG2879 Predicted E3 ubiquitin 97.3 0.00021 4.5E-09 75.1 3.6 49 133-181 235-285 (298)
35 PF00098 zf-CCHC: Zinc knuckle 97.2 0.00015 3.3E-09 47.2 1.6 18 363-380 1-18 (18)
36 PF11789 zf-Nse: Zinc-finger o 97.2 0.00018 3.8E-09 59.5 1.8 43 135-177 9-53 (57)
37 COG5152 Uncharacterized conser 97.2 0.00018 3.9E-09 72.7 2.1 59 137-198 196-254 (259)
38 KOG0802 E3 ubiquitin ligase [P 97.2 0.00017 3.7E-09 82.0 1.9 45 135-180 289-338 (543)
39 KOG1813 Predicted E3 ubiquitin 96.9 0.00053 1.2E-08 72.8 2.4 59 137-198 241-299 (313)
40 KOG0824 Predicted E3 ubiquitin 96.8 0.00058 1.3E-08 72.7 2.2 45 137-182 7-52 (324)
41 PF13696 zf-CCHC_2: Zinc knuck 96.8 0.00059 1.3E-08 50.7 1.4 22 362-383 8-29 (32)
42 COG5243 HRD1 HRD ubiquitin lig 96.0 0.0045 9.7E-08 67.7 2.9 46 135-181 285-343 (491)
43 KOG4628 Predicted E3 ubiquitin 95.7 0.0061 1.3E-07 66.5 2.7 44 138-182 230-277 (348)
44 KOG1039 Predicted E3 ubiquitin 95.5 0.0069 1.5E-07 66.0 1.9 45 135-180 159-218 (344)
45 KOG1002 Nucleotide excision re 95.3 0.0068 1.5E-07 68.7 1.4 48 132-180 531-583 (791)
46 KOG4692 Predicted E3 ubiquitin 94.8 0.015 3.3E-07 63.3 2.1 46 135-181 420-465 (489)
47 KOG0804 Cytoplasmic Zn-finger 94.7 0.017 3.7E-07 64.5 2.2 108 63-180 103-219 (493)
48 COG5540 RING-finger-containing 94.6 0.023 5E-07 61.0 2.8 44 137-181 323-370 (374)
49 COG5180 PBP1 Protein interacti 94.5 0.064 1.4E-06 60.4 6.1 26 418-443 563-589 (654)
50 KOG0825 PHD Zn-finger protein 94.2 0.032 6.9E-07 65.8 3.0 46 137-183 123-171 (1134)
51 KOG4265 Predicted E3 ubiquitin 93.9 0.032 7E-07 60.8 2.4 46 135-181 288-334 (349)
52 KOG1924 RhoA GTPase effector D 93.8 0.16 3.5E-06 60.3 7.6 18 31-48 50-67 (1102)
53 KOG4172 Predicted E3 ubiquitin 93.6 0.019 4.1E-07 47.9 -0.1 43 138-181 8-52 (62)
54 KOG4185 Predicted E3 ubiquitin 93.0 0.079 1.7E-06 55.5 3.3 64 137-201 3-77 (296)
55 KOG3161 Predicted E3 ubiquitin 92.7 0.047 1E-06 63.3 1.3 57 134-194 8-72 (861)
56 PF05290 Baculo_IE-1: Baculovi 92.5 0.076 1.6E-06 51.2 2.2 46 136-181 79-130 (140)
57 PF12861 zf-Apc11: Anaphase-pr 92.5 0.11 2.4E-06 46.7 3.0 46 136-181 20-80 (85)
58 KOG1924 RhoA GTPase effector D 92.2 0.45 9.7E-06 56.8 8.2 10 440-449 587-596 (1102)
59 KOG1645 RING-finger-containing 92.0 0.1 2.2E-06 58.1 2.6 57 137-195 4-67 (463)
60 KOG1785 Tyrosine kinase negati 91.8 0.066 1.4E-06 59.4 1.0 44 138-182 370-415 (563)
61 PF04641 Rtf2: Rtf2 RING-finge 91.3 0.14 3.1E-06 53.5 2.8 53 134-188 110-166 (260)
62 KOG3039 Uncharacterized conser 91.2 0.14 3.1E-06 53.8 2.6 45 136-181 220-268 (303)
63 KOG4275 Predicted E3 ubiquitin 90.9 0.071 1.5E-06 57.2 0.1 40 137-181 300-340 (350)
64 KOG1001 Helicase-like transcri 90.8 0.1 2.3E-06 61.5 1.4 41 138-180 455-497 (674)
65 KOG0826 Predicted E3 ubiquitin 90.7 0.13 2.7E-06 56.0 1.7 45 136-180 299-343 (357)
66 KOG1571 Predicted E3 ubiquitin 90.0 0.17 3.6E-06 55.5 2.0 47 131-181 299-345 (355)
67 PF14570 zf-RING_4: RING/Ubox 89.1 0.33 7.2E-06 39.4 2.6 42 140-181 1-46 (48)
68 KOG1814 Predicted E3 ubiquitin 88.4 0.32 6.9E-06 54.4 2.7 108 134-249 181-320 (445)
69 smart00343 ZnF_C2HC zinc finge 88.1 0.23 5.1E-06 34.5 1.0 17 364-380 1-17 (26)
70 KOG2893 Zn finger protein [Gen 88.0 1.6 3.5E-05 46.1 7.3 8 483-490 235-242 (341)
71 KOG3002 Zn finger protein [Gen 87.9 0.4 8.6E-06 51.7 3.0 60 134-201 45-105 (299)
72 PF07800 DUF1644: Protein of u 87.2 0.57 1.2E-05 46.6 3.3 20 136-155 1-20 (162)
73 KOG0314 Predicted E3 ubiquitin 85.5 0.47 1E-05 53.7 2.1 72 131-203 213-286 (448)
74 PF14447 Prok-RING_4: Prokaryo 85.1 0.51 1.1E-05 39.4 1.6 45 135-182 5-49 (55)
75 KOG4739 Uncharacterized protei 84.8 0.32 6.9E-06 50.9 0.4 61 138-203 4-65 (233)
76 KOG0132 RNA polymerase II C-te 84.6 5.4 0.00012 48.0 10.1 22 460-481 704-725 (894)
77 KOG3800 Predicted E3 ubiquitin 84.5 0.79 1.7E-05 49.3 3.1 50 139-190 2-57 (300)
78 KOG4849 mRNA cleavage factor I 84.3 3.1 6.6E-05 46.1 7.4 26 466-491 345-370 (498)
79 KOG3039 Uncharacterized conser 83.6 0.71 1.5E-05 48.8 2.3 38 132-170 38-75 (303)
80 PTZ00368 universal minicircle 83.6 0.63 1.4E-05 44.4 1.8 19 362-380 129-147 (148)
81 KOG4362 Transcriptional regula 83.3 0.41 9E-06 56.5 0.5 66 134-201 18-86 (684)
82 COG5219 Uncharacterized conser 83.2 0.54 1.2E-05 57.1 1.4 48 134-181 1466-1521(1525)
83 KOG2817 Predicted E3 ubiquitin 82.9 0.81 1.8E-05 51.0 2.5 45 135-180 332-382 (394)
84 KOG0828 Predicted E3 ubiquitin 82.6 0.71 1.5E-05 52.8 1.9 47 134-181 568-632 (636)
85 KOG1734 Predicted RING-contain 80.4 0.52 1.1E-05 50.4 -0.1 47 135-182 222-280 (328)
86 KOG0827 Predicted E3 ubiquitin 80.2 0.87 1.9E-05 50.8 1.5 42 138-179 5-52 (465)
87 KOG0298 DEAD box-containing he 78.2 0.99 2.2E-05 56.4 1.3 48 132-180 1148-1196(1394)
88 KOG2236 Uncharacterized conser 78.2 14 0.00031 42.3 10.1 11 406-416 419-429 (483)
89 COG5236 Uncharacterized conser 77.9 1.7 3.7E-05 48.0 2.9 47 134-181 58-106 (493)
90 PHA03096 p28-like protein; Pro 77.7 1.2 2.6E-05 47.8 1.7 43 138-180 179-231 (284)
91 smart00744 RINGv The RING-vari 76.3 2.1 4.7E-05 34.3 2.3 40 139-179 1-49 (49)
92 PF11793 FANCL_C: FANCL C-term 74.7 1 2.2E-05 38.6 0.2 45 137-181 2-64 (70)
93 KOG0132 RNA polymerase II C-te 74.6 8.5 0.00018 46.4 7.5 17 461-477 689-705 (894)
94 KOG4642 Chaperone-dependent E3 73.2 4.8 0.0001 43.0 4.6 74 130-205 204-278 (284)
95 COG5222 Uncharacterized conser 73.1 1.8 4E-05 46.9 1.6 24 362-385 176-199 (427)
96 PF07777 MFMR: G-box binding p 73.0 9.1 0.0002 39.2 6.4 41 379-423 30-71 (189)
97 COG5180 PBP1 Protein interacti 72.8 6.8 0.00015 45.0 5.9 31 419-451 544-574 (654)
98 PF14392 zf-CCHC_4: Zinc knuck 71.6 1.7 3.8E-05 34.7 0.8 38 342-379 11-48 (49)
99 PTZ00368 universal minicircle 70.7 2.2 4.9E-05 40.7 1.4 20 362-381 52-71 (148)
100 COG5194 APC11 Component of SCF 69.4 3.8 8.1E-05 36.9 2.4 32 151-182 49-80 (88)
101 KOG4849 mRNA cleavage factor I 68.1 21 0.00045 39.9 8.2 15 409-423 262-276 (498)
102 COG5082 AIR1 Arginine methyltr 65.2 10 0.00022 38.8 4.9 15 364-378 99-113 (190)
103 PF13917 zf-CCHC_3: Zinc knuck 65.1 3.3 7.1E-05 32.9 1.1 19 362-380 4-22 (42)
104 KOG2930 SCF ubiquitin ligase, 62.7 4.4 9.5E-05 38.1 1.6 25 156-180 81-105 (114)
105 COG5082 AIR1 Arginine methyltr 60.9 3.9 8.5E-05 41.8 1.1 18 362-379 60-77 (190)
106 KOG1984 Vesicle coat complex C 60.8 40 0.00086 41.6 9.2 28 369-396 22-50 (1007)
107 COG5175 MOT2 Transcriptional r 58.5 5.7 0.00012 44.0 1.8 45 136-181 14-62 (480)
108 COG5109 Uncharacterized conser 58.1 6.7 0.00015 43.1 2.3 46 134-180 333-384 (396)
109 PF02891 zf-MIZ: MIZ/SP-RING z 56.4 8.6 0.00019 31.1 2.1 43 137-180 2-49 (50)
110 KOG2375 Protein interacting wi 55.7 45 0.00097 40.6 8.6 16 446-467 635-650 (756)
111 KOG4400 E3 ubiquitin ligase in 55.6 7.9 0.00017 40.4 2.3 16 365-380 146-161 (261)
112 PF10367 Vps39_2: Vacuolar sor 55.5 4.3 9.3E-05 35.7 0.3 33 133-166 74-108 (109)
113 KOG2932 E3 ubiquitin ligase in 52.8 5.8 0.00013 43.4 0.8 40 138-180 91-131 (389)
114 PF06495 Transformer: Fruit fl 51.7 15 0.00033 37.3 3.4 13 429-441 153-165 (182)
115 KOG3579 Predicted E3 ubiquitin 49.1 16 0.00034 39.9 3.2 37 136-172 267-306 (352)
116 KOG1941 Acetylcholine receptor 47.8 7.1 0.00015 43.9 0.5 43 137-180 365-413 (518)
117 KOG3970 Predicted E3 ubiquitin 47.8 16 0.00036 38.6 3.1 51 137-188 50-110 (299)
118 KOG1812 Predicted E3 ubiquitin 47.4 12 0.00026 41.8 2.2 34 137-171 146-183 (384)
119 KOG1902 Putative signal transd 46.1 33 0.00071 38.3 5.1 7 397-403 317-323 (441)
120 PF03854 zf-P11: P-11 zinc fin 46.0 9.4 0.0002 31.4 0.8 36 146-181 9-44 (50)
121 KOG4577 Transcription factor L 45.1 1.3E+02 0.0029 33.1 9.3 30 136-165 32-64 (383)
122 KOG1940 Zn-finger protein [Gen 44.6 14 0.0003 39.9 2.0 43 137-180 158-204 (276)
123 KOG2114 Vacuolar assembly/sort 43.9 13 0.00029 45.3 2.0 42 136-180 839-880 (933)
124 KOG3598 Thyroid hormone recept 42.3 35 0.00076 44.2 5.1 12 466-477 2076-2087(2220)
125 PF04216 FdhE: Protein involve 42.1 6.7 0.00015 41.6 -0.7 44 137-180 172-219 (290)
126 PF10272 Tmpp129: Putative tra 41.1 16 0.00035 40.7 2.0 28 157-184 312-352 (358)
127 KOG2042 Ubiquitin fusion degra 40.5 34 0.00073 42.6 4.6 73 132-205 865-937 (943)
128 KOG1815 Predicted E3 ubiquitin 40.4 14 0.00031 41.6 1.5 36 135-171 68-104 (444)
129 PF14353 CpXC: CpXC protein 38.1 28 0.0006 32.5 2.8 44 137-181 1-47 (128)
130 PF15336 Auts2: Autism suscept 38.0 93 0.002 32.6 6.6 12 440-451 100-111 (212)
131 PF07777 MFMR: G-box binding p 37.6 53 0.0011 33.9 4.8 18 383-400 43-61 (189)
132 KOG2462 C2H2-type Zn-finger pr 36.2 6 0.00013 42.5 -2.2 90 135-247 159-268 (279)
133 TIGR01628 PABP-1234 polyadenyl 35.6 1.3E+02 0.0028 34.5 8.1 7 186-192 184-190 (562)
134 KOG4400 E3 ubiquitin ligase in 34.3 18 0.00038 37.9 0.9 23 362-384 156-186 (261)
135 PF05605 zf-Di19: Drought indu 34.2 18 0.00039 29.2 0.8 37 136-180 1-39 (54)
136 COG5220 TFB3 Cdk activating ki 33.3 16 0.00035 39.0 0.4 44 137-180 10-61 (314)
137 PF05883 Baculo_RING: Baculovi 32.9 21 0.00045 34.9 1.1 44 137-180 26-77 (134)
138 PHA02862 5L protein; Provision 32.4 32 0.0007 34.2 2.3 42 139-182 4-52 (156)
139 KOG4594 Sequence-specific sing 32.4 1.9E+02 0.0041 32.0 8.1 13 418-430 143-155 (354)
140 PF12906 RINGv: RING-variant d 32.2 36 0.00079 27.1 2.2 35 140-178 1-47 (47)
141 KOG1100 Predicted E3 ubiquitin 32.0 19 0.0004 37.2 0.6 36 140-180 161-197 (207)
142 KOG0119 Splicing factor 1/bran 32.0 1.6E+02 0.0036 34.5 7.9 22 363-384 286-307 (554)
143 KOG1984 Vesicle coat complex C 31.5 3.1E+02 0.0067 34.5 10.4 9 423-431 192-200 (1007)
144 PRK06266 transcription initiat 30.9 56 0.0012 32.9 3.7 53 135-203 115-167 (178)
145 PF07191 zinc-ribbons_6: zinc- 29.9 8.5 0.00019 33.7 -1.9 39 137-181 1-39 (70)
146 KOG2169 Zn-finger transcriptio 29.6 49 0.0011 39.4 3.6 71 132-203 301-375 (636)
147 TIGR01562 FdhE formate dehydro 29.5 15 0.00033 40.0 -0.5 43 137-180 184-232 (305)
148 PF08746 zf-RING-like: RING-li 29.2 51 0.0011 25.9 2.5 38 140-178 1-43 (43)
149 PF05660 DUF807: Coxiella burn 28.7 35 0.00077 33.1 1.8 33 11-43 46-79 (142)
150 KOG4672 Uncharacterized conser 28.5 2.1E+02 0.0047 32.9 7.9 41 397-444 326-368 (487)
151 KOG1902 Putative signal transd 28.3 88 0.0019 35.2 4.9 13 397-409 309-321 (441)
152 KOG2236 Uncharacterized conser 28.3 1.3E+02 0.0028 35.0 6.3 9 399-407 424-432 (483)
153 TIGR01628 PABP-1234 polyadenyl 27.7 1.5E+02 0.0032 34.2 6.8 8 192-199 193-200 (562)
154 PF10235 Cript: Microtubule-as 26.7 36 0.00078 31.2 1.4 37 137-183 44-80 (90)
155 PF08844 DUF1815: Domain of un 26.5 27 0.00058 32.5 0.6 8 362-369 32-39 (105)
156 KOG2673 Uncharacterized conser 26.2 34 0.00073 39.4 1.4 18 362-380 129-146 (485)
157 COG3813 Uncharacterized protei 26.2 58 0.0013 29.1 2.5 42 149-194 21-62 (84)
158 KOG4445 Uncharacterized conser 25.9 21 0.00045 39.2 -0.3 34 136-170 114-150 (368)
159 KOG3899 Uncharacterized conser 25.8 35 0.00076 37.4 1.4 30 30-59 189-218 (381)
160 KOG3113 Uncharacterized conser 25.5 49 0.0011 35.7 2.3 55 135-191 109-166 (293)
161 KOG1493 Anaphase-promoting com 25.5 21 0.00044 32.2 -0.3 32 150-181 45-79 (84)
162 PRK14559 putative protein seri 25.4 41 0.00088 40.3 1.9 21 138-165 2-22 (645)
163 PF13966 zf-RVT: zinc-binding 25.3 39 0.00085 29.3 1.4 21 362-382 59-83 (86)
164 PF04959 ARS2: Arsenite-resist 25.1 24 0.00052 36.8 0.0 11 460-470 198-208 (214)
165 PF10497 zf-4CXXC_R1: Zinc-fin 24.4 56 0.0012 30.4 2.3 59 137-196 7-90 (105)
166 KOG2375 Protein interacting wi 24.2 2.8E+02 0.006 34.2 8.3 16 302-317 435-451 (756)
167 PRK03564 formate dehydrogenase 23.2 26 0.00056 38.4 -0.2 44 136-180 186-234 (309)
168 PHA02825 LAP/PHD finger-like p 23.2 68 0.0015 32.4 2.7 47 135-182 6-58 (162)
169 KOG3168 U1 snRNP component [Tr 22.8 1.7E+02 0.0037 29.9 5.4 30 397-427 127-157 (177)
170 KOG1428 Inhibitor of type V ad 22.8 78 0.0017 41.5 3.6 44 137-181 3486-3542(3738)
171 PRK04023 DNA polymerase II lar 22.6 66 0.0014 40.5 3.0 61 137-202 626-691 (1121)
172 KOG0608 Warts/lats-like serine 22.0 3.4E+02 0.0074 33.5 8.4 22 427-450 250-271 (1034)
173 KOG4185 Predicted E3 ubiquitin 20.5 28 0.00062 36.6 -0.5 42 138-180 208-264 (296)
174 PF06906 DUF1272: Protein of u 20.2 71 0.0015 27.2 1.8 40 139-181 7-50 (57)
175 PF09538 FYDLN_acid: Protein o 20.0 70 0.0015 30.0 2.0 7 174-180 28-34 (108)
No 1
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=99.32 E-value=1e-12 Score=136.89 Aligned_cols=131 Identities=26% Similarity=0.527 Sum_probs=99.8
Q ss_pred cCccCCCCCCCccccccccchHHHHhcccccchhhhhhhhccCCCChhhhHhHHHHHhhccccc------ccCCCCCccc
Q 035975 66 DTTRTSEPHNTGCQKLEASNVNEAIRRGAVHSRIEEDLLQTESKSDVPQFMKLELVIKTNASAM------ENGNFPSELK 139 (685)
Q Consensus 66 RvkRSSgip~S~lqkVessdleeAl~~givV~kvd~~a~~tksqPd~qe~kk~E~~~ss~asa~------~~e~LeeeLt 139 (685)
|+.|+||||+.|+..|+..... ....+++ ..++..+ ..+|+.++|++++...++.+... ...+| .|.
T Consensus 204 RirrttGIPk~FLk~ve~p~e~--~~a~imi-t~EG~yV--v~qpdvqsWe~Yq~r~~a~~~~~Dqv~k~~~~~i--~Lk 276 (427)
T COG5222 204 RIRRTTGIPKDFLKPVEGPNEP--SNAAIMI-TPEGGYV--VAQPDVQSWEKYQQRTKAVAEIPDQVYKMQPPNI--SLK 276 (427)
T ss_pred eeeccCCCCHHhcccccCCCcc--cccceEE-cCCCCeE--EeccchHHHHHHHHHHHhhhhCchhhhccCCCCc--ccc
Confidence 7899999999999999975443 1233444 4444444 57899999999988665533210 01122 399
Q ss_pred ccccccccccceeccCCCCccchhHHHHHhhc-CCCCCCCcCCCccccCCCccHHHHHHHHHHHh
Q 035975 140 CSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVE-KARCPKCFSSKCRLEDLLPNVSLRQAIEHFLE 203 (685)
Q Consensus 140 CPIClelf~dPVtLpCCGHSFC~~CI~~~lk~-~~sCPvCR~~~~~~~~L~pN~~L~nLVe~~re 203 (685)
||+|..++.+|+.|+||+|+||..||...+.. .+.||.|...-...+.|.+++....-|+.+++
T Consensus 277 Cplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lk 341 (427)
T COG5222 277 CPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALK 341 (427)
T ss_pred CcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHH
Confidence 99999999999999999999999999977765 48999999877778899998888777777655
No 2
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.13 E-value=5.1e-11 Score=96.32 Aligned_cols=62 Identities=26% Similarity=0.501 Sum_probs=56.3
Q ss_pred cccccccccccccceeccCCCCccchhHHHHHhhcCCCCCCCcCCCccccCCCccHHHHHHHHH
Q 035975 137 ELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKARCPKCFSSKCRLEDLLPNVSLRQAIEH 200 (685)
Q Consensus 137 eLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~~~sCPvCR~~~~~~~~L~pN~~L~nLVe~ 200 (685)
+|.||||++++.+|+.++| ||+||+.||..|+.....||.|+. .....++.+|..|++.|+.
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~-G~v~~~~~i~~~~~~~~~cP~~~~-~~~~~~l~~~~~l~~~i~~ 62 (63)
T smart00504 1 EFLCPISLEVMKDPVILPS-GQTYERRAIEKWLLSHGTDPVTGQ-PLTHEDLIPNLALKSAIQE 62 (63)
T ss_pred CcCCcCCCCcCCCCEECCC-CCEEeHHHHHHHHHHCCCCCCCcC-CCChhhceeCHHHHHHHHh
Confidence 4789999999999999998 999999999999988889999997 4567889999999998864
No 3
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.10 E-value=9.2e-11 Score=99.59 Aligned_cols=69 Identities=26% Similarity=0.489 Sum_probs=57.7
Q ss_pred CCcccccccccccccceeccCCCCccchhHHHHHhhc-CCCCCCCcCCCccccCCCccHHHHHHHHHHHhhc
Q 035975 135 PSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVE-KARCPKCFSSKCRLEDLLPNVSLRQAIEHFLESQ 205 (685)
Q Consensus 135 eeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~-~~sCPvCR~~~~~~~~L~pN~~L~nLVe~~redq 205 (685)
.++|.||||+++|.+||++++ ||+|++.||..|+.. ...||.|+. ......|.+|..|++.|+.|...+
T Consensus 2 P~~f~CpIt~~lM~dPVi~~~-G~tyer~~I~~~l~~~~~~~P~t~~-~l~~~~l~pn~~Lk~~I~~~~~~~ 71 (73)
T PF04564_consen 2 PDEFLCPITGELMRDPVILPS-GHTYERSAIERWLEQNGGTDPFTRQ-PLSESDLIPNRALKSAIEEWCAEN 71 (73)
T ss_dssp SGGGB-TTTSSB-SSEEEETT-SEEEEHHHHHHHHCTTSSB-TTT-S-B-SGGGSEE-HHHHHHHHHHHHHC
T ss_pred CcccCCcCcCcHhhCceeCCc-CCEEcHHHHHHHHHcCCCCCCCCCC-cCCcccceECHHHHHHHHHHHHHc
Confidence 578999999999999999998 999999999999998 679999986 566789999999999999998764
No 4
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.05 E-value=1.7e-10 Score=125.61 Aligned_cols=72 Identities=28% Similarity=0.674 Sum_probs=64.6
Q ss_pred CCCCCcccccccccccccceeccCCCCccchhHHHHHhhcCCCCCCCcCCCccccCCCccHHHHHHHHHHHhhc
Q 035975 132 GNFPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKARCPKCFSSKCRLEDLLPNVSLRQAIEHFLESQ 205 (685)
Q Consensus 132 e~LeeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~~~sCPvCR~~~~~~~~L~pN~~L~nLVe~~redq 205 (685)
..|+..+.|+||+++|.+|++++| ||+||..||..++.....||+|+.. +....+..|..|.+||+.|+...
T Consensus 21 ~~Le~~l~C~IC~d~~~~PvitpC-gH~FCs~CI~~~l~~~~~CP~Cr~~-~~~~~Lr~N~~L~~iVe~~~~~R 92 (397)
T TIGR00599 21 YPLDTSLRCHICKDFFDVPVLTSC-SHTFCSLCIRRCLSNQPKCPLCRAE-DQESKLRSNWLVSEIVESFKNLR 92 (397)
T ss_pred cccccccCCCcCchhhhCccCCCC-CCchhHHHHHHHHhCCCCCCCCCCc-cccccCccchHHHHHHHHHHHhh
Confidence 668889999999999999999998 9999999999999887789999974 55668999999999999997644
No 5
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.99 E-value=2e-10 Score=88.63 Aligned_cols=38 Identities=45% Similarity=1.180 Sum_probs=31.0
Q ss_pred ccccccccccceeccCCCCccchhHHHHHhhcC----CCCCCC
Q 035975 140 CSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEK----ARCPKC 178 (685)
Q Consensus 140 CPIClelf~dPVtLpCCGHSFC~~CI~~~lk~~----~sCPvC 178 (685)
||||+++|.+||+|+| ||+||..||..+++.. ..||+|
T Consensus 1 CpiC~~~~~~Pv~l~C-GH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPC-GHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SS-SSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCC-cCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999999999998 9999999999999864 479987
No 6
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=2.7e-10 Score=110.14 Aligned_cols=101 Identities=26% Similarity=0.532 Sum_probs=73.9
Q ss_pred CCCCCcccccccccccccceeccCCCCccchhHHHHHhhcCCCCCCCcCCCccccCCCccHHHHHHHHHHHhhccccc-C
Q 035975 132 GNFPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKARCPKCFSSKCRLEDLLPNVSLRQAIEHFLESQILIS-G 210 (685)
Q Consensus 132 e~LeeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~~~sCPvCR~~~~~~~~L~pN~~L~nLVe~~redq~~iC-s 210 (685)
..+.+++.|+||+++|.+|++++| ||+||..||..++.....||.||. ... .+.+|..+.++++.+.......- .
T Consensus 8 ~~~~~~~~C~iC~~~~~~p~~l~C-~H~~c~~C~~~~~~~~~~Cp~cr~-~~~--~~~~n~~l~~~~~~~~~~~~~~~~~ 83 (386)
T KOG2177|consen 8 EVLQEELTCPICLEYFREPVLLPC-GHNFCRACLTRSWEGPLSCPVCRP-PSR--NLRPNVLLANLVERLRQLRLSRPLG 83 (386)
T ss_pred hhccccccChhhHHHhhcCccccc-cchHhHHHHHHhcCCCcCCcccCC-chh--ccCccHHHHHHHHHHHhcCCccccc
Confidence 456789999999999999999998 999999999999985568999995 333 88899999999999987543211 0
Q ss_pred -c--cCCCCCCCCchhhHHHHHhhhhhhhc
Q 035975 211 -S--ENAYHRYAPDGESGIQAKDVSCAVTN 237 (685)
Q Consensus 211 -~--Eh~~H~~~paee~C~eCk~l~CaL~~ 237 (685)
. ....|... ...+|..|..+.|..+.
T Consensus 84 ~~~~~c~~~~~~-~~~~c~~~~~~~c~~c~ 112 (386)
T KOG2177|consen 84 SKEELCEKHGEE-LKLFCEEDEKLLCVLCR 112 (386)
T ss_pred ccchhhhhcCCc-ceEEecccccccCCCCC
Confidence 0 01112211 44567777766665544
No 7
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.88 E-value=6e-10 Score=118.12 Aligned_cols=69 Identities=30% Similarity=0.679 Sum_probs=62.9
Q ss_pred CCCCcccccccccccccceeccCCCCccchhHHHHHhhcCCCCCCCcCCCccccCCCccHHHHHHHHHHHh
Q 035975 133 NFPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKARCPKCFSSKCRLEDLLPNVSLRQAIEHFLE 203 (685)
Q Consensus 133 ~LeeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~~~sCPvCR~~~~~~~~L~pN~~L~nLVe~~re 203 (685)
.|...|+|-||+++|.-|+++|| +|+||.-||..++.....||.|+. .+....|+.|+.|.+||..|.-
T Consensus 19 ~lD~lLRC~IC~eyf~ip~itpC-sHtfCSlCIR~~L~~~p~CP~C~~-~~~Es~Lr~n~il~Eiv~S~~~ 87 (442)
T KOG0287|consen 19 TLDDLLRCGICFEYFNIPMITPC-SHTFCSLCIRKFLSYKPQCPTCCV-TVTESDLRNNRILDEIVKSLNF 87 (442)
T ss_pred hhHHHHHHhHHHHHhcCceeccc-cchHHHHHHHHHhccCCCCCceec-ccchhhhhhhhHHHHHHHHHHH
Confidence 46678999999999999999997 999999999999999999999996 5678889999999999998855
No 8
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.73 E-value=5.9e-09 Score=104.11 Aligned_cols=57 Identities=26% Similarity=0.633 Sum_probs=45.5
Q ss_pred CCCCCcccccccccccccceeccCCCCccchhHHHHHhhc----------------CCCCCCCcCCCccccCCCc
Q 035975 132 GNFPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVE----------------KARCPKCFSSKCRLEDLLP 190 (685)
Q Consensus 132 e~LeeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~----------------~~sCPvCR~~~~~~~~L~p 190 (685)
.++..++.|+||++.+++|++|+| ||.||..||..|+.. ...||+|+.. +....+.+
T Consensus 13 ~~~~~~~~CpICld~~~dPVvT~C-GH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~-Is~~~LvP 85 (193)
T PLN03208 13 VDSGGDFDCNICLDQVRDPVVTLC-GHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSD-VSEATLVP 85 (193)
T ss_pred ccCCCccCCccCCCcCCCcEEcCC-CchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCc-CChhcEEE
Confidence 345568999999999999999998 999999999999742 2479999974 33444444
No 9
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.67 E-value=1.1e-08 Score=76.85 Aligned_cols=38 Identities=39% Similarity=1.125 Sum_probs=32.9
Q ss_pred ccccccccccc-eeccCCCCccchhHHHHHhhcCCCCCCC
Q 035975 140 CSLCNTLFKEA-VMIPCCQHSFCEKCIRLVLVEKARCPKC 178 (685)
Q Consensus 140 CPIClelf~dP-VtLpCCGHSFC~~CI~~~lk~~~sCPvC 178 (685)
|+||++.+.+| +.++| ||+||..||.++++....||.|
T Consensus 1 C~iC~~~~~~~~~~~~C-GH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPC-GHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTT-SEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCC-CCchhHHHHHHHHHCcCCCcCC
Confidence 89999999999 56776 9999999999999988899987
No 10
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.63 E-value=7.5e-09 Score=87.12 Aligned_cols=62 Identities=34% Similarity=0.769 Sum_probs=34.1
Q ss_pred CCCcccccccccccccceeccCCCCccchhHHHHHhhcCCCCCCCcCCCccccCCCccHHHHHHH
Q 035975 134 FPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKARCPKCFSSKCRLEDLLPNVSLRQAI 198 (685)
Q Consensus 134 LeeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~~~sCPvCR~~~~~~~~L~pN~~L~nLV 198 (685)
++..|.|++|.++|++||.+.=|.|.||..||.+.+. ..||+|.. .....+++.|..|.+||
T Consensus 4 le~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~-Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 4 LEELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG--SECPVCHT-PAWIQDIQINRQLDSMI 65 (65)
T ss_dssp HHHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT--TB-SSS---B-S-SS----HHHHHHH
T ss_pred HHHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC--CCCCCcCC-hHHHHHHHhhhhhhccC
Confidence 3457899999999999997654599999999987654 45999996 56788999999999886
No 11
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=2.2e-08 Score=98.66 Aligned_cols=46 Identities=33% Similarity=0.803 Sum_probs=40.6
Q ss_pred Cccccccccccccc--ceeccCCCCccchhHHHHHhhcCCCCCCCcCCC
Q 035975 136 SELKCSLCNTLFKE--AVMIPCCQHSFCEKCIRLVLVEKARCPKCFSSK 182 (685)
Q Consensus 136 eeLtCPIClelf~d--PVtLpCCGHSFC~~CI~~~lk~~~sCPvCR~~~ 182 (685)
..+.||||++-+.+ |+.+.| ||.||..||...++....||+|++.+
T Consensus 130 ~~~~CPiCl~~~sek~~vsTkC-GHvFC~~Cik~alk~~~~CP~C~kkI 177 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTKC-GHVFCSQCIKDALKNTNKCPTCRKKI 177 (187)
T ss_pred cccCCCceecchhhcccccccc-chhHHHHHHHHHHHhCCCCCCccccc
Confidence 35899999999964 677898 99999999999999999999999743
No 12
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.59 E-value=2.1e-08 Score=104.91 Aligned_cols=70 Identities=26% Similarity=0.489 Sum_probs=61.3
Q ss_pred CCCCcccccccccccccceeccCCCCccchhHHHHHhhcCCCCCCCcCCCccccCCCccHHHHHHHHHHHhh
Q 035975 133 NFPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKARCPKCFSSKCRLEDLLPNVSLRQAIEHFLES 204 (685)
Q Consensus 133 ~LeeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~~~sCPvCR~~~~~~~~L~pN~~L~nLVe~~red 204 (685)
.|...+.|-||.++|..|+.|+| ||+||.-||.+++.+...||+||. .....-++.+..+..+++.|...
T Consensus 21 ~LDs~lrC~IC~~~i~ip~~TtC-gHtFCslCIR~hL~~qp~CP~Cr~-~~~esrlr~~s~~~ei~es~~~~ 90 (391)
T COG5432 21 GLDSMLRCRICDCRISIPCETTC-GHTFCSLCIRRHLGTQPFCPVCRE-DPCESRLRGSSGSREINESHARN 90 (391)
T ss_pred cchhHHHhhhhhheeecceeccc-ccchhHHHHHHHhcCCCCCccccc-cHHhhhcccchhHHHHHHhhhhc
Confidence 35567999999999999999998 999999999999999999999997 45566788889999998887653
No 13
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.51 E-value=5.8e-08 Score=76.53 Aligned_cols=46 Identities=33% Similarity=0.869 Sum_probs=40.4
Q ss_pred CcccccccccccccceeccCCCCc-cchhHHHHHhhcCCCCCCCcCCC
Q 035975 136 SELKCSLCNTLFKEAVMIPCCQHS-FCEKCIRLVLVEKARCPKCFSSK 182 (685)
Q Consensus 136 eeLtCPIClelf~dPVtLpCCGHS-FC~~CI~~~lk~~~sCPvCR~~~ 182 (685)
++..|.||++.+.+++.++| ||. ||..|+.+++.....||+||+.+
T Consensus 1 ~~~~C~iC~~~~~~~~~~pC-gH~~~C~~C~~~~~~~~~~CP~Cr~~i 47 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPC-GHLCFCEECAERLLKRKKKCPICRQPI 47 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETT-CEEEEEHHHHHHHHHTTSBBTTTTBB-
T ss_pred CcCCCccCCccCCceEEeCC-CChHHHHHHhHHhcccCCCCCcCChhh
Confidence 35789999999999999998 999 99999999999888999999753
No 14
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.45 E-value=1e-07 Score=71.64 Aligned_cols=38 Identities=42% Similarity=1.171 Sum_probs=34.6
Q ss_pred ccccccccccce-eccCCCCccchhHHHHHhh--cCCCCCCC
Q 035975 140 CSLCNTLFKEAV-MIPCCQHSFCEKCIRLVLV--EKARCPKC 178 (685)
Q Consensus 140 CPIClelf~dPV-tLpCCGHSFC~~CI~~~lk--~~~sCPvC 178 (685)
|+||++.+.+|+ +++| ||+||..||..++. ....||+|
T Consensus 1 C~iC~~~~~~~~~~~~C-~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPC-GHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTT-SEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecC-CCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 8887 99999999999998 34689988
No 15
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.43 E-value=9.2e-08 Score=73.40 Aligned_cols=40 Identities=35% Similarity=0.888 Sum_probs=35.0
Q ss_pred cccccccccc---cceeccCCCCccchhHHHHHhhcCCCCCCCc
Q 035975 139 KCSLCNTLFK---EAVMIPCCQHSFCEKCIRLVLVEKARCPKCF 179 (685)
Q Consensus 139 tCPIClelf~---dPVtLpCCGHSFC~~CI~~~lk~~~sCPvCR 179 (685)
.|+||++.|. .++.++| ||.||..||..|+.....||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C-~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPC-GHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETT-SEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccC-CCeeCHHHHHHHHHhCCcCCccC
Confidence 5999999994 5677886 99999999999999989999997
No 16
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1.1e-07 Score=97.04 Aligned_cols=53 Identities=28% Similarity=0.739 Sum_probs=43.5
Q ss_pred CcccccccccccccceeccCCCCccchhHHHHHhhcC---CCCCCCcCCCccccCCCc
Q 035975 136 SELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEK---ARCPKCFSSKCRLEDLLP 190 (685)
Q Consensus 136 eeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~~---~sCPvCR~~~~~~~~L~p 190 (685)
..+.|.||+++-++||+|.| ||.||..||.+|+... ..||+|+.. ...+.+.|
T Consensus 46 ~~FdCNICLd~akdPVvTlC-GHLFCWpClyqWl~~~~~~~~cPVCK~~-Vs~~~vvP 101 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVTLC-GHLFCWPCLYQWLQTRPNSKECPVCKAE-VSIDTVVP 101 (230)
T ss_pred CceeeeeeccccCCCEEeec-ccceehHHHHHHHhhcCCCeeCCccccc-cccceEEe
Confidence 37899999999999999998 9999999999999865 469999963 33344433
No 17
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.40 E-value=1.8e-07 Score=96.39 Aligned_cols=48 Identities=27% Similarity=0.705 Sum_probs=40.2
Q ss_pred CCCcccccccccccccc--------eeccCCCCccchhHHHHHhhcCCCCCCCcCCC
Q 035975 134 FPSELKCSLCNTLFKEA--------VMIPCCQHSFCEKCIRLVLVEKARCPKCFSSK 182 (685)
Q Consensus 134 LeeeLtCPIClelf~dP--------VtLpCCGHSFC~~CI~~~lk~~~sCPvCR~~~ 182 (685)
...+..|+||++.+.++ +.++| +|.||..||.+|+....+||+||..+
T Consensus 171 ~~~~~eC~ICle~~~~~~~~~~~~~vl~~C-~H~FC~~CI~~Wl~~~~tCPlCR~~~ 226 (238)
T PHA02929 171 RSKDKECAICMEKVYDKEIKNMYFGILSNC-NHVFCIECIDIWKKEKNTCPVCRTPF 226 (238)
T ss_pred CCCCCCCccCCcccccCccccccceecCCC-CCcccHHHHHHHHhcCCCCCCCCCEe
Confidence 34578999999987764 45566 99999999999999888999999753
No 18
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=3.8e-07 Score=95.59 Aligned_cols=46 Identities=39% Similarity=0.707 Sum_probs=42.5
Q ss_pred CCcccccccccccccceeccCCCCccchhHHHHHhhcCCCCCCCcCC
Q 035975 135 PSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKARCPKCFSS 181 (685)
Q Consensus 135 eeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~~~sCPvCR~~ 181 (685)
+....|.||++...+|..||| ||.||..||..|......||+||..
T Consensus 237 ~a~~kC~LCLe~~~~pSaTpC-GHiFCWsCI~~w~~ek~eCPlCR~~ 282 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSATPC-GHIFCWSCILEWCSEKAECPLCREK 282 (293)
T ss_pred CCCCceEEEecCCCCCCcCcC-cchHHHHHHHHHHccccCCCccccc
Confidence 345899999999999999998 9999999999999988899999974
No 19
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.25 E-value=7.8e-07 Score=65.54 Aligned_cols=42 Identities=38% Similarity=0.908 Sum_probs=36.6
Q ss_pred cccccccccccceeccCCCCccchhHHHHHhhc-CCCCCCCcC
Q 035975 139 KCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVE-KARCPKCFS 180 (685)
Q Consensus 139 tCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~-~~sCPvCR~ 180 (685)
.|+||++.+.+++.++-|||.||..|+..|+.. ...||.|+.
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~ 43 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRT 43 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCC
Confidence 599999999888887733999999999999987 568999985
No 20
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.23 E-value=5.2e-07 Score=70.49 Aligned_cols=35 Identities=31% Similarity=1.103 Sum_probs=22.6
Q ss_pred cccccccccc----ceeccCCCCccchhHHHHHhhcC----CCCC
Q 035975 140 CSLCNTLFKE----AVMIPCCQHSFCEKCIRLVLVEK----ARCP 176 (685)
Q Consensus 140 CPIClelf~d----PVtLpCCGHSFC~~CI~~~lk~~----~sCP 176 (685)
||||.+ |.+ |+.|+| ||+||..||.+++... ++||
T Consensus 1 CpIc~e-~~~~~n~P~~L~C-GH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPC-GHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SS-S-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeC-ccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 888 999997 9999999999998743 4677
No 21
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.15 E-value=1.6e-06 Score=61.74 Aligned_cols=38 Identities=42% Similarity=1.110 Sum_probs=34.4
Q ss_pred ccccccccccceeccCCCCccchhHHHHHhh-cCCCCCCC
Q 035975 140 CSLCNTLFKEAVMIPCCQHSFCEKCIRLVLV-EKARCPKC 178 (685)
Q Consensus 140 CPIClelf~dPVtLpCCGHSFC~~CI~~~lk-~~~sCPvC 178 (685)
|+||++....++.++| ||.||..|+..|+. ....||.|
T Consensus 1 C~iC~~~~~~~~~~~C-~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPC-GHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecC-CChHHHHHHHHHHHhCcCCCCCC
Confidence 8999999999999998 99999999999988 44679987
No 22
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=98.13 E-value=9.9e-07 Score=93.92 Aligned_cols=71 Identities=25% Similarity=0.577 Sum_probs=60.4
Q ss_pred CCCCCcccccccccccccceeccCCCCccchhHHHHHhhcCCCCCCCcCCCc---cccCCCccHHHHHHHHHHH
Q 035975 132 GNFPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKARCPKCFSSKC---RLEDLLPNVSLRQAIEHFL 202 (685)
Q Consensus 132 e~LeeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~~~sCPvCR~~~~---~~~~L~pN~~L~nLVe~~r 202 (685)
.++...++|.+|..+|.|++++.=|.||||+.||..++.....||.|...+- ...+++.+.+|+.||-.|.
T Consensus 10 ~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKLV 83 (331)
T KOG2660|consen 10 TELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKLV 83 (331)
T ss_pred hhcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCccccccCCcchHHHHHHHHHc
Confidence 4577789999999999999988766999999999999999889999986322 2457888999999987764
No 23
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=4.5e-07 Score=97.16 Aligned_cols=72 Identities=24% Similarity=0.514 Sum_probs=61.2
Q ss_pred CCCCCcccccccccccccceeccCCCCccchhHHHHHhhcC-CCCCCCcCCCccccCCCccHHHHHHHHHHHh
Q 035975 132 GNFPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEK-ARCPKCFSSKCRLEDLLPNVSLRQAIEHFLE 203 (685)
Q Consensus 132 e~LeeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~~-~sCPvCR~~~~~~~~L~pN~~L~nLVe~~re 203 (685)
..|.-+|.|+||+++++..++++=|+|.||..||...+... ..||.||+.......|+++...-.||..+..
T Consensus 38 ~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~~ 110 (381)
T KOG0311|consen 38 AMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKIYP 110 (381)
T ss_pred HHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHHhc
Confidence 34667899999999999999998779999999999888765 5899999988888889888777777766644
No 24
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.09 E-value=1.8e-06 Score=66.71 Aligned_cols=41 Identities=29% Similarity=0.909 Sum_probs=34.9
Q ss_pred ccccccccc---ccceeccCCCCccchhHHHHHhhcCCCCCCCcC
Q 035975 139 KCSLCNTLF---KEAVMIPCCQHSFCEKCIRLVLVEKARCPKCFS 180 (685)
Q Consensus 139 tCPIClelf---~dPVtLpCCGHSFC~~CI~~~lk~~~sCPvCR~ 180 (685)
.|+||.+.+ ..|++|+| ||+||..||.........||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~C-gH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSC-GHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEccc-CCHHHHHHHHhhcCCCCCCcCCCC
Confidence 489999999 35788888 999999999998855578999984
No 25
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=2e-06 Score=95.81 Aligned_cols=52 Identities=35% Similarity=0.725 Sum_probs=43.3
Q ss_pred cccccccccccccceeccCCCCccchhHHHHHhhcC-----CCCCCCcCCCccccCCCc
Q 035975 137 ELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEK-----ARCPKCFSSKCRLEDLLP 190 (685)
Q Consensus 137 eLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~~-----~sCPvCR~~~~~~~~L~p 190 (685)
+..||||++...-|+.|.| ||.||..||.++|... ..||.|+.. ....+|.+
T Consensus 186 ~~~CPICL~~~~~p~~t~C-GHiFC~~CiLqy~~~s~~~~~~~CPiC~s~-I~~kdl~p 242 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNC-GHIFCGPCILQYWNYSAIKGPCSCPICRST-ITLKDLLP 242 (513)
T ss_pred CCcCCcccCCCCccccccc-CceeeHHHHHHHHhhhcccCCccCCchhhh-ccccceee
Confidence 7899999999999999997 9999999999999765 379999964 44444433
No 26
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=98.08 E-value=1.4e-06 Score=95.38 Aligned_cols=102 Identities=25% Similarity=0.566 Sum_probs=76.6
Q ss_pred CCCcccccccccccccceeccCCCCccchhHHHHHhh-------------------------------------------
Q 035975 134 FPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLV------------------------------------------- 170 (685)
Q Consensus 134 LeeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk------------------------------------------- 170 (685)
++++|.||||..+|.+|++|+| +|+.|+.|....+.
T Consensus 1 meeelkc~vc~~f~~epiil~c-~h~lc~~ca~~~~~~tp~~~spq~~~aa~s~vs~~~~~~~d~msl~~~ad~g~~~~~ 79 (699)
T KOG4367|consen 1 MEEELKCPVCGSFYREPIILPC-SHNLCQACARNILVQTPESESPQSHRAAGSGVSDYDYLDLDKMSLYSEADSGYGSYG 79 (699)
T ss_pred CcccccCceehhhccCceEeec-ccHHHHHHHHhhcccCCCCCCchhhhhcCCCCCccccccccceeeEeeccCCCCccC
Confidence 3679999999999999999998 99999999865442
Q ss_pred --------------------------------------cC---CCCCCCcCCCcc----ccCCCccHHHHHHHHHHHhhc
Q 035975 171 --------------------------------------EK---ARCPKCFSSKCR----LEDLLPNVSLRQAIEHFLESQ 205 (685)
Q Consensus 171 --------------------------------------~~---~sCPvCR~~~~~----~~~L~pN~~L~nLVe~~redq 205 (685)
.. ..||.|.+.++. ...++.|..|.+.|++|....
T Consensus 80 ~~a~~~~t~~~~~~~g~~~~p~am~pp~t~l~~~lap~~~~~~i~c~~c~rs~~~dd~~l~~~p~n~~le~vi~ryq~s~ 159 (699)
T KOG4367|consen 80 GFASAPTTPCQKSPNGVRVFPPAMPPPATHLSPALAPVPRNSCITCPQCHRSLILDDRGLRGFPKNRVLEGVIDRYQQSK 159 (699)
T ss_pred CeeecCCCccccCCCCceeCCCCCCCchhhccccccCCCCCceEEcchhhhheEecccccccCchhhHHHHHHHHHhhhh
Confidence 00 168999875442 567899999999999997754
Q ss_pred cc--ccCccCCCCCC--CCchhhHHHHHhhhhhhhcccc
Q 035975 206 IL--ISGSENAYHRY--APDGESGIQAKDVSCAVTNLQR 240 (685)
Q Consensus 206 ~~--iCs~Eh~~H~~--~paee~C~eCk~l~CaL~~Lqe 240 (685)
.. .| ..|.. ..+..+|++|..++|+-+++.=
T Consensus 160 ~aa~kc----qlce~a~k~a~v~ceqcdv~yc~pc~~~~ 194 (699)
T KOG4367|consen 160 AAALKC----QLCEKAPKEATVMCEQCDVFYCDPCRLRC 194 (699)
T ss_pred HHhhhh----hhhcCChhhhhhhHhhCceEEechHHhcc
Confidence 32 23 22222 3467789999999998766543
No 27
>PHA02926 zinc finger-like protein; Provisional
Probab=97.95 E-value=4.6e-06 Score=85.26 Aligned_cols=48 Identities=25% Similarity=0.715 Sum_probs=36.8
Q ss_pred CCCcccccccccccccc--------eeccCCCCccchhHHHHHhhcC------CCCCCCcCC
Q 035975 134 FPSELKCSLCNTLFKEA--------VMIPCCQHSFCEKCIRLVLVEK------ARCPKCFSS 181 (685)
Q Consensus 134 LeeeLtCPIClelf~dP--------VtLpCCGHSFC~~CI~~~lk~~------~sCPvCR~~ 181 (685)
...+..|+||++...++ -.|+.|+|+||..||..|.... ..||.||..
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~ 228 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTR 228 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcce
Confidence 45589999999987543 1344459999999999998753 359999974
No 28
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=1.3e-05 Score=83.58 Aligned_cols=46 Identities=30% Similarity=0.649 Sum_probs=39.8
Q ss_pred CcccccccccccccceeccCCCCccchhHHHH-HhhcCC-CCCCCcCCC
Q 035975 136 SELKCSLCNTLFKEAVMIPCCQHSFCEKCIRL-VLVEKA-RCPKCFSSK 182 (685)
Q Consensus 136 eeLtCPIClelf~dPVtLpCCGHSFC~~CI~~-~lk~~~-sCPvCR~~~ 182 (685)
.++.|+||++....|..++| ||.||..||.. |-.... .||+||+..
T Consensus 214 ~d~kC~lC~e~~~~ps~t~C-gHlFC~~Cl~~~~t~~k~~~CplCRak~ 261 (271)
T COG5574 214 ADYKCFLCLEEPEVPSCTPC-GHLFCLSCLLISWTKKKYEFCPLCRAKV 261 (271)
T ss_pred cccceeeeecccCCcccccc-cchhhHHHHHHHHHhhccccCchhhhhc
Confidence 47899999999999999998 99999999998 555454 599999843
No 29
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=2e-05 Score=86.75 Aligned_cols=71 Identities=34% Similarity=0.679 Sum_probs=55.0
Q ss_pred CCCCCcccccccccccccceeccCCCCccchhHHHHHhhcCCCCCCCcCCCccccC----CCccHHHHHHHHHHHh
Q 035975 132 GNFPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKARCPKCFSSKCRLED----LLPNVSLRQAIEHFLE 203 (685)
Q Consensus 132 e~LeeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~~~sCPvCR~~~~~~~~----L~pN~~L~nLVe~~re 203 (685)
..+..+|.|.||..+|..||+++| ||+||..||.+.+.....||.||..+..... +.+|..+..++..|+.
T Consensus 79 ~~~~sef~c~vc~~~l~~pv~tpc-ghs~c~~Cl~r~ld~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~ 153 (398)
T KOG4159|consen 79 EEIRSEFECCVCSRALYPPVVTPC-GHSFCLECLDRSLDQETECPLCRDELVELPALEQALSLNRLLCKLITKFLE 153 (398)
T ss_pred ccccchhhhhhhHhhcCCCccccc-cccccHHHHHHHhccCCCCcccccccccchHHHHHHHHHHHHHHHHHHhhh
Confidence 456789999999999999999998 9999999999988877899999975432111 1135555566666655
No 30
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=1.3e-05 Score=92.90 Aligned_cols=54 Identities=39% Similarity=0.922 Sum_probs=45.5
Q ss_pred CCCCcccccccccccccceeccCCCCccchhHHHHHhhcC-CCCCCCcCCCccccCC
Q 035975 133 NFPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEK-ARCPKCFSSKCRLEDL 188 (685)
Q Consensus 133 ~LeeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~~-~sCPvCR~~~~~~~~L 188 (685)
.+..-|+||+|..-+++.|++.| ||.||..||...+... .+||.|... +.+.++
T Consensus 639 ~yK~~LkCs~Cn~R~Kd~vI~kC-~H~FC~~Cvq~r~etRqRKCP~Cn~a-FganDv 693 (698)
T KOG0978|consen 639 EYKELLKCSVCNTRWKDAVITKC-GHVFCEECVQTRYETRQRKCPKCNAA-FGANDV 693 (698)
T ss_pred HHHhceeCCCccCchhhHHHHhc-chHHHHHHHHHHHHHhcCCCCCCCCC-CCcccc
Confidence 45678999999999999999998 9999999999988765 589999974 444444
No 31
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.55 E-value=5.7e-05 Score=64.68 Aligned_cols=44 Identities=27% Similarity=0.743 Sum_probs=34.3
Q ss_pred CCCcccccccccccccc------------ee-ccCCCCccchhHHHHHhhcCCCCCCCc
Q 035975 134 FPSELKCSLCNTLFKEA------------VM-IPCCQHSFCEKCIRLVLVEKARCPKCF 179 (685)
Q Consensus 134 LeeeLtCPIClelf~dP------------Vt-LpCCGHSFC~~CI~~~lk~~~sCPvCR 179 (685)
+.++. |+||++.|.++ +. .+| ||.|-..||.+|+.....||+||
T Consensus 17 ~~~d~-C~IC~~~l~~~~~~~~~~~~~~~i~~~~C-~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 17 IADDN-CAICREPLEDPCPECQAPQDECPIVWGPC-GHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp SCCSB-ETTTTSBTTSTTCCHHHCTTTS-EEEETT-SEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CcCCc-ccccChhhhChhhhhcCCccccceEeccc-CCCEEHHHHHHHHhcCCcCCCCC
Confidence 33443 99999999433 33 356 99999999999999889999997
No 32
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.53 E-value=0.00012 Score=78.31 Aligned_cols=61 Identities=26% Similarity=0.800 Sum_probs=40.8
Q ss_pred cccccccccc-cccce---ec-cCCCCccchhHHHHHhhcC-CCCCCCcCCCccccC----CCccHHHHHHHH
Q 035975 137 ELKCSLCNTL-FKEAV---MI-PCCQHSFCEKCIRLVLVEK-ARCPKCFSSKCRLED----LLPNVSLRQAIE 199 (685)
Q Consensus 137 eLtCPIClel-f~dPV---tL-pCCGHSFC~~CI~~~lk~~-~sCPvCR~~~~~~~~----L~pN~~L~nLVe 199 (685)
+..||||+.. +..|- .+ +| ||.||..||...|... ..||.|+. .+...+ +..+..+..-|+
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~C-GH~~C~sCv~~l~~~~~~~CP~C~~-~lrk~~fr~q~F~D~~vekEV~ 73 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVC-GHTLCESCVDLLFVRGSGSCPECDT-PLRKNNFRVQLFEDPTVEKEVD 73 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCC-CCcccHHHHHHHhcCCCCCCCCCCC-ccchhhccccccccHHHHHHHH
Confidence 4689999983 33443 22 56 9999999999988654 57999997 444444 334444444443
No 33
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.37 E-value=0.00012 Score=80.51 Aligned_cols=66 Identities=26% Similarity=0.654 Sum_probs=52.8
Q ss_pred CCCCCcccccccccccccceec-cCCCCccchhHHHHHhhcCCCCCCCcCCCccccCCCccHHHHHHH
Q 035975 132 GNFPSELKCSLCNTLFKEAVMI-PCCQHSFCEKCIRLVLVEKARCPKCFSSKCRLEDLLPNVSLRQAI 198 (685)
Q Consensus 132 e~LeeeLtCPIClelf~dPVtL-pCCGHSFC~~CI~~~lk~~~sCPvCR~~~~~~~~L~pN~~L~nLV 198 (685)
..+++.+.|++|..++.+|+.+ .| ||.||..|+..|+.....||.|+........+.....+...+
T Consensus 16 ~~~~~~l~C~~C~~vl~~p~~~~~c-gh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~~~~~~~~~~~ 82 (391)
T KOG0297|consen 16 RPLDENLLCPICMSVLRDPVQTTTC-GHRFCAGCLLESLSNHQKCPVCRQELTQAEELPVPRALRREL 82 (391)
T ss_pred CCCcccccCccccccccCCCCCCCC-CCcccccccchhhccCcCCcccccccchhhccCchHHHHHHH
Confidence 3478899999999999999995 87 999999999999998889999987665555555333344443
No 34
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.00021 Score=75.14 Aligned_cols=49 Identities=24% Similarity=0.526 Sum_probs=42.0
Q ss_pred CCCCcccccccccccccceeccCCCCccchhHHHHHhh--cCCCCCCCcCC
Q 035975 133 NFPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLV--EKARCPKCFSS 181 (685)
Q Consensus 133 ~LeeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk--~~~sCPvCR~~ 181 (685)
......+||+|.+..+.|.+..||||.||..||..... ..+.||.|...
T Consensus 235 ~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~ 285 (298)
T KOG2879|consen 235 TGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGEN 285 (298)
T ss_pred cccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCC
Confidence 34568899999999999999998899999999987665 34899999864
No 35
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=97.25 E-value=0.00015 Score=47.20 Aligned_cols=18 Identities=56% Similarity=1.508 Sum_probs=16.8
Q ss_pred ccccccCCCCcccccCCC
Q 035975 363 RTCYMCGSPNHLIRDCPA 380 (685)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~ 380 (685)
|+||.||.++|++++||.
T Consensus 1 ~~C~~C~~~GH~~~~Cp~ 18 (18)
T PF00098_consen 1 RKCFNCGEPGHIARDCPK 18 (18)
T ss_dssp SBCTTTSCSSSCGCTSSS
T ss_pred CcCcCCCCcCcccccCcc
Confidence 689999999999999994
No 36
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.19 E-value=0.00018 Score=59.45 Aligned_cols=43 Identities=28% Similarity=0.544 Sum_probs=29.7
Q ss_pred CCcccccccccccccceeccCCCCccchhHHHHHhhc--CCCCCC
Q 035975 135 PSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVE--KARCPK 177 (685)
Q Consensus 135 eeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~--~~sCPv 177 (685)
...+.|||.+..|.+||...-|||+|.+..|.+++.. ...||+
T Consensus 9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 3468999999999999986444999999999999943 347998
No 37
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.17 E-value=0.00018 Score=72.71 Aligned_cols=59 Identities=20% Similarity=0.522 Sum_probs=46.6
Q ss_pred cccccccccccccceeccCCCCccchhHHHHHhhcCCCCCCCcCCCccccCCCccHHHHHHH
Q 035975 137 ELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKARCPKCFSSKCRLEDLLPNVSLRQAI 198 (685)
Q Consensus 137 eLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~~~sCPvCR~~~~~~~~L~pN~~L~nLV 198 (685)
.|.|.||.+.|..||.+.| ||+||..|...-+.....|-+|.+.. ...+.+.-.+..|+
T Consensus 196 PF~C~iCKkdy~spvvt~C-GH~FC~~Cai~~y~kg~~C~~Cgk~t--~G~f~V~~d~~kmL 254 (259)
T COG5152 196 PFLCGICKKDYESPVVTEC-GHSFCSLCAIRKYQKGDECGVCGKAT--YGRFWVVSDLQKML 254 (259)
T ss_pred ceeehhchhhccchhhhhc-chhHHHHHHHHHhccCCcceecchhh--ccceeHHhhHHHHH
Confidence 5899999999999999998 99999999998888888999998642 23333433444444
No 38
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.00017 Score=82.00 Aligned_cols=45 Identities=27% Similarity=0.696 Sum_probs=41.8
Q ss_pred CCccccccccccccc-----ceeccCCCCccchhHHHHHhhcCCCCCCCcC
Q 035975 135 PSELKCSLCNTLFKE-----AVMIPCCQHSFCEKCIRLVLVEKARCPKCFS 180 (685)
Q Consensus 135 eeeLtCPIClelf~d-----PVtLpCCGHSFC~~CI~~~lk~~~sCPvCR~ 180 (685)
..+..|+||.+.+.. |..++| +|.||..|+..|++...+||.||.
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C-~Hifh~~CL~~W~er~qtCP~CR~ 338 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPC-GHIFHDSCLRSWFERQQTCPTCRT 338 (543)
T ss_pred hcCCeeeeechhhccccccccceeec-ccchHHHHHHHHHHHhCcCCcchh
Confidence 347899999999998 899998 999999999999999999999995
No 39
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.00053 Score=72.76 Aligned_cols=59 Identities=24% Similarity=0.519 Sum_probs=46.2
Q ss_pred cccccccccccccceeccCCCCccchhHHHHHhhcCCCCCCCcCCCccccCCCccHHHHHHH
Q 035975 137 ELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKARCPKCFSSKCRLEDLLPNVSLRQAI 198 (685)
Q Consensus 137 eLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~~~sCPvCR~~~~~~~~L~pN~~L~nLV 198 (685)
.+.|-||.+.|.+||.+.| +|+||..|....+.....|++|.+.. ...+.+...|..++
T Consensus 241 Pf~c~icr~~f~~pVvt~c-~h~fc~~ca~~~~qk~~~c~vC~~~t--~g~~~~akeL~~~L 299 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKC-GHYFCEVCALKPYQKGEKCYVCSQQT--HGSFNVAKELLVSL 299 (313)
T ss_pred CccccccccccccchhhcC-CceeehhhhccccccCCcceeccccc--ccccchHHHHHHHH
Confidence 4679999999999999998 99999999998888788999998632 33344444444333
No 40
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.00058 Score=72.66 Aligned_cols=45 Identities=24% Similarity=0.520 Sum_probs=39.4
Q ss_pred cccccccccccccceeccCCCCccchhHHHHHhhcCC-CCCCCcCCC
Q 035975 137 ELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKA-RCPKCFSSK 182 (685)
Q Consensus 137 eLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~~~-sCPvCR~~~ 182 (685)
.-.|+||+....-|+.++| +|.||.-||.......+ .|++||..+
T Consensus 7 ~~eC~IC~nt~n~Pv~l~C-~HkFCyiCiKGsy~ndk~~CavCR~pi 52 (324)
T KOG0824|consen 7 KKECLICYNTGNCPVNLYC-FHKFCYICIKGSYKNDKKTCAVCRFPI 52 (324)
T ss_pred CCcceeeeccCCcCccccc-cchhhhhhhcchhhcCCCCCceecCCC
Confidence 3469999999999999998 99999999998877665 599999754
No 41
>PF13696 zf-CCHC_2: Zinc knuckle
Probab=96.79 E-value=0.00059 Score=50.74 Aligned_cols=22 Identities=36% Similarity=0.866 Sum_probs=19.7
Q ss_pred CccccccCCCCcccccCCCCCC
Q 035975 362 DRTCYMCGSPNHLIRDCPAALS 383 (685)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~ 383 (685)
+.+|++||.+.|+|+|||...|
T Consensus 8 ~Y~C~~C~~~GH~i~dCP~~~P 29 (32)
T PF13696_consen 8 GYVCHRCGQKGHWIQDCPTNKP 29 (32)
T ss_pred CCEeecCCCCCccHhHCCCCCC
Confidence 7899999999999999999544
No 42
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=0.0045 Score=67.73 Aligned_cols=46 Identities=24% Similarity=0.630 Sum_probs=39.9
Q ss_pred CCccccccccccc-cc------------ceeccCCCCccchhHHHHHhhcCCCCCCCcCC
Q 035975 135 PSELKCSLCNTLF-KE------------AVMIPCCQHSFCEKCIRLVLVEKARCPKCFSS 181 (685)
Q Consensus 135 eeeLtCPIClelf-~d------------PVtLpCCGHSFC~~CI~~~lk~~~sCPvCR~~ 181 (685)
..+-+|.||.+-+ .. |..+|| ||.|=..|+..|++.+.+||.||.+
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpC-GHilHl~CLknW~ERqQTCPICr~p 343 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPC-GHILHLHCLKNWLERQQTCPICRRP 343 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccc-cceeeHHHHHHHHHhccCCCcccCc
Confidence 4578999999974 32 478998 9999999999999999999999974
No 43
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.0061 Score=66.46 Aligned_cols=44 Identities=27% Similarity=0.694 Sum_probs=37.3
Q ss_pred cccccccccccc---ceeccCCCCccchhHHHHHhhcCC-CCCCCcCCC
Q 035975 138 LKCSLCNTLFKE---AVMIPCCQHSFCEKCIRLVLVEKA-RCPKCFSSK 182 (685)
Q Consensus 138 LtCPIClelf~d---PVtLpCCGHSFC~~CI~~~lk~~~-sCPvCR~~~ 182 (685)
.+|.||++.|.+ =+.||| .|.|=..||..|+.... .||+|+...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC-~H~FH~~CIDpWL~~~r~~CPvCK~di 277 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPC-SHKFHVNCIDPWLTQTRTFCPVCKRDI 277 (348)
T ss_pred ceEEEeecccccCCeeeEecC-CCchhhccchhhHhhcCccCCCCCCcC
Confidence 599999999974 356898 99999999999998774 599999743
No 44
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=0.0069 Score=66.04 Aligned_cols=45 Identities=36% Similarity=0.771 Sum_probs=37.0
Q ss_pred CCcccccccccccccce-----e---ccCCCCccchhHHHHHhh--c-----CCCCCCCcC
Q 035975 135 PSELKCSLCNTLFKEAV-----M---IPCCQHSFCEKCIRLVLV--E-----KARCPKCFS 180 (685)
Q Consensus 135 eeeLtCPIClelf~dPV-----t---LpCCGHSFC~~CI~~~lk--~-----~~sCPvCR~ 180 (685)
..+..|-||++...+.. . .+| -|+||..||..|-. . ...||.||.
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC-~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv 218 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNC-NHSFCLNCIRKWRQATQFESKTSKSCPFCRV 218 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCc-chhhhhcHhHhhhhhhccccccccCCCcccC
Confidence 44889999999998877 3 456 99999999999973 2 357999996
No 45
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.34 E-value=0.0068 Score=68.68 Aligned_cols=48 Identities=27% Similarity=0.746 Sum_probs=41.2
Q ss_pred CCCCCcccccccccccccceeccCCCCccchhHHHHHhhc-----CCCCCCCcC
Q 035975 132 GNFPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVE-----KARCPKCFS 180 (685)
Q Consensus 132 e~LeeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~-----~~sCPvCR~ 180 (685)
.+-..+..|.+|.+.-.+++.+.| -|+||+.||.++... ..+||+|..
T Consensus 531 ~enk~~~~C~lc~d~aed~i~s~C-hH~FCrlCi~eyv~~f~~~~nvtCP~C~i 583 (791)
T KOG1002|consen 531 DENKGEVECGLCHDPAEDYIESSC-HHKFCRLCIKEYVESFMENNNVTCPVCHI 583 (791)
T ss_pred ccccCceeecccCChhhhhHhhhh-hHHHHHHHHHHHHHhhhcccCCCCccccc
Confidence 344568899999999999999998 999999999988763 258999986
No 46
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=0.015 Score=63.33 Aligned_cols=46 Identities=30% Similarity=0.624 Sum_probs=41.8
Q ss_pred CCcccccccccccccceeccCCCCccchhHHHHHhhcCCCCCCCcCC
Q 035975 135 PSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKARCPKCFSS 181 (685)
Q Consensus 135 eeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~~~sCPvCR~~ 181 (685)
.++-.||||.---..+|..|| +|.-|+.||.+++-+.+.|-.|++.
T Consensus 420 sEd~lCpICyA~pi~Avf~PC-~H~SC~~CI~qHlmN~k~CFfCktT 465 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPC-SHRSCYGCITQHLMNCKRCFFCKTT 465 (489)
T ss_pred cccccCcceecccchhhccCC-CCchHHHHHHHHHhcCCeeeEecce
Confidence 457889999999999999998 9999999999999999999999863
No 47
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.67 E-value=0.017 Score=64.52 Aligned_cols=108 Identities=17% Similarity=0.278 Sum_probs=62.6
Q ss_pred ccccCccCCCCCCCccccccccchHHHHhc-----ccccchhhhhhhhccCCCChhhhHhHHHHHhhcccccccCCCCCc
Q 035975 63 ENIDTTRTSEPHNTGCQKLEASNVNEAIRR-----GAVHSRIEEDLLQTESKSDVPQFMKLELVIKTNASAMENGNFPSE 137 (685)
Q Consensus 63 k~~RvkRSSgip~S~lqkVessdleeAl~~-----givV~kvd~~a~~tksqPd~qe~kk~E~~~ss~asa~~~e~Leee 137 (685)
.-+|+-| .+.|+.+-..|.-.+.++|... |-....++...-...-... .+....+ ..++.....+.+.
T Consensus 103 ~~irivR-d~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~le~e~Chll~V~~-ve~~~s~-----d~as~~~~~~tEL 175 (493)
T KOG0804|consen 103 SDIRIVR-DGMPNRYMVLIKFRDQADADTFYEEFNGKQFNSLEPEVCHLLYVDR-VEVTESE-----DGASEPPTGLTEL 175 (493)
T ss_pred heeEEee-cCCCceEEEEEEeccchhHHHHHHHcCCCcCCCCCccceeEEEEEE-EEEEecc-----cCCCCCCCCcccC
Confidence 3455666 7888877777776666666542 2222222221100000000 0001011 1111233456677
Q ss_pred ccccccccccccce----eccCCCCccchhHHHHHhhcCCCCCCCcC
Q 035975 138 LKCSLCNTLFKEAV----MIPCCQHSFCEKCIRLVLVEKARCPKCFS 180 (685)
Q Consensus 138 LtCPIClelf~dPV----tLpCCGHSFC~~CI~~~lk~~~sCPvCR~ 180 (685)
-+||||++-+-.-+ ++.| .|+|=..|+..|+ ..+||+||.
T Consensus 176 PTCpVCLERMD~s~~gi~t~~c-~Hsfh~~cl~~w~--~~scpvcR~ 219 (493)
T KOG0804|consen 176 PTCPVCLERMDSSTTGILTILC-NHSFHCSCLMKWW--DSSCPVCRY 219 (493)
T ss_pred CCcchhHhhcCccccceeeeec-ccccchHHHhhcc--cCcChhhhh
Confidence 89999999997665 5677 9999999999997 468999995
No 48
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.58 E-value=0.023 Score=61.04 Aligned_cols=44 Identities=27% Similarity=0.807 Sum_probs=37.2
Q ss_pred ccccccccccccc---ceeccCCCCccchhHHHHHhhc-CCCCCCCcCC
Q 035975 137 ELKCSLCNTLFKE---AVMIPCCQHSFCEKCIRLVLVE-KARCPKCFSS 181 (685)
Q Consensus 137 eLtCPIClelf~d---PVtLpCCGHSFC~~CI~~~lk~-~~sCPvCR~~ 181 (685)
...|.||+.-|.. -+.||| .|.|=..|+..|+.. ...||+||..
T Consensus 323 GveCaICms~fiK~d~~~vlPC-~H~FH~~Cv~kW~~~y~~~CPvCrt~ 370 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPC-DHRFHVGCVDKWLLGYSNKCPVCRTA 370 (374)
T ss_pred CceEEEEhhhhcccceEEEecc-CceechhHHHHHHhhhcccCCccCCC
Confidence 5889999998863 367888 999999999999984 5689999974
No 49
>COG5180 PBP1 Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=94.50 E-value=0.064 Score=60.40 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=11.9
Q ss_pred CCCCcc-CCCCCCCCCCCCCCcCCCcc
Q 035975 418 NHGMMP-FNATMAPTTQFAVPAYMPSM 443 (685)
Q Consensus 418 ~~gmmp-f~~~~~p~~~~~~p~ymp~~ 443 (685)
.|.||| ++--..|+-|+-+|+++|+.
T Consensus 563 SP~~~P~~Gs~Ga~~~G~~~~~~vP~~ 589 (654)
T COG5180 563 SPQMMPVMGSNGAEEGGGNISPHVPAG 589 (654)
T ss_pred CCCCCcccCCCCCcccCCcCCCCCCcc
Confidence 455666 33333444444444444443
No 50
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=94.17 E-value=0.032 Score=65.79 Aligned_cols=46 Identities=22% Similarity=0.368 Sum_probs=38.1
Q ss_pred ccccccccccccccee---ccCCCCccchhHHHHHhhcCCCCCCCcCCCc
Q 035975 137 ELKCSLCNTLFKEAVM---IPCCQHSFCEKCIRLVLVEKARCPKCFSSKC 183 (685)
Q Consensus 137 eLtCPIClelf~dPVt---LpCCGHSFC~~CI~~~lk~~~sCPvCR~~~~ 183 (685)
.-.||+|+.-+.+-.. .+| +|.||..||..|.+...+||+||..+.
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c-~H~FC~~Ci~sWsR~aqTCPiDR~EF~ 171 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHT-AHYFCEECVGSWSRCAQTCPVDRGEFG 171 (1134)
T ss_pred hhhhhHHHHHHHHHhhcccccc-ccccHHHHhhhhhhhcccCchhhhhhh
Confidence 5679999988876543 356 999999999999998899999998544
No 51
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.95 E-value=0.032 Score=60.83 Aligned_cols=46 Identities=26% Similarity=0.769 Sum_probs=39.2
Q ss_pred CCcccccccccccccceeccCCCCc-cchhHHHHHhhcCCCCCCCcCC
Q 035975 135 PSELKCSLCNTLFKEAVMIPCCQHS-FCEKCIRLVLVEKARCPKCFSS 181 (685)
Q Consensus 135 eeeLtCPIClelf~dPVtLpCCGHS-FC~~CI~~~lk~~~sCPvCR~~ 181 (685)
.....|-||+.-.++-+.||| -|. .|..|.....-....||+||..
T Consensus 288 ~~gkeCVIClse~rdt~vLPC-RHLCLCs~Ca~~Lr~q~n~CPICRqp 334 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPC-RHLCLCSGCAKSLRYQTNNCPICRQP 334 (349)
T ss_pred cCCCeeEEEecCCcceEEecc-hhhehhHhHHHHHHHhhcCCCccccc
Confidence 336789999999999999998 997 7999998766455689999974
No 52
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=93.77 E-value=0.16 Score=60.32 Aligned_cols=18 Identities=33% Similarity=0.333 Sum_probs=8.2
Q ss_pred CCcccCCCCCCCCCCCCc
Q 035975 31 DFGVDLCPALNGNLSCSD 48 (685)
Q Consensus 31 D~~~~~~p~~~~~~~~S~ 48 (685)
|+..-..|++..+.|.|+
T Consensus 50 ~~~sk~~~~H~~~ss~sn 67 (1102)
T KOG1924|consen 50 DFKSKPSPAHLRSSSASN 67 (1102)
T ss_pred ccccCCCcccCCCccccc
Confidence 444444455444444443
No 53
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.60 E-value=0.019 Score=47.86 Aligned_cols=43 Identities=23% Similarity=0.593 Sum_probs=37.2
Q ss_pred ccccccccccccceeccCCCCc-cchhHHHHHhhc-CCCCCCCcCC
Q 035975 138 LKCSLCNTLFKEAVMIPCCQHS-FCEKCIRLVLVE-KARCPKCFSS 181 (685)
Q Consensus 138 LtCPIClelf~dPVtLpCCGHS-FC~~CI~~~lk~-~~sCPvCR~~ 181 (685)
-.|.||.+-..+.|...| ||- .|..|-.+.++. ...||.||.+
T Consensus 8 dECTICye~pvdsVlYtC-GHMCmCy~Cg~rl~~~~~g~CPiCRap 52 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTC-GHMCMCYACGLRLKKALHGCCPICRAP 52 (62)
T ss_pred cceeeeccCcchHHHHHc-chHHhHHHHHHHHHHccCCcCcchhhH
Confidence 569999999999999998 996 799999998885 4589999963
No 54
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.99 E-value=0.079 Score=55.51 Aligned_cols=64 Identities=30% Similarity=0.642 Sum_probs=50.3
Q ss_pred cccccccccccc------cceeccCCCCccchhHHHHHhhcC-CCCCCCcCCC----ccccCCCccHHHHHHHHHH
Q 035975 137 ELKCSLCNTLFK------EAVMIPCCQHSFCEKCIRLVLVEK-ARCPKCFSSK----CRLEDLLPNVSLRQAIEHF 201 (685)
Q Consensus 137 eLtCPIClelf~------dPVtLpCCGHSFC~~CI~~~lk~~-~sCPvCR~~~----~~~~~L~pN~~L~nLVe~~ 201 (685)
.+.|-||.+.|. -|..+.| ||+||..|+...+... ..||.||... .....+..|+.+..++...
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c-~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKC-GHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CCceeecCccccccCcccCCccccc-CceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 467889988774 5888887 9999999999888765 3799999742 1256788888888888776
No 55
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.72 E-value=0.047 Score=63.31 Aligned_cols=57 Identities=32% Similarity=0.681 Sum_probs=40.3
Q ss_pred CCCcccccccccccc----cceeccCCCCccchhHHHHHhhcCCCCCCCcCC----CccccCCCccHHH
Q 035975 134 FPSELKCSLCNTLFK----EAVMIPCCQHSFCEKCIRLVLVEKARCPKCFSS----KCRLEDLLPNVSL 194 (685)
Q Consensus 134 LeeeLtCPIClelf~----dPVtLpCCGHSFC~~CI~~~lk~~~sCPvCR~~----~~~~~~L~pN~~L 194 (685)
+.+.|.|+||+.+|. .||++-| ||+.|..|++.... ..|| |... +...+.+..|+.|
T Consensus 8 w~~~l~c~ic~n~f~~~~~~Pvsl~c-ghtic~~c~~~lyn--~scp-~~~De~~~~~~~~e~p~n~al 72 (861)
T KOG3161|consen 8 WVLLLLCDICLNLFVVQRLEPVSLQC-GHTICGHCVQLLYN--ASCP-TKRDEDSSLMQLKEEPRNYAL 72 (861)
T ss_pred hHHHhhchHHHHHHHHHhcCcccccc-cchHHHHHHHhHhh--ccCC-CCccccchhcChhhcchhHHH
Confidence 556789999988874 7999998 99999999987764 4566 4331 1234455555544
No 56
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=92.49 E-value=0.076 Score=51.24 Aligned_cols=46 Identities=26% Similarity=0.647 Sum_probs=40.5
Q ss_pred Ccccccccccccccceecc---CCCCccchhHHHHHhhcC---CCCCCCcCC
Q 035975 136 SELKCSLCNTLFKEAVMIP---CCQHSFCEKCIRLVLVEK---ARCPKCFSS 181 (685)
Q Consensus 136 eeLtCPIClelf~dPVtLp---CCGHSFC~~CI~~~lk~~---~sCPvCR~~ 181 (685)
....|-||.+...+...|. |||-+.|..|--..|+.. ..||+|+++
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTS 130 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTS 130 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccc
Confidence 4678999999999998884 999999999999999864 589999974
No 57
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=92.48 E-value=0.11 Score=46.65 Aligned_cols=46 Identities=26% Similarity=0.679 Sum_probs=33.0
Q ss_pred Ccccccccccccc-----------c-ceeccCCCCccchhHHHHHhhcC---CCCCCCcCC
Q 035975 136 SELKCSLCNTLFK-----------E-AVMIPCCQHSFCEKCIRLVLVEK---ARCPKCFSS 181 (685)
Q Consensus 136 eeLtCPIClelf~-----------d-PVtLpCCGHSFC~~CI~~~lk~~---~sCPvCR~~ 181 (685)
.+-.|.||...|. + |+.+.-|+|.|=..||.+|+... ..||.||+.
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~ 80 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQP 80 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCe
Confidence 3555666666553 2 44443359999999999999863 589999974
No 58
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=92.21 E-value=0.45 Score=56.77 Aligned_cols=10 Identities=40% Similarity=0.491 Sum_probs=5.2
Q ss_pred CCccCCCCCC
Q 035975 440 MPSMFGGIPA 449 (685)
Q Consensus 440 mp~~~~g~~~ 449 (685)
+|+||.|.|.
T Consensus 587 pp~g~~Gg~p 596 (1102)
T KOG1924|consen 587 PPGGFLGGPP 596 (1102)
T ss_pred CCCCCCCCCC
Confidence 6666644333
No 59
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.98 E-value=0.1 Score=58.13 Aligned_cols=57 Identities=32% Similarity=0.679 Sum_probs=42.8
Q ss_pred cccccccccccccc-----eeccCCCCccchhHHHHHhhcC--CCCCCCcCCCccccCCCccHHHH
Q 035975 137 ELKCSLCNTLFKEA-----VMIPCCQHSFCEKCIRLVLVEK--ARCPKCFSSKCRLEDLLPNVSLR 195 (685)
Q Consensus 137 eLtCPIClelf~dP-----VtLpCCGHSFC~~CI~~~lk~~--~sCPvCR~~~~~~~~L~pN~~L~ 195 (685)
..+||||++-+.-| +++.| ||.|-..||+.|+-.. ..||.|.. ......+++-+.++
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~c-ghlFgs~cie~wl~k~~~~~cp~c~~-katkr~i~~e~alR 67 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQC-GHLFGSQCIEKWLGKKTKMQCPLCSG-KATKRQIRPEYALR 67 (463)
T ss_pred cccCceeeeeeeecCceEEeeecc-cccccHHHHHHHHhhhhhhhCcccCC-hhHHHHHHHHHHHH
Confidence 56899999998876 45677 9999999999999532 47999985 34455566555544
No 60
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=91.77 E-value=0.066 Score=59.35 Aligned_cols=44 Identities=25% Similarity=0.600 Sum_probs=36.7
Q ss_pred ccccccccccccceeccCCCCccchhHHHHHhhc--CCCCCCCcCCC
Q 035975 138 LKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVE--KARCPKCFSSK 182 (685)
Q Consensus 138 LtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~--~~sCPvCR~~~ 182 (685)
-.|.||-+-=++=.+-|| ||..|..|+..|... ...||.||..+
T Consensus 370 eLCKICaendKdvkIEPC-GHLlCt~CLa~WQ~sd~gq~CPFCRcEI 415 (563)
T KOG1785|consen 370 ELCKICAENDKDVKIEPC-GHLLCTSCLAAWQDSDEGQTCPFCRCEI 415 (563)
T ss_pred HHHHHhhccCCCcccccc-cchHHHHHHHhhcccCCCCCCCceeeEe
Confidence 369999998888777787 999999999999754 36899999743
No 61
>PF04641 Rtf2: Rtf2 RING-finger
Probab=91.31 E-value=0.14 Score=53.51 Aligned_cols=53 Identities=21% Similarity=0.472 Sum_probs=39.2
Q ss_pred CCCccccccccccccc---ceec-cCCCCccchhHHHHHhhcCCCCCCCcCCCccccCC
Q 035975 134 FPSELKCSLCNTLFKE---AVMI-PCCQHSFCEKCIRLVLVEKARCPKCFSSKCRLEDL 188 (685)
Q Consensus 134 LeeeLtCPIClelf~d---PVtL-pCCGHSFC~~CI~~~lk~~~sCPvCR~~~~~~~~L 188 (685)
-...+.|||+...|.. -|.+ +| ||.|+..+|.+.- ....||+|...+...+.+
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~c-G~V~s~~alke~k-~~~~Cp~c~~~f~~~DiI 166 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPC-GCVFSEKALKELK-KSKKCPVCGKPFTEEDII 166 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCC-CCEeeHHHHHhhc-ccccccccCCccccCCEE
Confidence 4567999999998853 2333 66 9999999999874 345799999865544333
No 62
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.19 E-value=0.14 Score=53.83 Aligned_cols=45 Identities=11% Similarity=0.305 Sum_probs=38.8
Q ss_pred Ccccccccccccccce----eccCCCCccchhHHHHHhhcCCCCCCCcCC
Q 035975 136 SELKCSLCNTLFKEAV----MIPCCQHSFCEKCIRLVLVEKARCPKCFSS 181 (685)
Q Consensus 136 eeLtCPIClelf~dPV----tLpCCGHSFC~~CI~~~lk~~~sCPvCR~~ 181 (685)
..+.||||.+.|.+.+ .-+| ||.||..|++.++.....||+|...
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~s-g~Vv~~ecvEklir~D~v~pv~d~p 268 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPS-GHVVTKECVEKLIRKDMVDPVTDKP 268 (303)
T ss_pred cceecccchhhhcCccceEEeccC-CcEeeHHHHHHhccccccccCCCCc
Confidence 4689999999998864 3366 9999999999999888999999864
No 63
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.93 E-value=0.071 Score=57.16 Aligned_cols=40 Identities=28% Similarity=0.744 Sum_probs=33.8
Q ss_pred cccccccccccccceeccCCCCc-cchhHHHHHhhcCCCCCCCcCC
Q 035975 137 ELKCSLCNTLFKEAVMIPCCQHS-FCEKCIRLVLVEKARCPKCFSS 181 (685)
Q Consensus 137 eLtCPIClelf~dPVtLpCCGHS-FC~~CI~~~lk~~~sCPvCR~~ 181 (685)
...|.||++...+-+.|+| ||. -|..|-.+. ..||+||+.
T Consensus 300 ~~LC~ICmDaP~DCvfLeC-GHmVtCt~CGkrm----~eCPICRqy 340 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLEC-GHMVTCTKCGKRM----NECPICRQY 340 (350)
T ss_pred HHHHHHHhcCCcceEEeec-CcEEeehhhcccc----ccCchHHHH
Confidence 6789999999999999998 996 488886543 279999973
No 64
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=90.77 E-value=0.1 Score=61.51 Aligned_cols=41 Identities=27% Similarity=0.808 Sum_probs=36.7
Q ss_pred ccccccccccccceeccCCCCccchhHHHHHhhcC--CCCCCCcC
Q 035975 138 LKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEK--ARCPKCFS 180 (685)
Q Consensus 138 LtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~~--~sCPvCR~ 180 (685)
..|.||.+ ...++.+.| +|.||..|+...+... ..||.|+.
T Consensus 455 ~~c~ic~~-~~~~~it~c-~h~~c~~c~~~~i~~~~~~~~~~cr~ 497 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRC-GHDFCVECLKKSIQQSENAPCPLCRN 497 (674)
T ss_pred cccccccc-cccceeecc-cchHHHHHHHhccccccCCCCcHHHH
Confidence 89999999 889999998 9999999999988754 36999996
No 65
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=90.69 E-value=0.13 Score=56.01 Aligned_cols=45 Identities=20% Similarity=0.409 Sum_probs=39.3
Q ss_pred CcccccccccccccceeccCCCCccchhHHHHHhhcCCCCCCCcC
Q 035975 136 SELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKARCPKCFS 180 (685)
Q Consensus 136 eeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~~~sCPvCR~ 180 (685)
+.-.||||+.-..+|..+.--|-.||..||..++.+...||+-..
T Consensus 299 ~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~ 343 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGY 343 (357)
T ss_pred ccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCC
Confidence 456799999999999877655999999999999998889998765
No 66
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.04 E-value=0.17 Score=55.54 Aligned_cols=47 Identities=30% Similarity=0.651 Sum_probs=36.5
Q ss_pred cCCCCCcccccccccccccceeccCCCCccchhHHHHHhhcCCCCCCCcCC
Q 035975 131 NGNFPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKARCPKCFSS 181 (685)
Q Consensus 131 ~e~LeeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~~~sCPvCR~~ 181 (685)
..++.....|-||++-..+.+.++| ||.-| |+.-.. ....||+||..
T Consensus 299 ~~~~~~p~lcVVcl~e~~~~~fvpc-Gh~cc--ct~cs~-~l~~CPvCR~r 345 (355)
T KOG1571|consen 299 FRELPQPDLCVVCLDEPKSAVFVPC-GHVCC--CTLCSK-HLPQCPVCRQR 345 (355)
T ss_pred ccccCCCCceEEecCCccceeeecC-CcEEE--chHHHh-hCCCCchhHHH
Confidence 3456667889999999999999998 99866 765332 23469999963
No 67
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=89.12 E-value=0.33 Score=39.41 Aligned_cols=42 Identities=31% Similarity=0.899 Sum_probs=20.6
Q ss_pred ccccccccc--cceeccC-CCCccchhHHHHHhhc-CCCCCCCcCC
Q 035975 140 CSLCNTLFK--EAVMIPC-CQHSFCEKCIRLVLVE-KARCPKCFSS 181 (685)
Q Consensus 140 CPIClelf~--dPVtLpC-CGHSFC~~CI~~~lk~-~~sCPvCR~~ 181 (685)
||+|.+.+. +--.+|| ||.-+|+.|..+.+.. ...||.||+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~ 46 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREP 46 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCC
Confidence 788888772 2233443 4889999999998864 5789999963
No 68
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.44 E-value=0.32 Score=54.36 Aligned_cols=108 Identities=13% Similarity=0.309 Sum_probs=63.2
Q ss_pred CCCccccccccccccc---ceeccCCCCccchhHHHHHhhcC--------CCCCCCcCCCccccCCCccHHHHHHHH---
Q 035975 134 FPSELKCSLCNTLFKE---AVMIPCCQHSFCEKCIRLVLVEK--------ARCPKCFSSKCRLEDLLPNVSLRQAIE--- 199 (685)
Q Consensus 134 LeeeLtCPIClelf~d---PVtLpCCGHSFC~~CI~~~lk~~--------~sCPvCR~~~~~~~~L~pN~~L~nLVe--- 199 (685)
+...+.|.||++...- =+.+|| +|.||+.|+..++... ..||.|.-. ...+--.|.++|.
T Consensus 181 ~~slf~C~ICf~e~~G~~c~~~lpC-~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~-----~~a~~g~vKelvg~EL 254 (445)
T KOG1814|consen 181 VNSLFDCCICFEEQMGQHCFKFLPC-SHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG-----SVAPPGQVKELVGDEL 254 (445)
T ss_pred HhhcccceeeehhhcCcceeeeccc-chHHHHHHHHHHHHHhhhcceeeeecCCCCCCc-----ccCCchHHHHHHHHHH
Confidence 4557899999998754 356787 9999999999987631 368765431 1122224555543
Q ss_pred --HHHh---h-------cccccCccCCCCCC------CCchhhHHHHHhhhhhhhcccccccccCCCC
Q 035975 200 --HFLE---S-------QILISGSENAYHRY------APDGESGIQAKDVSCAVTNLQREPELADSPS 249 (685)
Q Consensus 200 --~~re---d-------q~~iCs~Eh~~H~~------~paee~C~eCk~l~CaL~~Lqe~~qkie~~s 249 (685)
+|.. . ...-|... .++. --+-..|..|.-..|.++++.-|--..++..
T Consensus 255 ~arYe~l~lqk~l~~msdv~yCPr~--~Cq~p~~~d~~~~l~~CskCnFaFCtlCk~t~HG~s~Ck~~ 320 (445)
T KOG1814|consen 255 FARYEKLMLQKTLELMSDVVYCPRA--CCQLPVKQDPGRALAICSKCNFAFCTLCKLTWHGVSPCKVK 320 (445)
T ss_pred HHHHHHHHHHHHHHhhcccccCChh--hccCccccCchhhhhhhccCccHHHHHHHHhhcCCCcccCc
Confidence 2211 1 11123111 1111 1223458888888888888888875545443
No 69
>smart00343 ZnF_C2HC zinc finger.
Probab=88.07 E-value=0.23 Score=34.50 Aligned_cols=17 Identities=53% Similarity=1.398 Sum_probs=15.7
Q ss_pred cccccCCCCcccccCCC
Q 035975 364 TCYMCGSPNHLIRDCPA 380 (685)
Q Consensus 364 ~~~~~~~~~~~~~~~~~ 380 (685)
.||.||...|++++||.
T Consensus 1 ~C~~CG~~GH~~~~C~~ 17 (26)
T smart00343 1 KCYNCGKEGHIARDCPK 17 (26)
T ss_pred CCccCCCCCcchhhCCc
Confidence 49999999999999994
No 70
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=88.01 E-value=1.6 Score=46.14 Aligned_cols=8 Identities=38% Similarity=0.468 Sum_probs=4.2
Q ss_pred cchhhhhH
Q 035975 483 VLHHQDCE 490 (685)
Q Consensus 483 ~~~~~~~~ 490 (685)
-+++|+-|
T Consensus 235 ~~~~~~~q 242 (341)
T KOG2893|consen 235 EHEHQDYQ 242 (341)
T ss_pred cccccccc
Confidence 34555555
No 71
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=87.87 E-value=0.4 Score=51.73 Aligned_cols=60 Identities=18% Similarity=0.407 Sum_probs=42.5
Q ss_pred CCCcccccccccccccceec-cCCCCccchhHHHHHhhcCCCCCCCcCCCccccCCCccHHHHHHHHHH
Q 035975 134 FPSELKCSLCNTLFKEAVMI-PCCQHSFCEKCIRLVLVEKARCPKCFSSKCRLEDLLPNVSLRQAIEHF 201 (685)
Q Consensus 134 LeeeLtCPIClelf~dPVtL-pCCGHSFC~~CI~~~lk~~~sCPvCR~~~~~~~~L~pN~~L~nLVe~~ 201 (685)
+.+.|.||||.+.+..|+.- .= ||.-|..|-... ...||.|+..+. ++ .++.+..+++..
T Consensus 45 ~~~lleCPvC~~~l~~Pi~QC~n-GHlaCssC~~~~---~~~CP~Cr~~~g---~~-R~~amEkV~e~~ 105 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIFQCDN-GHLACSSCRTKV---SNKCPTCRLPIG---NI-RCRAMEKVAEAV 105 (299)
T ss_pred chhhccCchhhccCcccceecCC-CcEehhhhhhhh---cccCCccccccc---cH-HHHHHHHHHHhc
Confidence 45578999999999999854 34 899999998643 468999996432 22 455555555443
No 72
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=87.17 E-value=0.57 Score=46.56 Aligned_cols=20 Identities=25% Similarity=0.752 Sum_probs=18.4
Q ss_pred CcccccccccccccceeccC
Q 035975 136 SELKCSLCNTLFKEAVMIPC 155 (685)
Q Consensus 136 eeLtCPIClelf~dPVtLpC 155 (685)
++.+||||++...++|.|.|
T Consensus 1 ed~~CpICme~PHNAVLLlC 20 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLC 20 (162)
T ss_pred CCccCceeccCCCceEEEEe
Confidence 47899999999999999987
No 73
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.45 E-value=0.47 Score=53.69 Aligned_cols=72 Identities=38% Similarity=0.809 Sum_probs=52.9
Q ss_pred cCCCCCccccccc-ccccccceec-cCCCCccchhHHHHHhhcCCCCCCCcCCCccccCCCccHHHHHHHHHHHh
Q 035975 131 NGNFPSELKCSLC-NTLFKEAVMI-PCCQHSFCEKCIRLVLVEKARCPKCFSSKCRLEDLLPNVSLRQAIEHFLE 203 (685)
Q Consensus 131 ~e~LeeeLtCPIC-lelf~dPVtL-pCCGHSFC~~CI~~~lk~~~sCPvCR~~~~~~~~L~pN~~L~nLVe~~re 203 (685)
...+.+++.|++| .+.|.+...+ .||..+||..||.+.+.. ..|+.|.+.......+.++..+.......+.
T Consensus 213 v~~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~-~~~~~c~~~~~~~~~~~~p~~~r~~~n~~~a 286 (448)
T KOG0314|consen 213 VGELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALIS-KSMCVCGASNVLADDLLPPKTLRDTINRILA 286 (448)
T ss_pred hccCCccccCceecchhhHHHHHhhhhhcccCCcccccccccc-ccCCcchhhcccccccCCchhhHHHHHHHHh
Confidence 3567889999999 8899988887 899999999999887753 4455665534445666677666665555444
No 74
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=85.12 E-value=0.51 Score=39.38 Aligned_cols=45 Identities=24% Similarity=0.649 Sum_probs=35.6
Q ss_pred CCcccccccccccccceeccCCCCccchhHHHHHhhcCCCCCCCcCCC
Q 035975 135 PSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKARCPKCFSSK 182 (685)
Q Consensus 135 eeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~~~sCPvCR~~~ 182 (685)
..+..|-.|...-...++++| ||..|..|..-. .-..||.|.+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~pC-gH~I~~~~f~~~--rYngCPfC~~~~ 49 (55)
T PF14447_consen 5 QPEQPCVFCGFVGTKGTVLPC-GHLICDNCFPGE--RYNGCPFCGTPF 49 (55)
T ss_pred ccceeEEEccccccccccccc-cceeeccccChh--hccCCCCCCCcc
Confidence 446778889888888999998 999999997532 235799999743
No 75
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=84.85 E-value=0.32 Score=50.85 Aligned_cols=61 Identities=26% Similarity=0.682 Sum_probs=35.7
Q ss_pred cccccccccc-ccceeccCCCCccchhHHHHHhhcCCCCCCCcCCCccccCCCccHHHHHHHHHHHh
Q 035975 138 LKCSLCNTLF-KEAVMIPCCQHSFCEKCIRLVLVEKARCPKCFSSKCRLEDLLPNVSLRQAIEHFLE 203 (685)
Q Consensus 138 LtCPIClelf-~dPVtLpCCGHSFC~~CI~~~lk~~~sCPvCR~~~~~~~~L~pN~~L~nLVe~~re 203 (685)
+.|-.|...- .+|..|.-|+|.||..|...... ..||+|++. .....+..| |-.-|..|+.
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~--~~C~lCkk~-ir~i~l~~s--lp~~ik~~F~ 65 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKASSP--DVCPLCKKS-IRIIQLNRS--LPTDIKSYFA 65 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhcccCCc--cccccccce-eeeeecccc--cchhHHHHcc
Confidence 5577776533 35554443499999999865432 289999974 333333332 4444444443
No 76
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=84.56 E-value=5.4 Score=47.98 Aligned_cols=22 Identities=27% Similarity=0.218 Sum_probs=17.2
Q ss_pred ccccCCCCCCCCccCCcCCCcc
Q 035975 460 GYTMMGGPRTPVGVNAGRLGRS 481 (685)
Q Consensus 460 ~~~~m~g~~~~~~~~~~~~~~~ 481 (685)
|.+|||++++|..--.|+++-+
T Consensus 704 ~pg~~~~PPPP~~~~~gpgG~~ 725 (894)
T KOG0132|consen 704 GPGGHGIPPPPFFDRGGPGGPP 725 (894)
T ss_pred CCCCCCCCCCccccCCCCCCCC
Confidence 7889999999887766766644
No 77
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=84.53 E-value=0.79 Score=49.30 Aligned_cols=50 Identities=26% Similarity=0.698 Sum_probs=35.3
Q ss_pred ccccccc-ccccce----eccCCCCccchhHHHHHhhcC-CCCCCCcCCCccccCCCc
Q 035975 139 KCSLCNT-LFKEAV----MIPCCQHSFCEKCIRLVLVEK-ARCPKCFSSKCRLEDLLP 190 (685)
Q Consensus 139 tCPICle-lf~dPV----tLpCCGHSFC~~CI~~~lk~~-~sCPvCR~~~~~~~~L~p 190 (685)
.||+|.. .+.+|- +-+| +|+.|..|+...+... ..||.|.. +....+++.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C-~H~lCEsCvd~iF~~g~~~CpeC~~-iLRk~nfr~ 57 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINEC-GHRLCESCVDRIFSLGPAQCPECMV-ILRKNNFRV 57 (300)
T ss_pred CCcccccceecCccceeeeccc-cchHHHHHHHHHHhcCCCCCCcccc-hhhhcccch
Confidence 4899965 344442 2266 9999999999888755 57999985 555555543
No 78
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=84.34 E-value=3.1 Score=46.13 Aligned_cols=26 Identities=12% Similarity=-0.009 Sum_probs=17.6
Q ss_pred CCCCCCccCCcCCCccccchhhhhHH
Q 035975 466 GPRTPVGVNAGRLGRSRVLHHQDCEK 491 (685)
Q Consensus 466 g~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (685)
+..+=|++.--+||..||-++-.+.+
T Consensus 345 ~~~r~~~p~~~plSeAEFEdiM~RNr 370 (498)
T KOG4849|consen 345 LPPRHVNPQMFPLSEAEFEDIMTRNR 370 (498)
T ss_pred CCcccCCCCCccchHHHHHHHHhhcc
Confidence 33444666666799999988766544
No 79
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.61 E-value=0.71 Score=48.83 Aligned_cols=38 Identities=18% Similarity=0.183 Sum_probs=33.8
Q ss_pred CCCCCcccccccccccccceeccCCCCccchhHHHHHhh
Q 035975 132 GNFPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLV 170 (685)
Q Consensus 132 e~LeeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk 170 (685)
+.+.+.-.|.+|+..+.+||+++- ||.||+.||.+++.
T Consensus 38 DsiK~FdcCsLtLqPc~dPvit~~-GylfdrEaILe~il 75 (303)
T KOG3039|consen 38 DSIKPFDCCSLTLQPCRDPVITPD-GYLFDREAILEYIL 75 (303)
T ss_pred cccCCcceeeeecccccCCccCCC-CeeeeHHHHHHHHH
Confidence 456777789999999999999999 99999999998764
No 80
>PTZ00368 universal minicircle sequence binding protein (UMSBP); Provisional
Probab=83.61 E-value=0.63 Score=44.42 Aligned_cols=19 Identities=63% Similarity=1.440 Sum_probs=16.8
Q ss_pred CccccccCCCCcccccCCC
Q 035975 362 DRTCYMCGSPNHLIRDCPA 380 (685)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~ 380 (685)
..+||.||+.+||++|||.
T Consensus 129 ~~~C~~Cg~~gH~~~dCp~ 147 (148)
T PTZ00368 129 DKTCYNCGQTGHLSRDCPD 147 (148)
T ss_pred CCccccCCCcCcccccCCC
Confidence 5689999999999999985
No 81
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=83.34 E-value=0.41 Score=56.45 Aligned_cols=66 Identities=23% Similarity=0.478 Sum_probs=47.6
Q ss_pred CCCcccccccccccccceeccCCCCccchhHHHHHhhcC---CCCCCCcCCCccccCCCccHHHHHHHHHH
Q 035975 134 FPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEK---ARCPKCFSSKCRLEDLLPNVSLRQAIEHF 201 (685)
Q Consensus 134 LeeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~~---~sCPvCR~~~~~~~~L~pN~~L~nLVe~~ 201 (685)
+...+.|+||...+.+|+.+.| .|.||..|+...+... ..||+|+. ......++--.....++..+
T Consensus 18 ~~k~lEc~ic~~~~~~p~~~kc-~~~~l~~~~n~~f~~~~~~~~~~lc~~-~~eK~s~~Es~r~sq~vqe~ 86 (684)
T KOG4362|consen 18 MQKILECPICLEHVKEPSLLKC-DHIFLKFCLNKLFESKKGPKQCALCKS-DIEKRSLRESPRFSQLSKES 86 (684)
T ss_pred HhhhccCCceeEEeeccchhhh-hHHHHhhhhhceeeccCccccchhhhh-hhhhhhccccchHHHHHHHh
Confidence 5668999999999999999998 9999999998766543 46999985 33333333333444444433
No 82
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=83.21 E-value=0.54 Score=57.06 Aligned_cols=48 Identities=21% Similarity=0.648 Sum_probs=35.9
Q ss_pred CCCcccccccccccc-----cce-eccCCCCccchhHHHHHhhcC--CCCCCCcCC
Q 035975 134 FPSELKCSLCNTLFK-----EAV-MIPCCQHSFCEKCIRLVLVEK--ARCPKCFSS 181 (685)
Q Consensus 134 LeeeLtCPIClelf~-----dPV-tLpCCGHSFC~~CI~~~lk~~--~sCPvCR~~ 181 (685)
+.-.-.|+||..++. =|- +.+.|.|.|=.+|+..|++.. ..||+||..
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRse 1521 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSE 1521 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccc
Confidence 444567999999886 121 223359999999999999875 589999964
No 83
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.90 E-value=0.81 Score=50.96 Aligned_cols=45 Identities=18% Similarity=0.414 Sum_probs=36.4
Q ss_pred CCcccccccccccc---cceeccCCCCccchhHHHHHhhcC---CCCCCCcC
Q 035975 135 PSELKCSLCNTLFK---EAVMIPCCQHSFCEKCIRLVLVEK---ARCPKCFS 180 (685)
Q Consensus 135 eeeLtCPIClelf~---dPVtLpCCGHSFC~~CI~~~lk~~---~sCPvCR~ 180 (685)
..-|.|||=.+.-. .|+.+.| ||..|+.-|.+..++. ++||.|-.
T Consensus 332 HSvF~CPVlKeqtsdeNPPm~L~C-GHVISkdAlnrLS~ng~~sfKCPYCP~ 382 (394)
T KOG2817|consen 332 HSVFICPVLKEQTSDENPPMMLIC-GHVISKDALNRLSKNGSQSFKCPYCPV 382 (394)
T ss_pred cceeecccchhhccCCCCCeeeec-cceecHHHHHHHhhCCCeeeeCCCCCc
Confidence 34589999766554 5899998 9999999999888764 68999975
No 84
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.58 E-value=0.71 Score=52.75 Aligned_cols=47 Identities=23% Similarity=0.593 Sum_probs=36.0
Q ss_pred CCCcccccccccccc-----------------cceeccCCCCccchhHHHHHhhcC-CCCCCCcCC
Q 035975 134 FPSELKCSLCNTLFK-----------------EAVMIPCCQHSFCEKCIRLVLVEK-ARCPKCFSS 181 (685)
Q Consensus 134 LeeeLtCPIClelf~-----------------dPVtLpCCGHSFC~~CI~~~lk~~-~sCPvCR~~ 181 (685)
.+...-|+||...+. +-+.+|| -|.|=..|+.+|...- ..||+||..
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC-~HifH~~CL~~WMd~ykl~CPvCR~p 632 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPC-HHIFHRQCLLQWMDTYKLICPVCRCP 632 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccch-HHHHHHHHHHHHHhhhcccCCccCCC
Confidence 345567999987542 2345687 9999999999999854 489999964
No 85
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.38 E-value=0.52 Score=50.36 Aligned_cols=47 Identities=28% Similarity=0.591 Sum_probs=37.3
Q ss_pred CCcccccccccccccc----------eeccCCCCccchhHHHHHhhcC--CCCCCCcCCC
Q 035975 135 PSELKCSLCNTLFKEA----------VMIPCCQHSFCEKCIRLVLVEK--ARCPKCFSSK 182 (685)
Q Consensus 135 eeeLtCPIClelf~dP----------VtLpCCGHSFC~~CI~~~lk~~--~sCPvCR~~~ 182 (685)
.++-.|.||..-+..- ..|.| +|+|=..||..|.... .+||.|++.+
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsC-nHvFHEfCIrGWcivGKkqtCPYCKekV 280 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSC-NHVFHEFCIRGWCIVGKKQTCPYCKEKV 280 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeec-ccchHHHhhhhheeecCCCCCchHHHHh
Confidence 3467899998876543 47888 9999999999998754 4899999743
No 86
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.21 E-value=0.87 Score=50.75 Aligned_cols=42 Identities=24% Similarity=0.523 Sum_probs=31.0
Q ss_pred ccccccccccccc---eeccCCCCccchhHHHHHhhcC---CCCCCCc
Q 035975 138 LKCSLCNTLFKEA---VMIPCCQHSFCEKCIRLVLVEK---ARCPKCF 179 (685)
Q Consensus 138 LtCPIClelf~dP---VtLpCCGHSFC~~CI~~~lk~~---~sCPvCR 179 (685)
..|.||.+.+-.- -.+.-|||+|=..|+++|+... ..||.|+
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCcee
Confidence 4699996665321 2233249999999999999864 3799999
No 87
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=78.21 E-value=0.99 Score=56.40 Aligned_cols=48 Identities=29% Similarity=0.716 Sum_probs=41.1
Q ss_pred CCCCCcccccccccccc-cceeccCCCCccchhHHHHHhhcCCCCCCCcC
Q 035975 132 GNFPSELKCSLCNTLFK-EAVMIPCCQHSFCEKCIRLVLVEKARCPKCFS 180 (685)
Q Consensus 132 e~LeeeLtCPIClelf~-dPVtLpCCGHSFC~~CI~~~lk~~~sCPvCR~ 180 (685)
.++.....|+||++++. .-.+..| ||.||..|+..|+.....||.|..
T Consensus 1148 ~~~~~~~~c~ic~dil~~~~~I~~c-gh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1148 MNLSGHFVCEICLDILRNQGGIAGC-GHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred HHhhcccchHHHHHHHHhcCCeeee-chhHhhhHHHHHHHHhccCcchhh
Confidence 34556779999999999 5566676 999999999999999999999984
No 88
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.19 E-value=14 Score=42.25 Aligned_cols=11 Identities=9% Similarity=0.226 Sum_probs=5.1
Q ss_pred CCCCCCccccc
Q 035975 406 LAHVRPIANIY 416 (685)
Q Consensus 406 ~~~~~~~~~~y 416 (685)
.|+..|+-||+
T Consensus 419 yppp~p~f~m~ 429 (483)
T KOG2236|consen 419 YPPPSPSFPMF 429 (483)
T ss_pred CCCCCCCCCcc
Confidence 34444444444
No 89
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=77.87 E-value=1.7 Score=47.96 Aligned_cols=47 Identities=23% Similarity=0.634 Sum_probs=38.8
Q ss_pred CCCcccccccccccccceeccCCCCccchhHHHHH--hhcCCCCCCCcCC
Q 035975 134 FPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLV--LVEKARCPKCFSS 181 (685)
Q Consensus 134 LeeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~--lk~~~sCPvCR~~ 181 (685)
-++.-.|.||-+-++--..+|| +|..|..|-.+. +-....||.||+.
T Consensus 58 DEen~~C~ICA~~~TYs~~~PC-~H~~CH~Ca~RlRALY~~K~C~~CrTE 106 (493)
T COG5236 58 DEENMNCQICAGSTTYSARYPC-GHQICHACAVRLRALYMQKGCPLCRTE 106 (493)
T ss_pred ccccceeEEecCCceEEEeccC-CchHHHHHHHHHHHHHhccCCCccccc
Confidence 3557889999999998899998 999999998654 3345789999974
No 90
>PHA03096 p28-like protein; Provisional
Probab=77.73 E-value=1.2 Score=47.80 Aligned_cols=43 Identities=21% Similarity=0.390 Sum_probs=30.5
Q ss_pred ccccccccccccc-------eeccCCCCccchhHHHHHhhcC---CCCCCCcC
Q 035975 138 LKCSLCNTLFKEA-------VMIPCCQHSFCEKCIRLVLVEK---ARCPKCFS 180 (685)
Q Consensus 138 LtCPIClelf~dP-------VtLpCCGHSFC~~CI~~~lk~~---~sCPvCR~ 180 (685)
..|.||++....- -+|+.|-|.||..||..|.... ..||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 6799999966532 1345569999999999987654 24555553
No 91
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=76.30 E-value=2.1 Score=34.35 Aligned_cols=40 Identities=20% Similarity=0.600 Sum_probs=30.1
Q ss_pred ccccccc--ccccceeccCCC-----CccchhHHHHHhhcC--CCCCCCc
Q 035975 139 KCSLCNT--LFKEAVMIPCCQ-----HSFCEKCIRLVLVEK--ARCPKCF 179 (685)
Q Consensus 139 tCPICle--lf~dPVtLpCCG-----HSFC~~CI~~~lk~~--~sCPvCR 179 (685)
.|.||++ .-.+|..+|| . +.|=..|+.+|+... ..||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC-~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPC-RCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEecc-ccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4889986 4457888887 4 445578999999765 4799994
No 92
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=74.72 E-value=1 Score=38.56 Aligned_cols=45 Identities=27% Similarity=0.697 Sum_probs=20.5
Q ss_pred cccccccccccc-c---ceec---cCCCCccchhHHHHHhhcC-----------CCCCCCcCC
Q 035975 137 ELKCSLCNTLFK-E---AVMI---PCCQHSFCEKCIRLVLVEK-----------ARCPKCFSS 181 (685)
Q Consensus 137 eLtCPIClelf~-d---PVtL---pCCGHSFC~~CI~~~lk~~-----------~sCPvCR~~ 181 (685)
++.|+||..++. + |+.+ +-|+..|=..||.+|+... ..||.|+..
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~ 64 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSP 64 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCe
Confidence 578999998765 2 3222 1237777789999998731 269999974
No 93
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=74.64 E-value=8.5 Score=46.44 Aligned_cols=17 Identities=18% Similarity=0.061 Sum_probs=13.9
Q ss_pred cccCCCCCCCCccCCcC
Q 035975 461 YTMMGGPRTPVGVNAGR 477 (685)
Q Consensus 461 ~~~m~g~~~~~~~~~~~ 477 (685)
.|||.+|++|....+++
T Consensus 689 ~~~~~~m~P~~~~~g~p 705 (894)
T KOG0132|consen 689 RGGMRHMPPPPSHRGGP 705 (894)
T ss_pred CCCCCCCCCCCCCCCCC
Confidence 58999999998777775
No 94
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=73.19 E-value=4.8 Score=42.98 Aligned_cols=74 Identities=22% Similarity=0.270 Sum_probs=63.6
Q ss_pred ccCCCCCcccccccccccccceeccCCCCccchhHHHHHhhcC-CCCCCCcCCCccccCCCccHHHHHHHHHHHhhc
Q 035975 130 ENGNFPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEK-ARCPKCFSSKCRLEDLLPNVSLRQAIEHFLESQ 205 (685)
Q Consensus 130 ~~e~LeeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~~-~sCPvCR~~~~~~~~L~pN~~L~nLVe~~redq 205 (685)
...++.+.+.|.|-++++.+|+++|- |=+|=+.=|.+++... ..=|+-|. ......+.||+.|...|+.|+...
T Consensus 204 k~rEvpd~lcgkIt~el~~~pvi~ps-gIty~ra~I~Ehl~rvghfdpvtr~-~Lte~q~ipN~alkevIa~fl~~n 278 (284)
T KOG4642|consen 204 KKREVPDYLCGKITLELMREPVITPS-GITYDRADIEEHLQRVGHFDPVTRW-PLTEYQLIPNLALKEVIAAFLKEN 278 (284)
T ss_pred ccccccchhhhhhhHHhhcCCccCcc-ccchhHHHHHHHHHHhccCCchhcc-cCCHHhhccchHHHHHHHHHHHhc
Confidence 34577889999999999999999998 9999999999998764 45788885 566788999999999999998754
No 95
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=73.10 E-value=1.8 Score=46.92 Aligned_cols=24 Identities=42% Similarity=1.064 Sum_probs=21.0
Q ss_pred CccccccCCCCcccccCCCCCCCC
Q 035975 362 DRTCYMCGSPNHLIRDCPAALSPN 385 (685)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~ 385 (685)
+-+||+||--+|.|..||+..-+|
T Consensus 176 gY~CyRCGqkgHwIqnCpTN~Dpn 199 (427)
T COG5222 176 GYVCYRCGQKGHWIQNCPTNQDPN 199 (427)
T ss_pred ceeEEecCCCCchhhcCCCCCCCC
Confidence 789999999999999999865444
No 96
>PF07777 MFMR: G-box binding protein MFMR; InterPro: IPR012900 This region is found to the N terminus of IPR011616 from INTERPRO, which is a transcription factor domain. It is between 150 and 200 amino acids in length. The N-terminal half is rather rich in proline residues and has been termed the PRD (proline rich domain) [], whereas the C-terminal half is more polar and has been called the MFMR (multifunctional mosaic region). It has been suggested that this family is composed of three sub-families called A, B and C [], classified according to motif composition. It has been suggested that some of these motifs may be involved in mediating protein-protein interactions []. The MFMR region contains a nuclear localisation signal in bZIP opaque and GBF-2 []. The MFMR also contains a transregulatory activity in TAF-1. The MFMR in CPRF-2 contains cytoplasmic retention signals []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=73.04 E-value=9.1 Score=39.22 Aligned_cols=41 Identities=24% Similarity=0.544 Sum_probs=23.4
Q ss_pred CCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCcccccC-CCCCcc
Q 035975 379 PAALSPNPMLQQGALRGHAPPFWNGPSLAHVRPIANIYG-NHGMMP 423 (685)
Q Consensus 379 ~~~~~~~~m~~~~~~~g~~~~~~~g~~~~~~~~~~~~yg-~~gmmp 423 (685)
|+-..-+|-.+.| -.||||+-...+-.+|.-=|+| ++.|||
T Consensus 30 pDWs~mQAYyg~~----~~p~~f~s~va~sp~phPYMWG~~q~mmP 71 (189)
T PF07777_consen 30 PDWSAMQAYYGPG----APPPYFNSAVASSPQPHPYMWGPQQPMMP 71 (189)
T ss_pred CccHhhhhccCCC----CCCcccCcccCCCCCCCCcccCCCccccC
Confidence 4433344444444 3678888777655555555577 555654
No 97
>COG5180 PBP1 Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=72.78 E-value=6.8 Score=44.96 Aligned_cols=31 Identities=26% Similarity=0.456 Sum_probs=18.3
Q ss_pred CCCccCCCCCCCCCCCCCCcCCCccCCCCCCCC
Q 035975 419 HGMMPFNATMAPTTQFAVPAYMPSMFGGIPAYG 451 (685)
Q Consensus 419 ~gmmpf~~~~~p~~~~~~p~ymp~~~~g~~~~g 451 (685)
-|.||+|-|+||++-|-.|. |-|.+-|+-+|
T Consensus 544 ~G~~~~Y~P~~PQ~~~~~PS--P~~~P~~Gs~G 574 (654)
T COG5180 544 AGSMGMYMPFQPQPMFYHPS--PQMMPVMGSNG 574 (654)
T ss_pred cCCcccccCCCCCcccccCC--CCCCcccCCCC
Confidence 35677777888866665555 44444444444
No 98
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=71.63 E-value=1.7 Score=34.65 Aligned_cols=38 Identities=24% Similarity=0.580 Sum_probs=26.0
Q ss_pred ccccCCCCCcccccccCCcCCccccccCCCCcccccCC
Q 035975 342 LWVDTSGADKSFIESGRNRKDRTCYMCGSPNHLIRDCP 379 (685)
Q Consensus 342 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (685)
.+|...+|....+..-=-|-.+.|+.||..+|..++||
T Consensus 11 i~v~~~~g~~~~~~v~YE~lp~~C~~C~~~gH~~~~C~ 48 (49)
T PF14392_consen 11 IKVKFPEGESFWVKVKYERLPRFCFHCGRIGHSDKECP 48 (49)
T ss_pred EEEEeCCCcEEEEEEEECCcChhhcCCCCcCcCHhHcC
Confidence 34444333233345544555789999999999999998
No 99
>PTZ00368 universal minicircle sequence binding protein (UMSBP); Provisional
Probab=70.72 E-value=2.2 Score=40.68 Aligned_cols=20 Identities=55% Similarity=1.361 Sum_probs=17.4
Q ss_pred CccccccCCCCcccccCCCC
Q 035975 362 DRTCYMCGSPNHLIRDCPAA 381 (685)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~ 381 (685)
.++||.||.+.|++++||..
T Consensus 52 ~~~C~~Cg~~GH~~~~Cp~~ 71 (148)
T PTZ00368 52 ERSCYNCGKTGHLSRECPEA 71 (148)
T ss_pred CcccCCCCCcCcCcccCCCc
Confidence 56899999999999999874
No 100
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=69.42 E-value=3.8 Score=36.94 Aligned_cols=32 Identities=31% Similarity=0.525 Sum_probs=26.4
Q ss_pred eeccCCCCccchhHHHHHhhcCCCCCCCcCCC
Q 035975 151 VMIPCCQHSFCEKCIRLVLVEKARCPKCFSSK 182 (685)
Q Consensus 151 VtLpCCGHSFC~~CI~~~lk~~~sCPvCR~~~ 182 (685)
+...-|-|.|=.-||.+|+.....||++++..
T Consensus 49 v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w 80 (88)
T COG5194 49 VVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTW 80 (88)
T ss_pred EEEEecchHHHHHHHHHHHhhCCCCCCCCcee
Confidence 33333499999999999999989999999853
No 101
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=68.12 E-value=21 Score=39.91 Aligned_cols=15 Identities=27% Similarity=0.479 Sum_probs=9.9
Q ss_pred CCCcccccCCCCCcc
Q 035975 409 VRPIANIYGNHGMMP 423 (685)
Q Consensus 409 ~~~~~~~yg~~gmmp 423 (685)
+.|-..|||++..||
T Consensus 262 PpP~~t~~G~pP~pp 276 (498)
T KOG4849|consen 262 PPPQQTMLGNPPLPP 276 (498)
T ss_pred CCCccccCCCCCCCc
Confidence 455667888666665
No 102
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=65.15 E-value=10 Score=38.84 Aligned_cols=15 Identities=60% Similarity=1.444 Sum_probs=8.2
Q ss_pred cccccCCCCcccccC
Q 035975 364 TCYMCGSPNHLIRDC 378 (685)
Q Consensus 364 ~~~~~~~~~~~~~~~ 378 (685)
+||.||.-.||.|||
T Consensus 99 ~C~~Cg~~GH~~~dC 113 (190)
T COG5082 99 KCYNCGETGHLSRDC 113 (190)
T ss_pred ccccccccCcccccc
Confidence 455555555555555
No 103
>PF13917 zf-CCHC_3: Zinc knuckle
Probab=65.13 E-value=3.3 Score=32.87 Aligned_cols=19 Identities=32% Similarity=0.849 Sum_probs=17.7
Q ss_pred CccccccCCCCcccccCCC
Q 035975 362 DRTCYMCGSPNHLIRDCPA 380 (685)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~ 380 (685)
...|+.||.+.|+...||.
T Consensus 4 ~~~CqkC~~~GH~tyeC~~ 22 (42)
T PF13917_consen 4 RVRCQKCGQKGHWTYECPN 22 (42)
T ss_pred CCcCcccCCCCcchhhCCC
Confidence 5689999999999999996
No 104
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=62.67 E-value=4.4 Score=38.07 Aligned_cols=25 Identities=32% Similarity=0.608 Sum_probs=23.4
Q ss_pred CCCccchhHHHHHhhcCCCCCCCcC
Q 035975 156 CQHSFCEKCIRLVLVEKARCPKCFS 180 (685)
Q Consensus 156 CGHSFC~~CI~~~lk~~~sCPvCR~ 180 (685)
|-|.|=.-||.+|++....||+|.+
T Consensus 81 CNHaFH~hCisrWlktr~vCPLdn~ 105 (114)
T KOG2930|consen 81 CNHAFHFHCISRWLKTRNVCPLDNK 105 (114)
T ss_pred cchHHHHHHHHHHHhhcCcCCCcCc
Confidence 4999999999999999999999986
No 105
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=60.93 E-value=3.9 Score=41.81 Aligned_cols=18 Identities=50% Similarity=1.287 Sum_probs=17.4
Q ss_pred CccccccCCCCcccccCC
Q 035975 362 DRTCYMCGSPNHLIRDCP 379 (685)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~ 379 (685)
.++||.||--+|++||||
T Consensus 60 ~~~C~nCg~~GH~~~DCP 77 (190)
T COG5082 60 NPVCFNCGQNGHLRRDCP 77 (190)
T ss_pred ccccchhcccCcccccCC
Confidence 789999999999999999
No 106
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.80 E-value=40 Score=41.64 Aligned_cols=28 Identities=36% Similarity=0.613 Sum_probs=14.9
Q ss_pred CCCCcccccCCCC-CCCCcccccCCCCCC
Q 035975 369 GSPNHLIRDCPAA-LSPNPMLQQGALRGH 396 (685)
Q Consensus 369 ~~~~~~~~~~~~~-~~~~~m~~~~~~~g~ 396 (685)
|++|||+.--|.+ .++.++.+..+-.|+
T Consensus 22 g~~~~~a~~~~~~~~~p~p~~~~~~p~~~ 50 (1007)
T KOG1984|consen 22 GSSNSLAQAMPNGSINPPPPMQGTGPRGP 50 (1007)
T ss_pred CCCchhhhhccCCccCCCCCCCCCCCCCC
Confidence 5688888776662 233333444444443
No 107
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=58.49 E-value=5.7 Score=43.96 Aligned_cols=45 Identities=27% Similarity=0.812 Sum_probs=30.3
Q ss_pred Ccccccccccccc--cceeccC-CCCccchhHHHHHhhc-CCCCCCCcCC
Q 035975 136 SELKCSLCNTLFK--EAVMIPC-CQHSFCEKCIRLVLVE-KARCPKCFSS 181 (685)
Q Consensus 136 eeLtCPIClelf~--dPVtLpC-CGHSFC~~CI~~~lk~-~~sCPvCR~~ 181 (685)
++. ||+|.+.+. |--+.|| ||-..|+-|....-.. ...||.||..
T Consensus 14 ed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~ 62 (480)
T COG5175 14 EDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRK 62 (480)
T ss_pred ccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhh
Confidence 344 999998663 3344444 4877899888654333 3589999974
No 108
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=58.06 E-value=6.7 Score=43.06 Aligned_cols=46 Identities=24% Similarity=0.569 Sum_probs=36.9
Q ss_pred CCCcccccccccccc---cceeccCCCCccchhHHHHHhhcC---CCCCCCcC
Q 035975 134 FPSELKCSLCNTLFK---EAVMIPCCQHSFCEKCIRLVLVEK---ARCPKCFS 180 (685)
Q Consensus 134 LeeeLtCPIClelf~---dPVtLpCCGHSFC~~CI~~~lk~~---~sCPvCR~ 180 (685)
+..-++||+=.+.-+ .|+++.| ||..-..-+....++. ++||.|-.
T Consensus 333 fHs~FiCPVlKe~~t~ENpP~ml~C-gHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 333 FHSLFICPVLKELCTDENPPVMLEC-GHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred ccceeeccccHhhhcccCCCeeeec-cceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 345689999777665 5899998 9999999988877664 68999964
No 109
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=56.42 E-value=8.6 Score=31.08 Aligned_cols=43 Identities=28% Similarity=0.490 Sum_probs=23.1
Q ss_pred cccccccccccccceeccCCCCccchhHHHHHhhc-----CCCCCCCcC
Q 035975 137 ELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVE-----KARCPKCFS 180 (685)
Q Consensus 137 eLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~-----~~sCPvCR~ 180 (685)
.|.|||....+..|+...=|.|.-|.+= ..++.. ...||.|.+
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl-~~fl~~~~~~~~W~CPiC~~ 49 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFDL-ESFLESNQRTPKWKCPICNK 49 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EEH-HHHHHHHHHS---B-TTT--
T ss_pred eeeCCCCCCEEEeCccCCcCcccceECH-HHHHHHhhccCCeECcCCcC
Confidence 3789999999999998765699877543 223321 247999975
No 110
>KOG2375 consensus Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=55.73 E-value=45 Score=40.59 Aligned_cols=16 Identities=19% Similarity=0.058 Sum_probs=8.4
Q ss_pred CCCCCCccccccccccccCCCC
Q 035975 446 GIPAYGFDMEASCSGYTMMGGP 467 (685)
Q Consensus 446 g~~~~g~~~~~~~~~~~~m~g~ 467 (685)
+++++|-+. .-||||+
T Consensus 635 ~~~~~~t~~------~~~~~~~ 650 (756)
T KOG2375|consen 635 MASVPGTYF------VPGKGGN 650 (756)
T ss_pred CCCCccccc------ccccCCc
Confidence 455666333 4455665
No 111
>KOG4400 consensus E3 ubiquitin ligase interacting with arginine methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=55.60 E-value=7.9 Score=40.43 Aligned_cols=16 Identities=50% Similarity=1.392 Sum_probs=8.8
Q ss_pred ccccCCCCcccccCCC
Q 035975 365 CYMCGSPNHLIRDCPA 380 (685)
Q Consensus 365 ~~~~~~~~~~~~~~~~ 380 (685)
||.||.-.|+.++||.
T Consensus 146 Cy~Cg~~GH~s~~C~~ 161 (261)
T KOG4400|consen 146 CYSCGEQGHISDDCPE 161 (261)
T ss_pred cCCCCcCCcchhhCCC
Confidence 5555555555555553
No 112
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=55.49 E-value=4.3 Score=35.72 Aligned_cols=33 Identities=30% Similarity=0.735 Sum_probs=25.8
Q ss_pred CCCCccccccccccccccee--ccCCCCccchhHHH
Q 035975 133 NFPSELKCSLCNTLFKEAVM--IPCCQHSFCEKCIR 166 (685)
Q Consensus 133 ~LeeeLtCPIClelf~dPVt--LpCCGHSFC~~CI~ 166 (685)
.+.+.-.|++|...|.+.+. .|| ||.|-..|+.
T Consensus 74 ~i~~~~~C~vC~k~l~~~~f~~~p~-~~v~H~~C~~ 108 (109)
T PF10367_consen 74 VITESTKCSVCGKPLGNSVFVVFPC-GHVVHYSCIK 108 (109)
T ss_pred EECCCCCccCcCCcCCCceEEEeCC-CeEEeccccc
Confidence 45667789999998886643 366 9999999974
No 113
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=52.77 E-value=5.8 Score=43.45 Aligned_cols=40 Identities=35% Similarity=0.781 Sum_probs=27.9
Q ss_pred ccccccccccc-cceeccCCCCccchhHHHHHhhcCCCCCCCcC
Q 035975 138 LKCSLCNTLFK-EAVMIPCCQHSFCEKCIRLVLVEKARCPKCFS 180 (685)
Q Consensus 138 LtCPIClelf~-dPVtLpCCGHSFC~~CI~~~lk~~~sCPvCR~ 180 (685)
-.|--|-.-+. -=.+++| .|.||.+|... ...+.||.|-.
T Consensus 91 HfCd~Cd~PI~IYGRmIPC-kHvFCl~CAr~--~~dK~Cp~C~d 131 (389)
T KOG2932|consen 91 HFCDRCDFPIAIYGRMIPC-KHVFCLECARS--DSDKICPLCDD 131 (389)
T ss_pred EeecccCCcceeeeccccc-chhhhhhhhhc--CccccCcCccc
Confidence 45667755333 3456787 99999999853 23568999964
No 114
>PF06495 Transformer: Fruit fly transformer protein; InterPro: IPR010519 This family consists of transformer proteins from several Drosophila species and also from Ceratitis capitata (Mediterranean fruit fly). The transformer locus (tra) produces an RNA processing protein that alternatively splices the doublesex pre-mRNA in the sex determination hierarchy of Drosophila melanogaster [].; GO: 0006397 mRNA processing, 0046660 female sex differentiation, 0005634 nucleus
Probab=51.68 E-value=15 Score=37.26 Aligned_cols=13 Identities=23% Similarity=0.447 Sum_probs=6.1
Q ss_pred CCCCCCCCCcCCC
Q 035975 429 APTTQFAVPAYMP 441 (685)
Q Consensus 429 ~p~~~~~~p~ymp 441 (685)
.||+||+.|--.|
T Consensus 153 ~P~~p~~apy~~~ 165 (182)
T PF06495_consen 153 RPMPPYFAPYPRP 165 (182)
T ss_pred CCCCcccCccCCC
Confidence 4555555443333
No 115
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=49.14 E-value=16 Score=39.86 Aligned_cols=37 Identities=27% Similarity=0.737 Sum_probs=31.0
Q ss_pred CcccccccccccccceeccCC---CCccchhHHHHHhhcC
Q 035975 136 SELKCSLCNTLFKEAVMIPCC---QHSFCEKCIRLVLVEK 172 (685)
Q Consensus 136 eeLtCPIClelf~dPVtLpCC---GHSFC~~CI~~~lk~~ 172 (685)
.-|.|.+|.+-|.|-.++.|= .|.||.-|-.+.++..
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHHHHHhh
Confidence 459999999999998877641 6899999999988754
No 116
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=47.84 E-value=7.1 Score=43.94 Aligned_cols=43 Identities=33% Similarity=0.838 Sum_probs=35.1
Q ss_pred cccccccccccc-c---ceeccCCCCccchhHHHHHhhcC--CCCCCCcC
Q 035975 137 ELKCSLCNTLFK-E---AVMIPCCQHSFCEKCIRLVLVEK--ARCPKCFS 180 (685)
Q Consensus 137 eLtCPIClelf~-d---PVtLpCCGHSFC~~CI~~~lk~~--~sCPvCR~ 180 (685)
+|.|-.|.+.+- . --.+|| .|.|=..|+.+.+.++ .+||.||+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpC-sHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPC-SHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhhcCCcccccccch-hHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 789999999874 2 235787 9999999999998765 48999994
No 117
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.81 E-value=16 Score=38.57 Aligned_cols=51 Identities=27% Similarity=0.545 Sum_probs=39.1
Q ss_pred cccccccccccc--cceeccCCCCccchhHHHHHhhc--------CCCCCCCcCCCccccCC
Q 035975 137 ELKCSLCNTLFK--EAVMIPCCQHSFCEKCIRLVLVE--------KARCPKCFSSKCRLEDL 188 (685)
Q Consensus 137 eLtCPIClelf~--dPVtLpCCGHSFC~~CI~~~lk~--------~~sCPvCR~~~~~~~~L 188 (685)
.-.|.+|...+. +.+.|.| -|.|=.+|+.++... ...||.|...++...++
T Consensus 50 ~pNC~LC~t~La~gdt~RLvC-yhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~Nl 110 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDTTRLVC-YHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPINL 110 (299)
T ss_pred CCCCceeCCccccCcceeehh-hhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCccc
Confidence 456999998885 6788888 999999999988764 24799998765543333
No 118
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.35 E-value=12 Score=41.83 Aligned_cols=34 Identities=26% Similarity=0.714 Sum_probs=24.9
Q ss_pred cccccccccccccc----eeccCCCCccchhHHHHHhhc
Q 035975 137 ELKCSLCNTLFKEA----VMIPCCQHSFCEKCIRLVLVE 171 (685)
Q Consensus 137 eLtCPIClelf~dP----VtLpCCGHSFC~~CI~~~lk~ 171 (685)
..+|.||..-...+ .+..| +|.||..|+.+++..
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C-~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKC-GHRFCKDCVKQHIEV 183 (384)
T ss_pred cccCccCccccccHhhhHHHhcc-cchhhhHHhHHHhhh
Confidence 57899999333322 23456 999999999998874
No 119
>KOG1902 consensus Putative signal transduction protein involved in RNA splicing [Signal transduction mechanisms; RNA processing and modification]
Probab=46.13 E-value=33 Score=38.33 Aligned_cols=7 Identities=57% Similarity=1.578 Sum_probs=2.9
Q ss_pred CCCCCCC
Q 035975 397 APPFWNG 403 (685)
Q Consensus 397 ~~~~~~g 403 (685)
-+|||+|
T Consensus 317 p~p~~~g 323 (441)
T KOG1902|consen 317 PPPPWQG 323 (441)
T ss_pred CCccccC
Confidence 3444443
No 120
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=46.03 E-value=9.4 Score=31.41 Aligned_cols=36 Identities=33% Similarity=0.822 Sum_probs=25.3
Q ss_pred ccccceeccCCCCccchhHHHHHhhcCCCCCCCcCC
Q 035975 146 LFKEAVMIPCCQHSFCEKCIRLVLVEKARCPKCFSS 181 (685)
Q Consensus 146 lf~dPVtLpCCGHSFC~~CI~~~lk~~~sCPvCR~~ 181 (685)
.|.+--.+.|-.|-.|..|++..+..+..||.|..+
T Consensus 9 Wf~~k~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~ 44 (50)
T PF03854_consen 9 WFANKGLIKCSDHYLCLNCLTLMLSRSDRCPICGKP 44 (50)
T ss_dssp -S--SSEEE-SS-EEEHHHHHHT-SSSSEETTTTEE
T ss_pred hhcCCCeeeecchhHHHHHHHHHhccccCCCcccCc
Confidence 455556677768889999999999888899999863
No 121
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=45.06 E-value=1.3e+02 Score=33.11 Aligned_cols=30 Identities=23% Similarity=0.442 Sum_probs=15.9
Q ss_pred Ccccccccccccccceecc---CCCCccchhHH
Q 035975 136 SELKCSLCNTLFKEAVMIP---CCQHSFCEKCI 165 (685)
Q Consensus 136 eeLtCPIClelf~dPVtLp---CCGHSFC~~CI 165 (685)
+.-.|..|.+.+.+-.++. -|.|+-|..|-
T Consensus 32 eip~CagC~q~IlDrFilKvl~R~wHs~CLkCs 64 (383)
T KOG4577|consen 32 EIPICAGCDQHILDRFILKVLDRHWHSSCLKCS 64 (383)
T ss_pred ccccccchHHHHHHHHHHHHHhhhhhhhhcchh
Confidence 3456777766655543331 12666655554
No 122
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=44.58 E-value=14 Score=39.89 Aligned_cols=43 Identities=26% Similarity=0.743 Sum_probs=34.8
Q ss_pred cccccccccccc----cceeccCCCCccchhHHHHHhhcCCCCCCCcC
Q 035975 137 ELKCSLCNTLFK----EAVMIPCCQHSFCEKCIRLVLVEKARCPKCFS 180 (685)
Q Consensus 137 eLtCPIClelf~----dPVtLpCCGHSFC~~CI~~~lk~~~sCPvCR~ 180 (685)
...||||.+.+. .|..++| ||+-=..|+.........||+|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~C-gH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKC-GHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCc-ccchHHHHHHHHhccCCCCCcccc
Confidence 344999998764 6778888 998777898888777789999974
No 123
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.90 E-value=13 Score=45.27 Aligned_cols=42 Identities=29% Similarity=0.744 Sum_probs=34.0
Q ss_pred CcccccccccccccceeccCCCCccchhHHHHHhhcCCCCCCCcC
Q 035975 136 SELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKARCPKCFS 180 (685)
Q Consensus 136 eeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~~~sCPvCR~ 180 (685)
..-.|..|.-.+.-|++---|||+|=+.|+. .....||.|+.
T Consensus 839 q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e---~~~~~CP~C~~ 880 (933)
T KOG2114|consen 839 QVSKCSACEGTLDLPFVHFLCGHSYHQHCLE---DKEDKCPKCLP 880 (933)
T ss_pred eeeeecccCCccccceeeeecccHHHHHhhc---cCcccCCccch
Confidence 3468999999999997654349999999998 34568999984
No 124
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=42.33 E-value=35 Score=44.18 Aligned_cols=12 Identities=17% Similarity=0.166 Sum_probs=6.7
Q ss_pred CCCCCCccCCcC
Q 035975 466 GPRTPVGVNAGR 477 (685)
Q Consensus 466 g~~~~~~~~~~~ 477 (685)
|...|||+++-+
T Consensus 2076 ~~~a~~~~~~~~ 2087 (2220)
T KOG3598|consen 2076 HFAAPSGPVSSE 2087 (2220)
T ss_pred cccCCCCccccc
Confidence 345566666644
No 125
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=42.09 E-value=6.7 Score=41.62 Aligned_cols=44 Identities=18% Similarity=0.318 Sum_probs=22.5
Q ss_pred cccccccccccccceeccC----CCCccchhHHHHHhhcCCCCCCCcC
Q 035975 137 ELKCSLCNTLFKEAVMIPC----CQHSFCEKCIRLVLVEKARCPKCFS 180 (685)
Q Consensus 137 eLtCPIClelf~dPVtLpC----CGHSFC~~CI~~~lk~~~sCPvCR~ 180 (685)
.-.||||.....-.+...- --+.+|.-|-+.|.-....||.|..
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~ 219 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGN 219 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT--
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCC
Confidence 4699999997665555442 0245799999999877789999985
No 126
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=41.11 E-value=16 Score=40.67 Aligned_cols=28 Identities=21% Similarity=0.713 Sum_probs=20.5
Q ss_pred CCccchhHHHHHhhcC-------------CCCCCCcCCCcc
Q 035975 157 QHSFCEKCIRLVLVEK-------------ARCPKCFSSKCR 184 (685)
Q Consensus 157 GHSFC~~CI~~~lk~~-------------~sCPvCR~~~~~ 184 (685)
-.-.|..|+-+|+... ..||.||+.++.
T Consensus 312 RPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 312 RPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred cchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 4455889999998632 379999986553
No 127
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=40.49 E-value=34 Score=42.55 Aligned_cols=73 Identities=21% Similarity=0.331 Sum_probs=63.7
Q ss_pred CCCCCcccccccccccccceeccCCCCccchhHHHHHhhcCCCCCCCcCCCccccCCCccHHHHHHHHHHHhhc
Q 035975 132 GNFPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKARCPKCFSSKCRLEDLLPNVSLRQAIEHFLESQ 205 (685)
Q Consensus 132 e~LeeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~~~sCPvCR~~~~~~~~L~pN~~L~nLVe~~redq 205 (685)
.+..+++.=||-..++.+||.+|--+++.|+.=|.+++....+=|.||. ....+.+.+|..|..-|..+...+
T Consensus 865 ~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs~~tdPFNR~-pLt~d~v~pn~eLK~kI~~~~~ek 937 (943)
T KOG2042|consen 865 GDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLSDCTDPFNRE-PLTEDMVSPNEELKAKIRCWIKEK 937 (943)
T ss_pred ccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhcCCCCccccc-cCchhhcCCCHHHHHHHHHHHHHh
Confidence 4578899999999999999999944999999999999998888999996 567889999999999888876643
No 128
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.39 E-value=14 Score=41.63 Aligned_cols=36 Identities=22% Similarity=0.660 Sum_probs=29.8
Q ss_pred CCccccccccccccc-ceeccCCCCccchhHHHHHhhc
Q 035975 135 PSELKCSLCNTLFKE-AVMIPCCQHSFCEKCIRLVLVE 171 (685)
Q Consensus 135 eeeLtCPIClelf~d-PVtLpCCGHSFC~~CI~~~lk~ 171 (685)
.....|.||.+.+.. .+.+.| ||.||..|+..++..
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c-~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGC-GHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcchhhhcCC-CcHHHHHHHHHHhhh
Confidence 446899999998885 556666 999999999998874
No 129
>PF14353 CpXC: CpXC protein
Probab=38.15 E-value=28 Score=32.50 Aligned_cols=44 Identities=20% Similarity=0.348 Sum_probs=24.8
Q ss_pred cccccccccccccceeccCCCCccchhHHHHHhhcC---CCCCCCcCC
Q 035975 137 ELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEK---ARCPKCFSS 181 (685)
Q Consensus 137 eLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~~---~sCPvCR~~ 181 (685)
+++||-|...|.-.+-+.- --..=..=....+... .+||.|...
T Consensus 1 ~itCP~C~~~~~~~v~~~I-~~~~~p~l~e~il~g~l~~~~CP~Cg~~ 47 (128)
T PF14353_consen 1 EITCPHCGHEFEFEVWTSI-NADEDPELKEKILDGSLFSFTCPSCGHK 47 (128)
T ss_pred CcCCCCCCCeeEEEEEeEE-cCcCCHHHHHHHHcCCcCEEECCCCCCc
Confidence 4789999988876554432 2111122233333333 479999874
No 130
>PF15336 Auts2: Autism susceptibility gene 2 protein
Probab=37.99 E-value=93 Score=32.63 Aligned_cols=12 Identities=42% Similarity=0.681 Sum_probs=8.4
Q ss_pred CCccCCCCCCCC
Q 035975 440 MPSMFGGIPAYG 451 (685)
Q Consensus 440 mp~~~~g~~~~g 451 (685)
.++-|+|+++.|
T Consensus 100 Rs~~F~~Lg~l~ 111 (212)
T PF15336_consen 100 RSSTFSGLGALG 111 (212)
T ss_pred CCcccccccccc
Confidence 566777777766
No 131
>PF07777 MFMR: G-box binding protein MFMR; InterPro: IPR012900 This region is found to the N terminus of IPR011616 from INTERPRO, which is a transcription factor domain. It is between 150 and 200 amino acids in length. The N-terminal half is rather rich in proline residues and has been termed the PRD (proline rich domain) [], whereas the C-terminal half is more polar and has been called the MFMR (multifunctional mosaic region). It has been suggested that this family is composed of three sub-families called A, B and C [], classified according to motif composition. It has been suggested that some of these motifs may be involved in mediating protein-protein interactions []. The MFMR region contains a nuclear localisation signal in bZIP opaque and GBF-2 []. The MFMR also contains a transregulatory activity in TAF-1. The MFMR in CPRF-2 contains cytoplasmic retention signals []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=37.64 E-value=53 Score=33.86 Aligned_cols=18 Identities=17% Similarity=0.528 Sum_probs=10.5
Q ss_pred CCCcccccCCCCCC-CCCC
Q 035975 383 SPNPMLQQGALRGH-APPF 400 (685)
Q Consensus 383 ~~~~m~~~~~~~g~-~~~~ 400 (685)
.+.+.|-..+..|+ .+||
T Consensus 43 ~~p~~f~s~va~sp~phPY 61 (189)
T PF07777_consen 43 APPPYFNSAVASSPQPHPY 61 (189)
T ss_pred CCCcccCcccCCCCCCCCc
Confidence 34444555566666 6677
No 132
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=36.18 E-value=6 Score=42.55 Aligned_cols=90 Identities=16% Similarity=0.359 Sum_probs=51.1
Q ss_pred CCccccccccccccc---------ceeccCCCCccchhHHHH-Hhhc----------CCCCCCCcCCCccccCCCccHHH
Q 035975 135 PSELKCSLCNTLFKE---------AVMIPCCQHSFCEKCIRL-VLVE----------KARCPKCFSSKCRLEDLLPNVSL 194 (685)
Q Consensus 135 eeeLtCPIClelf~d---------PVtLpCCGHSFC~~CI~~-~lk~----------~~sCPvCR~~~~~~~~L~pN~~L 194 (685)
+.-+.|++|...+.. --+|+| ...||..-..+ |+-. .|.||.|++.+....+|+..
T Consensus 159 ~ka~~C~~C~K~YvSmpALkMHirTH~l~c-~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAH--- 234 (279)
T KOG2462|consen 159 KKAFSCKYCGKVYVSMPALKMHIRTHTLPC-ECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAH--- 234 (279)
T ss_pred cccccCCCCCceeeehHHHhhHhhccCCCc-ccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHH---
Confidence 446889999887752 123465 66666665543 3321 26899999865544444322
Q ss_pred HHHHHHHHhhcccccCccCCCCCCCCchhhHHHHHhhhhhhhcccccccccCC
Q 035975 195 RQAIEHFLESQILISGSENAYHRYAPDGESGIQAKDVSCAVTNLQREPELADS 247 (685)
Q Consensus 195 ~nLVe~~redq~~iCs~Eh~~H~~~paee~C~eCk~l~CaL~~Lqe~~qkie~ 247 (685)
+...-..+ ...|..|.+......-|.+|++..+-
T Consensus 235 ---mQTHS~~K----------------~~qC~~C~KsFsl~SyLnKH~ES~C~ 268 (279)
T KOG2462|consen 235 ---MQTHSDVK----------------KHQCPRCGKSFALKSYLNKHSESACL 268 (279)
T ss_pred ---HHhhcCCc----------------cccCcchhhHHHHHHHHHHhhhhccc
Confidence 11111111 24577787666655667777776553
No 133
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=35.58 E-value=1.3e+02 Score=34.53 Aligned_cols=7 Identities=43% Similarity=0.729 Sum_probs=2.8
Q ss_pred cCCCccH
Q 035975 186 EDLLPNV 192 (685)
Q Consensus 186 ~~L~pN~ 192 (685)
.+|..+.
T Consensus 184 ~nl~~~~ 190 (562)
T TIGR01628 184 KNLDPSV 190 (562)
T ss_pred eCCCCcC
Confidence 3444433
No 134
>KOG4400 consensus E3 ubiquitin ligase interacting with arginine methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=34.33 E-value=18 Score=37.88 Aligned_cols=23 Identities=35% Similarity=0.748 Sum_probs=18.8
Q ss_pred Ccccc--------ccCCCCcccccCCCCCCC
Q 035975 362 DRTCY--------MCGSPNHLIRDCPAALSP 384 (685)
Q Consensus 362 ~~~~~--------~~~~~~~~~~~~~~~~~~ 384 (685)
.+-|- .||++-|+.++||...+.
T Consensus 156 s~~C~~~~~~~c~~c~~~~h~~~~C~~~~~~ 186 (261)
T KOG4400|consen 156 SDDCPENKGGTCFRCGKVGHGSRDCPSKQKS 186 (261)
T ss_pred hhhCCCCCCCccccCCCcceecccCCccccc
Confidence 56786 799999999999987766
No 135
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=34.19 E-value=18 Score=29.17 Aligned_cols=37 Identities=30% Similarity=0.629 Sum_probs=22.6
Q ss_pred CcccccccccccccceeccCCCCccchhHHHHHhhc--CCCCCCCcC
Q 035975 136 SELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVE--KARCPKCFS 180 (685)
Q Consensus 136 eeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~--~~sCPvCR~ 180 (685)
+.++||.|.+.|... . ++.-|....... ...||+|..
T Consensus 1 ~~f~CP~C~~~~~~~-~-------L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 1 DSFTCPYCGKGFSES-S-------LVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CCcCCCCCCCccCHH-H-------HHHHHHhHCcCCCCCccCCCchh
Confidence 368999999954432 2 223355554433 247999974
No 136
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=33.30 E-value=16 Score=38.98 Aligned_cols=44 Identities=25% Similarity=0.819 Sum_probs=32.1
Q ss_pred ccccccccc-ccccce----eccCCCCccchhHHHHHhhcCC-CCC--CCcC
Q 035975 137 ELKCSLCNT-LFKEAV----MIPCCQHSFCEKCIRLVLVEKA-RCP--KCFS 180 (685)
Q Consensus 137 eLtCPICle-lf~dPV----tLpCCGHSFC~~CI~~~lk~~~-sCP--vCR~ 180 (685)
+-.||||.. .+.+|- +-|-|-|..|-.|+.+.+.... .|| -|.+
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 568999975 344552 2242399999999999987764 699 7875
No 137
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=32.94 E-value=21 Score=34.88 Aligned_cols=44 Identities=20% Similarity=0.431 Sum_probs=30.9
Q ss_pred ccccccccccccc--c-eeccCC-----CCccchhHHHHHhhcCCCCCCCcC
Q 035975 137 ELKCSLCNTLFKE--A-VMIPCC-----QHSFCEKCIRLVLVEKARCPKCFS 180 (685)
Q Consensus 137 eLtCPIClelf~d--P-VtLpCC-----GHSFC~~CI~~~lk~~~sCPvCR~ 180 (685)
.+.|.||++.+.+ - |.++|- .|-||..|+.+|-.....=|-=|.
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~~rDPfnR~ 77 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRERNRDPFNRN 77 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhccCCCcccc
Confidence 6889999998887 3 334541 256899999999655555565443
No 138
>PHA02862 5L protein; Provisional
Probab=32.43 E-value=32 Score=34.22 Aligned_cols=42 Identities=24% Similarity=0.449 Sum_probs=29.3
Q ss_pred cccccccccccceeccCCCCcc-----chhHHHHHhhcC--CCCCCCcCCC
Q 035975 139 KCSLCNTLFKEAVMIPCCQHSF-----CEKCIRLVLVEK--ARCPKCFSSK 182 (685)
Q Consensus 139 tCPIClelf~dPVtLpCCGHSF-----C~~CI~~~lk~~--~sCPvCR~~~ 182 (685)
.|-||.+--.+. ..|| ..+= =+.|+.+|+... ..|+.|+.++
T Consensus 4 iCWIC~~~~~e~-~~PC-~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY 52 (156)
T PHA02862 4 ICWICNDVCDER-NNFC-GCNEEYKVVHIKCMQLWINYSKKKECNLCKTKY 52 (156)
T ss_pred EEEEecCcCCCC-cccc-cccCcchhHHHHHHHHHHhcCCCcCccCCCCeE
Confidence 688999876444 4676 2211 168999999765 4799999753
No 139
>KOG4594 consensus Sequence-specific single-stranded-DNA-binding protein [Replication, recombination and repair; Transcription; General function prediction only]
Probab=32.38 E-value=1.9e+02 Score=31.96 Aligned_cols=13 Identities=23% Similarity=0.388 Sum_probs=6.4
Q ss_pred CCCCccCCCCCCC
Q 035975 418 NHGMMPFNATMAP 430 (685)
Q Consensus 418 ~~gmmpf~~~~~p 430 (685)
++|+.|=..||+|
T Consensus 143 Ppg~~pG~qPllP 155 (354)
T KOG4594|consen 143 PPGGVPGSQPLLP 155 (354)
T ss_pred CCCCCCCCCccCC
Confidence 4454554445555
No 140
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=32.17 E-value=36 Score=27.12 Aligned_cols=35 Identities=29% Similarity=0.832 Sum_probs=21.1
Q ss_pred cccccccccc--ceeccCCCCccch--------hHHHHHhhcC--CCCCCC
Q 035975 140 CSLCNTLFKE--AVMIPCCQHSFCE--------KCIRLVLVEK--ARCPKC 178 (685)
Q Consensus 140 CPIClelf~d--PVtLpCCGHSFC~--------~CI~~~lk~~--~sCPvC 178 (685)
|-||++.-.+ |.+.|| .|. .|+.+|+... ..|++|
T Consensus 1 CrIC~~~~~~~~~li~pC----~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPC----RCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SS----S-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceeccc----ccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 6678776542 577787 344 4999998754 578887
No 141
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.04 E-value=19 Score=37.21 Aligned_cols=36 Identities=31% Similarity=0.790 Sum_probs=28.1
Q ss_pred ccccccccccceeccCCCCc-cchhHHHHHhhcCCCCCCCcC
Q 035975 140 CSLCNTLFKEAVMIPCCQHS-FCEKCIRLVLVEKARCPKCFS 180 (685)
Q Consensus 140 CPIClelf~dPVtLpCCGHS-FC~~CI~~~lk~~~sCPvCR~ 180 (685)
|-+|.+-=..-+.+|| -|. +|..|-.. ...||+|+.
T Consensus 161 Cr~C~~~~~~VlllPC-rHl~lC~~C~~~----~~~CPiC~~ 197 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPC-RHLCLCGICDES----LRICPICRS 197 (207)
T ss_pred ceecCcCCceEEeecc-cceEeccccccc----CccCCCCcC
Confidence 9999987777778898 774 88888643 346999985
No 142
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=32.03 E-value=1.6e+02 Score=34.50 Aligned_cols=22 Identities=27% Similarity=0.679 Sum_probs=18.2
Q ss_pred ccccccCCCCcccccCCCCCCC
Q 035975 363 RTCYMCGSPNHLIRDCPAALSP 384 (685)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~ 384 (685)
++|..||.-.|+.+||+.-...
T Consensus 286 n~c~~cg~~gH~~~dc~~~~q~ 307 (554)
T KOG0119|consen 286 NVCKICGPLGHISIDCKVNDQQ 307 (554)
T ss_pred ccccccCCcccccccCCCcccc
Confidence 3999999999999999986333
No 143
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.50 E-value=3.1e+02 Score=34.49 Aligned_cols=9 Identities=44% Similarity=0.682 Sum_probs=3.5
Q ss_pred cCCCCCCCC
Q 035975 423 PFNATMAPT 431 (685)
Q Consensus 423 pf~~~~~p~ 431 (685)
|+++.|.|+
T Consensus 192 pp~a~~~~p 200 (1007)
T KOG1984|consen 192 PPGAQMQPP 200 (1007)
T ss_pred CCccCCCCC
Confidence 343333333
No 144
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=30.88 E-value=56 Score=32.93 Aligned_cols=53 Identities=19% Similarity=0.266 Sum_probs=31.1
Q ss_pred CCcccccccccccccceeccCCCCccchhHHHHHhhcCCCCCCCcCCCccccCCCccHHHHHHHHHHHh
Q 035975 135 PSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKARCPKCFSSKCRLEDLLPNVSLRQAIEHFLE 203 (685)
Q Consensus 135 eeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~~~sCPvCR~~~~~~~~L~pN~~L~nLVe~~re 203 (685)
...+.||.|..-|.- ...+...|.||.|...+...++-..-..|...|+.+..
T Consensus 115 ~~~Y~Cp~C~~rytf----------------~eA~~~~F~Cp~Cg~~L~~~dn~~~~~~l~~~I~~l~~ 167 (178)
T PRK06266 115 NMFFFCPNCHIRFTF----------------DEAMEYGFRCPQCGEMLEEYDNSELIKELKEQIKELEE 167 (178)
T ss_pred CCEEECCCCCcEEeH----------------HHHhhcCCcCCCCCCCCeecccHHHHHHHHHHHHHHHH
Confidence 457889888754431 12334578999999755444433333445555555544
No 145
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=29.89 E-value=8.5 Score=33.73 Aligned_cols=39 Identities=28% Similarity=0.581 Sum_probs=21.4
Q ss_pred cccccccccccccceeccCCCCccchhHHHHHhhcCCCCCCCcCC
Q 035975 137 ELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKARCPKCFSS 181 (685)
Q Consensus 137 eLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~~~sCPvCR~~ 181 (685)
++.||.|...|.. .- ++.+|..|-..+ .....||.|...
T Consensus 1 e~~CP~C~~~L~~----~~-~~~~C~~C~~~~-~~~a~CPdC~~~ 39 (70)
T PF07191_consen 1 ENTCPKCQQELEW----QG-GHYHCEACQKDY-KKEAFCPDCGQP 39 (70)
T ss_dssp --B-SSS-SBEEE----ET-TEEEETTT--EE-EEEEE-TTT-SB
T ss_pred CCcCCCCCCccEE----eC-CEEECccccccc-eecccCCCcccH
Confidence 4789999987542 22 788899998643 234579999864
No 146
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=29.58 E-value=49 Score=39.44 Aligned_cols=71 Identities=17% Similarity=0.353 Sum_probs=48.7
Q ss_pred CCCCCcccccccccccccceeccCCCCccchhHHHHHhhcC----CCCCCCcCCCccccCCCccHHHHHHHHHHHh
Q 035975 132 GNFPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEK----ARCPKCFSSKCRLEDLLPNVSLRQAIEHFLE 203 (685)
Q Consensus 132 e~LeeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~~----~sCPvCR~~~~~~~~L~pN~~L~nLVe~~re 203 (685)
..+.--|.|||++..+.-|..---|.|.-|.+-+.-...+. ..||+|.+ ....++|..+..+.+++..+..
T Consensus 301 t~~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~-~~~~e~l~iD~~~~~iL~~~~~ 375 (636)
T KOG2169|consen 301 TSLRVSLNCPLSKMRMSLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQK-AAPFEGLIIDGYFLNILQSCQA 375 (636)
T ss_pred ccceeEecCCcccceeecCCcccccccceecchhhhHHhccCCCeeeCccCCc-cccccchhhhHHHHHHHhhccC
Confidence 45666899999988887776543348876665543222221 37999996 6778888888888888766544
No 147
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=29.51 E-value=15 Score=40.02 Aligned_cols=43 Identities=14% Similarity=0.327 Sum_probs=31.5
Q ss_pred cccccccccccccceecc----CCC--CccchhHHHHHhhcCCCCCCCcC
Q 035975 137 ELKCSLCNTLFKEAVMIP----CCQ--HSFCEKCIRLVLVEKARCPKCFS 180 (685)
Q Consensus 137 eLtCPIClelf~dPVtLp----CCG--HSFC~~CI~~~lk~~~sCPvCR~ 180 (685)
.-.||||...-.-.++.. - | +.+|.-|-++|--....||.|..
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~-G~RyL~CslC~teW~~~R~~C~~Cg~ 232 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKET-GLRYLSCSLCATEWHYVRVKCSHCEE 232 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCC-CceEEEcCCCCCcccccCccCCCCCC
Confidence 458999998765443321 2 3 45699999999887889999985
No 148
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=29.19 E-value=51 Score=25.94 Aligned_cols=38 Identities=18% Similarity=0.774 Sum_probs=21.4
Q ss_pred ccccccccccceecc---CCCCccchhHHHHHhhcCC--CCCCC
Q 035975 140 CSLCNTLFKEAVMIP---CCQHSFCEKCIRLVLVEKA--RCPKC 178 (685)
Q Consensus 140 CPIClelf~dPVtLp---CCGHSFC~~CI~~~lk~~~--sCPvC 178 (685)
|.+|.+++..-+.=+ | +-.+=..|+..++.... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C-~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDC-NVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S---EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCcc-CchHHHHHHHHHHhcCCCCCCcCC
Confidence 678888887766544 4 55555678888887664 79987
No 149
>PF05660 DUF807: Coxiella burnetii protein of unknown function (DUF807); InterPro: IPR008525 This family consists of several proteins of unknown function from Coxiella burnetii (the causative agent of a zoonotic disease called Q fever).
Probab=28.70 E-value=35 Score=33.12 Aligned_cols=33 Identities=24% Similarity=0.523 Sum_probs=28.3
Q ss_pred ecccCccCCCCCCeEEec-cCCCcccCCCCCCCC
Q 035975 11 IKKTNEVKPSQPKIEEIN-FDDFGVDLCPALNGN 43 (685)
Q Consensus 11 ~~~~~~~~~~~p~~~~i~-~dD~~~~~~p~~~~~ 43 (685)
.-.++.|+--||-+++|+ |||..-+-||+....
T Consensus 46 fls~r~vqetQp~~vhi~v~d~~n~~fc~r~~K~ 79 (142)
T PF05660_consen 46 FLSARNVQETQPAVVHISVMDDANETFCPRVTKA 79 (142)
T ss_pred EEeccchhhcCCceEEEEEEecccccccccceee
Confidence 345678899999999999 999999999997664
No 150
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=28.48 E-value=2.1e+02 Score=32.91 Aligned_cols=41 Identities=17% Similarity=0.120 Sum_probs=21.7
Q ss_pred CCCCCCCCCCCCC-CCcccccCCCCCccCCCCCCC-CCCCCCCcCCCccC
Q 035975 397 APPFWNGPSLAHV-RPIANIYGNHGMMPFNATMAP-TTQFAVPAYMPSMF 444 (685)
Q Consensus 397 ~~~~~~g~~~~~~-~~~~~~yg~~gmmpf~~~~~p-~~~~~~p~ymp~~~ 444 (685)
+|+|+|-+.+|+. ..|-.+|+.+ ||.| -++.+++++||..-
T Consensus 326 ~p~~~q~p~~Pp~~~l~Pppp~p~-------p~~PP~p~~~~~~r~P~gp 368 (487)
T KOG4672|consen 326 SPTNFQPPYGPPPGMLFPPPPPPP-------PMRPPHPGNGMPPRMPPGP 368 (487)
T ss_pred ccCcCCCCCCCCCcccCCCCCCCC-------CCCCCCCCCCCCCCCCCCC
Confidence 7777776655433 2233333333 4443 35667777777543
No 151
>KOG1902 consensus Putative signal transduction protein involved in RNA splicing [Signal transduction mechanisms; RNA processing and modification]
Probab=28.30 E-value=88 Score=35.15 Aligned_cols=13 Identities=15% Similarity=-0.041 Sum_probs=5.8
Q ss_pred CCCCCCCCCCCCC
Q 035975 397 APPFWNGPSLAHV 409 (685)
Q Consensus 397 ~~~~~~g~~~~~~ 409 (685)
++.|.+|++.+++
T Consensus 309 ~~~f~nm~p~p~~ 321 (441)
T KOG1902|consen 309 VREFHNMGPPPPW 321 (441)
T ss_pred cchhhhcCCCccc
Confidence 3444454444433
No 152
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.26 E-value=1.3e+02 Score=34.96 Aligned_cols=9 Identities=11% Similarity=-0.097 Sum_probs=4.5
Q ss_pred CCCCCCCCC
Q 035975 399 PFWNGPSLA 407 (685)
Q Consensus 399 ~~~~g~~~~ 407 (685)
|++++..+|
T Consensus 424 p~f~m~~~h 432 (483)
T KOG2236|consen 424 PSFPMFQPH 432 (483)
T ss_pred CCCCccCCC
Confidence 456665333
No 153
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=27.73 E-value=1.5e+02 Score=34.16 Aligned_cols=8 Identities=25% Similarity=0.310 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 035975 192 VSLRQAIE 199 (685)
Q Consensus 192 ~~L~nLVe 199 (685)
..|.++..
T Consensus 193 e~L~~~F~ 200 (562)
T TIGR01628 193 DKLRELFA 200 (562)
T ss_pred HHHHHHHH
Confidence 33444433
No 154
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=26.67 E-value=36 Score=31.24 Aligned_cols=37 Identities=24% Similarity=0.624 Sum_probs=29.0
Q ss_pred cccccccccccccceeccCCCCccchhHHHHHhhcCCCCCCCcCCCc
Q 035975 137 ELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKARCPKCFSSKC 183 (685)
Q Consensus 137 eLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~~~sCPvCR~~~~ 183 (685)
.-.|-||...+..+ |+.||..|-.. ...|..|.+.+.
T Consensus 44 ~~~C~~CK~~v~q~------g~~YCq~CAYk----kGiCamCGKki~ 80 (90)
T PF10235_consen 44 SSKCKICKTKVHQP------GAKYCQTCAYK----KGICAMCGKKIL 80 (90)
T ss_pred CccccccccccccC------CCccChhhhcc----cCcccccCCeec
Confidence 45799999988776 89999999642 357999997543
No 155
>PF08844 DUF1815: Domain of unknown function (DUF1815); InterPro: IPR014943 This entry is about 100 amino acids in length and is functionally uncharacterised.
Probab=26.46 E-value=27 Score=32.53 Aligned_cols=8 Identities=50% Similarity=1.402 Sum_probs=6.2
Q ss_pred CccccccC
Q 035975 362 DRTCYMCG 369 (685)
Q Consensus 362 ~~~~~~~~ 369 (685)
--+||+||
T Consensus 32 ~AsCYtC~ 39 (105)
T PF08844_consen 32 LASCYTCG 39 (105)
T ss_pred eeEEEecC
Confidence 35899994
No 156
>KOG2673 consensus Uncharacterized conserved protein, contains PSP domain [Function unknown]
Probab=26.21 E-value=34 Score=39.40 Aligned_cols=18 Identities=50% Similarity=1.304 Sum_probs=16.7
Q ss_pred CccccccCCCCcccccCCC
Q 035975 362 DRTCYMCGSPNHLIRDCPA 380 (685)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~ 380 (685)
++ |..||.-.|-+||||.
T Consensus 129 ~~-CFNC~g~~hsLrdC~r 146 (485)
T KOG2673|consen 129 DP-CFNCGGTPHSLRDCPR 146 (485)
T ss_pred cc-ccccCCCCCccccCCC
Confidence 44 9999999999999998
No 157
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.18 E-value=58 Score=29.11 Aligned_cols=42 Identities=24% Similarity=0.537 Sum_probs=26.6
Q ss_pred cceeccCCCCccchhHHHHHhhcCCCCCCCcCCCccccCCCccHHH
Q 035975 149 EAVMIPCCQHSFCEKCIRLVLVEKARCPKCFSSKCRLEDLLPNVSL 194 (685)
Q Consensus 149 dPVtLpCCGHSFC~~CI~~~lk~~~sCPvCR~~~~~~~~L~pN~~L 194 (685)
+..+-.- .++||..|.+..+ ...||.|.-. .....++|...|
T Consensus 21 dA~ICtf-EcTFCadCae~~l--~g~CPnCGGe-lv~RP~RPaa~L 62 (84)
T COG3813 21 DARICTF-ECTFCADCAENRL--HGLCPNCGGE-LVARPIRPAAKL 62 (84)
T ss_pred ceeEEEE-eeehhHhHHHHhh--cCcCCCCCch-hhcCcCChHHHH
Confidence 3343333 6799999998765 4589999863 334445554333
No 158
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=25.89 E-value=21 Score=39.21 Aligned_cols=34 Identities=21% Similarity=0.483 Sum_probs=26.0
Q ss_pred Cccccccccccccc-c--eeccCCCCccchhHHHHHhh
Q 035975 136 SELKCSLCNTLFKE-A--VMIPCCQHSFCEKCIRLVLV 170 (685)
Q Consensus 136 eeLtCPIClelf~d-P--VtLpCCGHSFC~~CI~~~lk 170 (685)
..-.|.||+-=|.+ | +.|+| .|-|=..|+.+++.
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C-~Hy~H~~ClaRyl~ 150 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTAC-DHYMHFACLARYLT 150 (368)
T ss_pred CCCceEEEEEeecCCCceeeehh-HHHHHHHHHHHHHH
Confidence 36789999988864 3 45677 99998889877764
No 159
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.76 E-value=35 Score=37.43 Aligned_cols=30 Identities=17% Similarity=0.118 Sum_probs=20.8
Q ss_pred CCCcccCCCCCCCCCCCCcccccccccccc
Q 035975 30 DDFGVDLCPALNGNLSCSDVDDVDKNICVG 59 (685)
Q Consensus 30 dD~~~~~~p~~~~~~~~S~vdd~dk~i~~g 59 (685)
-|+.-.+.....+.+|--|.++-.+.|.|.
T Consensus 189 ~dv~L~V~~tr~~~ls~qD~n~~iq~i~I~ 218 (381)
T KOG3899|consen 189 ADVRLQVDNTRMPMLSNQDENERIQSIFIK 218 (381)
T ss_pred cceEEEecccccCcCCCcccCcceeEEEEE
Confidence 456666667777777777777677777765
No 160
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.49 E-value=49 Score=35.68 Aligned_cols=55 Identities=15% Similarity=0.385 Sum_probs=35.2
Q ss_pred CCcccccccccccccc---eeccCCCCccchhHHHHHhhcCCCCCCCcCCCccccCCCcc
Q 035975 135 PSELKCSLCNTLFKEA---VMIPCCQHSFCEKCIRLVLVEKARCPKCFSSKCRLEDLLPN 191 (685)
Q Consensus 135 eeeLtCPIClelf~dP---VtLpCCGHSFC~~CI~~~lk~~~sCPvCR~~~~~~~~L~pN 191 (685)
...+.|||-.-.|..- ..+-||||.|-..-+.+.- ...|++|...+...+.+..|
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik--as~C~~C~a~y~~~dvIvlN 166 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK--ASVCHVCGAAYQEDDVIVLN 166 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh--hccccccCCcccccCeEeeC
Confidence 4579999976655433 2334569999887776543 46899999854333333333
No 161
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=25.46 E-value=21 Score=32.17 Aligned_cols=32 Identities=28% Similarity=0.651 Sum_probs=24.5
Q ss_pred ceeccCCCCccchhHHHHHhhcC---CCCCCCcCC
Q 035975 150 AVMIPCCQHSFCEKCIRLVLVEK---ARCPKCFSS 181 (685)
Q Consensus 150 PVtLpCCGHSFC~~CI~~~lk~~---~sCPvCR~~ 181 (685)
|..+-=|.|.|=.-||.+|+... ..||.||+.
T Consensus 45 PLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~ 79 (84)
T KOG1493|consen 45 PLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQT 79 (84)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCccccccCCcchhe
Confidence 44443349999999999999754 479999974
No 162
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=25.43 E-value=41 Score=40.30 Aligned_cols=21 Identities=33% Similarity=0.730 Sum_probs=11.6
Q ss_pred ccccccccccccceeccCCCCccchhHH
Q 035975 138 LKCSLCNTLFKEAVMIPCCQHSFCEKCI 165 (685)
Q Consensus 138 LtCPIClelf~dPVtLpCCGHSFC~~CI 165 (685)
+.||-|..... - +..||..|-
T Consensus 2 ~~Cp~Cg~~n~------~-~akFC~~CG 22 (645)
T PRK14559 2 LICPQCQFENP------N-NNRFCQKCG 22 (645)
T ss_pred CcCCCCCCcCC------C-CCccccccC
Confidence 45777766432 2 455666663
No 163
>PF13966 zf-RVT: zinc-binding in reverse transcriptase
Probab=25.35 E-value=39 Score=29.34 Aligned_cols=21 Identities=43% Similarity=0.902 Sum_probs=17.8
Q ss_pred CccccccCC----CCcccccCCCCC
Q 035975 362 DRTCYMCGS----PNHLIRDCPAAL 382 (685)
Q Consensus 362 ~~~~~~~~~----~~~~~~~~~~~~ 382 (685)
+..|+.||. -+||..+||.+.
T Consensus 59 ~~~C~~C~~~~Et~~Hlf~~C~~a~ 83 (86)
T PF13966_consen 59 DPICPLCGNEEETIEHLFFHCPFAR 83 (86)
T ss_pred CCccccCCCccccccceeccCcCcc
Confidence 568999996 689999999864
No 164
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=25.13 E-value=24 Score=36.79 Aligned_cols=11 Identities=18% Similarity=0.005 Sum_probs=0.0
Q ss_pred ccccCCCCCCC
Q 035975 460 GYTMMGGPRTP 470 (685)
Q Consensus 460 ~~~~m~g~~~~ 470 (685)
|-+|+.|.+.|
T Consensus 198 g~~~~~~~p~~ 208 (214)
T PF04959_consen 198 GQGGYYGKPRN 208 (214)
T ss_dssp -----------
T ss_pred ccccccccccc
Confidence 44455555555
No 165
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=24.39 E-value=56 Score=30.37 Aligned_cols=59 Identities=29% Similarity=0.635 Sum_probs=33.8
Q ss_pred cccccccccccccceec--------cC--CCCccchhHHHHHhhc---------CCCCCCCcCCCcc------ccCCCcc
Q 035975 137 ELKCSLCNTLFKEAVMI--------PC--CQHSFCEKCIRLVLVE---------KARCPKCFSSKCR------LEDLLPN 191 (685)
Q Consensus 137 eLtCPIClelf~dPVtL--------pC--CGHSFC~~CI~~~lk~---------~~sCPvCR~~~~~------~~~L~pN 191 (685)
..+|..|..--.+..+. .| |.-.||..||...+.. ...||.||- +.. ...+.|.
T Consensus 7 g~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg-iCnCs~Crrk~g~~PT 85 (105)
T PF10497_consen 7 GKTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG-ICNCSFCRRKRGWAPT 85 (105)
T ss_pred CCCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC-eeCCHhhhccCCCCCc
Confidence 45666666644433321 11 2667999999877643 237999985 432 3445554
Q ss_pred HHHHH
Q 035975 192 VSLRQ 196 (685)
Q Consensus 192 ~~L~n 196 (685)
-.|..
T Consensus 86 g~l~~ 90 (105)
T PF10497_consen 86 GILYH 90 (105)
T ss_pred HHHHH
Confidence 44433
No 166
>KOG2375 consensus Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=24.23 E-value=2.8e+02 Score=34.22 Aligned_cols=16 Identities=13% Similarity=0.160 Sum_probs=7.1
Q ss_pred cCCCccccc-cccchhh
Q 035975 302 SAQPVDFKR-RPVDLDE 317 (685)
Q Consensus 302 ~qqs~~~~~-lisDle~ 317 (685)
.+|....++ .+++++.
T Consensus 435 t~~r~~~~~s~~s~~n~ 451 (756)
T KOG2375|consen 435 TVQRKGGIESEPSSVNK 451 (756)
T ss_pred cccccccccCCCccccc
Confidence 344444444 4555443
No 167
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=23.24 E-value=26 Score=38.41 Aligned_cols=44 Identities=18% Similarity=0.424 Sum_probs=32.1
Q ss_pred Ccccccccccccccceec---cCCC--CccchhHHHHHhhcCCCCCCCcC
Q 035975 136 SELKCSLCNTLFKEAVMI---PCCQ--HSFCEKCIRLVLVEKARCPKCFS 180 (685)
Q Consensus 136 eeLtCPIClelf~dPVtL---pCCG--HSFC~~CI~~~lk~~~sCPvCR~ 180 (685)
..-.||||...-.-.+.. .- | +.+|.-|-+.|--....||.|..
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~-G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQ-GLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCC-CceEEEcCCCCCcccccCccCCCCCC
Confidence 468899999976544321 12 3 34699999999887889999984
No 168
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=23.15 E-value=68 Score=32.38 Aligned_cols=47 Identities=15% Similarity=0.374 Sum_probs=31.7
Q ss_pred CCcccccccccccccceeccCC--CC--ccchhHHHHHhhcC--CCCCCCcCCC
Q 035975 135 PSELKCSLCNTLFKEAVMIPCC--QH--SFCEKCIRLVLVEK--ARCPKCFSSK 182 (685)
Q Consensus 135 eeeLtCPIClelf~dPVtLpCC--GH--SFC~~CI~~~lk~~--~sCPvCR~~~ 182 (685)
..+-.|-||.+--. +...||+ |- ..=..|+++|+..+ ..|+.|++.+
T Consensus 6 ~~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y 58 (162)
T PHA02825 6 LMDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPY 58 (162)
T ss_pred CCCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeE
Confidence 44678999988754 4456762 20 00267999999865 4799999743
No 169
>KOG3168 consensus U1 snRNP component [Transcription]
Probab=22.81 E-value=1.7e+02 Score=29.86 Aligned_cols=30 Identities=20% Similarity=0.159 Sum_probs=17.2
Q ss_pred CCCCCCCCCC-CCCCCcccccCCCCCccCCCC
Q 035975 397 APPFWNGPSL-AHVRPIANIYGNHGMMPFNAT 427 (685)
Q Consensus 397 ~~~~~~g~~~-~~~~~~~~~yg~~gmmpf~~~ 427 (685)
+|++-.|.+. .+++|++.+|.. |+.|-++|
T Consensus 127 Gp~rg~g~~a~~~~qp~g~g~p~-~~~p~g~~ 157 (177)
T KOG3168|consen 127 GPVRGVGGPAPQIMQPQGRGYPG-GNDPGGRP 157 (177)
T ss_pred CCccccCCCCccccCccccCCCC-CCCCCCCC
Confidence 5677666555 788888844332 34443344
No 170
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=22.79 E-value=78 Score=41.54 Aligned_cols=44 Identities=32% Similarity=0.663 Sum_probs=30.2
Q ss_pred cccccccccccc---cceeccCCCCccchhHHHHHhhcC----------CCCCCCcCC
Q 035975 137 ELKCSLCNTLFK---EAVMIPCCQHSFCEKCIRLVLVEK----------ARCPKCFSS 181 (685)
Q Consensus 137 eLtCPIClelf~---dPVtLpCCGHSFC~~CI~~~lk~~----------~sCPvCR~~ 181 (685)
+-.|-||+.--. ..+.|.| +|.|=..|....+.+. ..||+|..+
T Consensus 3486 DDmCmICFTE~L~AAP~IqL~C-~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~ 3542 (3738)
T KOG1428|consen 3486 DDMCMICFTEALSAAPAIQLDC-SHIFHLQCCRRVLENRWLGPRITFGFISCPICKNK 3542 (3738)
T ss_pred CceEEEEehhhhCCCcceecCC-ccchhHHHHHHHHHhcccCCeeEEeeeecccccch
Confidence 445777765321 3467787 9999888887776643 279999863
No 171
>PRK04023 DNA polymerase II large subunit; Validated
Probab=22.63 E-value=66 Score=40.47 Aligned_cols=61 Identities=21% Similarity=0.332 Sum_probs=34.8
Q ss_pred cccccccccccccceeccCCCC-----ccchhHHHHHhhcCCCCCCCcCCCccccCCCccHHHHHHHHHHH
Q 035975 137 ELKCSLCNTLFKEAVMIPCCQH-----SFCEKCIRLVLVEKARCPKCFSSKCRLEDLLPNVSLRQAIEHFL 202 (685)
Q Consensus 137 eLtCPIClelf~dPVtLpCCGH-----SFC~~CI~~~lk~~~sCPvCR~~~~~~~~L~pN~~L~nLVe~~r 202 (685)
...|+-|.........-.| |. .||..|-.. .....||.|....... -.....+..++....
T Consensus 626 ~RfCpsCG~~t~~frCP~C-G~~Te~i~fCP~CG~~--~~~y~CPKCG~El~~~--s~~~i~l~~~~~~A~ 691 (1121)
T PRK04023 626 RRKCPSCGKETFYRRCPFC-GTHTEPVYRCPRCGIE--VEEDECEKCGREPTPY--SKRKIDLKELYDRAL 691 (1121)
T ss_pred CccCCCCCCcCCcccCCCC-CCCCCcceeCccccCc--CCCCcCCCCCCCCCcc--ceEEecHHHHHHHHH
Confidence 4679999887643332234 74 499999432 2335799999754322 223333455544433
No 172
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]
Probab=22.04 E-value=3.4e+02 Score=33.46 Aligned_cols=22 Identities=23% Similarity=0.146 Sum_probs=15.6
Q ss_pred CCCCCCCCCCCcCCCccCCCCCCC
Q 035975 427 TMAPTTQFAVPAYMPSMFGGIPAY 450 (685)
Q Consensus 427 ~~~p~~~~~~p~ymp~~~~g~~~~ 450 (685)
|-.|+.+++ +|||+++--.+.+
T Consensus 250 pp~p~s~~a--qs~ps~qspt~~q 271 (1034)
T KOG0608|consen 250 PPYPMSPNA--QSSPSRQSPTPPQ 271 (1034)
T ss_pred CCCCCCccc--ccCcccCCCCCCC
Confidence 556666666 7888888666666
No 173
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.48 E-value=28 Score=36.60 Aligned_cols=42 Identities=24% Similarity=0.830 Sum_probs=33.3
Q ss_pred ccccccccccc------cceecc--------CCCCccchhHHHHHhhcC-CCCCCCcC
Q 035975 138 LKCSLCNTLFK------EAVMIP--------CCQHSFCEKCIRLVLVEK-ARCPKCFS 180 (685)
Q Consensus 138 LtCPIClelf~------dPVtLp--------CCGHSFC~~CI~~~lk~~-~sCPvCR~ 180 (685)
..|.||...+. .|.++. | ||+.|..|+...+... ..||.|+.
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c-~htlc~~c~~~~l~~~~~~cp~~~~ 264 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIE-GHTLCKECIDTILLQAGIKCPFCTW 264 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHH-HHHHHhcchHHHHHHhhhcCCcccc
Confidence 56899987775 366666 7 9999999999876654 58999985
No 174
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=20.19 E-value=71 Score=27.19 Aligned_cols=40 Identities=28% Similarity=0.754 Sum_probs=25.8
Q ss_pred cccccccccc----cceeccCCCCccchhHHHHHhhcCCCCCCCcCC
Q 035975 139 KCSLCNTLFK----EAVMIPCCQHSFCEKCIRLVLVEKARCPKCFSS 181 (685)
Q Consensus 139 tCPIClelf~----dPVtLpCCGHSFC~~CI~~~lk~~~sCPvCR~~ 181 (685)
.|-.|...|. ++.+-.= ..|||..|....+ ...||.|.-.
T Consensus 7 nCE~C~~dLp~~s~~A~ICSf-ECTFC~~C~e~~l--~~~CPNCgGe 50 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSF-ECTFCADCAETML--NGVCPNCGGE 50 (57)
T ss_pred CccccCCCCCCCCCcceEEeE-eCcccHHHHHHHh--cCcCcCCCCc
Confidence 4555655443 2333222 4599999999876 4689999853
No 175
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=20.01 E-value=70 Score=30.05 Aligned_cols=7 Identities=57% Similarity=1.336 Sum_probs=5.3
Q ss_pred CCCCCcC
Q 035975 174 RCPKCFS 180 (685)
Q Consensus 174 sCPvCR~ 180 (685)
.||.|..
T Consensus 28 vCP~CG~ 34 (108)
T PF09538_consen 28 VCPKCGT 34 (108)
T ss_pred cCCCCCC
Confidence 5888876
Done!