Query 035975
Match_columns 685
No_of_seqs 399 out of 2195
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 13:40:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035975.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035975hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ztg_A E3 ubiquitin-protein li 99.6 4E-15 1.4E-19 126.9 7.4 76 130-205 6-83 (92)
2 2kr4_A Ubiquitin conjugation f 99.5 3.8E-14 1.3E-18 121.4 6.4 73 131-205 8-80 (85)
3 1t1h_A Gspef-atpub14, armadill 99.5 2.5E-14 8.5E-19 118.6 5.0 72 132-205 3-75 (78)
4 1wgm_A Ubiquitin conjugation f 99.5 7.1E-14 2.4E-18 123.2 7.0 73 132-206 17-90 (98)
5 2kre_A Ubiquitin conjugation f 99.4 7.6E-14 2.6E-18 123.5 6.6 72 132-205 24-95 (100)
6 3fl2_A E3 ubiquitin-protein li 99.4 2.7E-13 9.2E-18 122.1 4.1 71 133-204 48-119 (124)
7 2c2l_A CHIP, carboxy terminus 99.4 8.9E-13 3.1E-17 130.7 7.9 73 131-205 202-275 (281)
8 2yu4_A E3 SUMO-protein ligase 99.3 5.8E-13 2E-17 115.8 5.7 72 134-206 4-84 (94)
9 2y43_A E3 ubiquitin-protein li 99.3 3.7E-13 1.2E-17 116.6 3.1 71 133-205 18-89 (99)
10 1z6u_A NP95-like ring finger p 99.3 1E-12 3.6E-17 123.5 5.2 71 133-204 74-145 (150)
11 2egp_A Tripartite motif-contai 99.3 1.1E-13 3.9E-18 114.2 -1.7 66 131-198 6-78 (79)
12 2ecw_A Tripartite motif-contai 99.3 3.7E-13 1.3E-17 111.6 0.9 67 130-198 12-84 (85)
13 2yur_A Retinoblastoma-binding 99.3 2E-12 6.7E-17 107.1 5.2 63 129-191 7-71 (74)
14 2f42_A STIP1 homology and U-bo 99.3 3.7E-12 1.3E-16 124.1 7.6 75 129-205 98-173 (179)
15 2ckl_A Polycomb group ring fin 99.3 1.7E-12 5.9E-17 114.2 4.3 70 133-203 11-84 (108)
16 3lrq_A E3 ubiquitin-protein li 99.3 9.5E-13 3.2E-17 115.1 2.5 71 133-205 18-90 (100)
17 2ecv_A Tripartite motif-contai 99.3 5.3E-13 1.8E-17 110.7 0.7 66 131-198 13-84 (85)
18 2csy_A Zinc finger protein 183 99.3 4.7E-12 1.6E-16 105.9 6.3 62 131-195 9-70 (81)
19 2ckl_B Ubiquitin ligase protei 99.2 2.6E-12 8.7E-17 121.0 3.7 72 132-204 49-122 (165)
20 1jm7_B BARD1, BRCA1-associated 99.2 2.1E-12 7.3E-17 115.5 3.0 69 133-205 18-87 (117)
21 3l11_A E3 ubiquitin-protein li 99.2 1.7E-12 5.8E-17 115.3 2.1 72 131-203 9-87 (115)
22 4ayc_A E3 ubiquitin-protein li 99.2 3.3E-12 1.1E-16 117.5 3.0 66 134-203 50-115 (138)
23 2djb_A Polycomb group ring fin 99.2 1.3E-11 4.4E-16 101.3 5.4 59 129-189 7-66 (72)
24 1jm7_A BRCA1, breast cancer ty 99.2 5.3E-12 1.8E-16 110.6 1.6 68 134-203 18-88 (112)
25 2ct2_A Tripartite motif protei 99.1 1.2E-11 4E-16 103.8 2.6 65 129-194 7-80 (88)
26 3hct_A TNF receptor-associated 99.1 1.9E-11 6.6E-16 109.4 4.1 68 131-200 12-80 (118)
27 2ecy_A TNF receptor-associated 99.1 4.4E-11 1.5E-15 96.3 5.5 51 131-182 9-60 (66)
28 2ysl_A Tripartite motif-contai 99.1 4.4E-11 1.5E-15 97.4 5.2 50 131-181 14-66 (73)
29 2ysj_A Tripartite motif-contai 99.1 4.4E-11 1.5E-15 95.4 4.8 48 130-178 13-63 (63)
30 1rmd_A RAG1; V(D)J recombinati 99.1 1.9E-11 6.6E-16 108.6 2.6 66 134-200 20-86 (116)
31 2d8t_A Dactylidin, ring finger 99.1 5.6E-11 1.9E-15 97.2 3.0 50 132-182 10-59 (71)
32 2ecj_A Tripartite motif-contai 99.0 1.4E-10 4.8E-15 90.3 4.4 48 130-178 8-58 (58)
33 2ea6_A Ring finger protein 4; 99.0 1.3E-10 4.4E-15 93.1 4.2 50 131-181 9-65 (69)
34 3ng2_A RNF4, snurf, ring finge 99.0 1.2E-10 4.1E-15 94.2 3.6 56 134-191 7-69 (71)
35 3knv_A TNF receptor-associated 99.0 5.2E-11 1.8E-15 111.0 1.5 67 132-199 26-101 (141)
36 3htk_C E3 SUMO-protein ligase 99.0 1.5E-10 5.2E-15 118.8 4.5 70 132-203 176-250 (267)
37 3hcs_A TNF receptor-associated 99.0 1.6E-10 5.5E-15 109.0 4.1 68 131-200 12-80 (170)
38 2ect_A Ring finger protein 126 98.9 6.2E-10 2.1E-14 92.0 4.6 53 130-183 8-63 (78)
39 1g25_A CDK-activating kinase a 98.9 6.5E-10 2.2E-14 89.2 4.2 54 136-191 2-61 (65)
40 2ep4_A Ring finger protein 24; 98.9 8.3E-10 2.8E-14 90.4 4.9 55 130-185 8-65 (74)
41 2xeu_A Ring finger protein 4; 98.9 3.4E-10 1.2E-14 89.3 2.4 52 136-189 2-60 (64)
42 1e4u_A Transcriptional repress 98.9 1.9E-09 6.7E-14 91.5 5.6 52 131-183 5-61 (78)
43 2ecn_A Ring finger protein 141 98.9 6.8E-10 2.3E-14 90.0 2.3 51 131-183 9-59 (70)
44 1bor_A Transcription factor PM 98.8 9.6E-10 3.3E-14 86.9 2.6 45 135-183 4-48 (56)
45 1iym_A EL5; ring-H2 finger, ub 98.8 2.3E-09 7.9E-14 82.9 4.2 47 134-181 2-52 (55)
46 2kiz_A E3 ubiquitin-protein li 98.8 3.7E-09 1.3E-13 85.4 4.9 50 132-182 9-61 (69)
47 1chc_A Equine herpes virus-1 r 98.8 2.5E-09 8.6E-14 86.0 3.6 47 135-182 3-50 (68)
48 4ap4_A E3 ubiquitin ligase RNF 98.8 2E-09 7E-14 95.6 3.2 47 135-182 5-58 (133)
49 2ecm_A Ring finger and CHY zin 98.8 3.6E-09 1.2E-13 81.6 3.7 45 136-181 4-52 (55)
50 1x4j_A Ring finger protein 38; 98.8 4.8E-09 1.7E-13 86.4 4.2 48 134-182 20-70 (75)
51 2l0b_A E3 ubiquitin-protein li 98.7 5.4E-09 1.8E-13 89.9 3.8 47 134-181 37-86 (91)
52 1v87_A Deltex protein 2; ring- 98.7 1.1E-08 3.8E-13 90.2 4.9 47 136-183 24-93 (114)
53 4ic3_A E3 ubiquitin-protein li 98.6 5.9E-09 2E-13 86.7 0.3 44 134-182 21-65 (74)
54 4ap4_A E3 ubiquitin ligase RNF 98.5 2E-08 6.7E-13 89.2 2.1 54 135-190 70-130 (133)
55 2ecg_A Baculoviral IAP repeat- 98.5 1.8E-08 6.3E-13 83.6 1.4 43 135-182 23-66 (75)
56 2bay_A PRE-mRNA splicing facto 98.5 3.8E-08 1.3E-12 80.0 2.6 53 137-191 3-56 (61)
57 2y1n_A E3 ubiquitin-protein li 98.4 6.6E-08 2.2E-12 104.1 3.5 49 134-183 329-378 (389)
58 1wim_A KIAA0161 protein; ring 98.4 4E-08 1.4E-12 84.6 1.1 45 136-181 4-61 (94)
59 2ecl_A Ring-box protein 2; RNF 98.4 1.7E-07 5.7E-12 79.2 3.8 45 136-181 14-73 (81)
60 2vje_A E3 ubiquitin-protein li 98.3 1.4E-07 4.8E-12 76.7 2.2 46 136-182 7-55 (64)
61 2ea5_A Cell growth regulator w 98.3 4.9E-07 1.7E-11 74.5 4.9 45 134-183 12-57 (68)
62 2yho_A E3 ubiquitin-protein li 98.3 6E-08 2E-12 82.1 -1.0 45 134-183 15-60 (79)
63 2vje_B MDM4 protein; proto-onc 98.3 2.5E-07 8.5E-12 74.9 2.2 45 137-182 7-54 (63)
64 3dpl_R Ring-box protein 1; ubi 98.2 1E-06 3.6E-11 78.9 4.1 44 137-181 37-98 (106)
65 3t6p_A Baculoviral IAP repeat- 98.2 2.6E-07 8.8E-12 97.9 0.1 45 133-182 291-336 (345)
66 2d8s_A Cellular modulator of i 97.8 1.5E-05 5.2E-10 67.9 5.1 54 135-189 13-75 (80)
67 4a0k_B E3 ubiquitin-protein li 97.7 4.3E-06 1.5E-10 76.4 0.0 44 137-181 48-109 (117)
68 1dsq_A Nucleic acid binding pr 97.2 0.00013 4.5E-09 50.2 1.6 21 361-381 1-21 (26)
69 3m62_A Ubiquitin conjugation f 97.1 0.00038 1.3E-08 82.2 6.3 74 131-206 885-959 (968)
70 2ysa_A Retinoblastoma-binding 96.7 0.0013 4.3E-08 53.2 4.3 22 361-382 6-27 (55)
71 2jun_A Midline-1; B-BOX, TRIM, 96.5 0.0016 5.6E-08 56.2 3.7 82 136-238 2-87 (101)
72 2ct0_A Non-SMC element 1 homol 95.8 0.0058 2E-07 51.7 3.6 45 137-181 15-61 (74)
73 3nyb_B Protein AIR2; polya RNA 95.4 0.0087 3E-07 51.8 3.4 22 361-382 45-66 (83)
74 3vk6_A E3 ubiquitin-protein li 95.4 0.0079 2.7E-07 54.1 3.1 47 139-186 3-51 (101)
75 1vyx_A ORF K3, K3RING; zinc-bi 95.0 0.022 7.5E-07 46.0 4.4 47 135-181 4-56 (60)
76 1nc8_A Nucleocapsid protein; H 94.9 0.01 3.5E-07 41.6 1.8 21 360-380 4-24 (29)
77 1u6p_A GAG polyprotein; MLV, A 94.4 0.017 5.8E-07 46.8 2.1 25 358-382 19-43 (56)
78 2a51_A Nucleocapsid protein; s 94.3 0.015 5.2E-07 43.0 1.7 19 362-380 21-39 (39)
79 1a6b_B Momulv, zinc finger pro 94.1 0.023 7.8E-07 43.1 2.3 22 362-383 10-31 (40)
80 2lli_A Protein AIR2; RNA surve 94.1 0.02 6.8E-07 51.8 2.3 23 359-381 102-124 (124)
81 1cl4_A Protein (GAG polyprotei 94.1 0.022 7.5E-07 45.6 2.3 22 362-383 30-51 (60)
82 3k1l_B Fancl; UBC, ring, RWD, 94.1 0.016 5.6E-07 62.1 1.9 47 135-182 306-371 (381)
83 2li8_A Protein LIN-28 homolog 93.6 0.028 9.7E-07 47.5 2.2 19 362-380 24-42 (74)
84 2bl6_A Nucleocapsid protein P1 93.6 0.027 9.1E-07 41.2 1.7 19 362-380 19-37 (37)
85 3nyb_B Protein AIR2; polya RNA 93.4 0.022 7.5E-07 49.3 1.2 21 361-381 4-24 (83)
86 2ihx_A Nucleocapsid (NC) prote 93.3 0.03 1E-06 45.3 1.8 22 360-381 2-23 (61)
87 1a1t_A Nucleocapsid protein; s 93.3 0.031 1.1E-06 44.0 1.8 19 362-380 33-51 (55)
88 2bl6_A Nucleocapsid protein P1 93.3 0.031 1.1E-06 40.9 1.7 18 364-381 2-19 (37)
89 2ec7_A GAG polyprotein (PR55GA 93.1 0.033 1.1E-06 43.2 1.7 20 361-380 5-24 (49)
90 1cl4_A Protein (GAG polyprotei 93.1 0.017 5.9E-07 46.3 0.0 21 362-382 1-21 (60)
91 2ec7_A GAG polyprotein (PR55GA 93.0 0.037 1.3E-06 42.9 1.8 20 362-381 27-46 (49)
92 1a1t_A Nucleocapsid protein; s 92.4 0.047 1.6E-06 43.0 1.7 22 360-381 10-31 (55)
93 3ts2_A Protein LIN-28 homolog 92.3 0.051 1.7E-06 51.2 2.2 20 362-381 119-138 (148)
94 2ihx_A Nucleocapsid (NC) prote 92.3 0.046 1.6E-06 44.2 1.6 21 362-382 30-50 (61)
95 2a51_A Nucleocapsid protein; s 91.9 0.054 1.8E-06 40.0 1.4 18 364-381 2-19 (39)
96 2cqf_A RNA-binding protein LIN 91.8 0.056 1.9E-06 44.1 1.6 21 362-382 29-49 (63)
97 2li8_A Protein LIN-28 homolog 90.3 0.11 3.9E-06 43.8 2.1 26 361-386 45-70 (74)
98 2cqf_A RNA-binding protein LIN 89.8 0.12 4E-06 42.1 1.7 20 362-381 7-26 (63)
99 3ts2_A Protein LIN-28 homolog 88.6 0.18 6.1E-06 47.5 2.2 20 362-381 97-116 (148)
100 2lli_A Protein AIR2; RNA surve 84.7 0.34 1.2E-05 43.7 1.8 20 362-381 64-83 (124)
101 3i2d_A E3 SUMO-protein ligase 82.7 1.1 3.6E-05 48.4 4.8 65 136-201 248-316 (371)
102 2ko5_A Ring finger protein Z; 82.4 0.61 2.1E-05 41.6 2.4 46 134-181 25-70 (99)
103 3nw0_A Non-structural maintena 81.0 0.99 3.4E-05 45.5 3.7 45 137-181 180-226 (238)
104 4fo9_A E3 SUMO-protein ligase 80.1 1.5 5.1E-05 47.1 4.8 66 134-200 212-281 (360)
105 4gyx_A Type III collagen fragm 75.2 2.6 8.7E-05 29.8 3.2 16 416-433 9-24 (31)
106 2cs3_A Protein C14ORF4, MY039 53.9 16 0.00053 32.0 4.7 37 135-171 13-52 (93)
107 3mjh_B Early endosome antigen 38.7 4.3 0.00015 29.9 -1.0 18 136-153 4-21 (34)
108 3pgw_B SM B; protein-RNA compl 37.1 55 0.0019 33.2 6.4 22 382-403 174-196 (231)
109 1m3v_A FLIN4, fusion of the LI 36.8 21 0.00071 31.6 3.0 46 137-183 32-80 (122)
110 1rut_X Flinc4, fusion protein 27.2 20 0.00068 34.0 1.2 46 136-182 31-79 (188)
111 2xjy_A Rhombotin-2; oncoprotei 25.8 29 0.001 30.5 2.0 46 136-182 28-76 (131)
112 2fiy_A Protein FDHE homolog; F 25.3 9.7 0.00033 39.9 -1.4 45 135-180 180-230 (309)
113 2xqn_T Testin, TESS; metal-bin 23.6 45 0.0015 29.1 2.8 44 136-182 29-73 (126)
114 2ysa_A Retinoblastoma-binding 22.7 41 0.0014 26.9 2.1 20 65-84 35-54 (55)
115 2jmo_A Parkin; IBR, E3 ligase, 22.0 15 0.0005 30.9 -0.7 34 137-170 25-70 (80)
116 1k81_A EIF-2-beta, probable tr 21.4 24 0.00082 25.9 0.4 10 364-373 2-11 (36)
No 1
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.56 E-value=4e-15 Score=126.90 Aligned_cols=76 Identities=38% Similarity=0.908 Sum_probs=66.7
Q ss_pred ccCCCCCcccccccccccccceeccCCCCccchhHHHHHhhcC--CCCCCCcCCCccccCCCccHHHHHHHHHHHhhc
Q 035975 130 ENGNFPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEK--ARCPKCFSSKCRLEDLLPNVSLRQAIEHFLESQ 205 (685)
Q Consensus 130 ~~e~LeeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~~--~sCPvCR~~~~~~~~L~pN~~L~nLVe~~redq 205 (685)
..+.+.++++|+||+++|.+|++++||||+||..||..|+... ..||+||..+.....+.+|..|.++|+.++...
T Consensus 6 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~ 83 (92)
T 3ztg_A 6 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNET 83 (92)
T ss_dssp SCCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHH
T ss_pred ccccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHH
Confidence 3467888999999999999999999459999999999999754 589999986556789999999999999998754
No 2
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.47 E-value=3.8e-14 Score=121.42 Aligned_cols=73 Identities=19% Similarity=0.255 Sum_probs=65.7
Q ss_pred cCCCCCcccccccccccccceeccCCCCccchhHHHHHhhcCCCCCCCcCCCccccCCCccHHHHHHHHHHHhhc
Q 035975 131 NGNFPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKARCPKCFSSKCRLEDLLPNVSLRQAIEHFLESQ 205 (685)
Q Consensus 131 ~e~LeeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~~~sCPvCR~~~~~~~~L~pN~~L~nLVe~~redq 205 (685)
...+.++|.||||+++|.+||+++| ||+||+.||..|+....+||+|+. ......|.+|..|+++|+.++..+
T Consensus 8 ~~~~p~~~~CpI~~~~m~dPV~~~c-Ghtf~r~~I~~~l~~~~~cP~~~~-~l~~~~l~pn~~L~~~i~~~~~~~ 80 (85)
T 2kr4_A 8 YSDAPDEFRDPLMDTLMTDPVRLPS-GTVMDRSIILRHLLNSPTDPFNRQ-MLTESMLEPVPELKEQIQAWMREK 80 (85)
T ss_dssp CTTCCTTTBCTTTCSBCSSEEECTT-SCEEEHHHHHHHHHHCSBCTTTCC-BCCGGGCEECHHHHHHHHHHHHHH
T ss_pred hhcCchheECcccCchhcCCeECCC-CCEECHHHHHHHHhcCCCCCCCcC-CCChHhcchHHHHHHHHHHHHHHh
Confidence 3567889999999999999999997 999999999999998889999997 456679999999999999997654
No 3
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.47 E-value=2.5e-14 Score=118.56 Aligned_cols=72 Identities=25% Similarity=0.454 Sum_probs=64.2
Q ss_pred CCCCCcccccccccccccceeccCCCCccchhHHHHHhhc-CCCCCCCcCCCccccCCCccHHHHHHHHHHHhhc
Q 035975 132 GNFPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVE-KARCPKCFSSKCRLEDLLPNVSLRQAIEHFLESQ 205 (685)
Q Consensus 132 e~LeeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~-~~sCPvCR~~~~~~~~L~pN~~L~nLVe~~redq 205 (685)
..+.+++.|+||+++|.+|++++| ||+||..||..|+.. ...||+|+. ......+.+|..|.++|+.++...
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~~~C-gH~fc~~Ci~~~~~~~~~~CP~C~~-~~~~~~l~~n~~l~~~i~~~~~~~ 75 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVIVST-GQTYERSSIQKWLDAGHKTCPKSQE-TLLHAGLTPNYVLKSLIALWCESN 75 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEETT-TEEEEHHHHHHHHTTTCCBCTTTCC-BCSSCCCEECTTTHHHHHHHHHHS
T ss_pred cCCcccCCCCCccccccCCEEcCC-CCeecHHHHHHHHHHCcCCCCCCcC-CCChhhCccCHHHHHHHHHHHHHc
Confidence 457889999999999999999997 999999999999986 578999997 455678999999999999998754
No 4
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.45 E-value=7.1e-14 Score=123.23 Aligned_cols=73 Identities=19% Similarity=0.290 Sum_probs=65.9
Q ss_pred CCCCCcccccccccccccceeccCCC-CccchhHHHHHhhcCCCCCCCcCCCccccCCCccHHHHHHHHHHHhhcc
Q 035975 132 GNFPSELKCSLCNTLFKEAVMIPCCQ-HSFCEKCIRLVLVEKARCPKCFSSKCRLEDLLPNVSLRQAIEHFLESQI 206 (685)
Q Consensus 132 e~LeeeLtCPIClelf~dPVtLpCCG-HSFC~~CI~~~lk~~~sCPvCR~~~~~~~~L~pN~~L~nLVe~~redq~ 206 (685)
..++++|.||||+++|.+||+++| | |+||+.||..||.....||+|+. .+....|.+|..|+++|+.++..+.
T Consensus 17 ~~~p~~~~CpI~~~~m~dPV~~~c-G~htf~r~cI~~~l~~~~~cP~~~~-~l~~~~L~pn~~Lk~~I~~~~~~~~ 90 (98)
T 1wgm_A 17 ADACDEFLDPIMSTLMCDPVVLPS-SRVTVDRSTIARHLLSDQTDPFNRS-PLTMDQIRPNTELKEKIQRWLAERK 90 (98)
T ss_dssp CSCCTTTBCTTTCSBCSSEEECTT-TCCEEEHHHHHHHTTTSCBCTTTCS-BCCTTTSEECHHHHHHHHHHHHHST
T ss_pred hcCcHhcCCcCccccccCCeECCC-CCeEECHHHHHHHHHhCCCCCCCCC-CCChhhceEcHHHHHHHHHHHHHcc
Confidence 567889999999999999999998 8 99999999999988889999997 4556799999999999999987653
No 5
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.45 E-value=7.6e-14 Score=123.47 Aligned_cols=72 Identities=19% Similarity=0.268 Sum_probs=65.5
Q ss_pred CCCCCcccccccccccccceeccCCCCccchhHHHHHhhcCCCCCCCcCCCccccCCCccHHHHHHHHHHHhhc
Q 035975 132 GNFPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKARCPKCFSSKCRLEDLLPNVSLRQAIEHFLESQ 205 (685)
Q Consensus 132 e~LeeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~~~sCPvCR~~~~~~~~L~pN~~L~nLVe~~redq 205 (685)
..++++|.||||+++|.+||+++| ||+||+.||..||....+||.|+. ......|.+|..|+++|+.++..+
T Consensus 24 ~~~p~~~~CpI~~~~m~dPV~~~c-Ghtf~r~~I~~~l~~~~~cP~~~~-~l~~~~L~pn~~Lk~~I~~~~~~~ 95 (100)
T 2kre_A 24 SDAPDEFRDPLMDTLMTDPVRLPS-GTIMDRSIILRHLLNSPTDPFNRQ-TLTESMLEPVPELKEQIQAWMREK 95 (100)
T ss_dssp SSCSTTTBCTTTCSBCSSEEEETT-TEEEEHHHHHHHTTSCSBCSSSCC-BCCTTSSEECHHHHHHHHHHHHTT
T ss_pred ccCcHhhCCcCccCcccCCeECCC-CCEEchHHHHHHHHcCCCCCCCCC-CCChhhceECHHHHHHHHHHHHHh
Confidence 467889999999999999999997 999999999999998789999997 455689999999999999998754
No 6
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.36 E-value=2.7e-13 Score=122.11 Aligned_cols=71 Identities=20% Similarity=0.506 Sum_probs=61.9
Q ss_pred CCCCcccccccccccccceeccCCCCccchhHHHHHhhcC-CCCCCCcCCCccccCCCccHHHHHHHHHHHhh
Q 035975 133 NFPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEK-ARCPKCFSSKCRLEDLLPNVSLRQAIEHFLES 204 (685)
Q Consensus 133 ~LeeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~~-~sCPvCR~~~~~~~~L~pN~~L~nLVe~~red 204 (685)
.+.++++|+||+++|.+|++++| ||+||..||..|+... ..||+||..+.....+.+|..|.++++.+...
T Consensus 48 ~~~~~~~C~IC~~~~~~p~~~~C-gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~ 119 (124)
T 3fl2_A 48 KVEETFQCICCQELVFRPITTVC-QHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPG 119 (124)
T ss_dssp HHHHHTBCTTTSSBCSSEEECTT-SCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTT
T ss_pred hCccCCCCCcCChHHcCcEEeeC-CCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHccc
Confidence 35668999999999999999998 9999999999999854 48999998655557899999999999988653
No 7
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.35 E-value=8.9e-13 Score=130.65 Aligned_cols=73 Identities=22% Similarity=0.344 Sum_probs=64.3
Q ss_pred cCCCCCcccccccccccccceeccCCCCccchhHHHHHhhcC-CCCCCCcCCCccccCCCccHHHHHHHHHHHhhc
Q 035975 131 NGNFPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEK-ARCPKCFSSKCRLEDLLPNVSLRQAIEHFLESQ 205 (685)
Q Consensus 131 ~e~LeeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~~-~sCPvCR~~~~~~~~L~pN~~L~nLVe~~redq 205 (685)
...+.+.+.||||+++|.+||+++| ||+||+.||..|+... ..||+|+. ......|.+|..|.++|+.|....
T Consensus 202 ~~~~~~~~~c~i~~~~~~dPv~~~~-gh~f~~~~i~~~~~~~~~~cP~~~~-~~~~~~l~~n~~l~~~i~~~~~~~ 275 (281)
T 2c2l_A 202 KRDIPDYLCGKISFELMREPCITPS-GITYDRKDIEEHLQRVGHFNPVTRS-PLTQEQLIPNLAMKEVIDAFISEN 275 (281)
T ss_dssp CCCCCSTTBCTTTCSBCSSEEECSS-CCEEETTHHHHHHHHTCSSCTTTCC-CCCGGGCEECHHHHHHHHHHHTTC
T ss_pred CCCCCcccCCcCcCCHhcCCeECCC-CCEECHHHHHHHHHHCCCCCcCCCC-CCchhcCcccHHHHHHHHHHHHHC
Confidence 3467789999999999999999997 9999999999999864 45999997 456778999999999999998754
No 8
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=5.8e-13 Score=115.79 Aligned_cols=72 Identities=28% Similarity=0.513 Sum_probs=62.8
Q ss_pred CCCcccccccccccccceecc-CCCCccchhHHHHHhhcC------CCCCC--CcCCCccccCCCccHHHHHHHHHHHhh
Q 035975 134 FPSELKCSLCNTLFKEAVMIP-CCQHSFCEKCIRLVLVEK------ARCPK--CFSSKCRLEDLLPNVSLRQAIEHFLES 204 (685)
Q Consensus 134 LeeeLtCPIClelf~dPVtLp-CCGHSFC~~CI~~~lk~~------~sCPv--CR~~~~~~~~L~pN~~L~nLVe~~red 204 (685)
..++|.||||+++|.+||+++ | ||+||+.||..||... ..||+ |+.......+|.+|..|.++|+.++..
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~c-Gh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~ 82 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVC-GHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKK 82 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSS-CCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTT
T ss_pred CCcEeECcCcCchhcCCEEcCCC-CCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHH
Confidence 567899999999999999996 7 9999999999999863 58999 986336678999999999999999875
Q ss_pred cc
Q 035975 205 QI 206 (685)
Q Consensus 205 q~ 206 (685)
..
T Consensus 83 ~~ 84 (94)
T 2yu4_A 83 RH 84 (94)
T ss_dssp CC
T ss_pred hc
Confidence 43
No 9
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.33 E-value=3.7e-13 Score=116.63 Aligned_cols=71 Identities=30% Similarity=0.648 Sum_probs=62.6
Q ss_pred CCCCcccccccccccccceec-cCCCCccchhHHHHHhhcCCCCCCCcCCCccccCCCccHHHHHHHHHHHhhc
Q 035975 133 NFPSELKCSLCNTLFKEAVMI-PCCQHSFCEKCIRLVLVEKARCPKCFSSKCRLEDLLPNVSLRQAIEHFLESQ 205 (685)
Q Consensus 133 ~LeeeLtCPIClelf~dPVtL-pCCGHSFC~~CI~~~lk~~~sCPvCR~~~~~~~~L~pN~~L~nLVe~~redq 205 (685)
.+.+.+.|+||++.|.+|+++ +| ||+||..||..|+.....||+||. ......+.+|..|.++++.++...
T Consensus 18 ~~~~~~~C~IC~~~~~~p~~~~~C-gH~fC~~Ci~~~~~~~~~CP~Cr~-~~~~~~l~~n~~l~~~i~~~~~~~ 89 (99)
T 2y43_A 18 TIDDLLRCGICFEYFNIAMIIPQC-SHNYCSLCIRKFLSYKTQCPTCCV-TVTEPDLKNNRILDELVKSLNFAR 89 (99)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTT-CCEEEHHHHHHHHTTCCBCTTTCC-BCCGGGCEECHHHHHHHHHHHHHH
T ss_pred hCCCCCCcccCChhhCCcCEECCC-CCHhhHHHHHHHHHCCCCCCCCCC-cCChhhCCcCHHHHHHHHHHHHHH
Confidence 345689999999999999998 66 999999999999998889999997 455678999999999999998754
No 10
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.31 E-value=1e-12 Score=123.49 Aligned_cols=71 Identities=21% Similarity=0.547 Sum_probs=61.5
Q ss_pred CCCCcccccccccccccceeccCCCCccchhHHHHHhhcC-CCCCCCcCCCccccCCCccHHHHHHHHHHHhh
Q 035975 133 NFPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEK-ARCPKCFSSKCRLEDLLPNVSLRQAIEHFLES 204 (685)
Q Consensus 133 ~LeeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~~-~sCPvCR~~~~~~~~L~pN~~L~nLVe~~red 204 (685)
.+.+.+.|+||+++|.+|++|+| ||+||..||..|+... ..||+||..+.....+.+|..|.++|+.++..
T Consensus 74 ~l~~~~~C~IC~~~~~~pv~~~C-gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p~ 145 (150)
T 1z6u_A 74 KLEQSFMCVCCQELVYQPVTTEC-FHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFPG 145 (150)
T ss_dssp HHHHHTBCTTTSSBCSSEEECTT-SCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHSTT
T ss_pred hCccCCEeecCChhhcCCEEcCC-CCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhhH
Confidence 35668999999999999999998 9999999999999865 48999998554444899999999999988653
No 11
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.30 E-value=1.1e-13 Score=114.15 Aligned_cols=66 Identities=35% Similarity=0.729 Sum_probs=55.5
Q ss_pred cCCCCCcccccccccccccceeccCCCCccchhHHHHHhhc-------CCCCCCCcCCCccccCCCccHHHHHHH
Q 035975 131 NGNFPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVE-------KARCPKCFSSKCRLEDLLPNVSLRQAI 198 (685)
Q Consensus 131 ~e~LeeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~-------~~sCPvCR~~~~~~~~L~pN~~L~nLV 198 (685)
.+.+.+++.|+||++.|.+|++++| ||+||..||..|+.. ...||+||.. .....+.+|..|.++|
T Consensus 6 ~~~~~~~~~C~IC~~~~~~p~~l~C-gH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~-~~~~~l~~n~~l~~lv 78 (79)
T 2egp_A 6 SGNVQEEVTCPICLELLTEPLSLDC-GHSLCRACITVSNKEAVTSMGGKSSCPVCGIS-YSFEHLQANQHLANIV 78 (79)
T ss_dssp SCCCCCCCEETTTTEECSSCCCCSS-SCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCC-CCSSGGGTCSSSCCCC
T ss_pred HhhcccCCCCcCCCcccCCeeECCC-CCHHHHHHHHHHHHhcccCCCCCCcCCCCCCc-CCHhhCCcCHHHHHhh
Confidence 4668889999999999999999998 999999999999876 4689999974 5556788887665543
No 12
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.29 E-value=3.7e-13 Score=111.60 Aligned_cols=67 Identities=33% Similarity=0.689 Sum_probs=56.3
Q ss_pred ccCCCCCcccccccccccccceeccCCCCccchhHHHHHhhc------CCCCCCCcCCCccccCCCccHHHHHHH
Q 035975 130 ENGNFPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVE------KARCPKCFSSKCRLEDLLPNVSLRQAI 198 (685)
Q Consensus 130 ~~e~LeeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~------~~sCPvCR~~~~~~~~L~pN~~L~nLV 198 (685)
..+.+.+.+.|+||++.|.+|++++| ||+||..||..|+.. ...||.||. ......+.+|..|.++|
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p~~~~C-gH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~-~~~~~~~~~n~~l~~~v 84 (85)
T 2ecw_A 12 VLEMIKEEVTCPICLELLKEPVSADC-NHSFCRACITLNYESNRNTDGKGNCPVCRV-PYPFGNLKPNLHVANIV 84 (85)
T ss_dssp CCCCCCTTTSCTTTCSCCSSCEECTT-SCCBCHHHHHHHHHHSBCTTSCBCCTTTCC-CCCTTCCEECSCCCSSC
T ss_pred HHHhCccCCCCcCCChhhCcceeCCC-CCHHHHHHHHHHHHhccCCCCCCCCCCCCC-cCCHHhCCcCHHHHHhh
Confidence 34667889999999999999999997 999999999999987 568999997 45566788887665543
No 13
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.29 E-value=2e-12 Score=107.05 Aligned_cols=63 Identities=37% Similarity=0.908 Sum_probs=52.1
Q ss_pred cccCCCCCcccccccccccccceeccCCCCccchhHHHHHhhcC--CCCCCCcCCCccccCCCcc
Q 035975 129 MENGNFPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEK--ARCPKCFSSKCRLEDLLPN 191 (685)
Q Consensus 129 ~~~e~LeeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~~--~sCPvCR~~~~~~~~L~pN 191 (685)
...+.+.+++.|+||+++|.+|+++++|||+||..||..|+... ..||+||+.+...+.+.+|
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n 71 (74)
T 2yur_A 7 GEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP 71 (74)
T ss_dssp SCCCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred cccccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence 34567888999999999999999999449999999999999865 6899999865555555544
No 14
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.28 E-value=3.7e-12 Score=124.08 Aligned_cols=75 Identities=20% Similarity=0.323 Sum_probs=66.0
Q ss_pred cccCCCCCcccccccccccccceeccCCCCccchhHHHHHhhcC-CCCCCCcCCCccccCCCccHHHHHHHHHHHhhc
Q 035975 129 MENGNFPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEK-ARCPKCFSSKCRLEDLLPNVSLRQAIEHFLESQ 205 (685)
Q Consensus 129 ~~~e~LeeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~~-~sCPvCR~~~~~~~~L~pN~~L~nLVe~~redq 205 (685)
.....++++|.||||+++|.+||+++| ||+||+.||..|+... .+||+|+. .+....|.+|..|.++|+.+....
T Consensus 98 ~~~~~ip~~f~CPI~~elm~DPV~~~~-Ghtfer~~I~~~l~~~~~tcP~t~~-~l~~~~L~pN~~Lk~~Ie~~~~~~ 173 (179)
T 2f42_A 98 RKKREIPDYLCGKISFELMREPCITPS-GITYDRKDIEEHLQRVGHFDPVTRS-PLTQDQLIPNLAMKEVIDAFIQEN 173 (179)
T ss_dssp GGCCCCCGGGBCTTTCSBCSSEEECTT-SCEEEHHHHHHHHHHTCSBCTTTCC-BCCGGGCEECHHHHHHHHHHHHHC
T ss_pred ccccCCcHhhcccCccccCCCCeECCC-CCEECHHHHHHHHHhCCCCCCCCcC-CCChhhCcchHHHHHHHHHHHHHC
Confidence 335678899999999999999999997 9999999999999864 46999997 456679999999999999998754
No 15
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.27 E-value=1.7e-12 Score=114.24 Aligned_cols=70 Identities=27% Similarity=0.598 Sum_probs=60.7
Q ss_pred CCCCcccccccccccccceec-cCCCCccchhHHHHHhhcCCCCCCCcCCCccc---cCCCccHHHHHHHHHHHh
Q 035975 133 NFPSELKCSLCNTLFKEAVMI-PCCQHSFCEKCIRLVLVEKARCPKCFSSKCRL---EDLLPNVSLRQAIEHFLE 203 (685)
Q Consensus 133 ~LeeeLtCPIClelf~dPVtL-pCCGHSFC~~CI~~~lk~~~sCPvCR~~~~~~---~~L~pN~~L~nLVe~~re 203 (685)
.+.+++.|+||+++|.+|+++ +| ||+||..||..|+.....||+|+..+... ..+.+|..|.++++.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~C-gH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~ 84 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFIDATTIIEC-LHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVP 84 (108)
T ss_dssp HHGGGTBCTTTSSBCSSEEEETTT-CCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHST
T ss_pred ccCCcCCCccCChHHhCcCEeCCC-CChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHHHHHHHHHhh
Confidence 457789999999999999998 77 99999999999999888999999854432 278899999999998765
No 16
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.27 E-value=9.5e-13 Score=115.13 Aligned_cols=71 Identities=24% Similarity=0.524 Sum_probs=62.1
Q ss_pred CCCCccccccccccccccee-ccCCCCccchhHHHHHhhcC-CCCCCCcCCCccccCCCccHHHHHHHHHHHhhc
Q 035975 133 NFPSELKCSLCNTLFKEAVM-IPCCQHSFCEKCIRLVLVEK-ARCPKCFSSKCRLEDLLPNVSLRQAIEHFLESQ 205 (685)
Q Consensus 133 ~LeeeLtCPIClelf~dPVt-LpCCGHSFC~~CI~~~lk~~-~sCPvCR~~~~~~~~L~pN~~L~nLVe~~redq 205 (685)
.+.+++.|+||+++|.+|++ ++| ||+||..||..|+... ..||+||. .+....+..|..+.++++.+..-+
T Consensus 18 ~l~~~~~C~IC~~~~~~p~~~~~C-gH~FC~~Ci~~~~~~~~~~CP~Cr~-~~~~~~l~~~~~~~~i~~~~~~l~ 90 (100)
T 3lrq_A 18 SIAEVFRCFICMEKLRDARLCPHC-SKLCCFSCIRRWLTEQRAQCPHCRA-PLQLRELVNCRWAEEVTQQLDTLQ 90 (100)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTT-CCEEEHHHHHHHHHHTCSBCTTTCC-BCCGGGCEECTTHHHHHHHHHHHC
T ss_pred cCCCCCCCccCCccccCccccCCC-CChhhHHHHHHHHHHCcCCCCCCCC-cCCHHHhHhhHHHHHHHHHHHHHH
Confidence 46778999999999999999 887 9999999999999987 69999997 456788999999999888876643
No 17
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=5.3e-13 Score=110.68 Aligned_cols=66 Identities=26% Similarity=0.646 Sum_probs=55.9
Q ss_pred cCCCCCcccccccccccccceeccCCCCccchhHHHHHhhc------CCCCCCCcCCCccccCCCccHHHHHHH
Q 035975 131 NGNFPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVE------KARCPKCFSSKCRLEDLLPNVSLRQAI 198 (685)
Q Consensus 131 ~e~LeeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~------~~sCPvCR~~~~~~~~L~pN~~L~nLV 198 (685)
...+.+.+.|+||++.|.+|++++| ||+||..||..|+.. ...||.||. ......+.+|..|.++|
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~~C-gH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~-~~~~~~~~~n~~l~~~v 84 (85)
T 2ecv_A 13 LVNVKEEVTCPICLELLTQPLSLDC-GHSFCQACLTANHKKSMLDKGESSCPVCRI-SYQPENIRPNRHVANIV 84 (85)
T ss_dssp CCCCCCCCCCTTTCSCCSSCBCCSS-SCCBCTTHHHHHHHHHHHTTSCCCCTTTCC-SSCSSSCCCSCCCCCCC
T ss_pred HHHccCCCCCCCCCcccCCceeCCC-CCHHHHHHHHHHHHHhhcCCCCCcCCCCCC-ccCHHhcCccHHHHHhh
Confidence 4667889999999999999999998 999999999999987 578999997 45567788887665543
No 18
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=4.7e-12 Score=105.91 Aligned_cols=62 Identities=24% Similarity=0.523 Sum_probs=52.8
Q ss_pred cCCCCCcccccccccccccceeccCCCCccchhHHHHHhhcCCCCCCCcCCCccccCCCccHHHH
Q 035975 131 NGNFPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKARCPKCFSSKCRLEDLLPNVSLR 195 (685)
Q Consensus 131 ~e~LeeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~~~sCPvCR~~~~~~~~L~pN~~L~ 195 (685)
.++..+.+.|+||++.|.+|++++| ||+||..||..|+.....||+||..+. ..+.+|..|.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~C-gH~fC~~Ci~~~~~~~~~CP~Cr~~~~--~~~~~~~~l~ 70 (81)
T 2csy_A 9 SEEEEIPFRCFICRQAFQNPVVTKC-RHYFCESCALEHFRATPRCYICDQPTG--GIFNPAKELM 70 (81)
T ss_dssp SSCCCCCSBCSSSCSBCCSEEECTT-SCEEEHHHHHHHHHHCSBCSSSCCBCC--SCCEECHHHH
T ss_pred cccCCCCCCCcCCCchhcCeeEccC-CCHhHHHHHHHHHHCCCcCCCcCcccc--ccCCcHHHHH
Confidence 3556778999999999999999998 999999999999988889999997542 6677775443
No 19
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.24 E-value=2.6e-12 Score=120.98 Aligned_cols=72 Identities=28% Similarity=0.621 Sum_probs=61.9
Q ss_pred CCCCCcccccccccccccceec-cCCCCccchhHHHHHhhc-CCCCCCCcCCCccccCCCccHHHHHHHHHHHhh
Q 035975 132 GNFPSELKCSLCNTLFKEAVMI-PCCQHSFCEKCIRLVLVE-KARCPKCFSSKCRLEDLLPNVSLRQAIEHFLES 204 (685)
Q Consensus 132 e~LeeeLtCPIClelf~dPVtL-pCCGHSFC~~CI~~~lk~-~~sCPvCR~~~~~~~~L~pN~~L~nLVe~~red 204 (685)
..+.+.+.|+||+++|.+|+++ +| ||+||..||..|+.. ...||+||..+.....+.+|..|.++|+.+...
T Consensus 49 ~~~~~~~~C~IC~~~~~~p~~~~~C-gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~~ 122 (165)
T 2ckl_B 49 RSLHSELMCPICLDMLKNTMTTKEC-LHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPS 122 (165)
T ss_dssp -CCHHHHBCTTTSSBCSSEEEETTT-CCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC--
T ss_pred hhCCCCCCCcccChHhhCcCEeCCC-CChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHcc
Confidence 4566789999999999999998 76 999999999999987 578999998766678899999999999988653
No 20
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.24 E-value=2.1e-12 Score=115.49 Aligned_cols=69 Identities=28% Similarity=0.683 Sum_probs=60.9
Q ss_pred CCCCcccccccccccccceec-cCCCCccchhHHHHHhhcCCCCCCCcCCCccccCCCccHHHHHHHHHHHhhc
Q 035975 133 NFPSELKCSLCNTLFKEAVMI-PCCQHSFCEKCIRLVLVEKARCPKCFSSKCRLEDLLPNVSLRQAIEHFLESQ 205 (685)
Q Consensus 133 ~LeeeLtCPIClelf~dPVtL-pCCGHSFC~~CI~~~lk~~~sCPvCR~~~~~~~~L~pN~~L~nLVe~~redq 205 (685)
.+.+.+.|+||+++|.+|+++ +| ||+||..||..|+. ..||+||.. +....+.+|..|.++++.+....
T Consensus 18 ~l~~~~~C~IC~~~~~~pv~~~~C-gH~fC~~Ci~~~~~--~~CP~Cr~~-~~~~~~~~n~~l~~l~~~~~~~~ 87 (117)
T 1jm7_B 18 RLEKLLRCSRCTNILREPVCLGGC-EHIFCSNCVSDCIG--TGCPVCYTP-AWIQDLKINRQLDSMIQLCSKLR 87 (117)
T ss_dssp HHHHTTSCSSSCSCCSSCBCCCSS-SCCBCTTTGGGGTT--TBCSSSCCB-CSCSSCCCCHHHHHHHHHHHHHH
T ss_pred hchhCCCCCCCChHhhCccEeCCC-CCHHHHHHHHHHhc--CCCcCCCCc-CccccccccHHHHHHHHHHHHHH
Confidence 356689999999999999999 87 99999999999987 789999974 56788999999999999887644
No 21
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.23 E-value=1.7e-12 Score=115.25 Aligned_cols=72 Identities=26% Similarity=0.555 Sum_probs=60.8
Q ss_pred cCCCCCcccccccccccccceeccCCCCccchhHHHHHhhc-CCCCCCCcCCCcc------ccCCCccHHHHHHHHHHHh
Q 035975 131 NGNFPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVE-KARCPKCFSSKCR------LEDLLPNVSLRQAIEHFLE 203 (685)
Q Consensus 131 ~e~LeeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~-~~sCPvCR~~~~~------~~~L~pN~~L~nLVe~~re 203 (685)
...+.+++.|+||+++|.+|++++| ||+||..||..|+.. ...||+||..+.. ..++.+|..|.+++..+..
T Consensus 9 ~~~~~~~~~C~iC~~~~~~p~~~~C-gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p 87 (115)
T 3l11_A 9 AIPSLSECQCGICMEILVEPVTLPC-NHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYP 87 (115)
T ss_dssp CCCCHHHHBCTTTCSBCSSCEECTT-SCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSH
T ss_pred ccCCCCCCCCccCCcccCceeEcCC-CCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCC
Confidence 3456678999999999999999998 999999999999876 4689999985432 4678889999999988754
No 22
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.21 E-value=3.3e-12 Score=117.52 Aligned_cols=66 Identities=32% Similarity=0.677 Sum_probs=53.4
Q ss_pred CCCcccccccccccccceeccCCCCccchhHHHHHhhcCCCCCCCcCCCccccCCCccHHHHHHHHHHHh
Q 035975 134 FPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKARCPKCFSSKCRLEDLLPNVSLRQAIEHFLE 203 (685)
Q Consensus 134 LeeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~~~sCPvCR~~~~~~~~L~pN~~L~nLVe~~re 203 (685)
++++++|+||+++|.+|++++| ||+||..||..|+.....||+||..+. ....+..+.++|..+..
T Consensus 50 ~~~~~~C~iC~~~~~~~~~~~C-gH~fc~~Ci~~~~~~~~~CP~Cr~~~~---~~~~~~~~~~~i~~~~~ 115 (138)
T 4ayc_A 50 LENELQCIICSEYFIEAVTLNC-AHSFCSYCINEWMKRKIECPICRKDIK---SKTYSLVLDNCINKMVN 115 (138)
T ss_dssp HHHHSBCTTTCSBCSSEEEETT-SCEEEHHHHHHHTTTCSBCTTTCCBCC---CEEECHHHHHHHHHHHT
T ss_pred ccccCCCcccCcccCCceECCC-CCCccHHHHHHHHHcCCcCCCCCCcCC---CCCCccchhHHHHHHHH
Confidence 4567899999999999999998 999999999999998889999997532 23345666666665543
No 23
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.3e-11 Score=101.27 Aligned_cols=59 Identities=29% Similarity=0.624 Sum_probs=49.5
Q ss_pred cccCCCCCcccccccccccccceec-cCCCCccchhHHHHHhhcCCCCCCCcCCCccccCCC
Q 035975 129 MENGNFPSELKCSLCNTLFKEAVMI-PCCQHSFCEKCIRLVLVEKARCPKCFSSKCRLEDLL 189 (685)
Q Consensus 129 ~~~e~LeeeLtCPIClelf~dPVtL-pCCGHSFC~~CI~~~lk~~~sCPvCR~~~~~~~~L~ 189 (685)
...+.+++.+.|+||++.|.+|+++ +| ||+||..||..|+.....||+||.. +...++.
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~C-gH~fC~~Ci~~~~~~~~~CP~Cr~~-~~~~~~~ 66 (72)
T 2djb_A 7 GNLSELTPYILCSICKGYLIDATTITEC-LHTFCKSCIVRHFYYSNRCPKCNIV-VHQTQPL 66 (72)
T ss_dssp CCCCCCCGGGSCTTTSSCCSSCEECSSS-CCEECHHHHHHHHHHCSSCTTTCCC-CCSSCSC
T ss_pred hhHhhcCCCCCCCCCChHHHCcCEECCC-CCHHHHHHHHHHHHcCCcCCCcCcc-cCccccc
Confidence 3456788899999999999999998 76 9999999999999888899999974 3334443
No 24
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.16 E-value=5.3e-12 Score=110.59 Aligned_cols=68 Identities=31% Similarity=0.677 Sum_probs=56.6
Q ss_pred CCCcccccccccccccceeccCCCCccchhHHHHHhhcC---CCCCCCcCCCccccCCCccHHHHHHHHHHHh
Q 035975 134 FPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEK---ARCPKCFSSKCRLEDLLPNVSLRQAIEHFLE 203 (685)
Q Consensus 134 LeeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~~---~sCPvCR~~~~~~~~L~pN~~L~nLVe~~re 203 (685)
+.+.+.|+||++.|.+|++++| ||+||..||..|+... ..||+||. ......+.+|..+.++++.++.
T Consensus 18 ~~~~~~C~IC~~~~~~p~~~~C-gH~fC~~Ci~~~~~~~~~~~~CP~Cr~-~~~~~~~~~~~~l~~~~~~~~~ 88 (112)
T 1jm7_A 18 MQKILECPICLELIKEPVSTKC-DHIFCKFCMLKLLNQKKGPSQCPLCKN-DITKRSLQESTRFSQLVEELLK 88 (112)
T ss_dssp HHHHTSCSSSCCCCSSCCBCTT-SCCCCSHHHHHHHHSSSSSCCCTTTSC-CCCTTTCBCCCSSSHHHHHHHH
T ss_pred ccCCCCCcccChhhcCeEECCC-CCHHHHHHHHHHHHhCCCCCCCcCCCC-cCCHhhcCccHHHHHHHHHHHH
Confidence 4557899999999999999998 9999999999999865 48999997 4556777788777777776654
No 25
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=1.2e-11 Score=103.85 Aligned_cols=65 Identities=26% Similarity=0.638 Sum_probs=52.0
Q ss_pred cccCCCCCccccccccccccc----ceeccCCCCccchhHHHHHhhcC---CCCCCCcCCCcc--ccCCCccHHH
Q 035975 129 MENGNFPSELKCSLCNTLFKE----AVMIPCCQHSFCEKCIRLVLVEK---ARCPKCFSSKCR--LEDLLPNVSL 194 (685)
Q Consensus 129 ~~~e~LeeeLtCPIClelf~d----PVtLpCCGHSFC~~CI~~~lk~~---~sCPvCR~~~~~--~~~L~pN~~L 194 (685)
...+.+.+.+.|+||++.|.+ |+.++| ||+||..||..|+... ..||.||..+.. ...|..|+.+
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~C-gH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~~l~~n~~~ 80 (88)
T 2ct2_A 7 GNLDALREVLECPICMESFTEEQLRPKLLHC-GHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQLTDNLTV 80 (88)
T ss_dssp CSCCCCCSCCBCTTTCCBCCTTSSCEEECSS-SCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTTTSEECTTT
T ss_pred cChhhccCCCCCccCCccccccCCCeEECCC-CChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHHHHHHHHHH
Confidence 445678889999999999999 999998 9999999999999875 689999984322 2445555433
No 26
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.14 E-value=1.9e-11 Score=109.45 Aligned_cols=68 Identities=26% Similarity=0.583 Sum_probs=57.9
Q ss_pred cCCCCCcccccccccccccceeccCCCCccchhHHHHHhhcCC-CCCCCcCCCccccCCCccHHHHHHHHH
Q 035975 131 NGNFPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKA-RCPKCFSSKCRLEDLLPNVSLRQAIEH 200 (685)
Q Consensus 131 ~e~LeeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~~~-sCPvCR~~~~~~~~L~pN~~L~nLVe~ 200 (685)
...+.+.+.|+||+++|.+|++++| ||+||..||..|+.... .||+||.. .....+.++..+.++|..
T Consensus 12 ~~~~~~~~~C~IC~~~~~~p~~~~C-gH~fC~~Ci~~~~~~~~~~CP~Cr~~-~~~~~~~~~~~l~~~i~~ 80 (118)
T 3hct_A 12 DPPLESKYECPICLMALREAVQTPC-GHRFCKACIIKSIRDAGHKCPVDNEI-LLENQLFPDNFAKREILS 80 (118)
T ss_dssp SSCCCGGGBCTTTCSBCSSEEECTT-SCEEEHHHHHHHHHHHCSBCTTTCCB-CCGGGCEECHHHHHHHHT
T ss_pred ccCCCCCCCCCcCChhhcCeEECCc-CChhhHHHHHHHHhhCCCCCCCCCCC-cCHHhcccCHHHHHHHcc
Confidence 4568889999999999999999997 99999999999998765 89999974 555677788877777654
No 27
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=4.4e-11 Score=96.35 Aligned_cols=51 Identities=25% Similarity=0.651 Sum_probs=45.1
Q ss_pred cCCCCCcccccccccccccceeccCCCCccchhHHHHHhh-cCCCCCCCcCCC
Q 035975 131 NGNFPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLV-EKARCPKCFSSK 182 (685)
Q Consensus 131 ~e~LeeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk-~~~sCPvCR~~~ 182 (685)
.+.+.+.+.|+||++.+.+|+.++| ||+||..||..|+. ....||+||..+
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~C-gH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 60 (66)
T 2ecy_A 9 VKTVEDKYKCEKCHLVLCSPKQTEC-GHRFCESCMAALLSSSSPKCTACQESI 60 (66)
T ss_dssp CCSCCCCEECTTTCCEESSCCCCSS-SCCCCHHHHHHHHTTSSCCCTTTCCCC
T ss_pred hhcCCcCCCCCCCChHhcCeeECCC-CCHHHHHHHHHHHHhCcCCCCCCCcCC
Confidence 4567889999999999999999998 99999999999995 456899999743
No 28
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=4.4e-11 Score=97.40 Aligned_cols=50 Identities=32% Similarity=0.760 Sum_probs=44.6
Q ss_pred cCCCCCcccccccccccccceeccCCCCccchhHHHHHhhc---CCCCCCCcCC
Q 035975 131 NGNFPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVE---KARCPKCFSS 181 (685)
Q Consensus 131 ~e~LeeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~---~~sCPvCR~~ 181 (685)
.+.+.+.+.|+||++.|.+|++++| ||+||..||..|+.. ...||+||..
T Consensus 14 ~~~~~~~~~C~IC~~~~~~~~~~~C-gH~fC~~Ci~~~~~~~~~~~~CP~Cr~~ 66 (73)
T 2ysl_A 14 VNKLQEEVICPICLDILQKPVTIDC-GHNFCLKCITQIGETSCGFFKCPLCKTS 66 (73)
T ss_dssp CCCCCCCCBCTTTCSBCSSEEECTT-CCEEEHHHHHHHCSSSCSCCCCSSSCCC
T ss_pred HHhCccCCEeccCCcccCCeEEcCC-CChhhHHHHHHHHHcCCCCCCCCCCCCc
Confidence 4567889999999999999999998 999999999999973 4589999974
No 29
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=4.4e-11 Score=95.35 Aligned_cols=48 Identities=31% Similarity=0.762 Sum_probs=42.8
Q ss_pred ccCCCCCcccccccccccccceeccCCCCccchhHHHHHhhc---CCCCCCC
Q 035975 130 ENGNFPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVE---KARCPKC 178 (685)
Q Consensus 130 ~~e~LeeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~---~~sCPvC 178 (685)
..+.+.+++.|+||++.|.+|++++| ||+||..||..|+.. ...||+|
T Consensus 13 ~~~~~~~~~~C~IC~~~~~~p~~~~C-gH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 13 FVNKLQEEVICPICLDILQKPVTIDC-GHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCCBCTTTCSBCSSCEECTT-SSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHHhCccCCCCCcCCchhCCeEEeCC-CCcchHHHHHHHHHcCCCCCcCcCC
Confidence 34668889999999999999999998 999999999999984 4589998
No 30
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.10 E-value=1.9e-11 Score=108.62 Aligned_cols=66 Identities=24% Similarity=0.557 Sum_probs=51.8
Q ss_pred CCCcccccccccccccceeccCCCCccchhHHHHHhhc-CCCCCCCcCCCccccCCCccHHHHHHHHH
Q 035975 134 FPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVE-KARCPKCFSSKCRLEDLLPNVSLRQAIEH 200 (685)
Q Consensus 134 LeeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~-~~sCPvCR~~~~~~~~L~pN~~L~nLVe~ 200 (685)
+.+.+.|+||+++|.+|++++| ||+||..||..|+.. ...||+||..+.......++..+.+++..
T Consensus 20 ~~~~~~C~IC~~~~~~p~~~~C-gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~ 86 (116)
T 1rmd_A 20 FVKSISCQICEHILADPVETSC-KHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNS 86 (116)
T ss_dssp HHHHTBCTTTCSBCSSEEECTT-SCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHH
T ss_pred ccCCCCCCCCCcHhcCcEEcCC-CCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHH
Confidence 4567899999999999999998 999999999999987 57899999854433333455555555533
No 31
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=5.6e-11 Score=97.22 Aligned_cols=50 Identities=24% Similarity=0.553 Sum_probs=44.7
Q ss_pred CCCCCcccccccccccccceeccCCCCccchhHHHHHhhcCCCCCCCcCCC
Q 035975 132 GNFPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKARCPKCFSSK 182 (685)
Q Consensus 132 e~LeeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~~~sCPvCR~~~ 182 (685)
....+.+.|+||++.|.+|+.++| ||+||..||..|+.....||+||..+
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~C-gH~fC~~Ci~~~~~~~~~CP~Cr~~~ 59 (71)
T 2d8t_A 10 APSLTVPECAICLQTCVHPVSLPC-KHVFCYLCVKGASWLGKRCALCRQEI 59 (71)
T ss_dssp CSSSSCCBCSSSSSBCSSEEEETT-TEEEEHHHHHHCTTCSSBCSSSCCBC
T ss_pred ccCCCCCCCccCCcccCCCEEccC-CCHHHHHHHHHHHHCCCcCcCcCchh
Confidence 345668999999999999999997 99999999999998888999999743
No 32
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=1.4e-10 Score=90.30 Aligned_cols=48 Identities=38% Similarity=0.827 Sum_probs=42.1
Q ss_pred ccCCCCCcccccccccccccceeccCCCCccchhHHHHHhhc---CCCCCCC
Q 035975 130 ENGNFPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVE---KARCPKC 178 (685)
Q Consensus 130 ~~e~LeeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~---~~sCPvC 178 (685)
..+.+.+.+.|+||++.+.+|++++| ||+||..||..|+.. ...||+|
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~C-gH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 8 ALENLQVEASCSVCLEYLKEPVIIEC-GHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSSCSCCCCBCSSSCCBCSSCCCCSS-CCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred HhhccccCCCCccCCcccCccEeCCC-CCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34667889999999999999999998 999999999999653 4689998
No 33
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=1.3e-10 Score=93.09 Aligned_cols=50 Identities=28% Similarity=0.689 Sum_probs=45.3
Q ss_pred cCCCCCcccccccccccccc-------eeccCCCCccchhHHHHHhhcCCCCCCCcCC
Q 035975 131 NGNFPSELKCSLCNTLFKEA-------VMIPCCQHSFCEKCIRLVLVEKARCPKCFSS 181 (685)
Q Consensus 131 ~e~LeeeLtCPIClelf~dP-------VtLpCCGHSFC~~CI~~~lk~~~sCPvCR~~ 181 (685)
...+.+.+.|+||++.|.+| +.++| ||.||..||..|+.....||+||..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~C-gH~fc~~Ci~~~~~~~~~CP~Cr~~ 65 (69)
T 2ea6_A 9 GLRPSGTVSCPICMDGYSEIVQNGRLIVSTEC-GHVFCSQCLRDSLKNANTCPTCRKK 65 (69)
T ss_dssp CCCTTCCCCCTTTCCCHHHHTTTTCCEEECSS-SCEEEHHHHHHHHHHCSSCTTTCCC
T ss_pred ccCCCCCCCCcccCccccccccccCCeEeCCC-CChhcHHHHHHHHHcCCCCCCCCCc
Confidence 45677899999999999998 88898 9999999999999988899999974
No 34
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.02 E-value=1.2e-10 Score=94.19 Aligned_cols=56 Identities=27% Similarity=0.644 Sum_probs=47.3
Q ss_pred CCCcccccccccccccc-------eeccCCCCccchhHHHHHhhcCCCCCCCcCCCccccCCCcc
Q 035975 134 FPSELKCSLCNTLFKEA-------VMIPCCQHSFCEKCIRLVLVEKARCPKCFSSKCRLEDLLPN 191 (685)
Q Consensus 134 LeeeLtCPIClelf~dP-------VtLpCCGHSFC~~CI~~~lk~~~sCPvCR~~~~~~~~L~pN 191 (685)
..+++.|+||++.|.+| +.++| ||+||..||..|+.....||+||.. .....+.++
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~C-gH~fc~~Ci~~~~~~~~~CP~Cr~~-~~~~~~~~~ 69 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTEC-GHVFCSQCLRDSLKNANTCPTCRKK-INHKRYHPI 69 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTT-SCEEEHHHHHHHHHHCSBCTTTCCB-CCCCSCCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCC-CChHhHHHHHHHHHcCCCCCCCCCc-cChhheeec
Confidence 45689999999999998 88898 9999999999999988999999974 444555443
No 35
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.01 E-value=5.2e-11 Score=110.99 Aligned_cols=67 Identities=19% Similarity=0.596 Sum_probs=53.3
Q ss_pred CCCCCcccccccccccccceeccCCCCccchhHHHHHhhcCC-CCCCCcCCCc--------cccCCCccHHHHHHHH
Q 035975 132 GNFPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKA-RCPKCFSSKC--------RLEDLLPNVSLRQAIE 199 (685)
Q Consensus 132 e~LeeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~~~-sCPvCR~~~~--------~~~~L~pN~~L~nLVe 199 (685)
+.+++.+.|+||+++|.+|++++| ||+||..||..|+.... .||+||..+. ....+.++..+.++|.
T Consensus 26 ~~l~~~~~C~IC~~~~~~pv~~~C-gH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~ 101 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRPFQAQC-GHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVE 101 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSEEECTT-SCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHH
T ss_pred ccCCcCcCCCCCChhhcCcEECCC-CCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHc
Confidence 457889999999999999999998 99999999999998664 8999997432 1234556666665554
No 36
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.00 E-value=1.5e-10 Score=118.80 Aligned_cols=70 Identities=17% Similarity=0.325 Sum_probs=61.1
Q ss_pred CCCCCcccccccccccccceec-cCCCCccchhHHHHHhhcC--CCCCC--CcCCCccccCCCccHHHHHHHHHHHh
Q 035975 132 GNFPSELKCSLCNTLFKEAVMI-PCCQHSFCEKCIRLVLVEK--ARCPK--CFSSKCRLEDLLPNVSLRQAIEHFLE 203 (685)
Q Consensus 132 e~LeeeLtCPIClelf~dPVtL-pCCGHSFC~~CI~~~lk~~--~sCPv--CR~~~~~~~~L~pN~~L~nLVe~~re 203 (685)
.....+++||||+++|.+||++ .| ||+||+.||..||... ..||+ |++ .+...+|.+|..|.++|+.++.
T Consensus 176 ~~~~~el~CPIcl~~f~DPVts~~C-GHsFcR~cI~~~~~~~~~~~CPvtGCr~-~l~~~dL~pN~~L~~lve~~k~ 250 (267)
T 3htk_C 176 EGGKIELTCPITCKPYEAPLISRKC-NHVFDRDGIQNYLQGYTTRDCPQAACSQ-VVSMRDFVRDPIMELRCKIAKM 250 (267)
T ss_dssp CSSBCCSBCTTTSSBCSSEEEESSS-CCEEEHHHHHHHSTTCSCEECSGGGCSC-EECGGGEEECHHHHHHHHHHHH
T ss_pred cCCceeeECcCccCcccCCeeeCCC-CCcccHHHHHHHHHhCCCCCCCcccccC-cCchhhCCcCHHHHHHHHHHHH
Confidence 3456789999999999999986 66 9999999999999764 47999 997 5678899999999999988765
No 37
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.00 E-value=1.6e-10 Score=109.03 Aligned_cols=68 Identities=26% Similarity=0.576 Sum_probs=57.1
Q ss_pred cCCCCCcccccccccccccceeccCCCCccchhHHHHHhhcC-CCCCCCcCCCccccCCCccHHHHHHHHH
Q 035975 131 NGNFPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEK-ARCPKCFSSKCRLEDLLPNVSLRQAIEH 200 (685)
Q Consensus 131 ~e~LeeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~~-~sCPvCR~~~~~~~~L~pN~~L~nLVe~ 200 (685)
...+.+.|.|+||+++|.+|++++| ||+||..||..|+... ..||+||.. +....+.++..+.++|..
T Consensus 12 ~~~~~~~~~C~IC~~~~~~pv~~~C-gH~fC~~Ci~~~~~~~~~~CP~Cr~~-~~~~~~~~~~~~~~~i~~ 80 (170)
T 3hcs_A 12 DPPLESKYECPICLMALREAVQTPC-GHRFCKACIIKSIRDAGHKCPVDNEI-LLENQLFPDNFAKREILS 80 (170)
T ss_dssp SSCCCGGGBCTTTCSBCSSEEECTT-SCEEEHHHHHHHHHHHCSBCTTTCCB-CCGGGCEECHHHHHHHHT
T ss_pred ccCCCCCCCCCCCChhhcCcEECCC-CCHHHHHHHHHHHHhCCCCCCCCccC-cchhhhhhhHHHHHHHhh
Confidence 4568889999999999999999998 9999999999999765 489999974 455667788777776654
No 38
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.92 E-value=6.2e-10 Score=92.02 Aligned_cols=53 Identities=28% Similarity=0.632 Sum_probs=44.6
Q ss_pred ccCCCCCcccccccccccccc---eeccCCCCccchhHHHHHhhcCCCCCCCcCCCc
Q 035975 130 ENGNFPSELKCSLCNTLFKEA---VMIPCCQHSFCEKCIRLVLVEKARCPKCFSSKC 183 (685)
Q Consensus 130 ~~e~LeeeLtCPIClelf~dP---VtLpCCGHSFC~~CI~~~lk~~~sCPvCR~~~~ 183 (685)
..+.+...+.|+||++.|.++ +.++| ||.||..||..|+.....||+||..+.
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~C-~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 63 (78)
T 2ect_A 8 TEEHVGSGLECPVCKEDYALGESVRQLPC-NHLFHDSCIVPWLEQHDSCPVCRKSLT 63 (78)
T ss_dssp CCTTSSSSCCCTTTTSCCCTTSCEEECTT-SCEEETTTTHHHHTTTCSCTTTCCCCC
T ss_pred CcccCCCCCCCeeCCccccCCCCEEEeCC-CCeecHHHHHHHHHcCCcCcCcCCccC
Confidence 345567789999999999876 45687 999999999999988889999998543
No 39
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.91 E-value=6.5e-10 Score=89.23 Aligned_cols=54 Identities=26% Similarity=0.753 Sum_probs=43.6
Q ss_pred Cccccccccc-ccccc----eeccCCCCccchhHHHHHhhcC-CCCCCCcCCCccccCCCcc
Q 035975 136 SELKCSLCNT-LFKEA----VMIPCCQHSFCEKCIRLVLVEK-ARCPKCFSSKCRLEDLLPN 191 (685)
Q Consensus 136 eeLtCPICle-lf~dP----VtLpCCGHSFC~~CI~~~lk~~-~sCPvCR~~~~~~~~L~pN 191 (685)
+++.|+||++ +|.+| ++++| ||+||..||..|+... ..||+||.. ....++.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~C-gH~fC~~Ci~~~~~~~~~~CP~Cr~~-~~~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVC-GHTLCESCVDLLFVRGAGNCPECGTP-LRKSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTT-CCCEEHHHHHHHHHTTSSSCTTTCCC-CSSCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCC-CCHhHHHHHHHHHHcCCCcCCCCCCc-cccccceee
Confidence 4688999999 99999 46887 9999999999997654 579999974 445555544
No 40
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=8.3e-10 Score=90.41 Aligned_cols=55 Identities=27% Similarity=0.549 Sum_probs=46.6
Q ss_pred ccCCCCCcccccccccccccceec---cCCCCccchhHHHHHhhcCCCCCCCcCCCccc
Q 035975 130 ENGNFPSELKCSLCNTLFKEAVMI---PCCQHSFCEKCIRLVLVEKARCPKCFSSKCRL 185 (685)
Q Consensus 130 ~~e~LeeeLtCPIClelf~dPVtL---pCCGHSFC~~CI~~~lk~~~sCPvCR~~~~~~ 185 (685)
...++.++..|+||++.|.++..+ +| +|.||..||..|+.....||+||..+...
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~C-~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 8 KVKELNLHELCAVCLEDFKPRDELGICPC-KHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp CCCCCCCSCBCSSSCCBCCSSSCEEEETT-TEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred ccccCCCCCCCcCCCcccCCCCcEEEcCC-CCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 345677889999999999887655 87 99999999999999888999999865443
No 41
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.91 E-value=3.4e-10 Score=89.35 Aligned_cols=52 Identities=27% Similarity=0.677 Sum_probs=43.9
Q ss_pred Ccccccccccccccc-------eeccCCCCccchhHHHHHhhcCCCCCCCcCCCccccCCC
Q 035975 136 SELKCSLCNTLFKEA-------VMIPCCQHSFCEKCIRLVLVEKARCPKCFSSKCRLEDLL 189 (685)
Q Consensus 136 eeLtCPIClelf~dP-------VtLpCCGHSFC~~CI~~~lk~~~sCPvCR~~~~~~~~L~ 189 (685)
+.+.|+||++.|.+| +.++| ||.||..||..|+.....||+||.. ....++.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~C-gH~fc~~Ci~~~~~~~~~CP~Cr~~-~~~~~~~ 60 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTEC-GHVFCSQCLRDSLKNANTCPTCRKK-INHKRYH 60 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETT-SCEEEHHHHHHHHHHCSBCTTTCCB-CTTTCEE
T ss_pred CCCCCCccChhhhCccccCCCEEeCCC-CCchhHHHHHHHHHcCCCCCCCCcc-CCcccee
Confidence 468899999999998 78898 9999999999999988899999974 3333433
No 42
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.86 E-value=1.9e-09 Score=91.47 Aligned_cols=52 Identities=19% Similarity=0.547 Sum_probs=42.3
Q ss_pred cCCCCCcccccccccccc--cceecc--CCCCccchhHHHHHhhc-CCCCCCCcCCCc
Q 035975 131 NGNFPSELKCSLCNTLFK--EAVMIP--CCQHSFCEKCIRLVLVE-KARCPKCFSSKC 183 (685)
Q Consensus 131 ~e~LeeeLtCPIClelf~--dPVtLp--CCGHSFC~~CI~~~lk~-~~sCPvCR~~~~ 183 (685)
...++++++||||++.+. ++++++ | ||+||..||..++.. ...||.||+.+.
T Consensus 5 ~~~~~~~~~CpICle~~~~~d~~~~p~~C-GH~fC~~Cl~~~~~~~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 5 PDAKEDPVECPLCMEPLEIDDINFFPCTC-GYQICRFCWHRIRTDENGLCPACRKPYP 61 (78)
T ss_dssp SCCCCCCCBCTTTCCBCCTTTTTCCSSTT-SCCCCHHHHHHHTTSSCSBCTTTCCBCS
T ss_pred ccccccCCcCCccCccCccccccccccCC-CCCcCHHHHHHHHhcCCCCCCCCCCccC
Confidence 356788999999999884 566666 6 999999999999854 468999998543
No 43
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=6.8e-10 Score=90.03 Aligned_cols=51 Identities=29% Similarity=0.691 Sum_probs=45.2
Q ss_pred cCCCCCcccccccccccccceeccCCCCccchhHHHHHhhcCCCCCCCcCCCc
Q 035975 131 NGNFPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKARCPKCFSSKC 183 (685)
Q Consensus 131 ~e~LeeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~~~sCPvCR~~~~ 183 (685)
...+.+.+.|+||++.+.+ +.++| ||+||..||..|+.....||+||..+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~-~~~~C-gH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (70)
T 2ecn_A 9 VKQLTDEEECCICMDGRAD-LILPC-AHSFCQKCIDKWSDRHRNCPICRLQMT 59 (70)
T ss_dssp CCCCCCCCCCSSSCCSCCS-EEETT-TEEECHHHHHHSSCCCSSCHHHHHCTT
T ss_pred hhcCCCCCCCeeCCcCccC-cccCC-CCcccHHHHHHHHHCcCcCCCcCCccc
Confidence 3567788999999999999 99998 999999999999988889999997543
No 44
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.84 E-value=9.6e-10 Score=86.87 Aligned_cols=45 Identities=27% Similarity=0.690 Sum_probs=39.2
Q ss_pred CCcccccccccccccceeccCCCCccchhHHHHHhhcCCCCCCCcCCCc
Q 035975 135 PSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKARCPKCFSSKC 183 (685)
Q Consensus 135 eeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~~~sCPvCR~~~~ 183 (685)
.+.++|+||++.|.+|++|+| ||+||..||.. ....||+||+.+.
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~C-gH~fC~~Ci~~---~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPC-LHTLCSGCLEA---SGMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTT-SCCSBTTTCSS---SSSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCCeEEcCC-CCcccHHHHcc---CCCCCCcCCcEee
Confidence 568999999999999999998 99999999976 2568999998543
No 45
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.82 E-value=2.3e-09 Score=82.87 Aligned_cols=47 Identities=26% Similarity=0.766 Sum_probs=42.2
Q ss_pred CCCccccccccccccc---ceecc-CCCCccchhHHHHHhhcCCCCCCCcCC
Q 035975 134 FPSELKCSLCNTLFKE---AVMIP-CCQHSFCEKCIRLVLVEKARCPKCFSS 181 (685)
Q Consensus 134 LeeeLtCPIClelf~d---PVtLp-CCGHSFC~~CI~~~lk~~~sCPvCR~~ 181 (685)
+.+...|+||++.|.+ ++.++ | ||.||..||..|+.....||+||+.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C-~H~f~~~Ci~~w~~~~~~CP~Cr~~ 52 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRC-GHGFHAECVDMWLGSHSTCPLCRLT 52 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSS-CCEECTTHHHHTTTTCCSCSSSCCC
T ss_pred CCCCCcCccCCccccCCCceEECCCC-CCcccHHHHHHHHHcCCcCcCCCCE
Confidence 4678899999999988 78887 6 9999999999999988899999974
No 46
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.80 E-value=3.7e-09 Score=85.42 Aligned_cols=50 Identities=26% Similarity=0.700 Sum_probs=42.7
Q ss_pred CCCCCcccccccccccc---cceeccCCCCccchhHHHHHhhcCCCCCCCcCCC
Q 035975 132 GNFPSELKCSLCNTLFK---EAVMIPCCQHSFCEKCIRLVLVEKARCPKCFSSK 182 (685)
Q Consensus 132 e~LeeeLtCPIClelf~---dPVtLpCCGHSFC~~CI~~~lk~~~sCPvCR~~~ 182 (685)
........|+||++.|. .++.++| ||.||..||..|+.....||+||..+
T Consensus 9 ~~~~~~~~C~IC~~~~~~~~~~~~~~C-~H~fc~~Ci~~~~~~~~~CP~Cr~~~ 61 (69)
T 2kiz_A 9 TEEDTEEKCTICLSILEEGEDVRRLPC-MHLFHQVCVDQWLITNKKCPICRVDI 61 (69)
T ss_dssp CSTTCCCSBTTTTBCCCSSSCEEECTT-SCEEEHHHHHHHHHHCSBCTTTCSBS
T ss_pred CcCCCCCCCeeCCccccCCCcEEEeCC-CCHHHHHHHHHHHHcCCCCcCcCccc
Confidence 44566889999999885 4678897 99999999999999888999999743
No 47
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.79 E-value=2.5e-09 Score=86.02 Aligned_cols=47 Identities=26% Similarity=0.655 Sum_probs=41.6
Q ss_pred CCcccccccccccccc-eeccCCCCccchhHHHHHhhcCCCCCCCcCCC
Q 035975 135 PSELKCSLCNTLFKEA-VMIPCCQHSFCEKCIRLVLVEKARCPKCFSSK 182 (685)
Q Consensus 135 eeeLtCPIClelf~dP-VtLpCCGHSFC~~CI~~~lk~~~sCPvCR~~~ 182 (685)
.....|+||++.+.+| +.++| ||+||..||..|+.....||.||..+
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C-~H~fc~~Ci~~~~~~~~~CP~Cr~~~ 50 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPC-LHAFCYVCITRWIRQNPTCPLCKVPV 50 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTT-TEEESTTHHHHHHHHSCSTTTTCCCC
T ss_pred CCCCCCeeCCccccCCcEecCC-CCeeHHHHHHHHHhCcCcCcCCChhh
Confidence 3467899999999997 77887 99999999999998889999999754
No 48
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.78 E-value=2e-09 Score=95.59 Aligned_cols=47 Identities=30% Similarity=0.771 Sum_probs=43.2
Q ss_pred CCcccccccccccccc-------eeccCCCCccchhHHHHHhhcCCCCCCCcCCC
Q 035975 135 PSELKCSLCNTLFKEA-------VMIPCCQHSFCEKCIRLVLVEKARCPKCFSSK 182 (685)
Q Consensus 135 eeeLtCPIClelf~dP-------VtLpCCGHSFC~~CI~~~lk~~~sCPvCR~~~ 182 (685)
.+++.|+||++.|.+| +.++| ||+||..||.+|+.....||+||+.+
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~C-gH~fc~~Ci~~~~~~~~~CP~Cr~~~ 58 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTEC-GHVFCSQCLRDSLKNANTCPTCRKKI 58 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETT-CCEEEHHHHHHHHTTCSBCTTTCCBC
T ss_pred CCCCCCcccChhhhCccccccCeEecCC-CChhhHHHHHHHHHhCCCCCCCCCcC
Confidence 5689999999999999 99998 99999999999999888999999743
No 49
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.77 E-value=3.6e-09 Score=81.58 Aligned_cols=45 Identities=29% Similarity=0.665 Sum_probs=40.4
Q ss_pred Cccccccccccccc----ceeccCCCCccchhHHHHHhhcCCCCCCCcCC
Q 035975 136 SELKCSLCNTLFKE----AVMIPCCQHSFCEKCIRLVLVEKARCPKCFSS 181 (685)
Q Consensus 136 eeLtCPIClelf~d----PVtLpCCGHSFC~~CI~~~lk~~~sCPvCR~~ 181 (685)
....|+||++.|.+ ++.++| ||.||..||..|+.....||+||..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C-gH~fc~~Ci~~~~~~~~~CP~Cr~~ 52 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPC-GHLLHRTCYEEMLKEGYRCPLCSGP 52 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTT-SCEEETTHHHHHHHHTCCCTTSCCS
T ss_pred CCCcCcccChhhcCCCcCeEecCC-CCcccHHHHHHHHHcCCcCCCCCCc
Confidence 46789999999976 788887 9999999999999988999999974
No 50
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.75 E-value=4.8e-09 Score=86.38 Aligned_cols=48 Identities=27% Similarity=0.677 Sum_probs=42.7
Q ss_pred CCCcccccccccccccc---eeccCCCCccchhHHHHHhhcCCCCCCCcCCC
Q 035975 134 FPSELKCSLCNTLFKEA---VMIPCCQHSFCEKCIRLVLVEKARCPKCFSSK 182 (685)
Q Consensus 134 LeeeLtCPIClelf~dP---VtLpCCGHSFC~~CI~~~lk~~~sCPvCR~~~ 182 (685)
..+...|+||++.|.++ +.++| +|.||..||..|+.....||+||+.+
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C-~H~fh~~Ci~~w~~~~~~CP~Cr~~~ 70 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPC-NHEFHAKCVDKWLKANRTCPICRADS 70 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETT-TEEEETTHHHHHHHHCSSCTTTCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECC-CCHhHHHHHHHHHHcCCcCcCcCCcC
Confidence 45678999999999988 78897 99999999999999889999999753
No 51
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.72 E-value=5.4e-09 Score=89.86 Aligned_cols=47 Identities=28% Similarity=0.759 Sum_probs=42.4
Q ss_pred CCCccccccccccccc---ceeccCCCCccchhHHHHHhhcCCCCCCCcCC
Q 035975 134 FPSELKCSLCNTLFKE---AVMIPCCQHSFCEKCIRLVLVEKARCPKCFSS 181 (685)
Q Consensus 134 LeeeLtCPIClelf~d---PVtLpCCGHSFC~~CI~~~lk~~~sCPvCR~~ 181 (685)
..++..|+||++.|.+ ++.++| ||.||..||..|+.....||+||..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C-~H~Fh~~Ci~~wl~~~~~CP~Cr~~ 86 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPC-HHYFHKPCVSIWLQKSGTCPVCRCM 86 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETT-TEEEEHHHHHHHHTTTCBCTTTCCB
T ss_pred cCCCCCCcccChhhcCCCcEEecCC-CChHHHHHHHHHHHcCCcCcCcCcc
Confidence 4567899999999987 888997 9999999999999988899999974
No 52
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.69 E-value=1.1e-08 Score=90.23 Aligned_cols=47 Identities=23% Similarity=0.559 Sum_probs=39.1
Q ss_pred Ccccccccccccccce------------------eccCCCCccchhHHHHHhh-----cCCCCCCCcCCCc
Q 035975 136 SELKCSLCNTLFKEAV------------------MIPCCQHSFCEKCIRLVLV-----EKARCPKCFSSKC 183 (685)
Q Consensus 136 eeLtCPIClelf~dPV------------------tLpCCGHSFC~~CI~~~lk-----~~~sCPvCR~~~~ 183 (685)
.+..|+||++.|.+|. .++| +|.||..||..|+. ....||+||..+.
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C-~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKC-SHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSS-CCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCC-CCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 4569999999998775 6787 99999999999994 3468999997543
No 53
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.59 E-value=5.9e-09 Score=86.66 Aligned_cols=44 Identities=30% Similarity=0.813 Sum_probs=39.2
Q ss_pred CCCcccccccccccccceeccCCCCc-cchhHHHHHhhcCCCCCCCcCCC
Q 035975 134 FPSELKCSLCNTLFKEAVMIPCCQHS-FCEKCIRLVLVEKARCPKCFSSK 182 (685)
Q Consensus 134 LeeeLtCPIClelf~dPVtLpCCGHS-FC~~CI~~~lk~~~sCPvCR~~~ 182 (685)
+.+++.|+||++.+.+|++++| ||+ ||..|+..| ..||+||..+
T Consensus 21 ~~~~~~C~iC~~~~~~~~~~pC-gH~~~C~~C~~~~----~~CP~Cr~~i 65 (74)
T 4ic3_A 21 LQEEKLCKICMDRNIAIVFVPC-GHLVTCKQCAEAV----DKCPMCYTVI 65 (74)
T ss_dssp HHHHTBCTTTSSSBCCEEEETT-CCBCCCHHHHTTC----SBCTTTCCBC
T ss_pred CccCCCCCCCCCCCCCEEEcCC-CChhHHHHhhhcC----ccCCCcCcCc
Confidence 4457899999999999999998 999 999999876 7899999754
No 54
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.54 E-value=2e-08 Score=89.23 Aligned_cols=54 Identities=28% Similarity=0.708 Sum_probs=45.6
Q ss_pred CCcccccccccccccc-------eeccCCCCccchhHHHHHhhcCCCCCCCcCCCccccCCCc
Q 035975 135 PSELKCSLCNTLFKEA-------VMIPCCQHSFCEKCIRLVLVEKARCPKCFSSKCRLEDLLP 190 (685)
Q Consensus 135 eeeLtCPIClelf~dP-------VtLpCCGHSFC~~CI~~~lk~~~sCPvCR~~~~~~~~L~p 190 (685)
.+.+.|+||++.|.+| +.++| ||+||..||.+|+.....||+||.. .....+.+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~C-gH~fc~~Ci~~~~~~~~~CP~Cr~~-~~~~~~~~ 130 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTEC-GHVFCSQCLRDSLKNANTCPTCRKK-INHKRYHP 130 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETT-SBEEEHHHHHHHHHHCSBCTTTCCB-CCGGGEEE
T ss_pred CCCCCCCCCCCccccccccCcceEeCCC-CChhhHHHHHHHHHcCCCCCCCCCc-CChhccee
Confidence 4578899999999998 88898 9999999999999999999999974 33444443
No 55
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.52 E-value=1.8e-08 Score=83.63 Aligned_cols=43 Identities=28% Similarity=0.777 Sum_probs=37.5
Q ss_pred CCcccccccccccccceeccCCCCc-cchhHHHHHhhcCCCCCCCcCCC
Q 035975 135 PSELKCSLCNTLFKEAVMIPCCQHS-FCEKCIRLVLVEKARCPKCFSSK 182 (685)
Q Consensus 135 eeeLtCPIClelf~dPVtLpCCGHS-FC~~CI~~~lk~~~sCPvCR~~~ 182 (685)
.+.+.|+||++.+.+|++++| ||. ||..|+.. ...||+||..+
T Consensus 23 ~~~~~C~IC~~~~~~~~~~pC-gH~~~C~~C~~~----~~~CP~Cr~~i 66 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAIVFVPC-GHLVTCKQCAEA----VDKCPMCYTVI 66 (75)
T ss_dssp HHHHSCSSSCSSCCCBCCSSS-CCCCBCHHHHHH----CSBCTTTCCBC
T ss_pred CCCCCCCcCCCCCCCEEEecC-CCHHHHHHHhhC----CCCCccCCcee
Confidence 446789999999999999998 999 99999964 36899999754
No 56
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.50 E-value=3.8e-08 Score=80.03 Aligned_cols=53 Identities=9% Similarity=0.233 Sum_probs=45.4
Q ss_pred cccccccccccccceec-cCCCCccchhHHHHHhhcCCCCCCCcCCCccccCCCcc
Q 035975 137 ELKCSLCNTLFKEAVMI-PCCQHSFCEKCIRLVLVEKARCPKCFSSKCRLEDLLPN 191 (685)
Q Consensus 137 eLtCPIClelf~dPVtL-pCCGHSFC~~CI~~~lk~~~sCPvCR~~~~~~~~L~pN 191 (685)
.+.||||++++.+||.+ +| ||+||+.||..|+....+||+++. .....+|.++
T Consensus 3 ~~~CpIs~~~m~dPV~~~~s-G~~yer~~I~~~l~~~~~cP~t~~-~L~~~~Lip~ 56 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKS-RTIFEKSLLEQYVKDTGNDPITNE-PLSIEEIVEI 56 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTT-TEEEEHHHHHHHHHHHSBCTTTCC-BCCGGGCEEC
T ss_pred eEEecCCCCCCCCCEEeCCC-CcEEcHHHHHHHHHhCCCCcCCcC-CCChhhcEEC
Confidence 47899999999999999 76 999999999999987778999997 4555666655
No 57
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.44 E-value=6.6e-08 Score=104.10 Aligned_cols=49 Identities=24% Similarity=0.497 Sum_probs=43.1
Q ss_pred CCCcccccccccccccceeccCCCCccchhHHHHHhh-cCCCCCCCcCCCc
Q 035975 134 FPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLV-EKARCPKCFSSKC 183 (685)
Q Consensus 134 LeeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk-~~~sCPvCR~~~~ 183 (685)
......|+||++.+.+|+.++| ||.||..||..|+. ....||.||..+.
T Consensus 329 ~~~~~~C~ICle~~~~pv~lpC-GH~FC~~Ci~~wl~~~~~~CP~CR~~i~ 378 (389)
T 2y1n_A 329 GSTFQLCKICAENDKDVKIEPC-GHLMCTSCLTSWQESEGQGCPFCRCEIK 378 (389)
T ss_dssp TTSSSBCTTTSSSBCCEEEETT-CCEECHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred cCCCCCCCccCcCCCCeEEeCC-CChhhHHHHHHHHhcCCCCCCCCCCccC
Confidence 4456899999999999999998 99999999999988 5678999998544
No 58
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.43 E-value=4e-08 Score=84.59 Aligned_cols=45 Identities=27% Similarity=0.634 Sum_probs=37.9
Q ss_pred Ccccccccccccccceec---cCCCCccchhHHHHHhhcC--------CCCCC--CcCC
Q 035975 136 SELKCSLCNTLFKEAVMI---PCCQHSFCEKCIRLVLVEK--------ARCPK--CFSS 181 (685)
Q Consensus 136 eeLtCPIClelf~dPVtL---pCCGHSFC~~CI~~~lk~~--------~sCPv--CR~~ 181 (685)
+.++|+||++.+..|+++ +| ||+||..||..++... ..||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~C-gH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQC-QCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTT-TEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCC-CCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 478999999999998765 57 9999999999998741 37999 9963
No 59
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.38 E-value=1.7e-07 Score=79.17 Aligned_cols=45 Identities=29% Similarity=0.704 Sum_probs=38.8
Q ss_pred Cccccccccccccc--------------ceecc-CCCCccchhHHHHHhhcCCCCCCCcCC
Q 035975 136 SELKCSLCNTLFKE--------------AVMIP-CCQHSFCEKCIRLVLVEKARCPKCFSS 181 (685)
Q Consensus 136 eeLtCPIClelf~d--------------PVtLp-CCGHSFC~~CI~~~lk~~~sCPvCR~~ 181 (685)
++..|+||++.|.+ ++.++ | +|.|+..||.+|+.....||+||+.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C-~H~FH~~Ci~~Wl~~~~~CP~CR~~ 73 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGEC-NHSFHNCCMSLWVKQNNRCPLCQQD 73 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETT-SCEEEHHHHHHHTTTCCBCTTTCCB
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCC-CCccChHHHHHHHHhCCCCCCcCCC
Confidence 46779999999977 45555 6 9999999999999988999999974
No 60
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.34 E-value=1.4e-07 Score=76.65 Aligned_cols=46 Identities=20% Similarity=0.466 Sum_probs=41.3
Q ss_pred Ccccccccccccccceec--cCCCCc-cchhHHHHHhhcCCCCCCCcCCC
Q 035975 136 SELKCSLCNTLFKEAVMI--PCCQHS-FCEKCIRLVLVEKARCPKCFSSK 182 (685)
Q Consensus 136 eeLtCPIClelf~dPVtL--pCCGHS-FC~~CI~~~lk~~~sCPvCR~~~ 182 (685)
++..|+||++.+.+++.+ +| ||. ||..|+..++.....||+||..+
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pC-gH~~~C~~C~~~~~~~~~~CPiCR~~i 55 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKT-GHLMACFTCAKKLKKRNKPCPVCRQPI 55 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTE-EEEEECHHHHHHHHHTTCCCTTTCCCC
T ss_pred CcCCCCcCCCCCCCEEEECCCC-CChhhHHHHHHHHHHcCCcCCCcCcch
Confidence 467899999999999987 98 999 89999999998778999999753
No 61
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=4.9e-07 Score=74.53 Aligned_cols=45 Identities=24% Similarity=0.710 Sum_probs=38.9
Q ss_pred CCCcccccccccccccceeccCCCCc-cchhHHHHHhhcCCCCCCCcCCCc
Q 035975 134 FPSELKCSLCNTLFKEAVMIPCCQHS-FCEKCIRLVLVEKARCPKCFSSKC 183 (685)
Q Consensus 134 LeeeLtCPIClelf~dPVtLpCCGHS-FC~~CI~~~lk~~~sCPvCR~~~~ 183 (685)
..+...|+||++.+.+++++|| ||. ||..|+.. ...||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pC-gH~~~C~~C~~~----~~~CP~CR~~i~ 57 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPC-RHTCLCDGCVKY----FQQCPMCRQFVQ 57 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTT-TBCCSCTTHHHH----CSSCTTTCCCCC
T ss_pred CCCCCCCCCcCcCCCCEEEECC-CChhhhHHHHhc----CCCCCCCCcchh
Confidence 3457899999999999999998 999 99999984 368999998543
No 62
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.29 E-value=6e-08 Score=82.11 Aligned_cols=45 Identities=27% Similarity=0.670 Sum_probs=38.6
Q ss_pred CCCcccccccccccccceeccCCCCc-cchhHHHHHhhcCCCCCCCcCCCc
Q 035975 134 FPSELKCSLCNTLFKEAVMIPCCQHS-FCEKCIRLVLVEKARCPKCFSSKC 183 (685)
Q Consensus 134 LeeeLtCPIClelf~dPVtLpCCGHS-FC~~CI~~~lk~~~sCPvCR~~~~ 183 (685)
+.+...|+||++.+.+++++|| ||. ||..|+..+ ..||+||..+.
T Consensus 15 l~~~~~C~IC~~~~~~~v~~pC-gH~~~C~~C~~~~----~~CP~Cr~~i~ 60 (79)
T 2yho_A 15 LKEAMLCMVCCEEEINSTFCPC-GHTVCCESCAAQL----QSCPVCRSRVE 60 (79)
T ss_dssp HHHHTBCTTTSSSBCCEEEETT-CBCCBCHHHHTTC----SBCTTTCCBCC
T ss_pred CCCCCEeEEeCcccCcEEEECC-CCHHHHHHHHHhc----CcCCCCCchhh
Confidence 3456789999999999999998 999 999999865 38999998543
No 63
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.27 E-value=2.5e-07 Score=74.94 Aligned_cols=45 Identities=29% Similarity=0.535 Sum_probs=40.4
Q ss_pred cccccccccccccceec--cCCCCc-cchhHHHHHhhcCCCCCCCcCCC
Q 035975 137 ELKCSLCNTLFKEAVMI--PCCQHS-FCEKCIRLVLVEKARCPKCFSSK 182 (685)
Q Consensus 137 eLtCPIClelf~dPVtL--pCCGHS-FC~~CI~~~lk~~~sCPvCR~~~ 182 (685)
...|+||++.+.+++++ || ||. ||..|+..++.....||+||..+
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pC-gH~~~C~~C~~~~~~~~~~CPiCR~~i 54 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRT-GHLVTCFHCARRLKKAGASCPICKKEI 54 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTE-EEEEECHHHHHHHHHTTCBCTTTCCBC
T ss_pred CCCCcccCCcCCCeEEEecCC-CCHhHHHHHHHHHHHhCCcCCCcCchh
Confidence 56799999999999888 98 998 99999999988778999999753
No 64
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.16 E-value=1e-06 Score=78.85 Aligned_cols=44 Identities=23% Similarity=0.457 Sum_probs=38.6
Q ss_pred cccccccccccccc------------------eeccCCCCccchhHHHHHhhcCCCCCCCcCC
Q 035975 137 ELKCSLCNTLFKEA------------------VMIPCCQHSFCEKCIRLVLVEKARCPKCFSS 181 (685)
Q Consensus 137 eLtCPIClelf~dP------------------VtLpCCGHSFC~~CI~~~lk~~~sCPvCR~~ 181 (685)
+-.|+||++.|.++ +.++| +|.|+..||..|+.....||+||+.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C-~H~FH~~Ci~~Wl~~~~~CP~Cr~~ 98 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVC-NHAFHFHCISRWLKTRQVCPLDNRE 98 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETT-SCEEEHHHHHHHHTTCSBCSSSCSB
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeeccc-CcEECHHHHHHHHHcCCcCcCCCCc
Confidence 56799999999876 34677 9999999999999988999999974
No 65
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.16 E-value=2.6e-07 Score=97.95 Aligned_cols=45 Identities=29% Similarity=0.726 Sum_probs=39.7
Q ss_pred CCCCcccccccccccccceeccCCCCc-cchhHHHHHhhcCCCCCCCcCCC
Q 035975 133 NFPSELKCSLCNTLFKEAVMIPCCQHS-FCEKCIRLVLVEKARCPKCFSSK 182 (685)
Q Consensus 133 ~LeeeLtCPIClelf~dPVtLpCCGHS-FC~~CI~~~lk~~~sCPvCR~~~ 182 (685)
.+++++.|+||++.+.+|++++| ||+ ||..|+..+ ..||+||..+
T Consensus 291 ~l~~~~~C~IC~~~~~~~v~lpC-gH~~fC~~C~~~~----~~CP~CR~~i 336 (345)
T 3t6p_A 291 RLQEERTCKVCMDKEVSVVFIPC-GHLVVCQECAPSL----RKCPICRGII 336 (345)
T ss_dssp HHHTTCBCTTTSSSBCCEEEETT-CCEEECTTTGGGC----SBCTTTCCBC
T ss_pred hCcCCCCCCccCCcCCceEEcCC-CChhHhHHHHhcC----CcCCCCCCCc
Confidence 34567999999999999999998 999 999999866 6899999754
No 66
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.83 E-value=1.5e-05 Score=67.95 Aligned_cols=54 Identities=19% Similarity=0.399 Sum_probs=42.7
Q ss_pred CCccccccccccc--ccceeccCCC-----CccchhHHHHHhhcC--CCCCCCcCCCccccCCC
Q 035975 135 PSELKCSLCNTLF--KEAVMIPCCQ-----HSFCEKCIRLVLVEK--ARCPKCFSSKCRLEDLL 189 (685)
Q Consensus 135 eeeLtCPIClelf--~dPVtLpCCG-----HSFC~~CI~~~lk~~--~sCPvCR~~~~~~~~L~ 189 (685)
.++..|.||++.+ .+++++|| . |.|...||.+|+... ..||+|+..+.....+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC-~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~ 75 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPC-HCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLS 75 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSS-SCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSC
T ss_pred CCCCCCeEcCccccCCCeeEecc-ccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccC
Confidence 4567899999877 46888897 5 999999999999875 48999998654444443
No 67
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.73 E-value=4.3e-06 Score=76.43 Aligned_cols=44 Identities=23% Similarity=0.458 Sum_probs=0.4
Q ss_pred cccccccccccccce-----------------e-ccCCCCccchhHHHHHhhcCCCCCCCcCC
Q 035975 137 ELKCSLCNTLFKEAV-----------------M-IPCCQHSFCEKCIRLVLVEKARCPKCFSS 181 (685)
Q Consensus 137 eLtCPIClelf~dPV-----------------t-LpCCGHSFC~~CI~~~lk~~~sCPvCR~~ 181 (685)
+-.|+||++.|.++. . ++| +|.|+..||..|+.....||+||+.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C-~H~FH~~CI~~Wl~~~~~CP~Cr~~ 109 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVC-NHAFHFHCISRWLKTRQVCPLDNRE 109 (117)
T ss_dssp C--------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCc-CceEcHHHHHHHHHcCCcCCCCCCe
Confidence 457999999998742 2 466 9999999999999988899999974
No 68
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=97.15 E-value=0.00013 Score=50.18 Aligned_cols=21 Identities=38% Similarity=1.004 Sum_probs=18.9
Q ss_pred CCccccccCCCCcccccCCCC
Q 035975 361 KDRTCYMCGSPNHLIRDCPAA 381 (685)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~ 381 (685)
|+.+||.||.+.|++|+||..
T Consensus 1 ~~~~Cf~CG~~GH~ardC~~~ 21 (26)
T 1dsq_A 1 KGPVCFSCGKTGHIKRDCKEE 21 (26)
T ss_dssp CCCBCTTTCCBSSCTTTTTCC
T ss_pred CCCeeEeCCCCCcccccCCCc
Confidence 467899999999999999974
No 69
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=97.13 E-value=0.00038 Score=82.19 Aligned_cols=74 Identities=28% Similarity=0.410 Sum_probs=66.2
Q ss_pred cCCCCCcccccccccccccceeccCCC-CccchhHHHHHhhcCCCCCCCcCCCccccCCCccHHHHHHHHHHHhhcc
Q 035975 131 NGNFPSELKCSLCNTLFKEAVMIPCCQ-HSFCEKCIRLVLVEKARCPKCFSSKCRLEDLLPNVSLRQAIEHFLESQI 206 (685)
Q Consensus 131 ~e~LeeeLtCPIClelf~dPVtLpCCG-HSFC~~CI~~~lk~~~sCPvCR~~~~~~~~L~pN~~L~nLVe~~redq~ 206 (685)
..++++++.|||-++++.|||+++. | +||-+.+|.+|+....+||.-|. ......+.||..|+..|+.+...+.
T Consensus 885 ~~~iP~~F~cPIs~~lM~DPVilps-G~~TydR~~I~~wl~~~~tdP~Tr~-~L~~~~liPN~~Lk~~I~~w~~~~~ 959 (968)
T 3m62_A 885 YGDVPDEFLDPLMYTIMKDPVILPA-SKMNIDRSTIKAHLLSDSTDPFNRM-PLKLEDVTPNEELRQKILCFKKQKK 959 (968)
T ss_dssp HCCSCGGGBCTTTCSBCSSEEECTT-TCCEEEHHHHHHHHTTCCBCTTTCC-BCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred ccCCcHHhCCcchhhHHhCCeEcCC-CCEEECHHHHHHHHhcCCCCCCCCC-CCCcccccccHHHHHHHHHHHHHHH
Confidence 3678999999999999999999998 8 69999999999988889999997 4557789999999999999987654
No 70
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.74 E-value=0.0013 Score=53.17 Aligned_cols=22 Identities=41% Similarity=1.088 Sum_probs=19.1
Q ss_pred CCccccccCCCCcccccCCCCC
Q 035975 361 KDRTCYMCGSPNHLIRDCPAAL 382 (685)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~ 382 (685)
...+||.||-+.|+|++||...
T Consensus 6 ~~~~C~kCGk~GH~~k~Cp~~~ 27 (55)
T 2ysa_A 6 SGYTCFRCGKPGHYIKNCPTNG 27 (55)
T ss_dssp SSCCCTTTCCTTSCGGGCSGGG
T ss_pred CCCccccCCCcCcccccCCCCC
Confidence 3678999999999999999643
No 71
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.49 E-value=0.0016 Score=56.18 Aligned_cols=82 Identities=18% Similarity=0.397 Sum_probs=49.5
Q ss_pred Cccccccccc-cccccee--ccCCCCccchhHHHHHhhcCCCCCCCcCCCcc-ccCCCccHHHHHHHHHHHhhcccccCc
Q 035975 136 SELKCSLCNT-LFKEAVM--IPCCQHSFCEKCIRLVLVEKARCPKCFSSKCR-LEDLLPNVSLRQAIEHFLESQILISGS 211 (685)
Q Consensus 136 eeLtCPICle-lf~dPVt--LpCCGHSFC~~CI~~~lk~~~sCPvCR~~~~~-~~~L~pN~~L~nLVe~~redq~~iCs~ 211 (685)
+++.|+||.+ ++.+|+. +.| +|+||..|+..+......=..-+ +.. ...+ ..+...|
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C-~~~~C~~Cl~~~h~~~~~~~~h~--l~~~~~~~--------------~~~~~~C-- 62 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTC-EVSYCDECLKATHPNKKPFTGHR--LIEPIPDS--------------HIRGLMC-- 62 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTT-TEEECHHHHHHHSCSCSSSTTCC--BSSCCCSC--------------CSSCCCC--
T ss_pred CCCCCcCCCCCCCCCceEECCcC-ChHHhHHHCHHHhccCCccCCCe--eecccccc--------------CccCCcC--
Confidence 4689999996 4789998 898 99999999998433211000111 110 0100 0012233
Q ss_pred cCCCCCCCCchhhHHHHHhhhhhhhcc
Q 035975 212 ENAYHRYAPDGESGIQAKDVSCAVTNL 238 (685)
Q Consensus 212 Eh~~H~~~paee~C~eCk~l~CaL~~L 238 (685)
..|...+...+|.+|+.++|....+
T Consensus 63 --~~H~~e~l~~fC~~~~~~iC~~C~~ 87 (101)
T 2jun_A 63 --LEHEDEKVNMYCVTDDQLICALCKL 87 (101)
T ss_dssp --SSCSSSCCCEEETTTTEEECHHHHH
T ss_pred --cCcCCCcceEECCCCCCccchhcCC
Confidence 3455566778899999877766554
No 72
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.82 E-value=0.0058 Score=51.72 Aligned_cols=45 Identities=20% Similarity=0.544 Sum_probs=36.8
Q ss_pred cccccccccccccceeccCCCCccchhHHHHHhhcC--CCCCCCcCC
Q 035975 137 ELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEK--ARCPKCFSS 181 (685)
Q Consensus 137 eLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~~--~sCPvCR~~ 181 (685)
.-.|.||.++|..-..-.-|+|.|=..||.+|++.. ..||+|+..
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~ 61 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDY 61 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSC
T ss_pred CCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCc
Confidence 467999999998544332259999999999999877 789999974
No 73
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=95.43 E-value=0.0087 Score=51.76 Aligned_cols=22 Identities=32% Similarity=0.726 Sum_probs=19.7
Q ss_pred CCccccccCCCCcccccCCCCC
Q 035975 361 KDRTCYMCGSPNHLIRDCPAAL 382 (685)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~ 382 (685)
++..||.||...||.||||..-
T Consensus 45 ~~~~CYnCG~~GH~~rdC~~~r 66 (83)
T 3nyb_B 45 HTIYCYNCGGKGHFGDDCKEKR 66 (83)
T ss_dssp CCCBCSSSSCBSSCGGGCSSCC
T ss_pred CCCeecccCCCCcCcccCCccc
Confidence 3689999999999999999864
No 74
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=95.41 E-value=0.0079 Score=54.05 Aligned_cols=47 Identities=36% Similarity=0.751 Sum_probs=36.6
Q ss_pred ccccccccccc-ceeccCCCCccchhHHHHHhhc-CCCCCCCcCCCcccc
Q 035975 139 KCSLCNTLFKE-AVMIPCCQHSFCEKCIRLVLVE-KARCPKCFSSKCRLE 186 (685)
Q Consensus 139 tCPIClelf~d-PVtLpCCGHSFC~~CI~~~lk~-~~sCPvCR~~~~~~~ 186 (685)
.|++|.-.+.. -.++|| .|.||..|+..|.+. ...||.|+..+..++
T Consensus 3 fC~~C~~Pi~iygRmIPC-kHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPC-KHVFCYDCAILHEKKGDKMCPGCSDPVQRIE 51 (101)
T ss_dssp BCTTTCSBCSEEEEEETT-CCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred ecCccCCCeEEEeeeccc-cccHHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence 58889877764 456787 999999999998865 478999998654444
No 75
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=95.04 E-value=0.022 Score=45.98 Aligned_cols=47 Identities=19% Similarity=0.458 Sum_probs=36.8
Q ss_pred CCcccccccccccccceeccC-CCC---ccchhHHHHHhhc--CCCCCCCcCC
Q 035975 135 PSELKCSLCNTLFKEAVMIPC-CQH---SFCEKCIRLVLVE--KARCPKCFSS 181 (685)
Q Consensus 135 eeeLtCPIClelf~dPVtLpC-CGH---SFC~~CI~~~lk~--~~sCPvCR~~ 181 (685)
.+...|.||++-..++..+|| |.+ .|=..||.+|+.. ...||+|+..
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~ 56 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVV 56 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCB
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCe
Confidence 346789999998888888897 233 5667899999975 4689999974
No 76
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=94.89 E-value=0.01 Score=41.62 Aligned_cols=21 Identities=43% Similarity=0.882 Sum_probs=18.7
Q ss_pred cCCccccccCCCCcccccCCC
Q 035975 360 RKDRTCYMCGSPNHLIRDCPA 380 (685)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~ 380 (685)
|+...||.||-+.|++|+||.
T Consensus 4 r~~~~C~nCgk~GH~ar~C~~ 24 (29)
T 1nc8_A 4 RKVIRCWNCGKEGHSARQCRA 24 (29)
T ss_dssp CCCCBCTTTSCBSSCGGGCCS
T ss_pred CCCCEEEECCccccCHhHCcc
Confidence 456789999999999999985
No 77
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=94.37 E-value=0.017 Score=46.76 Aligned_cols=25 Identities=24% Similarity=0.608 Sum_probs=20.4
Q ss_pred CCcCCccccccCCCCcccccCCCCC
Q 035975 358 RNRKDRTCYMCGSPNHLIRDCPAAL 382 (685)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (685)
+....-.||.||..+|++||||...
T Consensus 19 ~~~~~~~C~~Cge~GH~ardCp~~~ 43 (56)
T 1u6p_A 19 SQLDRDQCAYCKEKGHWAKDCPKKP 43 (56)
T ss_dssp TTCCTTBCSSSCCBSSCGGGCTTCC
T ss_pred CCCCCCcceeCCCCCcccccCcCCc
Confidence 3333678999999999999999843
No 78
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=94.34 E-value=0.015 Score=43.02 Aligned_cols=19 Identities=37% Similarity=1.017 Sum_probs=16.8
Q ss_pred CccccccCCCCcccccCCC
Q 035975 362 DRTCYMCGSPNHLIRDCPA 380 (685)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~ 380 (685)
...||.||.+.|++|+||.
T Consensus 21 ~~~C~~Cg~~GH~~~~C~~ 39 (39)
T 2a51_A 21 QEGCWNCGSKEHRFAQCPK 39 (39)
T ss_dssp CSSCTTTCCSSSCTTTSCC
T ss_pred CCccccCCCCCCccCcCcC
Confidence 4689999999999999984
No 79
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=94.12 E-value=0.023 Score=43.13 Aligned_cols=22 Identities=27% Similarity=0.706 Sum_probs=19.6
Q ss_pred CccccccCCCCcccccCCCCCC
Q 035975 362 DRTCYMCGSPNHLIRDCPAALS 383 (685)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~ 383 (685)
.-.||.||-.+|++|+||....
T Consensus 10 ~~~C~~Cgk~GH~ardCP~~~~ 31 (40)
T 1a6b_B 10 RDQCAYCKEKGHWAKDCPKKPR 31 (40)
T ss_dssp SSSCSSSCCTTCCTTSCSSSCC
T ss_pred CCeeeECCCCCcchhhCcCCcc
Confidence 7789999999999999998543
No 80
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=94.10 E-value=0.02 Score=51.80 Aligned_cols=23 Identities=30% Similarity=0.667 Sum_probs=20.1
Q ss_pred CcCCccccccCCCCcccccCCCC
Q 035975 359 NRKDRTCYMCGSPNHLIRDCPAA 381 (685)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~ 381 (685)
.....+||.||...||+||||.+
T Consensus 102 ~~~~~~Cy~Cg~~GH~a~dCp~~ 124 (124)
T 2lli_A 102 PFHTIYCYNCGGKGHFGDDCKEK 124 (124)
T ss_dssp CCCCCCTTTTSSSCTTTTTSCCC
T ss_pred CCCCCCcCCCCCCCcCcccCcCC
Confidence 34578999999999999999974
No 81
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=94.09 E-value=0.022 Score=45.63 Aligned_cols=22 Identities=18% Similarity=0.477 Sum_probs=19.2
Q ss_pred CccccccCCCCcccccCCCCCC
Q 035975 362 DRTCYMCGSPNHLIRDCPAALS 383 (685)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~ 383 (685)
..+||.||.+.|++|+||....
T Consensus 30 ~~~C~~Cg~~GH~ar~C~~~~~ 51 (60)
T 1cl4_A 30 PGLCPRCKRGKHWANECKSKTD 51 (60)
T ss_dssp CCSCSSCSSCSSCSTTCCCTTS
T ss_pred CcceeECCCCCCccCcCCCccc
Confidence 5789999999999999998653
No 82
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=94.07 E-value=0.016 Score=62.07 Aligned_cols=47 Identities=19% Similarity=0.500 Sum_probs=36.0
Q ss_pred CCccccccccccccc----cee----ccCCCCccchhHHHHHhhcC-----------CCCCCCcCCC
Q 035975 135 PSELKCSLCNTLFKE----AVM----IPCCQHSFCEKCIRLVLVEK-----------ARCPKCFSSK 182 (685)
Q Consensus 135 eeeLtCPIClelf~d----PVt----LpCCGHSFC~~CI~~~lk~~-----------~sCPvCR~~~ 182 (685)
.....|+||+..+.+ |.. ..| +|.|-..||.+|+... ..||.|+..+
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C-~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pI 371 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKC-VLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKL 371 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTC-CCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEE
T ss_pred cCCccCcccceeecCCCCCccccccCCcc-CCccchHHHHHHHHhCCCccccccccCCCCCCCCCcC
Confidence 346789999999886 321 245 9999999999999742 2699999743
No 83
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=93.58 E-value=0.028 Score=47.49 Aligned_cols=19 Identities=32% Similarity=0.938 Sum_probs=10.6
Q ss_pred CccccccCCCCcccccCCC
Q 035975 362 DRTCYMCGSPNHLIRDCPA 380 (685)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~ 380 (685)
...||.||.+.|++++||.
T Consensus 24 ~~~C~~Cg~~GH~a~~C~~ 42 (74)
T 2li8_A 24 GDRCYNCGGLDHHAKECKL 42 (74)
T ss_dssp TSCCTTTCCSSSCTTTCSS
T ss_pred CCcccccCCcCcCcccCCC
Confidence 3445555555555555553
No 84
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=93.56 E-value=0.027 Score=41.21 Aligned_cols=19 Identities=26% Similarity=1.004 Sum_probs=15.2
Q ss_pred CccccccCCCCcccccCCC
Q 035975 362 DRTCYMCGSPNHLIRDCPA 380 (685)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~ 380 (685)
...||.||.+.|++|+||.
T Consensus 19 ~~~C~~Cg~~GH~a~~C~~ 37 (37)
T 2bl6_A 19 PKVCFKCKQPGHFSKQCRS 37 (37)
T ss_dssp BTTCSSCCCTTGGGGTTCC
T ss_pred cCeEccCCCcCCccCcCcC
Confidence 3678888888888888874
No 85
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=93.41 E-value=0.022 Score=49.25 Aligned_cols=21 Identities=33% Similarity=0.765 Sum_probs=17.1
Q ss_pred CCccccccCCCCcccccCCCC
Q 035975 361 KDRTCYMCGSPNHLIRDCPAA 381 (685)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~ 381 (685)
|...||+||++.|+.++||..
T Consensus 4 k~~~C~~Cg~~GH~~~~Cp~~ 24 (83)
T 3nyb_B 4 KKVQCTLCKSKKHSKERCPSI 24 (83)
T ss_dssp ---CCSSSCCSSSCGGGCGGG
T ss_pred ccCCCCCCCCCCCccccCCCc
Confidence 577899999999999999974
No 86
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=93.33 E-value=0.03 Score=45.28 Aligned_cols=22 Identities=45% Similarity=1.081 Sum_probs=14.8
Q ss_pred cCCccccccCCCCcccccCCCC
Q 035975 360 RKDRTCYMCGSPNHLIRDCPAA 381 (685)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~ 381 (685)
|+...||.||.+.|++|+||..
T Consensus 2 r~~~~C~~Cg~~GH~a~~C~~~ 23 (61)
T 2ihx_A 2 RARGLCYTCGSPGHYQAQCPKK 23 (61)
T ss_dssp CCTTBCSSSCCBTCCGGGCTTT
T ss_pred CCCCcccccCCCCeehhhCcCC
Confidence 3445677777777777777664
No 87
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=93.28 E-value=0.031 Score=44.03 Aligned_cols=19 Identities=32% Similarity=1.057 Sum_probs=13.4
Q ss_pred CccccccCCCCcccccCCC
Q 035975 362 DRTCYMCGSPNHLIRDCPA 380 (685)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~ 380 (685)
...||.||.+.|++|+||.
T Consensus 33 ~~~C~~Cg~~GH~~~~C~~ 51 (55)
T 1a1t_A 33 KKGCWKCGKEGHQMKDCTE 51 (55)
T ss_dssp CCBCTTTCCBSSCGGGCSS
T ss_pred CCEeCCCCCcCCccCCCcC
Confidence 3567777777777777775
No 88
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=93.26 E-value=0.031 Score=40.85 Aligned_cols=18 Identities=56% Similarity=1.258 Sum_probs=16.5
Q ss_pred cccccCCCCcccccCCCC
Q 035975 364 TCYMCGSPNHLIRDCPAA 381 (685)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~ 381 (685)
.||.||.+.|++|+||..
T Consensus 2 ~C~~Cg~~GH~~~~C~~~ 19 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRAP 19 (37)
T ss_dssp CBSSSCCSSCCTTTSSCB
T ss_pred cccccCCCCcchhhCcCc
Confidence 699999999999999963
No 89
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=93.14 E-value=0.033 Score=43.19 Aligned_cols=20 Identities=40% Similarity=0.848 Sum_probs=14.7
Q ss_pred CCccccccCCCCcccccCCC
Q 035975 361 KDRTCYMCGSPNHLIRDCPA 380 (685)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~ 380 (685)
+...||.||.+.|++++||.
T Consensus 5 r~~~C~~Cg~~GH~a~~C~~ 24 (49)
T 2ec7_A 5 KVIRCWNCGKEGHSARQCRA 24 (49)
T ss_dssp CCCBCTTTCCBTCCTTTCCC
T ss_pred CcCeeeecCCCCcChhhCcC
Confidence 35667777777777777776
No 90
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=93.05 E-value=0.017 Score=46.26 Aligned_cols=21 Identities=24% Similarity=0.861 Sum_probs=0.0
Q ss_pred CccccccCCCCcccccCCCCC
Q 035975 362 DRTCYMCGSPNHLIRDCPAAL 382 (685)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~ 382 (685)
++.||.||.+.|++|+||...
T Consensus 1 G~~Cf~Cg~~GH~a~~C~~~~ 21 (60)
T 1cl4_A 1 GGSCFKCGKKGHFAKNCHEHA 21 (60)
T ss_dssp ---------------------
T ss_pred CCccccCCCCCcCHhhCcCCC
Confidence 368999999999999999854
No 91
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=92.99 E-value=0.037 Score=42.91 Aligned_cols=20 Identities=30% Similarity=1.027 Sum_probs=17.7
Q ss_pred CccccccCCCCcccccCCCC
Q 035975 362 DRTCYMCGSPNHLIRDCPAA 381 (685)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~ 381 (685)
...||.||.+.|++|+||..
T Consensus 27 ~~~C~~Cg~~GH~~~~C~~~ 46 (49)
T 2ec7_A 27 RQGCWKCGKTGHVMAKCPER 46 (49)
T ss_dssp CCSCSSSCCSSCCGGGCCSS
T ss_pred CCeeCcCCCcCCccCCCcCC
Confidence 45799999999999999963
No 92
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=92.36 E-value=0.047 Score=42.96 Aligned_cols=22 Identities=36% Similarity=0.980 Sum_probs=19.3
Q ss_pred cCCccccccCCCCcccccCCCC
Q 035975 360 RKDRTCYMCGSPNHLIRDCPAA 381 (685)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~ 381 (685)
++...||.||.+.|++++||..
T Consensus 10 ~~~~~C~~Cg~~GH~a~~C~~~ 31 (55)
T 1a1t_A 10 RKTVKCFNCGKEGHIAKNCRAP 31 (55)
T ss_dssp GGTCBCTTTCCBSSCGGGCSSC
T ss_pred CCCcceeeeCCCCcChhhcCCC
Confidence 4467899999999999999874
No 93
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=92.33 E-value=0.051 Score=51.25 Aligned_cols=20 Identities=35% Similarity=0.936 Sum_probs=11.2
Q ss_pred CccccccCCCCcccccCCCC
Q 035975 362 DRTCYMCGSPNHLIRDCPAA 381 (685)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~ 381 (685)
...||.||.+.|++|+||..
T Consensus 119 ~~~C~~Cg~~GH~~r~Cp~~ 138 (148)
T 3ts2_A 119 PKKCHFCQSINHMVASCPLK 138 (148)
T ss_dssp CCCCTTTCCSSCCGGGCTTT
T ss_pred CCcccccCCcCCEeccCcCC
Confidence 34555555555555555554
No 94
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=92.32 E-value=0.046 Score=44.16 Aligned_cols=21 Identities=19% Similarity=0.543 Sum_probs=18.6
Q ss_pred CccccccCCCCcccccCCCCC
Q 035975 362 DRTCYMCGSPNHLIRDCPAAL 382 (685)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~ 382 (685)
..+||.||.+.|++|+||..-
T Consensus 30 ~~~C~~Cg~~GH~ar~C~~~~ 50 (61)
T 2ihx_A 30 RERCQLCNGMGHNAKQCRKRD 50 (61)
T ss_dssp CSBCTTTCCBSSCGGGCCCCC
T ss_pred CCeeCCCCCCCCCcCCCcCCC
Confidence 468999999999999999754
No 95
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=91.85 E-value=0.054 Score=40.03 Aligned_cols=18 Identities=44% Similarity=1.099 Sum_probs=16.6
Q ss_pred cccccCCCCcccccCCCC
Q 035975 364 TCYMCGSPNHLIRDCPAA 381 (685)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~ 381 (685)
.||.||.+.|++++||..
T Consensus 2 ~C~~Cg~~GH~a~~C~~~ 19 (39)
T 2a51_A 2 TCFNCGKPGHTARMCRQP 19 (39)
T ss_dssp BCTTTCCBSSCTTTCCSC
T ss_pred eeeccCCCCcccccCCCC
Confidence 699999999999999964
No 96
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.85 E-value=0.056 Score=44.06 Aligned_cols=21 Identities=29% Similarity=0.827 Sum_probs=17.3
Q ss_pred CccccccCCCCcccccCCCCC
Q 035975 362 DRTCYMCGSPNHLIRDCPAAL 382 (685)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~ 382 (685)
...||.||.+.|++|+||...
T Consensus 29 ~~~C~~Cg~~GH~ar~Cp~~~ 49 (63)
T 2cqf_A 29 PKKCHFCQSISHMVASCPLKA 49 (63)
T ss_dssp SSCCTTTCCSSSCTTTCTGGG
T ss_pred CCccCCcCCcCCccCcCCCcc
Confidence 578999999999999998753
No 97
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=90.31 E-value=0.11 Score=43.79 Aligned_cols=26 Identities=27% Similarity=0.789 Sum_probs=21.7
Q ss_pred CCccccccCCCCcccccCCCCCCCCc
Q 035975 361 KDRTCYMCGSPNHLIRDCPAALSPNP 386 (685)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (685)
+...||.||.+.|++|+||.....++
T Consensus 45 ~~~~C~~Cg~~GH~ar~Cp~~~~~~p 70 (74)
T 2li8_A 45 QPKKCHFCQSISHMVASCPLKAQQGP 70 (74)
T ss_dssp CCCCCTTTCCTTSCGGGCTTGGGTCC
T ss_pred CCCccCCcCCcCCccCcCcCCcCCCC
Confidence 36899999999999999998664444
No 98
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.76 E-value=0.12 Score=42.14 Aligned_cols=20 Identities=30% Similarity=0.896 Sum_probs=17.7
Q ss_pred CccccccCCCCcccccCCCC
Q 035975 362 DRTCYMCGSPNHLIRDCPAA 381 (685)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~ 381 (685)
...||.||.+.|++++||..
T Consensus 7 ~~~C~~Cg~~GH~a~~C~~~ 26 (63)
T 2cqf_A 7 GDRCYNCGGLDHHAKECKLP 26 (63)
T ss_dssp CCCCSSSCCSSSCTTTCCSC
T ss_pred CCcccccCCCCcChhhCCCC
Confidence 36799999999999999964
No 99
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=88.56 E-value=0.18 Score=47.52 Aligned_cols=20 Identities=30% Similarity=0.896 Sum_probs=18.0
Q ss_pred CccccccCCCCcccccCCCC
Q 035975 362 DRTCYMCGSPNHLIRDCPAA 381 (685)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~ 381 (685)
...||.||.+.|++|+||..
T Consensus 97 ~~~C~~Cg~~GH~a~~C~~~ 116 (148)
T 3ts2_A 97 GDRCYNCGGLDHHAKECKLP 116 (148)
T ss_dssp SCCCTTTCCSSCCGGGCCSC
T ss_pred CCcccEeCCccchhhhCCCC
Confidence 56899999999999999973
No 100
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=84.70 E-value=0.34 Score=43.68 Aligned_cols=20 Identities=30% Similarity=0.750 Sum_probs=16.7
Q ss_pred CccccccCCCCcccccCCCC
Q 035975 362 DRTCYMCGSPNHLIRDCPAA 381 (685)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~ 381 (685)
...||.||.+.|++|+||..
T Consensus 64 ~~~C~~Cg~~GH~~~~Cp~~ 83 (124)
T 2lli_A 64 KVQCTLCKSKKHSKERCPSI 83 (124)
T ss_dssp CCSSSSSCSSCCCTTTCCCS
T ss_pred CccCCCCCcCCcchhhCCCc
Confidence 46799999999999999864
No 101
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=82.72 E-value=1.1 Score=48.43 Aligned_cols=65 Identities=20% Similarity=0.342 Sum_probs=48.8
Q ss_pred CcccccccccccccceeccCCCCccchhH--HHHHhhc--CCCCCCCcCCCccccCCCccHHHHHHHHHH
Q 035975 136 SELKCSLCNTLFKEAVMIPCCQHSFCEKC--IRLVLVE--KARCPKCFSSKCRLEDLLPNVSLRQAIEHF 201 (685)
Q Consensus 136 eeLtCPIClelf~dPVtLpCCGHSFC~~C--I~~~lk~--~~sCPvCR~~~~~~~~L~pN~~L~nLVe~~ 201 (685)
-.|.|||-+..+..|+.-.-|.|.-|..- +...... ...||+|.+ .....+|..+..+..++...
T Consensus 248 vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k-~~~~~dL~ID~~~~~IL~~~ 316 (371)
T 3i2d_A 248 MSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQI-DIALENLAISEFVDDILQNC 316 (371)
T ss_dssp EESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCC-BCCGGGEEEBHHHHHHHTTS
T ss_pred EeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCc-ccCHHHeeEcHHHHHHHHhc
Confidence 46999999999999998765699966554 2232222 248999996 67789999999988887543
No 102
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=82.39 E-value=0.61 Score=41.64 Aligned_cols=46 Identities=28% Similarity=0.699 Sum_probs=37.0
Q ss_pred CCCcccccccccccccceeccCCCCccchhHHHHHhhcCCCCCCCcCC
Q 035975 134 FPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEKARCPKCFSS 181 (685)
Q Consensus 134 LeeeLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~~~sCPvCR~~ 181 (685)
+---+.|..|- |.+--.+.|..|-+|..|++..+..+..||+|...
T Consensus 25 ~~G~~nCKsCW--f~~k~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~p 70 (99)
T 2ko5_A 25 HLGPQFCKSCW--FENKGLVECNNHYLCLNCLTLLLSVSNRCPICKMP 70 (99)
T ss_dssp CSCCCCCCSSC--SCCSSEEECSSCEEEHHHHHHTCSSSSEETTTTEE
T ss_pred ccCcccChhhc--cccCCeeeecchhhHHHHHHHHHhhccCCcccCCc
Confidence 34457788885 44446677889999999999999988999999874
No 103
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=81.05 E-value=0.99 Score=45.49 Aligned_cols=45 Identities=20% Similarity=0.544 Sum_probs=36.4
Q ss_pred cccccccccccccceeccCCCCccchhHHHHHhhcC--CCCCCCcCC
Q 035975 137 ELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLVEK--ARCPKCFSS 181 (685)
Q Consensus 137 eLtCPIClelf~dPVtLpCCGHSFC~~CI~~~lk~~--~sCPvCR~~ 181 (685)
-..|.||.+++..-+.-+-|++.|=..|+..|++.. ..||.|+..
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~ 226 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDY 226 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCB
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 567999999998655544359999999999999765 489999963
No 104
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=80.13 E-value=1.5 Score=47.12 Aligned_cols=66 Identities=18% Similarity=0.288 Sum_probs=49.3
Q ss_pred CCCcccccccccccccceeccCCCCccchhHH--HHHhhc--CCCCCCCcCCCccccCCCccHHHHHHHHH
Q 035975 134 FPSELKCSLCNTLFKEAVMIPCCQHSFCEKCI--RLVLVE--KARCPKCFSSKCRLEDLLPNVSLRQAIEH 200 (685)
Q Consensus 134 LeeeLtCPIClelf~dPVtLpCCGHSFC~~CI--~~~lk~--~~sCPvCR~~~~~~~~L~pN~~L~nLVe~ 200 (685)
+.-.|.|||-+..+..|+...-|.|.-|..-. ...... ...||+|.+ .....+|..+..+..++..
T Consensus 212 ~~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k-~~~~~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 212 LRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDK-KAAYESLILDGLFMEILND 281 (360)
T ss_dssp EEEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCS-BCCGGGEEEBHHHHHHHTT
T ss_pred eEEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCc-ccCHHHeEEcHHHHHHHHh
Confidence 34468999999999999987656999665433 232222 248999997 6778899999999888764
No 105
>4gyx_A Type III collagen fragment in A HOST peptide STAB the cysteine knot; collagen triple helix, type III collagen cysteine knot, BLOO clotting; 1.49A {Homo sapiens}
Probab=75.19 E-value=2.6 Score=29.83 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=11.7
Q ss_pred cCCCCCccCCCCCCCCCC
Q 035975 416 YGNHGMMPFNATMAPTTQ 433 (685)
Q Consensus 416 yg~~gmmpf~~~~~p~~~ 433 (685)
-|+||+|.| |.-|.+|
T Consensus 9 rgqpgvmgf--pgppgpp 24 (31)
T 4gyx_A 9 RGQPGVMGF--PGPPGPP 24 (31)
T ss_dssp CCCCCCCCC--CCCCCCC
T ss_pred CCCCccccC--CCCCCCC
Confidence 578999999 6555543
No 106
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=53.87 E-value=16 Score=32.02 Aligned_cols=37 Identities=24% Similarity=0.695 Sum_probs=30.3
Q ss_pred CCcccccccccccccceeccCC---CCccchhHHHHHhhc
Q 035975 135 PSELKCSLCNTLFKEAVMIPCC---QHSFCEKCIRLVLVE 171 (685)
Q Consensus 135 eeeLtCPIClelf~dPVtLpCC---GHSFC~~CI~~~lk~ 171 (685)
...|.|.+|.+-|.+.-.+.|= .|.||..|-...++.
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 4579999999999987766541 689999999988874
No 107
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=38.66 E-value=4.3 Score=29.85 Aligned_cols=18 Identities=17% Similarity=0.340 Sum_probs=13.2
Q ss_pred Ccccccccccccccceec
Q 035975 136 SELKCSLCNTLFKEAVMI 153 (685)
Q Consensus 136 eeLtCPIClelf~dPVtL 153 (685)
+.+.||||+..|..+-.|
T Consensus 4 EGFiCP~C~~~l~s~~~L 21 (34)
T 3mjh_B 4 EGFICPQCMKSLGSADEL 21 (34)
T ss_dssp EEEECTTTCCEESSHHHH
T ss_pred cccCCcHHHHHcCCHHHH
Confidence 468888888888776544
No 108
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=37.07 E-value=55 Score=33.22 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=8.9
Q ss_pred CCCCcccccCCCCCC-CCCCCCC
Q 035975 382 LSPNPMLQQGALRGH-APPFWNG 403 (685)
Q Consensus 382 ~~~~~m~~~~~~~g~-~~~~~~g 403 (685)
.+++.|.....-+|+ +||.|--
T Consensus 174 ~~~~~~~~~~~~~g~~~p~~g~~ 196 (231)
T 3pgw_B 174 GPPPPMGRGAPPPGMMGPPPGMR 196 (231)
T ss_pred CCCCccccCCCCCcccCCCCCCC
Confidence 333443333333343 5554443
No 109
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=36.81 E-value=21 Score=31.56 Aligned_cols=46 Identities=13% Similarity=0.124 Sum_probs=35.7
Q ss_pred cccccccccccc---cceeccCCCCccchhHHHHHhhcCCCCCCCcCCCc
Q 035975 137 ELKCSLCNTLFK---EAVMIPCCQHSFCEKCIRLVLVEKARCPKCFSSKC 183 (685)
Q Consensus 137 eLtCPIClelf~---dPVtLpCCGHSFC~~CI~~~lk~~~sCPvCR~~~~ 183 (685)
-|+|..|...|. ......- |..||..|..+.+.....|-.|...+.
T Consensus 32 CF~C~~C~~~L~~~~~~~~~~~-g~~yC~~cy~~~f~~~~~C~~C~~~I~ 80 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSYTKS-GMILCRNDYIRLFGNSGAGGSGGHMGS 80 (122)
T ss_dssp HHCCSSSCCCTTTSEECCEEET-TEEECHHHHHHHHCCCCSSSCSSCCSC
T ss_pred CCCcCCCCCcccccCCeEEEEC-CeeecHHHHHHHcCCCCccccCCCCcC
Confidence 489999999996 3455566 889999999887755458999987443
No 110
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=27.22 E-value=20 Score=34.00 Aligned_cols=46 Identities=20% Similarity=0.369 Sum_probs=35.4
Q ss_pred Cccccccccccccc---ceeccCCCCccchhHHHHHhhcCCCCCCCcCCC
Q 035975 136 SELKCSLCNTLFKE---AVMIPCCQHSFCEKCIRLVLVEKARCPKCFSSK 182 (685)
Q Consensus 136 eeLtCPIClelf~d---PVtLpCCGHSFC~~CI~~~lk~~~sCPvCR~~~ 182 (685)
+-|.|..|...|.. +....- |..||..|..+.+.....|..|.+.+
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~~~~-g~~yC~~cy~~~~~~~~~C~~C~~~I 79 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSYTKS-GMILCRNDYIRLFGNSGACSACGQSI 79 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEEEET-TEEECHHHHHHHHSCCEECTTTCCEE
T ss_pred cCcccCCCCcccccCCceEEEeC-CccccccccccccccCCccccCCCcc
Confidence 46899999998875 566666 89999999987764333799999743
No 111
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=25.85 E-value=29 Score=30.49 Aligned_cols=46 Identities=15% Similarity=0.378 Sum_probs=35.4
Q ss_pred Ccccccccccccc---cceeccCCCCccchhHHHHHhhcCCCCCCCcCCC
Q 035975 136 SELKCSLCNTLFK---EAVMIPCCQHSFCEKCIRLVLVEKARCPKCFSSK 182 (685)
Q Consensus 136 eeLtCPIClelf~---dPVtLpCCGHSFC~~CI~~~lk~~~sCPvCR~~~ 182 (685)
+-|+|..|...|. .+....- |..||..|..+.+.....|..|...+
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~-g~~yC~~~y~~~~~~~~~C~~C~~~I 76 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKL-GRKLCRRDYLRLFGQDGLCASCDKRI 76 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEET-TEEECHHHHHHHHCCCEECTTTCCEE
T ss_pred HHcccCcCCCccccCCCeEEEEC-CEEeecCchhhhCCCccChhhcCCcc
Confidence 4689999999885 3555666 89999999988765444899998743
No 112
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=25.31 E-value=9.7 Score=39.92 Aligned_cols=45 Identities=16% Similarity=0.308 Sum_probs=34.2
Q ss_pred CCcccccccccccccceecc----CCC--CccchhHHHHHhhcCCCCCCCcC
Q 035975 135 PSELKCSLCNTLFKEAVMIP----CCQ--HSFCEKCIRLVLVEKARCPKCFS 180 (685)
Q Consensus 135 eeeLtCPIClelf~dPVtLp----CCG--HSFC~~CI~~~lk~~~sCPvCR~ 180 (685)
...-.||||.....-.++.. - | +-+|..|-+.|--....||.|..
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~-G~R~l~Cs~C~t~W~~~R~~C~~Cg~ 230 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKET-GLRYLSCSLCACEWHYVRIKCSHCEE 230 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----C-CEEEEEETTTCCEEECCTTSCSSSCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCC-CcEEEEeCCCCCEEeecCcCCcCCCC
Confidence 45689999999776555442 2 4 35799999998777789999985
No 113
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=23.55 E-value=45 Score=29.13 Aligned_cols=44 Identities=14% Similarity=0.438 Sum_probs=33.6
Q ss_pred Cccccccccccccc-ceeccCCCCccchhHHHHHhhcCCCCCCCcCCC
Q 035975 136 SELKCSLCNTLFKE-AVMIPCCQHSFCEKCIRLVLVEKARCPKCFSSK 182 (685)
Q Consensus 136 eeLtCPIClelf~d-PVtLpCCGHSFC~~CI~~~lk~~~sCPvCR~~~ 182 (685)
+-|.|..|...|.. +....- |..||..|..+.+ ...|..|.+.+
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~-g~~yC~~cy~~~~--~~~C~~C~~~I 73 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVN-DKPVCKPCYVKNH--AVVCQGCHNAI 73 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEET-TEEEEHHHHHHHS--CCBCTTTCSBC
T ss_pred CCCCcCCCCCCCCcCEEEeEC-CEEechHHhCcCc--CccCcccCCcC
Confidence 35899999998875 444556 8899999997654 46899999743
No 114
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.67 E-value=41 Score=26.92 Aligned_cols=20 Identities=0% Similarity=-0.051 Sum_probs=16.9
Q ss_pred ccCccCCCCCCCcccccccc
Q 035975 65 IDTTRTSEPHNTGCQKLEAS 84 (685)
Q Consensus 65 ~RvkRSSgip~S~lqkVess 84 (685)
.++++++|||++|++.|+..
T Consensus 35 ~r~k~~tGiP~~fl~~v~~p 54 (55)
T 2ysa_A 35 PRIKKSTGIPRSFMMEVKDP 54 (55)
T ss_dssp SCSCCCSSCSCSSSCCCCCC
T ss_pred ccccCCCCCCccceeccCCC
Confidence 46789999999999998753
No 115
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=21.96 E-value=15 Score=30.92 Aligned_cols=34 Identities=21% Similarity=0.613 Sum_probs=22.6
Q ss_pred cccccc--ccccccc---ceeccC-------CCCccchhHHHHHhh
Q 035975 137 ELKCSL--CNTLFKE---AVMIPC-------CQHSFCEKCIRLVLV 170 (685)
Q Consensus 137 eLtCPI--Clelf~d---PVtLpC-------CGHSFC~~CI~~~lk 170 (685)
...||- |...+.. ...+.| |++.||..|...|..
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE 70 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC
Confidence 567887 8776531 122333 599999999977644
No 116
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=21.37 E-value=24 Score=25.86 Aligned_cols=10 Identities=40% Similarity=1.159 Sum_probs=8.5
Q ss_pred cccccCCCCc
Q 035975 364 TCYMCGSPNH 373 (685)
Q Consensus 364 ~~~~~~~~~~ 373 (685)
.|+.||||+-
T Consensus 2 lC~~C~~peT 11 (36)
T 1k81_A 2 ICRECGKPDT 11 (36)
T ss_dssp CCSSSCSCEE
T ss_pred CCcCCCCCCc
Confidence 6999999974
Done!