BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035976
(203 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Query: 75 FNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEA 134
+ S+N L +S HP L+ LDLS NAF+ + + G++ QLK L L
Sbjct: 74 LDLSHNKLVKISC------HPTVNLKHLDLSFNAFDALPICKEF---GNMSQLKFLGLST 124
Query: 135 NHF-NDSILP 143
H S+LP
Sbjct: 125 THLEKSSVLP 134
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Query: 85 VSLMNFSLFHPF----EELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDS 140
VS NFS PF LQ LD+S N G + RA + +LK+LN+ +N F
Sbjct: 204 VSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFS-RAIST---CTELKLLNISSNQFVGP 259
Query: 141 ILP 143
I P
Sbjct: 260 IPP 262
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 95 PFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYXXXXXXXXXX 154
P + LQ L L+ N F G + +G+ L L+L NHF ++ P+
Sbjct: 264 PLKSLQYLSLAENKFTGEIPDFL---SGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 320
Query: 155 XXRENNIEGSRTIE 168
NN G ++
Sbjct: 321 ALSSNNFSGELPMD 334
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Query: 85 VSLMNFSLFHPF----EELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDS 140
VS NFS PF LQ LD+S N G + RA + +LK+LN+ +N F
Sbjct: 207 VSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFS-RAIST---CTELKLLNISSNQFVGP 262
Query: 141 ILP 143
I P
Sbjct: 263 IPP 265
Score = 26.9 bits (58), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 95 PFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYXXXXXXXXXX 154
P + LQ L L+ N F G + +G+ L L+L NHF ++ P+
Sbjct: 267 PLKSLQYLSLAENKFTGEIPDFL---SGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 323
Query: 155 XXRENNIEGSRTIE 168
NN G ++
Sbjct: 324 ALSSNNFSGELPMD 337
>pdb|1JV2|B Chain B, Crystal Structure Of The Extracellular Segment Of Integrin
Alphavbeta3
pdb|1L5G|B Chain B, Crystal Structure Of The Extracellular Segment Of Integrin
Avb3 In Complex With An Arg-Gly-Asp Ligand
pdb|1M1X|B Chain B, Crystal Structure Of The Extracellular Segment Of Integrin
Alpha Vbeta3 Bound To Mn2+
pdb|1U8C|B Chain B, A Novel Adaptation Of The Integrin Psi Domain Revealed
From Its Crystal Structure
Length = 692
Score = 26.9 bits (58), Expect = 6.8, Method: Composition-based stats.
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 48 CSNDWDGVKCNATTR 62
C +DW G CN TTR
Sbjct: 549 CDSDWTGYYCNCTTR 563
>pdb|3IJE|B Chain B, Crystal Structure Of The Complete Integrin Alhavbeta3
Ectodomain Plus An Alpha/beta Transmembrane Fragment
Length = 695
Score = 26.9 bits (58), Expect = 6.8, Method: Composition-based stats.
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 48 CSNDWDGVKCNATTR 62
C +DW G CN TTR
Sbjct: 549 CDSDWTGYYCNCTTR 563
>pdb|4G1M|B Chain B, Re-Refinement Of Alpha V Beta 3 Structure
Length = 692
Score = 26.9 bits (58), Expect = 6.9, Method: Composition-based stats.
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 48 CSNDWDGVKCNATTR 62
C +DW G CN TTR
Sbjct: 549 CDSDWTGYYCNCTTR 563
>pdb|4G1E|B Chain B, Crystal Structure Of Integrin Alpha V Beta 3 With
Coil-Coiled Tag
Length = 738
Score = 26.9 bits (58), Expect = 7.0, Method: Composition-based stats.
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 48 CSNDWDGVKCNATTR 62
C +DW G CN TTR
Sbjct: 549 CDSDWTGYYCNCTTR 563
>pdb|3FCS|B Chain B, Structure Of Complete Ectodomain Of Integrin Aiibb3
pdb|3FCS|D Chain D, Structure Of Complete Ectodomain Of Integrin Aiibb3
Length = 690
Score = 26.9 bits (58), Expect = 7.0, Method: Composition-based stats.
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 48 CSNDWDGVKCNATTR 62
C +DW G CN TTR
Sbjct: 549 CDSDWTGYYCNCTTR 563
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
Length = 394
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 12/77 (15%)
Query: 5 KCCLQKERIGLLALKSFFISISDTEYAEEILTSWVDDDGMSSDCSNDWDGVKCNATTRRV 64
+ ++K+ + L +K F++++ + EY E LT D ++ + CN T R+V
Sbjct: 220 RILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAV------IFCN-TRRKV 272
Query: 65 MHL---LLNDTAKFNFS 78
L L ND KF S
Sbjct: 273 EELTTKLRND--KFTVS 287
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
Length = 395
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 12/77 (15%)
Query: 5 KCCLQKERIGLLALKSFFISISDTEYAEEILTSWVDDDGMSSDCSNDWDGVKCNATTRRV 64
+ ++K+ + L +K F++++ + EY E LT D ++ + CN T R+V
Sbjct: 221 RILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAV------IFCN-TRRKV 273
Query: 65 MHL---LLNDTAKFNFS 78
L L ND KF S
Sbjct: 274 EELTTKLRND--KFTVS 288
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,881,662
Number of Sequences: 62578
Number of extensions: 164673
Number of successful extensions: 653
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 644
Number of HSP's gapped (non-prelim): 14
length of query: 203
length of database: 14,973,337
effective HSP length: 94
effective length of query: 109
effective length of database: 9,091,005
effective search space: 990919545
effective search space used: 990919545
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)