Query 035976
Match_columns 203
No_of_seqs 259 out of 2984
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 08:11:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035976.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035976hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 6.6E-21 1.4E-25 175.8 14.7 173 8-201 27-226 (968)
2 PLN03150 hypothetical protein; 99.7 5.3E-16 1.1E-20 137.0 13.8 149 5-182 367-523 (623)
3 PLN00113 leucine-rich repeat r 99.5 2E-13 4.4E-18 126.4 10.6 106 90-200 157-273 (968)
4 KOG0617 Ras suppressor protein 99.4 4.1E-15 8.9E-20 109.0 -3.9 124 61-203 32-189 (264)
5 KOG4194 Membrane glycoprotein 99.4 3.8E-14 8.2E-19 120.3 -0.4 109 90-203 286-408 (873)
6 KOG0617 Ras suppressor protein 99.3 7.5E-14 1.6E-18 102.4 -4.6 86 90-182 95-181 (264)
7 KOG4194 Membrane glycoprotein 99.2 9.6E-12 2.1E-16 105.9 5.1 123 64-203 80-213 (873)
8 PF14580 LRR_9: Leucine-rich r 99.1 3.9E-11 8.5E-16 89.5 3.9 91 95-193 40-146 (175)
9 KOG0472 Leucine-rich repeat pr 99.1 5.3E-12 1.1E-16 103.3 -1.2 105 89-200 427-541 (565)
10 PLN03150 hypothetical protein; 99.1 2.7E-10 5.9E-15 101.0 9.0 96 98-198 419-526 (623)
11 KOG4237 Extracellular matrix p 99.1 1.3E-11 2.8E-16 100.7 0.2 100 63-178 68-168 (498)
12 PF14580 LRR_9: Leucine-rich r 99.1 1.1E-10 2.4E-15 87.1 3.9 100 93-202 15-128 (175)
13 KOG0444 Cytoskeletal regulator 99.1 3.3E-12 7.2E-17 109.7 -4.9 106 90-203 238-355 (1255)
14 KOG0444 Cytoskeletal regulator 99.0 2.8E-11 6E-16 104.2 -0.1 85 90-182 96-181 (1255)
15 PF13855 LRR_8: Leucine rich r 98.9 4.1E-10 8.8E-15 69.6 2.3 61 97-161 1-61 (61)
16 KOG1259 Nischarin, modulator o 98.9 8.9E-11 1.9E-15 93.2 -1.0 103 91-203 301-415 (490)
17 KOG0618 Serine/threonine phosp 98.9 1.8E-10 4E-15 102.4 0.5 101 90-198 376-487 (1081)
18 PRK15370 E3 ubiquitin-protein 98.9 3.9E-08 8.4E-13 88.6 14.0 93 97-203 199-299 (754)
19 KOG0472 Leucine-rich repeat pr 98.9 2.8E-11 6.2E-16 99.1 -6.7 100 96-203 182-291 (565)
20 PF08263 LRRNT_2: Leucine rich 98.8 6.4E-09 1.4E-13 59.5 3.5 42 9-58 2-43 (43)
21 KOG4237 Extracellular matrix p 98.8 3.9E-10 8.4E-15 92.2 -2.5 100 98-202 68-179 (498)
22 cd00116 LRR_RI Leucine-rich re 98.7 5.9E-09 1.3E-13 84.7 3.3 85 97-182 137-229 (319)
23 PF13855 LRR_8: Leucine rich r 98.7 5.3E-09 1.2E-13 64.5 2.0 55 125-180 1-55 (61)
24 PLN03210 Resistant to P. syrin 98.7 9.1E-08 2E-12 90.5 11.0 107 90-203 627-741 (1153)
25 PRK15370 E3 ubiquitin-protein 98.7 4.5E-08 9.8E-13 88.2 6.7 51 149-203 325-383 (754)
26 KOG0618 Serine/threonine phosp 98.7 3.4E-09 7.5E-14 94.5 -0.5 117 61-197 382-510 (1081)
27 KOG1259 Nischarin, modulator o 98.7 4.6E-09 9.9E-14 83.6 0.2 98 96-202 283-389 (490)
28 cd00116 LRR_RI Leucine-rich re 98.7 1.7E-08 3.7E-13 82.0 3.5 110 91-201 159-292 (319)
29 PRK15387 E3 ubiquitin-protein 98.6 1.5E-07 3.2E-12 84.8 9.5 35 127-166 284-318 (788)
30 PRK15387 E3 ubiquitin-protein 98.6 1.4E-07 3E-12 85.0 9.0 69 97-182 242-310 (788)
31 KOG0532 Leucine-rich repeat (L 98.6 2.9E-09 6.4E-14 90.7 -2.5 104 90-203 114-227 (722)
32 COG4886 Leucine-rich repeat (L 98.5 9.1E-08 2E-12 80.4 3.9 60 98-163 141-200 (394)
33 PLN03210 Resistant to P. syrin 98.5 1.4E-06 2.9E-11 82.7 11.4 97 95-198 609-715 (1153)
34 KOG3207 Beta-tubulin folding c 98.5 6E-08 1.3E-12 80.4 1.6 79 123-202 220-316 (505)
35 PF12799 LRR_4: Leucine Rich r 98.3 9.3E-07 2E-11 50.7 3.7 37 126-163 2-38 (44)
36 KOG1859 Leucine-rich repeat pr 98.2 1.9E-08 4.2E-13 88.1 -6.5 99 92-200 182-292 (1096)
37 COG4886 Leucine-rich repeat (L 98.2 1.2E-06 2.7E-11 73.6 3.3 64 91-160 157-220 (394)
38 PF12799 LRR_4: Leucine Rich r 98.1 3.6E-06 7.9E-11 48.2 3.9 37 97-138 1-37 (44)
39 KOG0532 Leucine-rich repeat (L 98.1 2.9E-07 6.3E-12 78.8 -1.3 103 90-202 137-249 (722)
40 KOG1644 U2-associated snRNP A' 98.1 4.4E-06 9.5E-11 63.1 5.0 88 91-182 58-148 (233)
41 KOG0531 Protein phosphatase 1, 98.1 7.3E-07 1.6E-11 75.6 0.8 101 92-202 90-201 (414)
42 KOG4658 Apoptotic ATPase [Sign 98.1 2.6E-06 5.6E-11 78.2 3.7 87 90-182 564-650 (889)
43 KOG4658 Apoptotic ATPase [Sign 98.0 4.9E-06 1.1E-10 76.4 4.3 95 97-197 545-652 (889)
44 KOG3207 Beta-tubulin folding c 98.0 3.6E-07 7.7E-12 75.9 -2.9 108 91-202 166-286 (505)
45 KOG4579 Leucine-rich repeat (L 98.0 5.3E-07 1.2E-11 64.2 -2.1 84 91-182 47-131 (177)
46 KOG1859 Leucine-rich repeat pr 98.0 2.8E-07 6.1E-12 81.0 -4.4 95 98-201 165-268 (1096)
47 KOG0531 Protein phosphatase 1, 97.9 2.8E-06 6E-11 72.1 0.4 100 94-202 69-177 (414)
48 KOG4579 Leucine-rich repeat (L 97.9 1.4E-06 3.1E-11 62.0 -1.1 90 61-168 52-141 (177)
49 KOG3665 ZYG-1-like serine/thre 97.8 2.1E-05 4.7E-10 70.6 4.5 100 95-200 146-263 (699)
50 KOG1644 U2-associated snRNP A' 97.8 3.9E-05 8.5E-10 58.1 4.7 94 96-196 41-149 (233)
51 KOG1909 Ran GTPase-activating 97.7 1.4E-05 3.1E-10 64.8 1.7 55 145-200 209-283 (382)
52 KOG2739 Leucine-rich acidic nu 97.6 3.5E-05 7.7E-10 60.2 2.7 84 91-181 59-150 (260)
53 KOG1909 Ran GTPase-activating 97.6 3.3E-05 7.2E-10 62.8 1.8 77 124-200 156-254 (382)
54 KOG2739 Leucine-rich acidic nu 97.6 3E-05 6.6E-10 60.6 1.5 93 93-193 39-149 (260)
55 KOG3665 ZYG-1-like serine/thre 97.3 0.00011 2.3E-09 66.1 1.9 97 97-200 122-233 (699)
56 COG5238 RNA1 Ran GTPase-activa 97.2 0.00052 1.1E-08 54.5 4.6 109 91-200 86-227 (388)
57 KOG2982 Uncharacterized conser 97.0 0.00046 1E-08 55.4 2.3 67 90-161 90-158 (418)
58 KOG2982 Uncharacterized conser 96.9 0.00042 9E-09 55.7 1.1 85 96-182 70-154 (418)
59 KOG2123 Uncharacterized conser 96.8 4.6E-05 1E-09 60.5 -4.2 99 63-180 20-123 (388)
60 PF13306 LRR_5: Leucine rich r 96.7 0.0083 1.8E-07 41.9 7.0 83 90-181 28-110 (129)
61 PF13504 LRR_7: Leucine rich r 96.6 0.0012 2.6E-08 29.6 1.4 17 187-203 1-17 (17)
62 KOG2123 Uncharacterized conser 96.4 9.1E-05 2E-09 58.9 -5.1 89 96-193 18-123 (388)
63 KOG2120 SCF ubiquitin ligase, 96.2 0.00026 5.6E-09 56.9 -3.7 56 99-157 187-242 (419)
64 KOG2120 SCF ubiquitin ligase, 95.9 0.00089 1.9E-08 53.9 -1.9 101 93-196 256-372 (419)
65 PF00560 LRR_1: Leucine Rich R 95.7 0.0033 7.1E-08 30.1 0.1 11 100-110 3-13 (22)
66 PF13306 LRR_5: Leucine rich r 95.6 0.022 4.7E-07 39.7 4.4 98 90-196 5-112 (129)
67 COG5238 RNA1 Ran GTPase-activa 95.6 0.027 5.8E-07 45.1 5.1 93 62-162 30-133 (388)
68 PRK15386 type III secretion pr 95.6 0.038 8.2E-07 46.8 6.2 50 97-160 72-123 (426)
69 smart00370 LRR Leucine-rich re 95.5 0.013 2.9E-07 29.0 2.2 18 186-203 1-18 (26)
70 smart00369 LRR_TYP Leucine-ric 95.5 0.013 2.9E-07 29.0 2.2 18 186-203 1-18 (26)
71 PF00560 LRR_1: Leucine Rich R 95.4 0.0074 1.6E-07 28.8 1.0 21 126-147 1-21 (22)
72 KOG0473 Leucine-rich repeat pr 95.1 0.00025 5.4E-09 55.1 -7.5 63 93-161 61-123 (326)
73 smart00370 LRR Leucine-rich re 94.6 0.039 8.5E-07 27.3 2.3 22 148-170 1-22 (26)
74 smart00369 LRR_TYP Leucine-ric 94.6 0.039 8.5E-07 27.3 2.3 22 148-170 1-22 (26)
75 PRK15386 type III secretion pr 93.9 0.42 9.2E-06 40.7 8.3 30 97-137 94-124 (426)
76 smart00365 LRR_SD22 Leucine-ri 92.6 0.1 2.3E-06 26.0 1.8 16 187-202 2-17 (26)
77 smart00364 LRR_BAC Leucine-ric 92.4 0.087 1.9E-06 26.2 1.3 16 188-203 3-18 (26)
78 KOG0473 Leucine-rich repeat pr 91.8 0.0027 5.8E-08 49.5 -6.8 86 89-182 34-119 (326)
79 KOG3864 Uncharacterized conser 90.9 0.039 8.4E-07 42.1 -1.3 80 98-182 102-184 (221)
80 PF13516 LRR_6: Leucine Rich r 88.7 0.19 4.2E-06 24.2 0.6 14 187-200 2-15 (24)
81 smart00368 LRR_RI Leucine rich 84.1 0.94 2E-05 22.8 1.8 14 187-200 2-15 (28)
82 KOG1947 Leucine rich repeat pr 80.4 1.1 2.3E-05 38.3 1.9 14 184-197 292-305 (482)
83 KOG1947 Leucine rich repeat pr 80.3 1.9 4E-05 36.8 3.3 89 93-182 210-303 (482)
84 KOG3763 mRNA export factor TAP 78.9 1.3 2.8E-05 38.9 1.8 85 94-180 215-307 (585)
85 KOG3763 mRNA export factor TAP 53.7 7.9 0.00017 34.2 1.6 81 60-155 216-307 (585)
86 smart00367 LRR_CC Leucine-rich 41.7 20 0.00044 17.2 1.4 13 186-198 1-13 (26)
87 TIGR00864 PCC polycystin catio 40.4 23 0.0005 37.4 2.7 33 103-139 1-33 (2740)
88 KOG3864 Uncharacterized conser 37.2 19 0.00042 27.7 1.3 70 126-195 102-184 (221)
89 TIGR00864 PCC polycystin catio 29.1 38 0.00083 35.9 2.1 24 89-112 11-34 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.86 E-value=6.6e-21 Score=175.83 Aligned_cols=173 Identities=29% Similarity=0.426 Sum_probs=123.2
Q ss_pred ChHHHHHHHHHHhhccccCCccccccccCCCCCCCCCCCCCCCCCCccccCCCCCCeeEEecCCc---------------
Q 035976 8 LQKERIGLLALKSFFISISDTEYAEEILTSWVDDDGMSSDCSNDWDGVKCNATTRRVMHLLLNDT--------------- 72 (203)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~c~~w~gv~c~~~~~~v~~l~l~~~--------------- 72 (203)
++.|+.+|++||+++. +|. ..+.+|.. . .+|| .|.||.|+. .++|+.|+++++
T Consensus 27 ~~~~~~~l~~~~~~~~-----~~~-~~~~~w~~--~--~~~c-~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~ 94 (968)
T PLN00113 27 HAEELELLLSFKSSIN-----DPL-KYLSNWNS--S--ADVC-LWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPY 94 (968)
T ss_pred CHHHHHHHHHHHHhCC-----CCc-ccCCCCCC--C--CCCC-cCcceecCC-CCcEEEEEecCCCccccCChHHhCCCC
Confidence 6789999999999997 676 46889976 3 5899 999999986 568999999887
Q ss_pred -cccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCC
Q 035976 73 -AKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISL 151 (203)
Q Consensus 73 -~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 151 (203)
+.|+++++.+.+. ++...+..+++|++|++++|.+++.+|. ..+++|++|++++|.+++..|..+..+++|
T Consensus 95 L~~L~Ls~n~~~~~--ip~~~~~~l~~L~~L~Ls~n~l~~~~p~------~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L 166 (968)
T PLN00113 95 IQTINLSNNQLSGP--IPDDIFTTSSSLRYLNLSNNNFTGSIPR------GSIPNLETLDLSNNMLSGEIPNDIGSFSSL 166 (968)
T ss_pred CCEEECCCCccCCc--CChHHhccCCCCCEEECcCCccccccCc------cccCCCCEEECcCCcccccCChHHhcCCCC
Confidence 1222333322221 1222333555666666666665554443 346677777777777777777778888888
Q ss_pred cEEeccCCCCCCCcchhhhCCCCCCcEEEEe-----------cCCCCCCCEEEccCCCCCc
Q 035976 152 TTLILRENNIEGSRTIEGLSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGITT 201 (203)
Q Consensus 152 ~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~-----------~~~l~~L~~L~L~~N~l~~ 201 (203)
+.|++++|.+.+.+|. .+.++++|++|+++ ++.+++|+.|+|++|++++
T Consensus 167 ~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 226 (968)
T PLN00113 167 KVLDLGGNVLVGKIPN-SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG 226 (968)
T ss_pred CEEECccCcccccCCh-hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC
Confidence 8888888888776775 77888888888886 5677788888888888764
No 2
>PLN03150 hypothetical protein; Provisional
Probab=99.68 E-value=5.3e-16 Score=137.00 Aligned_cols=149 Identities=27% Similarity=0.318 Sum_probs=120.0
Q ss_pred ccCChHHHHHHHHHHhhccccCCccccccccCCCCCCCCCCCCCC---CCCCccccCCC--C--CCeeEEecCCcccccc
Q 035976 5 KCCLQKERIGLLALKSFFISISDTEYAEEILTSWVDDDGMSSDCS---NDWDGVKCNAT--T--RRVMHLLLNDTAKFNF 77 (203)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~c---~~w~gv~c~~~--~--~~v~~l~l~~~~~l~l 77 (203)
..+.+.|.+||+.+|+++. ++. ..+|.+ ++|| ..|.||.|... . ..|+.|+|+++ .+
T Consensus 367 ~~t~~~~~~aL~~~k~~~~-----~~~---~~~W~g-----~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n---~L 430 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLG-----LPL---RFGWNG-----DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQ---GL 430 (623)
T ss_pred cccCchHHHHHHHHHHhcC-----Ccc---cCCCCC-----CCCCCcccccccceeeccCCCCceEEEEEECCCC---Cc
Confidence 3467789999999999986 432 247976 3442 16999999531 1 24888888888 66
Q ss_pred ccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEecc
Q 035976 78 SYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILR 157 (203)
Q Consensus 78 ~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 157 (203)
.+. .+..+..+++|+.|+|++|.+.+.+|. .+..+++|+.|+|++|++++.+|..+..+++|+.|+|+
T Consensus 431 ~g~--------ip~~i~~L~~L~~L~Ls~N~l~g~iP~----~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 431 RGF--------IPNDISKLRHLQSINLSGNSIRGNIPP----SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred ccc--------CCHHHhCCCCCCEEECCCCcccCcCCh----HHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 654 367889999999999999999998998 89999999999999999999999999999999999999
Q ss_pred CCCCCCCcchhhhCCC-CCCcEEEEe
Q 035976 158 ENNIEGSRTIEGLSNL-RNLQLLDLR 182 (203)
Q Consensus 158 ~N~l~~~lp~~~~~~l-~~L~~L~l~ 182 (203)
+|++++.+|. .+..+ .++..+++.
T Consensus 499 ~N~l~g~iP~-~l~~~~~~~~~l~~~ 523 (623)
T PLN03150 499 GNSLSGRVPA-ALGGRLLHRASFNFT 523 (623)
T ss_pred CCcccccCCh-HHhhccccCceEEec
Confidence 9999998986 55543 345555554
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.48 E-value=2e-13 Score=126.37 Aligned_cols=106 Identities=32% Similarity=0.364 Sum_probs=63.0
Q ss_pred CccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhh
Q 035976 90 FSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEG 169 (203)
Q Consensus 90 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~ 169 (203)
+..+..+++|++|++++|.+.+.+|. .+.++++|++|++++|.+++.+|..+..+++|+.|++++|++++.+|. .
T Consensus 157 p~~~~~l~~L~~L~L~~n~l~~~~p~----~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~ 231 (968)
T PLN00113 157 PNDIGSFSSLKVLDLGGNVLVGKIPN----SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY-E 231 (968)
T ss_pred ChHHhcCCCCCEEECccCcccccCCh----hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCCh-h
Confidence 44456666666666666666655565 556666666666666666655666666666666666666666654553 5
Q ss_pred hCCCCCCcEEEEe-----------cCCCCCCCEEEccCCCCC
Q 035976 170 LSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGIT 200 (203)
Q Consensus 170 ~~~l~~L~~L~l~-----------~~~l~~L~~L~L~~N~l~ 200 (203)
+..+++|++|+++ ++.+++|+.|+|++|+++
T Consensus 232 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 273 (968)
T PLN00113 232 IGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS 273 (968)
T ss_pred HhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeee
Confidence 5666666666554 344455555555555543
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.42 E-value=4.1e-15 Score=108.95 Aligned_cols=124 Identities=28% Similarity=0.390 Sum_probs=85.5
Q ss_pred CCCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCC
Q 035976 61 TRRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDS 140 (203)
Q Consensus 61 ~~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~ 140 (203)
...++++.|+++ .+... ++.+..+.+|+.|++.+|+++. +|. .++.+++|+.|+++.|++. .
T Consensus 32 ~s~ITrLtLSHN---Kl~~v---------ppnia~l~nlevln~~nnqie~-lp~----~issl~klr~lnvgmnrl~-~ 93 (264)
T KOG0617|consen 32 MSNITRLTLSHN---KLTVV---------PPNIAELKNLEVLNLSNNQIEE-LPT----SISSLPKLRILNVGMNRLN-I 93 (264)
T ss_pred hhhhhhhhcccC---ceeec---------CCcHHHhhhhhhhhcccchhhh-cCh----hhhhchhhhheecchhhhh-c
Confidence 456778888887 55443 5677778888888888888887 676 7777888888888877777 6
Q ss_pred ChhhhcCCCCCcEEeccCCCCCC-C-----------------------cchhhhCCCCCCcEEEEe----------cCCC
Q 035976 141 ILPYLNTLISLTTLILRENNIEG-S-----------------------RTIEGLSNLRNLQLLDLR----------LANL 186 (203)
Q Consensus 141 ~p~~~~~l~~L~~L~L~~N~l~~-~-----------------------lp~~~~~~l~~L~~L~l~----------~~~l 186 (203)
.|..|+.++.|+.|||.+|++.. . +|+ .++++.+|+.|.+. ++.+
T Consensus 94 lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~-dvg~lt~lqil~lrdndll~lpkeig~l 172 (264)
T KOG0617|consen 94 LPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPP-DVGKLTNLQILSLRDNDLLSLPKEIGDL 172 (264)
T ss_pred CccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCCh-hhhhhcceeEEeeccCchhhCcHHHHHH
Confidence 77778888888888777777764 2 333 34555555555554 4555
Q ss_pred CCCCEEEccCCCCCcCC
Q 035976 187 TNLKTLDLRDCGITTIQ 203 (203)
Q Consensus 187 ~~L~~L~L~~N~l~~ip 203 (203)
+.|++|++.+|+++-+|
T Consensus 173 t~lrelhiqgnrl~vlp 189 (264)
T KOG0617|consen 173 TRLRELHIQGNRLTVLP 189 (264)
T ss_pred HHHHHHhcccceeeecC
Confidence 56666666666665554
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.39 E-value=3.8e-14 Score=120.30 Aligned_cols=109 Identities=28% Similarity=0.323 Sum_probs=67.1
Q ss_pred CccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhh
Q 035976 90 FSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEG 169 (203)
Q Consensus 90 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~ 169 (203)
.+.+.+|+.|+.|+|++|.+...-++ .+...++|++|+|++|+++...+..|..+..|+.|+|+.|+++. +....
T Consensus 286 ~g~lfgLt~L~~L~lS~NaI~rih~d----~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~-l~e~a 360 (873)
T KOG4194|consen 286 EGWLFGLTSLEQLDLSYNAIQRIHID----SWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDH-LAEGA 360 (873)
T ss_pred cccccccchhhhhccchhhhheeecc----hhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHH-HHhhH
Confidence 44555666666666666666664444 55566667777777777765555666666666666666666655 44445
Q ss_pred hCCCCCCcEEEEe--------------cCCCCCCCEEEccCCCCCcCC
Q 035976 170 LSNLRNLQLLDLR--------------LANLTNLKTLDLRDCGITTIQ 203 (203)
Q Consensus 170 ~~~l~~L~~L~l~--------------~~~l~~L~~L~L~~N~l~~ip 203 (203)
|..+++|+.|||+ |..+++|+.|+|.+|+|..||
T Consensus 361 f~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~ 408 (873)
T KOG4194|consen 361 FVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIP 408 (873)
T ss_pred HHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecc
Confidence 6666666666665 555666666666666555543
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.27 E-value=7.5e-14 Score=102.36 Aligned_cols=86 Identities=26% Similarity=0.357 Sum_probs=60.9
Q ss_pred CccCCCCCCCCEEEccCCcCCCc-ccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchh
Q 035976 90 FSLFHPFEELQSLDLSLNAFEGF-YENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIE 168 (203)
Q Consensus 90 ~~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~ 168 (203)
|..|+.++.|++|||.+|.+... +|. .|..++.|+-|.++.|.+. .+|+.++++++|+.|.+..|.+-. +|.
T Consensus 95 prgfgs~p~levldltynnl~e~~lpg----nff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~-lpk- 167 (264)
T KOG0617|consen 95 PRGFGSFPALEVLDLTYNNLNENSLPG----NFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLS-LPK- 167 (264)
T ss_pred ccccCCCchhhhhhccccccccccCCc----chhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhh-CcH-
Confidence 44555555555555555555432 333 4444555555555555555 678889999999999999999987 996
Q ss_pred hhCCCCCCcEEEEe
Q 035976 169 GLSNLRNLQLLDLR 182 (203)
Q Consensus 169 ~~~~l~~L~~L~l~ 182 (203)
.++.+..|++|++.
T Consensus 168 eig~lt~lrelhiq 181 (264)
T KOG0617|consen 168 EIGDLTRLRELHIQ 181 (264)
T ss_pred HHHHHHHHHHHhcc
Confidence 89999999999886
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.23 E-value=9.6e-12 Score=105.95 Aligned_cols=123 Identities=25% Similarity=0.290 Sum_probs=80.7
Q ss_pred eeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChh
Q 035976 64 VMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILP 143 (203)
Q Consensus 64 v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~ 143 (203)
+..|+++++ .++.. ++..|.++++|+.+++..|.++. +|. ......+|+.|+|..|.|+..-.+
T Consensus 80 t~~LdlsnN---kl~~i--------d~~~f~nl~nLq~v~l~~N~Lt~-IP~----f~~~sghl~~L~L~~N~I~sv~se 143 (873)
T KOG4194|consen 80 TQTLDLSNN---KLSHI--------DFEFFYNLPNLQEVNLNKNELTR-IPR----FGHESGHLEKLDLRHNLISSVTSE 143 (873)
T ss_pred eeeeecccc---ccccC--------cHHHHhcCCcceeeeeccchhhh-ccc----ccccccceeEEeeeccccccccHH
Confidence 445666666 55443 46677788888888888888887 675 333444577777777777665566
Q ss_pred hhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe-----------cCCCCCCCEEEccCCCCCcCC
Q 035976 144 YLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGITTIQ 203 (203)
Q Consensus 144 ~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~-----------~~~l~~L~~L~L~~N~l~~ip 203 (203)
.+.-++.|+.|||+.|.|+. +|...|..-.++++|+|+ |..+.+|..|.|+.|+|+.+|
T Consensus 144 ~L~~l~alrslDLSrN~is~-i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp 213 (873)
T KOG4194|consen 144 ELSALPALRSLDLSRNLISE-IPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLP 213 (873)
T ss_pred HHHhHhhhhhhhhhhchhhc-ccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccC
Confidence 66666777777777777766 655455555666666666 555566666666666666554
No 8
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.13 E-value=3.9e-11 Score=89.54 Aligned_cols=91 Identities=36% Similarity=0.487 Sum_probs=39.5
Q ss_pred CCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhh-cCCCCCcEEeccCCCCCCCcc-hhhhCC
Q 035976 95 PFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYL-NTLISLTTLILRENNIEGSRT-IEGLSN 172 (203)
Q Consensus 95 ~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~lp-~~~~~~ 172 (203)
.+.+|+.|++++|.++. ++ .+..++.|++|++++|.++. +++.+ ..+++|+.|++++|+|.. +. ...+..
T Consensus 40 ~l~~L~~L~Ls~N~I~~-l~-----~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~~N~I~~-l~~l~~L~~ 111 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQITK-LE-----GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLSNNKISD-LNELEPLSS 111 (175)
T ss_dssp T-TT--EEE-TTS--S---T-----T----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---S-CCCCGGGGG
T ss_pred hhcCCCEEECCCCCCcc-cc-----CccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECcCCcCCC-hHHhHHHHc
Confidence 46788889999998887 44 56678888999999998884 43444 467888899999888875 22 124556
Q ss_pred CCCCcEEEEe--------------cCCCCCCCEEE
Q 035976 173 LRNLQLLDLR--------------LANLTNLKTLD 193 (203)
Q Consensus 173 l~~L~~L~l~--------------~~~l~~L~~L~ 193 (203)
+++|++|++. +..+|+|+.||
T Consensus 112 l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 112 LPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp -TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred CCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 7777777775 55666666665
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.13 E-value=5.3e-12 Score=103.28 Aligned_cols=105 Identities=36% Similarity=0.466 Sum_probs=94.7
Q ss_pred CCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchh
Q 035976 89 NFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIE 168 (203)
Q Consensus 89 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~ 168 (203)
.+..++.+++|+.|+|++|.+.. +|. +++.+..||.|+++.|+|. .+|..+..+..++.+-.++|++.. ++++
T Consensus 427 v~~~l~~l~kLt~L~L~NN~Ln~-LP~----e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~-vd~~ 499 (565)
T KOG0472|consen 427 VPLELSQLQKLTFLDLSNNLLND-LPE----EMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGS-VDPS 499 (565)
T ss_pred chHHHHhhhcceeeecccchhhh-cch----hhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccc-cChH
Confidence 46678889999999999999998 888 8889999999999999998 788888888888888888899988 8876
Q ss_pred hhCCCCCCcEEEEe----------cCCCCCCCEEEccCCCCC
Q 035976 169 GLSNLRNLQLLDLR----------LANLTNLKTLDLRDCGIT 200 (203)
Q Consensus 169 ~~~~l~~L~~L~l~----------~~~l~~L~~L~L~~N~l~ 200 (203)
.+..+.+|..||+. ++++++|++|+|.+|.|+
T Consensus 500 ~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 500 GLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 78999999999998 899999999999999997
No 10
>PLN03150 hypothetical protein; Provisional
Probab=99.11 E-value=2.7e-10 Score=100.97 Aligned_cols=96 Identities=29% Similarity=0.459 Sum_probs=84.9
Q ss_pred CCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCc
Q 035976 98 ELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQ 177 (203)
Q Consensus 98 ~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~ 177 (203)
.++.|+|++|.+.+.+|. .+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|. .++.+++|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~----~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~-~l~~L~~L~ 493 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPN----DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE-SLGQLTSLR 493 (623)
T ss_pred EEEEEECCCCCccccCCH----HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch-HHhcCCCCC
Confidence 478899999999999998 999999999999999999999999999999999999999999998886 899999999
Q ss_pred EEEEe-----------cCC-CCCCCEEEccCCC
Q 035976 178 LLDLR-----------LAN-LTNLKTLDLRDCG 198 (203)
Q Consensus 178 ~L~l~-----------~~~-l~~L~~L~L~~N~ 198 (203)
+|+|+ +.. ..++..+++.+|.
T Consensus 494 ~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 494 ILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred EEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 99997 111 2345678888886
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.10 E-value=1.3e-11 Score=100.70 Aligned_cols=100 Identities=26% Similarity=0.296 Sum_probs=60.7
Q ss_pred CeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccC-CCCCCCC
Q 035976 63 RVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEA-NHFNDSI 141 (203)
Q Consensus 63 ~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~-n~l~~~~ 141 (203)
..+.|.|..| .++. +++..|..+++|+.|||+.|.|+.+.|. .|.+++.|..|-+.+ |+|+...
T Consensus 68 ~tveirLdqN---~I~~--------iP~~aF~~l~~LRrLdLS~N~Is~I~p~----AF~GL~~l~~Lvlyg~NkI~~l~ 132 (498)
T KOG4237|consen 68 ETVEIRLDQN---QISS--------IPPGAFKTLHRLRRLDLSKNNISFIAPD----AFKGLASLLSLVLYGNNKITDLP 132 (498)
T ss_pred cceEEEeccC---Cccc--------CChhhccchhhhceecccccchhhcChH----hhhhhHhhhHHHhhcCCchhhhh
Confidence 3456666655 4433 3678888888899999999888886676 777777766665544 7777443
Q ss_pred hhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcE
Q 035976 142 LPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQL 178 (203)
Q Consensus 142 p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~ 178 (203)
-..|.++..|+.|.+.-|++.- ++.+.|..+++|..
T Consensus 133 k~~F~gL~slqrLllNan~i~C-ir~~al~dL~~l~l 168 (498)
T KOG4237|consen 133 KGAFGGLSSLQRLLLNANHINC-IRQDALRDLPSLSL 168 (498)
T ss_pred hhHhhhHHHHHHHhcChhhhcc-hhHHHHHHhhhcch
Confidence 3445555555555555444443 33334444444433
No 12
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.07 E-value=1.1e-10 Score=87.10 Aligned_cols=100 Identities=33% Similarity=0.428 Sum_probs=39.7
Q ss_pred CCCCCCCCEEEccCCcCCCcccchhhhccC-CCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhh-
Q 035976 93 FHPFEELQSLDLSLNAFEGFYENRAYDSNG-SLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGL- 170 (203)
Q Consensus 93 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~- 170 (203)
+.+..++++|+|.+|.++. +. .++ .+.+|+.|++++|.++. + +.+..++.|+.|++++|+++. ++. .+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~-Ie-----~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~-i~~-~l~ 84 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST-IE-----NLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISS-ISE-GLD 84 (175)
T ss_dssp ---------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CH-HHH
T ss_pred ccccccccccccccccccc-cc-----chhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCc-ccc-chH
Confidence 3445578999999999987 43 454 57899999999999983 3 468889999999999999998 764 34
Q ss_pred CCCCCCcEEEEe------------cCCCCCCCEEEccCCCCCcC
Q 035976 171 SNLRNLQLLDLR------------LANLTNLKTLDLRDCGITTI 202 (203)
Q Consensus 171 ~~l~~L~~L~l~------------~~~l~~L~~L~L~~N~l~~i 202 (203)
..+++|++|+++ +..+++|+.|+|.+|.++.-
T Consensus 85 ~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 85 KNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK 128 (175)
T ss_dssp HH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred HhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch
Confidence 468999999998 67889999999999998753
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.07 E-value=3.3e-12 Score=109.72 Aligned_cols=106 Identities=24% Similarity=0.349 Sum_probs=85.5
Q ss_pred CccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCC--CCcch
Q 035976 90 FSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIE--GSRTI 167 (203)
Q Consensus 90 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~lp~ 167 (203)
|..+.++++|+.|+|++|.++. +.. ......+|++|++++|+++ .+|..+.++++|+.|.+.+|+++ | ||.
T Consensus 238 Pecly~l~~LrrLNLS~N~ite-L~~----~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeG-iPS 310 (1255)
T KOG0444|consen 238 PECLYKLRNLRRLNLSGNKITE-LNM----TEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEG-IPS 310 (1255)
T ss_pred hHHHhhhhhhheeccCcCceee-eec----cHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccC-Ccc
Confidence 7788888999999999999887 443 4556778888999999998 78888888999999999888765 6 886
Q ss_pred hhhCCCCCCcEEEEe----------cCCCCCCCEEEccCCCCCcCC
Q 035976 168 EGLSNLRNLQLLDLR----------LANLTNLKTLDLRDCGITTIQ 203 (203)
Q Consensus 168 ~~~~~l~~L~~L~l~----------~~~l~~L~~L~L~~N~l~~ip 203 (203)
.++++.+|+++..+ +.++..|+.|.|+.|++-.+|
T Consensus 311 -GIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLP 355 (1255)
T KOG0444|consen 311 -GIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLP 355 (1255)
T ss_pred -chhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeech
Confidence 78888888887766 677778888888888776554
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.05 E-value=2.8e-11 Score=104.19 Aligned_cols=85 Identities=27% Similarity=0.255 Sum_probs=53.7
Q ss_pred CccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCCh-hhhcCCCCCcEEeccCCCCCCCcchh
Q 035976 90 FSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSIL-PYLNTLISLTTLILRENNIEGSRTIE 168 (203)
Q Consensus 90 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~lp~~ 168 (203)
|..+..+..|+.|||+.|++.. +|. .+..-+++-+|+|++|+|. .+| +.|.++..|-+|||++|++.. +|+
T Consensus 96 P~diF~l~dLt~lDLShNqL~E-vP~----~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~-LPP- 167 (1255)
T KOG0444|consen 96 PTDIFRLKDLTILDLSHNQLRE-VPT----NLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEM-LPP- 167 (1255)
T ss_pred Cchhcccccceeeecchhhhhh-cch----hhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhh-cCH-
Confidence 5556667777777777777776 666 6666666777777777776 344 344566666667777776665 665
Q ss_pred hhCCCCCCcEEEEe
Q 035976 169 GLSNLRNLQLLDLR 182 (203)
Q Consensus 169 ~~~~l~~L~~L~l~ 182 (203)
.+..+..|+.|.|+
T Consensus 168 Q~RRL~~LqtL~Ls 181 (1255)
T KOG0444|consen 168 QIRRLSMLQTLKLS 181 (1255)
T ss_pred HHHHHhhhhhhhcC
Confidence 44444444444444
No 15
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.95 E-value=4.1e-10 Score=69.56 Aligned_cols=61 Identities=31% Similarity=0.355 Sum_probs=42.9
Q ss_pred CCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCC
Q 035976 97 EELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNI 161 (203)
Q Consensus 97 ~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l 161 (203)
++|++|++++|+++...+. .|..+++|++|++++|.++...|..|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~----~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPD----SFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTT----TTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHH----HHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4677777777777763333 666777777777777777755556677777777777777764
No 16
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.94 E-value=8.9e-11 Score=93.22 Aligned_cols=103 Identities=30% Similarity=0.341 Sum_probs=76.8
Q ss_pred ccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhh
Q 035976 91 SLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGL 170 (203)
Q Consensus 91 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~ 170 (203)
....-++.++.|+++.|.+.. +. ++..+++|+.|||++|.++ .+-.+-..+-+.+.|.|+.|.+.. +. .+
T Consensus 301 ESvKL~Pkir~L~lS~N~i~~-v~-----nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~-LS--GL 370 (490)
T KOG1259|consen 301 ESVKLAPKLRRLILSQNRIRT-VQ-----NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET-LS--GL 370 (490)
T ss_pred hhhhhccceeEEeccccceee-eh-----hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh-hh--hh
Confidence 445556778888888888775 32 5667788888888888877 344444567777788888888776 53 57
Q ss_pred CCCCCCcEEEEe------------cCCCCCCCEEEccCCCCCcCC
Q 035976 171 SNLRNLQLLDLR------------LANLTNLKTLDLRDCGITTIQ 203 (203)
Q Consensus 171 ~~l~~L~~L~l~------------~~~l~~L~~L~L~~N~l~~ip 203 (203)
.++.+|..||++ ++++|.|+++.|.+|.+.++|
T Consensus 371 ~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 371 RKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred HhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 788888888887 888899999999999888765
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.93 E-value=1.8e-10 Score=102.41 Aligned_cols=101 Identities=30% Similarity=0.393 Sum_probs=85.3
Q ss_pred CccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhh
Q 035976 90 FSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEG 169 (203)
Q Consensus 90 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~ 169 (203)
.+.+.++++|+.|+|++|++.. +|+ ..+.++..|+.|+|++|+++ .+|..+..+..|++|...+|++.. +| .
T Consensus 376 ~p~l~~~~hLKVLhLsyNrL~~-fpa---s~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~-fP--e 447 (1081)
T KOG0618|consen 376 FPVLVNFKHLKVLHLSYNRLNS-FPA---SKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLS-FP--E 447 (1081)
T ss_pred hhhhccccceeeeeeccccccc-CCH---HHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceee-ch--h
Confidence 3557788999999999999887 565 26778889999999999999 788999999999999999999987 88 5
Q ss_pred hCCCCCCcEEEEe----------c-CCCCCCCEEEccCCC
Q 035976 170 LSNLRNLQLLDLR----------L-ANLTNLKTLDLRDCG 198 (203)
Q Consensus 170 ~~~l~~L~~L~l~----------~-~~l~~L~~L~L~~N~ 198 (203)
+..+++|+++|++ . -..++|++|||++|.
T Consensus 448 ~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 448 LAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 8999999999998 1 222789999999996
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.90 E-value=3.9e-08 Score=88.60 Aligned_cols=93 Identities=26% Similarity=0.290 Sum_probs=59.8
Q ss_pred CCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCC
Q 035976 97 EELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNL 176 (203)
Q Consensus 97 ~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L 176 (203)
+.|+.|++++|.++. +|. .+. ++|++|++++|+++ .+|..+. .+|+.|++++|.++. +|. .+. .+|
T Consensus 199 ~~L~~L~Ls~N~Lts-LP~----~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~~-LP~-~l~--s~L 264 (754)
T PRK15370 199 EQITTLILDNNELKS-LPE----NLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRITE-LPE-RLP--SAL 264 (754)
T ss_pred cCCcEEEecCCCCCc-CCh----hhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccCc-CCh-hHh--CCC
Confidence 357788888888776 565 432 47788888888777 4555442 357777777777775 664 332 367
Q ss_pred cEEEEe---cCC-----CCCCCEEEccCCCCCcCC
Q 035976 177 QLLDLR---LAN-----LTNLKTLDLRDCGITTIQ 203 (203)
Q Consensus 177 ~~L~l~---~~~-----l~~L~~L~L~~N~l~~ip 203 (203)
+.|+++ +.. .++|+.|+|++|+|+++|
T Consensus 265 ~~L~Ls~N~L~~LP~~l~~sL~~L~Ls~N~Lt~LP 299 (754)
T PRK15370 265 QSLDLFHNKISCLPENLPEELRYLSVYDNSIRTLP 299 (754)
T ss_pred CEEECcCCccCccccccCCCCcEEECCCCccccCc
Confidence 777776 221 135777777777777654
No 19
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.86 E-value=2.8e-11 Score=99.07 Aligned_cols=100 Identities=31% Similarity=0.409 Sum_probs=53.8
Q ss_pred CCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCC
Q 035976 96 FEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRN 175 (203)
Q Consensus 96 l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~ 175 (203)
++.|+++|...|-++. +|+ +++.+.+|.-|++.+|++. .+| .|.++..|..++++.|+++- +|......+++
T Consensus 182 m~~L~~ld~~~N~L~t-lP~----~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~-lpae~~~~L~~ 253 (565)
T KOG0472|consen 182 MKRLKHLDCNSNLLET-LPP----ELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEM-LPAEHLKHLNS 253 (565)
T ss_pred HHHHHhcccchhhhhc-CCh----hhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHh-hHHHHhccccc
Confidence 5555555555555554 455 5555555555555555555 343 45555555555555555554 55433335555
Q ss_pred CcEEEEe----------cCCCCCCCEEEccCCCCCcCC
Q 035976 176 LQLLDLR----------LANLTNLKTLDLRDCGITTIQ 203 (203)
Q Consensus 176 L~~L~l~----------~~~l~~L~~L~L~~N~l~~ip 203 (203)
+.+||+. ...+++|..||+++|.|+++|
T Consensus 254 l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp 291 (565)
T KOG0472|consen 254 LLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLP 291 (565)
T ss_pred ceeeeccccccccCchHHHHhhhhhhhcccCCccccCC
Confidence 5555555 334445556666666665554
No 20
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.79 E-value=6.4e-09 Score=59.51 Aligned_cols=42 Identities=33% Similarity=0.692 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHhhccccCCccccccccCCCCCCCCCCCCCCCCCCccccC
Q 035976 9 QKERIGLLALKSFFISISDTEYAEEILTSWVDDDGMSSDCSNDWDGVKCN 58 (203)
Q Consensus 9 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~c~~w~gv~c~ 58 (203)
++|++||++||+++.. +|. ..+.+|..+.. .+|| .|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~----~~~-~~l~~W~~~~~--~~~C-~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNN----DPS-GVLSSWNPSSD--SDPC-SWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-----SC--CCCTT--TT----S-CC-CSTTEEE-
T ss_pred cHHHHHHHHHHHhccc----ccC-cccccCCCcCC--CCCe-eeccEEeC
Confidence 6899999999999983 454 58999998532 4899 99999995
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.78 E-value=3.9e-10 Score=92.22 Aligned_cols=100 Identities=28% Similarity=0.313 Sum_probs=87.4
Q ss_pred CCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccC-CCCCCCcchhhhCCCCCC
Q 035976 98 ELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRE-NNIEGSRTIEGLSNLRNL 176 (203)
Q Consensus 98 ~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~lp~~~~~~l~~L 176 (203)
..+.++|..|+|+. +|+. .|+.+++|+.|||+.|+|+...|+.|.++++|..|-+.+ |+|+. +|.+.|.++..|
T Consensus 68 ~tveirLdqN~I~~-iP~~---aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~-l~k~~F~gL~sl 142 (498)
T KOG4237|consen 68 ETVEIRLDQNQISS-IPPG---AFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD-LPKGAFGGLSSL 142 (498)
T ss_pred cceEEEeccCCccc-CChh---hccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh-hhhhHhhhHHHH
Confidence 56789999999999 5552 888999999999999999999999999999988777766 99999 999999999999
Q ss_pred cEEEEe-----------cCCCCCCCEEEccCCCCCcC
Q 035976 177 QLLDLR-----------LANLTNLKTLDLRDCGITTI 202 (203)
Q Consensus 177 ~~L~l~-----------~~~l~~L~~L~L~~N~l~~i 202 (203)
+.|.+. +..+++|..|.+-+|.+..|
T Consensus 143 qrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i 179 (498)
T KOG4237|consen 143 QRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSI 179 (498)
T ss_pred HHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhh
Confidence 999887 77788888888888877655
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.74 E-value=5.9e-09 Score=84.69 Aligned_cols=85 Identities=27% Similarity=0.312 Sum_probs=35.4
Q ss_pred CCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCC----ChhhhcCCCCCcEEeccCCCCCCC----cchh
Q 035976 97 EELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDS----ILPYLNTLISLTTLILRENNIEGS----RTIE 168 (203)
Q Consensus 97 ~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----lp~~ 168 (203)
++|+.|++++|.+++.........+..+++|++|++++|.+++. ++..+..+++|+.|++++|.+++. ++.
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~- 215 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAE- 215 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHH-
Confidence 44455555555544211110011233344555555555555421 122233334555555555555431 111
Q ss_pred hhCCCCCCcEEEEe
Q 035976 169 GLSNLRNLQLLDLR 182 (203)
Q Consensus 169 ~~~~l~~L~~L~l~ 182 (203)
.+..+++|++|+++
T Consensus 216 ~~~~~~~L~~L~ls 229 (319)
T cd00116 216 TLASLKSLEVLNLG 229 (319)
T ss_pred HhcccCCCCEEecC
Confidence 23344555555555
No 23
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.73 E-value=5.3e-09 Score=64.50 Aligned_cols=55 Identities=33% Similarity=0.419 Sum_probs=43.5
Q ss_pred CCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEE
Q 035976 125 KQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLD 180 (203)
Q Consensus 125 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~ 180 (203)
++|++|++++|+++...+..|..+++|+.|++++|+++. +++..|..+++|++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~-i~~~~f~~l~~L~~L~ 55 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTS-IPPDAFSNLPNLRYLD 55 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESE-EETTTTTTSTTESEEE
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCc-cCHHHHcCCCCCCEEe
Confidence 578999999999996656788999999999999999987 7765655555444443
No 24
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.73 E-value=9.1e-08 Score=90.51 Aligned_cols=107 Identities=21% Similarity=0.189 Sum_probs=78.1
Q ss_pred CccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhh
Q 035976 90 FSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEG 169 (203)
Q Consensus 90 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~ 169 (203)
+..+..+++|+.|+|+++.....+| .+..+++|+.|++++|.....+|..+..+++|+.|+++++..-..+|. .
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip-----~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~-~ 700 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIP-----DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT-G 700 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCC-----ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC-c
Confidence 3455678888888888775444455 567788888888888766667888888888899999988643333775 3
Q ss_pred hCCCCCCcEEEEe----c----CCCCCCCEEEccCCCCCcCC
Q 035976 170 LSNLRNLQLLDLR----L----ANLTNLKTLDLRDCGITTIQ 203 (203)
Q Consensus 170 ~~~l~~L~~L~l~----~----~~l~~L~~L~L~~N~l~~ip 203 (203)
+ ++++|+.|+++ + ...++|+.|+|++|.|+.+|
T Consensus 701 i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP 741 (1153)
T PLN03210 701 I-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFP 741 (1153)
T ss_pred C-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCcccccc
Confidence 3 67888888876 1 22347888899988887765
No 25
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.66 E-value=4.5e-08 Score=88.16 Aligned_cols=51 Identities=27% Similarity=0.365 Sum_probs=25.8
Q ss_pred CCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe---cC-----CCCCCCEEEccCCCCCcCC
Q 035976 149 ISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR---LA-----NLTNLKTLDLRDCGITTIQ 203 (203)
Q Consensus 149 ~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~---~~-----~l~~L~~L~L~~N~l~~ip 203 (203)
++|+.|++++|.++. +|. .+. ++|+.|+++ +. -.++|+.|+|++|+|+.+|
T Consensus 325 ~sL~~L~Ls~N~Lt~-LP~-~l~--~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~N~Lt~LP 383 (754)
T PRK15370 325 PGLKTLEAGENALTS-LPA-SLP--PELQVLDVSKNQITVLPETLPPTITTLDVSRNALTNLP 383 (754)
T ss_pred ccceeccccCCcccc-CCh-hhc--CcccEEECCCCCCCcCChhhcCCcCEEECCCCcCCCCC
Confidence 345555555555554 443 221 455666655 11 1235666666666665554
No 26
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.66 E-value=3.4e-09 Score=94.50 Aligned_cols=117 Identities=26% Similarity=0.263 Sum_probs=94.0
Q ss_pred CCCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCC
Q 035976 61 TRRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDS 140 (203)
Q Consensus 61 ~~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~ 140 (203)
..++.-|+|++| +|... +...+.+++.|+.|+|++|+++. +|. .+..++.|++|...+|++. .
T Consensus 382 ~~hLKVLhLsyN---rL~~f--------pas~~~kle~LeeL~LSGNkL~~-Lp~----tva~~~~L~tL~ahsN~l~-~ 444 (1081)
T KOG0618|consen 382 FKHLKVLHLSYN---RLNSF--------PASKLRKLEELEELNLSGNKLTT-LPD----TVANLGRLHTLRAHSNQLL-S 444 (1081)
T ss_pred ccceeeeeeccc---ccccC--------CHHHHhchHHhHHHhcccchhhh-hhH----HHHhhhhhHHHhhcCCcee-e
Confidence 446777888887 66543 56788999999999999999998 888 8999999999999999998 5
Q ss_pred ChhhhcCCCCCcEEeccCCCCCCC-cchhhhCCCCCCcEEEEe-----------cCCCCCCCEEEccCC
Q 035976 141 ILPYLNTLISLTTLILRENNIEGS-RTIEGLSNLRNLQLLDLR-----------LANLTNLKTLDLRDC 197 (203)
Q Consensus 141 ~p~~~~~l~~L~~L~L~~N~l~~~-lp~~~~~~l~~L~~L~l~-----------~~~l~~L~~L~L~~N 197 (203)
.| .+..+++|+.+|++.|+++.. +| ....-++|++||++ +..+.++..+++.-|
T Consensus 445 fP-e~~~l~qL~~lDlS~N~L~~~~l~--~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 445 FP-ELAQLPQLKVLDLSCNNLSEVTLP--EALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred ch-hhhhcCcceEEecccchhhhhhhh--hhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 67 889999999999999999862 33 22233899999998 555566666666655
No 27
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.66 E-value=4.6e-09 Score=83.63 Aligned_cols=98 Identities=30% Similarity=0.290 Sum_probs=82.2
Q ss_pred CCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCC
Q 035976 96 FEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRN 175 (203)
Q Consensus 96 l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~ 175 (203)
-..|+++||+.|.++. +.. +..-.|.++.|+++.|.+. ....+..+++|+.|||++|.++. +.- .-.++.+
T Consensus 283 Wq~LtelDLS~N~I~~-iDE----SvKL~Pkir~L~lS~N~i~--~v~nLa~L~~L~~LDLS~N~Ls~-~~G-wh~KLGN 353 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQ-IDE----SVKLAPKLRRLILSQNRIR--TVQNLAELPQLQLLDLSGNLLAE-CVG-WHLKLGN 353 (490)
T ss_pred Hhhhhhccccccchhh-hhh----hhhhccceeEEecccccee--eehhhhhcccceEeecccchhHh-hhh-hHhhhcC
Confidence 4578999999999988 665 7777899999999999998 33458899999999999999987 553 5678889
Q ss_pred CcEEEEe---------cCCCCCCCEEEccCCCCCcC
Q 035976 176 LQLLDLR---------LANLTNLKTLDLRDCGITTI 202 (203)
Q Consensus 176 L~~L~l~---------~~~l~~L~~L~L~~N~l~~i 202 (203)
.+.|.|+ +..+-+|..||+++|+|..+
T Consensus 354 IKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~l 389 (490)
T KOG1259|consen 354 IKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEEL 389 (490)
T ss_pred EeeeehhhhhHhhhhhhHhhhhheeccccccchhhH
Confidence 9999888 67777899999999998653
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.65 E-value=1.7e-08 Score=81.96 Aligned_cols=110 Identities=25% Similarity=0.261 Sum_probs=78.3
Q ss_pred ccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCC----hhhhcCCCCCcEEeccCCCCCCCcc
Q 035976 91 SLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSI----LPYLNTLISLTTLILRENNIEGSRT 166 (203)
Q Consensus 91 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~L~~N~l~~~lp 166 (203)
..+..+++|++|++++|.+++.........+..+++|++|++++|.+++.. +..+..+++|+.|++++|.+++...
T Consensus 159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~ 238 (319)
T cd00116 159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA 238 (319)
T ss_pred HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHH
Confidence 345667889999999999885311111114556789999999999987543 3445678899999999999885111
Q ss_pred hhhhC-----CCCCCcEEEEe---------------cCCCCCCCEEEccCCCCCc
Q 035976 167 IEGLS-----NLRNLQLLDLR---------------LANLTNLKTLDLRDCGITT 201 (203)
Q Consensus 167 ~~~~~-----~l~~L~~L~l~---------------~~~l~~L~~L~L~~N~l~~ 201 (203)
. .+. ..+.|++|+++ +..+++|+.+++++|.++.
T Consensus 239 ~-~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 239 A-ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred H-HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence 1 221 24789999987 4455789999999999874
No 29
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.65 E-value=1.5e-07 Score=84.82 Aligned_cols=35 Identities=20% Similarity=0.169 Sum_probs=18.0
Q ss_pred CCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcc
Q 035976 127 LKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRT 166 (203)
Q Consensus 127 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp 166 (203)
|+.|++++|+++ .+|. ..++|+.|++++|++++ +|
T Consensus 284 L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp 318 (788)
T PRK15387 284 LCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LP 318 (788)
T ss_pred cCEEECcCCccc-cccc---cccccceeECCCCcccc-CC
Confidence 344444444444 2232 12456667777776665 54
No 30
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.64 E-value=1.4e-07 Score=85.04 Aligned_cols=69 Identities=20% Similarity=0.182 Sum_probs=38.1
Q ss_pred CCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCC
Q 035976 97 EELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNL 176 (203)
Q Consensus 97 ~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L 176 (203)
++|++|++++|+++. +|. . .++|+.|++++|.++ .+|.. ...|+.|++++|+++. +|. .+++|
T Consensus 242 ~~Lk~LdLs~N~Lts-LP~----l---p~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~----~p~~L 304 (788)
T PRK15387 242 PELRTLEVSGNQLTS-LPV----L---PPGLLELSIFSNPLT-HLPAL---PSGLCKLWIFGNQLTS-LPV----LPPGL 304 (788)
T ss_pred CCCcEEEecCCccCc-ccC----c---ccccceeeccCCchh-hhhhc---hhhcCEEECcCCcccc-ccc----ccccc
Confidence 455555555555554 342 1 234555555555554 23331 2456677777777776 653 23567
Q ss_pred cEEEEe
Q 035976 177 QLLDLR 182 (203)
Q Consensus 177 ~~L~l~ 182 (203)
+.|+++
T Consensus 305 ~~LdLS 310 (788)
T PRK15387 305 QELSVS 310 (788)
T ss_pred ceeECC
Confidence 777776
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.60 E-value=2.9e-09 Score=90.68 Aligned_cols=104 Identities=28% Similarity=0.320 Sum_probs=77.2
Q ss_pred CccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhh
Q 035976 90 FSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEG 169 (203)
Q Consensus 90 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~ 169 (203)
+..++.+..|+++||+.|+++. +|. .+..++ |+.|-+++|+++ .+|+.++.+..|..||.+.|.+.. +|. .
T Consensus 114 p~~i~~L~~lt~l~ls~NqlS~-lp~----~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~s-lps-q 184 (722)
T KOG0532|consen 114 PEAICNLEALTFLDLSSNQLSH-LPD----GLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQS-LPS-Q 184 (722)
T ss_pred chhhhhhhHHHHhhhccchhhc-CCh----hhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhh-chH-H
Confidence 5667788888889999988887 676 666665 888888888888 688888877888888888888887 776 6
Q ss_pred hCCCCCCcEEEEe----------cCCCCCCCEEEccCCCCCcCC
Q 035976 170 LSNLRNLQLLDLR----------LANLTNLKTLDLRDCGITTIQ 203 (203)
Q Consensus 170 ~~~l~~L~~L~l~----------~~~l~~L~~L~L~~N~l~~ip 203 (203)
++.+.+|+.|.+. +..| .|..||++.|+|+.||
T Consensus 185 l~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iP 227 (722)
T KOG0532|consen 185 LGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLP 227 (722)
T ss_pred hhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecc
Confidence 7777777766665 2222 3566666666666665
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.50 E-value=9.1e-08 Score=80.39 Aligned_cols=60 Identities=33% Similarity=0.408 Sum_probs=28.4
Q ss_pred CCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCC
Q 035976 98 ELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEG 163 (203)
Q Consensus 98 ~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 163 (203)
+|+.|++++|.+.. +|. .+..++.|+.|+++.|+++ .+|......+.|+.|++++|+++.
T Consensus 141 nL~~L~l~~N~i~~-l~~----~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~ 200 (394)
T COG4886 141 NLKELDLSDNKIES-LPS----PLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISD 200 (394)
T ss_pred hcccccccccchhh-hhh----hhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCcccc
Confidence 45555555555554 332 3444555555555555554 233333344444444444444443
No 33
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.48 E-value=1.4e-06 Score=82.68 Aligned_cols=97 Identities=25% Similarity=0.252 Sum_probs=78.3
Q ss_pred CCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCC
Q 035976 95 PFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLR 174 (203)
Q Consensus 95 ~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~ 174 (203)
.+.+|+.|++.+|.+.. ++. .+..+++|+.|+++++.....+| .+..+++|+.|++++|.....+|. .+..++
T Consensus 609 ~~~~L~~L~L~~s~l~~-L~~----~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~-si~~L~ 681 (1153)
T PLN03210 609 RPENLVKLQMQGSKLEK-LWD----GVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPS-SIQYLN 681 (1153)
T ss_pred CccCCcEEECcCccccc-ccc----ccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccch-hhhccC
Confidence 46789999999999887 666 77889999999999876544566 477889999999998765455886 789999
Q ss_pred CCcEEEEe----------cCCCCCCCEEEccCCC
Q 035976 175 NLQLLDLR----------LANLTNLKTLDLRDCG 198 (203)
Q Consensus 175 ~L~~L~l~----------~~~l~~L~~L~L~~N~ 198 (203)
+|+.|+++ ...+++|+.|++++|.
T Consensus 682 ~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 682 KLEDLDMSRCENLEILPTGINLKSLYRLNLSGCS 715 (1153)
T ss_pred CCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCC
Confidence 99999987 2257789999999875
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=6e-08 Score=80.43 Aligned_cols=79 Identities=24% Similarity=0.262 Sum_probs=50.6
Q ss_pred CCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcch-hhhCCCCCCcEEEEe-----------------cC
Q 035976 123 SLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTI-EGLSNLRNLQLLDLR-----------------LA 184 (203)
Q Consensus 123 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~-~~~~~l~~L~~L~l~-----------------~~ 184 (203)
.+|+|+.|+|..|..-..-.....-+..|+.|||++|++.. .+. ...+.++.|+.|+++ ..
T Consensus 220 ~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~ 298 (505)
T KOG3207|consen 220 TFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTH 298 (505)
T ss_pred hCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhhhccccCcchhcCCCccchhhhc
Confidence 34555555555553211222223345678888888888765 441 146678888888887 45
Q ss_pred CCCCCCEEEccCCCCCcC
Q 035976 185 NLTNLKTLDLRDCGITTI 202 (203)
Q Consensus 185 ~l~~L~~L~L~~N~l~~i 202 (203)
.+++|++|++..|+|..+
T Consensus 299 ~f~kL~~L~i~~N~I~~w 316 (505)
T KOG3207|consen 299 TFPKLEYLNISENNIRDW 316 (505)
T ss_pred ccccceeeecccCccccc
Confidence 678899999999998654
No 35
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.31 E-value=9.3e-07 Score=50.67 Aligned_cols=37 Identities=35% Similarity=0.477 Sum_probs=18.8
Q ss_pred CCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCC
Q 035976 126 QLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEG 163 (203)
Q Consensus 126 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 163 (203)
+|++|++++|+++ .+|+.+..+++|+.|++++|+++.
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 4555555555555 344445555555555555555554
No 36
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.23 E-value=1.9e-08 Score=88.09 Aligned_cols=99 Identities=30% Similarity=0.335 Sum_probs=72.1
Q ss_pred cCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhC
Q 035976 92 LFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLS 171 (203)
Q Consensus 92 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~ 171 (203)
.+.-++.++.|+|+.|+++. +. .+..++.|++|||++|.+. .+|..-..-..|+.|.+++|.++. +- .+.
T Consensus 182 SLqll~ale~LnLshNk~~~-v~-----~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~t-L~--gie 251 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTK-VD-----NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTT-LR--GIE 251 (1096)
T ss_pred HHHHHHHhhhhccchhhhhh-hH-----HHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHh-hh--hHH
Confidence 34446788888888888887 32 6777888888888888887 455422222338888888888876 53 578
Q ss_pred CCCCCcEEEEe------------cCCCCCCCEEEccCCCCC
Q 035976 172 NLRNLQLLDLR------------LANLTNLKTLDLRDCGIT 200 (203)
Q Consensus 172 ~l~~L~~L~l~------------~~~l~~L~~L~L~~N~l~ 200 (203)
++.+|+.||++ ++.+..|+.|.|.+|.+-
T Consensus 252 ~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 88888888888 555667788888888764
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.18 E-value=1.2e-06 Score=73.56 Aligned_cols=64 Identities=28% Similarity=0.410 Sum_probs=46.3
Q ss_pred ccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCC
Q 035976 91 SLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENN 160 (203)
Q Consensus 91 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~ 160 (203)
..+..++.|+.|++++|+++. +|. ....++.|+.|++++|++. .+|..+.....|+.+.+++|+
T Consensus 157 ~~~~~l~~L~~L~l~~N~l~~-l~~----~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 157 SPLRNLPNLKNLDLSFNDLSD-LPK----LLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred hhhhccccccccccCCchhhh-hhh----hhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCc
Confidence 456778888888888888887 565 4446778888888888887 566555455557777777774
No 38
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.15 E-value=3.6e-06 Score=48.19 Aligned_cols=37 Identities=32% Similarity=0.421 Sum_probs=32.0
Q ss_pred CCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCC
Q 035976 97 EELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFN 138 (203)
Q Consensus 97 ~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~ 138 (203)
++|++|++++|+++. +|+ .+..+++|++|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~~-l~~----~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITD-LPP----ELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SS-HGG----HGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcc-cCc----hHhCCCCCCEEEecCCCCC
Confidence 478999999999998 776 7999999999999999998
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.14 E-value=2.9e-07 Score=78.81 Aligned_cols=103 Identities=24% Similarity=0.283 Sum_probs=80.0
Q ss_pred CccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhh
Q 035976 90 FSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEG 169 (203)
Q Consensus 90 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~ 169 (203)
|..++.| -|+.|-+++|+++. +|. .++.++.|..||.+.|.+. .+|..+..+.+|+.|.+..|++.. +|. .
T Consensus 137 p~~lC~l-pLkvli~sNNkl~~-lp~----~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~-E 207 (722)
T KOG0532|consen 137 PDGLCDL-PLKVLIVSNNKLTS-LPE----EIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPE-E 207 (722)
T ss_pred ChhhhcC-cceeEEEecCcccc-CCc----ccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCH-H
Confidence 4445544 47888888888887 777 7787888888888888887 677888888888888888888887 776 5
Q ss_pred hCCCCCCcEEEEe----------cCCCCCCCEEEccCCCCCcC
Q 035976 170 LSNLRNLQLLDLR----------LANLTNLKTLDLRDCGITTI 202 (203)
Q Consensus 170 ~~~l~~L~~L~l~----------~~~l~~L~~L~L~~N~l~~i 202 (203)
+.. -.|..||++ |..|+.|++|-|.+|.+..-
T Consensus 208 l~~-LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 208 LCS-LPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred HhC-CceeeeecccCceeecchhhhhhhhheeeeeccCCCCCC
Confidence 664 356777777 78888888888888887653
No 40
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.13 E-value=4.4e-06 Score=63.09 Aligned_cols=88 Identities=25% Similarity=0.224 Sum_probs=54.7
Q ss_pred ccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCC-ChhhhcCCCCCcEEeccCCCCCCC--cch
Q 035976 91 SLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDS-ILPYLNTLISLTTLILRENNIEGS--RTI 167 (203)
Q Consensus 91 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~--lp~ 167 (203)
..|..++.|.+|.+++|.|+..-|. --.-+++|+.|.|.+|.+... .-..+..+++|++|.+-+|.++.. .-.
T Consensus 58 ~~lp~l~rL~tLll~nNrIt~I~p~----L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~ 133 (233)
T KOG1644|consen 58 DNLPHLPRLHTLLLNNNRITRIDPD----LDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRL 133 (233)
T ss_pred ccCCCccccceEEecCCcceeeccc----hhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCcee
Confidence 4566677777888888887774443 223356677888877777521 113455677788888777777641 111
Q ss_pred hhhCCCCCCcEEEEe
Q 035976 168 EGLSNLRNLQLLDLR 182 (203)
Q Consensus 168 ~~~~~l~~L~~L~l~ 182 (203)
..+..+|+|+.||..
T Consensus 134 yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 134 YVLYKLPSLRTLDFQ 148 (233)
T ss_pred EEEEecCcceEeehh
Confidence 235567777777765
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.12 E-value=7.3e-07 Score=75.63 Aligned_cols=101 Identities=37% Similarity=0.449 Sum_probs=72.3
Q ss_pred cCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhC
Q 035976 92 LFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLS 171 (203)
Q Consensus 92 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~ 171 (203)
.+..+++|+.|++.+|.+.. +.. .+..+++|++|++++|.|+.. ..+..++.|+.|++++|.++. ++ .+.
T Consensus 90 ~l~~~~~l~~l~l~~n~i~~-i~~----~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~-~~--~~~ 159 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKIEK-IEN----LLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISD-IS--GLE 159 (414)
T ss_pred ccccccceeeeeccccchhh-ccc----chhhhhcchheeccccccccc--cchhhccchhhheeccCcchh-cc--CCc
Confidence 46677888888888888887 442 367788888888888888743 345566668888888888887 54 466
Q ss_pred CCCCCcEEEEe--------c---CCCCCCCEEEccCCCCCcC
Q 035976 172 NLRNLQLLDLR--------L---ANLTNLKTLDLRDCGITTI 202 (203)
Q Consensus 172 ~l~~L~~L~l~--------~---~~l~~L~~L~L~~N~l~~i 202 (203)
.++.|+.++++ - ..+.+++.+.++.|.+..+
T Consensus 160 ~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 160 SLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI 201 (414)
T ss_pred cchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc
Confidence 67777777776 2 4556677777777776544
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.08 E-value=2.6e-06 Score=78.24 Aligned_cols=87 Identities=28% Similarity=0.246 Sum_probs=67.4
Q ss_pred CccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhh
Q 035976 90 FSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEG 169 (203)
Q Consensus 90 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~ 169 (203)
...|..++.|++|||++|.=-+.+|. .++.+-+|++|+++...+. .+|..+.+++.|.+|++..+.-...+| ..
T Consensus 564 ~~ff~~m~~LrVLDLs~~~~l~~LP~----~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~-~i 637 (889)
T KOG4658|consen 564 GEFFRSLPLLRVLDLSGNSSLSKLPS----SIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIP-GI 637 (889)
T ss_pred HHHHhhCcceEEEECCCCCccCcCCh----HHhhhhhhhcccccCCCcc-ccchHHHHHHhhheecccccccccccc-ch
Confidence 44577788888888888765555787 8888888888888888888 788888888888888888776554354 35
Q ss_pred hCCCCCCcEEEEe
Q 035976 170 LSNLRNLQLLDLR 182 (203)
Q Consensus 170 ~~~l~~L~~L~l~ 182 (203)
...+.+|++|.+.
T Consensus 638 ~~~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 638 LLELQSLRVLRLP 650 (889)
T ss_pred hhhcccccEEEee
Confidence 6668888888876
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.02 E-value=4.9e-06 Score=76.40 Aligned_cols=95 Identities=28% Similarity=0.362 Sum_probs=80.1
Q ss_pred CCCCEEEccCCc--CCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCC
Q 035976 97 EELQSLDLSLNA--FEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLR 174 (203)
Q Consensus 97 ~~L~~L~L~~N~--l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~ 174 (203)
+.|++|-+..|. +....+. .|..++.|++|||++|.--+.+|..++.+-+|++|+++...++. +|. .+.++.
T Consensus 545 ~~L~tLll~~n~~~l~~is~~----ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~-LP~-~l~~Lk 618 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGE----FFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISH-LPS-GLGNLK 618 (889)
T ss_pred CccceEEEeecchhhhhcCHH----HHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccc-cch-HHHHHH
Confidence 368899998886 4442232 58889999999999988777999999999999999999999998 997 899999
Q ss_pred CCcEEEEe-----------cCCCCCCCEEEccCC
Q 035976 175 NLQLLDLR-----------LANLTNLKTLDLRDC 197 (203)
Q Consensus 175 ~L~~L~l~-----------~~~l~~L~~L~L~~N 197 (203)
.|.+|++. ...+.+|++|.+..-
T Consensus 619 ~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 619 KLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred hhheeccccccccccccchhhhcccccEEEeecc
Confidence 99999998 334889999987654
No 44
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=3.6e-07 Score=75.95 Aligned_cols=108 Identities=30% Similarity=0.359 Sum_probs=73.0
Q ss_pred ccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhh-hcCCCCCcEEeccCCCCCCCcchhh
Q 035976 91 SLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPY-LNTLISLTTLILRENNIEGSRTIEG 169 (203)
Q Consensus 91 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~lp~~~ 169 (203)
.....|++|+.|+|+.|.+....... .-..+++|+.|.++.|.++...-.. ...+|+|+.|+|..|.... +....
T Consensus 166 ~i~eqLp~Le~LNls~Nrl~~~~~s~---~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~-~~~~~ 241 (505)
T KOG3207|consen 166 KIAEQLPSLENLNLSSNRLSNFISSN---TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL-IKATS 241 (505)
T ss_pred HHHHhcccchhcccccccccCCcccc---chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc-eecch
Confidence 44567888888888888876533220 1124677888888888887543333 3567888888888885332 22223
Q ss_pred hCCCCCCcEEEEe------------cCCCCCCCEEEccCCCCCcC
Q 035976 170 LSNLRNLQLLDLR------------LANLTNLKTLDLRDCGITTI 202 (203)
Q Consensus 170 ~~~l~~L~~L~l~------------~~~l~~L~~L~L~~N~l~~i 202 (203)
...+..|+.|||+ .+.++.|+.|+++.+.|..|
T Consensus 242 ~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si 286 (505)
T KOG3207|consen 242 TKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASI 286 (505)
T ss_pred hhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchh
Confidence 4556678888887 67788888888888887765
No 45
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.98 E-value=5.3e-07 Score=64.17 Aligned_cols=84 Identities=24% Similarity=0.279 Sum_probs=64.6
Q ss_pred ccCCCCCCCCEEEccCCcCCCcccchhhhcc-CCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhh
Q 035976 91 SLFHPFEELQSLDLSLNAFEGFYENRAYDSN-GSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEG 169 (203)
Q Consensus 91 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~ 169 (203)
..+.+..+|+..+|++|.+.. +|+ .| ..++.++.+++++|+++ .+|..+..++.|+.|+++.|.+.. .|. .
T Consensus 47 y~l~~~~el~~i~ls~N~fk~-fp~----kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~-~p~-v 118 (177)
T KOG4579|consen 47 YMLSKGYELTKISLSDNGFKK-FPK----KFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNA-EPR-V 118 (177)
T ss_pred HHHhCCceEEEEecccchhhh-CCH----HHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCcccc-chH-H
Confidence 345566788888999999988 565 44 34568899999999998 688889999999999999999987 664 6
Q ss_pred hCCCCCCcEEEEe
Q 035976 170 LSNLRNLQLLDLR 182 (203)
Q Consensus 170 ~~~l~~L~~L~l~ 182 (203)
+..+.+|-.|+..
T Consensus 119 i~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 119 IAPLIKLDMLDSP 131 (177)
T ss_pred HHHHHhHHHhcCC
Confidence 6666666665543
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.97 E-value=2.8e-07 Score=81.00 Aligned_cols=95 Identities=31% Similarity=0.342 Sum_probs=77.5
Q ss_pred CCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCc
Q 035976 98 ELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQ 177 (203)
Q Consensus 98 ~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~ 177 (203)
.|.+.+.+.|.+.. ... ++.-++.|+.|+|++|+++. + +.+..+++|++|||++|.+.. +|.-....+. |+
T Consensus 165 ~L~~a~fsyN~L~~-mD~----SLqll~ale~LnLshNk~~~-v-~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~-L~ 235 (1096)
T KOG1859|consen 165 KLATASFSYNRLVL-MDE----SLQLLPALESLNLSHNKFTK-V-DNLRRLPKLKHLDLSYNCLRH-VPQLSMVGCK-LQ 235 (1096)
T ss_pred hHhhhhcchhhHHh-HHH----HHHHHHHhhhhccchhhhhh-h-HHHHhcccccccccccchhcc-ccccchhhhh-he
Confidence 56778888898886 444 67778999999999999983 3 488899999999999999997 7752233443 88
Q ss_pred EEEEe---------cCCCCCCCEEEccCCCCCc
Q 035976 178 LLDLR---------LANLTNLKTLDLRDCGITT 201 (203)
Q Consensus 178 ~L~l~---------~~~l~~L~~L~L~~N~l~~ 201 (203)
.|.++ +.++.+|+.||+++|-|++
T Consensus 236 ~L~lrnN~l~tL~gie~LksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 236 LLNLRNNALTTLRGIENLKSLYGLDLSYNLLSE 268 (1096)
T ss_pred eeeecccHHHhhhhHHhhhhhhccchhHhhhhc
Confidence 88887 8889999999999998764
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.91 E-value=2.8e-06 Score=72.11 Aligned_cols=100 Identities=35% Similarity=0.414 Sum_probs=82.4
Q ss_pred CCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCC
Q 035976 94 HPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNL 173 (203)
Q Consensus 94 ~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l 173 (203)
..+..+..+.+..|.+.. +-. .+..+++|..+++..|++. .+...+..+++|++|++++|.|+. +. .+..+
T Consensus 69 ~~l~~l~~l~l~~n~i~~-~~~----~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~-i~--~l~~l 139 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAK-ILN----HLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITK-LE--GLSTL 139 (414)
T ss_pred HHhHhHHhhccchhhhhh-hhc----ccccccceeeeeccccchh-hcccchhhhhcchheecccccccc-cc--chhhc
Confidence 456777788889998876 333 5788999999999999998 343437789999999999999998 64 47788
Q ss_pred CCCcEEEEe---------cCCCCCCCEEEccCCCCCcC
Q 035976 174 RNLQLLDLR---------LANLTNLKTLDLRDCGITTI 202 (203)
Q Consensus 174 ~~L~~L~l~---------~~~l~~L~~L~L~~N~l~~i 202 (203)
+.|+.|+++ +..+++|+.+++++|++..+
T Consensus 140 ~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~i 177 (414)
T KOG0531|consen 140 TLLKELNLSGNLISDISGLESLKSLKLLDLSYNRIVDI 177 (414)
T ss_pred cchhhheeccCcchhccCCccchhhhcccCCcchhhhh
Confidence 889999998 66688999999999998765
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.90 E-value=1.4e-06 Score=62.03 Aligned_cols=90 Identities=21% Similarity=0.230 Sum_probs=74.6
Q ss_pred CCCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCC
Q 035976 61 TRRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDS 140 (203)
Q Consensus 61 ~~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~ 140 (203)
...++.++++++ .+... ++.....++.++.|++.+|.+.. +|. ++..++.|+.|++++|.+. .
T Consensus 52 ~~el~~i~ls~N---~fk~f--------p~kft~kf~t~t~lNl~~neisd-vPe----E~Aam~aLr~lNl~~N~l~-~ 114 (177)
T KOG4579|consen 52 GYELTKISLSDN---GFKKF--------PKKFTIKFPTATTLNLANNEISD-VPE----ELAAMPALRSLNLRFNPLN-A 114 (177)
T ss_pred CceEEEEecccc---hhhhC--------CHHHhhccchhhhhhcchhhhhh-chH----HHhhhHHhhhcccccCccc-c
Confidence 345777777777 55543 34555667899999999999999 898 8999999999999999998 6
Q ss_pred ChhhhcCCCCCcEEeccCCCCCCCcchh
Q 035976 141 ILPYLNTLISLTTLILRENNIEGSRTIE 168 (203)
Q Consensus 141 ~p~~~~~l~~L~~L~L~~N~l~~~lp~~ 168 (203)
.|..+..+.+|-.|+..+|.+.. +|.+
T Consensus 115 ~p~vi~~L~~l~~Lds~~na~~e-id~d 141 (177)
T KOG4579|consen 115 EPRVIAPLIKLDMLDSPENARAE-IDVD 141 (177)
T ss_pred chHHHHHHHhHHHhcCCCCcccc-CcHH
Confidence 78888889999999999998876 7764
No 49
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.81 E-value=2.1e-05 Score=70.56 Aligned_cols=100 Identities=24% Similarity=0.348 Sum_probs=69.7
Q ss_pred CCCCCCEEEccCCcCCCc-ccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCC
Q 035976 95 PFEELQSLDLSLNAFEGF-YENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNL 173 (203)
Q Consensus 95 ~l~~L~~L~L~~N~l~~~-~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l 173 (203)
-||.|+.|.+.+-.+... ... -..++|+|..||+++.+++.. ..++.+++|+.|.+.+=.+...-....+..|
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~----lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L 219 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQ----LCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNL 219 (699)
T ss_pred hCcccceEEecCceecchhHHH----HhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcc
Confidence 477888888777665442 111 345678888888888888733 6777888888887777665531112256778
Q ss_pred CCCcEEEEe-----------------cCCCCCCCEEEccCCCCC
Q 035976 174 RNLQLLDLR-----------------LANLTNLKTLDLRDCGIT 200 (203)
Q Consensus 174 ~~L~~L~l~-----------------~~~l~~L~~L~L~~N~l~ 200 (203)
++|++||+| -..+|.|+.||.|++.+.
T Consensus 220 ~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 220 KKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred cCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 888888888 466888899998877654
No 50
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.78 E-value=3.9e-05 Score=58.07 Aligned_cols=94 Identities=28% Similarity=0.377 Sum_probs=75.1
Q ss_pred CCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcc-hhhhCCCC
Q 035976 96 FEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRT-IEGLSNLR 174 (203)
Q Consensus 96 l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp-~~~~~~l~ 174 (203)
+.+...+||++|.+-. ++ .|..++.|.+|.+++|.|+...|.--..+++|+.|.|.+|++.. +. ...+..+|
T Consensus 41 ~d~~d~iDLtdNdl~~-l~-----~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~-l~dl~pLa~~p 113 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRK-LD-----NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQE-LGDLDPLASCP 113 (233)
T ss_pred ccccceecccccchhh-cc-----cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhh-hhhcchhccCC
Confidence 3467789999999876 44 68889999999999999997666555567889999999999985 32 12467788
Q ss_pred CCcEEEEe--------------cCCCCCCCEEEccC
Q 035976 175 NLQLLDLR--------------LANLTNLKTLDLRD 196 (203)
Q Consensus 175 ~L~~L~l~--------------~~~l~~L~~L~L~~ 196 (203)
+|++|.+- +..+++|+.||.+.
T Consensus 114 ~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 114 KLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 99888774 78889999999753
No 51
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.72 E-value=1.4e-05 Score=64.82 Aligned_cols=55 Identities=29% Similarity=0.331 Sum_probs=28.9
Q ss_pred hcCCCCCcEEeccCCCCCC----CcchhhhCCCCCCcEEEEe----------------cCCCCCCCEEEccCCCCC
Q 035976 145 LNTLISLTTLILRENNIEG----SRTIEGLSNLRNLQLLDLR----------------LANLTNLKTLDLRDCGIT 200 (203)
Q Consensus 145 ~~~l~~L~~L~L~~N~l~~----~lp~~~~~~l~~L~~L~l~----------------~~~l~~L~~L~L~~N~l~ 200 (203)
+..+++|+.|||..|-++. .+. ..+..+++|+.|+++ -...++|+.|.+++|.|+
T Consensus 209 l~~~~~LevLdl~DNtft~egs~~La-kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 209 LEHCPHLEVLDLRDNTFTLEGSVALA-KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred HHhCCcceeeecccchhhhHHHHHHH-HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 4455566666666665552 111 134455555565555 233556666666666554
No 52
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.63 E-value=3.5e-05 Score=60.25 Aligned_cols=84 Identities=30% Similarity=0.318 Sum_probs=51.7
Q ss_pred ccCCCCCCCCEEEccCC--cCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhh---hcCCCCCcEEeccCCCCCCCc
Q 035976 91 SLFHPFEELQSLDLSLN--AFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPY---LNTLISLTTLILRENNIEGSR 165 (203)
Q Consensus 91 ~~~~~l~~L~~L~L~~N--~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~---~~~l~~L~~L~L~~N~l~~~l 165 (203)
..+-.|++|+.|.++.| ++.+.++. -...+++|++++++.|++.. +.. ...+.+|..|++.++..+. +
T Consensus 59 ~~~P~Lp~LkkL~lsdn~~~~~~~l~v----l~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~-l 131 (260)
T KOG2739|consen 59 TNFPKLPKLKKLELSDNYRRVSGGLEV----LAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTN-L 131 (260)
T ss_pred ccCCCcchhhhhcccCCccccccccee----hhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCccc-c
Confidence 44556777888888888 55544444 44456888888888888762 333 3445566677777776654 2
Q ss_pred c---hhhhCCCCCCcEEEE
Q 035976 166 T---IEGLSNLRNLQLLDL 181 (203)
Q Consensus 166 p---~~~~~~l~~L~~L~l 181 (203)
- ...|.-+++|++|+-
T Consensus 132 ~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 132 DDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred ccHHHHHHHHhhhhccccc
Confidence 1 123555666666654
No 53
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.57 E-value=3.3e-05 Score=62.76 Aligned_cols=77 Identities=25% Similarity=0.395 Sum_probs=36.5
Q ss_pred CCCCCEEEccCCCCCCCC----hhhhcCCCCCcEEeccCCCCCCC---cchhhhCCCCCCcEEEEe--------------
Q 035976 124 LKQLKILNLEANHFNDSI----LPYLNTLISLTTLILRENNIEGS---RTIEGLSNLRNLQLLDLR-------------- 182 (203)
Q Consensus 124 l~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~L~~N~l~~~---lp~~~~~~l~~L~~L~l~-------------- 182 (203)
-+.|+++...+|++...- ...|...+.|+.+.+..|.|... +-...|..+++|++|||.
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 344555555555443211 12333445555555555544310 111234555666666665
Q ss_pred -cCCCCCCCEEEccCCCCC
Q 035976 183 -LANLTNLKTLDLRDCGIT 200 (203)
Q Consensus 183 -~~~l~~L~~L~L~~N~l~ 200 (203)
+..++.|+.|+++++.++
T Consensus 236 aL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred Hhcccchheeecccccccc
Confidence 555556666666655543
No 54
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.57 E-value=3e-05 Score=60.60 Aligned_cols=93 Identities=29% Similarity=0.307 Sum_probs=66.1
Q ss_pred CCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCC--CCCCCChhhhcCCCCCcEEeccCCCCCC--Ccchh
Q 035976 93 FHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEAN--HFNDSILPYLNTLISLTTLILRENNIEG--SRTIE 168 (203)
Q Consensus 93 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n--~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~lp~~ 168 (203)
...+..|+.+.+.+..++. +- .+..+++|+.|.++.| .+.+.++.....+++|+++++++|+++. +++
T Consensus 39 ~d~~~~le~ls~~n~gltt-~~-----~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-- 110 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTT-LT-----NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-- 110 (260)
T ss_pred cccccchhhhhhhccceee-cc-----cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc--
Confidence 3345566667777666665 22 5667999999999999 6665566666677999999999999884 233
Q ss_pred hhCCCCCCcEEEEe--------------cCCCCCCCEEE
Q 035976 169 GLSNLRNLQLLDLR--------------LANLTNLKTLD 193 (203)
Q Consensus 169 ~~~~l~~L~~L~l~--------------~~~l~~L~~L~ 193 (203)
....+.+|..|++. |.-+++|++||
T Consensus 111 pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 111 PLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 35666777777776 55666666665
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.31 E-value=0.00011 Score=66.14 Aligned_cols=97 Identities=28% Similarity=0.401 Sum_probs=73.9
Q ss_pred CCCCEEEccCCcCC-Ccccchhhhcc-CCCCCCCEEEccCCCCCCC-ChhhhcCCCCCcEEeccCCCCCCCcchhhhCCC
Q 035976 97 EELQSLDLSLNAFE-GFYENRAYDSN-GSLKQLKILNLEANHFNDS-ILPYLNTLISLTTLILRENNIEGSRTIEGLSNL 173 (203)
Q Consensus 97 ~~L~~L~L~~N~l~-~~~p~~~~~~l-~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l 173 (203)
.+|++|++++.... ...|. .+ .-+|.|+.|.+.+-.+... ......++++|..||+++.+++. + ..++.+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~----kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l--~GIS~L 194 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPK----KIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L--SGISRL 194 (699)
T ss_pred HhhhhcCccccchhhccHHH----HHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c--HHHhcc
Confidence 47888999886532 21332 22 3489999999998777532 23445789999999999999987 6 368999
Q ss_pred CCCcEEEEe------------cCCCCCCCEEEccCCCCC
Q 035976 174 RNLQLLDLR------------LANLTNLKTLDLRDCGIT 200 (203)
Q Consensus 174 ~~L~~L~l~------------~~~l~~L~~L~L~~N~l~ 200 (203)
++|++|.+. +..|++|+.||+|..+..
T Consensus 195 knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 195 KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN 233 (699)
T ss_pred ccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence 999999887 778999999999987643
No 56
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.22 E-value=0.00052 Score=54.51 Aligned_cols=109 Identities=27% Similarity=0.238 Sum_probs=79.1
Q ss_pred ccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhh-------------hcCCCCCcEEecc
Q 035976 91 SLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPY-------------LNTLISLTTLILR 157 (203)
Q Consensus 91 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~-------------~~~l~~L~~L~L~ 157 (203)
+.+.++++|+.++||+|.|....|......+++-+.|.+|.+++|.+...-... ...-|.|+.....
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 456788999999999999987777644445677889999999999986322211 2345789999999
Q ss_pred CCCCCCCcchh----hhCCCCCCcEEEEe----------------cCCCCCCCEEEccCCCCC
Q 035976 158 ENNIEGSRTIE----GLSNLRNLQLLDLR----------------LANLTNLKTLDLRDCGIT 200 (203)
Q Consensus 158 ~N~l~~~lp~~----~~~~l~~L~~L~l~----------------~~~l~~L~~L~L~~N~l~ 200 (203)
.|++.. .|.. .+.....|+.+.+. ...+.+|+.|||+.|-|+
T Consensus 166 rNRlen-gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 166 RNRLEN-GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred cchhcc-CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 999875 3321 23334567777665 567788999999999875
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.98 E-value=0.00046 Score=55.45 Aligned_cols=67 Identities=24% Similarity=0.307 Sum_probs=46.8
Q ss_pred CccCCCCCCCCEEEccCCcCCCcccchhhhcc-CCCCCCCEEEccCCCCCCCChh-hhcCCCCCcEEeccCCCC
Q 035976 90 FSLFHPFEELQSLDLSLNAFEGFYENRAYDSN-GSLKQLKILNLEANHFNDSILP-YLNTLISLTTLILRENNI 161 (203)
Q Consensus 90 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l-~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~N~l 161 (203)
...+.++++|++|+++.|++...|. .+ ....+|++|-|.+..+.+.... .+..+|.++.|+++.|.+
T Consensus 90 ~~ile~lP~l~~LNls~N~L~s~I~-----~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 90 GAILEQLPALTTLNLSCNSLSSDIK-----SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred HHHHhcCccceEeeccCCcCCCccc-----cCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence 3456789999999999999887554 33 2456788888888777654443 345667777777777743
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.85 E-value=0.00042 Score=55.71 Aligned_cols=85 Identities=21% Similarity=0.294 Sum_probs=53.7
Q ss_pred CCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCC
Q 035976 96 FEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRN 175 (203)
Q Consensus 96 l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~ 175 (203)
.+.++.+||.+|.++.- ... +.-+.++|.|++|+++.|.+...+-..-....+|+.|-|.+..+...-....+..+|.
T Consensus 70 ~~~v~elDL~~N~iSdW-seI-~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDW-SEI-GAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred hhhhhhhhcccchhccH-HHH-HHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 46778888888888752 211 1145678888888888888874332211456678888888877664222223455666
Q ss_pred CcEEEEe
Q 035976 176 LQLLDLR 182 (203)
Q Consensus 176 L~~L~l~ 182 (203)
++.|+++
T Consensus 148 vtelHmS 154 (418)
T KOG2982|consen 148 VTELHMS 154 (418)
T ss_pred hhhhhhc
Confidence 6666554
No 59
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.85 E-value=4.6e-05 Score=60.49 Aligned_cols=99 Identities=30% Similarity=0.258 Sum_probs=72.8
Q ss_pred CeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCCh
Q 035976 63 RVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSIL 142 (203)
Q Consensus 63 ~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p 142 (203)
.|..|++.|. +|.+. ....+++.|++|.|+-|+++..- .+..++.|+.|.|..|.|....-
T Consensus 20 ~vkKLNcwg~---~L~DI----------sic~kMp~lEVLsLSvNkIssL~------pl~rCtrLkElYLRkN~I~sldE 80 (388)
T KOG2123|consen 20 NVKKLNCWGC---GLDDI----------SICEKMPLLEVLSLSVNKISSLA------PLQRCTRLKELYLRKNCIESLDE 80 (388)
T ss_pred HhhhhcccCC---CccHH----------HHHHhcccceeEEeeccccccch------hHHHHHHHHHHHHHhcccccHHH
Confidence 4556666666 55443 45678899999999999998833 46789999999999999984322
Q ss_pred -hhhcCCCCCcEEeccCCCCCCCcch----hhhCCCCCCcEEE
Q 035976 143 -PYLNTLISLTTLILRENNIEGSRTI----EGLSNLRNLQLLD 180 (203)
Q Consensus 143 -~~~~~l~~L~~L~L~~N~l~~~lp~----~~~~~l~~L~~L~ 180 (203)
..+.++++|+.|.|..|.-.+.-+. ..+..+|+|+.||
T Consensus 81 L~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 81 LEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 3568999999999999988774332 2355677777775
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.74 E-value=0.0083 Score=41.88 Aligned_cols=83 Identities=16% Similarity=0.208 Sum_probs=35.4
Q ss_pred CccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhh
Q 035976 90 FSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEG 169 (203)
Q Consensus 90 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~ 169 (203)
...|...+.|+.+.+..+ +.. ++.. .+..++.++.+.+.. .+.......|..+++|+.+.+..+ +.. ++...
T Consensus 28 ~~~F~~~~~l~~i~~~~~-~~~-i~~~---~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~-i~~~~ 99 (129)
T PF13306_consen 28 ENAFSNCTSLKSINFPNN-LTS-IGDN---AFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITE-IGSSS 99 (129)
T ss_dssp TTTTTT-TT-SEEEESST-TSC-E-TT---TTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BE-EHTTT
T ss_pred hhhccccccccccccccc-ccc-ccee---eeecccccccccccc-cccccccccccccccccccccCcc-ccE-Echhh
Confidence 445566666666666554 444 2221 455555566666644 322122234445666666666544 433 44444
Q ss_pred hCCCCCCcEEEE
Q 035976 170 LSNLRNLQLLDL 181 (203)
Q Consensus 170 ~~~l~~L~~L~l 181 (203)
|... .|+.+.+
T Consensus 100 f~~~-~l~~i~~ 110 (129)
T PF13306_consen 100 FSNC-NLKEINI 110 (129)
T ss_dssp TTT--T--EEE-
T ss_pred hcCC-CceEEEE
Confidence 5554 5555543
No 61
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.63 E-value=0.0012 Score=29.57 Aligned_cols=17 Identities=41% Similarity=0.675 Sum_probs=9.2
Q ss_pred CCCCEEEccCCCCCcCC
Q 035976 187 TNLKTLDLRDCGITTIQ 203 (203)
Q Consensus 187 ~~L~~L~L~~N~l~~ip 203 (203)
++|+.|+|++|+|+.+|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 35777777777777765
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.43 E-value=9.1e-05 Score=58.87 Aligned_cols=89 Identities=33% Similarity=0.374 Sum_probs=68.2
Q ss_pred CCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcch-hhhCCCC
Q 035976 96 FEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTI-EGLSNLR 174 (203)
Q Consensus 96 l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~-~~~~~l~ 174 (203)
+.+.+.|++=++.++. |. -...|+.|++|.|+-|+++. -..+..++.|+.|+|..|.|.. +.. .-+.+++
T Consensus 18 l~~vkKLNcwg~~L~D-Is-----ic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~s-ldEL~YLknlp 88 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD-IS-----ICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIES-LDELEYLKNLP 88 (388)
T ss_pred HHHhhhhcccCCCccH-HH-----HHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhccccc-HHHHHHHhcCc
Confidence 5566778888888776 33 45679999999999999983 3457789999999999999987 542 1356888
Q ss_pred CCcEEEEe----------------cCCCCCCCEEE
Q 035976 175 NLQLLDLR----------------LANLTNLKTLD 193 (203)
Q Consensus 175 ~L~~L~l~----------------~~~l~~L~~L~ 193 (203)
+|+.|.|. +..+|+|+.||
T Consensus 89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 88888886 56677777766
No 63
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.00026 Score=56.87 Aligned_cols=56 Identities=29% Similarity=0.249 Sum_probs=23.6
Q ss_pred CCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEecc
Q 035976 99 LQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILR 157 (203)
Q Consensus 99 L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 157 (203)
|+++||++..++..--. .-++.+.+|+.|.+.++++.+.+...+..-..|+.|+++
T Consensus 187 lq~lDLS~s~it~stl~---~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnls 242 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLH---GILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLS 242 (419)
T ss_pred hHHhhcchhheeHHHHH---HHHHHHHhhhhccccccccCcHHHHHHhccccceeeccc
Confidence 55555555544421000 023334445555555555544333334444444444443
No 64
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.00089 Score=53.89 Aligned_cols=101 Identities=21% Similarity=0.165 Sum_probs=49.8
Q ss_pred CCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCC---CCChhhhcCCCCCcEEeccCCC-CCCCcchh
Q 035976 93 FHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFN---DSILPYLNTLISLTTLILRENN-IEGSRTIE 168 (203)
Q Consensus 93 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~---~~~p~~~~~l~~L~~L~L~~N~-l~~~lp~~ 168 (203)
+..++.|..|+++.+.++...-...-..+ -++|..|+++++.-. ..+..-...+++|..|||+.+. ++...- .
T Consensus 256 ~~scs~L~~LNlsWc~l~~~~Vtv~V~hi--se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~-~ 332 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFLFTEKVTVAVAHI--SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCF-Q 332 (419)
T ss_pred HHhhhhHhhcCchHhhccchhhhHHHhhh--chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHH-H
Confidence 44556666666666655432211000011 123444444443211 0111222456777777777653 333222 2
Q ss_pred hhCCCCCCcEEEEe------------cCCCCCCCEEEccC
Q 035976 169 GLSNLRNLQLLDLR------------LANLTNLKTLDLRD 196 (203)
Q Consensus 169 ~~~~l~~L~~L~l~------------~~~l~~L~~L~L~~ 196 (203)
.|.+++.|++|.++ +...++|.+|++.+
T Consensus 333 ~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 333 EFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred HHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecc
Confidence 56667777777766 66667777777543
No 65
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.65 E-value=0.0033 Score=30.12 Aligned_cols=11 Identities=45% Similarity=0.477 Sum_probs=4.2
Q ss_pred CEEEccCCcCC
Q 035976 100 QSLDLSLNAFE 110 (203)
Q Consensus 100 ~~L~L~~N~l~ 110 (203)
++|++++|.++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33333333333
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.62 E-value=0.022 Score=39.71 Aligned_cols=98 Identities=19% Similarity=0.262 Sum_probs=47.2
Q ss_pred CccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhh
Q 035976 90 FSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEG 169 (203)
Q Consensus 90 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~ 169 (203)
...|.+.++|+.+.+.. .+.. ++.. .|..+++|+.+.+..+ +...-...|..++.++.+.+.. .+.. ++...
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~-I~~~---~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~-i~~~~ 76 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKK-IGEN---AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKS-IGDNA 76 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--E-E-TT---TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-E-E-TTT
T ss_pred HHHHhCCCCCCEEEECC-CeeE-eChh---hccccccccccccccc-ccccceeeeecccccccccccc-cccc-ccccc
Confidence 44566667777777764 4454 3331 5666667777777664 4433334556666677777754 4433 44445
Q ss_pred hCCCCCCcEEEEe----------cCCCCCCCEEEccC
Q 035976 170 LSNLRNLQLLDLR----------LANLTNLKTLDLRD 196 (203)
Q Consensus 170 ~~~l~~L~~L~l~----------~~~l~~L~~L~L~~ 196 (203)
|..+++|+.+.+. +... .|+.+.+..
T Consensus 77 F~~~~~l~~i~~~~~~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 77 FSNCTNLKNIDIPSNITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTT-TTECEEEETTT-BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccccccCccccEEchhhhcCC-CceEEEECC
Confidence 6667777777764 5554 666666553
No 67
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.59 E-value=0.027 Score=45.09 Aligned_cols=93 Identities=13% Similarity=0.181 Sum_probs=61.8
Q ss_pred CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcc----cch---hhhccCCCCCCCEEEccC
Q 035976 62 RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFY----ENR---AYDSNGSLKQLKILNLEA 134 (203)
Q Consensus 62 ~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~----p~~---~~~~l~~l~~L~~L~L~~ 134 (203)
-.++.++|+|+ .++...+... ...+.+-.+|+..++++-. +|.. +.. ....+-++|.|+..+|+.
T Consensus 30 d~~~evdLSGN---tigtEA~e~l----~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSD 101 (388)
T COG5238 30 DELVEVDLSGN---TIGTEAMEEL----CNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSD 101 (388)
T ss_pred cceeEEeccCC---cccHHHHHHH----HHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeeccc
Confidence 45788888888 6543311111 2345566788888887643 3322 210 122456789999999999
Q ss_pred CCCCCCChh----hhcCCCCCcEEeccCCCCC
Q 035976 135 NHFNDSILP----YLNTLISLTTLILRENNIE 162 (203)
Q Consensus 135 n~l~~~~p~----~~~~l~~L~~L~L~~N~l~ 162 (203)
|.+....|+ .+..-..|.+|.+++|.+.
T Consensus 102 NAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 102 NAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred cccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 999876665 4566788999999999875
No 68
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.56 E-value=0.038 Score=46.84 Aligned_cols=50 Identities=14% Similarity=0.174 Sum_probs=32.3
Q ss_pred CCCCEEEccCC-cCCCcccchhhhccCCCCCCCEEEccCC-CCCCCChhhhcCCCCCcEEeccCCC
Q 035976 97 EELQSLDLSLN-AFEGFYENRAYDSNGSLKQLKILNLEAN-HFNDSILPYLNTLISLTTLILRENN 160 (203)
Q Consensus 97 ~~L~~L~L~~N-~l~~~~p~~~~~~l~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~N~ 160 (203)
.+|++|.++++ .++. +|. .+ .++|+.|.+++| .+. .+|. .|+.|++..+.
T Consensus 72 ~sLtsL~Lsnc~nLts-LP~----~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L~~n~ 123 (426)
T PRK15386 72 NELTEITIENCNNLTT-LPG----SI--PEGLEKLTVCHCPEIS-GLPE------SVRSLEIKGSA 123 (426)
T ss_pred CCCcEEEccCCCCccc-CCc----hh--hhhhhheEccCccccc-cccc------ccceEEeCCCC
Confidence 36999999874 4443 564 44 357999999988 554 4554 35566665554
No 69
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.52 E-value=0.013 Score=29.05 Aligned_cols=18 Identities=33% Similarity=0.645 Sum_probs=13.1
Q ss_pred CCCCCEEEccCCCCCcCC
Q 035976 186 LTNLKTLDLRDCGITTIQ 203 (203)
Q Consensus 186 l~~L~~L~L~~N~l~~ip 203 (203)
+++|+.|+|++|+|+.||
T Consensus 1 L~~L~~L~L~~N~l~~lp 18 (26)
T smart00370 1 LPNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCCEEECCCCcCCcCC
Confidence 456777888888777765
No 70
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.52 E-value=0.013 Score=29.05 Aligned_cols=18 Identities=33% Similarity=0.645 Sum_probs=13.1
Q ss_pred CCCCCEEEccCCCCCcCC
Q 035976 186 LTNLKTLDLRDCGITTIQ 203 (203)
Q Consensus 186 l~~L~~L~L~~N~l~~ip 203 (203)
+++|+.|+|++|+|+.||
T Consensus 1 L~~L~~L~L~~N~l~~lp 18 (26)
T smart00369 1 LPNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCCEEECCCCcCCcCC
Confidence 456777888888777765
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.44 E-value=0.0074 Score=28.83 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=17.2
Q ss_pred CCCEEEccCCCCCCCChhhhcC
Q 035976 126 QLKILNLEANHFNDSILPYLNT 147 (203)
Q Consensus 126 ~L~~L~L~~n~l~~~~p~~~~~ 147 (203)
+|++|++++|+++ .+|+.|..
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 5789999999999 78877654
No 72
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.08 E-value=0.00025 Score=55.10 Aligned_cols=63 Identities=13% Similarity=0.029 Sum_probs=32.3
Q ss_pred CCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCC
Q 035976 93 FHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNI 161 (203)
Q Consensus 93 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l 161 (203)
|..++.+..|+++.|.+.. .|. .+..+..+..+++..|..+ ..|.+++..+.++.+++..|.+
T Consensus 61 ~s~~t~~~rl~~sknq~~~-~~~----d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 61 FSILTRLVRLDLSKNQIKF-LPK----DAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred hHHHHHHHHHhccHhhHhh-Chh----hHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcc
Confidence 3334455555555555544 444 4444444555555555554 4555555555555555555544
No 73
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.58 E-value=0.039 Score=27.27 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=13.9
Q ss_pred CCCCcEEeccCCCCCCCcchhhh
Q 035976 148 LISLTTLILRENNIEGSRTIEGL 170 (203)
Q Consensus 148 l~~L~~L~L~~N~l~~~lp~~~~ 170 (203)
+++|+.|+|++|+++. +|...|
T Consensus 1 L~~L~~L~L~~N~l~~-lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSS-LPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCc-CCHHHc
Confidence 3466777777777776 665443
No 74
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.58 E-value=0.039 Score=27.27 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=13.9
Q ss_pred CCCCcEEeccCCCCCCCcchhhh
Q 035976 148 LISLTTLILRENNIEGSRTIEGL 170 (203)
Q Consensus 148 l~~L~~L~L~~N~l~~~lp~~~~ 170 (203)
+++|+.|+|++|+++. +|...|
T Consensus 1 L~~L~~L~L~~N~l~~-lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSS-LPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCc-CCHHHc
Confidence 3466777777777776 665443
No 75
>PRK15386 type III secretion protein GogB; Provisional
Probab=93.87 E-value=0.42 Score=40.66 Aligned_cols=30 Identities=17% Similarity=0.326 Sum_probs=19.6
Q ss_pred CCCCEEEccCC-cCCCcccchhhhccCCCCCCCEEEccCCCC
Q 035976 97 EELQSLDLSLN-AFEGFYENRAYDSNGSLKQLKILNLEANHF 137 (203)
Q Consensus 97 ~~L~~L~L~~N-~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l 137 (203)
++|++|++++| .+.. +|. .|+.|++..+..
T Consensus 94 ~nLe~L~Ls~Cs~L~s-LP~----------sLe~L~L~~n~~ 124 (426)
T PRK15386 94 EGLEKLTVCHCPEISG-LPE----------SVRSLEIKGSAT 124 (426)
T ss_pred hhhhheEccCcccccc-ccc----------ccceEEeCCCCC
Confidence 47899999988 5544 554 356666665543
No 76
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=92.63 E-value=0.1 Score=26.01 Aligned_cols=16 Identities=50% Similarity=0.628 Sum_probs=10.4
Q ss_pred CCCCEEEccCCCCCcC
Q 035976 187 TNLKTLDLRDCGITTI 202 (203)
Q Consensus 187 ~~L~~L~L~~N~l~~i 202 (203)
.+|+.|+|+.|+|+.|
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4666777777766554
No 77
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=92.45 E-value=0.087 Score=26.25 Aligned_cols=16 Identities=25% Similarity=0.513 Sum_probs=10.9
Q ss_pred CCCEEEccCCCCCcCC
Q 035976 188 NLKTLDLRDCGITTIQ 203 (203)
Q Consensus 188 ~L~~L~L~~N~l~~ip 203 (203)
+|+.|++++|+++.+|
T Consensus 3 ~L~~L~vs~N~Lt~LP 18 (26)
T smart00364 3 SLKELNVSNNQLTSLP 18 (26)
T ss_pred ccceeecCCCccccCc
Confidence 5667777777776665
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.85 E-value=0.0027 Score=49.51 Aligned_cols=86 Identities=15% Similarity=0.109 Sum_probs=67.5
Q ss_pred CCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchh
Q 035976 89 NFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIE 168 (203)
Q Consensus 89 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~ 168 (203)
+...+..+...+.||++.|++.. ... .++-++.|..|+++.|++. ..|..++....+..+++..|..+. .|.
T Consensus 34 ~v~ei~~~kr~tvld~~s~r~vn-~~~----n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~-~p~- 105 (326)
T KOG0473|consen 34 PVREIASFKRVTVLDLSSNRLVN-LGK----NFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQ-QPK- 105 (326)
T ss_pred chhhhhccceeeeehhhhhHHHh-hcc----chHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhh-CCc-
Confidence 44566777788888888888765 444 6667778888888888887 678888888888888888888877 775
Q ss_pred hhCCCCCCcEEEEe
Q 035976 169 GLSNLRNLQLLDLR 182 (203)
Q Consensus 169 ~~~~l~~L~~L~l~ 182 (203)
.+...+.++++++.
T Consensus 106 s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 106 SQKKEPHPKKNEQK 119 (326)
T ss_pred cccccCCcchhhhc
Confidence 78888888887765
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.88 E-value=0.039 Score=42.07 Aligned_cols=80 Identities=25% Similarity=0.263 Sum_probs=47.9
Q ss_pred CCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCC-CCChhhhc-CCCCCcEEeccCC-CCCCCcchhhhCCCC
Q 035976 98 ELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFN-DSILPYLN-TLISLTTLILREN-NIEGSRTIEGLSNLR 174 (203)
Q Consensus 98 ~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~-~~~p~~~~-~l~~L~~L~L~~N-~l~~~lp~~~~~~l~ 174 (203)
.++.+|-++..+.. .++..+..++.++.|.+.++.-- +..-+.++ ..++|+.|++++| +|+. -....+..++
T Consensus 102 ~IeaVDAsds~I~~----eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~-~GL~~L~~lk 176 (221)
T KOG3864|consen 102 KIEAVDASDSSIMY----EGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD-GGLACLLKLK 176 (221)
T ss_pred eEEEEecCCchHHH----HHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech-hHHHHHHHhh
Confidence 45667777766554 34447777777777777665432 11222232 3467888888876 4664 2223566777
Q ss_pred CCcEEEEe
Q 035976 175 NLQLLDLR 182 (203)
Q Consensus 175 ~L~~L~l~ 182 (203)
+|+.|.+.
T Consensus 177 nLr~L~l~ 184 (221)
T KOG3864|consen 177 NLRRLHLY 184 (221)
T ss_pred hhHHHHhc
Confidence 77777664
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=88.65 E-value=0.19 Score=24.19 Aligned_cols=14 Identities=57% Similarity=0.714 Sum_probs=7.9
Q ss_pred CCCCEEEccCCCCC
Q 035976 187 TNLKTLDLRDCGIT 200 (203)
Q Consensus 187 ~~L~~L~L~~N~l~ 200 (203)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 56677777777654
No 81
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=84.07 E-value=0.94 Score=22.77 Aligned_cols=14 Identities=29% Similarity=0.503 Sum_probs=9.6
Q ss_pred CCCCEEEccCCCCC
Q 035976 187 TNLKTLDLRDCGIT 200 (203)
Q Consensus 187 ~~L~~L~L~~N~l~ 200 (203)
++|++|+|++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45777777777764
No 82
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=80.41 E-value=1.1 Score=38.28 Aligned_cols=14 Identities=36% Similarity=0.726 Sum_probs=6.5
Q ss_pred CCCCCCCEEEccCC
Q 035976 184 ANLTNLKTLDLRDC 197 (203)
Q Consensus 184 ~~l~~L~~L~L~~N 197 (203)
..++.|++|+|+.+
T Consensus 292 ~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 292 ERCPSLRELDLSGC 305 (482)
T ss_pred HhcCcccEEeeecC
Confidence 33444555555443
No 83
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=80.29 E-value=1.9 Score=36.79 Aligned_cols=89 Identities=22% Similarity=0.101 Sum_probs=52.5
Q ss_pred CCCCCCCCEEEccCC-cCCCcccchhhhccCCCCCCCEEEccCCC-CCCCChhhhc-CCCCCcEEeccCCC-CCCC-cch
Q 035976 93 FHPFEELQSLDLSLN-AFEGFYENRAYDSNGSLKQLKILNLEANH-FNDSILPYLN-TLISLTTLILRENN-IEGS-RTI 167 (203)
Q Consensus 93 ~~~l~~L~~L~L~~N-~l~~~~p~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~~~-~l~~L~~L~L~~N~-l~~~-lp~ 167 (203)
....+.|+.|+++++ ......+.........+++|+.+++++.. ++...-..+. .+++|+.|.+.+.. ++.. +-.
T Consensus 210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~ 289 (482)
T KOG1947|consen 210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVS 289 (482)
T ss_pred HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHH
Confidence 445678888888763 21111221111133456788888888877 5544444443 37788888876665 4431 222
Q ss_pred hhhCCCCCCcEEEEe
Q 035976 168 EGLSNLRNLQLLDLR 182 (203)
Q Consensus 168 ~~~~~l~~L~~L~l~ 182 (203)
....++.|++|+++
T Consensus 290 -i~~~~~~L~~L~l~ 303 (482)
T KOG1947|consen 290 -IAERCPSLRELDLS 303 (482)
T ss_pred -HHHhcCcccEEeee
Confidence 34567888888887
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=78.86 E-value=1.3 Score=38.86 Aligned_cols=85 Identities=26% Similarity=0.194 Sum_probs=49.2
Q ss_pred CCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhc--CCCCCcEEeccCCCCCCCcchh---
Q 035976 94 HPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLN--TLISLTTLILRENNIEGSRTIE--- 168 (203)
Q Consensus 94 ~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~L~~N~l~~~lp~~--- 168 (203)
.+.+.+..+.|++|++...-.-.. --...|+|..|+|+.|...-....++. +...|+.|.+.+|.+..+....
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~ss--lsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~y 292 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSS--LSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEY 292 (585)
T ss_pred cCCcceeeeecccchhhchhhhhH--HHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHH
Confidence 356778888899998775211100 123467888999998832211223333 2345888889999887643210
Q ss_pred ---hhCCCCCCcEEE
Q 035976 169 ---GLSNLRNLQLLD 180 (203)
Q Consensus 169 ---~~~~l~~L~~L~ 180 (203)
....+|+|..||
T Consensus 293 v~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 293 VSAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHHhcchheeec
Confidence 112456666665
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=53.67 E-value=7.9 Score=34.16 Aligned_cols=81 Identities=22% Similarity=0.208 Sum_probs=48.4
Q ss_pred CCCCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCC--cCCCcccchhhhccCC--CCCCCEEEccCC
Q 035976 60 TTRRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLN--AFEGFYENRAYDSNGS--LKQLKILNLEAN 135 (203)
Q Consensus 60 ~~~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N--~l~~~~p~~~~~~l~~--l~~L~~L~L~~n 135 (203)
....|.++.|++|.-.+|.+. ...-...++|..|+|++| .+... + ++.+ ...|++|-+.+|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~---------sslsq~apklk~L~LS~N~~~~~~~-~-----el~K~k~l~Leel~l~GN 280 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDAL---------SSLSQIAPKLKTLDLSHNHSKISSE-S-----ELDKLKGLPLEELVLEGN 280 (585)
T ss_pred CCcceeeeecccchhhchhhh---------hHHHHhcchhheeecccchhhhcch-h-----hhhhhcCCCHHHeeecCC
Confidence 345688888888832223222 223345689999999999 44331 1 3322 345889999999
Q ss_pred CCCCCCh---hhh----cCCCCCcEEe
Q 035976 136 HFNDSIL---PYL----NTLISLTTLI 155 (203)
Q Consensus 136 ~l~~~~p---~~~----~~l~~L~~L~ 155 (203)
.+....- ..+ ..+|+|..||
T Consensus 281 Plc~tf~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 281 PLCTTFSDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred ccccchhhhHHHHHHHHHhcchheeec
Confidence 9864322 112 2567776665
No 86
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=41.69 E-value=20 Score=17.21 Aligned_cols=13 Identities=46% Similarity=0.820 Sum_probs=8.3
Q ss_pred CCCCCEEEccCCC
Q 035976 186 LTNLKTLDLRDCG 198 (203)
Q Consensus 186 l~~L~~L~L~~N~ 198 (203)
+++|+.|+|+++.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 3567777777664
No 87
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=40.40 E-value=23 Score=37.36 Aligned_cols=33 Identities=27% Similarity=0.317 Sum_probs=26.6
Q ss_pred EccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCC
Q 035976 103 DLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFND 139 (203)
Q Consensus 103 ~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~ 139 (203)
||++|+|+. +|.. .|..+++|+.|+|++|.+.-
T Consensus 1 DLSnN~Lst-Lp~g---~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKIST-IEEG---ICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCc-cChH---HhccCCCceEEEeeCCcccc
Confidence 588999998 4442 67788999999999998864
No 88
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.18 E-value=19 Score=27.75 Aligned_cols=70 Identities=27% Similarity=0.280 Sum_probs=45.5
Q ss_pred CCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhh-CCCCCCcEEEEe------------cCCCCCCCEE
Q 035976 126 QLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGL-SNLRNLQLLDLR------------LANLTNLKTL 192 (203)
Q Consensus 126 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~-~~l~~L~~L~l~------------~~~l~~L~~L 192 (203)
.++.+|-++..+...--+.+..++.++.|.+.+..--+.--.+-+ .-.++|+.|+++ +..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 477888888888765556777888888888877654321111112 235788888887 5666677766
Q ss_pred Ecc
Q 035976 193 DLR 195 (203)
Q Consensus 193 ~L~ 195 (203)
.|.
T Consensus 182 ~l~ 184 (221)
T KOG3864|consen 182 HLY 184 (221)
T ss_pred Hhc
Confidence 654
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=29.11 E-value=38 Score=35.91 Aligned_cols=24 Identities=29% Similarity=0.272 Sum_probs=20.9
Q ss_pred CCccCCCCCCCCEEEccCCcCCCc
Q 035976 89 NFSLFHPFEELQSLDLSLNAFEGF 112 (203)
Q Consensus 89 ~~~~~~~l~~L~~L~L~~N~l~~~ 112 (203)
+...|..+++|+.|+|++|.+.-.
T Consensus 11 p~g~F~~L~sL~~LdLsgNPw~CD 34 (2740)
T TIGR00864 11 EEGICANLCNLSEIDLSGNPFECD 34 (2740)
T ss_pred ChHHhccCCCceEEEeeCCccccc
Confidence 577889999999999999998763
Done!