Query 035976
Match_columns 203
No_of_seqs 259 out of 2984
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 13:42:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035976.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035976hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 99.9 1.1E-26 3.6E-31 188.1 11.2 152 5-182 1-157 (313)
2 3rgz_A Protein brassinosteroid 99.9 3.6E-23 1.2E-27 185.4 13.2 175 6-201 8-214 (768)
3 4eco_A Uncharacterized protein 99.9 8E-23 2.7E-27 179.7 9.9 177 7-200 27-343 (636)
4 4fcg_A Uncharacterized protein 99.9 2.7E-22 9.1E-27 163.3 7.4 137 6-166 23-167 (328)
5 4ecn_A Leucine-rich repeat pro 99.9 1.1E-21 3.6E-26 177.5 11.7 79 6-108 265-359 (876)
6 2o6q_A Variable lymphocyte rec 99.8 5.3E-19 1.8E-23 139.7 14.2 106 93-203 81-197 (270)
7 3e6j_A Variable lymphocyte rec 99.8 9.8E-19 3.4E-23 135.3 14.8 138 46-201 16-173 (229)
8 3m19_A Variable lymphocyte rec 99.8 3.5E-19 1.2E-23 139.4 12.1 108 90-202 52-170 (251)
9 2o6s_A Variable lymphocyte rec 99.8 5.9E-18 2E-22 128.6 14.6 137 48-201 6-162 (208)
10 2v9t_B SLIT homolog 2 protein 99.8 6.5E-18 2.2E-22 129.9 13.1 135 49-200 11-165 (220)
11 2v70_A SLIT-2, SLIT homolog 2 99.8 1.2E-17 4.2E-22 128.4 12.6 137 49-201 11-167 (220)
12 4g8a_A TOLL-like receptor 4; l 99.7 1.4E-17 4.8E-22 144.8 12.5 125 63-203 53-189 (635)
13 3m19_A Variable lymphocyte rec 99.7 2.8E-16 9.7E-21 122.7 14.8 108 89-201 75-193 (251)
14 2xot_A Amphoterin-induced prot 99.7 8.7E-17 3E-21 132.2 12.1 138 49-203 18-179 (361)
15 2o6q_A Variable lymphocyte rec 99.7 4.9E-16 1.7E-20 122.6 15.0 109 90-203 54-173 (270)
16 4b8c_D Glucose-repressible alc 99.7 1.6E-17 5.6E-22 148.0 7.0 176 8-202 130-331 (727)
17 1ozn_A Reticulon 4 receptor; N 99.7 5.6E-16 1.9E-20 123.0 14.9 108 90-202 73-192 (285)
18 2z80_A TOLL-like receptor 2, v 99.7 1.1E-16 3.9E-21 130.8 10.8 139 46-202 27-189 (353)
19 3rfs_A Internalin B, repeat mo 99.7 7.8E-16 2.7E-20 121.7 15.1 107 90-201 102-219 (272)
20 3rfs_A Internalin B, repeat mo 99.7 1.3E-15 4.4E-20 120.4 16.0 125 61-203 62-197 (272)
21 3oja_B Anopheles plasmodium-re 99.7 8.7E-17 3E-21 140.3 9.8 108 90-202 68-186 (597)
22 3zyi_A Leucine-rich repeat-con 99.7 5.6E-16 1.9E-20 130.8 14.3 136 52-203 56-212 (452)
23 2v9t_B SLIT homolog 2 protein 99.7 6.9E-16 2.4E-20 118.5 13.2 102 97-203 32-144 (220)
24 3o6n_A APL1; leucine-rich repe 99.7 1.1E-16 3.7E-21 132.5 8.9 106 91-201 63-179 (390)
25 2z81_A CD282 antigen, TOLL-lik 99.7 3.2E-16 1.1E-20 134.7 12.2 136 48-201 3-162 (549)
26 2ell_A Acidic leucine-rich nuc 99.7 3E-16 1E-20 115.3 10.3 125 62-203 24-163 (168)
27 1ozn_A Reticulon 4 receptor; N 99.7 1.2E-15 4E-20 121.2 14.3 110 89-203 97-217 (285)
28 1p9a_G Platelet glycoprotein I 99.7 9.6E-16 3.3E-20 122.5 13.6 104 94-203 74-188 (290)
29 3zyj_A Leucine-rich repeat-con 99.7 9.8E-16 3.3E-20 128.9 14.2 136 52-203 45-201 (440)
30 3vq2_A TLR4, TOLL-like recepto 99.7 8.4E-16 2.9E-20 133.7 14.0 125 62-202 32-168 (606)
31 3e6j_A Variable lymphocyte rec 99.7 1.7E-15 5.9E-20 116.9 13.6 128 52-203 14-151 (229)
32 2id5_A Lingo-1, leucine rich r 99.7 1.4E-15 4.8E-20 128.9 14.0 125 63-203 33-168 (477)
33 1w8a_A SLIT protein; signaling 99.7 1.1E-15 3.9E-20 114.9 12.1 100 98-201 30-140 (192)
34 2z62_A TOLL-like receptor 4, v 99.7 7.4E-16 2.5E-20 121.8 11.5 124 63-202 29-164 (276)
35 3v47_A TOLL-like receptor 5B a 99.6 6.5E-16 2.2E-20 129.9 11.1 127 62-202 30-169 (455)
36 1xku_A Decorin; proteoglycan, 99.6 5.2E-15 1.8E-19 119.8 13.2 136 48-203 30-187 (330)
37 2wfh_A SLIT homolog 2 protein 99.6 6.6E-15 2.3E-19 110.9 12.6 97 98-200 32-139 (193)
38 1ogq_A PGIP-2, polygalacturona 99.6 4.3E-16 1.5E-20 125.7 6.4 69 91-163 119-188 (313)
39 1ziw_A TOLL-like receptor 3; i 99.6 3.2E-15 1.1E-19 131.8 12.5 125 62-202 25-160 (680)
40 2o6r_A Variable lymphocyte rec 99.6 1.3E-14 4.6E-19 107.3 13.9 94 90-201 45-138 (177)
41 3v47_A TOLL-like receptor 5B a 99.6 4E-15 1.4E-19 125.1 12.4 108 89-201 291-409 (455)
42 4ezg_A Putative uncharacterize 99.6 2.2E-15 7.4E-20 113.6 9.6 105 91-202 82-196 (197)
43 2o6s_A Variable lymphocyte rec 99.6 1.8E-15 6.1E-20 114.8 9.1 124 62-201 52-179 (208)
44 1p9a_G Platelet glycoprotein I 99.6 1.3E-14 4.3E-19 115.9 14.5 106 90-200 93-208 (290)
45 2v70_A SLIT-2, SLIT homolog 2 99.6 8.2E-15 2.8E-19 112.5 12.8 119 66-202 15-144 (220)
46 2o6r_A Variable lymphocyte rec 99.6 7.3E-15 2.5E-19 108.8 12.1 66 97-167 28-93 (177)
47 4ezg_A Putative uncharacterize 99.6 2.8E-15 9.6E-20 113.0 9.8 121 63-203 45-175 (197)
48 3t6q_A CD180 antigen; protein- 99.6 8.2E-15 2.8E-19 127.4 13.7 124 63-202 34-168 (606)
49 3j0a_A TOLL-like receptor 5; m 99.6 6.2E-15 2.1E-19 133.3 13.0 135 51-202 15-163 (844)
50 2ft3_A Biglycan; proteoglycan, 99.6 7.5E-15 2.6E-19 119.0 12.2 134 49-203 33-188 (332)
51 2z63_A TOLL-like receptor 4, v 99.6 9E-15 3.1E-19 126.1 12.8 125 62-202 28-164 (570)
52 3rgz_A Protein brassinosteroid 99.6 7.2E-15 2.5E-19 131.7 11.8 107 89-200 434-551 (768)
53 2z66_A Variable lymphocyte rec 99.6 6.1E-15 2.1E-19 118.1 10.0 62 120-182 170-231 (306)
54 1w8a_A SLIT protein; signaling 99.6 5.5E-15 1.9E-19 111.1 9.1 118 49-182 8-134 (192)
55 2je0_A Acidic leucine-rich nuc 99.6 6.7E-15 2.3E-19 105.9 9.1 116 62-195 17-148 (149)
56 2xwt_C Thyrotropin receptor; s 99.6 6.3E-15 2.2E-19 114.1 9.5 106 90-202 48-171 (239)
57 4g8a_A TOLL-like receptor 4; l 99.6 1.4E-14 4.9E-19 125.8 12.2 101 97-202 52-163 (635)
58 2z66_A Variable lymphocyte rec 99.6 1.3E-14 4.3E-19 116.2 11.0 123 73-202 104-238 (306)
59 2wfh_A SLIT homolog 2 protein 99.6 1.6E-14 5.5E-19 108.7 10.9 116 49-182 10-134 (193)
60 2id5_A Lingo-1, leucine rich r 99.6 1.7E-14 5.7E-19 122.3 12.0 107 90-201 73-190 (477)
61 3o6n_A APL1; leucine-rich repe 99.6 2.8E-14 9.6E-19 118.0 12.7 121 73-201 72-200 (390)
62 2xot_A Amphoterin-induced prot 99.6 3.3E-14 1.1E-18 116.8 12.4 102 97-203 39-152 (361)
63 3zyi_A Leucine-rich repeat-con 99.6 2.9E-14 9.8E-19 120.3 12.4 89 90-182 116-204 (452)
64 3zyj_A Leucine-rich repeat-con 99.6 2.4E-14 8.2E-19 120.4 11.9 106 90-202 105-246 (440)
65 2z62_A TOLL-like receptor 4, v 99.6 1.7E-14 5.9E-19 113.9 10.2 107 92-203 95-216 (276)
66 3oja_B Anopheles plasmodium-re 99.6 3E-14 1E-18 124.2 12.5 121 73-201 78-206 (597)
67 2je0_A Acidic leucine-rich nuc 99.6 1.5E-14 5.2E-19 104.0 8.8 101 96-203 16-129 (149)
68 3vq2_A TLR4, TOLL-like recepto 99.5 1.2E-14 4E-19 126.5 9.5 108 91-203 418-537 (606)
69 4fcg_A Uncharacterized protein 99.5 1.7E-14 5.6E-19 117.2 9.7 99 94-199 180-289 (328)
70 1wwl_A Monocyte differentiatio 99.5 9.1E-15 3.1E-19 117.7 8.0 83 94-182 118-209 (312)
71 1wwl_A Monocyte differentiatio 99.5 7E-15 2.4E-19 118.4 7.3 110 90-203 166-290 (312)
72 1h6t_A Internalin B; cell adhe 99.5 1.2E-13 4.1E-18 110.3 13.6 117 62-202 68-193 (291)
73 1h6u_A Internalin H; cell adhe 99.5 1.5E-13 5.1E-18 110.5 14.2 99 93-202 103-210 (308)
74 1h6u_A Internalin H; cell adhe 99.5 2.1E-13 7E-18 109.7 14.5 99 93-202 81-188 (308)
75 2z7x_B TOLL-like receptor 1, v 99.5 1.1E-13 3.9E-18 118.2 13.3 70 90-163 341-413 (520)
76 2ell_A Acidic leucine-rich nuc 99.5 3.3E-14 1.1E-18 104.3 8.6 102 95-203 22-136 (168)
77 2z80_A TOLL-like receptor 2, v 99.5 3E-14 1E-18 116.4 9.1 108 89-202 92-213 (353)
78 1xku_A Decorin; proteoglycan, 99.5 1.1E-13 3.8E-18 111.9 12.1 106 90-203 164-279 (330)
79 3g39_A Variable lymphocyte rec 99.5 1.4E-13 4.7E-18 101.5 11.4 98 65-181 12-109 (170)
80 2r9u_A Variable lymphocyte rec 99.5 1.7E-13 5.8E-18 101.5 11.4 99 65-182 15-113 (174)
81 3t6q_A CD180 antigen; protein- 99.5 1E-13 3.6E-18 120.5 11.4 110 89-203 73-195 (606)
82 4eco_A Uncharacterized protein 99.5 1.3E-14 4.6E-19 127.4 5.6 88 90-182 240-338 (636)
83 4ay9_X Follicle-stimulating ho 99.5 5.3E-14 1.8E-18 115.0 8.8 106 49-163 9-118 (350)
84 4ecn_A Leucine-rich repeat pro 99.5 2.9E-14 9.9E-19 129.1 7.7 109 90-203 482-611 (876)
85 1ziw_A TOLL-like receptor 3; i 99.5 1.2E-13 4E-18 121.8 11.1 126 62-203 49-187 (680)
86 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 3.5E-13 1.2E-17 116.5 13.7 124 62-203 353-489 (562)
87 2z81_A CD282 antigen, TOLL-lik 99.5 7.6E-14 2.6E-18 119.9 9.4 126 62-202 50-211 (549)
88 2xwt_C Thyrotropin receptor; s 99.5 6.3E-14 2.2E-18 108.4 7.9 104 92-203 100-221 (239)
89 1a9n_A U2A', U2A'; complex (nu 99.5 6.1E-14 2.1E-18 103.8 7.5 118 63-200 20-153 (176)
90 1h6t_A Internalin B; cell adhe 99.5 4.4E-13 1.5E-17 107.0 13.0 101 92-203 107-216 (291)
91 1xeu_A Internalin C; cellular 99.5 2E-13 6.9E-18 107.5 10.9 117 62-203 63-188 (263)
92 3oja_A Leucine-rich immune mol 99.5 1E-13 3.5E-18 118.2 9.9 103 90-200 137-250 (487)
93 3j0a_A TOLL-like receptor 5; m 99.5 3.6E-13 1.2E-17 121.8 13.8 125 63-203 267-397 (844)
94 2z7x_B TOLL-like receptor 1, v 99.5 1.1E-13 3.6E-18 118.4 9.7 119 62-199 21-150 (520)
95 2ft3_A Biglycan; proteoglycan, 99.5 2E-13 6.7E-18 110.6 10.8 77 125-202 193-279 (332)
96 1xeu_A Internalin C; cellular 99.5 4.2E-13 1.5E-17 105.6 12.3 116 62-202 41-165 (263)
97 3g39_A Variable lymphocyte rec 99.5 4.5E-13 1.5E-17 98.8 11.5 105 49-163 9-116 (170)
98 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 1.9E-13 6.5E-18 118.2 11.0 119 62-199 52-181 (562)
99 4glp_A Monocyte differentiatio 99.5 1.1E-13 3.9E-18 111.1 8.4 111 89-203 161-288 (310)
100 4glp_A Monocyte differentiatio 99.5 5.5E-14 1.9E-18 113.0 6.5 103 96-203 144-267 (310)
101 2z63_A TOLL-like receptor 4, v 99.5 1.9E-13 6.3E-18 117.8 10.2 126 62-203 52-193 (570)
102 1m9s_A Internalin B; cell inva 99.5 7.6E-13 2.6E-17 115.7 14.1 100 92-202 104-212 (605)
103 3oja_A Leucine-rich immune mol 99.5 9.2E-14 3.2E-18 118.5 7.9 102 95-203 118-230 (487)
104 2r9u_A Variable lymphocyte rec 99.5 8.4E-13 2.9E-17 97.7 11.6 71 89-163 49-119 (174)
105 1m9s_A Internalin B; cell inva 99.5 9.4E-13 3.2E-17 115.1 13.7 119 61-203 64-191 (605)
106 1a9n_A U2A', U2A'; complex (nu 99.4 1.4E-13 4.9E-18 101.7 7.2 104 91-203 13-129 (176)
107 3o53_A Protein LRIM1, AGAP0063 99.4 3.3E-13 1.1E-17 108.8 9.0 103 90-200 137-250 (317)
108 4fmz_A Internalin; leucine ric 99.4 1.4E-12 4.9E-17 105.8 12.4 99 93-200 239-346 (347)
109 3o53_A Protein LRIM1, AGAP0063 99.4 2.6E-13 9E-18 109.4 7.8 102 95-203 118-230 (317)
110 1dce_A Protein (RAB geranylger 99.4 5.9E-13 2E-17 115.6 10.2 82 93-182 459-541 (567)
111 1o6v_A Internalin A; bacterial 99.4 3.6E-12 1.2E-16 107.8 13.3 100 93-203 283-391 (466)
112 1dce_A Protein (RAB geranylger 99.4 1.2E-12 4.2E-17 113.6 10.2 96 98-203 442-549 (567)
113 3bz5_A Internalin-J, INLJ; leu 99.4 5.6E-12 1.9E-16 106.7 14.0 97 93-203 81-186 (457)
114 2ifg_A High affinity nerve gro 99.4 1.9E-12 6.5E-17 105.3 10.5 86 90-182 25-111 (347)
115 4fmz_A Internalin; leucine ric 99.4 8.9E-12 3E-16 101.1 13.6 118 62-202 66-192 (347)
116 1o6v_A Internalin A; bacterial 99.4 6.1E-12 2.1E-16 106.4 12.8 117 62-202 68-192 (466)
117 3bz5_A Internalin-J, INLJ; leu 99.3 2E-11 6.7E-16 103.4 14.1 97 93-202 123-227 (457)
118 3cvr_A Invasion plasmid antige 99.3 5.6E-12 1.9E-16 109.5 10.3 137 34-203 32-196 (571)
119 4b8c_D Glucose-repressible alc 99.3 3.1E-12 1.1E-16 114.1 8.5 85 90-182 240-324 (727)
120 1ds9_A Outer arm dynein; leuci 99.3 1.5E-14 5.2E-19 109.0 -6.4 83 92-182 65-148 (198)
121 1jl5_A Outer protein YOPM; leu 99.3 2.8E-11 9.4E-16 102.4 12.9 62 92-163 148-209 (454)
122 3g06_A SSPH2 (leucine-rich rep 99.2 4.4E-12 1.5E-16 111.1 5.3 70 96-182 80-149 (622)
123 2ast_B S-phase kinase-associat 99.2 5E-12 1.7E-16 102.1 5.1 85 93-182 89-176 (336)
124 2ast_B S-phase kinase-associat 99.2 9.6E-13 3.3E-17 106.3 0.1 132 47-201 35-183 (336)
125 3cvr_A Invasion plasmid antige 99.2 1.2E-10 4.2E-15 101.0 12.9 117 63-203 81-223 (571)
126 2ifg_A High affinity nerve gro 99.2 5.1E-11 1.8E-15 96.8 9.6 94 100-201 11-117 (347)
127 1jl5_A Outer protein YOPM; leu 99.2 1.4E-10 4.9E-15 98.0 12.5 94 97-203 131-231 (454)
128 3goz_A Leucine-rich repeat-con 99.2 3.9E-12 1.3E-16 104.3 2.6 104 97-201 80-210 (362)
129 2ca6_A RAN GTPase-activating p 99.2 7.3E-12 2.5E-16 103.4 2.1 106 92-202 182-318 (386)
130 2ca6_A RAN GTPase-activating p 99.1 1.7E-11 5.7E-16 101.2 2.5 103 94-200 91-229 (386)
131 1ds9_A Outer arm dynein; leuci 99.1 1.5E-12 5.2E-17 98.0 -4.0 100 92-201 43-154 (198)
132 3goz_A Leucine-rich repeat-con 99.1 2.9E-11 9.8E-16 99.1 3.1 129 62-202 22-182 (362)
133 3g06_A SSPH2 (leucine-rich rep 99.1 1.3E-09 4.3E-14 95.6 12.8 68 125-201 221-298 (622)
134 4ay9_X Follicle-stimulating ho 99.1 4.5E-10 1.5E-14 91.6 8.4 102 97-203 30-145 (350)
135 3sb4_A Hypothetical leucine ri 98.9 8.3E-09 2.8E-13 83.3 11.2 78 124-203 225-313 (329)
136 1z7x_W Ribonuclease inhibitor; 98.9 6.5E-11 2.2E-15 99.4 -1.5 75 125-200 313-411 (461)
137 1z7x_W Ribonuclease inhibitor; 98.9 2.2E-10 7.6E-15 96.1 1.0 102 94-200 253-383 (461)
138 3un9_A NLR family member X1; l 98.8 2.5E-10 8.7E-15 94.1 -0.5 129 62-201 101-253 (372)
139 3un9_A NLR family member X1; l 98.7 1.3E-09 4.5E-14 89.9 -1.7 129 62-201 72-225 (372)
140 3rw6_A Nuclear RNA export fact 98.6 2.5E-08 8.4E-13 78.5 5.0 80 95-180 168-257 (267)
141 1io0_A Tropomodulin; LRR prote 98.6 1.8E-08 6.2E-13 74.9 3.1 107 93-200 32-164 (185)
142 3sb4_A Hypothetical leucine ri 98.6 2.2E-07 7.6E-12 74.9 8.5 84 90-180 243-327 (329)
143 3rw6_A Nuclear RNA export fact 98.5 3.8E-09 1.3E-13 83.2 -2.2 58 122-182 167-228 (267)
144 3ogk_B Coronatine-insensitive 98.5 1.4E-08 4.7E-13 87.8 0.2 81 95-181 162-250 (592)
145 3ogk_B Coronatine-insensitive 98.3 5.4E-07 1.8E-11 77.8 6.3 73 122-195 267-350 (592)
146 4fdw_A Leucine rich hypothetic 98.2 9.7E-06 3.3E-10 67.3 9.6 80 120-202 266-360 (401)
147 2p1m_B Transport inhibitor res 98.1 6E-07 2.1E-11 77.4 1.2 76 123-199 430-518 (594)
148 4fdw_A Leucine rich hypothetic 98.0 2.6E-05 8.7E-10 64.8 10.0 102 88-198 171-282 (401)
149 3e4g_A ATP synthase subunit S, 98.0 6.4E-06 2.2E-10 60.6 4.5 63 93-159 81-149 (176)
150 2p1m_B Transport inhibitor res 98.0 1.3E-06 4.5E-11 75.3 0.7 65 95-163 103-170 (594)
151 3e4g_A ATP synthase subunit S, 97.8 2.2E-05 7.6E-10 57.7 4.3 81 97-182 61-147 (176)
152 1io0_A Tropomodulin; LRR prote 97.7 2.4E-05 8.3E-10 57.8 4.0 81 120-201 31-137 (185)
153 2ra8_A Uncharacterized protein 97.7 3.8E-05 1.3E-09 62.9 5.3 52 148-200 251-320 (362)
154 2ra8_A Uncharacterized protein 97.6 1.4E-05 4.6E-10 65.6 1.5 102 92-201 167-293 (362)
155 4gt6_A Cell surface protein; l 97.5 0.00064 2.2E-08 55.8 9.5 59 121-182 307-365 (394)
156 4gt6_A Cell surface protein; l 97.4 0.00089 3E-08 55.0 9.7 102 89-198 257-368 (394)
157 4h09_A Hypothetical leucine ri 97.4 0.00059 2E-08 55.6 8.2 99 91-196 234-342 (379)
158 3rfe_A Platelet glycoprotein I 97.4 0.00049 1.7E-08 47.9 6.6 37 98-138 32-68 (130)
159 4fs7_A Uncharacterized protein 97.3 0.00076 2.6E-08 55.4 8.0 60 120-182 315-374 (394)
160 1pgv_A TMD-1, tropomodulin TMD 97.2 0.00022 7.5E-09 53.3 3.6 67 93-159 66-136 (197)
161 4fs7_A Uncharacterized protein 96.8 0.0043 1.5E-07 50.9 7.9 75 120-197 292-376 (394)
162 4h09_A Hypothetical leucine ri 96.3 0.0097 3.3E-07 48.3 7.3 87 89-182 255-341 (379)
163 3rfe_A Platelet glycoprotein I 96.2 0.013 4.5E-07 40.5 6.3 56 100-162 11-68 (130)
164 1pgv_A TMD-1, tropomodulin TMD 95.2 0.023 7.8E-07 42.3 4.6 106 93-199 37-169 (197)
165 2lz0_A Uncharacterized protein 52.9 15 0.00052 23.5 3.6 45 136-182 7-51 (100)
166 2lz0_A Uncharacterized protein 41.7 44 0.0015 21.3 4.5 42 88-134 11-52 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=1.1e-26 Score=188.06 Aligned_cols=152 Identities=26% Similarity=0.362 Sum_probs=92.4
Q ss_pred ccCChHHHHHHHHHHhhccccCCccccccccCCCCCCCCCCCCCCCC--CCccccCCCC--CCeeEEecCCccccccccC
Q 035976 5 KCCLQKERIGLLALKSFFISISDTEYAEEILTSWVDDDGMSSDCSND--WDGVKCNATT--RRVMHLLLNDTAKFNFSYN 80 (203)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~c~~--w~gv~c~~~~--~~v~~l~l~~~~~l~l~~~ 80 (203)
+.|.+.|++||++||+++. ||. .+.+|.. + .+|| . |.||.|+... ++|+.++++++ .+.+.
T Consensus 1 ~~c~~~~~~aL~~~k~~~~-----~~~--~l~~W~~--~--~~~C-~~~w~gv~C~~~~~~~~l~~L~L~~~---~l~~~ 65 (313)
T 1ogq_A 1 ELCNPQDKQALLQIKKDLG-----NPT--TLSSWLP--T--TDCC-NRTWLGVLCDTDTQTYRVNNLDLSGL---NLPKP 65 (313)
T ss_dssp CCSCHHHHHHHHHHHHHTT-----CCG--GGTTCCT--T--SCTT-TTCSTTEEECCSSSCCCEEEEEEECC---CCSSC
T ss_pred CCCCHHHHHHHHHHHHhcC-----Ccc--cccCCCC--C--CCCC-cCCCcceEeCCCCCCceEEEEECCCC---CccCC
Confidence 4699999999999999997 665 6899976 3 5899 7 9999998644 78999999988 65541
Q ss_pred ccccccccCCccCCCCCCCCEEEccC-CcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCC
Q 035976 81 SLFGVSLMNFSLFHPFEELQSLDLSL-NAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILREN 159 (203)
Q Consensus 81 ~l~~~~~~~~~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N 159 (203)
. ..+..+..+++|++|++++ |.+.+.+|. .+..+++|++|++++|.+++.+|..+..+++|++|++++|
T Consensus 66 -----~-~~~~~l~~l~~L~~L~L~~~n~l~~~~p~----~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N 135 (313)
T 1ogq_A 66 -----Y-PIPSSLANLPYLNFLYIGGINNLVGPIPP----AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN 135 (313)
T ss_dssp -----E-ECCGGGGGCTTCSEEEEEEETTEESCCCG----GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSS
T ss_pred -----c-ccChhHhCCCCCCeeeCCCCCcccccCCh----hHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCC
Confidence 0 0133444455555555552 444444444 4444455555555555544444444444445555555555
Q ss_pred CCCCCcchhhhCCCCCCcEEEEe
Q 035976 160 NIEGSRTIEGLSNLRNLQLLDLR 182 (203)
Q Consensus 160 ~l~~~lp~~~~~~l~~L~~L~l~ 182 (203)
.+++.+|. .+..+++|++|+++
T Consensus 136 ~l~~~~p~-~~~~l~~L~~L~L~ 157 (313)
T 1ogq_A 136 ALSGTLPP-SISSLPNLVGITFD 157 (313)
T ss_dssp EEESCCCG-GGGGCTTCCEEECC
T ss_pred ccCCcCCh-HHhcCCCCCeEECc
Confidence 44443442 44444444444444
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=3.6e-23 Score=185.40 Aligned_cols=175 Identities=27% Similarity=0.329 Sum_probs=127.1
Q ss_pred cCChHHHHHHHHHHhhccccCCccccccccCCCCCCCCCCCCCCCCCCccccCCCCCCeeEEecCCcccccccc------
Q 035976 6 CCLQKERIGLLALKSFFISISDTEYAEEILTSWVDDDGMSSDCSNDWDGVKCNATTRRVMHLLLNDTAKFNFSY------ 79 (203)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~c~~w~gv~c~~~~~~v~~l~l~~~~~l~l~~------ 79 (203)
.+.++|++||++||+++. ||. .+.+|.. + ++|| .|.||+|+ .++|+.++|++. .+.+
T Consensus 8 ~~~~~~~~all~~k~~~~-----~~~--~l~~W~~--~--~~~C-~w~gv~C~--~~~v~~L~L~~~---~l~g~~~~l~ 70 (768)
T 3rgz_A 8 QSLYREIHQLISFKDVLP-----DKN--LLPDWSS--N--KNPC-TFDGVTCR--DDKVTSIDLSSK---PLNVGFSAVS 70 (768)
T ss_dssp CCHHHHHHHHHHHHTTCS-----CTT--SSTTCCT--T--SCGG-GSTTEEEE--TTEEEEEECTTS---CCCEEHHHHH
T ss_pred cCCHHHHHHHHHHHhhCC-----Ccc--cccCCCC--C--CCCc-CCcceEEC--CCcEEEEECCCC---CcCCccCccC
Confidence 356789999999999997 776 6899985 3 6899 99999997 589999999987 4433
Q ss_pred -------------CccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhh-
Q 035976 80 -------------NSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYL- 145 (203)
Q Consensus 80 -------------~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~- 145 (203)
+.+.+... .+..++.+++|++|+|++|.+++.+|.. ..+..+++|++|++++|.+++..|..+
T Consensus 71 ~~l~~L~~L~~l~~~~~~~~~-l~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 147 (768)
T 3rgz_A 71 SSLLSLTGLESLFLSNSHING-SVSGFKCSASLTSLDLSRNSLSGPVTTL--TSLGSCSGLKFLNVSSNTLDFPGKVSGG 147 (768)
T ss_dssp HHTTTCTTCCEEECTTSCEEE-CCCCCCCCTTCCEEECCSSEEEEEGGGG--GGGGGCTTCCEEECCSSEEECCSSCCSC
T ss_pred hhHhccCcccccCCcCCCcCC-CchhhccCCCCCEEECCCCcCCCcCCCh--HHHhCCCCCCEEECcCCccCCcCCHHHh
Confidence 22222221 2357888999999999999988766531 146778888888888888877777655
Q ss_pred cCCCCCcEEeccCCCCCCCcchhh---hCCCCCCcEEEEe---------cCCCCCCCEEEccCCCCCc
Q 035976 146 NTLISLTTLILRENNIEGSRTIEG---LSNLRNLQLLDLR---------LANLTNLKTLDLRDCGITT 201 (203)
Q Consensus 146 ~~l~~L~~L~L~~N~l~~~lp~~~---~~~l~~L~~L~l~---------~~~l~~L~~L~L~~N~l~~ 201 (203)
..+++|++|++++|++++..|. . +..+++|++|+++ +..+++|++|+|++|++++
T Consensus 148 ~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~ 214 (768)
T 3rgz_A 148 LKLNSLEVLDLSANSISGANVV-GWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFST 214 (768)
T ss_dssp CCCTTCSEEECCSSCCEEETHH-HHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCS
T ss_pred ccCCCCCEEECCCCccCCcCCh-hhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCC
Confidence 6778888888888888774432 3 5666677777665 3455556666666665544
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.88 E-value=8e-23 Score=179.73 Aligned_cols=177 Identities=16% Similarity=0.189 Sum_probs=118.3
Q ss_pred CChHHHHHHHHHHhhccccCCccccccc-------cCCCCCCCCCCCCCCCCC---CccccCCCCCCeeEEecCCc----
Q 035976 7 CLQKERIGLLALKSFFISISDTEYAEEI-------LTSWVDDDGMSSDCSNDW---DGVKCNATTRRVMHLLLNDT---- 72 (203)
Q Consensus 7 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~-------~~~W~~~~~~~~~~c~~w---~gv~c~~~~~~v~~l~l~~~---- 72 (203)
...+|++||.++|.++. ++.+.. ..+|.. + .+|| .| .||.|+. .++|+.|+|+++
T Consensus 27 ~~~~d~~aL~~~~~~~~-----~~~w~~~~~~~~~~~~W~~--~--~~~c-~w~~~~GV~C~~-~~~V~~L~L~~~~l~g 95 (636)
T 4eco_A 27 EYIKDYLALKEIWDALN-----GKNWSQQGFGTQPGANWNF--N--KELD-MWGAQPGVSLNS-NGRVTGLSLEGFGASG 95 (636)
T ss_dssp HHHHHHHHHHHHHHHTT-----GGGCCCCC------CCCCC--S--SCGG-GTTCCTTEEECT-TCCEEEEECTTSCCEE
T ss_pred hHHHHHHHHHHHHHHcC-----CCCcccCCcCCccCCCCCC--C--CCcc-cccCCCCeEEcC-CCCEEEEEecCcccCC
Confidence 34579999999999987 444322 347986 3 6899 99 9999986 489999999988
Q ss_pred ------------cccccccCcc------cc--------------------------------------------------
Q 035976 73 ------------AKFNFSYNSL------FG-------------------------------------------------- 84 (203)
Q Consensus 73 ------------~~l~l~~~~l------~~-------------------------------------------------- 84 (203)
+.|++++|.+ .+
T Consensus 96 ~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~ 175 (636)
T 4eco_A 96 RVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSI 175 (636)
T ss_dssp EECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCC
T ss_pred cCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccc
Confidence 2233333322 11
Q ss_pred -------------------ccccCCccCCCCCCCCEEEccCCcCCCc-----------------ccchhhhccC--CCCC
Q 035976 85 -------------------VSLMNFSLFHPFEELQSLDLSLNAFEGF-----------------YENRAYDSNG--SLKQ 126 (203)
Q Consensus 85 -------------------~~~~~~~~~~~l~~L~~L~L~~N~l~~~-----------------~p~~~~~~l~--~l~~ 126 (203)
... .|..++++++|++|+|++|.+++. +|. .+. .+++
T Consensus 176 ~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~----~l~~~~l~~ 250 (636)
T 4eco_A 176 KKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE----DLKWDNLKD 250 (636)
T ss_dssp CCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS----CCCGGGCTT
T ss_pred ccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCch----hhhhcccCC
Confidence 000 134566677777777777777764 565 666 6777
Q ss_pred CCEEEccCCCCCCCChhhhcCCCCCcEEeccCCC-CCC-CcchhhhCCC------CCCcEEEEe------------cCCC
Q 035976 127 LKILNLEANHFNDSILPYLNTLISLTTLILRENN-IEG-SRTIEGLSNL------RNLQLLDLR------------LANL 186 (203)
Q Consensus 127 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~-l~~-~lp~~~~~~l------~~L~~L~l~------------~~~l 186 (203)
|++|++++|.+.+.+|..+..+++|+.|++++|+ +++ .+|. .+..+ ++|++|+++ ++.+
T Consensus 251 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~-~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l 329 (636)
T 4eco_A 251 LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKD-DWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKM 329 (636)
T ss_dssp CCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHH-HHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTC
T ss_pred CCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchH-HHHhhhccccCCCCCEEECCCCcCCccCchhhhccC
Confidence 7777777777777777777777777777777776 665 5664 55554 677777776 3455
Q ss_pred CCCCEEEccCCCCC
Q 035976 187 TNLKTLDLRDCGIT 200 (203)
Q Consensus 187 ~~L~~L~L~~N~l~ 200 (203)
++|+.|++++|+++
T Consensus 330 ~~L~~L~L~~N~l~ 343 (636)
T 4eco_A 330 KKLGMLECLYNQLE 343 (636)
T ss_dssp TTCCEEECCSCCCE
T ss_pred CCCCEEeCcCCcCc
Confidence 56777777777776
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=2.7e-22 Score=163.27 Aligned_cols=137 Identities=13% Similarity=0.123 Sum_probs=77.5
Q ss_pred cCChHHHHHHHHHHhhccccCCccccccccCCCCCCCCCCCCCCCCCCccccCC--------CCCCeeEEecCCcccccc
Q 035976 6 CCLQKERIGLLALKSFFISISDTEYAEEILTSWVDDDGMSSDCSNDWDGVKCNA--------TTRRVMHLLLNDTAKFNF 77 (203)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~c~~w~gv~c~~--------~~~~v~~l~l~~~~~l~l 77 (203)
++...|++||++||+++.. |+. .....|........++| .|.|+.|.. ...+|+.|+++++ .+
T Consensus 23 ~~~~~~~~aLl~~k~~~~~----~~~-~~~~~w~~~~~~~~~~~-~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n---~l 93 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNA----DRN-RWHSAWRQANSNNPQIE-TRTGRALKATADLLEDATQPGRVALELRSV---PL 93 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHH----CCT-THHHHHHHHTTTCTTSC-CSHHHHHHHHHHHHHHHTSTTCCEEEEESS---CC
T ss_pred ccCchHHHHHHHHHHhccC----Cch-hhhhhhccccccccccc-ccCCcchhhhHHHHhcccccceeEEEccCC---Cc
Confidence 3566799999999999853 564 46778951100115789 999999942 3467889988887 44
Q ss_pred ccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEecc
Q 035976 78 SYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILR 157 (203)
Q Consensus 78 ~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 157 (203)
... +..+..+++|++|++++|.++ .+|. .+..+++|++|++++|.++ .+|..+..+++|+.|+++
T Consensus 94 ~~l---------p~~l~~l~~L~~L~L~~n~l~-~lp~----~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 94 PQF---------PDQAFRLSHLQHMTIDAAGLM-ELPD----TMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158 (328)
T ss_dssp SSC---------CSCGGGGTTCSEEEEESSCCC-CCCS----CGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred hhc---------ChhhhhCCCCCEEECCCCCcc-chhH----HHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence 322 233444445555555555544 2444 4444444455555444444 344444444444444444
Q ss_pred CCCCCCCcc
Q 035976 158 ENNIEGSRT 166 (203)
Q Consensus 158 ~N~l~~~lp 166 (203)
+|++.+.+|
T Consensus 159 ~n~~~~~~p 167 (328)
T 4fcg_A 159 ACPELTELP 167 (328)
T ss_dssp EETTCCCCC
T ss_pred CCCCccccC
Confidence 444333333
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.86 E-value=1.1e-21 Score=177.50 Aligned_cols=79 Identities=19% Similarity=0.215 Sum_probs=55.2
Q ss_pred cCChHHHHHHHHHHhhccccCCccccccccCCCCCCCC-CCCCC--CCCC------------CccccCCCCCCeeEEecC
Q 035976 6 CCLQKERIGLLALKSFFISISDTEYAEEILTSWVDDDG-MSSDC--SNDW------------DGVKCNATTRRVMHLLLN 70 (203)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~~~~~--c~~w------------~gv~c~~~~~~v~~l~l~ 70 (203)
++..+|++||++||+++. +| +|..+.+ .+.+| | .| .||.|+. .++|+.|+|+
T Consensus 265 ~~~~~d~~ALl~~k~~l~-----~~------~W~~~~~~~~~~~~~C-~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls 331 (876)
T 4ecn_A 265 AEYIKDYKALKAIWEALD-----GK------NWRYYSGTINNTIHSL-NWNFNKELDMWGDQPGVDLDN-NGRVTGLSLA 331 (876)
T ss_dssp CHHHHHHHHHHHHHHHTT-----GG------GCCCCCSSCSSCCCCC-SCCCSSCGGGTTCCTTEEECT-TSCEEEEECT
T ss_pred ccchHHHHHHHHHHHHcC-----CC------CCCcCCCcccccCCcc-ccccccccccccCcCceEecC-CCCEEEEECc
Confidence 356689999999999997 55 4654320 00244 9 99 9999986 6899999999
Q ss_pred CccccccccCccccccccCCccCCCCCCCCEEEc-cCCc
Q 035976 71 DTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDL-SLNA 108 (203)
Q Consensus 71 ~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L-~~N~ 108 (203)
++ ++.|. .|+.+++|++|++|+| ++|.
T Consensus 332 ~~---~L~G~--------ip~~l~~L~~L~~LdLss~N~ 359 (876)
T 4ecn_A 332 GF---GAKGR--------VPDAIGQLTELKVLSFGTHSE 359 (876)
T ss_dssp TT---CCEEE--------ECGGGGGCTTCCEEESCCTTH
T ss_pred cC---CCCCc--------CchHHhccccceEeeeccccc
Confidence 98 65543 2455666666666666 5553
No 6
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.81 E-value=5.3e-19 Score=139.73 Aligned_cols=106 Identities=25% Similarity=0.308 Sum_probs=56.0
Q ss_pred CCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCC
Q 035976 93 FHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSN 172 (203)
Q Consensus 93 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~ 172 (203)
|..+++|++|++++|.++...+. .+..+++|++|++++|.++...+..+..+++|+.|++++|.+++ +|...|..
T Consensus 81 ~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~ 155 (270)
T 2o6q_A 81 FKELKNLETLWVTDNKLQALPIG----VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDK 155 (270)
T ss_dssp TSSCTTCCEEECCSSCCCCCCTT----TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTT
T ss_pred hcCCCCCCEEECCCCcCCcCCHh----HcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc-cCHhHccC
Confidence 34444444444444444442222 33445555555555555554444445555555555555555555 44434555
Q ss_pred CCCCcEEEEe-----------cCCCCCCCEEEccCCCCCcCC
Q 035976 173 LRNLQLLDLR-----------LANLTNLKTLDLRDCGITTIQ 203 (203)
Q Consensus 173 l~~L~~L~l~-----------~~~l~~L~~L~L~~N~l~~ip 203 (203)
+++|++|+++ +..+++|+.|+|++|+|+++|
T Consensus 156 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (270)
T 2o6q_A 156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP 197 (270)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC
Confidence 6666666665 445566666666666666553
No 7
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=9.8e-19 Score=135.25 Aligned_cols=138 Identities=21% Similarity=0.262 Sum_probs=113.9
Q ss_pred CCCCCCCCccccCCCC---------CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccch
Q 035976 46 SDCSNDWDGVKCNATT---------RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENR 116 (203)
Q Consensus 46 ~~~c~~w~gv~c~~~~---------~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~ 116 (203)
...| .|.+|.|.... ..++.|+++++ .+.+. .+..|..+++|++|+|++|.++...+.
T Consensus 16 ~~~C-s~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n--------~i~~~---~~~~~~~l~~L~~L~L~~N~l~~i~~~- 82 (229)
T 3e6j_A 16 QCSC-SGTTVDCRSKRHASVPAGIPTNAQILYLHDN--------QITKL---EPGVFDSLINLKELYLGSNQLGALPVG- 82 (229)
T ss_dssp TCEE-ETTEEECTTSCCSSCCSCCCTTCSEEECCSS--------CCCCC---CTTTTTTCTTCCEEECCSSCCCCCCTT-
T ss_pred CCEE-eCCEeEccCCCcCccCCCCCCCCCEEEcCCC--------ccCcc---CHHHhhCccCCcEEECCCCCCCCcChh-
Confidence 5789 99999997521 23445555554 43333 467889999999999999999884444
Q ss_pred hhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe-----------cCC
Q 035976 117 AYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-----------LAN 185 (203)
Q Consensus 117 ~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~-----------~~~ 185 (203)
.+..+++|++|+|++|+++...+..+..+++|+.|++++|+++. +|. .+..+++|++|+++ +..
T Consensus 83 ---~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-lp~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 157 (229)
T 3e6j_A 83 ---VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE-LPR-GIERLTHLTHLALDQNQLKSIPHGAFDR 157 (229)
T ss_dssp ---TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCS-CCT-TGGGCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred ---hcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccc-cCc-ccccCCCCCEEECCCCcCCccCHHHHhC
Confidence 67889999999999999997666778999999999999999997 986 78999999999998 677
Q ss_pred CCCCCEEEccCCCCCc
Q 035976 186 LTNLKTLDLRDCGITT 201 (203)
Q Consensus 186 l~~L~~L~L~~N~l~~ 201 (203)
+++|+.|+|++|.++.
T Consensus 158 l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 158 LSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CTTCCEEECTTSCBCT
T ss_pred CCCCCEEEeeCCCccC
Confidence 8899999999999863
No 8
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.80 E-value=3.5e-19 Score=139.36 Aligned_cols=108 Identities=25% Similarity=0.337 Sum_probs=61.6
Q ss_pred CccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhh
Q 035976 90 FSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEG 169 (203)
Q Consensus 90 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~ 169 (203)
+..|.++++|++|++++|.+++..+. .+..+++|++|++++|.++...+..+..+++|+.|++++|++++ ++...
T Consensus 52 ~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~ 126 (251)
T 3m19_A 52 DATFRGLTKLTWLNLDYNQLQTLSAG----VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS-LPSGV 126 (251)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTT
T ss_pred HhHhcCcccCCEEECCCCcCCccCHh----HhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCC-cChhH
Confidence 44556666666666666666664443 45556666666666666664444455556666666666666655 44434
Q ss_pred hCCCCCCcEEEEe-----------cCCCCCCCEEEccCCCCCcC
Q 035976 170 LSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGITTI 202 (203)
Q Consensus 170 ~~~l~~L~~L~l~-----------~~~l~~L~~L~L~~N~l~~i 202 (203)
|..+++|++|+++ +..+++|+.|+|++|+|+++
T Consensus 127 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 127 FDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred hccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 5555666666555 34455555555555555544
No 9
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.78 E-value=5.9e-18 Score=128.62 Aligned_cols=137 Identities=21% Similarity=0.232 Sum_probs=110.7
Q ss_pred CCCCCCccccCCCC---------CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhh
Q 035976 48 CSNDWDGVKCNATT---------RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAY 118 (203)
Q Consensus 48 ~c~~w~gv~c~~~~---------~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 118 (203)
.| .|.++.|.... .+++.|+++++ .+.+. .+..+..+++|++|++++|.+++..+.
T Consensus 6 ~C-~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n---~l~~~--------~~~~~~~l~~L~~L~l~~n~l~~~~~~--- 70 (208)
T 2o6s_A 6 SC-SGTTVECYSQGRTSVPTGIPAQTTYLDLETN---SLKSL--------PNGVFDELTSLTQLYLGGNKLQSLPNG--- 70 (208)
T ss_dssp EE-ETTEEECCSSCCSSCCSCCCTTCSEEECCSS---CCCCC--------CTTTTTTCTTCSEEECCSSCCCCCCTT---
T ss_pred EE-CCCEEEecCCCccCCCCCCCCCCcEEEcCCC---ccCcC--------ChhhhcccccCcEEECCCCccCccChh---
Confidence 37 89999996521 24556666665 44332 456688999999999999999984443
Q ss_pred hccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe-----------cCCCC
Q 035976 119 DSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-----------LANLT 187 (203)
Q Consensus 119 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~-----------~~~l~ 187 (203)
.+..+++|++|++++|.++...+..+..+++|+.|++++|++++ ++...|..+++|++|+++ +..++
T Consensus 71 -~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 148 (208)
T 2o6s_A 71 -VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT 148 (208)
T ss_dssp -TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred -hcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcc-cCHhHhccCCcCCEEECCCCccceeCHHHhccCC
Confidence 57889999999999999997666678899999999999999998 776568999999999998 67788
Q ss_pred CCCEEEccCCCCCc
Q 035976 188 NLKTLDLRDCGITT 201 (203)
Q Consensus 188 ~L~~L~L~~N~l~~ 201 (203)
+|+.|++++|.+.+
T Consensus 149 ~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 149 SLQYIWLHDNPWDC 162 (208)
T ss_dssp TCCEEECCSCCBCC
T ss_pred CccEEEecCCCeec
Confidence 99999999998764
No 10
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=6.5e-18 Score=129.91 Aligned_cols=135 Identities=23% Similarity=0.381 Sum_probs=112.0
Q ss_pred CCCCCccccCCCC---------CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhh
Q 035976 49 SNDWDGVKCNATT---------RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYD 119 (203)
Q Consensus 49 c~~w~gv~c~~~~---------~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 119 (203)
| .|..+.|.+.. ..++.|+++++ .+.+ . ++..|..+++|++|+|++|.+++..|.
T Consensus 11 C-~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n---~i~~-----i---~~~~~~~l~~L~~L~Ls~N~i~~~~~~---- 74 (220)
T 2v9t_B 11 C-SNNIVDCRGKGLTEIPTNLPETITEIRLEQN---TIKV-----I---PPGAFSPYKKLRRIDLSNNQISELAPD---- 74 (220)
T ss_dssp E-ETTEEECTTSCCSSCCSSCCTTCCEEECCSS---CCCE-----E---CTTSSTTCTTCCEEECCSSCCCEECTT----
T ss_pred E-CCCEEEcCCCCcCcCCCccCcCCCEEECCCC---cCCC-----c---CHhHhhCCCCCCEEECCCCcCCCcCHH----
Confidence 7 78888886421 24556666555 4433 2 466889999999999999999997677
Q ss_pred ccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe-----------cCCCCC
Q 035976 120 SNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-----------LANLTN 188 (203)
Q Consensus 120 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~-----------~~~l~~ 188 (203)
.|..+++|++|+|++|.++...+..|..+++|+.|+|++|++++ +++..|..+++|++|+++ +..+++
T Consensus 75 ~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 153 (220)
T 2v9t_B 75 AFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153 (220)
T ss_dssp TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred HhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCE-eCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCC
Confidence 89999999999999999996555667899999999999999998 655589999999999998 677889
Q ss_pred CCEEEccCCCCC
Q 035976 189 LKTLDLRDCGIT 200 (203)
Q Consensus 189 L~~L~L~~N~l~ 200 (203)
|+.|+|++|.+.
T Consensus 154 L~~L~L~~N~~~ 165 (220)
T 2v9t_B 154 IQTMHLAQNPFI 165 (220)
T ss_dssp CCEEECCSSCEE
T ss_pred CCEEEeCCCCcC
Confidence 999999999874
No 11
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=1.2e-17 Score=128.35 Aligned_cols=137 Identities=22% Similarity=0.308 Sum_probs=111.2
Q ss_pred CCCCCccccCCCC---------CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhh
Q 035976 49 SNDWDGVKCNATT---------RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYD 119 (203)
Q Consensus 49 c~~w~gv~c~~~~---------~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 119 (203)
| .|..+.|.... ..++.|+++++ .+.+.. +...|..+++|++|++++|.+++..+.
T Consensus 11 C-~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N--------~l~~~~--~~~~~~~l~~L~~L~L~~N~i~~i~~~---- 75 (220)
T 2v70_A 11 C-EGTTVDCSNQKLNKIPEHIPQYTAELRLNNN--------EFTVLE--ATGIFKKLPQLRKINFSNNKITDIEEG---- 75 (220)
T ss_dssp E-ETTEEECCSSCCSSCCSCCCTTCSEEECCSS--------CCCEEC--CCCCGGGCTTCCEEECCSSCCCEECTT----
T ss_pred E-CCCEeEeCCCCcccCccCCCCCCCEEEcCCC--------cCCccC--chhhhccCCCCCEEECCCCcCCEECHH----
Confidence 6 78888886421 12344544444 443332 235688999999999999999996665
Q ss_pred ccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe-----------cCCCCC
Q 035976 120 SNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-----------LANLTN 188 (203)
Q Consensus 120 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~-----------~~~l~~ 188 (203)
.+..+++|++|++++|.+++..+..|..+++|+.|++++|++++ +++..|..+++|++|+++ +..+++
T Consensus 76 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 154 (220)
T 2v70_A 76 AFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITC-VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHS 154 (220)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCC-BCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTT
T ss_pred HhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCe-ECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCC
Confidence 78999999999999999998888889999999999999999999 654589999999999998 778899
Q ss_pred CCEEEccCCCCCc
Q 035976 189 LKTLDLRDCGITT 201 (203)
Q Consensus 189 L~~L~L~~N~l~~ 201 (203)
|+.|+|++|.++.
T Consensus 155 L~~L~L~~N~l~c 167 (220)
T 2v70_A 155 LSTLNLLANPFNC 167 (220)
T ss_dssp CCEEECCSCCEEC
T ss_pred CCEEEecCcCCcC
Confidence 9999999998753
No 12
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.74 E-value=1.4e-17 Score=144.78 Aligned_cols=125 Identities=30% Similarity=0.323 Sum_probs=106.9
Q ss_pred CeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCCh
Q 035976 63 RVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSIL 142 (203)
Q Consensus 63 ~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p 142 (203)
.++.|+|+++ .+++. ++..|.++++|++|+|++|.+++..+. .|.++++|++|+|++|+++...+
T Consensus 53 ~~~~LdLs~N---~i~~l--------~~~~f~~l~~L~~L~Ls~N~i~~i~~~----~f~~L~~L~~L~Ls~N~l~~l~~ 117 (635)
T 4g8a_A 53 STKNLDLSFN---PLRHL--------GSYSFFSFPELQVLDLSRCEIQTIEDG----AYQSLSHLSTLILTGNPIQSLAL 117 (635)
T ss_dssp TCCEEECTTS---CCCEE--------CTTTTTTCTTCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCEECG
T ss_pred CCCEEEeeCC---CCCCC--------CHHHHhCCCCCCEEECCCCcCCCcChh----HhcCCCCCCEEEccCCcCCCCCH
Confidence 4566666666 54433 467899999999999999999995555 78899999999999999997666
Q ss_pred hhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe------------cCCCCCCCEEEccCCCCCcCC
Q 035976 143 PYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR------------LANLTNLKTLDLRDCGITTIQ 203 (203)
Q Consensus 143 ~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~------------~~~l~~L~~L~L~~N~l~~ip 203 (203)
..|..+++|++|++++|++++ ++...|+.+++|++|+++ +..+++|++|++++|+|++++
T Consensus 118 ~~f~~L~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 189 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 189 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred HHhcCCCCCCEEECCCCcCCC-CChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccc
Confidence 789999999999999999998 776679999999999998 567889999999999998763
No 13
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.71 E-value=2.8e-16 Score=122.74 Aligned_cols=108 Identities=25% Similarity=0.308 Sum_probs=96.5
Q ss_pred CCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchh
Q 035976 89 NFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIE 168 (203)
Q Consensus 89 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~ 168 (203)
.+..|..+++|++|++++|.+++..+. .+..+++|++|++++|++++..+..+..+++|+.|++++|++++ ++..
T Consensus 75 ~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~ 149 (251)
T 3m19_A 75 SAGVFDDLTELGTLGLANNQLASLPLG----VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS-IPAG 149 (251)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTT
T ss_pred CHhHhccCCcCCEEECCCCcccccChh----HhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc-cCHH
Confidence 466789999999999999999985555 77899999999999999997666678899999999999999998 7766
Q ss_pred hhCCCCCCcEEEEe-----------cCCCCCCCEEEccCCCCCc
Q 035976 169 GLSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGITT 201 (203)
Q Consensus 169 ~~~~l~~L~~L~l~-----------~~~l~~L~~L~L~~N~l~~ 201 (203)
.|..+++|++|+++ +..+++|+.|+|++|.++.
T Consensus 150 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 150 AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred HcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 79999999999998 6778899999999999875
No 14
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.70 E-value=8.7e-17 Score=132.17 Aligned_cols=138 Identities=22% Similarity=0.242 Sum_probs=109.9
Q ss_pred CCCCCccccCCCC---------CCeeEEecCCccccccccCccccccccCCccCC-CCCCCCEEEccCCcCCCcccchhh
Q 035976 49 SNDWDGVKCNATT---------RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFH-PFEELQSLDLSLNAFEGFYENRAY 118 (203)
Q Consensus 49 c~~w~gv~c~~~~---------~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~-~l~~L~~L~L~~N~l~~~~p~~~~ 118 (203)
| .+..+.|.... ..++.|+|+++ .+ .+. .+..+. .+++|++|+|++|.+++..+.
T Consensus 18 C-~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N---~l-----~~l---~~~~~~~~l~~L~~L~L~~N~i~~i~~~--- 82 (361)
T 2xot_A 18 C-ASNILSCSKQQLPNVPQSLPSYTALLDLSHN---NL-----SRL---RAEWTPTRLTNLHSLLLSHNHLNFISSE--- 82 (361)
T ss_dssp E-ETTEEECCSSCCSSCCSSCCTTCSEEECCSS---CC-----CEE---CTTSSSSCCTTCCEEECCSSCCCEECTT---
T ss_pred E-CCCEEEeCCCCcCccCccCCCCCCEEECCCC---CC-----Ccc---ChhhhhhcccccCEEECCCCcCCccChh---
Confidence 6 67777885421 22445555555 43 333 356676 899999999999999995555
Q ss_pred hccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe-----------c---C
Q 035976 119 DSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-----------L---A 184 (203)
Q Consensus 119 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~-----------~---~ 184 (203)
.|..+++|++|+|++|+++...+..|..+++|+.|+|++|++++ +++..|..+++|++|+|+ + .
T Consensus 83 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~ 160 (361)
T 2xot_A 83 -AFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV-VDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGN 160 (361)
T ss_dssp -TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCSCCGGGTC---
T ss_pred -hccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccE-ECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcc
Confidence 78899999999999999997666788999999999999999998 655589999999999998 2 5
Q ss_pred CCCCCCEEEccCCCCCcCC
Q 035976 185 NLTNLKTLDLRDCGITTIQ 203 (203)
Q Consensus 185 ~l~~L~~L~L~~N~l~~ip 203 (203)
.+++|+.|+|++|+|+.+|
T Consensus 161 ~l~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 161 KLPKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp -CTTCCEEECCSSCCCCCC
T ss_pred cCCcCCEEECCCCCCCccC
Confidence 6899999999999999876
No 15
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.70 E-value=4.9e-16 Score=122.64 Aligned_cols=109 Identities=24% Similarity=0.319 Sum_probs=74.2
Q ss_pred CccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhh
Q 035976 90 FSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEG 169 (203)
Q Consensus 90 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~ 169 (203)
+..|..+++|++|++++|.++...+. .+..+++|++|++++|.++...+..+..+++|+.|++++|++++ ++...
T Consensus 54 ~~~~~~l~~L~~L~l~~n~l~~i~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~ 128 (270)
T 2o6q_A 54 SKAFHRLTKLRLLYLNDNKLQTLPAG----IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS-LPPRV 128 (270)
T ss_dssp TTSSSSCTTCCEEECCSSCCSCCCTT----TTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCC-CCTTT
T ss_pred HHHhcCCCCCCEEECCCCccCeeChh----hhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCe-eCHHH
Confidence 45667777777777777777763332 45667777777777777775555566677777777777777776 55445
Q ss_pred hCCCCCCcEEEEe-----------cCCCCCCCEEEccCCCCCcCC
Q 035976 170 LSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGITTIQ 203 (203)
Q Consensus 170 ~~~l~~L~~L~l~-----------~~~l~~L~~L~L~~N~l~~ip 203 (203)
|..+++|++|+++ +..+++|+.|+|++|+|+++|
T Consensus 129 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 129 FDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred hCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 6777777777776 456677777777777776654
No 16
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.69 E-value=1.6e-17 Score=148.04 Aligned_cols=176 Identities=15% Similarity=0.082 Sum_probs=106.9
Q ss_pred ChHHHHHHHHHHhhccccCCccccccccCCCCCCCCCCCCCCCCCCccccCCCCCCeeEEecCCc----------ccccc
Q 035976 8 LQKERIGLLALKSFFISISDTEYAEEILTSWVDDDGMSSDCSNDWDGVKCNATTRRVMHLLLNDT----------AKFNF 77 (203)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~c~~w~gv~c~~~~~~v~~l~l~~~----------~~l~l 77 (203)
.+.+++++++++.+.. .+.+.....|.... ...+ .|.++.+.. .+++.++|.++ ..++|
T Consensus 130 ~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~---~~~~-~~~~~~~s~--~~~~~l~L~~n~~~~~~~~~l~~l~L 198 (727)
T 4b8c_D 130 VDCTKQALMEMADTLT-----DSKTAKKQQPTGDS---TPSG-TATNSAVST--PLTPKIELFANGKDEANQALLQHKKL 198 (727)
T ss_dssp --CCCHHHHHHHHHHH-----HHHTTC-----------------------------------------------------
T ss_pred cccchhhhhhhhhhcc-----cccCcccCCCcCCC---Cccc-cCCCceecC--CccceEEeeCCCCCcchhhHhhcCcc
Confidence 4567889999998875 33323445576532 3556 888877743 55666666444 12233
Q ss_pred ccCcccccc------ccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCC
Q 035976 78 SYNSLFGVS------LMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISL 151 (203)
Q Consensus 78 ~~~~l~~~~------~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 151 (203)
+.+.+.+.. .+.+..+..++.|+.|+|++|.+.. +|. .+..+++|++|+|++|.++ .+|..|..+++|
T Consensus 199 s~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~----~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L 272 (727)
T 4b8c_D 199 SQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFN-ISA----NIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNL 272 (727)
T ss_dssp -----------------------CCCCCCEEECTTSCCSC-CCG----GGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTC
T ss_pred CcccccCccccccceecChhhhccCCCCcEEECCCCCCCC-CCh----hhcCCCCCCEEEeeCCcCc-ccChhhhCCCCC
Confidence 333332211 2346778899999999999999996 787 7778999999999999999 889999999999
Q ss_pred cEEeccCCCCCCCcchhhhCCCCCCcEEEEe----------cCCCCCCCEEEccCCCCCcC
Q 035976 152 TTLILRENNIEGSRTIEGLSNLRNLQLLDLR----------LANLTNLKTLDLRDCGITTI 202 (203)
Q Consensus 152 ~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~----------~~~l~~L~~L~L~~N~l~~i 202 (203)
+.|+|++|+|+. +|. .|..+++|++|+|+ ++.+++|+.|+|++|.|++.
T Consensus 273 ~~L~Ls~N~l~~-lp~-~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 273 RVLDLSHNRLTS-LPA-ELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp CEEECTTSCCSS-CCS-SGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred CEEeCcCCcCCc-cCh-hhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCC
Confidence 999999999996 986 89999999999998 78889999999999999864
No 17
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.69 E-value=5.6e-16 Score=123.02 Aligned_cols=108 Identities=24% Similarity=0.289 Sum_probs=72.4
Q ss_pred CccCCCCCCCCEEEccCCc-CCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchh
Q 035976 90 FSLFHPFEELQSLDLSLNA-FEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIE 168 (203)
Q Consensus 90 ~~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~ 168 (203)
+..+..+++|++|++++|. +....|. .+..+++|++|++++|.+++..|..+..+++|+.|++++|++++ ++..
T Consensus 73 ~~~~~~l~~L~~L~l~~n~~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~ 147 (285)
T 1ozn_A 73 AAAFTGLALLEQLDLSDNAQLRSVDPA----TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDD 147 (285)
T ss_dssp TTTTTTCTTCCEEECCSCTTCCCCCTT----TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTT
T ss_pred HhhcCCccCCCEEeCCCCCCccccCHH----HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc-cCHh
Confidence 4556666677777777775 5553344 56667777777777777776556666677777777777777776 5544
Q ss_pred hhCCCCCCcEEEEe-----------cCCCCCCCEEEccCCCCCcC
Q 035976 169 GLSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGITTI 202 (203)
Q Consensus 169 ~~~~l~~L~~L~l~-----------~~~l~~L~~L~L~~N~l~~i 202 (203)
.+..+++|++|+++ +..+++|+.|++++|+|+++
T Consensus 148 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 192 (285)
T 1ozn_A 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred HhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccccc
Confidence 56677777777776 55667777777777777654
No 18
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=130.80 Aligned_cols=139 Identities=28% Similarity=0.340 Sum_probs=97.4
Q ss_pred CCCCCCCCccccCCCC-----------CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCccc
Q 035976 46 SDCSNDWDGVKCNATT-----------RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYE 114 (203)
Q Consensus 46 ~~~c~~w~gv~c~~~~-----------~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p 114 (203)
...| .|.++ |+... ..++.|+++++ .+.+. ++..+.++++|++|++++|.+++..+
T Consensus 27 ~~~C-~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n---~i~~~--------~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (353)
T 2z80_A 27 SLSC-DRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNN---RITYI--------SNSDLQRCVNLQALVLTSNGINTIEE 93 (353)
T ss_dssp CCEE-CTTSE-EECCSTTCSSCCTTCCTTCCEEECTTS---CCCEE--------CTTTTTTCTTCCEEECTTSCCCEECT
T ss_pred CCCC-CCCeE-eeCCCCCcccccccccccCcEEECCCC---cCccc--------CHHHhccCCCCCEEECCCCccCccCH
Confidence 4678 89887 54221 24556666665 43332 34567788888888888888887555
Q ss_pred chhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcch-hhhCCCCCCcEEEEe-----------
Q 035976 115 NRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTI-EGLSNLRNLQLLDLR----------- 182 (203)
Q Consensus 115 ~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~-~~~~~l~~L~~L~l~----------- 182 (203)
. .+..+++|++|++++|+++...+..+..+++|++|++++|++++ +|. ..+..+++|++|+++
T Consensus 94 ~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 168 (353)
T 2z80_A 94 D----SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQRK 168 (353)
T ss_dssp T----TTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCEECTT
T ss_pred h----hcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCCccccccCHH
Confidence 5 67778888888888888885555557788888888888888876 664 357778888888776
Q ss_pred -cCCCCCCCEEEccCCCCCcC
Q 035976 183 -LANLTNLKTLDLRDCGITTI 202 (203)
Q Consensus 183 -~~~l~~L~~L~L~~N~l~~i 202 (203)
+..+++|+.|++++|+++++
T Consensus 169 ~~~~l~~L~~L~l~~n~l~~~ 189 (353)
T 2z80_A 169 DFAGLTFLEELEIDASDLQSY 189 (353)
T ss_dssp TTTTCCEEEEEEEEETTCCEE
T ss_pred HccCCCCCCEEECCCCCcCcc
Confidence 55666777777777776654
No 19
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.69 E-value=7.8e-16 Score=121.66 Aligned_cols=107 Identities=24% Similarity=0.268 Sum_probs=73.0
Q ss_pred CccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhh
Q 035976 90 FSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEG 169 (203)
Q Consensus 90 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~ 169 (203)
+..+..+++|++|++++|.+++..+. .+..+++|++|++++|.+++..+..+..+++|+.|++++|++++ ++...
T Consensus 102 ~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~ 176 (272)
T 3rfs_A 102 NGVFDKLTNLKELVLVENQLQSLPDG----VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGV 176 (272)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTT
T ss_pred hhHhcCCcCCCEEECCCCcCCccCHH----HhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc-cCHHH
Confidence 44566677777777777777764443 46667777777777777775555556677777777777777776 55445
Q ss_pred hCCCCCCcEEEEe-----------cCCCCCCCEEEccCCCCCc
Q 035976 170 LSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGITT 201 (203)
Q Consensus 170 ~~~l~~L~~L~l~-----------~~~l~~L~~L~L~~N~l~~ 201 (203)
+..+++|++|+++ +..+++|+.|++++|.+.+
T Consensus 177 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 177 FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 219 (272)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc
Confidence 6677777777776 4566777777777777654
No 20
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.68 E-value=1.3e-15 Score=120.44 Aligned_cols=125 Identities=26% Similarity=0.262 Sum_probs=105.8
Q ss_pred CCCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCC
Q 035976 61 TRRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDS 140 (203)
Q Consensus 61 ~~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~ 140 (203)
...++.++++++ .+.+. ..+..+++|++|++++|.+++..+. .+..+++|++|++++|++++.
T Consensus 62 l~~L~~L~l~~n---~l~~~----------~~l~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~ 124 (272)
T 3rfs_A 62 LPNVRYLALGGN---KLHDI----------SALKELTNLTYLILTGNQLQSLPNG----VFDKLTNLKELVLVENQLQSL 124 (272)
T ss_dssp CTTCCEEECTTS---CCCCC----------GGGTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECTTSCCCCC
T ss_pred CCCCcEEECCCC---CCCCc----------hhhcCCCCCCEEECCCCccCccChh----HhcCCcCCCEEECCCCcCCcc
Confidence 345778887777 55432 3678899999999999999985554 678899999999999999977
Q ss_pred ChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe-----------cCCCCCCCEEEccCCCCCcCC
Q 035976 141 ILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGITTIQ 203 (203)
Q Consensus 141 ~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~-----------~~~l~~L~~L~L~~N~l~~ip 203 (203)
.+..+..+++|+.|++++|++++ ++...+..+++|++|+++ +..+++|+.|++++|+|+++|
T Consensus 125 ~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (272)
T 3rfs_A 125 PDGVFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP 197 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CHHHhccCCCCCEEECCCCccCc-cCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC
Confidence 77778999999999999999998 776568899999999998 577899999999999998875
No 21
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.68 E-value=8.7e-17 Score=140.29 Aligned_cols=108 Identities=19% Similarity=0.217 Sum_probs=64.0
Q ss_pred CccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhh
Q 035976 90 FSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEG 169 (203)
Q Consensus 90 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~ 169 (203)
+..+..+++|++|++++|.+++..|. .+..+++|++|+|++|.+++..|..|..+++|+.|+|++|.+++ +|...
T Consensus 68 ~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~ 142 (597)
T 3oja_B 68 AALLDSFRQVELLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGI 142 (597)
T ss_dssp THHHHHCCCCSEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTT
T ss_pred HHHHccCCCCcEEECCCCCCCCCChH----HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC-CCHHH
Confidence 44455566666666666666664444 55566666666666666665555555666666666666666665 55434
Q ss_pred hCCCCCCcEEEEe-----------cCCCCCCCEEEccCCCCCcC
Q 035976 170 LSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGITTI 202 (203)
Q Consensus 170 ~~~l~~L~~L~l~-----------~~~l~~L~~L~L~~N~l~~i 202 (203)
|..+++|++|+++ +..+++|+.|+|++|.|+++
T Consensus 143 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 186 (597)
T 3oja_B 143 FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 186 (597)
T ss_dssp TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred hccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc
Confidence 5566666666665 45555666666666665544
No 22
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.68 E-value=5.6e-16 Score=130.77 Aligned_cols=136 Identities=26% Similarity=0.316 Sum_probs=100.1
Q ss_pred CCccccCCCC---------CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccC
Q 035976 52 WDGVKCNATT---------RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNG 122 (203)
Q Consensus 52 w~gv~c~~~~---------~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~ 122 (203)
|..+.|.... ..++.|+++++ .+.+ . .+..|..+++|++|+|++|.+++..+. .+.
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n---~i~~-----~---~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~ 120 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMEN---NIQM-----I---QADTFRHLHHLEVLQLGRNSIRQIEVG----AFN 120 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSS---CCCE-----E---CTTTTTTCTTCCEEECCSSCCCEECTT----TTT
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCC---cCce-----E---CHHHcCCCCCCCEEECCCCccCCcChh----hcc
Confidence 5677775421 24555666555 4333 2 467788889999999999998886555 788
Q ss_pred CCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe------------cCCCCCCC
Q 035976 123 SLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR------------LANLTNLK 190 (203)
Q Consensus 123 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~------------~~~l~~L~ 190 (203)
.+++|++|+|++|.++...+..+..+++|+.|++++|+++. ++...|..+++|++|+++ +..+++|+
T Consensus 121 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~ 199 (452)
T 3zyi_A 121 GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLK 199 (452)
T ss_dssp TCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCE-ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCC
T ss_pred CcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcce-eCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCC
Confidence 88899999999998886666668888889999999988886 666577788888888775 55666777
Q ss_pred EEEccCCCCCcCC
Q 035976 191 TLDLRDCGITTIQ 203 (203)
Q Consensus 191 ~L~L~~N~l~~ip 203 (203)
.|+|++|+|+++|
T Consensus 200 ~L~L~~n~l~~~~ 212 (452)
T 3zyi_A 200 YLNLGMCNIKDMP 212 (452)
T ss_dssp EEECTTSCCSSCC
T ss_pred EEECCCCcccccc
Confidence 7777777766654
No 23
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.68 E-value=6.9e-16 Score=118.52 Aligned_cols=102 Identities=27% Similarity=0.335 Sum_probs=93.6
Q ss_pred CCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCC
Q 035976 97 EELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNL 176 (203)
Q Consensus 97 ~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L 176 (203)
+.+++|++++|.+++..+. .+..+++|++|++++|++++..|..|..+++|+.|+|++|+++. +|...|..+++|
T Consensus 32 ~~l~~L~l~~n~i~~i~~~----~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~L 106 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPG----AFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE-LPKSLFEGLFSL 106 (220)
T ss_dssp TTCCEEECCSSCCCEECTT----SSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred cCCCEEECCCCcCCCcCHh----HhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCc-cCHhHccCCCCC
Confidence 6899999999999985555 78899999999999999998888999999999999999999998 887678999999
Q ss_pred cEEEEe-----------cCCCCCCCEEEccCCCCCcCC
Q 035976 177 QLLDLR-----------LANLTNLKTLDLRDCGITTIQ 203 (203)
Q Consensus 177 ~~L~l~-----------~~~l~~L~~L~L~~N~l~~ip 203 (203)
++|+++ +..+++|+.|+|++|+|++++
T Consensus 107 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 144 (220)
T 2v9t_B 107 QLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA 144 (220)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC
Confidence 999998 778899999999999998875
No 24
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.67 E-value=1.1e-16 Score=132.50 Aligned_cols=106 Identities=19% Similarity=0.218 Sum_probs=58.6
Q ss_pred ccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhh
Q 035976 91 SLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGL 170 (203)
Q Consensus 91 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~ 170 (203)
..+..+++|++|++++|.+++..+. .+..+++|++|++++|.+++..|..+..+++|+.|++++|+++. +|...|
T Consensus 63 ~~~~~l~~L~~L~L~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~ 137 (390)
T 3o6n_A 63 ALLDSFRQVELLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIF 137 (390)
T ss_dssp HHHHHCCCCSEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTT
T ss_pred hHhcccccCcEEECCCCcccccChh----hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc-CCHHHh
Confidence 3345555566666666655553333 45555566666666665555445555555556666666665554 554334
Q ss_pred CCCCCCcEEEEe-----------cCCCCCCCEEEccCCCCCc
Q 035976 171 SNLRNLQLLDLR-----------LANLTNLKTLDLRDCGITT 201 (203)
Q Consensus 171 ~~l~~L~~L~l~-----------~~~l~~L~~L~L~~N~l~~ 201 (203)
..+++|++|+++ +..+++|+.|++++|++++
T Consensus 138 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 138 HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp TTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred cCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence 555556655555 4445555555555555544
No 25
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.67 E-value=3.2e-16 Score=134.72 Aligned_cols=136 Identities=26% Similarity=0.341 Sum_probs=107.1
Q ss_pred CCCCCCccccCCCC-----------CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccch
Q 035976 48 CSNDWDGVKCNATT-----------RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENR 116 (203)
Q Consensus 48 ~c~~w~gv~c~~~~-----------~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~ 116 (203)
.| .|.++ |+... ..++.++++++ .+.+ . .+..|.++++|++|++++|.+++..|.
T Consensus 3 ~C-~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n---~l~~-----~---~~~~~~~l~~L~~L~Ls~n~i~~~~~~- 68 (549)
T 2z81_A 3 SC-DASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFN---KITY-----I---GHGDLRACANLQVLILKSSRINTIEGD- 68 (549)
T ss_dssp EE-CTTSE-EECTTSCCSSCCSCCCTTCCEEECCSS---CCCE-----E---CSSTTSSCTTCCEEECTTSCCCEECTT-
T ss_pred cC-CCCce-EECCCCccccccccCCCCccEEECcCC---ccCc-----c---ChhhhhcCCcccEEECCCCCcCccChh-
Confidence 47 77777 65321 24566666665 4433 2 367788999999999999999986666
Q ss_pred hhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCC-CcchhhhCCCCCCcEEEEe------------c
Q 035976 117 AYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEG-SRTIEGLSNLRNLQLLDLR------------L 183 (203)
Q Consensus 117 ~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~lp~~~~~~l~~L~~L~l~------------~ 183 (203)
.+..+++|++|++++|.+++..|..+..+++|++|++++|++++ .+|. .+..+++|++|+++ +
T Consensus 69 ---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~ 144 (549)
T 2z81_A 69 ---AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQTLRIGNVETFSEIRRIDF 144 (549)
T ss_dssp ---TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTTTT
T ss_pred ---hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh-hhhccCCccEEECCCCccccccCHhhh
Confidence 78899999999999999998777779999999999999999986 2454 68889999999987 6
Q ss_pred CCCCCCCEEEccCCCCCc
Q 035976 184 ANLTNLKTLDLRDCGITT 201 (203)
Q Consensus 184 ~~l~~L~~L~L~~N~l~~ 201 (203)
..+++|++|++++|++++
T Consensus 145 ~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 145 AGLTSLNELEIKALSLRN 162 (549)
T ss_dssp TTCCEEEEEEEEETTCCE
T ss_pred hcccccCeeeccCCcccc
Confidence 677888999999988876
No 26
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.67 E-value=3e-16 Score=115.25 Aligned_cols=125 Identities=26% Similarity=0.207 Sum_probs=106.9
Q ss_pred CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCC
Q 035976 62 RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSI 141 (203)
Q Consensus 62 ~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~ 141 (203)
..++.++++++ .+... . .+..+..+++|++|++++|.+++. . .+..+++|++|++++|.+++.+
T Consensus 24 ~~L~~L~l~~n---~l~~~----~---i~~~~~~l~~L~~L~l~~n~l~~~--~----~~~~l~~L~~L~Ls~N~l~~~~ 87 (168)
T 2ell_A 24 AAVRELVLDNC---KSNDG----K---IEGLTAEFVNLEFLSLINVGLISV--S----NLPKLPKLKKLELSENRIFGGL 87 (168)
T ss_dssp TSCSEEECCSC---BCBTT----B---CSSCCGGGGGCCEEEEESSCCCCC--S----SCCCCSSCCEEEEESCCCCSCC
T ss_pred ccCCEEECCCC---CCChh----h---HHHHHHhCCCCCEEeCcCCCCCCh--h----hhccCCCCCEEECcCCcCchHH
Confidence 56888988888 66511 0 255678899999999999999984 5 8889999999999999999878
Q ss_pred hhhhcCCCCCcEEeccCCCCCCCcch-hhhCCCCCCcEEEEe--------------cCCCCCCCEEEccCCCCCcCC
Q 035976 142 LPYLNTLISLTTLILRENNIEGSRTI-EGLSNLRNLQLLDLR--------------LANLTNLKTLDLRDCGITTIQ 203 (203)
Q Consensus 142 p~~~~~l~~L~~L~L~~N~l~~~lp~-~~~~~l~~L~~L~l~--------------~~~l~~L~~L~L~~N~l~~ip 203 (203)
|..+..+++|+.|++++|++++ ++. ..+..+++|++|+++ +..+++|+.|++++|.+..+|
T Consensus 88 ~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 88 DMLAEKLPNLTHLNLSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp CHHHHHCTTCCEEECBSSSCCS-SGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred HHHHhhCCCCCEEeccCCccCc-chhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 8888889999999999999998 652 378999999999998 567899999999999998876
No 27
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.67 E-value=1.2e-15 Score=121.18 Aligned_cols=110 Identities=24% Similarity=0.262 Sum_probs=88.1
Q ss_pred CCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchh
Q 035976 89 NFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIE 168 (203)
Q Consensus 89 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~ 168 (203)
.+..+..+++|++|++++|.+++..+. .+..+++|++|++++|.++...+..+..+++|+.|++++|++++ ++..
T Consensus 97 ~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~ 171 (285)
T 1ozn_A 97 DPATFHGLGRLHTLHLDRCGLQELGPG----LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPER 171 (285)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE-ECTT
T ss_pred CHHHhcCCcCCCEEECCCCcCCEECHh----HhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc-cCHH
Confidence 356778888889999998888885565 67788888888888888886666667888888888888888887 6655
Q ss_pred hhCCCCCCcEEEEe-----------cCCCCCCCEEEccCCCCCcCC
Q 035976 169 GLSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGITTIQ 203 (203)
Q Consensus 169 ~~~~l~~L~~L~l~-----------~~~l~~L~~L~L~~N~l~~ip 203 (203)
.+..+++|++|+++ +..+++|+.|++++|+|+++|
T Consensus 172 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 217 (285)
T 1ozn_A 172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred HhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC
Confidence 67888888888887 667778888888888887764
No 28
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.67 E-value=9.6e-16 Score=122.49 Aligned_cols=104 Identities=29% Similarity=0.319 Sum_probs=70.4
Q ss_pred CCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCC
Q 035976 94 HPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNL 173 (203)
Q Consensus 94 ~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l 173 (203)
..+++|++|++++|.++. +|. .+..+++|++|++++|+++...|..|..+++|+.|++++|++++ +|...|..+
T Consensus 74 ~~l~~L~~L~Ls~N~l~~-l~~----~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l 147 (290)
T 1p9a_G 74 GTLPVLGTLDLSHNQLQS-LPL----LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT-LPPGLLTPT 147 (290)
T ss_dssp SCCTTCCEEECCSSCCSS-CCC----CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC-CCTTTTTTC
T ss_pred CCCCcCCEEECCCCcCCc-Cch----hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc-cChhhcccc
Confidence 456666666666666665 555 56667777777777777775555666777777777777777776 555456677
Q ss_pred CCCcEEEEe-----------cCCCCCCCEEEccCCCCCcCC
Q 035976 174 RNLQLLDLR-----------LANLTNLKTLDLRDCGITTIQ 203 (203)
Q Consensus 174 ~~L~~L~l~-----------~~~l~~L~~L~L~~N~l~~ip 203 (203)
++|+.|+++ +..+++|+.|+|++|+|+.+|
T Consensus 148 ~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip 188 (290)
T 1p9a_G 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188 (290)
T ss_dssp TTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred cCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccC
Confidence 777777776 455667777777777776654
No 29
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.67 E-value=9.8e-16 Score=128.88 Aligned_cols=136 Identities=25% Similarity=0.336 Sum_probs=98.8
Q ss_pred CCccccCCC---------CCCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccC
Q 035976 52 WDGVKCNAT---------TRRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNG 122 (203)
Q Consensus 52 w~gv~c~~~---------~~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~ 122 (203)
|..|.|... ...++.++++++ .+.. . .+..|.++++|++|+|++|.++...+. .|.
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n---~i~~-----~---~~~~~~~l~~L~~L~Ls~n~i~~i~~~----~~~ 109 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHEN---QIQI-----I---KVNSFKHLRHLEILQLSRNHIRTIEIG----AFN 109 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSC---CCCE-----E---CTTTTSSCSSCCEEECCSSCCCEECGG----GGT
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCC---cCCe-----e---CHHHhhCCCCCCEEECCCCcCCccChh----hcc
Confidence 557778541 123455555555 3333 2 356788888899999999988885555 788
Q ss_pred CCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe------------cCCCCCCC
Q 035976 123 SLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR------------LANLTNLK 190 (203)
Q Consensus 123 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~------------~~~l~~L~ 190 (203)
.+++|++|+|++|+++...+..|..+++|+.|++++|+++. ++...|..+++|++|+++ +..+++|+
T Consensus 110 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~ 188 (440)
T 3zyj_A 110 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES-IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLR 188 (440)
T ss_dssp TCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCE-ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCC
T ss_pred CCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccc-cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccC
Confidence 88889999998888886655678888888888888888887 665577788888888776 55666777
Q ss_pred EEEccCCCCCcCC
Q 035976 191 TLDLRDCGITTIQ 203 (203)
Q Consensus 191 ~L~L~~N~l~~ip 203 (203)
.|+|++|+|+.+|
T Consensus 189 ~L~L~~n~l~~~~ 201 (440)
T 3zyj_A 189 YLNLAMCNLREIP 201 (440)
T ss_dssp EEECTTSCCSSCC
T ss_pred eecCCCCcCcccc
Confidence 7777777766654
No 30
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.66 E-value=8.4e-16 Score=133.71 Aligned_cols=125 Identities=27% Similarity=0.250 Sum_probs=94.1
Q ss_pred CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCC
Q 035976 62 RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSI 141 (203)
Q Consensus 62 ~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~ 141 (203)
.+++.++++++ .+.+. .+..|.++++|++|++++|.+++..|. .|..+++|++|++++|.+++..
T Consensus 32 ~~l~~L~Ls~n---~l~~~--------~~~~~~~l~~L~~L~Ls~n~l~~i~~~----~~~~l~~L~~L~Ls~n~l~~~~ 96 (606)
T 3vq2_A 32 SSTKNIDLSFN---PLKIL--------KSYSFSNFSELQWLDLSRCEIETIEDK----AWHGLHHLSNLILTGNPIQSFS 96 (606)
T ss_dssp TTCCEEECTTS---CCCEE--------CTTTTTTCTTCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCCCC
T ss_pred CCcCEEECCCC---CcCEe--------ChhhccCCccCcEEeCCCCcccccCHH----HhhchhhcCEeECCCCcccccC
Confidence 45777777777 54433 355777888888888888888875565 6778888888888888888776
Q ss_pred hhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe------------cCCCCCCCEEEccCCCCCcC
Q 035976 142 LPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR------------LANLTNLKTLDLRDCGITTI 202 (203)
Q Consensus 142 p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~------------~~~l~~L~~L~L~~N~l~~i 202 (203)
|..|..+++|++|++++|.+++ ++...++.+++|++|+++ ++.+++|++|++++|+++++
T Consensus 97 p~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 97 PGSFSGLTSLENLVAVETKLAS-LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp TTSSTTCTTCCEEECTTSCCCC-SSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred hhhcCCcccCCEEEccCCcccc-ccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence 7788888888888888888877 554467888888888876 55677788888888877765
No 31
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.66 E-value=1.7e-15 Score=116.92 Aligned_cols=128 Identities=21% Similarity=0.153 Sum_probs=105.0
Q ss_pred CCccccCCCCCCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEE
Q 035976 52 WDGVKCNATTRRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILN 131 (203)
Q Consensus 52 w~gv~c~~~~~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~ 131 (203)
|..-.|. .+.++.+++ .+... |..+ .++|++|++++|.+++..|. .+..+++|++|+
T Consensus 14 ~~~~~Cs-----~~~v~c~~~---~l~~i---------p~~~--~~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~ 70 (229)
T 3e6j_A 14 PSQCSCS-----GTTVDCRSK---RHASV---------PAGI--PTNAQILYLHDNQITKLEPG----VFDSLINLKELY 70 (229)
T ss_dssp CTTCEEE-----TTEEECTTS---CCSSC---------CSCC--CTTCSEEECCSSCCCCCCTT----TTTTCTTCCEEE
T ss_pred CCCCEEe-----CCEeEccCC---CcCcc---------CCCC--CCCCCEEEcCCCccCccCHH----HhhCccCCcEEE
Confidence 3445663 345777776 55443 3323 27899999999999997676 889999999999
Q ss_pred ccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe----------cCCCCCCCEEEccCCCCCc
Q 035976 132 LEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR----------LANLTNLKTLDLRDCGITT 201 (203)
Q Consensus 132 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~----------~~~l~~L~~L~L~~N~l~~ 201 (203)
+++|+++...+..|..+++|+.|+|++|++++ ++...|..+++|++|+++ +..+++|+.|+|++|+|++
T Consensus 71 L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~ 149 (229)
T 3e6j_A 71 LGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV-LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKS 149 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCC
T ss_pred CCCCCCCCcChhhcccCCCcCEEECCCCcCCc-cChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCc
Confidence 99999986666678999999999999999998 776678999999999998 5677899999999999988
Q ss_pred CC
Q 035976 202 IQ 203 (203)
Q Consensus 202 ip 203 (203)
+|
T Consensus 150 ~~ 151 (229)
T 3e6j_A 150 IP 151 (229)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.66 E-value=1.4e-15 Score=128.89 Aligned_cols=125 Identities=26% Similarity=0.325 Sum_probs=82.7
Q ss_pred CeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCCh
Q 035976 63 RVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSIL 142 (203)
Q Consensus 63 ~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p 142 (203)
.++.|+++++ .+.+ . .+..|..+++|++|+|++|.+++..|. .+..+++|++|++++|.++...+
T Consensus 33 ~l~~L~L~~n---~l~~-----~---~~~~~~~l~~L~~L~L~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~ 97 (477)
T 2id5_A 33 ETRLLDLGKN---RIKT-----L---NQDEFASFPHLEELELNENIVSAVEPG----AFNNLFNLRTLGLRSNRLKLIPL 97 (477)
T ss_dssp TCSEEECCSS---CCCE-----E---CTTTTTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCSCCT
T ss_pred CCcEEECCCC---ccce-----E---CHhHccCCCCCCEEECCCCccCEeChh----hhhCCccCCEEECCCCcCCccCc
Confidence 4556666655 4333 2 355677777777777777777775565 67777777777777777775444
Q ss_pred hhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe-----------cCCCCCCCEEEccCCCCCcCC
Q 035976 143 PYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGITTIQ 203 (203)
Q Consensus 143 ~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~-----------~~~l~~L~~L~L~~N~l~~ip 203 (203)
..|..+++|+.|++++|++++ ++...|..+++|++|+++ +..+++|+.|+|++|+++++|
T Consensus 98 ~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 98 GVFTGLSNLTKLDISENKIVI-LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp TSSTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred ccccCCCCCCEEECCCCcccc-CChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence 456677777777777777776 433466777777777775 556666777777777666543
No 33
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.66 E-value=1.1e-15 Score=114.86 Aligned_cols=100 Identities=22% Similarity=0.238 Sum_probs=50.8
Q ss_pred CCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCc
Q 035976 98 ELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQ 177 (203)
Q Consensus 98 ~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~ 177 (203)
++++|++++|.+++..+.. .+..+++|++|++++|++++..|..|..+++|+.|+|++|++++ ++...|..+++|+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~ 105 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDG---LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE-ISNKMFLGLHQLK 105 (192)
T ss_dssp TCSEEECCSCCCCSBCCSC---SGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCE-ECSSSSTTCTTCC
T ss_pred CCCEEECCCCcCCccCCcc---ccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCc-cCHHHhcCCCCCC
Confidence 4455555555554422210 13444555555555555554444445555555555555555554 3332344455555
Q ss_pred EEEEe-----------cCCCCCCCEEEccCCCCCc
Q 035976 178 LLDLR-----------LANLTNLKTLDLRDCGITT 201 (203)
Q Consensus 178 ~L~l~-----------~~~l~~L~~L~L~~N~l~~ 201 (203)
+|+++ +..+++|++|+|++|.+++
T Consensus 106 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 106 TLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp EEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred EEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 55544 4556677777777777653
No 34
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.66 E-value=7.4e-16 Score=121.78 Aligned_cols=124 Identities=30% Similarity=0.330 Sum_probs=71.8
Q ss_pred CeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCCh
Q 035976 63 RVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSIL 142 (203)
Q Consensus 63 ~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p 142 (203)
.++.++++++ .+.+. .+..|.++++|++|++++|.+++..+. .+..+++|++|++++|.+++..+
T Consensus 29 ~l~~L~ls~n---~l~~~--------~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~ 93 (276)
T 2z62_A 29 STKNLDLSFN---PLRHL--------GSYSFFSFPELQVLDLSRCEIQTIEDG----AYQSLSHLSTLILTGNPIQSLAL 93 (276)
T ss_dssp TCCEEECTTC---CCCEE--------CTTTTTTCTTCSEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCEECT
T ss_pred CccEEECCCC---ccccc--------CHhHhccccCCcEEECCCCcCCccCHH----HccCCcCCCEEECCCCccCccCh
Confidence 4666666666 44332 233556666666666666666654333 45566666666666666665555
Q ss_pred hhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe------------cCCCCCCCEEEccCCCCCcC
Q 035976 143 PYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR------------LANLTNLKTLDLRDCGITTI 202 (203)
Q Consensus 143 ~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~------------~~~l~~L~~L~L~~N~l~~i 202 (203)
..+..+++|+.|++++|.+++ ++...+..+++|++|+++ +..+++|+.|++++|+|+++
T Consensus 94 ~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 94 GAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp TTTTTCTTCCEEECTTSCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred hhhcCCccccEEECCCCCccc-cCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence 556666666666666666665 433345566666666665 33445666666666665544
No 35
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.65 E-value=6.5e-16 Score=129.93 Aligned_cols=127 Identities=25% Similarity=0.277 Sum_probs=96.2
Q ss_pred CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCC
Q 035976 62 RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSI 141 (203)
Q Consensus 62 ~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~ 141 (203)
.+++.|+++++ .+.+. .+..|.++++|++|++++|.+.+.+++. .+..+++|++|++++|.+++..
T Consensus 30 ~~l~~L~Ls~n---~i~~~--------~~~~~~~l~~L~~L~L~~n~~~~~i~~~---~~~~l~~L~~L~Ls~n~l~~~~ 95 (455)
T 3v47_A 30 AHVNYVDLSLN---SIAEL--------NETSFSRLQDLQFLKVEQQTPGLVIRNN---TFRGLSSLIILKLDYNQFLQLE 95 (455)
T ss_dssp TTCCEEECCSS---CCCEE--------CTTTTSSCTTCCEEECCCCSTTCEECTT---TTTTCTTCCEEECTTCTTCEEC
T ss_pred CccCEEEecCC---ccCcC--------ChhHhccCccccEEECcCCcccceECcc---cccccccCCEEeCCCCccCccC
Confidence 34666666666 44332 3667888888999999988887655431 6778888899999888888777
Q ss_pred hhhhcCCCCCcEEeccCCCCCCCcch-hhhCCCCCCcEEEEe------------cCCCCCCCEEEccCCCCCcC
Q 035976 142 LPYLNTLISLTTLILRENNIEGSRTI-EGLSNLRNLQLLDLR------------LANLTNLKTLDLRDCGITTI 202 (203)
Q Consensus 142 p~~~~~l~~L~~L~L~~N~l~~~lp~-~~~~~l~~L~~L~l~------------~~~l~~L~~L~L~~N~l~~i 202 (203)
|..+..+++|++|++++|++++.++. ..+..+++|++|+++ +..+++|++|++++|+++++
T Consensus 96 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 96 TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred hhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 88888888888999988888874443 127888888888887 45678888888888888765
No 36
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.62 E-value=5.2e-15 Score=119.75 Aligned_cols=136 Identities=20% Similarity=0.253 Sum_probs=92.9
Q ss_pred CCCCCCccccCCC---------CCCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhh
Q 035976 48 CSNDWDGVKCNAT---------TRRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAY 118 (203)
Q Consensus 48 ~c~~w~gv~c~~~---------~~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 118 (203)
.| .|+.+.|... ...++.++++++ .+.+. .+..|..+++|++|++++|.+++..|.
T Consensus 30 ~c-~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n---~i~~~--------~~~~~~~l~~L~~L~L~~n~l~~~~~~--- 94 (330)
T 1xku_A 30 QC-HLRVVQCSDLGLEKVPKDLPPDTALLDLQNN---KITEI--------KDGDFKNLKNLHTLILINNKISKISPG--- 94 (330)
T ss_dssp EE-ETTEEECTTSCCCSCCCSCCTTCCEEECCSS---CCCCB--------CTTTTTTCTTCCEEECCSSCCCCBCTT---
T ss_pred cC-CCeEEEecCCCccccCccCCCCCeEEECCCC---cCCEe--------ChhhhccCCCCCEEECCCCcCCeeCHH---
Confidence 36 7888888641 124555666555 44332 355788888999999999988886676
Q ss_pred hccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe-------------cCC
Q 035976 119 DSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-------------LAN 185 (203)
Q Consensus 119 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~-------------~~~ 185 (203)
.+..+++|++|++++|.++ .+|..+. ++|+.|++++|++++ ++...+..+++|++|+++ +..
T Consensus 95 -~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 169 (330)
T 1xku_A 95 -AFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169 (330)
T ss_dssp -TTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCB-BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGG
T ss_pred -HhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccc-cCHhHhcCCccccEEECCCCcCCccCcChhhccC
Confidence 7888888888888888887 4554443 577777777777776 554467777777777765 344
Q ss_pred CCCCCEEEccCCCCCcCC
Q 035976 186 LTNLKTLDLRDCGITTIQ 203 (203)
Q Consensus 186 l~~L~~L~L~~N~l~~ip 203 (203)
+++|+.|++++|+++.+|
T Consensus 170 l~~L~~L~l~~n~l~~l~ 187 (330)
T 1xku_A 170 MKKLSYIRIADTNITTIP 187 (330)
T ss_dssp CTTCCEEECCSSCCCSCC
T ss_pred CCCcCEEECCCCccccCC
Confidence 566666666666666554
No 37
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.62 E-value=6.6e-15 Score=110.88 Aligned_cols=97 Identities=23% Similarity=0.317 Sum_probs=57.6
Q ss_pred CCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCc
Q 035976 98 ELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQ 177 (203)
Q Consensus 98 ~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~ 177 (203)
.|++|++++|.++. +|. .+..+++|++|++++|.+++..+..|..+++|+.|+|++|++++ ++...|..+++|+
T Consensus 32 ~l~~L~L~~n~i~~-ip~----~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~-i~~~~f~~l~~L~ 105 (193)
T 2wfh_A 32 DVTELYLDGNQFTL-VPK----ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC-IPPRTFDGLKSLR 105 (193)
T ss_dssp TCCEEECCSSCCCS-CCG----GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTCC
T ss_pred CCCEEECCCCcCch-hHH----HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE-eCHHHhCCCCCCC
Confidence 55566666666554 444 55555666666666666655444555566666666666666655 4433555566666
Q ss_pred EEEEe-----------cCCCCCCCEEEccCCCCC
Q 035976 178 LLDLR-----------LANLTNLKTLDLRDCGIT 200 (203)
Q Consensus 178 ~L~l~-----------~~~l~~L~~L~L~~N~l~ 200 (203)
+|+++ +..+++|+.|+|++|.+.
T Consensus 106 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp EEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred EEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 66655 455667777777777653
No 38
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.62 E-value=4.3e-16 Score=125.66 Aligned_cols=69 Identities=23% Similarity=0.378 Sum_probs=34.3
Q ss_pred ccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCC-CCcEEeccCCCCCC
Q 035976 91 SLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLI-SLTTLILRENNIEG 163 (203)
Q Consensus 91 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~N~l~~ 163 (203)
..+..+++|++|++++|.+++.+|. .+..+++|++|++++|.+++.+|..+..++ +|+.|++++|++++
T Consensus 119 ~~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~ 188 (313)
T 1ogq_A 119 DFLSQIKTLVTLDFSYNALSGTLPP----SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG 188 (313)
T ss_dssp GGGGGCTTCCEEECCSSEEESCCCG----GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE
T ss_pred HHHhCCCCCCEEeCCCCccCCcCCh----HHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeec
Confidence 3444455555555555555544444 444455555555555555444454444444 45555555444443
No 39
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.62 E-value=3.2e-15 Score=131.77 Aligned_cols=125 Identities=26% Similarity=0.293 Sum_probs=75.8
Q ss_pred CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCC
Q 035976 62 RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSI 141 (203)
Q Consensus 62 ~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~ 141 (203)
.+++.|+++++ .+.+. ++..|.++++|++|++++|.+++..|. .+..+++|++|++++|.++...
T Consensus 25 ~~l~~L~Ls~n---~l~~~--------~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~ 89 (680)
T 1ziw_A 25 TNITVLNLTHN---QLRRL--------PAANFTRYSQLTSLDVGFNTISKLEPE----LCQKLPMLKVLNLQHNELSQLS 89 (680)
T ss_dssp TTCSEEECCSS---CCCCC--------CGGGGGGGTTCSEEECCSSCCCCCCTT----HHHHCTTCCEEECCSSCCCCCC
T ss_pred CCCcEEECCCC---CCCCc--------CHHHHhCCCcCcEEECCCCccCccCHH----HHhcccCcCEEECCCCccCccC
Confidence 45677777776 44332 244566666666666666666665454 5556666666666666666433
Q ss_pred hhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe-----------cCCCCCCCEEEccCCCCCcC
Q 035976 142 LPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGITTI 202 (203)
Q Consensus 142 p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~-----------~~~l~~L~~L~L~~N~l~~i 202 (203)
+..|..+++|++|++++|++++ +++..|..+++|++|+++ +..+++|++|++++|+++++
T Consensus 90 ~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 160 (680)
T 1ziw_A 90 DKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL 160 (680)
T ss_dssp TTTTTTCTTCSEEECCSSCCCC-CCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred hhhhccCCCCCEEECCCCccCc-cChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccccc
Confidence 3356666666666666666665 443356666666666665 34555666666666666554
No 40
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=1.3e-14 Score=107.31 Aligned_cols=94 Identities=22% Similarity=0.273 Sum_probs=55.3
Q ss_pred CccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhh
Q 035976 90 FSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEG 169 (203)
Q Consensus 90 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~ 169 (203)
+..+..+++|++|++++|.+++..+. .+..+++|++|++++|.+++..+..+..+++|+.|++++|++++ +|...
T Consensus 45 ~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~ 119 (177)
T 2o6r_A 45 HGVFDKLTQLTKLSLSQNQIQSLPDG----VFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKS-VPDGI 119 (177)
T ss_dssp TTTTTTCTTCSEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTT
T ss_pred HHHhcCcccccEEECCCCcceEeChh----HccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceE-eCHHH
Confidence 34455666666666666666653332 34556666666666666665444445566666666666666665 55422
Q ss_pred hCCCCCCcEEEEecCCCCCCCEEEccCCCCCc
Q 035976 170 LSNLRNLQLLDLRLANLTNLKTLDLRDCGITT 201 (203)
Q Consensus 170 ~~~l~~L~~L~l~~~~l~~L~~L~L~~N~l~~ 201 (203)
+..+++|+.|+|++|.+++
T Consensus 120 -------------~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 120 -------------FDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp -------------TTTCTTCCEEECCSSCBCC
T ss_pred -------------hcCCcccCEEEecCCCeec
Confidence 3445666677777776654
No 41
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.61 E-value=4e-15 Score=125.11 Aligned_cols=108 Identities=27% Similarity=0.271 Sum_probs=96.3
Q ss_pred CCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchh
Q 035976 89 NFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIE 168 (203)
Q Consensus 89 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~ 168 (203)
.+..+..+++|++|++++|.+++..|. .+..+++|++|++++|.+++..|..+..+++|+.|++++|++++ +++.
T Consensus 291 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~ 365 (455)
T 3v47_A 291 LKSVFSHFTDLEQLTLAQNEINKIDDN----AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA-LGDQ 365 (455)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCE-ECTT
T ss_pred chhhcccCCCCCEEECCCCcccccChh----HhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccc-cChh
Confidence 367788999999999999999997676 88899999999999999998778889999999999999999998 5435
Q ss_pred hhCCCCCCcEEEEe-----------cCCCCCCCEEEccCCCCCc
Q 035976 169 GLSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGITT 201 (203)
Q Consensus 169 ~~~~l~~L~~L~l~-----------~~~l~~L~~L~L~~N~l~~ 201 (203)
.|..+++|++|+++ +..+++|+.|+|++|+|++
T Consensus 366 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 366 SFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence 89999999999998 5788999999999999875
No 42
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.61 E-value=2.2e-15 Score=113.64 Aligned_cols=105 Identities=21% Similarity=0.249 Sum_probs=88.8
Q ss_pred ccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCC-CCCCcchhh
Q 035976 91 SLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENN-IEGSRTIEG 169 (203)
Q Consensus 91 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~lp~~~ 169 (203)
..+..+++|++|++++|.+++..+. .+..+++|++|++++|.+++..|..+..+++|+.|++++|+ ++. +| .
T Consensus 82 ~~l~~l~~L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~--~ 154 (197)
T 4ezg_A 82 NPISGLSNLERLRIMGKDVTSDKIP----NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM--P 154 (197)
T ss_dssp GGGTTCTTCCEEEEECTTCBGGGSC----CCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG--G
T ss_pred hhhhcCCCCCEEEeECCccCcccCh----hhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH--h
Confidence 4678899999999999999886676 88899999999999999997788889999999999999998 766 76 5
Q ss_pred hCCCCCCcEEEEe---------cCCCCCCCEEEccCCCCCcC
Q 035976 170 LSNLRNLQLLDLR---------LANLTNLKTLDLRDCGITTI 202 (203)
Q Consensus 170 ~~~l~~L~~L~l~---------~~~l~~L~~L~L~~N~l~~i 202 (203)
+..+++|++|+++ +..+++|+.|++++|+|.+.
T Consensus 155 l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~i~~~ 196 (197)
T 4ezg_A 155 LKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGGK 196 (197)
T ss_dssp GGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC-----
T ss_pred hcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCcccCCc
Confidence 8899999999998 67788999999999998763
No 43
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.61 E-value=1.8e-15 Score=114.85 Aligned_cols=124 Identities=20% Similarity=0.205 Sum_probs=104.6
Q ss_pred CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCC
Q 035976 62 RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSI 141 (203)
Q Consensus 62 ~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~ 141 (203)
.+++.|+++++ .+.+. ++..|..+++|++|++++|.+++..+. .+..+++|++|++++|++++..
T Consensus 52 ~~L~~L~l~~n---~l~~~--------~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~ 116 (208)
T 2o6s_A 52 TSLTQLYLGGN---KLQSL--------PNGVFNKLTSLTYLNLSTNQLQSLPNG----VFDKLTQLKELALNTNQLQSLP 116 (208)
T ss_dssp TTCSEEECCSS---CCCCC--------CTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCC
T ss_pred ccCcEEECCCC---ccCcc--------ChhhcCCCCCcCEEECCCCcCCccCHh----HhcCccCCCEEEcCCCcCcccC
Confidence 45777777777 55433 456688999999999999999985444 5789999999999999999766
Q ss_pred hhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe----cCCCCCCCEEEccCCCCCc
Q 035976 142 LPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR----LANLTNLKTLDLRDCGITT 201 (203)
Q Consensus 142 p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~----~~~l~~L~~L~L~~N~l~~ 201 (203)
+..+..+++|+.|++++|++++ ++...+..+++|++|+++ ...+++|+.|+++.|++++
T Consensus 117 ~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 117 DGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSG 179 (208)
T ss_dssp TTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSCCBCCCTTTTHHHHHHHHHCTT
T ss_pred HhHhccCCcCCEEECCCCccce-eCHHHhccCCCccEEEecCCCeecCCCCHHHHHHHHHhCCc
Confidence 6678999999999999999998 776568999999999998 6678899999999998875
No 44
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.61 E-value=1.3e-14 Score=115.95 Aligned_cols=106 Identities=24% Similarity=0.161 Sum_probs=94.0
Q ss_pred CccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhh
Q 035976 90 FSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEG 169 (203)
Q Consensus 90 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~ 169 (203)
+..+..+++|++|++++|++++..+. .+..+++|++|++++|+++...+..|..+++|+.|++++|++++ +|...
T Consensus 93 ~~~~~~l~~L~~L~l~~N~l~~l~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~ 167 (290)
T 1p9a_G 93 PLLGQTLPALTVLDVSFNRLTSLPLG----ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGL 167 (290)
T ss_dssp CCCTTTCTTCCEEECCSSCCCCCCSS----TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC-CCTTT
T ss_pred chhhccCCCCCEEECCCCcCcccCHH----HHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc-cCHHH
Confidence 45678899999999999999995555 78999999999999999997766778899999999999999998 88767
Q ss_pred hCCCCCCcEEEEe----------cCCCCCCCEEEccCCCCC
Q 035976 170 LSNLRNLQLLDLR----------LANLTNLKTLDLRDCGIT 200 (203)
Q Consensus 170 ~~~l~~L~~L~l~----------~~~l~~L~~L~L~~N~l~ 200 (203)
|..+++|++|+++ +..+++|+.|+|++|.+.
T Consensus 168 ~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 168 LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred hcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 8899999999998 555678999999999875
No 45
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.61 E-value=8.2e-15 Score=112.48 Aligned_cols=119 Identities=21% Similarity=0.236 Sum_probs=99.6
Q ss_pred EEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhh
Q 035976 66 HLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYL 145 (203)
Q Consensus 66 ~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~ 145 (203)
.++++++ .+... |..+. ..+++|++++|.+++..+.. .+..+++|++|++++|.+++..+..|
T Consensus 15 ~l~~s~n---~l~~i---------P~~~~--~~~~~L~L~~N~l~~~~~~~---~~~~l~~L~~L~L~~N~i~~i~~~~~ 77 (220)
T 2v70_A 15 TVDCSNQ---KLNKI---------PEHIP--QYTAELRLNNNEFTVLEATG---IFKKLPQLRKINFSNNKITDIEEGAF 77 (220)
T ss_dssp EEECCSS---CCSSC---------CSCCC--TTCSEEECCSSCCCEECCCC---CGGGCTTCCEEECCSSCCCEECTTTT
T ss_pred EeEeCCC---CcccC---------ccCCC--CCCCEEEcCCCcCCccCchh---hhccCCCCCEEECCCCcCCEECHHHh
Confidence 6777777 55443 33332 35689999999999854431 47889999999999999997777789
Q ss_pred cCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe-----------cCCCCCCCEEEccCCCCCcC
Q 035976 146 NTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGITTI 202 (203)
Q Consensus 146 ~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~-----------~~~l~~L~~L~L~~N~l~~i 202 (203)
..+++|+.|++++|++++ ++...|..+++|++|+++ +..+++|+.|+|++|+|+++
T Consensus 78 ~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 144 (220)
T 2v70_A 78 EGASGVNEILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV 144 (220)
T ss_dssp TTCTTCCEEECCSSCCCC-CCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCB
T ss_pred CCCCCCCEEECCCCccCc-cCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEE
Confidence 999999999999999998 776679999999999998 77889999999999999887
No 46
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=7.3e-15 Score=108.76 Aligned_cols=66 Identities=24% Similarity=0.276 Sum_probs=39.4
Q ss_pred CCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcch
Q 035976 97 EELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTI 167 (203)
Q Consensus 97 ~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~ 167 (203)
++|++|++++|.+++..+. .+..+++|++|++++|.++...+..+..+++|+.|++++|++++ ++.
T Consensus 28 ~~l~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~ 93 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHG----VFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS-LPN 93 (177)
T ss_dssp TTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCT
T ss_pred CCCcEEEeCCCcccEeCHH----HhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccc-cCH
Confidence 4566666666666653333 45566666666666666664444445666666666666666665 443
No 47
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.61 E-value=2.8e-15 Score=113.00 Aligned_cols=121 Identities=21% Similarity=0.275 Sum_probs=101.8
Q ss_pred CeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCCh
Q 035976 63 RVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSIL 142 (203)
Q Consensus 63 ~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p 142 (203)
+++.++++++ .+... + .+..+++|++|++++|.++. + + .+..+++|++|++++|.+++..|
T Consensus 45 ~L~~L~l~~n---~i~~l---------~-~l~~l~~L~~L~l~~n~~~~-~-~----~l~~l~~L~~L~l~~n~l~~~~~ 105 (197)
T 4ezg_A 45 SLTYITLANI---NVTDL---------T-GIEYAHNIKDLTINNIHATN-Y-N----PISGLSNLERLRIMGKDVTSDKI 105 (197)
T ss_dssp TCCEEEEESS---CCSCC---------T-TGGGCTTCSEEEEESCCCSC-C-G----GGTTCTTCCEEEEECTTCBGGGS
T ss_pred CccEEeccCC---CccCh---------H-HHhcCCCCCEEEccCCCCCc-c-h----hhhcCCCCCEEEeECCccCcccC
Confidence 4667777766 54432 2 57888999999999997765 3 3 77889999999999999997778
Q ss_pred hhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe----------cCCCCCCCEEEccCCCCCcCC
Q 035976 143 PYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR----------LANLTNLKTLDLRDCGITTIQ 203 (203)
Q Consensus 143 ~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~----------~~~l~~L~~L~L~~N~l~~ip 203 (203)
..+..+++|+.|++++|++++..+. .+..+++|++|+++ +..+++|+.|++++|+|++++
T Consensus 106 ~~l~~l~~L~~L~Ls~n~i~~~~~~-~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~ 175 (197)
T 4ezg_A 106 PNLSGLTSLTLLDISHSAHDDSILT-KINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR 175 (197)
T ss_dssp CCCTTCTTCCEEECCSSBCBGGGHH-HHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCT
T ss_pred hhhcCCCCCCEEEecCCccCcHhHH-HHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChH
Confidence 8899999999999999999975554 89999999999998 567889999999999998764
No 48
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.60 E-value=8.2e-15 Score=127.44 Aligned_cols=124 Identities=22% Similarity=0.143 Sum_probs=95.9
Q ss_pred CeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCCh
Q 035976 63 RVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSIL 142 (203)
Q Consensus 63 ~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p 142 (203)
.++.++++++ .+.+. .+..|.++++|++|++++|.+++..|. .|..+++|++|++++|.+++..|
T Consensus 34 ~l~~L~Ls~n---~i~~~--------~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~ 98 (606)
T 3t6q_A 34 STECLEFSFN---VLPTI--------QNTTFSRLINLTFLDLTRCQIYWIHED----TFQSQHRLDTLVLTANPLIFMAE 98 (606)
T ss_dssp TCCEEECTTC---CCSEE--------CTTTSTTCTTCSEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCSEECT
T ss_pred cCcEEEccCC---ccCcC--------ChhHhccCccceEEECCCCccceeChh----hccCccccCeeeCCCCcccccCh
Confidence 5667777766 44432 466788888888888888888886666 78888888888888888887777
Q ss_pred hhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe-----------cCCCCCCCEEEccCCCCCcC
Q 035976 143 PYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGITTI 202 (203)
Q Consensus 143 ~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~-----------~~~l~~L~~L~L~~N~l~~i 202 (203)
..+..+++|++|++++|++++ ++...+..+++|++|+++ +..+++|+.|++++|+++++
T Consensus 99 ~~~~~l~~L~~L~L~~n~i~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 168 (606)
T 3t6q_A 99 TALSGPKALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYL 168 (606)
T ss_dssp TTTSSCTTCCEEECTTSCCSC-GGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEE
T ss_pred hhhcccccccEeeccccCccc-CCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccccc
Confidence 788888888888888888887 644467888888888887 33467788888888887765
No 49
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.60 E-value=6.2e-15 Score=133.32 Aligned_cols=135 Identities=23% Similarity=0.198 Sum_probs=91.0
Q ss_pred CCCccccCCCCCCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcc-cchhhhccCCCCCCCE
Q 035976 51 DWDGVKCNATTRRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFY-ENRAYDSNGSLKQLKI 129 (203)
Q Consensus 51 ~w~gv~c~~~~~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~~l~~l~~L~~ 129 (203)
.|..|.+ ...+++.|+|+++ .+.+. .+..|.++++|++|++++|.+.+.+ |. .+.++++|++
T Consensus 15 ~L~~vP~--lp~~l~~LdLs~N---~i~~i--------~~~~~~~l~~L~~LdLs~n~~~~~i~~~----~f~~L~~L~~ 77 (844)
T 3j0a_A 15 NLTQVPQ--VLNTTERLLLSFN---YIRTV--------TASSFPFLEQLQLLELGSQYTPLTIDKE----AFRNLPNLRI 77 (844)
T ss_dssp CSSCCCS--SCTTCCEEEEESC---CCCEE--------CSSSCSSCCSCSEEEECTTCCCCEECTT----TTSSCTTCCE
T ss_pred CCCCCCC--CCCCcCEEECCCC---cCCcc--------ChhHCcccccCeEEeCCCCCCccccCHH----HhcCCCCCCE
Confidence 5777777 3567888888887 55433 3556677777777777777555545 33 5667777777
Q ss_pred EEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcch-hhhCCCCCCcEEEEe------------cCCCCCCCEEEccC
Q 035976 130 LNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTI-EGLSNLRNLQLLDLR------------LANLTNLKTLDLRD 196 (203)
Q Consensus 130 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~-~~~~~l~~L~~L~l~------------~~~l~~L~~L~L~~ 196 (203)
|+|++|.+++..|..|..+++|+.|+|++|.+++.++. ..+..+++|++|+++ ++.+++|+.|+|++
T Consensus 78 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~ 157 (844)
T 3j0a_A 78 LDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS 157 (844)
T ss_dssp EECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEES
T ss_pred EECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCC
Confidence 77777777766677777777777777777777664443 126677777777776 45666777777777
Q ss_pred CCCCcC
Q 035976 197 CGITTI 202 (203)
Q Consensus 197 N~l~~i 202 (203)
|.|+++
T Consensus 158 N~i~~~ 163 (844)
T 3j0a_A 158 NQIFLV 163 (844)
T ss_dssp SCCCCC
T ss_pred CcCCee
Confidence 776543
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.60 E-value=7.5e-15 Score=119.01 Aligned_cols=134 Identities=25% Similarity=0.340 Sum_probs=101.1
Q ss_pred CCCCCccccCCCC---------CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhh
Q 035976 49 SNDWDGVKCNATT---------RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYD 119 (203)
Q Consensus 49 c~~w~gv~c~~~~---------~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 119 (203)
| .|..+.|.... ..++.++++++ .+. +. .+..|.++++|++|++++|.+++..|.
T Consensus 33 c-~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n---~i~-----~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~---- 96 (332)
T 2ft3_A 33 C-HLRVVQCSDLGLKAVPKEISPDTTLLDLQNN---DIS-----EL---RKDDFKGLQHLYALVLVNNKISKIHEK---- 96 (332)
T ss_dssp E-ETTEEECCSSCCSSCCSCCCTTCCEEECCSS---CCC-----EE---CTTTTTTCTTCCEEECCSSCCCEECGG----
T ss_pred c-cCCEEECCCCCccccCCCCCCCCeEEECCCC---cCC-----cc---CHhHhhCCCCCcEEECCCCccCccCHh----
Confidence 6 78888886421 24455555555 333 22 366789999999999999999986676
Q ss_pred ccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe-------------cCCC
Q 035976 120 SNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-------------LANL 186 (203)
Q Consensus 120 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~-------------~~~l 186 (203)
.+..+++|++|++++|.++ .+|..+. ++|+.|++++|++++ ++...|..+++|++|+++ +..+
T Consensus 97 ~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 172 (332)
T 2ft3_A 97 AFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRK-VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL 172 (332)
T ss_dssp GSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCC-CCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC
T ss_pred HhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCc-cCHhHhCCCccCCEEECCCCccccCCCCcccccCC
Confidence 8899999999999999998 5666554 789999999999987 776578899999999987 2333
Q ss_pred CCCCEEEccCCCCCcCC
Q 035976 187 TNLKTLDLRDCGITTIQ 203 (203)
Q Consensus 187 ~~L~~L~L~~N~l~~ip 203 (203)
+|+.|++++|+++++|
T Consensus 173 -~L~~L~l~~n~l~~l~ 188 (332)
T 2ft3_A 173 -KLNYLRISEAKLTGIP 188 (332)
T ss_dssp -CCSCCBCCSSBCSSCC
T ss_pred -ccCEEECcCCCCCccC
Confidence 6677777777766654
No 51
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.59 E-value=9e-15 Score=126.07 Aligned_cols=125 Identities=30% Similarity=0.319 Sum_probs=83.6
Q ss_pred CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCC
Q 035976 62 RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSI 141 (203)
Q Consensus 62 ~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~ 141 (203)
..++.|+++++ .+.+. .+..|.++++|++|++++|.+++..+. .+..+++|++|++++|.++...
T Consensus 28 ~~l~~L~Ls~n---~l~~~--------~~~~~~~l~~L~~L~Ls~n~i~~i~~~----~~~~l~~L~~L~L~~n~l~~~~ 92 (570)
T 2z63_A 28 FSTKNLDLSFN---PLRHL--------GSYSFFSFPELQVLDLSRCEIQTIEDG----AYQSLSHLSTLILTGNPIQSLA 92 (570)
T ss_dssp SSCCEEECCSC---CCCEE--------CTTTTTTCSSCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCEEC
T ss_pred ccccEEEccCC---ccCcc--------ChhHhhCCCCceEEECCCCcCCccCcc----cccCchhCCEEeCcCCcCCccC
Confidence 35677777776 44432 345667777777777777777764444 5667777777777777777655
Q ss_pred hhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe------------cCCCCCCCEEEccCCCCCcC
Q 035976 142 LPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR------------LANLTNLKTLDLRDCGITTI 202 (203)
Q Consensus 142 p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~------------~~~l~~L~~L~L~~N~l~~i 202 (203)
|..|..+++|++|++++|++++ ++...++.+++|++|+++ +..+++|++|++++|+++++
T Consensus 93 ~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 93 LGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp TTTTTTCTTCCEEECTTSCCCC-STTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred HhhhcCcccccccccccccccc-CCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee
Confidence 5667777777777777777776 554356777777777776 34456677777777776654
No 52
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.59 E-value=7.2e-15 Score=131.65 Aligned_cols=107 Identities=27% Similarity=0.286 Sum_probs=94.6
Q ss_pred CCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchh
Q 035976 89 NFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIE 168 (203)
Q Consensus 89 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~ 168 (203)
.+..+..+++|++|++++|.+++.+|. .+..+++|++|++++|++++.+|..+..+++|+.|++++|++++.+|.
T Consensus 434 ~p~~l~~l~~L~~L~L~~n~l~~~~p~----~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~- 508 (768)
T 3rgz_A 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQ----ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK- 508 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCG----GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG-
T ss_pred ccHHHhcCCCCCEEECCCCcccCcCCH----HHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCCh-
Confidence 367788889999999999999988887 888899999999999999988999999999999999999999987775
Q ss_pred hhCCCCCCcEEEEe-----------cCCCCCCCEEEccCCCCC
Q 035976 169 GLSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGIT 200 (203)
Q Consensus 169 ~~~~l~~L~~L~l~-----------~~~l~~L~~L~L~~N~l~ 200 (203)
.++.+++|++|+++ +..+++|+.|++++|+++
T Consensus 509 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 509 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp GGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred HHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence 78899999999997 678889999999999887
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.58 E-value=6.1e-15 Score=118.08 Aligned_cols=62 Identities=26% Similarity=0.265 Sum_probs=29.2
Q ss_pred ccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe
Q 035976 120 SNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR 182 (203)
Q Consensus 120 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~ 182 (203)
.+..+++|++|++++|.+++..|..+..+++|+.|++++|++++ ++...+..+++|++|+++
T Consensus 170 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~ 231 (306)
T 2z66_A 170 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCLNSLQVLDYS 231 (306)
T ss_dssp CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB-CCSGGGTTCTTCCEEECT
T ss_pred HHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc-cChhhccCcccCCEeECC
Confidence 34444444455554444444334444444555555555555444 332234444555555544
No 54
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.58 E-value=5.5e-15 Score=111.09 Aligned_cols=118 Identities=25% Similarity=0.316 Sum_probs=95.4
Q ss_pred CCCCCccccCCC---------CCCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhh
Q 035976 49 SNDWDGVKCNAT---------TRRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYD 119 (203)
Q Consensus 49 c~~w~gv~c~~~---------~~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 119 (203)
| .|..+.|... ...++.|+++++ .+.+. . ....+..+++|++|++++|.+++..|.
T Consensus 8 C-~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n---~i~~~-----~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~---- 72 (192)
T 1w8a_A 8 C-EGTTVDCTGRGLKEIPRDIPLHTTELLLNDN---ELGRI-----S--SDGLFGRLPHLVKLELKRNQLTGIEPN---- 72 (192)
T ss_dssp E-ETTEEECTTSCCSSCCSCCCTTCSEEECCSC---CCCSB-----C--CSCSGGGCTTCCEEECCSSCCCCBCTT----
T ss_pred E-CCCEEEcCCCCcCcCccCCCCCCCEEECCCC---cCCcc-----C--CccccccCCCCCEEECCCCCCCCcCHh----
Confidence 7 7888888642 124555655555 44332 2 123588999999999999999997777
Q ss_pred ccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe
Q 035976 120 SNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR 182 (203)
Q Consensus 120 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~ 182 (203)
.+..+++|++|++++|++++..+..|..+++|+.|++++|++++..| ..+..+++|++|+++
T Consensus 73 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~ 134 (192)
T 1w8a_A 73 AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP-GSFEHLNSLTSLNLA 134 (192)
T ss_dssp TTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECT-TSSTTCTTCCEEECT
T ss_pred HcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCH-HHhhcCCCCCEEEeC
Confidence 89999999999999999998777789999999999999999998445 589999999999997
No 55
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=6.7e-15 Score=105.91 Aligned_cols=116 Identities=28% Similarity=0.281 Sum_probs=91.1
Q ss_pred CCeeEEecCCccccccc-cCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCC
Q 035976 62 RRVMHLLLNDTAKFNFS-YNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDS 140 (203)
Q Consensus 62 ~~v~~l~l~~~~~l~l~-~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~ 140 (203)
.+++.++++++ .+. +. .+..+..+++|++|++++|.+++. . .+..+++|++|++++|.+++.
T Consensus 17 ~~l~~L~l~~n---~l~~~~--------~~~~~~~l~~L~~L~l~~n~l~~~--~----~~~~l~~L~~L~Ls~n~i~~~ 79 (149)
T 2je0_A 17 SDVKELVLDNS---RSNEGK--------LEGLTDEFEELEFLSTINVGLTSI--A----NLPKLNKLKKLELSDNRVSGG 79 (149)
T ss_dssp GGCSEEECTTC---BCBTTB--------CCSCCTTCTTCCEEECTTSCCCCC--T----TCCCCTTCCEEECCSSCCCSC
T ss_pred ccCeEEEccCC---cCChhH--------HHHHHhhcCCCcEEECcCCCCCCc--h----hhhcCCCCCEEECCCCcccch
Confidence 45778888888 665 22 256778899999999999999884 4 788899999999999999977
Q ss_pred ChhhhcCCCCCcEEeccCCCCCCCcch-hhhCCCCCCcEEEEe--------------cCCCCCCCEEEcc
Q 035976 141 ILPYLNTLISLTTLILRENNIEGSRTI-EGLSNLRNLQLLDLR--------------LANLTNLKTLDLR 195 (203)
Q Consensus 141 ~p~~~~~l~~L~~L~L~~N~l~~~lp~-~~~~~l~~L~~L~l~--------------~~~l~~L~~L~L~ 195 (203)
+|..+..+++|+.|++++|++++ ++. ..+..+++|++|+++ +..+++|+.|+++
T Consensus 80 ~~~~~~~l~~L~~L~ls~N~i~~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 80 LEVLAEKCPNLTHLNLSGNKIKD-LSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp THHHHHHCTTCCEEECTTSCCCS-HHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred HHHHhhhCCCCCEEECCCCcCCC-hHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 88888889999999999999988 541 367777777777776 3445667777665
No 56
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.58 E-value=6.3e-15 Score=114.11 Aligned_cols=106 Identities=16% Similarity=0.216 Sum_probs=63.1
Q ss_pred CccCCCCCCCCEEEccCCc-CCCcccchhhhccCCCCCCCEEEccC-CCCCCCChhhhcCCCCCcEEeccCCCCCCCcch
Q 035976 90 FSLFHPFEELQSLDLSLNA-FEGFYENRAYDSNGSLKQLKILNLEA-NHFNDSILPYLNTLISLTTLILRENNIEGSRTI 167 (203)
Q Consensus 90 ~~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~ 167 (203)
+..|..+++|++|++++|. ++...+. .+..+++|++|++++ |.++...+..|..+++|+.|++++|++++ +|.
T Consensus 48 ~~~~~~l~~L~~L~l~~n~~l~~i~~~----~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~ 122 (239)
T 2xwt_C 48 SHAFSNLPNISRIYVSIDVTLQQLESH----SFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD 122 (239)
T ss_dssp TTTTTTCTTCCEEEEECCSSCCEECTT----TEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC
T ss_pred HHHccCCCCCcEEeCCCCCCcceeCHh----HcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc
Confidence 4456666777777777775 6653333 455666667777766 66664444556666666666666666665 552
Q ss_pred hhhCCCCCCc---EEEEe------------cCCCCCCC-EEEccCCCCCcC
Q 035976 168 EGLSNLRNLQ---LLDLR------------LANLTNLK-TLDLRDCGITTI 202 (203)
Q Consensus 168 ~~~~~l~~L~---~L~l~------------~~~l~~L~-~L~L~~N~l~~i 202 (203)
+..+++|+ +|+++ +..+++|+ .|++++|+|+.+
T Consensus 123 --~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i 171 (239)
T 2xwt_C 123 --LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV 171 (239)
T ss_dssp --CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEE
T ss_pred --cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCccc
Confidence 55555555 55554 34455555 666666655544
No 57
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.57 E-value=1.4e-14 Score=125.77 Aligned_cols=101 Identities=28% Similarity=0.302 Sum_probs=92.0
Q ss_pred CCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCC
Q 035976 97 EELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNL 176 (203)
Q Consensus 97 ~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L 176 (203)
+.+++|+|++|.|++..+. .|..+++|++|+|++|++++..|..|..+++|++|+|++|++++ +|...|.++++|
T Consensus 52 ~~~~~LdLs~N~i~~l~~~----~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~-l~~~~f~~L~~L 126 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSY----SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSL 126 (635)
T ss_dssp TTCCEEECTTSCCCEECTT----TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECGGGGTTCTTC
T ss_pred cCCCEEEeeCCCCCCCCHH----HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC-CCHHHhcCCCCC
Confidence 4799999999999995555 78999999999999999997667789999999999999999998 887789999999
Q ss_pred cEEEEe-----------cCCCCCCCEEEccCCCCCcC
Q 035976 177 QLLDLR-----------LANLTNLKTLDLRDCGITTI 202 (203)
Q Consensus 177 ~~L~l~-----------~~~l~~L~~L~L~~N~l~~i 202 (203)
++|+++ ++.+++|++|+|++|+|+++
T Consensus 127 ~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~ 163 (635)
T 4g8a_A 127 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 163 (635)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC
T ss_pred CEEECCCCcCCCCChhhhhcCcccCeeccccCccccC
Confidence 999998 78899999999999999765
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.57 E-value=1.3e-14 Score=116.21 Aligned_cols=123 Identities=25% Similarity=0.352 Sum_probs=101.6
Q ss_pred cccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCC-CChhhhcCCCCC
Q 035976 73 AKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFND-SILPYLNTLISL 151 (203)
Q Consensus 73 ~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L 151 (203)
+.|+++++.+.+.. ....+..+++|++|++++|.+.+..+. .+..+++|++|++++|.+++ ..|..+..+++|
T Consensus 104 ~~L~l~~n~l~~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 177 (306)
T 2z66_A 104 EHLDFQHSNLKQMS--EFSVFLSLRNLIYLDISHTHTRVAFNG----IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177 (306)
T ss_dssp CEEECTTSEEESST--TTTTTTTCTTCCEEECTTSCCEECSTT----TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred CEEECCCCcccccc--cchhhhhccCCCEEECCCCcCCccchh----hcccCcCCCEEECCCCccccccchhHHhhCcCC
Confidence 33344444433332 125788999999999999999986676 78899999999999999986 578889999999
Q ss_pred cEEeccCCCCCCCcchhhhCCCCCCcEEEEe-----------cCCCCCCCEEEccCCCCCcC
Q 035976 152 TTLILRENNIEGSRTIEGLSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGITTI 202 (203)
Q Consensus 152 ~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~-----------~~~l~~L~~L~L~~N~l~~i 202 (203)
+.|++++|++++ +++..+..+++|++|+++ +..+++|+.|+|++|+|+++
T Consensus 178 ~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 238 (306)
T 2z66_A 178 TFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238 (306)
T ss_dssp CEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred CEEECCCCCcCC-cCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence 999999999998 644589999999999998 67789999999999999875
No 59
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=1.6e-14 Score=108.74 Aligned_cols=116 Identities=24% Similarity=0.257 Sum_probs=95.3
Q ss_pred CCCCCccccCCC---------CCCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhh
Q 035976 49 SNDWDGVKCNAT---------TRRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYD 119 (203)
Q Consensus 49 c~~w~gv~c~~~---------~~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 119 (203)
| .|..+.|... ...++.|+++++ .+... +..|..+++|++|++++|.+++..+.
T Consensus 10 C-~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n---~i~~i---------p~~~~~l~~L~~L~Ls~N~i~~i~~~---- 72 (193)
T 2wfh_A 10 C-LDTVVRCSNKGLKVLPKGIPRDVTELYLDGN---QFTLV---------PKELSNYKHLTLIDLSNNRISTLSNQ---- 72 (193)
T ss_dssp E-ETTEEECTTSCCSSCCSCCCTTCCEEECCSS---CCCSC---------CGGGGGCTTCCEEECCSSCCCCCCTT----
T ss_pred e-CCCEEEcCCCCCCcCCCCCCCCCCEEECCCC---cCchh---------HHHhhcccCCCEEECCCCcCCEeCHh----
Confidence 6 6777777541 124555555555 44322 46889999999999999999996555
Q ss_pred ccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe
Q 035976 120 SNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR 182 (203)
Q Consensus 120 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~ 182 (203)
.|..+++|++|+|++|.++...|..|..+++|+.|+|++|+++. +|...|..+++|+.|+++
T Consensus 73 ~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~ 134 (193)
T 2wfh_A 73 SFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIG 134 (193)
T ss_dssp TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTCCEEECC
T ss_pred HccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCe-eChhhhhcCccccEEEeC
Confidence 78999999999999999998888889999999999999999998 887679999999999997
No 60
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.57 E-value=1.7e-14 Score=122.26 Aligned_cols=107 Identities=23% Similarity=0.268 Sum_probs=57.8
Q ss_pred CccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhh
Q 035976 90 FSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEG 169 (203)
Q Consensus 90 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~ 169 (203)
+..|.++++|++|+|++|.++...+. .+..+++|++|++++|.++...|..+..+++|+.|++++|.+++ ++...
T Consensus 73 ~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~ 147 (477)
T 2id5_A 73 PGAFNNLFNLRTLGLRSNRLKLIPLG----VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY-ISHRA 147 (477)
T ss_dssp TTTTTTCTTCCEEECCSSCCCSCCTT----SSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCE-ECTTS
T ss_pred hhhhhCCccCCEEECCCCcCCccCcc----cccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccce-eChhh
Confidence 44555666666666666666552222 34555666666666666555445555555555555555555554 33234
Q ss_pred hCCCCCCcEEEEe-----------cCCCCCCCEEEccCCCCCc
Q 035976 170 LSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGITT 201 (203)
Q Consensus 170 ~~~l~~L~~L~l~-----------~~~l~~L~~L~L~~N~l~~ 201 (203)
|..+++|++|+++ +..+++|+.|+|++|.+++
T Consensus 148 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 148 FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp STTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred ccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence 5555555555554 3444555555555555443
No 61
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.56 E-value=2.8e-14 Score=117.98 Aligned_cols=121 Identities=21% Similarity=0.191 Sum_probs=92.7
Q ss_pred cccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCc
Q 035976 73 AKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLT 152 (203)
Q Consensus 73 ~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 152 (203)
+.|+++++.+.+. ++..|..+++|++|++++|.+++..|. .+..+++|++|++++|.++...+..+..+++|+
T Consensus 72 ~~L~L~~n~i~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 144 (390)
T 3o6n_A 72 ELLNLNDLQIEEI---DTYAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 144 (390)
T ss_dssp SEEECTTSCCCEE---CTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cEEECCCCccccc---ChhhccCCCCcCEEECCCCCCCcCCHH----HhcCCCCCCEEECCCCccCcCCHHHhcCCCCCc
Confidence 3344455544333 456889999999999999999996665 788999999999999999954444568899999
Q ss_pred EEeccCCCCCCCcchhhhCCCCCCcEEEEe--------cCCCCCCCEEEccCCCCCc
Q 035976 153 TLILRENNIEGSRTIEGLSNLRNLQLLDLR--------LANLTNLKTLDLRDCGITT 201 (203)
Q Consensus 153 ~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~--------~~~l~~L~~L~L~~N~l~~ 201 (203)
.|++++|++++ ++...+..+++|++|+++ +..+++|+.|++++|.+++
T Consensus 145 ~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 145 TLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp EEECCSSCCCB-CCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSE
T ss_pred EEECCCCccCc-cChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccc
Confidence 99999999998 655578999999999998 4455666666666665544
No 62
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.56 E-value=3.3e-14 Score=116.79 Aligned_cols=102 Identities=25% Similarity=0.221 Sum_probs=91.6
Q ss_pred CCCCEEEccCCcCCCcccchhhhccC-CCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCC
Q 035976 97 EELQSLDLSLNAFEGFYENRAYDSNG-SLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRN 175 (203)
Q Consensus 97 ~~L~~L~L~~N~l~~~~p~~~~~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~ 175 (203)
+.++.|+|++|.+++..+. .+. .+++|++|+|++|+++...+..|..+++|+.|+|++|+++. ++...|..+++
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~----~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~ 113 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAE----WTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT-LDEFLFSDLQA 113 (361)
T ss_dssp TTCSEEECCSSCCCEECTT----SSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTT
T ss_pred CCCCEEECCCCCCCccChh----hhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCc-CCHHHhCCCcC
Confidence 4589999999999995554 566 89999999999999997777789999999999999999998 77667999999
Q ss_pred CcEEEEe-----------cCCCCCCCEEEccCCCCCcCC
Q 035976 176 LQLLDLR-----------LANLTNLKTLDLRDCGITTIQ 203 (203)
Q Consensus 176 L~~L~l~-----------~~~l~~L~~L~L~~N~l~~ip 203 (203)
|++|+|+ +..+++|+.|+|++|+|+++|
T Consensus 114 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 152 (361)
T 2xot_A 114 LEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP 152 (361)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred CCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC
Confidence 9999998 788899999999999999876
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.56 E-value=2.9e-14 Score=120.28 Aligned_cols=89 Identities=24% Similarity=0.165 Sum_probs=51.6
Q ss_pred CccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhh
Q 035976 90 FSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEG 169 (203)
Q Consensus 90 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~ 169 (203)
+..|.++++|++|+|++|.++...+. .+..+++|++|++++|.++...+..|..+++|+.|++++|+..+.++...
T Consensus 116 ~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~ 191 (452)
T 3zyi_A 116 VGAFNGLASLNTLELFDNWLTVIPSG----AFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGA 191 (452)
T ss_dssp TTTTTTCTTCCEEECCSSCCSBCCTT----TSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTT
T ss_pred hhhccCcccCCEEECCCCcCCccChh----hhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhh
Confidence 56677777777777777777764333 56667777777777777764444445555555555555532222244334
Q ss_pred hCCCCCCcEEEEe
Q 035976 170 LSNLRNLQLLDLR 182 (203)
Q Consensus 170 ~~~l~~L~~L~l~ 182 (203)
|..+++|++|+++
T Consensus 192 ~~~l~~L~~L~L~ 204 (452)
T 3zyi_A 192 FEGLFNLKYLNLG 204 (452)
T ss_dssp TTTCTTCCEEECT
T ss_pred ccCCCCCCEEECC
Confidence 4444555554444
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.56 E-value=2.4e-14 Score=120.37 Aligned_cols=106 Identities=25% Similarity=0.251 Sum_probs=56.9
Q ss_pred CccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCC---------------------
Q 035976 90 FSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTL--------------------- 148 (203)
Q Consensus 90 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l--------------------- 148 (203)
+..|.++++|++|+|++|.++...+. .+..+++|++|++++|.++...+..|..+
T Consensus 105 ~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~ 180 (440)
T 3zyj_A 105 IGAFNGLANLNTLELFDNRLTTIPNG----AFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGA 180 (440)
T ss_dssp GGGGTTCSSCCEEECCSSCCSSCCTT----TSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTT
T ss_pred hhhccCCccCCEEECCCCcCCeeCHh----HhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcch
Confidence 44556666666666666666653332 45556666666666666554333344444
Q ss_pred ----CCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe-----------cCCCCCCCEEEccCCCCCcC
Q 035976 149 ----ISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGITTI 202 (203)
Q Consensus 149 ----~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~-----------~~~l~~L~~L~L~~N~l~~i 202 (203)
++|+.|++++|+++. +| .+..+++|++|+++ +..+++|+.|+|++|+|+++
T Consensus 181 ~~~l~~L~~L~L~~n~l~~-~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 246 (440)
T 3zyj_A 181 FEGLSNLRYLNLAMCNLRE-IP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI 246 (440)
T ss_dssp TTTCSSCCEEECTTSCCSS-CC--CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred hhcccccCeecCCCCcCcc-cc--ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEE
Confidence 445555555555444 44 24445555555554 45555566666666655543
No 65
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.56 E-value=1.7e-14 Score=113.89 Aligned_cols=107 Identities=26% Similarity=0.302 Sum_probs=51.8
Q ss_pred cCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCC-ChhhhcCCCCCcEEeccCCCCCCCcchhhh
Q 035976 92 LFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDS-ILPYLNTLISLTTLILRENNIEGSRTIEGL 170 (203)
Q Consensus 92 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~ 170 (203)
.+.++++|++|++++|.+++..+. .+..+++|++|++++|.++.. +|..+..+++|+.|++++|++++ ++...+
T Consensus 95 ~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~ 169 (276)
T 2z62_A 95 AFSGLSSLQKLVAVETNLASLENF----PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDL 169 (276)
T ss_dssp TTTTCTTCCEEECTTSCCCCSTTC----CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE-ECGGGG
T ss_pred hhcCCccccEEECCCCCccccCch----hcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc-CCHHHh
Confidence 344444444444444444443222 344455555555555555432 34455555555555555555554 332233
Q ss_pred CCCCCCc----EEEEe----------cCCCCCCCEEEccCCCCCcCC
Q 035976 171 SNLRNLQ----LLDLR----------LANLTNLKTLDLRDCGITTIQ 203 (203)
Q Consensus 171 ~~l~~L~----~L~l~----------~~~l~~L~~L~L~~N~l~~ip 203 (203)
..+++|+ .|+++ .....+|+.|+|++|+|+++|
T Consensus 170 ~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~ 216 (276)
T 2z62_A 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVP 216 (276)
T ss_dssp HHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCC
T ss_pred hhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecC
Confidence 3333333 34443 122236777777777776654
No 66
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.55 E-value=3e-14 Score=124.24 Aligned_cols=121 Identities=21% Similarity=0.191 Sum_probs=94.9
Q ss_pred cccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCc
Q 035976 73 AKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLT 152 (203)
Q Consensus 73 ~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 152 (203)
+.|+++++.+.+. ++..|..+++|++|+|++|.+++..|. .+..+++|++|++++|.++...+..|..+++|+
T Consensus 78 ~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 150 (597)
T 3oja_B 78 ELLNLNDLQIEEI---DTYAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 150 (597)
T ss_dssp SEEECTTSCCCEE---CTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cEEECCCCCCCCC---ChHHhcCCCCCCEEECCCCcCCCCCHH----HHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCC
Confidence 3445555554443 366889999999999999999996665 778999999999999999965555578999999
Q ss_pred EEeccCCCCCCCcchhhhCCCCCCcEEEEe--------cCCCCCCCEEEccCCCCCc
Q 035976 153 TLILRENNIEGSRTIEGLSNLRNLQLLDLR--------LANLTNLKTLDLRDCGITT 201 (203)
Q Consensus 153 ~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~--------~~~l~~L~~L~L~~N~l~~ 201 (203)
.|++++|.+++ +++..|..+++|++|+++ +..+++|+.|++++|.+++
T Consensus 151 ~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 151 TLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp EEECCSSCCCB-CCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSE
T ss_pred EEEeeCCcCCC-CChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccc
Confidence 99999999998 555579999999999998 4455666666666665554
No 67
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.55 E-value=1.5e-14 Score=104.02 Aligned_cols=101 Identities=27% Similarity=0.368 Sum_probs=90.5
Q ss_pred CCCCCEEEccCCcCC-CcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCC
Q 035976 96 FEELQSLDLSLNAFE-GFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLR 174 (203)
Q Consensus 96 l~~L~~L~L~~N~l~-~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~ 174 (203)
.++|+.|++++|.++ +.+|. .+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++.+|. .+..++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~----~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~ 88 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEG----LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEV-LAEKCP 88 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCS----CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHH-HHHHCT
T ss_pred CccCeEEEccCCcCChhHHHH----HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHH-HhhhCC
Confidence 478999999999998 66887 888999999999999999965 7789999999999999999986664 778899
Q ss_pred CCcEEEEe------------cCCCCCCCEEEccCCCCCcCC
Q 035976 175 NLQLLDLR------------LANLTNLKTLDLRDCGITTIQ 203 (203)
Q Consensus 175 ~L~~L~l~------------~~~l~~L~~L~L~~N~l~~ip 203 (203)
+|++|+++ +..+++|++|++++|+|+++|
T Consensus 89 ~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 129 (149)
T 2je0_A 89 NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129 (149)
T ss_dssp TCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGST
T ss_pred CCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchH
Confidence 99999998 677899999999999998875
No 68
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.55 E-value=1.2e-14 Score=126.46 Aligned_cols=108 Identities=28% Similarity=0.314 Sum_probs=61.9
Q ss_pred ccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCC-CChhhhcCCCCCcEEeccCCCCCCCcchhh
Q 035976 91 SLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFND-SILPYLNTLISLTTLILRENNIEGSRTIEG 169 (203)
Q Consensus 91 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~ 169 (203)
..+..+++|++|++++|.+++..|. .+..+++|++|++++|.+++ ..|..+..+++|+.|++++|++++ +++..
T Consensus 418 ~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~ 492 (606)
T 3vq2_A 418 SAFLSLEKLLYLDISYTNTKIDFDG----IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ-ISWGV 492 (606)
T ss_dssp TTTTTCTTCCEEECTTSCCEECCTT----TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE-ECTTT
T ss_pred hhhhccccCCEEECcCCCCCccchh----hhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCc-cChhh
Confidence 3455566666666666666654444 55556666666666666554 245555556666666666666655 33235
Q ss_pred hCCCCCCcEEEEe-----------cCCCCCCCEEEccCCCCCcCC
Q 035976 170 LSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGITTIQ 203 (203)
Q Consensus 170 ~~~l~~L~~L~l~-----------~~~l~~L~~L~L~~N~l~~ip 203 (203)
+..+++|++|+++ +..+++|+.|+|++|+|+.+|
T Consensus 493 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p 537 (606)
T 3vq2_A 493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSK 537 (606)
T ss_dssp TTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEE
T ss_pred hcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccC
Confidence 5566666666665 455556666666666655543
No 69
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.55 E-value=1.7e-14 Score=117.17 Aligned_cols=99 Identities=27% Similarity=0.322 Sum_probs=61.9
Q ss_pred CCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCC
Q 035976 94 HPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNL 173 (203)
Q Consensus 94 ~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l 173 (203)
.++++|++|++++|.++. +|. .+..+++|++|++++|.+++ +|+.+..+++|+.|++++|.+.+.+|. .+..+
T Consensus 180 ~~l~~L~~L~L~~n~l~~-lp~----~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~-~~~~l 252 (328)
T 4fcg_A 180 QGLVNLQSLRLEWTGIRS-LPA----SIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPP-IFGGR 252 (328)
T ss_dssp EESTTCCEEEEEEECCCC-CCG----GGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCC-CTTCC
T ss_pred ccCCCCCEEECcCCCcCc-chH----hhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHH-HhcCC
Confidence 346666666666666663 555 56666666666666666663 455566666666666666666665554 56666
Q ss_pred CCCcEEEEe-----------cCCCCCCCEEEccCCCC
Q 035976 174 RNLQLLDLR-----------LANLTNLKTLDLRDCGI 199 (203)
Q Consensus 174 ~~L~~L~l~-----------~~~l~~L~~L~L~~N~l 199 (203)
++|++|+++ +..+++|+.|+|++|++
T Consensus 253 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 253 APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289 (328)
T ss_dssp CCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTT
T ss_pred CCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCc
Confidence 666666665 45556666666666554
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.55 E-value=9.1e-15 Score=117.70 Aligned_cols=83 Identities=24% Similarity=0.234 Sum_probs=48.2
Q ss_pred CCCCCCCEEEccCCcCCCcccchhhhccCCC-----CCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCC--cc
Q 035976 94 HPFEELQSLDLSLNAFEGFYENRAYDSNGSL-----KQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGS--RT 166 (203)
Q Consensus 94 ~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l-----~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--lp 166 (203)
..+++|++|++++|.+++. |. .+..+ ++|++|++++|++++..|..+..+++|+.|++++|++.+. ++
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~----~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 192 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DA----WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SS----HHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred hcCCCccEEEccCCCCcch-hH----HHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence 6677777777777777764 44 33333 5666666666666655555666666666666666665442 12
Q ss_pred hhhh--CCCCCCcEEEEe
Q 035976 167 IEGL--SNLRNLQLLDLR 182 (203)
Q Consensus 167 ~~~~--~~l~~L~~L~l~ 182 (203)
. .+ ..+++|++|+++
T Consensus 193 ~-~~~~~~l~~L~~L~L~ 209 (312)
T 1wwl_A 193 S-ALCPLKFPTLQVLALR 209 (312)
T ss_dssp H-HSCTTSCTTCCEEECT
T ss_pred H-HHHhccCCCCCEEECC
Confidence 1 22 455555555554
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.55 E-value=7e-15 Score=118.39 Aligned_cols=110 Identities=21% Similarity=0.217 Sum_probs=59.4
Q ss_pred CccCCCCCCCCEEEccCCcCCCc--ccchhhhcc--CCCCCCCEEEccCCCCCC--CCh-hhhcCCCCCcEEeccCCCCC
Q 035976 90 FSLFHPFEELQSLDLSLNAFEGF--YENRAYDSN--GSLKQLKILNLEANHFND--SIL-PYLNTLISLTTLILRENNIE 162 (203)
Q Consensus 90 ~~~~~~l~~L~~L~L~~N~l~~~--~p~~~~~~l--~~l~~L~~L~L~~n~l~~--~~p-~~~~~l~~L~~L~L~~N~l~ 162 (203)
+..+..+++|++|++++|.+.+. ++. .+ ..+++|++|++++|++++ .++ ..+..+++|+.|++++|+++
T Consensus 166 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 241 (312)
T 1wwl_A 166 CEQVRVFPALSTLDLSDNPELGERGLIS----ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLR 241 (312)
T ss_dssp TTTCCCCSSCCEEECCSCTTCHHHHHHH----HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCC
T ss_pred HHHhccCCCCCEEECCCCCcCcchHHHH----HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCC
Confidence 45556666666666666665543 122 22 556666666666666652 111 22345566666666666666
Q ss_pred CCcchhhhCCCCCCcEEEEe---cCCC-----CCCCEEEccCCCCCcCC
Q 035976 163 GSRTIEGLSNLRNLQLLDLR---LANL-----TNLKTLDLRDCGITTIQ 203 (203)
Q Consensus 163 ~~lp~~~~~~l~~L~~L~l~---~~~l-----~~L~~L~L~~N~l~~ip 203 (203)
+..|...+..+++|++|+++ +..+ ++|+.|+|++|+|+++|
T Consensus 242 ~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~~L~~L~Ls~N~l~~~p 290 (312)
T 1wwl_A 242 DAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRNP 290 (312)
T ss_dssp SSCCCSCCCCCTTCCEEECTTSCCSSCCSSCCSEEEEEECCSSCCCSCC
T ss_pred cccchhhhhhcCCCCEEECCCCccChhhhhccCCceEEECCCCCCCCCh
Confidence 53322234455666666665 1111 45666666666666554
No 72
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.54 E-value=1.2e-13 Score=110.27 Aligned_cols=117 Identities=34% Similarity=0.359 Sum_probs=67.1
Q ss_pred CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCC
Q 035976 62 RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSI 141 (203)
Q Consensus 62 ~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~ 141 (203)
.+++.|+++++ .+.+. +. +..+++|++|++++|.+++ ++ .+..+++|++|++++|.+++.
T Consensus 68 ~~L~~L~L~~n---~l~~~---------~~-l~~l~~L~~L~l~~n~l~~-~~-----~l~~l~~L~~L~L~~n~i~~~- 127 (291)
T 1h6t_A 68 PNVTKLFLNGN---KLTDI---------KP-LANLKNLGWLFLDENKVKD-LS-----SLKDLKKLKSLSLEHNGISDI- 127 (291)
T ss_dssp TTCCEEECCSS---CCCCC---------GG-GTTCTTCCEEECCSSCCCC-GG-----GGTTCTTCCEEECTTSCCCCC-
T ss_pred CCCCEEEccCC---ccCCC---------cc-cccCCCCCEEECCCCcCCC-Ch-----hhccCCCCCEEECCCCcCCCC-
Confidence 45677777766 44432 11 5566666666666666665 33 455566666666666666532
Q ss_pred hhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe---------cCCCCCCCEEEccCCCCCcC
Q 035976 142 LPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR---------LANLTNLKTLDLRDCGITTI 202 (203)
Q Consensus 142 p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~---------~~~l~~L~~L~L~~N~l~~i 202 (203)
+.+..+++|+.|++++|++++ ++ .+..+++|++|+++ +..+++|+.|++++|+|+.+
T Consensus 128 -~~l~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~l 193 (291)
T 1h6t_A 128 -NGLVHLPQLESLYLGNNKITD-IT--VLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL 193 (291)
T ss_dssp -GGGGGCTTCCEEECCSSCCCC-CG--GGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBC
T ss_pred -hhhcCCCCCCEEEccCCcCCc-ch--hhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCCC
Confidence 345556666666666666655 42 45556666666655 44555566666666655544
No 73
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.53 E-value=1.5e-13 Score=110.51 Aligned_cols=99 Identities=26% Similarity=0.409 Sum_probs=55.0
Q ss_pred CCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCC
Q 035976 93 FHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSN 172 (203)
Q Consensus 93 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~ 172 (203)
+..+++|++|++++|.+++ ++ .+..+++|++|++++|.+++. +. +..+++|+.|++++|++++ ++. +..
T Consensus 103 ~~~l~~L~~L~l~~n~l~~-~~-----~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~~--l~~ 171 (308)
T 1h6u_A 103 IAGLQSIKTLDLTSTQITD-VT-----PLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSD-LTP--LAN 171 (308)
T ss_dssp GTTCTTCCEEECTTSCCCC-CG-----GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCC-CGG--GTT
T ss_pred hcCCCCCCEEECCCCCCCC-ch-----hhcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCC-Chh--hcC
Confidence 4445555555555555554 22 344555555555555555532 22 5555666666666666655 442 556
Q ss_pred CCCCcEEEEe---------cCCCCCCCEEEccCCCCCcC
Q 035976 173 LRNLQLLDLR---------LANLTNLKTLDLRDCGITTI 202 (203)
Q Consensus 173 l~~L~~L~l~---------~~~l~~L~~L~L~~N~l~~i 202 (203)
+++|++|+++ +..+++|+.|+|++|+|+++
T Consensus 172 l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~ 210 (308)
T 1h6u_A 172 LSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDV 210 (308)
T ss_dssp CTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBC
T ss_pred CCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccCcc
Confidence 6666666665 44555666666666666554
No 74
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.53 E-value=2.1e-13 Score=109.72 Aligned_cols=99 Identities=33% Similarity=0.488 Sum_probs=59.9
Q ss_pred CCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCC
Q 035976 93 FHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSN 172 (203)
Q Consensus 93 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~ 172 (203)
+..+++|++|++++|.+++ ++ .+..+++|++|++++|.+++ ++. +..+++|+.|++++|++++ ++. +..
T Consensus 81 ~~~l~~L~~L~L~~n~l~~-~~-----~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~--l~~ 149 (308)
T 1h6u_A 81 LKNLTKITELELSGNPLKN-VS-----AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITN-ISP--LAG 149 (308)
T ss_dssp GTTCCSCCEEECCSCCCSC-CG-----GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG--GGG
T ss_pred HccCCCCCEEEccCCcCCC-ch-----hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCc-Ccc--ccC
Confidence 5566666666666666665 32 45556666666666666663 222 5666666666666666665 442 556
Q ss_pred CCCCcEEEEe---------cCCCCCCCEEEccCCCCCcC
Q 035976 173 LRNLQLLDLR---------LANLTNLKTLDLRDCGITTI 202 (203)
Q Consensus 173 l~~L~~L~l~---------~~~l~~L~~L~L~~N~l~~i 202 (203)
+++|++|+++ +..+++|+.|++++|+|+++
T Consensus 150 l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~ 188 (308)
T 1h6u_A 150 LTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDI 188 (308)
T ss_dssp CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC
T ss_pred CCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcC
Confidence 6666666665 45556666666666666554
No 75
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.52 E-value=1.1e-13 Score=118.25 Aligned_cols=70 Identities=20% Similarity=0.194 Sum_probs=38.5
Q ss_pred CccCCCCCCCCEEEccCCcCCC--cccchhhhccCCCCCCCEEEccCCCCCCCChhh-hcCCCCCcEEeccCCCCCC
Q 035976 90 FSLFHPFEELQSLDLSLNAFEG--FYENRAYDSNGSLKQLKILNLEANHFNDSILPY-LNTLISLTTLILRENNIEG 163 (203)
Q Consensus 90 ~~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~N~l~~ 163 (203)
+..+..+++|++|++++|.+++ .+|. .+..+++|++|++++|.+++.+|.. +..+++|+.|++++|++++
T Consensus 341 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~----~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~ 413 (520)
T 2z7x_B 341 FENCGHLTELETLILQMNQLKELSKIAE----MTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413 (520)
T ss_dssp TTTCCCCSSCCEEECCSSCCCBHHHHHH----HHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCG
T ss_pred hhhhccCCCCCEEEccCCccCccccchH----HHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCc
Confidence 4455666666666666666665 2333 4556666666666666666534432 4444445555555554443
No 76
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.52 E-value=3.3e-14 Score=104.26 Aligned_cols=102 Identities=29% Similarity=0.334 Sum_probs=90.3
Q ss_pred CCCCCCEEEccCCcCC-CcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCC
Q 035976 95 PFEELQSLDLSLNAFE-GFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNL 173 (203)
Q Consensus 95 ~l~~L~~L~L~~N~l~-~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l 173 (203)
..++|++|++++|.++ +.+|. .+..+++|++|++++|.+++. ..+..+++|+.|++++|++++.+|. .+..+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~----~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l 94 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEG----LTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDM-LAEKL 94 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSS----CCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCH-HHHHC
T ss_pred CcccCCEEECCCCCCChhhHHH----HHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHH-HHhhC
Confidence 3478999999999998 56887 778899999999999999965 7889999999999999999986664 77789
Q ss_pred CCCcEEEEe------------cCCCCCCCEEEccCCCCCcCC
Q 035976 174 RNLQLLDLR------------LANLTNLKTLDLRDCGITTIQ 203 (203)
Q Consensus 174 ~~L~~L~l~------------~~~l~~L~~L~L~~N~l~~ip 203 (203)
++|++|+++ +..+++|+.|++++|+|+++|
T Consensus 95 ~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 136 (168)
T 2ell_A 95 PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN 136 (168)
T ss_dssp TTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTST
T ss_pred CCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchH
Confidence 999999998 567889999999999998875
No 77
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.52 E-value=3e-14 Score=116.40 Aligned_cols=108 Identities=21% Similarity=0.257 Sum_probs=81.8
Q ss_pred CCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChh--hhcCCCCCcEEeccCCC-CCCCc
Q 035976 89 NFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILP--YLNTLISLTTLILRENN-IEGSR 165 (203)
Q Consensus 89 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~N~-l~~~l 165 (203)
.+..|.++++|++|++++|.+++ +|.. .+..+++|++|++++|+++. +|. .+..+++|+.|++++|. ++. +
T Consensus 92 ~~~~~~~l~~L~~L~Ls~n~l~~-~~~~---~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~-~ 165 (353)
T 2z80_A 92 EEDSFSSLGSLEHLDLSYNYLSN-LSSS---WFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTK-I 165 (353)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSS-CCHH---HHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCE-E
T ss_pred CHhhcCCCCCCCEEECCCCcCCc-CCHh---HhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCCccccc-c
Confidence 35678889999999999999988 4441 47888999999999998884 444 67888889999998884 555 6
Q ss_pred chhhhCCCCCCcEEEEe-----------cCCCCCCCEEEccCCCCCcC
Q 035976 166 TIEGLSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGITTI 202 (203)
Q Consensus 166 p~~~~~~l~~L~~L~l~-----------~~~l~~L~~L~L~~N~l~~i 202 (203)
+...+..+++|++|+++ +..+++|++|++++|+++.+
T Consensus 166 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 213 (353)
T 2z80_A 166 QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILL 213 (353)
T ss_dssp CTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTH
T ss_pred CHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccc
Confidence 54578888888888887 55566666777766666543
No 78
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.52 E-value=1.1e-13 Score=111.92 Aligned_cols=106 Identities=22% Similarity=0.237 Sum_probs=68.8
Q ss_pred CccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhh
Q 035976 90 FSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEG 169 (203)
Q Consensus 90 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~ 169 (203)
+..+..+++|++|++++|.++. +|. .+ .++|++|++++|.+++..|..+..+++|+.|++++|++++ ++...
T Consensus 164 ~~~~~~l~~L~~L~l~~n~l~~-l~~----~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~ 235 (330)
T 1xku_A 164 NGAFQGMKKLSYIRIADTNITT-IPQ----GL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA-VDNGS 235 (330)
T ss_dssp TTGGGGCTTCCEEECCSSCCCS-CCS----SC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE-ECTTT
T ss_pred hhhccCCCCcCEEECCCCcccc-CCc----cc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce-eChhh
Confidence 4455666677777777766665 444 32 2566677777777666556666777777777777777766 44335
Q ss_pred hCCCCCCcEEEEe----------cCCCCCCCEEEccCCCCCcCC
Q 035976 170 LSNLRNLQLLDLR----------LANLTNLKTLDLRDCGITTIQ 203 (203)
Q Consensus 170 ~~~l~~L~~L~l~----------~~~l~~L~~L~L~~N~l~~ip 203 (203)
+..+++|++|+++ +..+++|+.|++++|+|+++|
T Consensus 236 ~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~ 279 (330)
T 1xku_A 236 LANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIG 279 (330)
T ss_dssp GGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCC
T ss_pred ccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccC
Confidence 6667777777776 455666777777777776653
No 79
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.51 E-value=1.4e-13 Score=101.54 Aligned_cols=98 Identities=20% Similarity=0.162 Sum_probs=77.0
Q ss_pred eEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhh
Q 035976 65 MHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPY 144 (203)
Q Consensus 65 ~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~ 144 (203)
+.++++++ .+... |..+ .++|++|+|++|.+++..|. .+..+++|++|+|++|++++..+..
T Consensus 12 ~~l~~s~n---~l~~i---------p~~~--~~~l~~L~L~~N~i~~~~~~----~~~~l~~L~~L~Ls~N~l~~l~~~~ 73 (170)
T 3g39_A 12 TTVDCSGK---SLASV---------PTGI--PTTTQVLYLYDNQITKLEPG----VFDRLTQLTRLDLDNNQLTVLPAGV 73 (170)
T ss_dssp TEEECTTS---CCSSC---------CSCC--CTTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCCTTT
T ss_pred CEEEeCCC---CcCcc---------CccC--CCCCcEEEcCCCcCCccChh----hhcCcccCCEEECCCCCcCccChhh
Confidence 56777777 55543 3333 37899999999999996676 8899999999999999999766667
Q ss_pred hcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEE
Q 035976 145 LNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDL 181 (203)
Q Consensus 145 ~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l 181 (203)
|..+++|+.|+|++|++++ ++...|..+++|++|++
T Consensus 74 f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 74 FDKLTQLTQLSLNDNQLKS-IPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEEC
T ss_pred ccCCCCCCEEECCCCccCE-eCHHHhcCCCCCCEEEe
Confidence 8999999999999999998 77645555555444444
No 80
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.51 E-value=1.7e-13 Score=101.47 Aligned_cols=99 Identities=18% Similarity=0.160 Sum_probs=77.3
Q ss_pred eEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhh
Q 035976 65 MHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPY 144 (203)
Q Consensus 65 ~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~ 144 (203)
+.++++++ .+... |..+. ++|++|+|++|.+++..|. .+..+++|++|+|++|++++..+..
T Consensus 15 ~~l~~~~n---~l~~i---------P~~~~--~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~i~~~~ 76 (174)
T 2r9u_A 15 TLVNCQNI---RLASV---------PAGIP--TDKQRLWLNNNQITKLEPG----VFDHLVNLQQLYFNSNKLTAIPTGV 76 (174)
T ss_dssp SEEECCSS---CCSSC---------CSCCC--TTCSEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred cEEEeCCC---CCCcc---------CCCcC--CCCcEEEeCCCCccccCHH----HhcCCcCCCEEECCCCCCCccChhH
Confidence 56777777 55443 33333 7899999999999996676 8899999999999999999765556
Q ss_pred hcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe
Q 035976 145 LNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR 182 (203)
Q Consensus 145 ~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~ 182 (203)
|..+++|+.|+|++|++++ +|...|..+++|++|+++
T Consensus 77 ~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 77 FDKLTQLTQLDLNDNHLKS-IPRGAFDNLKSLTHIYLY 113 (174)
T ss_dssp TTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCSEEECC
T ss_pred hCCcchhhEEECCCCccce-eCHHHhccccCCCEEEeC
Confidence 7899999999999999998 776446665555555443
No 81
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.50 E-value=1e-13 Score=120.48 Aligned_cols=110 Identities=22% Similarity=0.234 Sum_probs=96.0
Q ss_pred CCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchh
Q 035976 89 NFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIE 168 (203)
Q Consensus 89 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~ 168 (203)
.+..|.++++|++|++++|.+++..|. .+..+++|++|++++|.+++..|..+..+++|++|++++|++++ ++..
T Consensus 73 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~ 147 (606)
T 3t6q_A 73 HEDTFQSQHRLDTLVLTANPLIFMAET----ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS-IKLP 147 (606)
T ss_dssp CTTTTTTCTTCCEEECTTCCCSEECTT----TTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCC-CCCC
T ss_pred ChhhccCccccCeeeCCCCcccccChh----hhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccc-cCcc
Confidence 477899999999999999999997777 89999999999999999997667889999999999999999998 5322
Q ss_pred hhCCCCCCcEEEEe-----------cCCCCCCC--EEEccCCCCCcCC
Q 035976 169 GLSNLRNLQLLDLR-----------LANLTNLK--TLDLRDCGITTIQ 203 (203)
Q Consensus 169 ~~~~l~~L~~L~l~-----------~~~l~~L~--~L~L~~N~l~~ip 203 (203)
.+..+++|++|+++ +..+++|+ .|++++|++++++
T Consensus 148 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~ 195 (606)
T 3t6q_A 148 KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIE 195 (606)
T ss_dssp TTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEEC
T ss_pred cccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccC
Confidence 46669999999998 67788888 8999999988764
No 82
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.50 E-value=1.3e-14 Score=127.44 Aligned_cols=88 Identities=11% Similarity=0.195 Sum_probs=65.8
Q ss_pred CccCC--CCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCC-CCC-CChhhhcCC------CCCcEEeccCC
Q 035976 90 FSLFH--PFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANH-FND-SILPYLNTL------ISLTTLILREN 159 (203)
Q Consensus 90 ~~~~~--~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~-l~~-~~p~~~~~l------~~L~~L~L~~N 159 (203)
|..+. ++++|++|++++|.+.+.+|. .+..+++|++|++++|+ +++ .+|..+..+ ++|+.|++++|
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n 315 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPT----FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCSSCCT----TTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS
T ss_pred chhhhhcccCCCCEEEecCCcCCccChH----HHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC
Confidence 56666 788888888888888887787 77888888888888887 776 677766665 77777777777
Q ss_pred CCCCCcch-hhhCCCCCCcEEEEe
Q 035976 160 NIEGSRTI-EGLSNLRNLQLLDLR 182 (203)
Q Consensus 160 ~l~~~lp~-~~~~~l~~L~~L~l~ 182 (203)
+++. +|. ..+..+++|++|+++
T Consensus 316 ~l~~-ip~~~~l~~l~~L~~L~L~ 338 (636)
T 4eco_A 316 NLKT-FPVETSLQKMKKLGMLECL 338 (636)
T ss_dssp CCSS-CCCHHHHTTCTTCCEEECC
T ss_pred cCCc-cCchhhhccCCCCCEEeCc
Confidence 7774 763 257777777777765
No 83
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.50 E-value=5.3e-14 Score=115.01 Aligned_cols=106 Identities=18% Similarity=0.218 Sum_probs=64.0
Q ss_pred CCCCCccccCCCCCCeeEE--ec-CCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCC
Q 035976 49 SNDWDGVKCNATTRRVMHL--LL-NDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLK 125 (203)
Q Consensus 49 c~~w~gv~c~~~~~~v~~l--~l-~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~ 125 (203)
| .+..|.|.+. +++++ ++ .+.+.|++++|.+... ++..|.++++|++|+|++|.+.+.+|.. .|.+++
T Consensus 9 C-~~~~v~C~~~--~Lt~iP~~l~~~l~~L~Ls~N~i~~i---~~~~f~~l~~L~~L~Ls~N~i~~~i~~~---~f~~L~ 79 (350)
T 4ay9_X 9 C-SNRVFLCQES--KVTEIPSDLPRNAIELRFVLTKLRVI---QKGAFSGFGDLEKIEISQNDVLEVIEAD---VFSNLP 79 (350)
T ss_dssp E-ETTEEEEEST--TCCSCCTTCCTTCSEEEEESCCCSEE---CTTSSTTCTTCCEEEEECCTTCCEECTT---SBCSCT
T ss_pred e-eCCEEEecCC--CCCccCcCcCCCCCEEEccCCcCCCc---CHHHHcCCCCCCEEECcCCCCCCccChh---Hhhcch
Confidence 7 7888888642 11111 01 1223334444444332 4677899999999999999987766652 445566
Q ss_pred CCCE-EEccCCCCCCCChhhhcCCCCCcEEeccCCCCCC
Q 035976 126 QLKI-LNLEANHFNDSILPYLNTLISLTTLILRENNIEG 163 (203)
Q Consensus 126 ~L~~-L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 163 (203)
+++. +.+..|+++...|..|..+++|+.|++++|+++.
T Consensus 80 ~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~ 118 (350)
T 4ay9_X 80 KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH 118 (350)
T ss_dssp TCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSS
T ss_pred hhhhhhcccCCcccccCchhhhhcccccccccccccccc
Confidence 6554 4445566665555566666666666666666665
No 84
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.49 E-value=2.9e-14 Score=129.10 Aligned_cols=109 Identities=19% Similarity=0.200 Sum_probs=78.2
Q ss_pred CccCC--CCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCC-CCC-CChhhhcCCC-------CCcEEeccC
Q 035976 90 FSLFH--PFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANH-FND-SILPYLNTLI-------SLTTLILRE 158 (203)
Q Consensus 90 ~~~~~--~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~-l~~-~~p~~~~~l~-------~L~~L~L~~ 158 (203)
|..++ ++++|++|+|++|.+.+.+|. .+..+++|++|++++|+ +++ .+|..+..++ +|+.|++++
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~----~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~ 557 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPD----FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY 557 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCG----GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChH----HHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC
Confidence 55655 888888888888888887887 77888888888888887 776 6676555444 777777777
Q ss_pred CCCCCCcch-hhhCCCCCCcEEEEe---------cCCCCCCCEEEccCCCCCcCC
Q 035976 159 NNIEGSRTI-EGLSNLRNLQLLDLR---------LANLTNLKTLDLRDCGITTIQ 203 (203)
Q Consensus 159 N~l~~~lp~-~~~~~l~~L~~L~l~---------~~~l~~L~~L~L~~N~l~~ip 203 (203)
|+++. +|. ..+..+++|+.|+++ ++.+++|+.|+|++|+|+.+|
T Consensus 558 N~L~~-ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp 611 (876)
T 4ecn_A 558 NNLEE-FPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIP 611 (876)
T ss_dssp SCCCB-CCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCC
T ss_pred CcCCc-cCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccch
Confidence 77774 763 257777777777776 455566666667666666554
No 85
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.49 E-value=1.2e-13 Score=121.76 Aligned_cols=126 Identities=21% Similarity=0.191 Sum_probs=100.0
Q ss_pred CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCC
Q 035976 62 RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSI 141 (203)
Q Consensus 62 ~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~ 141 (203)
.+++.|+++++ .+.+. .+..+.++++|++|++++|.++...+. .+..+++|++|++++|.+++..
T Consensus 49 ~~L~~L~Ls~n---~l~~~--------~~~~~~~l~~L~~L~L~~n~l~~l~~~----~~~~l~~L~~L~L~~n~l~~~~ 113 (680)
T 1ziw_A 49 SQLTSLDVGFN---TISKL--------EPELCQKLPMLKVLNLQHNELSQLSDK----TFAFCTNLTELHLMSNSIQKIK 113 (680)
T ss_dssp TTCSEEECCSS---CCCCC--------CTTHHHHCTTCCEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCC
T ss_pred CcCcEEECCCC---ccCcc--------CHHHHhcccCcCEEECCCCccCccChh----hhccCCCCCEEECCCCccCccC
Confidence 35667777666 44433 467788899999999999999984333 5888999999999999998776
Q ss_pred hhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe-------------cCCCCCCCEEEccCCCCCcCC
Q 035976 142 LPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-------------LANLTNLKTLDLRDCGITTIQ 203 (203)
Q Consensus 142 p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~-------------~~~l~~L~~L~L~~N~l~~ip 203 (203)
|..|..+++|++|++++|.+++ ++...+..+++|++|+++ ...+++|+.|++++|++++++
T Consensus 114 ~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 187 (680)
T 1ziw_A 114 NNPFVKQKNLITLDLSHNGLSS-TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFS 187 (680)
T ss_dssp SCTTTTCTTCCEEECCSSCCSC-CCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBC
T ss_pred hhHccccCCCCEEECCCCcccc-cCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccC
Confidence 7788999999999999999988 443478899999999987 224578999999999887753
No 86
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.49 E-value=3.5e-13 Score=116.50 Aligned_cols=124 Identities=21% Similarity=0.283 Sum_probs=67.7
Q ss_pred CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCc--ccchhhhccCCCCCCCEEEccCCCCCC
Q 035976 62 RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGF--YENRAYDSNGSLKQLKILNLEANHFND 139 (203)
Q Consensus 62 ~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~p~~~~~~l~~l~~L~~L~L~~n~l~~ 139 (203)
..++.++++++ .+.+. .+..+..+++|++|++++|.+++. +|. .+..+++|++|++++|.+++
T Consensus 353 ~~L~~L~l~~n---~l~~~--------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~----~~~~l~~L~~L~l~~N~l~~ 417 (562)
T 3a79_B 353 SSFTFLNFTQN---VFTDS--------VFQGCSTLKRLQTLILQRNGLKNFFKVAL----MTKNMSSLETLDVSLNSLNS 417 (562)
T ss_dssp CCCCEEECCSS---CCCTT--------TTTTCCSCSSCCEEECCSSCCCBTTHHHH----TTTTCTTCCEEECTTSCCBS
T ss_pred CCceEEECCCC---ccccc--------hhhhhcccCCCCEEECCCCCcCCcccchh----hhcCCCCCCEEECCCCcCCC
Confidence 44566666665 44332 245566667777777777776652 223 45666667777777766665
Q ss_pred CChh-hhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe----------cCCCCCCCEEEccCCCCCcCC
Q 035976 140 SILP-YLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR----------LANLTNLKTLDLRDCGITTIQ 203 (203)
Q Consensus 140 ~~p~-~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~----------~~~l~~L~~L~L~~N~l~~ip 203 (203)
.+|. .+..+++|+.|++++|++++.+|. .+. ++|++|+++ +..+++|+.|+|++|+|+.+|
T Consensus 418 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~ 489 (562)
T 3a79_B 418 HAYDRTCAWAESILVLNLSSNMLTGSVFR-CLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVP 489 (562)
T ss_dssp CCSSCCCCCCTTCCEEECCSSCCCGGGGS-SCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCC
T ss_pred ccChhhhcCcccCCEEECCCCCCCcchhh-hhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCC
Confidence 3443 345555566666666655542221 111 455555554 234455555555555555543
No 87
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.49 E-value=7.6e-14 Score=119.91 Aligned_cols=126 Identities=24% Similarity=0.339 Sum_probs=92.5
Q ss_pred CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCC-C
Q 035976 62 RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFND-S 140 (203)
Q Consensus 62 ~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~-~ 140 (203)
.+++.++++++ .+.+. .+..|..+++|++|++++|.+++..|. .+..+++|++|++++|.+++ .
T Consensus 50 ~~L~~L~Ls~n---~i~~~--------~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~ 114 (549)
T 2z81_A 50 ANLQVLILKSS---RINTI--------EGDAFYSLGSLEHLDLSDNHLSSLSSS----WFGPLSSLKYLNLMGNPYQTLG 114 (549)
T ss_dssp TTCCEEECTTS---CCCEE--------CTTTTTTCTTCCEEECTTSCCCSCCHH----HHTTCTTCCEEECTTCCCSSSC
T ss_pred CcccEEECCCC---CcCcc--------ChhhccccccCCEEECCCCccCccCHH----HhccCCCCcEEECCCCcccccc
Confidence 35666666666 44432 356788888999999999998885554 58888889999999888875 3
Q ss_pred ChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe-----------c------------------------CC
Q 035976 141 ILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-----------L------------------------AN 185 (203)
Q Consensus 141 ~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~-----------~------------------------~~ 185 (203)
.|..+..+++|+.|++++|.+.+.+|...+..+++|++|+++ + ..
T Consensus 115 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 194 (549)
T 2z81_A 115 VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADI 194 (549)
T ss_dssp SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHS
T ss_pred hhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhh
Confidence 566778888888888888874444665567778888888776 2 23
Q ss_pred CCCCCEEEccCCCCCcC
Q 035976 186 LTNLKTLDLRDCGITTI 202 (203)
Q Consensus 186 l~~L~~L~L~~N~l~~i 202 (203)
+++|+.|++++|+++++
T Consensus 195 l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 195 LSSVRYLELRDTNLARF 211 (549)
T ss_dssp TTTBSEEEEESCBCTTC
T ss_pred cccccEEEccCCccccc
Confidence 66778888888877764
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.48 E-value=6.3e-14 Score=108.44 Aligned_cols=104 Identities=15% Similarity=0.186 Sum_probs=52.3
Q ss_pred cCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCC---EEEccCC-CCCCCChhhhcCCCCCc-EEeccCCCCCCCcc
Q 035976 92 LFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLK---ILNLEAN-HFNDSILPYLNTLISLT-TLILRENNIEGSRT 166 (203)
Q Consensus 92 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~---~L~L~~n-~l~~~~p~~~~~l~~L~-~L~L~~N~l~~~lp 166 (203)
.|.++++|++|++++|.+++ +| .+..+++|+ +|++++| .++...+..|..+++|+ .|++++|+++. +|
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~-lp-----~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-i~ 172 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKM-FP-----DLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQ 172 (239)
T ss_dssp SEECCTTCCEEEEEEECCCS-CC-----CCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-EC
T ss_pred HhCCCCCCCEEeCCCCCCcc-cc-----ccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-cC
Confidence 34444444444444444444 33 233334443 5555555 45433333455555555 55555555553 55
Q ss_pred hhhhCCCCCCcEEEEe------------cCCC-CCCCEEEccCCCCCcCC
Q 035976 167 IEGLSNLRNLQLLDLR------------LANL-TNLKTLDLRDCGITTIQ 203 (203)
Q Consensus 167 ~~~~~~l~~L~~L~l~------------~~~l-~~L~~L~L~~N~l~~ip 203 (203)
...|.. ++|+.|+++ +..+ ++|+.|++++|+|+++|
T Consensus 173 ~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~ 221 (239)
T 2xwt_C 173 GYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALP 221 (239)
T ss_dssp TTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCC
T ss_pred HhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCC
Confidence 433333 455555554 4455 66666666666666654
No 89
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=6.1e-14 Score=103.76 Aligned_cols=118 Identities=20% Similarity=0.236 Sum_probs=87.2
Q ss_pred CeeEEecCCccccccccCccccccccCCccCCCC-CCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCC
Q 035976 63 RVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPF-EELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSI 141 (203)
Q Consensus 63 ~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l-~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~ 141 (203)
.++.++++++ .+... +. +..+ ++|++|++++|.+++ + . .+..+++|++|++++|.+++..
T Consensus 20 ~L~~L~l~~n---~l~~i---------~~-~~~~~~~L~~L~Ls~N~l~~-~-~----~l~~l~~L~~L~Ls~N~l~~~~ 80 (176)
T 1a9n_A 20 RDRELDLRGY---KIPVI---------EN-LGATLDQFDAIDFSDNEIRK-L-D----GFPLLRRLKTLLVNNNRICRIG 80 (176)
T ss_dssp SCEEEECTTS---CCCSC---------CC-GGGGTTCCSEEECCSSCCCE-E-C----CCCCCSSCCEEECCSSCCCEEC
T ss_pred CceEEEeeCC---CCchh---------HH-hhhcCCCCCEEECCCCCCCc-c-c----ccccCCCCCEEECCCCcccccC
Confidence 4677777777 55432 22 3333 488899999998887 3 4 7788888999999999888543
Q ss_pred hhhhcCCCCCcEEeccCCCCCCCcch-hhhCCCCCCcEEEEe--------------cCCCCCCCEEEccCCCCC
Q 035976 142 LPYLNTLISLTTLILRENNIEGSRTI-EGLSNLRNLQLLDLR--------------LANLTNLKTLDLRDCGIT 200 (203)
Q Consensus 142 p~~~~~l~~L~~L~L~~N~l~~~lp~-~~~~~l~~L~~L~l~--------------~~~l~~L~~L~L~~N~l~ 200 (203)
+..+..+++|+.|++++|+++. +|. ..+..+++|++|+++ +..+++|+.|+++.|.+.
T Consensus 81 ~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 81 EGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp SCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred cchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 3445788889999999998876 663 357788888888887 456778888888888653
No 90
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.48 E-value=4.4e-13 Score=106.98 Aligned_cols=101 Identities=33% Similarity=0.356 Sum_probs=89.6
Q ss_pred cCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhC
Q 035976 92 LFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLS 171 (203)
Q Consensus 92 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~ 171 (203)
.+..+++|++|++++|.+++ ++ .+..+++|++|++++|++++. +.+..+++|+.|++++|++++ ++. +.
T Consensus 107 ~l~~l~~L~~L~L~~n~i~~-~~-----~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~-~~~--l~ 175 (291)
T 1h6t_A 107 SLKDLKKLKSLSLEHNGISD-IN-----GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-IVP--LA 175 (291)
T ss_dssp GGTTCTTCCEEECTTSCCCC-CG-----GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-CGG--GT
T ss_pred hhccCCCCCEEECCCCcCCC-Ch-----hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc-chh--hc
Confidence 48889999999999999998 43 678899999999999999964 678899999999999999998 664 89
Q ss_pred CCCCCcEEEEe---------cCCCCCCCEEEccCCCCCcCC
Q 035976 172 NLRNLQLLDLR---------LANLTNLKTLDLRDCGITTIQ 203 (203)
Q Consensus 172 ~l~~L~~L~l~---------~~~l~~L~~L~L~~N~l~~ip 203 (203)
.+++|++|+++ +..+++|+.|++++|+++..|
T Consensus 176 ~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 176 GLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp TCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEEEECCC
T ss_pred CCCccCEEECCCCcCCCChhhccCCCCCEEECcCCcccCCc
Confidence 99999999998 788899999999999886543
No 91
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.48 E-value=2e-13 Score=107.47 Aligned_cols=117 Identities=24% Similarity=0.290 Sum_probs=92.3
Q ss_pred CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCC
Q 035976 62 RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSI 141 (203)
Q Consensus 62 ~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~ 141 (203)
..++.|+++++ .+.+. +. +..+++|++|++++|.+++ +|. +.. ++|++|++++|++++ +
T Consensus 63 ~~L~~L~L~~N---~i~~~---------~~-l~~l~~L~~L~L~~N~l~~-l~~-----~~~-~~L~~L~L~~N~l~~-~ 121 (263)
T 1xeu_A 63 TNLKELHLSHN---QISDL---------SP-LKDLTKLEELSVNRNRLKN-LNG-----IPS-ACLSRLFLDNNELRD-T 121 (263)
T ss_dssp TTCCEEECCSS---CCCCC---------GG-GTTCSSCCEEECCSSCCSC-CTT-----CCC-SSCCEEECCSSCCSB-S
T ss_pred CCCCEEECCCC---ccCCC---------hh-hccCCCCCEEECCCCccCC-cCc-----ccc-CcccEEEccCCccCC-C
Confidence 45667777666 55443 22 7888999999999999988 553 233 889999999999985 3
Q ss_pred hhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe---------cCCCCCCCEEEccCCCCCcCC
Q 035976 142 LPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR---------LANLTNLKTLDLRDCGITTIQ 203 (203)
Q Consensus 142 p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~---------~~~l~~L~~L~L~~N~l~~ip 203 (203)
+.+..+++|+.|++++|++++ ++ .+..+++|++|+++ +..+++|+.|++++|.++..|
T Consensus 122 -~~l~~l~~L~~L~Ls~N~i~~-~~--~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 122 -DSLIHLKNLEILSIRNNKLKS-IV--MLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp -GGGTTCTTCCEEECTTSCCCB-CG--GGGGCTTCCEEECTTSCCCBCTTSTTCCCCCEEEEEEEEEECCC
T ss_pred -hhhcCcccccEEECCCCcCCC-Ch--HHccCCCCCEEECCCCcCcchHHhccCCCCCEEeCCCCcccCCc
Confidence 458889999999999999988 65 58889999999998 677888999999999887653
No 92
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.48 E-value=1e-13 Score=118.23 Aligned_cols=103 Identities=26% Similarity=0.193 Sum_probs=73.9
Q ss_pred CccCCCCCCCCEEEccCCcCCCcccchhhhccC-CCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchh
Q 035976 90 FSLFHPFEELQSLDLSLNAFEGFYENRAYDSNG-SLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIE 168 (203)
Q Consensus 90 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~ 168 (203)
+..+..+++|++|++++|.+++..|. .+. .+++|++|+|++|.+++. | .+..+++|+.|+|++|.+++ +|+
T Consensus 137 ~~~~~~l~~L~~L~Ls~N~l~~~~~~----~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-~~~- 208 (487)
T 3oja_A 137 DLDEGCRSRVQYLDLKLNEIDTVNFA----ELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGP- 208 (487)
T ss_dssp GBCGGGGSSEEEEECTTSCCCEEEGG----GGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECG-
T ss_pred chhhcCCCCCCEEECCCCCCCCcChH----HHhhhCCcccEEecCCCccccc-c-ccccCCCCCEEECCCCCCCC-CCH-
Confidence 44566677777888888877776555 554 577788888888877743 2 23357778888888888877 665
Q ss_pred hhCCCCCCcEEEEe----------cCCCCCCCEEEccCCCCC
Q 035976 169 GLSNLRNLQLLDLR----------LANLTNLKTLDLRDCGIT 200 (203)
Q Consensus 169 ~~~~l~~L~~L~l~----------~~~l~~L~~L~L~~N~l~ 200 (203)
.+..+++|+.|+++ +..+++|+.|++++|.+.
T Consensus 209 ~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 209 EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred hHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 57777888888876 556677888888888775
No 93
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.48 E-value=3.6e-13 Score=121.78 Aligned_cols=125 Identities=23% Similarity=0.278 Sum_probs=103.5
Q ss_pred CeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCCh
Q 035976 63 RVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSIL 142 (203)
Q Consensus 63 ~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p 142 (203)
.++.++++++ .+.+. .+..+..+++|++|++++|.+++..|. .+..+++|++|++++|.+++..|
T Consensus 267 ~L~~L~Ls~n---~l~~~--------~~~~~~~l~~L~~L~L~~n~i~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~ 331 (844)
T 3j0a_A 267 SVRHLDLSHG---FVFSL--------NSRVFETLKDLKVLNLAYNKINKIADE----AFYGLDNLQVLNLSYNLLGELYS 331 (844)
T ss_dssp CCCEEECTTC---CCCEE--------CSCCSSSCCCCCEEEEESCCCCEECTT----TTTTCSSCCEEEEESCCCSCCCS
T ss_pred CccEEECCCC---ccccc--------ChhhhhcCCCCCEEECCCCcCCCCChH----HhcCCCCCCEEECCCCCCCccCH
Confidence 4666766666 44332 467788999999999999999987676 88899999999999999998888
Q ss_pred hhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe------cCCCCCCCEEEccCCCCCcCC
Q 035976 143 PYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR------LANLTNLKTLDLRDCGITTIQ 203 (203)
Q Consensus 143 ~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~------~~~l~~L~~L~L~~N~l~~ip 203 (203)
..+..+++|+.|++++|.+++ ++...|..+++|++|+++ +..+++|+.|++++|+++.+|
T Consensus 332 ~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~ 397 (844)
T 3j0a_A 332 SNFYGLPKVAYIDLQKNHIAI-IQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLP 397 (844)
T ss_dssp CSCSSCTTCCEEECCSCCCCC-CCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCC
T ss_pred HHhcCCCCCCEEECCCCCCCc-cChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCccccc
Confidence 899999999999999999988 665578999999999998 445677888888888877664
No 94
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.48 E-value=1.1e-13 Score=118.41 Aligned_cols=119 Identities=18% Similarity=0.134 Sum_probs=102.2
Q ss_pred CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCC
Q 035976 62 RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSI 141 (203)
Q Consensus 62 ~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~ 141 (203)
.+++.++++++ .+.+. .+..|..+++|++|++++|.+++..|. .+..+++|++|++++|+++ .+
T Consensus 21 ~~L~~L~Ls~n---~i~~~--------~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~N~l~-~l 84 (520)
T 2z7x_B 21 QKTTILNISQN---YISEL--------WTSDILSLSKLRILIISHNRIQYLDIS----VFKFNQELEYLDLSHNKLV-KI 84 (520)
T ss_dssp TTCSEEECCSS---CCCCC--------CHHHHTTCTTCCEEECCSSCCCEEEGG----GGTTCTTCCEEECCSSCCC-EE
T ss_pred ccccEEECCCC---ccccc--------ChhhccccccccEEecCCCccCCcChH----HhhcccCCCEEecCCCcee-ec
Confidence 56788888887 65543 356789999999999999999997677 8999999999999999999 56
Q ss_pred hhhhcCCCCCcEEeccCCCCCC-CcchhhhCCCCCCcEEEEe--------cCCCCCC--CEEEccCCCC
Q 035976 142 LPYLNTLISLTTLILRENNIEG-SRTIEGLSNLRNLQLLDLR--------LANLTNL--KTLDLRDCGI 199 (203)
Q Consensus 142 p~~~~~l~~L~~L~L~~N~l~~-~lp~~~~~~l~~L~~L~l~--------~~~l~~L--~~L~L~~N~l 199 (203)
|.. .+++|++|++++|++++ .+|. .|+.+++|++|+++ +..+++| +.|++++|.+
T Consensus 85 p~~--~l~~L~~L~L~~N~l~~~~~p~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 85 SCH--PTVNLKHLDLSFNAFDALPICK-EFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp ECC--CCCCCSEEECCSSCCSSCCCCG-GGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTT
T ss_pred Ccc--ccCCccEEeccCCccccccchh-hhccCCcceEEEecCcccchhhccccccceeeEEEeecccc
Confidence 766 89999999999999987 4565 89999999999998 5667778 9999999988
No 95
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.48 E-value=2e-13 Score=110.60 Aligned_cols=77 Identities=30% Similarity=0.272 Sum_probs=46.7
Q ss_pred CCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe----------cCCCCCCCEEEc
Q 035976 125 KQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR----------LANLTNLKTLDL 194 (203)
Q Consensus 125 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~----------~~~l~~L~~L~L 194 (203)
++|++|++++|.+++..+..+..+++|+.|++++|++++ ++...+..+++|++|+++ +..+++|+.|++
T Consensus 193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l 271 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM-IENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYL 271 (332)
T ss_dssp SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC-CCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEEC
T ss_pred CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc-CChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEEC
Confidence 345555555566655555556666666666666666666 443356666666666665 445556666666
Q ss_pred cCCCCCcC
Q 035976 195 RDCGITTI 202 (203)
Q Consensus 195 ~~N~l~~i 202 (203)
++|+|+++
T Consensus 272 ~~N~l~~~ 279 (332)
T 2ft3_A 272 HTNNITKV 279 (332)
T ss_dssp CSSCCCBC
T ss_pred CCCCCCcc
Confidence 66666654
No 96
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.48 E-value=4.2e-13 Score=105.61 Aligned_cols=116 Identities=26% Similarity=0.391 Sum_probs=96.1
Q ss_pred CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCC
Q 035976 62 RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSI 141 (203)
Q Consensus 62 ~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~ 141 (203)
.+++.++++++ .+... +.+..+++|++|++++|.+++ ++ .+..+++|++|++++|++++ +
T Consensus 41 ~~L~~L~l~~n---~i~~l----------~~l~~l~~L~~L~L~~N~i~~-~~-----~l~~l~~L~~L~L~~N~l~~-l 100 (263)
T 1xeu_A 41 SGVQNFNGDNS---NIQSL----------AGMQFFTNLKELHLSHNQISD-LS-----PLKDLTKLEELSVNRNRLKN-L 100 (263)
T ss_dssp TTCSEEECTTS---CCCCC----------TTGGGCTTCCEEECCSSCCCC-CG-----GGTTCSSCCEEECCSSCCSC-C
T ss_pred CcCcEEECcCC---Ccccc----------hHHhhCCCCCEEECCCCccCC-Ch-----hhccCCCCCEEECCCCccCC-c
Confidence 34667777776 55432 257889999999999999998 55 36789999999999999995 4
Q ss_pred hhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe---------cCCCCCCCEEEccCCCCCcC
Q 035976 142 LPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR---------LANLTNLKTLDLRDCGITTI 202 (203)
Q Consensus 142 p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~---------~~~l~~L~~L~L~~N~l~~i 202 (203)
|. +.. ++|+.|++++|++++ ++ .+..+++|++|+++ +..+++|+.|++++|+|+++
T Consensus 101 ~~-~~~-~~L~~L~L~~N~l~~-~~--~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 101 NG-IPS-ACLSRLFLDNNELRD-TD--SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp TT-CCC-SSCCEEECCSSCCSB-SG--GGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC
T ss_pred Cc-ccc-CcccEEEccCCccCC-Ch--hhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcch
Confidence 44 333 899999999999998 75 58999999999998 67889999999999999875
No 97
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.47 E-value=4.5e-13 Score=98.76 Aligned_cols=105 Identities=21% Similarity=0.237 Sum_probs=76.5
Q ss_pred CCCCCccccCCCCCCeeEEe---cCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCC
Q 035976 49 SNDWDGVKCNATTRRVMHLL---LNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLK 125 (203)
Q Consensus 49 c~~w~gv~c~~~~~~v~~l~---l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~ 125 (203)
| .|+.+.|.+.. ++.+- ....+.|++++|.+.+. .+..|.++++|++|+|++|++++..+. .+..++
T Consensus 9 C-~~~~l~~s~n~--l~~ip~~~~~~l~~L~L~~N~i~~~---~~~~~~~l~~L~~L~Ls~N~l~~l~~~----~f~~l~ 78 (170)
T 3g39_A 9 C-SGTTVDCSGKS--LASVPTGIPTTTQVLYLYDNQITKL---EPGVFDRLTQLTRLDLDNNQLTVLPAG----VFDKLT 78 (170)
T ss_dssp E-ETTEEECTTSC--CSSCCSCCCTTCSEEECCSSCCCCC---CTTTTTTCTTCSEEECCSSCCCCCCTT----TTTTCT
T ss_pred c-CCCEEEeCCCC--cCccCccCCCCCcEEEcCCCcCCcc---ChhhhcCcccCCEEECCCCCcCccChh----hccCCC
Confidence 6 78888886421 11110 12223334444444333 467889999999999999999985444 578899
Q ss_pred CCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCC
Q 035976 126 QLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEG 163 (203)
Q Consensus 126 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 163 (203)
+|++|+|++|++++..+..|..+++|+.|+|++|.++.
T Consensus 79 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 79 QLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 99999999999997666678999999999999999986
No 98
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.47 E-value=1.9e-13 Score=118.17 Aligned_cols=119 Identities=23% Similarity=0.200 Sum_probs=96.0
Q ss_pred CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCC
Q 035976 62 RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSI 141 (203)
Q Consensus 62 ~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~ 141 (203)
..++.++++++ .+.+. ++..|.++++|++|++++|.+++..|. .+..+++|++|++++|.++ .+
T Consensus 52 ~~L~~L~Ls~N---~i~~~--------~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~-~l 115 (562)
T 3a79_B 52 PRTKALSLSQN---SISEL--------RMPDISFLSELRVLRLSHNRIRSLDFH----VFLFNQDLEYLDVSHNRLQ-NI 115 (562)
T ss_dssp TTCCEEECCSS---CCCCC--------CGGGTTTCTTCCEEECCSCCCCEECTT----TTTTCTTCCEEECTTSCCC-EE
T ss_pred CCcCEEECCCC---Ccccc--------ChhhhccCCCccEEECCCCCCCcCCHH----HhCCCCCCCEEECCCCcCC-cc
Confidence 34556666655 44432 457889999999999999999986676 7889999999999999998 56
Q ss_pred hhhhcCCCCCcEEeccCCCCCC-CcchhhhCCCCCCcEEEEe--------cCCCCCC--CEEEccCCCC
Q 035976 142 LPYLNTLISLTTLILRENNIEG-SRTIEGLSNLRNLQLLDLR--------LANLTNL--KTLDLRDCGI 199 (203)
Q Consensus 142 p~~~~~l~~L~~L~L~~N~l~~-~lp~~~~~~l~~L~~L~l~--------~~~l~~L--~~L~L~~N~l 199 (203)
|.. .+++|++|++++|++++ ++|. .|..+++|++|+++ +..+++| +.|++++|++
T Consensus 116 p~~--~l~~L~~L~Ls~N~l~~l~~p~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 116 SCC--PMASLRHLDLSFNDFDVLPVCK-EFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CSC--CCTTCSEEECCSSCCSBCCCCG-GGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSC
T ss_pred Ccc--ccccCCEEECCCCCccccCchH-hhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccc
Confidence 665 89999999999999987 2344 79999999999998 4555566 9999999988
No 99
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.47 E-value=1.1e-13 Score=111.13 Aligned_cols=111 Identities=19% Similarity=0.159 Sum_probs=60.8
Q ss_pred CCccCCCCCCCCEEEccCCcCCCc--ccchhhhccCCCCCCCEEEccCCCCCCCChh----hhcCCCCCcEEeccCCCCC
Q 035976 89 NFSLFHPFEELQSLDLSLNAFEGF--YENRAYDSNGSLKQLKILNLEANHFNDSILP----YLNTLISLTTLILRENNIE 162 (203)
Q Consensus 89 ~~~~~~~l~~L~~L~L~~N~l~~~--~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~----~~~~l~~L~~L~L~~N~l~ 162 (203)
.+..+..+++|++|++++|.+.+. ++.. ..+..+++|++|++++|+++ .++. .+..+++|+.|++++|+++
T Consensus 161 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~ 237 (310)
T 4glp_A 161 SCEQVRAFPALTSLDLSDNPGLGERGLMAA--LCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLR 237 (310)
T ss_dssp CTTSCCCCTTCCEEECCSCTTCHHHHHHTT--SCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCC
T ss_pred hHHHhccCCCCCEEECCCCCCccchhhhHH--HhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCC
Confidence 355667777777777777776542 1110 02245566666666666665 2232 2345566666666666666
Q ss_pred CCcchhhhCCC---CCCcEEEEe--------cCCCCCCCEEEccCCCCCcCC
Q 035976 163 GSRTIEGLSNL---RNLQLLDLR--------LANLTNLKTLDLRDCGITTIQ 203 (203)
Q Consensus 163 ~~lp~~~~~~l---~~L~~L~l~--------~~~l~~L~~L~L~~N~l~~ip 203 (203)
+..|. .+..+ ++|++|+++ -.-.++|+.|+|++|+|+++|
T Consensus 238 ~~~p~-~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~L~~L~Ls~N~l~~~~ 288 (310)
T 4glp_A 238 ATVNP-SAPRCMWSSALNSLNLSFAGLEQVPKGLPAKLRVLDLSSNRLNRAP 288 (310)
T ss_dssp CCCCS-CCSSCCCCTTCCCEECCSSCCCSCCSCCCSCCSCEECCSCCCCSCC
T ss_pred ccchh-hHHhccCcCcCCEEECCCCCCCchhhhhcCCCCEEECCCCcCCCCc
Confidence 63343 34443 466666665 111245666666666666543
No 100
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.47 E-value=5.5e-14 Score=112.98 Aligned_cols=103 Identities=18% Similarity=0.177 Sum_probs=47.7
Q ss_pred CCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCC--Ch--hhhcCCCCCcEEeccCCCCCCCcchh---
Q 035976 96 FEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDS--IL--PYLNTLISLTTLILRENNIEGSRTIE--- 168 (203)
Q Consensus 96 l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~--~p--~~~~~l~~L~~L~L~~N~l~~~lp~~--- 168 (203)
+++|++|++++|.+++..+. .+..+++|++|++++|++.+. ++ ..+..+++|++|++++|+++. ++..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~ 218 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCE----QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAA 218 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTT----SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHH----HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHH
Confidence 34444444444444443333 444444455555555444321 11 112344445555555555543 3221
Q ss_pred hhCCCCCCcEEEEe-----------cCCC---CCCCEEEccCCCCCcCC
Q 035976 169 GLSNLRNLQLLDLR-----------LANL---TNLKTLDLRDCGITTIQ 203 (203)
Q Consensus 169 ~~~~l~~L~~L~l~-----------~~~l---~~L~~L~L~~N~l~~ip 203 (203)
.+..+++|++|+++ +..+ ++|++|+|++|+|+.+|
T Consensus 219 l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp 267 (310)
T 4glp_A 219 LAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVP 267 (310)
T ss_dssp HHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCC
T ss_pred HHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchh
Confidence 13455666666665 2222 46667777777666654
No 101
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.46 E-value=1.9e-13 Score=117.83 Aligned_cols=126 Identities=23% Similarity=0.198 Sum_probs=100.9
Q ss_pred CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCC
Q 035976 62 RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSI 141 (203)
Q Consensus 62 ~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~ 141 (203)
..++.|+++++ .+.+. .+..|.++++|++|++++|.+++..|. .+..+++|++|++++|.++...
T Consensus 52 ~~L~~L~Ls~n---~i~~i--------~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~ 116 (570)
T 2z63_A 52 PELQVLDLSRC---EIQTI--------EDGAYQSLSHLSTLILTGNPIQSLALG----AFSGLSSLQKLVAVETNLASLE 116 (570)
T ss_dssp SSCCEEECTTC---CCCEE--------CTTTTTTCTTCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTSCCCCST
T ss_pred CCceEEECCCC---cCCcc--------CcccccCchhCCEEeCcCCcCCccCHh----hhcCccccccccccccccccCC
Confidence 34666766666 44432 467789999999999999999986666 8889999999999999998655
Q ss_pred hhhhcCCCCCcEEeccCCCCCC-CcchhhhCCCCCCcEEEEe-----------cCCCCCC----CEEEccCCCCCcCC
Q 035976 142 LPYLNTLISLTTLILRENNIEG-SRTIEGLSNLRNLQLLDLR-----------LANLTNL----KTLDLRDCGITTIQ 203 (203)
Q Consensus 142 p~~~~~l~~L~~L~L~~N~l~~-~lp~~~~~~l~~L~~L~l~-----------~~~l~~L----~~L~L~~N~l~~ip 203 (203)
+..+..+++|++|++++|.+++ .+|. .+.++++|++|+++ +..+++| +.|++++|.+++++
T Consensus 117 ~~~~~~l~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~ 193 (570)
T 2z63_A 117 NFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193 (570)
T ss_dssp TCSCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEEC
T ss_pred CccccccccccEEecCCCccceecChh-hhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecC
Confidence 5578999999999999999986 4575 79999999999997 3344455 78999999887653
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.46 E-value=7.6e-13 Score=115.70 Aligned_cols=100 Identities=33% Similarity=0.361 Sum_probs=60.0
Q ss_pred cCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhC
Q 035976 92 LFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLS 171 (203)
Q Consensus 92 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~ 171 (203)
.+..+++|++|+|++|.+.+ ++ .+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|++++ +++ +.
T Consensus 104 ~l~~l~~L~~L~Ls~N~l~~-l~-----~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~-~~~--l~ 172 (605)
T 1m9s_A 104 SLKDLKKLKSLSLEHNGISD-IN-----GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-IVP--LA 172 (605)
T ss_dssp TSTTCTTCCEEECTTSCCCC-CG-----GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC-CGG--GT
T ss_pred hhccCCCCCEEEecCCCCCC-Cc-----cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC-chh--hc
Confidence 45555666666666666655 22 455566666666666666643 455666666666666666665 432 56
Q ss_pred CCCCCcEEEEe---------cCCCCCCCEEEccCCCCCcC
Q 035976 172 NLRNLQLLDLR---------LANLTNLKTLDLRDCGITTI 202 (203)
Q Consensus 172 ~l~~L~~L~l~---------~~~l~~L~~L~L~~N~l~~i 202 (203)
.+++|+.|+|+ +..+++|+.|+|++|+|++.
T Consensus 173 ~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 173 GLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp TCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEEECC
T ss_pred cCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCcCcCC
Confidence 66666666665 55566666666666665543
No 103
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.46 E-value=9.2e-14 Score=118.54 Aligned_cols=102 Identities=19% Similarity=0.195 Sum_probs=86.0
Q ss_pred CCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhc-CCCCCcEEeccCCCCCCCcchhhhCCC
Q 035976 95 PFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLN-TLISLTTLILRENNIEGSRTIEGLSNL 173 (203)
Q Consensus 95 ~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~lp~~~~~~l 173 (203)
.+++|++|++++|.+++..|. .+..+++|++|++++|.+++..|..+. .+++|+.|+|++|.+++ ++. ...+
T Consensus 118 ~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~-~~~--~~~l 190 (487)
T 3oja_A 118 RGQGKKNIYLANNKITMLRDL----DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKG--QVVF 190 (487)
T ss_dssp CCSSCEEEECCSSCCCSGGGB----CGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EEC--CCCC
T ss_pred ccCCCCEEECCCCCCCCCCch----hhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc-ccc--cccC
Confidence 467889999999999986676 778889999999999999987777775 78999999999999988 653 5568
Q ss_pred CCCcEEEEe----------cCCCCCCCEEEccCCCCCcCC
Q 035976 174 RNLQLLDLR----------LANLTNLKTLDLRDCGITTIQ 203 (203)
Q Consensus 174 ~~L~~L~l~----------~~~l~~L~~L~L~~N~l~~ip 203 (203)
++|+.|+++ +..+++|+.|+|++|.|+++|
T Consensus 191 ~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp 230 (487)
T 3oja_A 191 AKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE 230 (487)
T ss_dssp TTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEEC
T ss_pred CCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccc
Confidence 999999998 667788999999999998876
No 104
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.45 E-value=8.4e-13 Score=97.71 Aligned_cols=71 Identities=25% Similarity=0.284 Sum_probs=57.5
Q ss_pred CCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCC
Q 035976 89 NFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEG 163 (203)
Q Consensus 89 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 163 (203)
.+..|..+++|++|+|++|.+++ +|.. .+..+++|++|+|++|++++..+..|..+++|+.|++++|.+..
T Consensus 49 ~~~~~~~l~~L~~L~Ls~N~l~~-i~~~---~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 49 EPGVFDHLVNLQQLYFNSNKLTA-IPTG---VFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCC-CCTT---TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CHHHhcCCcCCCEEECCCCCCCc-cChh---HhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 46778888999999999999988 4441 46788899999999999986555568888999999999998876
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.45 E-value=9.4e-13 Score=115.12 Aligned_cols=119 Identities=34% Similarity=0.373 Sum_probs=101.7
Q ss_pred CCCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCC
Q 035976 61 TRRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDS 140 (203)
Q Consensus 61 ~~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~ 140 (203)
...++.|+|+++ .+.+. +. +..+++|+.|+|++|.+.+ ++ .+..+++|+.|+|++|.+++
T Consensus 64 l~~L~~L~Ls~N---~l~~~---------~~-l~~l~~L~~L~Ls~N~l~~-l~-----~l~~l~~L~~L~Ls~N~l~~- 123 (605)
T 1m9s_A 64 LPNVTKLFLNGN---KLTDI---------KP-LTNLKNLGWLFLDENKIKD-LS-----SLKDLKKLKSLSLEHNGISD- 123 (605)
T ss_dssp CTTCCEEECTTS---CCCCC---------GG-GGGCTTCCEEECCSSCCCC-CT-----TSTTCTTCCEEECTTSCCCC-
T ss_pred CCCCCEEEeeCC---CCCCC---------hh-hccCCCCCEEECcCCCCCC-Ch-----hhccCCCCCEEEecCCCCCC-
Confidence 346778888777 65543 22 8889999999999999998 44 68899999999999999995
Q ss_pred ChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe---------cCCCCCCCEEEccCCCCCcCC
Q 035976 141 ILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR---------LANLTNLKTLDLRDCGITTIQ 203 (203)
Q Consensus 141 ~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~---------~~~l~~L~~L~L~~N~l~~ip 203 (203)
+ +.+..+++|+.|+|++|++++ ++ .+..+++|+.|+|+ +..+++|+.|+|++|+|+++|
T Consensus 124 l-~~l~~l~~L~~L~Ls~N~l~~-l~--~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l~ 191 (605)
T 1m9s_A 124 I-NGLVHLPQLESLYLGNNKITD-IT--VLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLR 191 (605)
T ss_dssp C-GGGGGCTTCSEEECCSSCCCC-CG--GGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCG
T ss_pred C-ccccCCCccCEEECCCCccCC-ch--hhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCCCh
Confidence 3 568899999999999999998 64 69999999999998 678899999999999998764
No 106
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.45 E-value=1.4e-13 Score=101.74 Aligned_cols=104 Identities=23% Similarity=0.182 Sum_probs=88.7
Q ss_pred ccCCCCCCCCEEEccCCcCCCcccchhhhccCCC-CCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhh
Q 035976 91 SLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSL-KQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEG 169 (203)
Q Consensus 91 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~ 169 (203)
..+..+++|++|++++|.++. +|. +..+ ++|++|++++|.+++. ..+..+++|+.|++++|++++ +|...
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~-i~~-----~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~-~~~~~ 83 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPV-IEN-----LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICR-IGEGL 83 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCS-CCC-----GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCE-ECSCH
T ss_pred HhcCCcCCceEEEeeCCCCch-hHH-----hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccc-cCcch
Confidence 456678899999999999997 553 4444 4999999999999954 678899999999999999998 77645
Q ss_pred hCCCCCCcEEEEe------------cCCCCCCCEEEccCCCCCcCC
Q 035976 170 LSNLRNLQLLDLR------------LANLTNLKTLDLRDCGITTIQ 203 (203)
Q Consensus 170 ~~~l~~L~~L~l~------------~~~l~~L~~L~L~~N~l~~ip 203 (203)
+..+++|++|+++ +..+++|+.|++++|.|+.+|
T Consensus 84 ~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~ 129 (176)
T 1a9n_A 84 DQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 129 (176)
T ss_dssp HHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGST
T ss_pred hhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcH
Confidence 6899999999998 556789999999999998765
No 107
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.43 E-value=3.3e-13 Score=108.82 Aligned_cols=103 Identities=26% Similarity=0.193 Sum_probs=69.1
Q ss_pred CccCCCCCCCCEEEccCCcCCCcccchhhhcc-CCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchh
Q 035976 90 FSLFHPFEELQSLDLSLNAFEGFYENRAYDSN-GSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIE 168 (203)
Q Consensus 90 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~ 168 (203)
+..+..+++|++|++++|.+++..+. .+ ..+++|++|++++|.++.. + ....+++|+.|++++|++++ +|.
T Consensus 137 ~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~- 208 (317)
T 3o53_A 137 DLDEGCRSRVQYLDLKLNEIDTVNFA----ELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGP- 208 (317)
T ss_dssp GBCTGGGSSEEEEECTTSCCCEEEGG----GGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECG-
T ss_pred chhhhccCCCCEEECCCCCCCcccHH----HHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chh-
Confidence 33455666777777777777664443 33 3567777777777777633 2 23346777777777777776 665
Q ss_pred hhCCCCCCcEEEEe----------cCCCCCCCEEEccCCCCC
Q 035976 169 GLSNLRNLQLLDLR----------LANLTNLKTLDLRDCGIT 200 (203)
Q Consensus 169 ~~~~l~~L~~L~l~----------~~~l~~L~~L~L~~N~l~ 200 (203)
.+..+++|++|+++ +..+++|+.|++++|.++
T Consensus 209 ~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 209 EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred hhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence 47777777777776 566677888888888775
No 108
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.43 E-value=1.4e-12 Score=105.82 Aligned_cols=99 Identities=28% Similarity=0.436 Sum_probs=71.6
Q ss_pred CCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCC
Q 035976 93 FHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSN 172 (203)
Q Consensus 93 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~ 172 (203)
+..+++|++|++++|.++. ++ .+..+++|++|++++|.+++. +.+..+++|+.|++++|++++ .+...+..
T Consensus 239 ~~~l~~L~~L~l~~n~l~~-~~-----~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~ 309 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISD-IN-----AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGN-EDMEVIGG 309 (347)
T ss_dssp GTTCTTCCEEECCSSCCCC-CG-----GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCG-GGHHHHHT
T ss_pred hhcCCCCCEEECCCCccCC-Ch-----hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCC-cChhHhhc
Confidence 6677778888888887776 33 567778888888888887743 456777888888888888876 44346778
Q ss_pred CCCCcEEEEe---------cCCCCCCCEEEccCCCCC
Q 035976 173 LRNLQLLDLR---------LANLTNLKTLDLRDCGIT 200 (203)
Q Consensus 173 l~~L~~L~l~---------~~~l~~L~~L~L~~N~l~ 200 (203)
+++|++|+++ +..+++|+.|++++|.|+
T Consensus 310 l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 310 LTNLTTLFLSQNHITDIRPLASLSKMDSADFANQVIK 346 (347)
T ss_dssp CTTCSEEECCSSSCCCCGGGGGCTTCSEESSSCC---
T ss_pred cccCCEEEccCCccccccChhhhhccceeehhhhccc
Confidence 8888888887 566777888888888775
No 109
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.42 E-value=2.6e-13 Score=109.37 Aligned_cols=102 Identities=19% Similarity=0.195 Sum_probs=82.3
Q ss_pred CCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhh-cCCCCCcEEeccCCCCCCCcchhhhCCC
Q 035976 95 PFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYL-NTLISLTTLILRENNIEGSRTIEGLSNL 173 (203)
Q Consensus 95 ~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~lp~~~~~~l 173 (203)
.+++|++|++++|.+++..+. .+..+++|++|++++|.+++..+..+ ..+++|+.|++++|.+++ ++. ...+
T Consensus 118 ~~~~L~~L~l~~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~--~~~l 190 (317)
T 3o53_A 118 RGQGKKNIYLANNKITMLRDL----DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKG--QVVF 190 (317)
T ss_dssp CCSSCEEEECCSSCCCSGGGB----CTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EEC--CCCC
T ss_pred ccCCCCEEECCCCCCCCccch----hhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc-ccc--cccc
Confidence 367788889999988886565 67778889999999999887666666 468889999999999887 653 4568
Q ss_pred CCCcEEEEe----------cCCCCCCCEEEccCCCCCcCC
Q 035976 174 RNLQLLDLR----------LANLTNLKTLDLRDCGITTIQ 203 (203)
Q Consensus 174 ~~L~~L~l~----------~~~l~~L~~L~L~~N~l~~ip 203 (203)
++|++|+++ +..+++|+.|+|++|+|+.+|
T Consensus 191 ~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~ 230 (317)
T 3o53_A 191 AKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE 230 (317)
T ss_dssp TTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEEC
T ss_pred ccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchh
Confidence 899999887 667788999999999988765
No 110
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.42 E-value=5.9e-13 Score=115.60 Aligned_cols=82 Identities=24% Similarity=0.321 Sum_probs=65.3
Q ss_pred CCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCc-chhhhC
Q 035976 93 FHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSR-TIEGLS 171 (203)
Q Consensus 93 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~l-p~~~~~ 171 (203)
+..+++|++|+|++|.++. +|. .+..+++|++|+|++|.+++ +| .+..+++|+.|+|++|++++.. |. .+.
T Consensus 459 ~~~l~~L~~L~Ls~N~l~~-lp~----~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~-~l~ 530 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNRLRA-LPP----ALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQ-PLV 530 (567)
T ss_dssp GGGGTTCCEEECCSSCCCC-CCG----GGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTG-GGG
T ss_pred ccccccCcEeecCcccccc-cch----hhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcH-HHh
Confidence 7888888888888888885 787 78888888888888888885 56 7888888888888888888822 54 677
Q ss_pred CCCCCcEEEEe
Q 035976 172 NLRNLQLLDLR 182 (203)
Q Consensus 172 ~l~~L~~L~l~ 182 (203)
.+++|+.|+++
T Consensus 531 ~l~~L~~L~L~ 541 (567)
T 1dce_A 531 SCPRLVLLNLQ 541 (567)
T ss_dssp GCTTCCEEECT
T ss_pred cCCCCCEEEec
Confidence 77766666665
No 111
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.40 E-value=3.6e-12 Score=107.79 Aligned_cols=100 Identities=30% Similarity=0.407 Sum_probs=66.1
Q ss_pred CCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCC
Q 035976 93 FHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSN 172 (203)
Q Consensus 93 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~ 172 (203)
+..+++|++|++++|.+++ ++ .+..+++|+.|++++|++++..| +..+++|+.|++++|++++ ++ .+..
T Consensus 283 ~~~l~~L~~L~L~~n~l~~-~~-----~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~--~l~~ 351 (466)
T 1o6v_A 283 LAGLTALTNLELNENQLED-IS-----PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD-VS--SLAN 351 (466)
T ss_dssp GTTCTTCSEEECCSSCCSC-CG-----GGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC-CG--GGTT
T ss_pred ccCCCccCeEEcCCCcccC-ch-----hhcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC-ch--hhcc
Confidence 5556666666666666665 33 24556677777777777765443 5666777777777777776 43 4677
Q ss_pred CCCCcEEEEe---------cCCCCCCCEEEccCCCCCcCC
Q 035976 173 LRNLQLLDLR---------LANLTNLKTLDLRDCGITTIQ 203 (203)
Q Consensus 173 l~~L~~L~l~---------~~~l~~L~~L~L~~N~l~~ip 203 (203)
+++|+.|+++ +..+++|+.|++++|+++++|
T Consensus 352 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~~~~~p 391 (466)
T 1o6v_A 352 LTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAP 391 (466)
T ss_dssp CTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCEEEECCC
T ss_pred CCCCCEEeCCCCccCccchhhcCCCCCEEeccCCcccCCc
Confidence 7777777776 566677777777777776654
No 112
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.39 E-value=1.2e-12 Score=113.59 Aligned_cols=96 Identities=25% Similarity=0.310 Sum_probs=87.9
Q ss_pred CCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCc
Q 035976 98 ELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQ 177 (203)
Q Consensus 98 ~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~ 177 (203)
.|+.|++++|.+++ +| .+..+++|+.|++++|.++ .+|..+..+++|+.|+|++|++++ +| .+..+++|+
T Consensus 442 ~L~~L~Ls~n~l~~-lp-----~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp--~l~~l~~L~ 511 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LC-----HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD--GVANLPRLQ 511 (567)
T ss_dssp TCSEEECTTSCCSS-CC-----CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG--GGTTCSSCC
T ss_pred CceEEEecCCCCCC-Cc-----CccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc--ccCCCCCCc
Confidence 58899999999998 66 5778999999999999999 789999999999999999999998 87 699999999
Q ss_pred EEEEe------------cCCCCCCCEEEccCCCCCcCC
Q 035976 178 LLDLR------------LANLTNLKTLDLRDCGITTIQ 203 (203)
Q Consensus 178 ~L~l~------------~~~l~~L~~L~L~~N~l~~ip 203 (203)
+|+++ ++.+++|+.|+|++|+|+++|
T Consensus 512 ~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 512 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp EEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred EEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 99998 456789999999999998875
No 113
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.39 E-value=5.6e-12 Score=106.69 Aligned_cols=97 Identities=24% Similarity=0.222 Sum_probs=62.2
Q ss_pred CCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCC
Q 035976 93 FHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSN 172 (203)
Q Consensus 93 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~ 172 (203)
+..+++|++|++++|.+++ + .+..+++|++|++++|++++ +| +..+++|+.|++++|++++ ++ +..
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~-~------~~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~---l~~ 146 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTN-L------DVTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID---VSH 146 (457)
T ss_dssp CTTCTTCSEEECCSSCCSC-C------CCTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC---CTT
T ss_pred cccCCCCCEEECcCCCCce-e------ecCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec---ccc
Confidence 5666777777777777766 2 24566777777777777764 33 6667777777777777776 43 455
Q ss_pred CCCCcEEEEe---------cCCCCCCCEEEccCCCCCcCC
Q 035976 173 LRNLQLLDLR---------LANLTNLKTLDLRDCGITTIQ 203 (203)
Q Consensus 173 l~~L~~L~l~---------~~~l~~L~~L~L~~N~l~~ip 203 (203)
+++|++|+++ +..+++|+.|++++|+|+++|
T Consensus 147 l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~ 186 (457)
T 3bz5_A 147 NTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD 186 (457)
T ss_dssp CTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC
T ss_pred CCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec
Confidence 6666666654 445556666666666665543
No 114
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.39 E-value=1.9e-12 Score=105.34 Aligned_cols=86 Identities=19% Similarity=0.128 Sum_probs=68.5
Q ss_pred CccCCCCCCCCEEEccC-CcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchh
Q 035976 90 FSLFHPFEELQSLDLSL-NAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIE 168 (203)
Q Consensus 90 ~~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~ 168 (203)
|. +..+++|++|+|++ |.+++..+. .|..+++|++|+|++|+|++..|..|..+++|+.|+|++|+|++ +|..
T Consensus 25 p~-l~~~~~L~~L~l~~~n~l~~~~~~----~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~ 98 (347)
T 2ifg_A 25 HH-LPGAENLTELYIENQQHLQHLELR----DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALES-LSWK 98 (347)
T ss_dssp TT-SCSCSCCSEEECCSCSSCCEECGG----GSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSC-CCST
T ss_pred CC-CCCCCCeeEEEccCCCCCCCcChh----HhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccce-eCHH
Confidence 44 88888999999996 999985555 78889999999999999998778888999999999999999998 7764
Q ss_pred hhCCCCCCcEEEEe
Q 035976 169 GLSNLRNLQLLDLR 182 (203)
Q Consensus 169 ~~~~l~~L~~L~l~ 182 (203)
.|..++ |+.|+|.
T Consensus 99 ~~~~~~-L~~l~l~ 111 (347)
T 2ifg_A 99 TVQGLS-LQELVLS 111 (347)
T ss_dssp TTCSCC-CCEEECC
T ss_pred HcccCC-ceEEEee
Confidence 444433 5555444
No 115
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.37 E-value=8.9e-12 Score=101.13 Aligned_cols=118 Identities=27% Similarity=0.335 Sum_probs=77.5
Q ss_pred CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCC
Q 035976 62 RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSI 141 (203)
Q Consensus 62 ~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~ 141 (203)
.+++.++++++ .+.+. +. +..+++|++|++++|.++. ++ .+..+++|++|++++|.+++ +
T Consensus 66 ~~L~~L~l~~n---~i~~~---------~~-~~~l~~L~~L~L~~n~i~~-~~-----~~~~l~~L~~L~l~~n~i~~-~ 125 (347)
T 4fmz_A 66 TNLEYLNLNGN---QITDI---------SP-LSNLVKLTNLYIGTNKITD-IS-----ALQNLTNLRELYLNEDNISD-I 125 (347)
T ss_dssp TTCCEEECCSS---CCCCC---------GG-GTTCTTCCEEECCSSCCCC-CG-----GGTTCTTCSEEECTTSCCCC-C
T ss_pred CCccEEEccCC---ccccc---------hh-hhcCCcCCEEEccCCcccC-ch-----HHcCCCcCCEEECcCCcccC-c
Confidence 34666666666 44332 12 6777788888888887776 33 56777788888888777774 3
Q ss_pred hhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe---------cCCCCCCCEEEccCCCCCcC
Q 035976 142 LPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR---------LANLTNLKTLDLRDCGITTI 202 (203)
Q Consensus 142 p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~---------~~~l~~L~~L~L~~N~l~~i 202 (203)
+. +..+++|+.|++++|.....++ .+..+++|++|+++ +..+++|+.|++++|.++++
T Consensus 126 ~~-~~~l~~L~~L~l~~n~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 192 (347)
T 4fmz_A 126 SP-LANLTKMYSLNLGANHNLSDLS--PLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDI 192 (347)
T ss_dssp GG-GTTCTTCCEEECTTCTTCCCCG--GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCC
T ss_pred hh-hccCCceeEEECCCCCCccccc--chhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccc
Confidence 33 6677777777777775444243 36777777777776 45566677777777766654
No 116
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.37 E-value=6.1e-12 Score=106.40 Aligned_cols=117 Identities=26% Similarity=0.360 Sum_probs=84.4
Q ss_pred CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCC
Q 035976 62 RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSI 141 (203)
Q Consensus 62 ~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~ 141 (203)
.+++.|+++++ .+.+. +. +..+++|++|++++|.+++ ++ .+..+++|++|++++|.+++.
T Consensus 68 ~~L~~L~Ls~n---~l~~~---------~~-~~~l~~L~~L~l~~n~l~~-~~-----~~~~l~~L~~L~L~~n~l~~~- 127 (466)
T 1o6v_A 68 NNLTQINFSNN---QLTDI---------TP-LKNLTKLVDILMNNNQIAD-IT-----PLANLTNLTGLTLFNNQITDI- 127 (466)
T ss_dssp TTCCEEECCSS---CCCCC---------GG-GTTCTTCCEEECCSSCCCC-CG-----GGTTCTTCCEEECCSSCCCCC-
T ss_pred cCCCEEECCCC---ccCCc---------hh-hhccccCCEEECCCCcccc-Ch-----hhcCCCCCCEEECCCCCCCCC-
Confidence 35666766666 44433 22 7888889999999998887 44 367788899999999888854
Q ss_pred hhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe--------cCCCCCCCEEEccCCCCCcC
Q 035976 142 LPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR--------LANLTNLKTLDLRDCGITTI 202 (203)
Q Consensus 142 p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~--------~~~l~~L~~L~L~~N~l~~i 202 (203)
+. +..+++|+.|++++|.+++ ++ .+..+++|++|+++ +..+++|+.|++++|.++++
T Consensus 128 ~~-~~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 192 (466)
T 1o6v_A 128 DP-LKNLTNLNRLELSSNTISD-IS--ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI 192 (466)
T ss_dssp GG-GTTCTTCSEEEEEEEEECC-CG--GGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC
T ss_pred hH-HcCCCCCCEEECCCCccCC-Ch--hhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC
Confidence 33 7888889999999888887 65 36777777777665 55666666666666666543
No 117
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.33 E-value=2e-11 Score=103.37 Aligned_cols=97 Identities=23% Similarity=0.150 Sum_probs=42.4
Q ss_pred CCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCC
Q 035976 93 FHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSN 172 (203)
Q Consensus 93 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~ 172 (203)
+..+++|++|++++|.+++ ++ +..+++|++|++++|...+.+ .+..+++|+.|++++|++++ +| +..
T Consensus 123 ~~~l~~L~~L~l~~N~l~~-l~------l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~---l~~ 189 (457)
T 3bz5_A 123 VSQNPLLTYLNCARNTLTE-ID------VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD---VSQ 189 (457)
T ss_dssp CTTCTTCCEEECTTSCCSC-CC------CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC---CTT
T ss_pred CCCCCcCCEEECCCCccce-ec------cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec---ccc
Confidence 4445555555555555554 21 223333333333333222222 23344455555555555554 33 344
Q ss_pred CCCCcEEEEe--------cCCCCCCCEEEccCCCCCcC
Q 035976 173 LRNLQLLDLR--------LANLTNLKTLDLRDCGITTI 202 (203)
Q Consensus 173 l~~L~~L~l~--------~~~l~~L~~L~L~~N~l~~i 202 (203)
+++|+.|+++ ++.+++|+.|++++|+|+++
T Consensus 190 l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~i 227 (457)
T 3bz5_A 190 NKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEI 227 (457)
T ss_dssp CTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCC
T ss_pred CCCCCEEECcCCcCCeeccccCCCCCEEECcCCccccc
Confidence 4444444444 33444444444444444443
No 118
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.33 E-value=5.6e-12 Score=109.45 Aligned_cols=137 Identities=19% Similarity=0.203 Sum_probs=70.4
Q ss_pred ccCCCCCCCCCCCCCCC----CCCcc-ccCCCCCCeeEEecCCccccccccC----------------ccccccccCCcc
Q 035976 34 ILTSWVDDDGMSSDCSN----DWDGV-KCNATTRRVMHLLLNDTAKFNFSYN----------------SLFGVSLMNFSL 92 (203)
Q Consensus 34 ~~~~W~~~~~~~~~~c~----~w~gv-~c~~~~~~v~~l~l~~~~~l~l~~~----------------~l~~~~~~~~~~ 92 (203)
.+.+|... ..+|. .|.++ .|.. .+++.|+++++ .+.+. .+... +
T Consensus 32 ~l~~W~~~----~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n---~L~~lp~~l~~~L~~L~Ls~N~l~~i----p-- 96 (571)
T 3cvr_A 32 AWDKWEKQ----ALPGENRNEAVSLLKECLI--NQFSELQLNRL---NLSSLPDNLPPQITVLEITQNALISL----P-- 96 (571)
T ss_dssp HHHHHHTT----CCTTCCHHHHHHHHHHHHH--TTCSEEECCSS---CCSCCCSCCCTTCSEEECCSSCCSCC----C--
T ss_pred HHHHHhcc----CCccccccchhhhcccccc--CCccEEEeCCC---CCCccCHhHcCCCCEEECcCCCCccc----c--
Confidence 35567652 34552 37888 6743 46888888877 44432 11110 1
Q ss_pred CCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCC
Q 035976 93 FHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSN 172 (203)
Q Consensus 93 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~ 172 (203)
..+++|++|++++|.+++ +|. +.. +|++|++++|.+++ +|. .+++|+.|++++|.+++ +|. .
T Consensus 97 -~~l~~L~~L~Ls~N~l~~-ip~-----l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~----~ 158 (571)
T 3cvr_A 97 -ELPASLEYLDACDNRLST-LPE-----LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE----L 158 (571)
T ss_dssp -CCCTTCCEEECCSSCCSC-CCC-----CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC----C
T ss_pred -cccCCCCEEEccCCCCCC-cch-----hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC----c
Confidence 223445555555555544 332 111 55555555555553 333 34555666666665555 542 3
Q ss_pred CCCCcEEEEe---cCCC----CCCCEEEccCCCCCcCC
Q 035976 173 LRNLQLLDLR---LANL----TNLKTLDLRDCGITTIQ 203 (203)
Q Consensus 173 l~~L~~L~l~---~~~l----~~L~~L~L~~N~l~~ip 203 (203)
+++|++|+++ +..+ ++|+.|+|++|+|+.+|
T Consensus 159 l~~L~~L~Ls~N~L~~lp~l~~~L~~L~Ls~N~L~~lp 196 (571)
T 3cvr_A 159 PTSLEVLSVRNNQLTFLPELPESLEALDVSTNLLESLP 196 (571)
T ss_dssp CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCC
T ss_pred CCCcCEEECCCCCCCCcchhhCCCCEEECcCCCCCchh
Confidence 4556666665 1111 35666666666666554
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.32 E-value=3.1e-12 Score=114.06 Aligned_cols=85 Identities=22% Similarity=0.296 Sum_probs=74.8
Q ss_pred CccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhh
Q 035976 90 FSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEG 169 (203)
Q Consensus 90 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~ 169 (203)
+..+..+++|++|+|++|.++. +|. .+..+++|++|+|++|.++ .+|..|..+++|++|+|++|.|+. +|. .
T Consensus 240 ~~~~~~l~~L~~L~Ls~N~l~~-lp~----~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~-lp~-~ 311 (727)
T 4b8c_D 240 SANIFKYDFLTRLYLNGNSLTE-LPA----EIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTT-LPW-E 311 (727)
T ss_dssp CGGGGGCCSCSCCBCTTSCCSC-CCG----GGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCC-CCS-S
T ss_pred ChhhcCCCCCCEEEeeCCcCcc-cCh----hhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCc-cCh-h
Confidence 3445588999999999999994 887 8889999999999999999 778889999999999999999986 886 6
Q ss_pred hCCCCCCcEEEEe
Q 035976 170 LSNLRNLQLLDLR 182 (203)
Q Consensus 170 ~~~l~~L~~L~l~ 182 (203)
|..+++|++|+|+
T Consensus 312 ~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 312 FGNLCNLQFLGVE 324 (727)
T ss_dssp TTSCTTCCCEECT
T ss_pred hhcCCCccEEeCC
Confidence 9999999999997
No 120
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.30 E-value=1.5e-14 Score=109.01 Aligned_cols=83 Identities=24% Similarity=0.292 Sum_probs=37.7
Q ss_pred cCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcch-hhh
Q 035976 92 LFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTI-EGL 170 (203)
Q Consensus 92 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~-~~~ 170 (203)
.+..+++|++|++++|.++. +|. .+..+++|++|++++|++++ +| .+..+++|+.|++++|++++ ++. ..+
T Consensus 65 ~~~~l~~L~~L~l~~n~l~~-l~~----~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~-~~~~~~l 136 (198)
T 1ds9_A 65 SLSGMENLRILSLGRNLIKK-IEN----LDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITN-WGEIDKL 136 (198)
T ss_dssp CHHHHTTCCEEEEEEEEECS-CSS----HHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCC-HHHHHHH
T ss_pred ccccCCCCCEEECCCCCccc-ccc----hhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCc-hhHHHHH
Confidence 34444455555555555443 343 33334445555555555542 22 34444455555555555544 321 234
Q ss_pred CCCCCCcEEEEe
Q 035976 171 SNLRNLQLLDLR 182 (203)
Q Consensus 171 ~~l~~L~~L~l~ 182 (203)
..+++|++|+++
T Consensus 137 ~~l~~L~~L~l~ 148 (198)
T 1ds9_A 137 AALDKLEDLLLA 148 (198)
T ss_dssp TTTTTCSEEEEC
T ss_pred hcCCCCCEEEec
Confidence 444444444444
No 121
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.30 E-value=2.8e-11 Score=102.38 Aligned_cols=62 Identities=16% Similarity=0.229 Sum_probs=39.0
Q ss_pred cCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCC
Q 035976 92 LFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEG 163 (203)
Q Consensus 92 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 163 (203)
.+..+++|++|++++|.+++ +|. . .++|++|++++|++++ +| .+..+++|+.|++++|++++
T Consensus 148 ~~~~l~~L~~L~l~~N~l~~-lp~----~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~ 209 (454)
T 1jl5_A 148 ELQNSSFLKIIDVDNNSLKK-LPD----L---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK 209 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSC-CCC----C---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS
T ss_pred ccCCCCCCCEEECCCCcCcc-cCC----C---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc
Confidence 47777778888888887776 554 2 2366666666666664 34 35556666666666555554
No 122
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.24 E-value=4.4e-12 Score=111.14 Aligned_cols=70 Identities=20% Similarity=0.151 Sum_probs=41.4
Q ss_pred CCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCC
Q 035976 96 FEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRN 175 (203)
Q Consensus 96 l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~ 175 (203)
+++|++|++++|.++. +|. .+++|++|++++|.+++ +|. .+++|+.|++++|++++ +|. . +++
T Consensus 80 l~~L~~L~Ls~N~l~~-lp~-------~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~-~---l~~ 142 (622)
T 3g06_A 80 PPELRTLEVSGNQLTS-LPV-------LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPV-L---PPG 142 (622)
T ss_dssp CTTCCEEEECSCCCSC-CCC-------CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCC-C---CTT
T ss_pred CCCCCEEEcCCCcCCc-CCC-------CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCC-C---CCC
Confidence 4566666666666655 442 35566666666666663 333 44566666666666665 553 2 366
Q ss_pred CcEEEEe
Q 035976 176 LQLLDLR 182 (203)
Q Consensus 176 L~~L~l~ 182 (203)
|++|+++
T Consensus 143 L~~L~Ls 149 (622)
T 3g06_A 143 LQELSVS 149 (622)
T ss_dssp CCEEECC
T ss_pred CCEEECc
Confidence 7777766
No 123
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.24 E-value=5e-12 Score=102.10 Aligned_cols=85 Identities=24% Similarity=0.171 Sum_probs=45.6
Q ss_pred CCCCCCCCEEEccCCcCCCc-ccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCC-CCCCC-cchhh
Q 035976 93 FHPFEELQSLDLSLNAFEGF-YENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILREN-NIEGS-RTIEG 169 (203)
Q Consensus 93 ~~~l~~L~~L~L~~N~l~~~-~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~-lp~~~ 169 (203)
+..+++|++|++++|.+++. ++. .+..+++|++|++++|.+++..|..+..+++|+.|++++| .+++. ++. .
T Consensus 89 ~~~~~~L~~L~L~~~~l~~~~~~~----~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~-~ 163 (336)
T 2ast_B 89 HFSPFRVQHMDLSNSVIEVSTLHG----ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT-L 163 (336)
T ss_dssp CCCCBCCCEEECTTCEECHHHHHH----HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH-H
T ss_pred hccCCCCCEEEccCCCcCHHHHHH----HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHH-H
Confidence 34456666666666665543 443 4555566666666666555545555555555666666555 44431 332 3
Q ss_pred hCCCCCCcEEEEe
Q 035976 170 LSNLRNLQLLDLR 182 (203)
Q Consensus 170 ~~~l~~L~~L~l~ 182 (203)
+..+++|++|+++
T Consensus 164 ~~~~~~L~~L~l~ 176 (336)
T 2ast_B 164 LSSCSRLDELNLS 176 (336)
T ss_dssp HHHCTTCCEEECC
T ss_pred HhcCCCCCEEcCC
Confidence 4455555555554
No 124
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.22 E-value=9.6e-13 Score=106.31 Aligned_cols=132 Identities=17% Similarity=0.200 Sum_probs=107.7
Q ss_pred CCCCCCCccccCCCCCCeeEEecCCccccccccCccccccccCCccCCCC--CCCCEEEccCCcCCCcccchhhhccCCC
Q 035976 47 DCSNDWDGVKCNATTRRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPF--EELQSLDLSLNAFEGFYENRAYDSNGSL 124 (203)
Q Consensus 47 ~~c~~w~gv~c~~~~~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l--~~L~~L~L~~N~l~~~~p~~~~~~l~~l 124 (203)
-|. .|.++.|+. ..++.++++++ .+.. ..+..+ +.++.|++++|.+.+..+ .+..+
T Consensus 35 vc~-~W~~~~~~~--~~~~~l~l~~~---~~~~-----------~~~~~~~~~~l~~L~l~~n~l~~~~~-----~~~~~ 92 (336)
T 2ast_B 35 VCK-RWYRLASDE--SLWQTLDLTGK---NLHP-----------DVTGRLLSQGVIAFRCPRSFMDQPLA-----EHFSP 92 (336)
T ss_dssp SCH-HHHHHHTCS--TTSSEEECTTC---BCCH-----------HHHHHHHHTTCSEEECTTCEECSCCC-----SCCCC
T ss_pred HHH-HHHHHhcCc--hhheeeccccc---cCCH-----------HHHHhhhhccceEEEcCCccccccch-----hhccC
Confidence 344 899998853 45778888877 4432 234445 789999999999999544 56679
Q ss_pred CCCCEEEccCCCCCCC-ChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe-------------cCCCCCCC
Q 035976 125 KQLKILNLEANHFNDS-ILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-------------LANLTNLK 190 (203)
Q Consensus 125 ~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~-------------~~~l~~L~ 190 (203)
++|++|++++|.+++. +|..+..+++|+.|++++|.+++..+. .+..+++|++|+++ +..+++|+
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~-~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~ 171 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN-TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 171 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHH-HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHH-HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence 9999999999999865 778889999999999999999875664 78999999999997 45688999
Q ss_pred EEEccCC-CCCc
Q 035976 191 TLDLRDC-GITT 201 (203)
Q Consensus 191 ~L~L~~N-~l~~ 201 (203)
+|++++| .+++
T Consensus 172 ~L~l~~~~~l~~ 183 (336)
T 2ast_B 172 ELNLSWCFDFTE 183 (336)
T ss_dssp EEECCCCTTCCH
T ss_pred EEcCCCCCCcCh
Confidence 9999999 8864
No 125
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.22 E-value=1.2e-10 Score=101.04 Aligned_cols=117 Identities=21% Similarity=0.229 Sum_probs=88.4
Q ss_pred CeeEEecCCc------------cccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEE
Q 035976 63 RVMHLLLNDT------------AKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKIL 130 (203)
Q Consensus 63 ~v~~l~l~~~------------~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L 130 (203)
.++.|+++++ +.|++++|.+.+. +. +.+ +|++|++++|.+++ +| . .+++|++|
T Consensus 81 ~L~~L~Ls~N~l~~ip~~l~~L~~L~Ls~N~l~~i----p~-l~~--~L~~L~Ls~N~l~~-lp-----~--~l~~L~~L 145 (571)
T 3cvr_A 81 QITVLEITQNALISLPELPASLEYLDACDNRLSTL----PE-LPA--SLKHLDVDNNQLTM-LP-----E--LPALLEYI 145 (571)
T ss_dssp TCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSCC----CC-CCT--TCCEEECCSSCCSC-CC-----C--CCTTCCEE
T ss_pred CCCEEECcCCCCcccccccCCCCEEEccCCCCCCc----ch-hhc--CCCEEECCCCcCCC-CC-----C--cCccccEE
Confidence 4556666554 3344555555443 22 444 89999999999999 66 3 57899999
Q ss_pred EccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe---cCCCC----CC-------CEEEccC
Q 035976 131 NLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR---LANLT----NL-------KTLDLRD 196 (203)
Q Consensus 131 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~---~~~l~----~L-------~~L~L~~ 196 (203)
++++|.+++ +|. .+++|+.|++++|++++ +|. +. ++|++|+++ +..++ +| +.|+|++
T Consensus 146 ~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~--l~--~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~ 216 (571)
T 3cvr_A 146 NADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE--LP--ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRE 216 (571)
T ss_dssp ECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC--CC--TTCCEEECCSSCCSSCCCCC--------CCEEEECCS
T ss_pred eCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch--hh--CCCCEEECcCCCCCchhhHHHhhhcccccceEEecCC
Confidence 999999996 665 67899999999999998 885 55 899999998 33322 57 9999999
Q ss_pred CCCCcCC
Q 035976 197 CGITTIQ 203 (203)
Q Consensus 197 N~l~~ip 203 (203)
|+|+.||
T Consensus 217 N~l~~lp 223 (571)
T 3cvr_A 217 NRITHIP 223 (571)
T ss_dssp SCCCCCC
T ss_pred CcceecC
Confidence 9999887
No 126
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.21 E-value=5.1e-11 Score=96.81 Aligned_cols=94 Identities=19% Similarity=0.216 Sum_probs=80.5
Q ss_pred CEEEccCC-cCCCcccchhhhccCCCCCCCEEEccC-CCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCc
Q 035976 100 QSLDLSLN-AFEGFYENRAYDSNGSLKQLKILNLEA-NHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQ 177 (203)
Q Consensus 100 ~~L~L~~N-~l~~~~p~~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~ 177 (203)
..++++++ .++. +| .+..+++|++|+|++ |.+++..+..|..+++|+.|+|++|+|++ +++..|..+++|+
T Consensus 11 ~~v~~~~~n~l~~-ip-----~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~ 83 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LH-----HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPRLS 83 (347)
T ss_dssp SCEECCSSCCCTT-TT-----TSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCSCCC
T ss_pred CEEEcCCCCCCCc-cC-----CCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce-eCHHHhcCCcCCC
Confidence 35688888 8887 77 467789999999996 99997777889999999999999999999 6666899999999
Q ss_pred EEEEe-----------cCCCCCCCEEEccCCCCCc
Q 035976 178 LLDLR-----------LANLTNLKTLDLRDCGITT 201 (203)
Q Consensus 178 ~L~l~-----------~~~l~~L~~L~L~~N~l~~ 201 (203)
+|+|+ +..++ |+.|+|++|.|..
T Consensus 84 ~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 84 RLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp EEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred EEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 99998 33343 9999999999863
No 127
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.21 E-value=1.4e-10 Score=97.99 Aligned_cols=94 Identities=20% Similarity=0.188 Sum_probs=68.5
Q ss_pred CCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCC
Q 035976 97 EELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNL 176 (203)
Q Consensus 97 ~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L 176 (203)
++|++|++++|.+++ +| .+..+++|++|++++|++++ +|.. ..+|+.|++++|++++ +| .+..+++|
T Consensus 131 ~~L~~L~L~~n~l~~-lp-----~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~--~~~~l~~L 197 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-----ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP--ELQNLPFL 197 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-----CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC--CCTTCTTC
T ss_pred CCCCEEECcCCCCCC-Cc-----ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc--cccCCCCC
Confidence 577778888777776 55 46777888888888888774 4543 2478888888888877 66 47888888
Q ss_pred cEEEEe---cC----CCCCCCEEEccCCCCCcCC
Q 035976 177 QLLDLR---LA----NLTNLKTLDLRDCGITTIQ 203 (203)
Q Consensus 177 ~~L~l~---~~----~l~~L~~L~L~~N~l~~ip 203 (203)
++|+++ +. ..++|+.|++++|+++.+|
T Consensus 198 ~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp 231 (454)
T 1jl5_A 198 TAIYADNNSLKKLPDLPLSLESIVAGNNILEELP 231 (454)
T ss_dssp CEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCC
T ss_pred CEEECCCCcCCcCCCCcCcccEEECcCCcCCccc
Confidence 888887 22 2346888888888887765
No 128
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.20 E-value=3.9e-12 Score=104.30 Aligned_cols=104 Identities=24% Similarity=0.278 Sum_probs=57.9
Q ss_pred CCCCEEEccCCcCCCcccchhhhccCCC-CCCCEEEccCCCCCCCChhhh----cC-CCCCcEEeccCCCCCCC----cc
Q 035976 97 EELQSLDLSLNAFEGFYENRAYDSNGSL-KQLKILNLEANHFNDSILPYL----NT-LISLTTLILRENNIEGS----RT 166 (203)
Q Consensus 97 ~~L~~L~L~~N~l~~~~p~~~~~~l~~l-~~L~~L~L~~n~l~~~~p~~~----~~-l~~L~~L~L~~N~l~~~----lp 166 (203)
++|++|++++|.+++..+......+..+ ++|++|++++|.+++..+..+ .. .++|+.|++++|.++.. ++
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 5666777777666653332111123333 567777777777665544433 23 24677777777776631 22
Q ss_pred hhhhCCCC-CCcEEEEe---------------cCCC-CCCCEEEccCCCCCc
Q 035976 167 IEGLSNLR-NLQLLDLR---------------LANL-TNLKTLDLRDCGITT 201 (203)
Q Consensus 167 ~~~~~~l~-~L~~L~l~---------------~~~l-~~L~~L~L~~N~l~~ 201 (203)
. .+..++ +|++|+++ +..+ ++|+.|+|++|.|+.
T Consensus 160 ~-~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 160 Q-ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp H-HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred H-HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 1 234444 77777776 2223 477777777777654
No 129
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.15 E-value=7.3e-12 Score=103.35 Aligned_cols=106 Identities=19% Similarity=0.257 Sum_probs=73.5
Q ss_pred cCCCCCCCCEEEccCCcCCC-----cccchhhhccCCCCCCCEEEccCCCCC----CCChhhhcCCCCCcEEeccCCCCC
Q 035976 92 LFHPFEELQSLDLSLNAFEG-----FYENRAYDSNGSLKQLKILNLEANHFN----DSILPYLNTLISLTTLILRENNIE 162 (203)
Q Consensus 92 ~~~~l~~L~~L~L~~N~l~~-----~~p~~~~~~l~~l~~L~~L~L~~n~l~----~~~p~~~~~l~~L~~L~L~~N~l~ 162 (203)
.+..+++|++|++++|.++. .++. .+..+++|++|++++|.++ ..+|..+..+++|+.|+|++|.++
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~----~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~ 257 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLE----GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 257 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHT----TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHH----HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCc
Confidence 34456778888888887762 2332 5566778888888888875 456677777888888888888877
Q ss_pred CC----cchhhh--CCCCCCcEEEEe---------------c-CCCCCCCEEEccCCCCCcC
Q 035976 163 GS----RTIEGL--SNLRNLQLLDLR---------------L-ANLTNLKTLDLRDCGITTI 202 (203)
Q Consensus 163 ~~----lp~~~~--~~l~~L~~L~l~---------------~-~~l~~L~~L~L~~N~l~~i 202 (203)
+. ++. .+ +.+++|++|+++ + ..+++|+.|+|++|+|++.
T Consensus 258 ~~~~~~l~~-~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 258 ARGAAAVVD-AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HHHHHHHHH-HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred hhhHHHHHH-HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 52 232 44 347888888887 2 4467888888888887653
No 130
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.11 E-value=1.7e-11 Score=101.19 Aligned_cols=103 Identities=27% Similarity=0.274 Sum_probs=60.3
Q ss_pred CCCCCCCEEEccCCcCCC----cccchhhhccCCCCCCCEEEccCCCCCCCChhhhc----CC---------CCCcEEec
Q 035976 94 HPFEELQSLDLSLNAFEG----FYENRAYDSNGSLKQLKILNLEANHFNDSILPYLN----TL---------ISLTTLIL 156 (203)
Q Consensus 94 ~~l~~L~~L~L~~N~l~~----~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~----~l---------~~L~~L~L 156 (203)
..+++|++|+|++|.++. .++. .+..+++|++|++++|.++...+..+. .+ ++|+.|++
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~----~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L 166 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLID----FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIIC 166 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHH----HHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHH----HHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEEC
Confidence 456666666666666665 2443 555566666666666666533222222 22 66777777
Q ss_pred cCCCCC-CCcch--hhhCCCCCCcEEEEe----------------cCCCCCCCEEEccCCCCC
Q 035976 157 RENNIE-GSRTI--EGLSNLRNLQLLDLR----------------LANLTNLKTLDLRDCGIT 200 (203)
Q Consensus 157 ~~N~l~-~~lp~--~~~~~l~~L~~L~l~----------------~~~l~~L~~L~L~~N~l~ 200 (203)
++|+++ ..++. ..+..+++|++|+++ +..+++|+.|+|++|.|+
T Consensus 167 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~ 229 (386)
T 2ca6_A 167 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 229 (386)
T ss_dssp CSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred CCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCC
Confidence 777765 22331 145566677777776 235567777777777763
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.10 E-value=1.5e-12 Score=97.98 Aligned_cols=100 Identities=27% Similarity=0.324 Sum_probs=89.1
Q ss_pred cCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhC
Q 035976 92 LFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLS 171 (203)
Q Consensus 92 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~ 171 (203)
.+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|+.|++++|++++ +| .+.
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-----~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~--~~~ 112 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-----SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS--GIE 112 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-----CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH--HHH
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-----ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC--ccc
Confidence 67889999999999999998 65 5677899999999999999 678878888999999999999998 76 588
Q ss_pred CCCCCcEEEEe------------cCCCCCCCEEEccCCCCCc
Q 035976 172 NLRNLQLLDLR------------LANLTNLKTLDLRDCGITT 201 (203)
Q Consensus 172 ~l~~L~~L~l~------------~~~l~~L~~L~L~~N~l~~ 201 (203)
.+++|++|+++ +..+++|++|++++|.+++
T Consensus 113 ~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 89999999998 6788999999999998754
No 132
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.10 E-value=2.9e-11 Score=99.12 Aligned_cols=129 Identities=24% Similarity=0.267 Sum_probs=95.9
Q ss_pred CCeeEEecCCccccccccCccccccccCCccCCCCC-CCCEEEccCCcCCCcccchhhhccCCC-----CCCCEEEccCC
Q 035976 62 RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFE-ELQSLDLSLNAFEGFYENRAYDSNGSL-----KQLKILNLEAN 135 (203)
Q Consensus 62 ~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~~l~~l-----~~L~~L~L~~n 135 (203)
..++.|+++++ .+.+...... ...+..++ +|++|++++|.+++..+. .+..+ ++|++|++++|
T Consensus 22 ~~L~~L~Ls~n---~l~~~~~~~l----~~~l~~~~~~L~~L~Ls~N~l~~~~~~----~l~~~l~~~~~~L~~L~Ls~n 90 (362)
T 3goz_A 22 HGVTSLDLSLN---NLYSISTVEL----IQAFANTPASVTSLNLSGNSLGFKNSD----ELVQILAAIPANVTSLNLSGN 90 (362)
T ss_dssp TTCCEEECTTS---CGGGSCHHHH----HHHHHTCCTTCCEEECCSSCGGGSCHH----HHHHHHHTSCTTCCEEECCSS
T ss_pred CCceEEEccCC---CCChHHHHHH----HHHHHhCCCceeEEECcCCCCCHHHHH----HHHHHHhccCCCccEEECcCC
Confidence 45889999888 6665411000 15667788 899999999999886554 44443 89999999999
Q ss_pred CCCCCChhhh----cCC-CCCcEEeccCCCCCCCcchhh----hCC-CCCCcEEEEe---------------cCCCC-CC
Q 035976 136 HFNDSILPYL----NTL-ISLTTLILRENNIEGSRTIEG----LSN-LRNLQLLDLR---------------LANLT-NL 189 (203)
Q Consensus 136 ~l~~~~p~~~----~~l-~~L~~L~L~~N~l~~~lp~~~----~~~-l~~L~~L~l~---------------~~~l~-~L 189 (203)
.+++..+..+ ..+ ++|+.|++++|++++ .+... +.. ..+|++|+++ +..++ +|
T Consensus 91 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 169 (362)
T 3goz_A 91 FLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS-KSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANV 169 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG-SCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cCChHHHHHHHHHHHhCCCCccEEECcCCcCCc-HHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccc
Confidence 9997776644 444 899999999999987 44333 334 3699999998 23444 89
Q ss_pred CEEEccCCCCCcC
Q 035976 190 KTLDLRDCGITTI 202 (203)
Q Consensus 190 ~~L~L~~N~l~~i 202 (203)
++|+|++|+|++.
T Consensus 170 ~~L~Ls~n~l~~~ 182 (362)
T 3goz_A 170 NSLNLRGNNLASK 182 (362)
T ss_dssp CEEECTTSCGGGS
T ss_pred cEeeecCCCCchh
Confidence 9999999999764
No 133
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.08 E-value=1.3e-09 Score=95.63 Aligned_cols=68 Identities=19% Similarity=0.229 Sum_probs=37.4
Q ss_pred CCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe----------cCCCCCCCEEEc
Q 035976 125 KQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR----------LANLTNLKTLDL 194 (203)
Q Consensus 125 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~----------~~~l~~L~~L~L 194 (203)
++|++|++++|.+++ +| ..+++|+.|++++|+++. +|. .+++|+.|+++ +..+++|+.|+|
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~----~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM----LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNL 291 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEEC
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc----ccccCcEEeCCCCCCCcCCHHHhhccccCEEEe
Confidence 445555555555553 33 234555566666665554 542 34556666665 455566666666
Q ss_pred cCCCCCc
Q 035976 195 RDCGITT 201 (203)
Q Consensus 195 ~~N~l~~ 201 (203)
++|.|++
T Consensus 292 ~~N~l~~ 298 (622)
T 3g06_A 292 EGNPLSE 298 (622)
T ss_dssp CSCCCCH
T ss_pred cCCCCCC
Confidence 6666654
No 134
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.05 E-value=4.5e-10 Score=91.60 Aligned_cols=102 Identities=23% Similarity=0.249 Sum_probs=80.8
Q ss_pred CCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChh-hhcCCCCCcE-EeccCCCCCCCcchhhhCCCC
Q 035976 97 EELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILP-YLNTLISLTT-LILRENNIEGSRTIEGLSNLR 174 (203)
Q Consensus 97 ~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~-L~L~~N~l~~~lp~~~~~~l~ 174 (203)
+++++|+|++|+++. +|.. .|.++++|++|+|++|++.+.+|. .|..++++.. +.+..|+++. +++..|..++
T Consensus 30 ~~l~~L~Ls~N~i~~-i~~~---~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~-l~~~~f~~l~ 104 (350)
T 4ay9_X 30 RNAIELRFVLTKLRV-IQKG---AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY-INPEAFQNLP 104 (350)
T ss_dssp TTCSEEEEESCCCSE-ECTT---SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE-ECTTSBCCCT
T ss_pred CCCCEEEccCCcCCC-cCHH---HHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc-cCchhhhhcc
Confidence 589999999999998 5541 688999999999999998766654 5788888765 6677899998 7766899999
Q ss_pred CCcEEEEe-----------cCCCCCCCEEEccC-CCCCcCC
Q 035976 175 NLQLLDLR-----------LANLTNLKTLDLRD-CGITTIQ 203 (203)
Q Consensus 175 ~L~~L~l~-----------~~~l~~L~~L~L~~-N~l~~ip 203 (203)
+|++|+++ +....++..|++.+ |++..+|
T Consensus 105 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~ 145 (350)
T 4ay9_X 105 NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE 145 (350)
T ss_dssp TCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEEC
T ss_pred ccccccccccccccCCchhhcccchhhhhhhcccccccccc
Confidence 99999998 33444667888865 5666553
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.92 E-value=8.3e-09 Score=83.31 Aligned_cols=78 Identities=19% Similarity=0.126 Sum_probs=68.4
Q ss_pred CCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCc-EEEEe----------cCCCCCCCEE
Q 035976 124 LKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQ-LLDLR----------LANLTNLKTL 192 (203)
Q Consensus 124 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~-~L~l~----------~~~l~~L~~L 192 (203)
+++|+.++++.|.++...+..|..+.+|+.+++.+| ++. ++...|..+.+|+ .+++. |..+++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~-I~~~aF~~~~~L~~~l~l~~~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKT-IGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCE-ECTTTTTTCTTCCEEEEECTTCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cce-ehHHHhhCChhccEEEEEcccceEEchhhhhCCccCCEE
Confidence 678999999999998555567899999999999998 776 8888899999999 99986 8899999999
Q ss_pred EccCCCCCcCC
Q 035976 193 DLRDCGITTIQ 203 (203)
Q Consensus 193 ~L~~N~l~~ip 203 (203)
+++.|+++.|+
T Consensus 303 ~l~~n~i~~I~ 313 (329)
T 3sb4_A 303 LATGDKITTLG 313 (329)
T ss_dssp EECSSCCCEEC
T ss_pred EeCCCccCccc
Confidence 99999988764
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.92 E-value=6.5e-11 Score=99.43 Aligned_cols=75 Identities=24% Similarity=0.218 Sum_probs=36.8
Q ss_pred CCCCEEEccCCCCCCC----ChhhhcCCCCCcEEeccCCCCCCCcchhhhC-----CCCCCcEEEEe-------------
Q 035976 125 KQLKILNLEANHFNDS----ILPYLNTLISLTTLILRENNIEGSRTIEGLS-----NLRNLQLLDLR------------- 182 (203)
Q Consensus 125 ~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~-----~l~~L~~L~l~------------- 182 (203)
++|++|++++|.+++. ++..+..+++|+.|++++|.+++..+. .+. ..++|++|+++
T Consensus 313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~-~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 391 (461)
T 1z7x_W 313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR-ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA 391 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH-HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH-HHHHHHcCCCCceEEEECCCCCCChhhHHHHH
Confidence 3455555555555432 233344455566666666655541111 121 14556666655
Q ss_pred --cCCCCCCCEEEccCCCCC
Q 035976 183 --LANLTNLKTLDLRDCGIT 200 (203)
Q Consensus 183 --~~~l~~L~~L~L~~N~l~ 200 (203)
+..+++|++|++++|+|+
T Consensus 392 ~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 392 ATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHHHCCCCCEEECCSSSCC
T ss_pred HHHHhCCCccEEECCCCCCC
Confidence 233556666666666654
No 137
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.90 E-value=2.2e-10 Score=96.13 Aligned_cols=102 Identities=23% Similarity=0.218 Sum_probs=69.6
Q ss_pred CCCCCCCEEEccCCcCCCc----ccchhhhccCCCCCCCEEEccCCCCCCCChhhhc-----CCCCCcEEeccCCCCCCC
Q 035976 94 HPFEELQSLDLSLNAFEGF----YENRAYDSNGSLKQLKILNLEANHFNDSILPYLN-----TLISLTTLILRENNIEGS 164 (203)
Q Consensus 94 ~~l~~L~~L~L~~N~l~~~----~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~-----~l~~L~~L~L~~N~l~~~ 164 (203)
..+++|++|++++|.++.. ++. .+..+++|++|++++|.+++..+..+. ..++|+.|++++|.+++.
T Consensus 253 ~~~~~L~~L~L~~n~l~~~~~~~l~~----~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 328 (461)
T 1z7x_W 253 HPSSRLRTLWIWECGITAKGCGDLCR----VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA 328 (461)
T ss_dssp STTCCCCEEECTTSCCCHHHHHHHHH----HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred cCCCCceEEECcCCCCCHHHHHHHHH----HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchH
Confidence 3567777777777777653 333 455677788888888877643333332 235788888888887752
Q ss_pred ----cchhhhCCCCCCcEEEEe---------------cC-CCCCCCEEEccCCCCC
Q 035976 165 ----RTIEGLSNLRNLQLLDLR---------------LA-NLTNLKTLDLRDCGIT 200 (203)
Q Consensus 165 ----lp~~~~~~l~~L~~L~l~---------------~~-~l~~L~~L~L~~N~l~ 200 (203)
++. .+..+++|++|+++ +. ..++|+.|+|++|+|+
T Consensus 329 ~~~~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 329 CCSHFSS-VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp GHHHHHH-HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred HHHHHHH-HHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence 232 56677889999887 11 2678999999999887
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.84 E-value=2.5e-10 Score=94.13 Aligned_cols=129 Identities=20% Similarity=0.178 Sum_probs=86.8
Q ss_pred CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhcc-CCCCCCCEEEccCCCCCCC
Q 035976 62 RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSN-GSLKQLKILNLEANHFNDS 140 (203)
Q Consensus 62 ~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l-~~l~~L~~L~L~~n~l~~~ 140 (203)
..++.++|+++ .+....+ ......+++|++|+|++|.++..........+ ...++|++|+|++|.++..
T Consensus 101 ~~L~~L~Ls~n---~l~~~~~-------~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~ 170 (372)
T 3un9_A 101 HALDEVNLASC---QLDPAGL-------RTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAA 170 (372)
T ss_dssp SCEEEEECTTC---CCCHHHH-------HHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHH
T ss_pred CCceEEEecCC---CCCHHHH-------HHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChH
Confidence 35777777777 5543211 11122345788999999988763322101122 3567899999999998642
Q ss_pred ----ChhhhcCCCCCcEEeccCCCCCCC----cchhhhCCCCCCcEEEEe---------------cCCCCCCCEEEccCC
Q 035976 141 ----ILPYLNTLISLTTLILRENNIEGS----RTIEGLSNLRNLQLLDLR---------------LANLTNLKTLDLRDC 197 (203)
Q Consensus 141 ----~p~~~~~l~~L~~L~L~~N~l~~~----lp~~~~~~l~~L~~L~l~---------------~~~l~~L~~L~L~~N 197 (203)
++..+...++|++|+|++|.++.. ++ ..+...++|+.|+|+ +...++|++|+|++|
T Consensus 171 ~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~-~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 171 GVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLA-AQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp HHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHH-HHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred HHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHH-HHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 334557788999999999998751 22 246677899999998 334578999999999
Q ss_pred CCCc
Q 035976 198 GITT 201 (203)
Q Consensus 198 ~l~~ 201 (203)
.|+.
T Consensus 250 ~i~~ 253 (372)
T 3un9_A 250 ELSS 253 (372)
T ss_dssp SCCH
T ss_pred CCCH
Confidence 9864
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.66 E-value=1.3e-09 Score=89.87 Aligned_cols=129 Identities=17% Similarity=0.131 Sum_probs=89.7
Q ss_pred CCeeEEecCCccccccccCccccccccCCccCC-CCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCC
Q 035976 62 RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFH-PFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDS 140 (203)
Q Consensus 62 ~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~ 140 (203)
..+..++++++ .++....... ...+. ..++|++|+|++|.++...... -...+++|+.|+|++|.++..
T Consensus 72 ~~L~~L~Ls~n---~l~~~~~~~l----~~~L~~~~~~L~~L~Ls~n~l~~~~~~~---l~~~L~~L~~L~Ls~n~l~~~ 141 (372)
T 3un9_A 72 SSLRQLNLAGV---RMTPVKCTVV----AAVLGSGRHALDEVNLASCQLDPAGLRT---LLPVFLRARKLGLQLNSLGPE 141 (372)
T ss_dssp TTCCEEECTTS---CCCHHHHHHH----HHHHSSCSSCEEEEECTTCCCCHHHHHH---THHHHHTEEEEECCSSCCCHH
T ss_pred hhCCEEEecCC---CCCHHHHHHH----HHHHhhCCCCceEEEecCCCCCHHHHHH---HHHHHHhccHhhcCCCCCCHH
Confidence 35778888887 6544311111 11122 3368999999999987632221 122356899999999999854
Q ss_pred Chhhh-----cCCCCCcEEeccCCCCCC----CcchhhhCCCCCCcEEEEe---------------cCCCCCCCEEEccC
Q 035976 141 ILPYL-----NTLISLTTLILRENNIEG----SRTIEGLSNLRNLQLLDLR---------------LANLTNLKTLDLRD 196 (203)
Q Consensus 141 ~p~~~-----~~l~~L~~L~L~~N~l~~----~lp~~~~~~l~~L~~L~l~---------------~~~l~~L~~L~L~~ 196 (203)
....+ ...+.|+.|+|++|.++. .++. .+...++|++|+|+ +...++|+.|+|++
T Consensus 142 ~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~-~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~ 220 (372)
T 3un9_A 142 ACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLME-GLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAY 220 (372)
T ss_dssp HHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHH-HHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCS
T ss_pred HHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHH-HHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCC
Confidence 43433 356889999999999975 1222 45778999999998 46678999999999
Q ss_pred CCCCc
Q 035976 197 CGITT 201 (203)
Q Consensus 197 N~l~~ 201 (203)
|.|+.
T Consensus 221 N~i~~ 225 (372)
T 3un9_A 221 NGAGD 225 (372)
T ss_dssp SCCCH
T ss_pred CCCCH
Confidence 99874
No 140
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.64 E-value=2.5e-08 Score=78.53 Aligned_cols=80 Identities=28% Similarity=0.237 Sum_probs=56.4
Q ss_pred CCCCCCEEEccCCcCCC--cccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCC--CCcEEeccCCCCCCCcch---
Q 035976 95 PFEELQSLDLSLNAFEG--FYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLI--SLTTLILRENNIEGSRTI--- 167 (203)
Q Consensus 95 ~l~~L~~L~L~~N~l~~--~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~--~L~~L~L~~N~l~~~lp~--- 167 (203)
.+++|++|+|++|.+++ .+|. .+..+++|+.|+|++|++++. ..+..+. +|+.|+|++|.+.+.+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~----~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~ 241 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSS----IVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQST 241 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTT----HHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHH
T ss_pred hCCCCCEEECCCCCCCCCccchh----HHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchh
Confidence 47788888888888887 2333 455788888888888888853 2333333 888888888888765541
Q ss_pred ---hhhCCCCCCcEEE
Q 035976 168 ---EGLSNLRNLQLLD 180 (203)
Q Consensus 168 ---~~~~~l~~L~~L~ 180 (203)
..+..+++|+.||
T Consensus 242 y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 242 YISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHCTTCCEES
T ss_pred HHHHHHHHCcccCeEC
Confidence 1356677777765
No 141
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.60 E-value=1.8e-08 Score=74.94 Aligned_cols=107 Identities=18% Similarity=0.124 Sum_probs=59.6
Q ss_pred CCCCCCCCEEEccCC-cCCCcccchhhhccCCCCCCCEEEccCCCCCCC----ChhhhcCCCCCcEEeccCCCCCCC---
Q 035976 93 FHPFEELQSLDLSLN-AFEGFYENRAYDSNGSLKQLKILNLEANHFNDS----ILPYLNTLISLTTLILRENNIEGS--- 164 (203)
Q Consensus 93 ~~~l~~L~~L~L~~N-~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~--- 164 (203)
+...+.|++|+|++| .+...-.......+...++|++|+|++|.+... +...+...+.|+.|+|++|.++..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 344566666666666 655321111111345556666666666666532 222334445666666666666541
Q ss_pred -cchhhhCCCCCCcEEEE--e---------------cCCCCCCCEEEccCCCCC
Q 035976 165 -RTIEGLSNLRNLQLLDL--R---------------LANLTNLKTLDLRDCGIT 200 (203)
Q Consensus 165 -lp~~~~~~l~~L~~L~l--~---------------~~~l~~L~~L~L~~N~l~ 200 (203)
+. ..+...++|++|++ + +...++|+.|+|++|.|.
T Consensus 112 ~l~-~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 112 ALV-EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHH-HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHH-HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 12 13445556666666 3 445578889999888764
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.55 E-value=2.2e-07 Score=74.85 Aligned_cols=84 Identities=17% Similarity=0.055 Sum_probs=45.9
Q ss_pred CccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCC-EEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchh
Q 035976 90 FSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLK-ILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIE 168 (203)
Q Consensus 90 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~-~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~ 168 (203)
...|.++++|+.+++.+| ++. ++.. .|.++++|+ .+++.. .++...+..|..+++|+.+++..|.++. ++..
T Consensus 243 ~~aF~~~~~L~~l~l~~n-i~~-I~~~---aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~-I~~~ 315 (329)
T 3sb4_A 243 DFTFAQKKYLLKIKLPHN-LKT-IGQR---VFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITT-LGDE 315 (329)
T ss_dssp TTTTTTCTTCCEEECCTT-CCE-ECTT---TTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCE-ECTT
T ss_pred HhhhhCCCCCCEEECCcc-cce-ehHH---HhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCc-cchh
Confidence 445556666666666555 444 3321 455555665 666655 4443334555566666666666666555 5544
Q ss_pred hhCCCCCCcEEE
Q 035976 169 GLSNLRNLQLLD 180 (203)
Q Consensus 169 ~~~~l~~L~~L~ 180 (203)
.|.++++|+.++
T Consensus 316 aF~~~~~L~~ly 327 (329)
T 3sb4_A 316 LFGNGVPSKLIY 327 (329)
T ss_dssp TTCTTCCCCEEE
T ss_pred hhcCCcchhhhc
Confidence 555555555554
No 143
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.54 E-value=3.8e-09 Score=83.16 Aligned_cols=58 Identities=22% Similarity=0.312 Sum_probs=43.6
Q ss_pred CCCCCCCEEEccCCCCCC--CChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCC--CCcEEEEe
Q 035976 122 GSLKQLKILNLEANHFND--SILPYLNTLISLTTLILRENNIEGSRTIEGLSNLR--NLQLLDLR 182 (203)
Q Consensus 122 ~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~--~L~~L~l~ 182 (203)
..+++|+.|+|++|++++ .+|..+..+++|+.|+|++|++++ +. .+..+. +|++|+|+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~-~~--~l~~l~~l~L~~L~L~ 228 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-ER--ELDKIKGLKLEELWLD 228 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS-GG--GGGGGTTSCCSEEECT
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC-ch--hhhhcccCCcceEEcc
Confidence 468899999999999997 345667789999999999999998 53 233333 44444443
No 144
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.51 E-value=1.4e-08 Score=87.80 Aligned_cols=81 Identities=14% Similarity=0.085 Sum_probs=56.3
Q ss_pred CCCCCCEEEccCCcCCCc----ccchhhhccCCCCCCCEEEccCCCCCCC----ChhhhcCCCCCcEEeccCCCCCCCcc
Q 035976 95 PFEELQSLDLSLNAFEGF----YENRAYDSNGSLKQLKILNLEANHFNDS----ILPYLNTLISLTTLILRENNIEGSRT 166 (203)
Q Consensus 95 ~l~~L~~L~L~~N~l~~~----~p~~~~~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~lp 166 (203)
.+++|++|++++|.+++. ++. .+..+++|++|+++.|.+++. ++..+..+++|+.|++++|.+.+ ++
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~----~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~ 236 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHE----LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LV 236 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHH----HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GH
T ss_pred hCCCCCEEECccccccCcchhHHHH----HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HH
Confidence 578888888888887654 222 334578888888888888632 33445677888888888887776 66
Q ss_pred hhhhCCCCCCcEEEE
Q 035976 167 IEGLSNLRNLQLLDL 181 (203)
Q Consensus 167 ~~~~~~l~~L~~L~l 181 (203)
. .+..+++|+.|++
T Consensus 237 ~-~~~~~~~L~~L~l 250 (592)
T 3ogk_B 237 G-FFKAAANLEEFCG 250 (592)
T ss_dssp H-HHHHCTTCCEEEE
T ss_pred H-HHhhhhHHHhhcc
Confidence 3 5666666666666
No 145
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.35 E-value=5.4e-07 Score=77.76 Aligned_cols=73 Identities=18% Similarity=0.102 Sum_probs=48.8
Q ss_pred CCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe-----------cCCCCCCC
Q 035976 122 GSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-----------LANLTNLK 190 (203)
Q Consensus 122 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~-----------~~~l~~L~ 190 (203)
..+++|+.++++.+.. ..+|..+..+++|+.|++++|.+++......+..+++|++|+++ ...+++|+
T Consensus 267 ~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~ 345 (592)
T 3ogk_B 267 VFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLK 345 (592)
T ss_dssp CCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCC
T ss_pred hccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCC
Confidence 3444455555544322 24566677788899999998887652222246788899998886 35677888
Q ss_pred EEEcc
Q 035976 191 TLDLR 195 (203)
Q Consensus 191 ~L~L~ 195 (203)
.|+|+
T Consensus 346 ~L~L~ 350 (592)
T 3ogk_B 346 RLRIE 350 (592)
T ss_dssp EEEEE
T ss_pred EEEee
Confidence 88888
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.16 E-value=9.7e-06 Score=67.32 Aligned_cols=80 Identities=14% Similarity=0.061 Sum_probs=58.1
Q ss_pred ccCCCCCCCEEEccCCCCC-----CCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe----------cC
Q 035976 120 SNGSLKQLKILNLEANHFN-----DSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR----------LA 184 (203)
Q Consensus 120 ~l~~l~~L~~L~L~~n~l~-----~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~----------~~ 184 (203)
.|..+++|+.+.+..|.+. ...+..|..+++|+.+.+. +.++. ++...|..+.+|+.+.+. |.
T Consensus 266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~-I~~~aF~~c~~L~~l~lp~~l~~I~~~aF~ 343 (401)
T 4fdw_A 266 AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRI-LGQGLLGGNRKVTQLTIPANVTQINFSAFN 343 (401)
T ss_dssp TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCE-ECTTTTTTCCSCCEEEECTTCCEECTTSSS
T ss_pred HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEE-EhhhhhcCCCCccEEEECccccEEcHHhCC
Confidence 5667778888888776654 2334567778888888887 44665 666678888888888875 77
Q ss_pred CCCCCCEEEccCCCCCcC
Q 035976 185 NLTNLKTLDLRDCGITTI 202 (203)
Q Consensus 185 ~l~~L~~L~L~~N~l~~i 202 (203)
.+ +|+.+++.+|.+..+
T Consensus 344 ~~-~L~~l~l~~n~~~~l 360 (401)
T 4fdw_A 344 NT-GIKEVKVEGTTPPQV 360 (401)
T ss_dssp SS-CCCEEEECCSSCCBC
T ss_pred CC-CCCEEEEcCCCCccc
Confidence 77 888888888876554
No 147
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.10 E-value=6e-07 Score=77.41 Aligned_cols=76 Identities=21% Similarity=0.345 Sum_probs=38.8
Q ss_pred CCCCCCEEEccCCCCCCCChhhhcC-CCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe------------cCCCCCC
Q 035976 123 SLKQLKILNLEANHFNDSILPYLNT-LISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR------------LANLTNL 189 (203)
Q Consensus 123 ~l~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~------------~~~l~~L 189 (203)
.+++|+.|++++ .+++..+..+.. +++|+.|++++|.+++.........+++|++|+++ ...+++|
T Consensus 430 ~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L 508 (594)
T 2p1m_B 430 HCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETM 508 (594)
T ss_dssp HCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGS
T ss_pred hCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCC
Confidence 344555555543 333333333333 55666666666666542221112446666666665 2345666
Q ss_pred CEEEccCCCC
Q 035976 190 KTLDLRDCGI 199 (203)
Q Consensus 190 ~~L~L~~N~l 199 (203)
+.|++++|++
T Consensus 509 ~~L~l~~~~~ 518 (594)
T 2p1m_B 509 RSLWMSSCSV 518 (594)
T ss_dssp SEEEEESSCC
T ss_pred CEEeeeCCCC
Confidence 7777766665
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.05 E-value=2.6e-05 Score=64.77 Aligned_cols=102 Identities=13% Similarity=0.097 Sum_probs=58.5
Q ss_pred cCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcch
Q 035976 88 MNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTI 167 (203)
Q Consensus 88 ~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~ 167 (203)
+....|.++++|+.+++..|.++. ++.. .|. ..+|+.+.+..+ ++..-...|..+++|+.+++..| ++. ++.
T Consensus 171 I~~~aF~~c~~L~~l~l~~n~l~~-I~~~---aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~-I~~ 242 (401)
T 4fdw_A 171 LKEDIFYYCYNLKKADLSKTKITK-LPAS---TFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VST-IGQ 242 (401)
T ss_dssp ECSSTTTTCTTCCEEECTTSCCSE-ECTT---TTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCE-ECT
T ss_pred ehHHHhhCcccCCeeecCCCcceE-echh---hEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccC-ccc
Confidence 345678888888888888888776 5542 333 466777777633 44333455666667777776653 332 333
Q ss_pred hhhCCCCCCcEEEEe----------cCCCCCCCEEEccCCC
Q 035976 168 EGLSNLRNLQLLDLR----------LANLTNLKTLDLRDCG 198 (203)
Q Consensus 168 ~~~~~l~~L~~L~l~----------~~~l~~L~~L~L~~N~ 198 (203)
..|.. .+|+.+.+. |..+++|+.+++.+|.
T Consensus 243 ~aF~~-~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~ 282 (401)
T 4fdw_A 243 EAFRE-SGITTVKLPNGVTNIASRAFYYCPELAEVTTYGST 282 (401)
T ss_dssp TTTTT-CCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSC
T ss_pred ccccc-CCccEEEeCCCccEEChhHhhCCCCCCEEEeCCcc
Confidence 34444 344444443 4444555555544443
No 149
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.98 E-value=6.4e-06 Score=60.64 Aligned_cols=63 Identities=14% Similarity=0.156 Sum_probs=30.5
Q ss_pred CCCCCCCCEEEccCCc-CCCcccchhhhccCCC----CCCCEEEccCCC-CCCCChhhhcCCCCCcEEeccCC
Q 035976 93 FHPFEELQSLDLSLNA-FEGFYENRAYDSNGSL----KQLKILNLEANH-FNDSILPYLNTLISLTTLILREN 159 (203)
Q Consensus 93 ~~~l~~L~~L~L~~N~-l~~~~p~~~~~~l~~l----~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~N 159 (203)
+.++++|++|+|+++. ++.. +...+..+ ++|++|+++++. +++.--..+..+++|+.|++++.
T Consensus 81 L~~~~~L~~L~L~~C~~ItD~----gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 81 MEGLQYVEKIRLCKCHYIEDG----CLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL 149 (176)
T ss_dssp GTTCSCCCEEEEESCTTCCHH----HHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESC
T ss_pred hcCCCCCCEEEeCCCCccCHH----HHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCC
Confidence 3455566666666553 4431 11133332 245666665543 54333334455555666666555
No 150
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.96 E-value=1.3e-06 Score=75.28 Aligned_cols=65 Identities=22% Similarity=0.266 Sum_probs=33.2
Q ss_pred CCCCCCEEEccCCcCCCcccchhhhccC-CCCCCCEEEccCC-CCCCC-ChhhhcCCCCCcEEeccCCCCCC
Q 035976 95 PFEELQSLDLSLNAFEGFYENRAYDSNG-SLKQLKILNLEAN-HFNDS-ILPYLNTLISLTTLILRENNIEG 163 (203)
Q Consensus 95 ~l~~L~~L~L~~N~l~~~~p~~~~~~l~-~l~~L~~L~L~~n-~l~~~-~p~~~~~l~~L~~L~L~~N~l~~ 163 (203)
.+++|++|++++|.+++..+. .+. .+++|++|++++| .++.. ++..+..+++|+.|++++|.+++
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~----~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~ 170 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLE----LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDD 170 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHH----HHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEEC
T ss_pred hCCCCCeEEeeCcEEcHHHHH----HHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCC
Confidence 355666666666665554333 332 3556666666655 33321 22223355566666666655543
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.77 E-value=2.2e-05 Score=57.72 Aligned_cols=81 Identities=22% Similarity=0.326 Sum_probs=61.5
Q ss_pred CCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCC-CCCCChhhhcCC----CCCcEEeccCCC-CCCCcchhhh
Q 035976 97 EELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANH-FNDSILPYLNTL----ISLTTLILRENN-IEGSRTIEGL 170 (203)
Q Consensus 97 ~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~l----~~L~~L~L~~N~-l~~~lp~~~~ 170 (203)
..|+.||++++.++.. ++..+..+++|++|+|+++. +++.--..+..+ ++|+.|+|+++. ++. -....+
T Consensus 61 ~~L~~LDLs~~~Itd~----GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD-~Gl~~L 135 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSI----GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD-KGIIAL 135 (176)
T ss_dssp CCEEEEEEESCCCCGG----GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH-HHHHHG
T ss_pred ceEeEEeCcCCCccHH----HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH-HHHHHH
Confidence 4799999999987763 33378899999999999985 775544556664 479999999974 775 222356
Q ss_pred CCCCCCcEEEEe
Q 035976 171 SNLRNLQLLDLR 182 (203)
Q Consensus 171 ~~l~~L~~L~l~ 182 (203)
..+++|++|+++
T Consensus 136 ~~~~~L~~L~L~ 147 (176)
T 3e4g_A 136 HHFRNLKYLFLS 147 (176)
T ss_dssp GGCTTCCEEEEE
T ss_pred hcCCCCCEEECC
Confidence 778888888876
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.72 E-value=2.4e-05 Score=57.80 Aligned_cols=81 Identities=15% Similarity=0.092 Sum_probs=64.0
Q ss_pred ccCCCCCCCEEEccCC-CCCCC----ChhhhcCCCCCcEEeccCCCCCCC----cchhhhCCCCCCcEEEEe--------
Q 035976 120 SNGSLKQLKILNLEAN-HFNDS----ILPYLNTLISLTTLILRENNIEGS----RTIEGLSNLRNLQLLDLR-------- 182 (203)
Q Consensus 120 ~l~~l~~L~~L~L~~n-~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----lp~~~~~~l~~L~~L~l~-------- 182 (203)
.+...+.|++|+|++| .+... +...+...++|+.|+|++|.+... +.. .+...++|++|+|+
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~-~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAE-MLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHH-HHHHCSSCCEEECCSSCCCHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHH-HHHhCCCcCEEECcCCcCCHHH
Confidence 5677899999999999 88742 334567788999999999999751 222 45566899999998
Q ss_pred -------cCCCCCCCEEEc--cCCCCCc
Q 035976 183 -------LANLTNLKTLDL--RDCGITT 201 (203)
Q Consensus 183 -------~~~l~~L~~L~L--~~N~l~~ 201 (203)
+...++|++|+| ++|.|..
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~ 137 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGN 137 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCH
Confidence 666778999999 8898863
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.71 E-value=3.8e-05 Score=62.92 Aligned_cols=52 Identities=13% Similarity=0.196 Sum_probs=26.0
Q ss_pred CCCCcEEeccCCCCCCCcchhhh---CCCCCCcEEEEe---------------cCCCCCCCEEEccCCCCC
Q 035976 148 LISLTTLILRENNIEGSRTIEGL---SNLRNLQLLDLR---------------LANLTNLKTLDLRDCGIT 200 (203)
Q Consensus 148 l~~L~~L~L~~N~l~~~lp~~~~---~~l~~L~~L~l~---------------~~~l~~L~~L~L~~N~l~ 200 (203)
+++|+.|+|.+|.+....+. .+ ..+++|++|+|+ +..+++|+.|+|++|.|+
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~-~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVE-MFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHH-HHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCcCEEeCCCCCCchHHHH-HHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 45566666665555431211 11 234556666665 122455666666666554
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.62 E-value=1.4e-05 Score=65.58 Aligned_cols=102 Identities=19% Similarity=0.193 Sum_probs=68.0
Q ss_pred cCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhc--CCCCCcEEeccC--CCCCCC---
Q 035976 92 LFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLN--TLISLTTLILRE--NNIEGS--- 164 (203)
Q Consensus 92 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~L~~--N~l~~~--- 164 (203)
.+..+++|+.|.+++|.-.. ++ .+ .+++|+.|++..+.++......+. .+++|+.|+|+. |...+.
T Consensus 167 ll~~~P~L~~L~L~g~~~l~-l~-----~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~ 239 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLS-IG-----KK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDM 239 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCB-CC-----SC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCG
T ss_pred HHhcCCCCcEEEEeCCCCce-ec-----cc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhH
Confidence 44667899999998873111 33 22 278899999988887643333443 689999998853 222211
Q ss_pred --cchhhh--CCCCCCcEEEEe--------------cCCCCCCCEEEccCCCCCc
Q 035976 165 --RTIEGL--SNLRNLQLLDLR--------------LANLTNLKTLDLRDCGITT 201 (203)
Q Consensus 165 --lp~~~~--~~l~~L~~L~l~--------------~~~l~~L~~L~L~~N~l~~ 201 (203)
+.. .+ ..+++|++|++. ...+++|+.|+|+.|.|..
T Consensus 240 ~~l~~-~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 240 NVFRP-LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp GGTGG-GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred HHHHH-HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 111 22 357899999996 2357889999999998764
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.46 E-value=0.00064 Score=55.83 Aligned_cols=59 Identities=10% Similarity=0.115 Sum_probs=24.9
Q ss_pred cCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe
Q 035976 121 NGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR 182 (203)
Q Consensus 121 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~ 182 (203)
|.++.+|+.+.+..+ ++..-...|..+.+|+.+.+..+ ++. ++...|.++.+|+.+++.
T Consensus 307 F~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~-I~~~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 307 FAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTK-IPESAFSNCTALNNIEYS 365 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCB-CCGGGGTTCTTCCEEEES
T ss_pred ecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCE-EhHhHhhCCCCCCEEEEC
Confidence 334444444444332 22122233444455555544332 332 433445555555555444
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.41 E-value=0.00089 Score=54.98 Aligned_cols=102 Identities=13% Similarity=0.163 Sum_probs=79.3
Q ss_pred CCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchh
Q 035976 89 NFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIE 168 (203)
Q Consensus 89 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~ 168 (203)
....|.+...|+.+.+..+... +... .+.+++.|+.+.+. +.++..-...|..+.+|+.+.+..+ ++. +...
T Consensus 257 ~~~aF~~c~~L~~i~lp~~~~~--I~~~---aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~-I~~~ 328 (394)
T 4gt6_A 257 ETHAFDSCAYLASVKMPDSVVS--IGTG---AFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQ-ILDD 328 (394)
T ss_dssp CTTTTTTCSSCCEEECCTTCCE--ECTT---TTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCE-ECTT
T ss_pred ccceeeecccccEEecccccce--ecCc---ccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccE-ehHh
Confidence 3456788889999998765432 3331 67788999999996 4455344457889999999999865 665 7767
Q ss_pred hhCCCCCCcEEEEe----------cCCCCCCCEEEccCCC
Q 035976 169 GLSNLRNLQLLDLR----------LANLTNLKTLDLRDCG 198 (203)
Q Consensus 169 ~~~~l~~L~~L~l~----------~~~l~~L~~L~L~~N~ 198 (203)
.|..+.+|+.+.+. |..+++|+.+++.+|.
T Consensus 329 aF~~C~~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 329 AFAGCEQLERIAIPSSVTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TTTTCTTCCEEEECTTCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred HhhCCCCCCEEEECcccCEEhHhHhhCCCCCCEEEECCce
Confidence 89999999999986 8999999999998774
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.37 E-value=0.00059 Score=55.59 Aligned_cols=99 Identities=17% Similarity=0.170 Sum_probs=59.2
Q ss_pred ccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhh
Q 035976 91 SLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGL 170 (203)
Q Consensus 91 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~ 170 (203)
..+.....|+.+.+..+ ++. +... .+..+..|+.+.+..+ +...-...|..+.+|+.+.+.++.++. ++...|
T Consensus 234 ~~f~~~~~L~~i~lp~~-v~~-I~~~---aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~-I~~~aF 306 (379)
T 4h09_A 234 GAFYGMKALDEIAIPKN-VTS-IGSF---LLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIET-LEPRVF 306 (379)
T ss_dssp TTTTTCSSCCEEEECTT-CCE-ECTT---TTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCE-ECTTTT
T ss_pred ccccCCccceEEEcCCC-ccE-eCcc---ccceeehhcccccccc-ceeccccccccccccccccccccccce-ehhhhh
Confidence 44555666666666554 333 2221 4555666676666433 332223456667777777777766665 665667
Q ss_pred CCCCCCcEEEEe----------cCCCCCCCEEEccC
Q 035976 171 SNLRNLQLLDLR----------LANLTNLKTLDLRD 196 (203)
Q Consensus 171 ~~l~~L~~L~l~----------~~~l~~L~~L~L~~ 196 (203)
..+.+|+.+.+. |..+++|+.+.+..
T Consensus 307 ~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 307 MDCVKLSSVTLPTALKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TTCTTCCEEECCTTCCEECTTTTTTCTTCCCCCCCT
T ss_pred cCCCCCCEEEcCccccEEHHHHhhCCCCCCEEEECC
Confidence 777777777764 66667777666643
No 158
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.37 E-value=0.00049 Score=47.87 Aligned_cols=37 Identities=22% Similarity=0.226 Sum_probs=26.5
Q ss_pred CCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCC
Q 035976 98 ELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFN 138 (203)
Q Consensus 98 ~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~ 138 (203)
+|++|+|++|.|+. +|.. .|..+++|++|+|++|.+.
T Consensus 32 ~l~~L~Ls~N~l~~-l~~~---~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTA-LPPG---LLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSS-CCTT---TGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCc-cChh---hhhhccccCEEEecCCCee
Confidence 57788888888877 4431 5666777888888887764
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.29 E-value=0.00076 Score=55.40 Aligned_cols=60 Identities=13% Similarity=0.078 Sum_probs=28.3
Q ss_pred ccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe
Q 035976 120 SNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR 182 (203)
Q Consensus 120 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~ 182 (203)
.|.++.+|+.+++..+ ++..-...|.++.+|+.+.+..+ ++. ++...|..+.+|+.+++.
T Consensus 315 aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~-I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 315 AFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRK-IGANAFQGCINLKKVELP 374 (394)
T ss_dssp TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCE-ECTTTBTTCTTCCEEEEE
T ss_pred hhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccE-ehHHHhhCCCCCCEEEEC
Confidence 3444555555555422 33222334455555555555443 333 444455555555555554
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.22 E-value=0.00022 Score=53.34 Aligned_cols=67 Identities=13% Similarity=0.135 Sum_probs=32.0
Q ss_pred CCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCC----ChhhhcCCCCCcEEeccCC
Q 035976 93 FHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDS----ILPYLNTLISLTTLILREN 159 (203)
Q Consensus 93 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N 159 (203)
+..-+.|+.|+|++|.+...--......+..-+.|++|+|+.|.|+.. +...+..-+.|+.|+|++|
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 334456666666666655321110001233345566666666666532 1123334455666666544
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.77 E-value=0.0043 Score=50.86 Aligned_cols=75 Identities=15% Similarity=0.079 Sum_probs=55.5
Q ss_pred ccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe----------cCCCCCC
Q 035976 120 SNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR----------LANLTNL 189 (203)
Q Consensus 120 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~----------~~~l~~L 189 (203)
.+..+.+|+.+.+..+ ++..-...|..+.+|+.+++..+ ++. ++...|.++.+|+.+.+. |..+++|
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~-I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEE-IGKRSFRGCTSLSNINFPLSLRKIGANAFQGCINL 368 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCE-ECTTTTTTCTTCCEECCCTTCCEECTTTBTTCTTC
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccE-EhHHhccCCCCCCEEEECccccEehHHHhhCCCCC
Confidence 4556777888877654 44333456788889999998754 665 766788899999988875 8888899
Q ss_pred CEEEccCC
Q 035976 190 KTLDLRDC 197 (203)
Q Consensus 190 ~~L~L~~N 197 (203)
+.+++..+
T Consensus 369 ~~i~lp~~ 376 (394)
T 4fs7_A 369 KKVELPKR 376 (394)
T ss_dssp CEEEEEGG
T ss_pred CEEEECCC
Confidence 99988654
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.35 E-value=0.0097 Score=48.28 Aligned_cols=87 Identities=9% Similarity=0.117 Sum_probs=65.1
Q ss_pred CCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchh
Q 035976 89 NFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIE 168 (203)
Q Consensus 89 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~ 168 (203)
....|.+...|+.+.+..+ +.. ++.. .|..+++|+.+.+..+.++..-...|..+.+|+.+.+..+ ++. ++..
T Consensus 255 ~~~aF~~~~~l~~i~l~~~-i~~-i~~~---aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~-I~~~ 327 (379)
T 4h09_A 255 GSFLLQNCTALKTLNFYAK-VKT-VPYL---LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKT-IQVY 327 (379)
T ss_dssp CTTTTTTCTTCCEEEECCC-CSE-ECTT---TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCE-ECTT
T ss_pred Cccccceeehhcccccccc-cee-cccc---ccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccE-EHHH
Confidence 3566778888999888654 444 3331 6778899999999888887444567888999999999754 665 7666
Q ss_pred hhCCCCCCcEEEEe
Q 035976 169 GLSNLRNLQLLDLR 182 (203)
Q Consensus 169 ~~~~l~~L~~L~l~ 182 (203)
.|.++.+|+.+.+.
T Consensus 328 aF~~C~~L~~i~ip 341 (379)
T 4h09_A 328 AFKNCKALSTISYP 341 (379)
T ss_dssp TTTTCTTCCCCCCC
T ss_pred HhhCCCCCCEEEEC
Confidence 88899999888764
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.19 E-value=0.013 Score=40.48 Aligned_cols=56 Identities=18% Similarity=0.102 Sum_probs=43.8
Q ss_pred CEEEccCCcCC--CcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCC
Q 035976 100 QSLDLSLNAFE--GFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIE 162 (203)
Q Consensus 100 ~~L~L~~N~l~--~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 162 (203)
..++.+++.++ . +|. .+ .++|+.|+|++|+|+...+..|..+++|+.|+|.+|.+.
T Consensus 11 ~~v~Cs~~~L~~~~-vP~----~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWAS-LPT----AF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTT-SCS----CC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCcccc-CCC----CC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36778888887 4 665 33 346899999999999665667788999999999999875
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.22 E-value=0.023 Score=42.30 Aligned_cols=106 Identities=10% Similarity=0.088 Sum_probs=72.7
Q ss_pred CCCCCCCCEEEccCC-cCCCcccchhhhccCCCCCCCEEEccCCCCCCC----ChhhhcCCCCCcEEeccCCCCCCC---
Q 035976 93 FHPFEELQSLDLSLN-AFEGFYENRAYDSNGSLKQLKILNLEANHFNDS----ILPYLNTLISLTTLILRENNIEGS--- 164 (203)
Q Consensus 93 ~~~l~~L~~L~L~~N-~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~--- 164 (203)
+..-+.|++|+|++| .+...--......+..-+.|+.|+|++|++... +...+..-+.|+.|+|+.|.|...
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 455678999999986 765421111123567788999999999999743 334455668899999999999851
Q ss_pred -cchhhhCCCCCCcEEEEe------------------cCCCCCCCEEEccCCCC
Q 035976 165 -RTIEGLSNLRNLQLLDLR------------------LANLTNLKTLDLRDCGI 199 (203)
Q Consensus 165 -lp~~~~~~l~~L~~L~l~------------------~~~l~~L~~L~L~~N~l 199 (203)
+.. .+..-..|++|+|+ +..=+.|+.|+++.|.+
T Consensus 117 ala~-aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 117 RLLR-STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHH-HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHH-HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 221 34555678888883 22235688888877653
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=52.86 E-value=15 Score=23.54 Aligned_cols=45 Identities=13% Similarity=-0.041 Sum_probs=31.1
Q ss_pred CCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe
Q 035976 136 HFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR 182 (203)
Q Consensus 136 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~ 182 (203)
.++..-...|.++.+|+.+.+..+ ++. |....|..+.+|+.+.+.
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~-Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGL-LYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSC-CCTTSSTTCTTCCCEEEC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hhe-EcHHHHhccCCccEEEEc
Confidence 344334456788888888888764 343 555678888888888775
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=41.69 E-value=44 Score=21.26 Aligned_cols=42 Identities=19% Similarity=0.140 Sum_probs=28.5
Q ss_pred cCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccC
Q 035976 88 MNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEA 134 (203)
Q Consensus 88 ~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~ 134 (203)
+....|.++..|+.+.+..+ ++. +... .|.++.+|+.+.+..
T Consensus 11 I~~~aF~~c~~L~~i~iP~~-v~~-Ig~~---aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQPN-IGL-LYDG---MFSGCTALEKLILTG 52 (100)
T ss_dssp SCSCTTTTCTTCCCEEECTT-SSC-CCTT---SSTTCTTCCCEEECC
T ss_pred ecHHHhcCCCCCcEEEcCCc-hhe-EcHH---HHhccCCccEEEEcC
Confidence 34667888888888888765 344 3221 677788888887765
Done!