BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035977
(169 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WKO|A Chain A, Terminal Flower 1 (Tfl1) From Arabidopsis Thaliana
pdb|1WKO|B Chain B, Terminal Flower 1 (Tfl1) From Arabidopsis Thaliana
Length = 180
Score = 273 bits (699), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 128/170 (75%), Positives = 152/170 (89%), Gaps = 1/170 (0%)
Query: 1 MLEPLAVGGVIGDVIESFTPSIKMSVTYNNKQVCNGHELFPSTVVSKPRVEIQGGDMRSF 60
++EPL +G V+GDV++ FTP+ KM+V+YN KQV NGHELFPS+V SKPRVEI GGD+RSF
Sbjct: 11 VIEPLIMGRVVGDVLDFFTPTTKMNVSYNKKQVSNGHELFPSSVSSKPRVEIHGGDLRSF 70
Query: 61 FTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDATFGRELVSYEIPRPNIGIHRFVFVL 120
FTLVM DPDVPGPSDP+L+EHLHWIVT+IPGTTDATFG+E+VSYE+PRP+IGIHRFVFVL
Sbjct: 71 FTLVMIDPDVPGPSDPFLKEHLHWIVTNIPGTTDATFGKEVVSYELPRPSIGIHRFVFVL 130
Query: 121 FKQTRRQTVNPP-SSRDHFNTRAFAAENDLGLPVAAVYFNAQRETAARRR 169
F+Q +R+ + P SRDHFNTR FA E DLGLPVAAV+FNAQRETAAR+R
Sbjct: 131 FRQKQRRVIFPNIPSRDHFNTRKFAVEYDLGLPVAAVFFNAQRETAARKR 180
>pdb|1QOU|A Chain A, Cen (Centroradialis) Protein From Antirrhinum
pdb|1QOU|B Chain B, Cen (Centroradialis) Protein From Antirrhinum
Length = 181
Score = 262 bits (669), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 126/174 (72%), Positives = 146/174 (83%), Gaps = 7/174 (4%)
Query: 3 EPLAVGGVIGDVIESFTPSIKMSVTYNN----KQVCNGHELFPSTVVSKPRVEIQGGDMR 58
+PL +G VIGDV++ FT ++KMSV YN+ K V NGHELFPS V S PRVE+ GGDMR
Sbjct: 8 DPLVIGRVIGDVVDHFTSTVKMSVIYNSNNSIKHVYNGHELFPSAVTSTPRVEVHGGDMR 67
Query: 59 SFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDATFGRELVSYEIPRPNIGIHRFVF 118
SFFTL+MTDPDVPGPSDPYLREHLHWIVTDIPGTTD++FG+E+VSYE+PRPNIGIHRFVF
Sbjct: 68 SFFTLIMTDPDVPGPSDPYLREHLHWIVTDIPGTTDSSFGKEVVSYEMPRPNIGIHRFVF 127
Query: 119 VLFKQTRR--QTVNPP-SSRDHFNTRAFAAENDLGLPVAAVYFNAQRETAARRR 169
+LFKQ +R ++PP RD FNTR F EN+LGLPVAAV+FN QRETAARRR
Sbjct: 128 LLFKQKKRGQAMLSPPVVCRDGFNTRKFTQENELGLPVAAVFFNCQRETAARRR 181
>pdb|3AXY|A Chain A, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|B Chain B, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|G Chain G, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|H Chain H, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
Length = 170
Score = 213 bits (543), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 101/161 (62%), Positives = 124/161 (77%)
Query: 3 EPLAVGGVIGDVIESFTPSIKMSVTYNNKQVCNGHELFPSTVVSKPRVEIQGGDMRSFFT 62
+PL VG V+GDV+++F S + VTY +K V NG EL PS V +PRVE+ G DMR+F+T
Sbjct: 9 DPLVVGRVVGDVLDAFVRSTNLKVTYGSKTVSNGLELKPSMVTHQPRVEVGGNDMRTFYT 68
Query: 63 LVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDATFGRELVSYEIPRPNIGIHRFVFVLFK 122
LVM DPD P PSDP LRE+LHW+VTDIPGTT A+FG+E++SYE PRP +GIHR VFVLF+
Sbjct: 69 LVMVDPDAPSPSDPNLREYLHWLVTDIPGTTAASFGQEVMSYESPRPTMGIHRLVFVLFQ 128
Query: 123 QTRRQTVNPPSSRDHFNTRAFAAENDLGLPVAAVYFNAQRE 163
Q RQTV P R +FNT+ FA +LG PVAAVYFN+QRE
Sbjct: 129 QLGRQTVYAPGWRQNFNTKDFAELYNLGSPVAAVYFNSQRE 169
>pdb|1WKP|A Chain A, Flowering Locus T (Ft) From Arabidopsis Thaliana
pdb|1WKP|B Chain B, Flowering Locus T (Ft) From Arabidopsis Thaliana
pdb|1WKP|C Chain C, Flowering Locus T (Ft) From Arabidopsis Thaliana
pdb|1WKP|D Chain D, Flowering Locus T (Ft) From Arabidopsis Thaliana
Length = 171
Score = 204 bits (520), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 98/162 (60%), Positives = 122/162 (75%)
Query: 3 EPLAVGGVIGDVIESFTPSIKMSVTYNNKQVCNGHELFPSTVVSKPRVEIQGGDMRSFFT 62
+PL V V+GDV++ F SI + VTY ++V NG L PS V +KPRVEI G D+R+F+T
Sbjct: 10 DPLIVSRVVGDVLDPFNRSITLKVTYGQREVTNGLNLRPSQVQNKPRVEIGGEDLRNFYT 69
Query: 63 LVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDATFGRELVSYEIPRPNIGIHRFVFVLFK 122
LVM DPDVP PS+P+LRE+LHW+VTDIP TT TFG E+VSYE P P GIHR VF+LF+
Sbjct: 70 LVMVDPDVPSPSNPHLREYLHWLVTDIPATTGTTFGNEIVSYENPSPTAGIHRVVFILFR 129
Query: 123 QTRRQTVNPPSSRDHFNTRAFAAENDLGLPVAAVYFNAQRET 164
Q RQTV P R +FNTR FA +LGLPVAAV++N+QRE+
Sbjct: 130 QLGRQTVYAPGWRQNFNTREFAEIYNLGLPVAAVFYNSQRES 171
>pdb|2JYZ|A Chain A, Cg7054 Solution Structure
Length = 179
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 93/165 (56%), Gaps = 12/165 (7%)
Query: 10 VIGDVIESFTPSIKMSVTYNNK-QVCNGHELFPSTVVSKPRVEIQGGDMRS-FFTLVMTD 67
++ DV+++ P+ + V Y + +V G+EL P+ V +P V G + +S TL+M D
Sbjct: 4 IVPDVLDAV-PAGTIKVIYGDDLEVKQGNELTPTQVKDQPIVSWSGLEGKSNLLTLLMVD 62
Query: 68 PDVPGPSDPYLREHLHWIVTDIPGTTDA-TFGRELVSY--EIPRPNIGIHRFVFVLFKQT 124
PD P DP RE LHW V +IPG+ + + G L Y P + G+HR++F+L++Q
Sbjct: 63 PDAPTRQDPKYREILHWSVVNIPGSNENPSGGHSLADYVGSGPPKDTGLHRYIFLLYRQE 122
Query: 125 RRQTVNPPSS------RDHFNTRAFAAENDLGLPVAAVYFNAQRE 163
+ P S R +FN R FAA++ LG P+AA Y+ AQ +
Sbjct: 123 NKIEETPTISNTTRTGRLNFNARDFAAKHGLGEPIAANYYQAQYD 167
>pdb|2IQY|A Chain A, Rat Phosphatidylethanolamine-Binding Protein
Length = 190
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 71/140 (50%), Gaps = 11/140 (7%)
Query: 36 GHELFPSTVVSKPR-VEIQGGDMRSFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTD 94
G L P+ V+++P + G D +TLV+TDPD P DP RE H++V ++ G D
Sbjct: 41 GKVLTPTQVMNRPSSISWDGLDPGKLYTLVLTDPDAPSRKDPKFREWHHFLVVNMKG-ND 99
Query: 95 ATFGRELVSY--EIPRPNIGIHRFVFVLFKQTRRQTVNPP-------SSRDHFNTRAFAA 145
+ G L Y P + G+HR+V+++++Q + + P +R F +F
Sbjct: 100 ISSGTVLSEYVGSGPPKDTGLHRYVWLVYEQEQPLNCDEPILSNKSGDNRGKFKVESFRK 159
Query: 146 ENDLGLPVAAVYFNAQRETA 165
+ LG PVA F A+ + +
Sbjct: 160 KYHLGAPVAGTCFQAEWDDS 179
>pdb|1KN3|A Chain A, Murine Pebp-2 (Phosphatidylethanolamine-Binding Protein-2)
Length = 183
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 12/156 (7%)
Query: 20 PSIKMSVTYNNKQVCN-GHELFPSTVVSKP-RVEIQGGDMRSFFTLVMTDPDVPGPSDPY 77
P + VTY +V G L P+ V +P + G D +TL++TDPD P P
Sbjct: 17 PQHLLRVTYTEAEVEELGQVLTPTQVKHRPGSISWDGLDPGKLYTLILTDPDAPSRKKPV 76
Query: 78 LREHLHWIVTDIPGTTDATFGRELVSY--EIPRPNIGIHRFVFVLFKQTRRQTVNPP--- 132
RE H++V ++ G D + G L Y P G+HR+V+++++Q + + P
Sbjct: 77 YREWHHFLVVNMKG-NDISSGNVLSDYVGSGPPKGTGLHRYVWLVYQQDKPLRCDEPILT 135
Query: 133 -SSRDH---FNTRAFAAENDLGLPVAAVYFNAQRET 164
S DH F T AF + LG PVA + A+ ++
Sbjct: 136 NRSGDHRGKFKTAAFRKKYHLGAPVAGTCYQAEWDS 171
>pdb|2IQX|A Chain A, Rat Phosphatidylethanolamine-Binding Protein Containing
The S153e Mutation In The Complex With
O-Phosphorylethanolamine
pdb|2IQX|B Chain B, Rat Phosphatidylethanolamine-Binding Protein Containing
The S153e Mutation In The Complex With
O-Phosphorylethanolamine
pdb|2IQX|C Chain C, Rat Phosphatidylethanolamine-Binding Protein Containing
The S153e Mutation In The Complex With
O-Phosphorylethanolamine
Length = 187
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 11/140 (7%)
Query: 36 GHELFPSTVVSKPR-VEIQGGDMRSFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTD 94
G L P+ V+++P + G D +TLV+TDPD P DP RE H++V ++ G D
Sbjct: 38 GKVLTPTQVMNRPSSISWDGLDPGKLYTLVLTDPDAPSRKDPKFREWHHFLVVNMKG-ND 96
Query: 95 ATFGRELVSY--EIPRPNIGIHRFVFVLFKQTRRQTVNPP-------SSRDHFNTRAFAA 145
+ G L Y P + G+HR+V+++++Q + + P +R F F
Sbjct: 97 ISSGTVLSEYVGSGPPKDTGLHRYVWLVYEQEQPLNCDEPILSNKSGDNRGKFKVEEFRK 156
Query: 146 ENDLGLPVAAVYFNAQRETA 165
+ LG PVA F A+ + +
Sbjct: 157 KYHLGAPVAGTCFQAEWDDS 176
>pdb|1BD9|A Chain A, Human Phosphatidylethanolamine Binding Protein
pdb|1BD9|B Chain B, Human Phosphatidylethanolamine Binding Protein
pdb|1BEH|A Chain A, Human Phosphatidylethanolamine Binding Protein In Complex
With Cacodylate
pdb|1BEH|B Chain B, Human Phosphatidylethanolamine Binding Protein In Complex
With Cacodylate
pdb|2QYQ|A Chain A, Human Raf Kinase Inhibitor Protein (Rkip) In Complex With
O- Phosphotyrosine
pdb|2L7W|A Chain A, Solution Structure Of The Human Raf-1 Kinase Inhibitor
Protein
Length = 187
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 75/155 (48%), Gaps = 12/155 (7%)
Query: 20 PSIKMSVTYNNKQVCN-GHELFPSTVVSKP-RVEIQGGDMRSFFTLVMTDPDVPGPSDPY 77
P + VTY V G L P+ V ++P + G D +TLV+TDPD P DP
Sbjct: 21 PQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPK 80
Query: 78 LREHLHWIVTDIPGTTDATFGRELVSY--EIPRPNIGIHRFVFVLFKQTRRQTVNPP--- 132
RE H++V ++ G D + G L Y P G+HR+V+++++Q R + P
Sbjct: 81 YREWHHFLVVNMKG-NDISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQDRPLKCDEPILS 139
Query: 133 -SSRDH---FNTRAFAAENDLGLPVAAVYFNAQRE 163
S DH F +F + +L PVA + A+ +
Sbjct: 140 NRSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWD 174
>pdb|1B7A|A Chain A, Structure Of The Phosphatidylethanolamine-Binding Protein
From Bovine Brain
pdb|1B7A|B Chain B, Structure Of The Phosphatidylethanolamine-Binding Protein
From Bovine Brain
Length = 186
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 75/155 (48%), Gaps = 12/155 (7%)
Query: 20 PSIKMSVTYNNKQVCN-GHELFPSTVVSKP-RVEIQGGDMRSFFTLVMTDPDVPGPSDPY 77
P + V Y +V G L P+ V ++P + G D +TLV+TDPD P DP
Sbjct: 20 PQHPLQVKYGGAEVDELGKVLTPTQVKNRPTSITWDGLDPGKLYTLVLTDPDAPSRKDPK 79
Query: 78 LREHLHWIVTDIPGTTDATFGRELVSY--EIPRPNIGIHRFVFVLFKQTRRQTVNPP--- 132
RE H++V ++ G + + G L Y P G+HR+V+++++Q + P
Sbjct: 80 YREWHHFLVVNMKG-NNISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQEGPLKCDEPILS 138
Query: 133 -SSRDH---FNTRAFAAENDLGLPVAAVYFNAQRE 163
S DH F +F + +LG PVA + A+ +
Sbjct: 139 NRSGDHRGKFKVASFRKKYELGAPVAGTCYQAEWD 173
>pdb|1A44|A Chain A, Phosphatidylethanolamine Binding Protein From Calf Brain
Length = 185
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 75/155 (48%), Gaps = 12/155 (7%)
Query: 20 PSIKMSVTYNNKQVCN-GHELFPSTVVSKP-RVEIQGGDMRSFFTLVMTDPDVPGPSDPY 77
P + V Y +V G L P+ V ++P + G D +TLV+TDPD P DP
Sbjct: 20 PQHPLQVKYGGAEVDELGKVLTPTQVKNRPTSITWDGLDPGKLYTLVLTDPDAPSRKDPK 79
Query: 78 LREHLHWIVTDIPGTTDATFGRELVSY--EIPRPNIGIHRFVFVLFKQTRRQTVNPP--- 132
RE H++V ++ G + + G L Y P G+HR+V+++++Q + P
Sbjct: 80 YREWHHFLVVNMKG-NNISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQEGPLKCDEPILS 138
Query: 133 -SSRDH---FNTRAFAAENDLGLPVAAVYFNAQRE 163
S DH F +F + +LG PVA + A+ +
Sbjct: 139 NRSGDHRGKFKVASFRKKYELGAPVAGTCYQAEWD 173
>pdb|1WPX|B Chain B, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
Length = 220
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 67/157 (42%), Gaps = 43/157 (27%)
Query: 9 GVIGDVIE--SFTPSIKMSVTYNNKQ-VCNGHELFPSTVVSKPRVEI------------- 52
G++ DVI SF PS ++V Y++ V G+ L SKP+ +
Sbjct: 20 GILEDVIHDTSFQPSGILAVEYSSSAPVAMGNTLPTEKARSKPQFQFTFNKQMQKSVPQA 79
Query: 53 -----QGGDMRSFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDAT---------FG 98
Q D+ FTLVMTDPD P +D E H + D+ +AT F
Sbjct: 80 NAYVPQDDDL---FTLVMTDPDAPSKTDHKWSEFCHLVECDLKLLNEATHETSGATEFFA 136
Query: 99 RE--------LVSYEIPRP--NIGIHRFVFVLFKQTR 125
E L+ Y P P G HR+VF+L+KQ +
Sbjct: 137 SEFNTKGSNTLIEYMGPAPPKGSGPHRYVFLLYKQPK 173
>pdb|2R77|A Chain A, Crystal Structure Of Phosphatidylethanolamine-Binding
Protein, Pfl0955c, From Plasmodium Falciparum
Length = 205
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 61 FTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDATFGRE-----LVSYEIP--RPNIGI 113
F L M DPD P P +E++HW+V+ I T + G + ++ Y P + G+
Sbjct: 86 FVLFMVDPDYPSRLRPDGKEYIHWVVSGIK-TKELIKGTQKNCVTILPYVGPSIKKGTGL 144
Query: 114 HRFVFVL 120
HR F++
Sbjct: 145 HRISFII 151
>pdb|2GZQ|A Chain A, Phosphatidylethanolamine-Binding Protein From Plasmodium
Vivax
Length = 200
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 14/94 (14%)
Query: 61 FTLVMTDPDVPGPSDPYLREHLHWIVTDI------PGTTDATFGRELVSYEIP--RPNIG 112
+ L DPD P P R+++HW V+ I GT L+ Y P + G
Sbjct: 79 YILFXIDPDFPSRRRPDGRDYVHWAVSGIKSKELVKGTDKNCI--TLLPYVGPSIKKGTG 136
Query: 113 IHR--FVFVLFKQTRRQTVN--PPSSRDHFNTRA 142
+HR F+ L K+ + V P +H+ TR
Sbjct: 137 LHRISFILSLVKEENKGNVTGVPLYRGEHYITRV 170
>pdb|2WPG|A Chain A, Sucrose Hydrolase
Length = 637
Score = 28.1 bits (61), Expect = 2.5, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 7/63 (11%)
Query: 40 FPSTVVSKPRVEIQGGDMRSF-------FTLVMTDPDVPGPSDPYLREHLHWIVTDIPGT 92
P+ ++ + GD R F F V DVP P D H W V D GT
Sbjct: 555 LPALAATQSLGSVALGDARLFALTRGDSFLAVHNFSDVPLPVDLTQTGHALWAVLDTDGT 614
Query: 93 TDA 95
DA
Sbjct: 615 GDA 617
>pdb|3NNQ|A Chain A, Crystal Structure Of The N-Terminal Domain Of Moloney
Murine Leukemia Virus Integrase, Northeast Structural
Genomics Consortium Target Or3
pdb|3NNQ|B Chain B, Crystal Structure Of The N-Terminal Domain Of Moloney
Murine Leukemia Virus Integrase, Northeast Structural
Genomics Consortium Target Or3
Length = 114
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 74 SDPYLREHLHWIVTDIPGTT 93
S PY EH H+ VTDI T
Sbjct: 5 SSPYTSEHFHYTVTDIKDLT 24
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,335,977
Number of Sequences: 62578
Number of extensions: 218755
Number of successful extensions: 420
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 388
Number of HSP's gapped (non-prelim): 17
length of query: 169
length of database: 14,973,337
effective HSP length: 92
effective length of query: 77
effective length of database: 9,216,161
effective search space: 709644397
effective search space used: 709644397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)