Query 035977
Match_columns 169
No_of_seqs 127 out of 1079
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 08:12:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035977.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035977hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00169 CETS family protein; 100.0 1.9E-53 4.1E-58 327.3 18.7 168 2-169 6-173 (175)
2 KOG3346 Phosphatidylethanolami 100.0 7.8E-52 1.7E-56 318.5 13.8 168 2-169 5-178 (185)
3 cd00866 PEBP_euk PhosphatidylE 100.0 4.3E-39 9.3E-44 242.9 16.2 138 23-160 2-154 (154)
4 PF01161 PBP: Phosphatidyletha 100.0 1.8E-29 3.8E-34 188.7 12.1 129 22-159 2-146 (146)
5 cd00457 PEBP PhosphatidylEthan 99.9 1.4E-24 3E-29 165.1 12.7 122 32-159 6-158 (159)
6 cd00865 PEBP_bact_arch Phospha 99.7 6.2E-17 1.3E-21 121.9 11.0 94 45-148 25-137 (150)
7 PRK10257 putative kinase inhib 99.7 7.5E-17 1.6E-21 122.3 10.3 80 46-130 30-131 (158)
8 PRK09818 putative kinase inhib 99.7 2.2E-16 4.7E-21 122.4 10.5 100 24-130 22-154 (183)
9 TIGR00481 Raf kinase inhibitor 99.6 2E-15 4.3E-20 112.7 11.4 94 45-148 13-128 (141)
10 COG1881 Phospholipid-binding p 99.6 2.4E-15 5.2E-20 115.6 9.8 115 30-150 27-163 (174)
11 KOG3586 TBX1 and related T-box 40.1 39 0.00084 29.5 3.6 51 35-88 96-153 (437)
12 PRK04243 50S ribosomal protein 33.2 57 0.0012 25.7 3.3 28 59-89 128-155 (196)
13 PTZ00026 60S ribosomal protein 28.8 65 0.0014 25.5 3.0 27 59-88 128-154 (204)
14 PF01828 Peptidase_A4: Peptida 23.5 2E+02 0.0043 22.7 5.0 62 27-92 85-149 (208)
15 PF11995 DUF3490: Domain of un 21.1 29 0.00063 26.4 -0.2 17 113-129 21-38 (161)
No 1
>PLN00169 CETS family protein; Provisional
Probab=100.00 E-value=1.9e-53 Score=327.30 Aligned_cols=168 Identities=62% Similarity=1.033 Sum_probs=157.3
Q ss_pred CCCcccCCcccccCCCCCCCeeEEEEECCeeecCCcccCcccccCCCeEEEecCCCCceEEEEEeCCCCCCCCCCCCCeE
Q 035977 2 LEPLAVGGVIGDVIESFTPSIKMSVTYNNKQVCNGHELFPSTVVSKPRVEIQGGDMRSFFTLVMTDPDVPGPSDPYLREH 81 (169)
Q Consensus 2 ~~~l~~~~iipdv~~~f~P~~~L~V~y~~~~v~~G~~l~~~~t~~~P~i~~~~~~~~~~ytlimvDpD~p~~~~~~~~~~ 81 (169)
+++|++++||||||+.|.|+..|+|+|++..|.+|+.|++++++.+|+|+|.+.+.+++|||+|+|||+|++.+++.++|
T Consensus 6 ~~~l~~~~iipdvid~f~P~~~L~V~y~s~~V~~G~~l~p~~t~~~P~i~~~~~~~~~~ytlim~DpDaP~~~~~~~~~~ 85 (175)
T PLN00169 6 RDPLVVGRVVGDVLDPFTRSISLRVTYGSREVNNGCELKPSQVVNQPRVDIGGEDLRTFYTLVMVDPDAPSPSNPNLREY 85 (175)
T ss_pred ccchhhCCcCCcccCCcCCceEEEEEECCcCcCCcCCCCHHHhccCCEEEEccCCCCceeEEEEECCCCCCCCCCCcccE
Confidence 68999999999999999999999999999999999999999999999999987766899999999999999999999999
Q ss_pred EEEEEecCCCCcCCCCCceeeccCCCCCCCCCceEEEEEeeeCCCCCCCCCCCCCCccHHHHHHHcCCCCceEEEEEEEe
Q 035977 82 LHWIVTDIPGTTDATFGRELVSYEIPRPNIGIHRFVFVLFKQTRRQTVNPPSSRDHFNTRAFAAENDLGLPVAAVYFNAQ 161 (169)
Q Consensus 82 lHwlv~ni~~~~~~~~g~~~~~Y~~P~P~~g~HRY~flL~~q~~~~~~~~~~~R~~F~~~~F~~~~~L~~pva~~~f~~~ 161 (169)
+||++.||+++.....|+++++|+||.|++|.|||+|+||+|++.+.+..+..|.+||+++|+++++|+.|||||||++|
T Consensus 86 ~HW~v~nip~~~~~~~g~~~~~Y~~P~Pp~G~HRYvflly~Q~~~~~~~~~~~R~~F~~~~Fa~~~~L~~PvA~nfF~a~ 165 (175)
T PLN00169 86 LHWLVTDIPATTGATFGQEVVCYESPRPTAGIHRFVFVLFRQLGRQTVYAPGWRQNFNTRDFAELYNLGSPVAAVYFNCQ 165 (175)
T ss_pred EEEEEeCCccccccccCccceeecCCCCCCCceeEEEEEEEcCCCcccCCcccCCCcCHHHHHHHhCCCCceEEEEEEEe
Confidence 99999999987555678999999999999999999999999998876556678999999999999999999999999999
Q ss_pred eCCCCCCC
Q 035977 162 RETAARRR 169 (169)
Q Consensus 162 ~d~~~~~~ 169 (169)
|++.-++|
T Consensus 166 ~~~~~~~~ 173 (175)
T PLN00169 166 RESGSGGR 173 (175)
T ss_pred cCCcCCcc
Confidence 99977665
No 2
>KOG3346 consensus Phosphatidylethanolamine binding protein [General function prediction only]
Probab=100.00 E-value=7.8e-52 Score=318.51 Aligned_cols=168 Identities=46% Similarity=0.793 Sum_probs=157.3
Q ss_pred CCCcccCCcccccCCCCCCCeeEEEEECC-eeecCCcccCcccccCCCeEEEecC-CCCceEEEEEeCCCCCCCCCCCCC
Q 035977 2 LEPLAVGGVIGDVIESFTPSIKMSVTYNN-KQVCNGHELFPSTVVSKPRVEIQGG-DMRSFFTLVMTDPDVPGPSDPYLR 79 (169)
Q Consensus 2 ~~~l~~~~iipdv~~~f~P~~~L~V~y~~-~~v~~G~~l~~~~t~~~P~i~~~~~-~~~~~ytlimvDpD~p~~~~~~~~ 79 (169)
++.+.+++||+|+|+.+.|.+.|+|+|++ ..|++|+.|++++++..|.|+|.+. +++++|||||+|||+|++++++++
T Consensus 5 ~~~~~~~~iv~Dvl~~~~p~~~l~V~y~~~~~v~~G~~l~pt~~~~~P~v~~~~~a~~~~~yTLvm~DPDaPsr~~p~~r 84 (185)
T KOG3346|consen 5 RDPLNKHRIVPDVLDDFEPSVKLNVTYNSDIVVENGNELTPTQVKNRPIVSWDGFADPGSLYTLVMTDPDAPSRSDPKFR 84 (185)
T ss_pred hhhhhccCcchhhhccCCCceEEEEEeCCCeeecCCCEeCchhhccCCeEEEcCcCCCCCeEEEEEeCCCCCCCCCCcce
Confidence 46789999999999999999999999996 9999999999999999999999974 778999999999999999999999
Q ss_pred eEEEEEEecCCCCcCCCCCceeeccCCCCC--CCCCceEEEEEeeeCCCCCCC--CCCCCCCccHHHHHHHcCCCCceEE
Q 035977 80 EHLHWIVTDIPGTTDATFGRELVSYEIPRP--NIGIHRFVFVLFKQTRRQTVN--PPSSRDHFNTRAFAAENDLGLPVAA 155 (169)
Q Consensus 80 ~~lHwlv~ni~~~~~~~~g~~~~~Y~~P~P--~~g~HRY~flL~~q~~~~~~~--~~~~R~~F~~~~F~~~~~L~~pva~ 155 (169)
+|||||++|||++.++++|.++++|+||.| ++|.|||+|+||+|+....+. .+..|++|++++|+++++|++|||+
T Consensus 85 E~lHWlV~nIPg~~~~~~G~~i~~Y~~P~Pp~~tG~HRyVfll~rQ~~~~~~~~~~~~~R~~F~~~~F~~~~~lg~PvA~ 164 (185)
T KOG3346|consen 85 EWLHWLVTNIPGTDGISKGQEISEYLGPGPPKGTGLHRYVFLLYRQPGRLDSDEPSPLSRGNFNTRKFAKKYELGTPVAG 164 (185)
T ss_pred eEEEEEEEeecCCccccCCeEeeeeeCCCCCCCCCceEEEEEEEEcCCccccccCCCCcccceeHHHHHHHhccCCchhh
Confidence 999999999999976899999999999999 699999999999999987653 3689999999999999999999999
Q ss_pred EEEEEeeCCCCCCC
Q 035977 156 VYFNAQRETAARRR 169 (169)
Q Consensus 156 ~~f~~~~d~~~~~~ 169 (169)
+||+++||+..++|
T Consensus 165 ~~f~aq~d~~~~~~ 178 (185)
T KOG3346|consen 165 NFFQAQWDDYVPKL 178 (185)
T ss_pred heehhhcchhhHHH
Confidence 99999999987653
No 3
>cd00866 PEBP_euk PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in eukaryotes. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in eukaryotes. Members here include those in plants such as Arabidopsis thaliana FLOWERING LOCUS (FT) and TERMINAL FLOWER1 (FT1) which function as a promoter and a repressor of the floral transitions, respectively as well as the mammalian Raf kinase inhibitory protein (RKIP) which inhibits MAP kinase (Raf-MEK-ERK), G protein-coupled receptor (GPCR) kinase and NFkappaB signaling cascades. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer).
Probab=100.00 E-value=4.3e-39 Score=242.89 Aligned_cols=138 Identities=43% Similarity=0.739 Sum_probs=126.1
Q ss_pred eEEEEECC-eeecCCcccCcccccCCCeEEEecCC-CCceEEEEEeCCCCCCCCCCCCCeEEEEEEecCCCCcC----CC
Q 035977 23 KMSVTYNN-KQVCNGHELFPSTVVSKPRVEIQGGD-MRSFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTD----AT 96 (169)
Q Consensus 23 ~L~V~y~~-~~v~~G~~l~~~~t~~~P~i~~~~~~-~~~~ytlimvDpD~p~~~~~~~~~~lHwlv~ni~~~~~----~~ 96 (169)
.|.|+|++ ..|.+|+.|++++++.+|+|+|.... .+++|+|||+|+|+|.+.++..+++||||++||+++.. ..
T Consensus 2 ~l~v~y~~~~~v~~G~~l~~~~~~~~P~i~~~~~~~~~~~y~lvm~DpD~p~~~~~~~~~~lHwl~~ni~~~~~~~~~~~ 81 (154)
T cd00866 2 DLTVSYGSSGVVTPGNLLTPSETQKAPTVSFSSEDPPDKLYTLVMVDPDAPSRDDPKFREWLHWLVTNIPGSDTTTGLVS 81 (154)
T ss_pred eEEEEECCCcCcCCCCCCCHHHhCcCCeEEEecCCCCCCeEEEEEECCCCCCCCCCCCCCEEEEEEeCcCCccccccccC
Confidence 68999998 99999999999999999999999875 68999999999999999988999999999999998742 45
Q ss_pred CCceeeccCCCCC--CCCCceEEEEEeeeCCCCCCCC-------CCCCCCccHHHHHHHcCCCCceEEEEEEE
Q 035977 97 FGRELVSYEIPRP--NIGIHRFVFVLFKQTRRQTVNP-------PSSRDHFNTRAFAAENDLGLPVAAVYFNA 160 (169)
Q Consensus 97 ~g~~~~~Y~~P~P--~~g~HRY~flL~~q~~~~~~~~-------~~~R~~F~~~~F~~~~~L~~pva~~~f~~ 160 (169)
.|..+++|+||+| |+|.|||+|+||+|+..+.+.. ...|.+||+++|++++||+.|||+|||++
T Consensus 82 ~~~~~~~Y~~P~Pp~g~g~HRY~fll~~q~~~~~~~~~~~~~~~~~~r~~F~~~~F~~~~~L~~pva~~~f~~ 154 (154)
T cd00866 82 KGEVLVPYLGPGPPKGTGPHRYVFLLFKQPGGLDFPESKLPPTSGLGRRGFDVREFAKKNGLGLPVAANFFQV 154 (154)
T ss_pred CCCCcceeeCCCCCCCCCCccEEEEEEEeCCccCccccccccCCccccCCcCHHHHHHHhCCCCcEEEEEEeC
Confidence 6789999999999 6789999999999999887642 47899999999999999999999999985
No 4
>PF01161 PBP: Phosphatidylethanolamine-binding protein; InterPro: IPR008914 The PEBP (PhosphatidylEthanolamine-Binding Protein) family is a highly conserved group of proteins that have been identified in numerous tissues in a wide variety of organisms, including bacteria, yeast, nematodes, plants, drosophila and mammals. The various functions described for members of this family include lipid binding, neuronal development [], serine protease inhibition [], the control of the morphological switch between shoot growth and flower structures [], and the regulation of several signalling pathways such as the MAP kinase pathway [], and the NF-kappaB pathway []. The control of the latter two pathways involves the PEBP protein RKIP, which interacts with MEK and Raf-1 to inhibit the MAP kinase pathway, and with TAK1, NIK, IKKalpha and IKKbeta to inhibit the NF-kappaB pathway. Other PEBP-like proteins that show strong structural homology to PEBP include Escherichia coli YBHB and YBCL, the Rattus norvegicus (Rat) neuropeptide HCNP, and Antirrhinum majus (Garden snapdragon) protein centroradialis (CEN). Structures have been determined for several members of the PEBP-like family, all of which show extensive fold conservation. The structure consists of a large central beta-sheet flanked by a smaller beta-sheet on one side, and an alpha helix on the other. Sequence alignments show two conserved central regions, CR1 and CR2, that form a consensus signature for the PEBP family. These two regions form part of the ligand-binding site, which can accommodate various anionic groups. The N- and C-terminal regions are the least conserved, and may be involved in interactions with different protein partners. The N-terminal residues 2-12 form the natural cleavage peptide HCNP involved in neuronal development. The C-terminal region is deleted in plant and bacterial PEBP homologues, and may help control accessibility to the active site. ; PDB: 1BD9_A 1BEH_A 2QYQ_A 2L7W_A 3AXY_A 2IQX_C 2IQY_A 1KN3_A 1FUX_A 1B7A_A ....
Probab=99.96 E-value=1.8e-29 Score=188.74 Aligned_cols=129 Identities=33% Similarity=0.640 Sum_probs=106.5
Q ss_pred eeEEEEE-CCeeecCCcccCccc-ccCCCeEEEecCCCCceEEEEEeCCCCCCCCCCCCCeEEEEEEecCC---------
Q 035977 22 IKMSVTY-NNKQVCNGHELFPST-VVSKPRVEIQGGDMRSFFTLVMTDPDVPGPSDPYLREHLHWIVTDIP--------- 90 (169)
Q Consensus 22 ~~L~V~y-~~~~v~~G~~l~~~~-t~~~P~i~~~~~~~~~~ytlimvDpD~p~~~~~~~~~~lHwlv~ni~--------- 90 (169)
..|.|+| ++..+.+|+.+++.. ++..|+ .+++|+|+|+|+|+|.+.+++.++++|||++||+
T Consensus 2 ~~L~v~f~~~~~~~~G~~~sp~~~~~~~P~-------~~~~y~lim~D~D~P~~~~~~~~~~~Hwl~~ni~~~~~~~~~~ 74 (146)
T PF01161_consen 2 GKLPVKFTGNKSVCPGNNVSPPLSWQNAPT-------GTKSYTLIMVDPDAPSRENPSFGPFLHWLVTNIPSTELPEGSD 74 (146)
T ss_dssp CEEEEEECTTEECSTTEEEEGGGECSS-TC-------TTSEEEEEEEETTSSBTTSCTTTSEEEEEEEEEETSEE-TTSS
T ss_pred cCcCceeEcccccCCCCCCCcCcccccCCC-------CCcEEEEEEECCCCCccccCCCCcEEEEEEcCCCCccCCCCCC
Confidence 4799999 689999999999999 888888 4779999999999999888889999999999999
Q ss_pred CC-cCC-CCCceeeccCCCCC--CCCCceEEEEEeeeCCCCCCCCCCCCCCccHHHHHHHcCCCCc-eEEEEEE
Q 035977 91 GT-TDA-TFGRELVSYEIPRP--NIGIHRFVFVLFKQTRRQTVNPPSSRDHFNTRAFAAENDLGLP-VAAVYFN 159 (169)
Q Consensus 91 ~~-~~~-~~g~~~~~Y~~P~P--~~g~HRY~flL~~q~~~~~~~~~~~R~~F~~~~F~~~~~L~~p-va~~~f~ 159 (169)
.- ... +.|..+++|.||+| ++|.|||+|+||+|+..+.+ ......+++++.+++++|+.+ ++++||+
T Consensus 75 ~~~~~~~~~g~~~~~Y~~P~Pp~g~g~HrY~f~ly~q~~~~~l--~~~~~~~~~~~~~~~~~L~~~~l~~~y~r 146 (146)
T PF01161_consen 75 GARQGINSSGQVIAPYLGPCPPKGSGPHRYVFLLYAQPSPLPL--SDGATKFDLREAFKGHGLGPASLAGNYFR 146 (146)
T ss_dssp TCETSBGGTSEEEES--SB-SSTTSSCEEEEEEEEEESSSSTS--GBSSTHHTHHHHHHHTTEESEESEEEEEE
T ss_pred ccEecccccCccccEEcCCcCcCcCCCceEEEEEEEcCCCCCC--CCCCCHHHHHHHHHcCCCCCceEEEEEEC
Confidence 10 011 23667899999999 57899999999999997654 355566889999999999987 8999996
No 5
>cd00457 PEBP PhosphatidylEthanolamine-Binding Protein (PEBP) domain. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). A number of biological roles for members of the PEBP family include serine protease inhibition, membrane biogenesis, regulation of flowering plant stem architecture, and Raf-1 kinase inhibition. Although their overall structures are similar, the members of the PEBP family bind very different substrates including phospholipids, opioids, and hydrophobic odorant molecules as well as having different oligomerization states (monomer/dimer/tetramer).
Probab=99.92 E-value=1.4e-24 Score=165.08 Aligned_cols=122 Identities=30% Similarity=0.374 Sum_probs=98.0
Q ss_pred eecC-CcccCc----ccccCCCeEEEecCC-CCceEEEEEeCCCCCCCCCCCCCeEEEEEEecCCCCcCC----------
Q 035977 32 QVCN-GHELFP----STVVSKPRVEIQGGD-MRSFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDA---------- 95 (169)
Q Consensus 32 ~v~~-G~~l~~----~~t~~~P~i~~~~~~-~~~~ytlimvDpD~p~~~~~~~~~~lHwlv~ni~~~~~~---------- 95 (169)
.|.. |+.|+. ......|.|+|++.+ .+++|+|+|+|+|+|. ..+|+||+++||+.+...
T Consensus 6 ~~~~~g~~lp~~~~~~g~~~sP~l~w~~~p~~t~s~ali~~DpDap~-----~~~~~HWvv~nIp~~~~~~~~~~~~~~~ 80 (159)
T cd00457 6 EVGPSGSVLPPEYSFEGVGRFPSLSWDGPPPDVKEYVLVMEDPDAPL-----GRPIVHGLVYGIPANKTSLSNDDFVVTD 80 (159)
T ss_pred CcCCCCCccChhhccCCCCcCCceEecCCCCCCeEEEEEEECCCCCC-----CCCceEEEEeccCcccccccccccccCC
Confidence 4555 777777 667778999999875 5789999999999984 258999999999976411
Q ss_pred --CCCc----------eeeccCCCCC--CCCCceEEEEEeeeCCCCCCCC-CCCCCCccHHHHHHHcCCCCceEEEEEE
Q 035977 96 --TFGR----------ELVSYEIPRP--NIGIHRFVFVLFKQTRRQTVNP-PSSRDHFNTRAFAAENDLGLPVAAVYFN 159 (169)
Q Consensus 96 --~~g~----------~~~~Y~~P~P--~~g~HRY~flL~~q~~~~~~~~-~~~R~~F~~~~F~~~~~L~~pva~~~f~ 159 (169)
..+. ....|.||+| |+|.|||+|+||+|+..+.... ...|..|++.+|++.+.|+ ++|.++++
T Consensus 81 ~~~~~~~~~n~~g~~~~~~~Y~GP~PP~G~g~HrY~f~lyald~~~~~~~~~~~~~~~~~~~~~~~~vL~-~~a~~~~~ 158 (159)
T cd00457 81 NGKGGLQGGFKYGKNRGGTVYIGPRPPLGHGPHRYFFQVYALDEPLDRSKLGDGRTKFEVARFAEGNVLG-AVGEWVGQ 158 (159)
T ss_pred CCccceeccccccccCCCcCCcCCCCCCCCCCeeEEEEEEEecCccccccccCCCCHHHHHHHHHhCeee-EEEEEEEE
Confidence 1111 2349999999 5679999999999998876532 4789999999999999997 68998876
No 6
>cd00865 PEBP_bact_arch PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in bacterial and archaea. Members here include Escherichia coli YBHB and YBCL which are thought to regulate protein phosphorylation as well as Sulfolobus solfataricus SsCEI which inhibits serine proteases alpha-chymotrypsin and elastase. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer). In a few of the bacterial members present here the dimerization interface is proposed to form the ligand binding site, unlike in other PEBP members.
Probab=99.72 E-value=6.2e-17 Score=121.89 Aligned_cols=94 Identities=23% Similarity=0.362 Sum_probs=73.4
Q ss_pred cCCCeEEEecCC-CCceEEEEEeCCCCCCCCCCCCCeEEEEEEecCCCCc-CCCCC----------------ceeeccCC
Q 035977 45 VSKPRVEIQGGD-MRSFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTT-DATFG----------------RELVSYEI 106 (169)
Q Consensus 45 ~~~P~i~~~~~~-~~~~ytlimvDpD~p~~~~~~~~~~lHwlv~ni~~~~-~~~~g----------------~~~~~Y~~ 106 (169)
...|.|+|++.+ ..++|+|+|+|+|+|. ..+++||+++||++.. .+..| .....|.|
T Consensus 25 ~~SP~l~w~~~p~~t~s~al~m~D~Dap~-----~~~~~HW~~~nIp~~~~~i~~g~~~~~~~~~~~~g~n~~~~~~Y~g 99 (150)
T cd00865 25 NVSPPLSWSGVPAGTKSLALIVEDPDAPT-----GGGFVHWVVWNIPADTTELPEGASRGALPAGAVQGRNDFGEAGYGG 99 (150)
T ss_pred CcCCCeEEcCCCCCCeEEEEEEEcCCCCC-----CCCEEEEEEeccCcccccccCCcccccCCCCCeEeecCCCCCeecC
Confidence 468999999875 5799999999999983 2589999999999862 11111 24689999
Q ss_pred CCCCC-CCceEEEEEeeeCCCCCCCCCCCCCCccHHHHHHHcC
Q 035977 107 PRPNI-GIHRFVFVLFKQTRRQTVNPPSSRDHFNTRAFAAEND 148 (169)
Q Consensus 107 P~P~~-g~HRY~flL~~q~~~~~~~~~~~R~~F~~~~F~~~~~ 148 (169)
|+|+. +.|||+|.||+++..+.+ ...+...++++...
T Consensus 100 P~Pp~~~~HrY~f~vyAld~~l~~-----~~~~~~~~l~~ai~ 137 (150)
T cd00865 100 PCPPDGGPHRYVFTVYALDVPLLL-----PPGATRAELLFAMK 137 (150)
T ss_pred CCCcCCCceEEEEEEEEeCCccCC-----CCCCCHHHHHHHHh
Confidence 99954 899999999999988765 35677777766654
No 7
>PRK10257 putative kinase inhibitor protein; Provisional
Probab=99.71 E-value=7.5e-17 Score=122.34 Aligned_cols=80 Identities=25% Similarity=0.443 Sum_probs=62.3
Q ss_pred CCCeEEEecCC-CCceEEEEEeCCCCCCCCCCCCCeEEEEEEecCCCCcC-----CC-------CCc-------eeeccC
Q 035977 46 SKPRVEIQGGD-MRSFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTD-----AT-------FGR-------ELVSYE 105 (169)
Q Consensus 46 ~~P~i~~~~~~-~~~~ytlimvDpD~p~~~~~~~~~~lHwlv~ni~~~~~-----~~-------~g~-------~~~~Y~ 105 (169)
.+|.|+|++.. ..++|+|+|.|||+|.. ..|+||++.|||++.. .. .|. ....|.
T Consensus 30 ~SP~L~w~~~P~~t~s~ali~~DpDap~~-----~~~~HWvv~nIP~~~~~l~eg~~~~~~~~p~g~~~g~n~~g~~gY~ 104 (158)
T PRK10257 30 ISPHLAWDDVPAGTKSFVVTCYDPDAPTG-----SGWWHWVVVNLPADTRVLPQGFGSGLVALPDGVLQTRTDFGKAGYG 104 (158)
T ss_pred CCceEEEcCCCCCceEEEEEEECCCCCCC-----CcEEEEEEEcCCCCcccccCCCCcccccCCCCceeccccCCCccCc
Confidence 48999999865 36999999999999864 3699999999997531 11 011 246899
Q ss_pred CCCCCCC-CceEEEEEeeeC-CCCCCC
Q 035977 106 IPRPNIG-IHRFVFVLFKQT-RRQTVN 130 (169)
Q Consensus 106 ~P~P~~g-~HRY~flL~~q~-~~~~~~ 130 (169)
||+|+.| .|||+|.||+++ ..+.+.
T Consensus 105 GP~PP~g~~HrY~f~vyALd~~~L~l~ 131 (158)
T PRK10257 105 GAAPPKGETHRYIFTVHALDVERIDVD 131 (158)
T ss_pred CCCCccCCCceEEEEEEEecCcccCCC
Confidence 9999655 799999999999 457663
No 8
>PRK09818 putative kinase inhibitor; Provisional
Probab=99.69 E-value=2.2e-16 Score=122.35 Aligned_cols=100 Identities=25% Similarity=0.437 Sum_probs=74.2
Q ss_pred EEEEECCeeecCCcccCcccc---------cCCCeEEEecCC-CCceEEEEEeCCCCCCCCCCCCCeEEEEEEecCCCCc
Q 035977 24 MSVTYNNKQVCNGHELFPSTV---------VSKPRVEIQGGD-MRSFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTT 93 (169)
Q Consensus 24 L~V~y~~~~v~~G~~l~~~~t---------~~~P~i~~~~~~-~~~~ytlimvDpD~p~~~~~~~~~~lHwlv~ni~~~~ 93 (169)
|.|+ +..+..|..|+...+ ...|.|+|++.+ ..++|+|+|.|||+|.. ..|+||+++|||++.
T Consensus 22 ~~lt--S~~f~~G~~ip~~~~~~~~~~~G~n~SP~L~W~~~P~gtks~aLi~~DpDaP~g-----~~~~HWvv~nIP~~~ 94 (183)
T PRK09818 22 FQVT--SNEIKTGEQLTTSHVFSGFGCEGGNTSPSLTWSGAPEGTKSFAVTVYDPDAPTG-----SGWWHWTVANIPATV 94 (183)
T ss_pred EEEE--CcCccCcCCCCHHHcccccCCCCCCcceeEEEccCCCCcEEEEEEEECCCCCCC-----CcEEEEEEEcCCCCc
Confidence 5555 556678888876542 258999999864 36899999999999864 369999999999752
Q ss_pred C-----C--------CCC-------ceeeccCCCCC--CCCCceEEEEEeeeC-CCCCCC
Q 035977 94 D-----A--------TFG-------RELVSYEIPRP--NIGIHRFVFVLFKQT-RRQTVN 130 (169)
Q Consensus 94 ~-----~--------~~g-------~~~~~Y~~P~P--~~g~HRY~flL~~q~-~~~~~~ 130 (169)
. . ..| -....|.||+| |.|.|||+|.||+.+ ..+.+.
T Consensus 95 ~~l~eg~~~~~~~~~~~g~~~g~N~~g~~gY~GP~PP~G~g~HrY~F~vyALd~~~l~l~ 154 (183)
T PRK09818 95 TYLPADAGRRDGTKLPTGAVQGRNDFGYAGFGGACPPKGDKPHHYQFKVWALKTDKIPVD 154 (183)
T ss_pred cccCCCCcccccccCCCCCEEeecCCCCCceECCCCccCCCCEEEEEEEEEecCcccCCC
Confidence 1 0 011 12468999999 567899999999998 446553
No 9
>TIGR00481 Raf kinase inhibitor-like protein, YbhB/YbcL family.
Probab=99.65 E-value=2e-15 Score=112.70 Aligned_cols=94 Identities=24% Similarity=0.438 Sum_probs=71.1
Q ss_pred cCCCeEEEecCC-CCceEEEEEeCCCCCCCCCCCCCeEEEEEEecCCCCc-----CCC-------CC--------ceeec
Q 035977 45 VSKPRVEIQGGD-MRSFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTT-----DAT-------FG--------RELVS 103 (169)
Q Consensus 45 ~~~P~i~~~~~~-~~~~ytlimvDpD~p~~~~~~~~~~lHwlv~ni~~~~-----~~~-------~g--------~~~~~ 103 (169)
...|.|+|++.. ..++|+|+|.|+|+|... .|+||+++|||++. +.. .| .....
T Consensus 13 n~SP~l~w~~~P~~t~s~al~~~D~Dap~~~-----~~~HWv~~nIp~~~~~l~e~~~~~~~~~~~g~~~~g~n~~g~~~ 87 (141)
T TIGR00481 13 NISPPLSWDGVPEGAKSLALTCIDPDAPTGC-----GWWHWVVVNIPADTTVLPENASSDDKRLPQGVPLQGRNDFGKSG 87 (141)
T ss_pred CCCcEEEEcCCCCCceEEEEEEECCCCCCCC-----CeEEEEEecCCCCcccccCCccccccccCCcceeEeeccCCCcc
Confidence 348999999864 468999999999998753 49999999999742 111 11 12479
Q ss_pred cCCCCCCCCCceEEEEEeeeCCC-CCCCCCCCCCCccHHHHHHHcC
Q 035977 104 YEIPRPNIGIHRFVFVLFKQTRR-QTVNPPSSRDHFNTRAFAAEND 148 (169)
Q Consensus 104 Y~~P~P~~g~HRY~flL~~q~~~-~~~~~~~~R~~F~~~~F~~~~~ 148 (169)
|.||+|+.|.|||+|.||+++.. +.+. ..+...++.++..
T Consensus 88 Y~GP~PP~g~HrY~f~vyALd~~~l~l~-----~~~~~~~l~~ai~ 128 (141)
T TIGR00481 88 YIGPCPPKGDHRYLFTVYALDTEKLDLD-----PGFSLADLGDAME 128 (141)
T ss_pred EeCCCCcCCCEEEEEEEEEecCCCCCCC-----CCCCHHHHHHHHh
Confidence 99999977779999999999976 6653 2566677766644
No 10
>COG1881 Phospholipid-binding protein [General function prediction only]
Probab=99.62 E-value=2.4e-15 Score=115.59 Aligned_cols=115 Identities=20% Similarity=0.334 Sum_probs=79.1
Q ss_pred CeeecCCcccCcccc----cCCCeEEEecC-CCCceEEEEEeCCCCCCCCCCCCCeEEEEEEecCCCCc-----C-CC--
Q 035977 30 NKQVCNGHELFPSTV----VSKPRVEIQGG-DMRSFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTT-----D-AT-- 96 (169)
Q Consensus 30 ~~~v~~G~~l~~~~t----~~~P~i~~~~~-~~~~~ytlimvDpD~p~~~~~~~~~~lHwlv~ni~~~~-----~-~~-- 96 (169)
+..+..|+.++...+ ...|.++|++. ..+++|+|+|.|||||+. ..|+||++.||+... + ..
T Consensus 27 s~~f~~g~~ip~~~t~~g~~~sPpl~ws~~P~~tkS~AL~v~DpDAP~g-----~~~~HWvv~nIp~~~~~~~~~~~~~~ 101 (174)
T COG1881 27 SNAFADGAPIPDEYTCGGPNISPPLSWSGVPEGTKSFALTVDDPDAPTG-----GGWVHWVVANIPADVTELPEGSGPKS 101 (174)
T ss_pred chhhhCCCccchhhhcCCCCcCCceeecCCCCCCeeEEEEEECCCCCCC-----CcEEEEEEEccCCccccccccccccc
Confidence 456677777776553 56899999986 447899999999999973 589999999999731 0 00
Q ss_pred -----C---CceeeccCCCCCCCCC-ceEEEEEeeeCCCCCCCCCCCCCCccHHHHHHHcCCC
Q 035977 97 -----F---GRELVSYEIPRPNIGI-HRFVFVLFKQTRRQTVNPPSSRDHFNTRAFAAENDLG 150 (169)
Q Consensus 97 -----~---g~~~~~Y~~P~P~~g~-HRY~flL~~q~~~~~~~~~~~R~~F~~~~F~~~~~L~ 150 (169)
+ +-.-..|.||+|+.|. |||.|.||+++-.+... +.....=.+.+-++.|-|+
T Consensus 102 ~~~~~qg~Nd~g~~~Y~Gp~PP~g~~HrY~f~vyALd~~~~~~-~~g~~~~~~~~~~~~hil~ 163 (174)
T COG1881 102 KIGIVQGINDFGSRGYGGPCPPKGHGHRYYFTVYALDVELLLL-PAGASGAELGKAMEGHILA 163 (174)
T ss_pred ccceEEeeccccccCcccCCCCCCCCeEEEEEEEEcccccccC-CCCCCHHHHHHHHHHHHHH
Confidence 0 1233559999996666 99999999998754321 1222222334445555554
No 11
>KOG3586 consensus TBX1 and related T-box transcription factors [Transcription]
Probab=40.07 E-value=39 Score=29.49 Aligned_cols=51 Identities=27% Similarity=0.360 Sum_probs=30.8
Q ss_pred CCcc--cCcccccCCCeEE--EecCCCCceEEEEEeCCCCCCCCCCCCCeEEE---EEEec
Q 035977 35 NGHE--LFPSTVVSKPRVE--IQGGDMRSFFTLVMTDPDVPGPSDPYLREHLH---WIVTD 88 (169)
Q Consensus 35 ~G~~--l~~~~t~~~P~i~--~~~~~~~~~ytlimvDpD~p~~~~~~~~~~lH---wlv~n 88 (169)
.|++ |+++--..-|+|+ |.+.++...|.|+| |-- | -.+..|+...| |||+.
T Consensus 96 lGTEMIITKsGRRMFPTvrV~~~GldP~a~Y~vlm-DvV-P-vD~KRYRYayH~S~WlvAG 153 (437)
T KOG3586|consen 96 LGTEMIITKSGRRMFPTVRVKFSGLDPMADYYVLM-DVV-P-VDSKRYRYAYHSSSWLVAG 153 (437)
T ss_pred cCceEEEecccccccceEEEEEecCCcccceEEEE-eEE-e-cccceeeeeecccceeeec
Confidence 4555 4455556789865 56778888886655 321 1 11234666666 99986
No 12
>PRK04243 50S ribosomal protein L15e; Validated
Probab=33.23 E-value=57 Score=25.66 Aligned_cols=28 Identities=21% Similarity=0.674 Sum_probs=21.6
Q ss_pred ceEEEEEeCCCCCCCCCCCCCeEEEEEEecC
Q 035977 59 SFFTLVMTDPDVPGPSDPYLREHLHWIVTDI 89 (169)
Q Consensus 59 ~~ytlimvDpD~p~~~~~~~~~~lHwlv~ni 89 (169)
+.|-||||||.-|.-.+ .+-+.|+....
T Consensus 128 K~fEVIlVDp~H~aIr~---Dp~~nWI~~~~ 155 (196)
T PRK04243 128 KWYEVILVDPHHPAIKN---DPDLNWICDKS 155 (196)
T ss_pred ccEEEEEecCCCcchhc---Ccccceecccc
Confidence 78999999999887553 36789998543
No 13
>PTZ00026 60S ribosomal protein L15; Provisional
Probab=28.82 E-value=65 Score=25.48 Aligned_cols=27 Identities=19% Similarity=0.573 Sum_probs=21.2
Q ss_pred ceEEEEEeCCCCCCCCCCCCCeEEEEEEec
Q 035977 59 SFFTLVMTDPDVPGPSDPYLREHLHWIVTD 88 (169)
Q Consensus 59 ~~ytlimvDpD~p~~~~~~~~~~lHwlv~n 88 (169)
+.|-||||||.-|.-.+ .+-+.|+...
T Consensus 128 K~yEVILvDp~H~aIr~---Dp~~nWI~~~ 154 (204)
T PTZ00026 128 KFYEVILVDPFHNAIRN---DPRINWICNP 154 (204)
T ss_pred ccEEEEEecCCCcccee---Ccccceeccc
Confidence 78999999998877543 3678999864
No 14
>PF01828 Peptidase_A4: Peptidase A4 family; InterPro: IPR000250 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases in family G1 form a subset of what were formerly termed 'pepstatin-insensitive carboxyl proteinases'. After its discovery in about 1970, the pentapeptide pepstatin soon came to be thought of as a very general inhibitor of the endopeptidases that are active at acidic pH. But more recently several acid-acting endopeptidases from bacteria and fungi had been found to be resistant to pepstatin. The unusual active sites of the 'pepstatin-insensitive carboxyl peptidases' proved difficult to characterise, but it has now been established that the enzymes from bacteria are acid-acting serine peptidases in family S53 (clan SB), IPR000209 from INTERPRO, whereas the fungal enzymes are in family G1 (formerly A4). The importance of glutamate ('E') and glutamine ('Q') residues in the active sites of the family G1 enzymes led to the family name, Eqolisin []. This group of glutamate/glutamine peptidases belong to MEROPS peptidase family G1 (eqolisin family, clan GA). An example of this group is scytalidoglutamic peptidase. The proteins are thermostable, pepstatin insensitive and are active at low pH ranges []. The enzyme has a unique heterodimeric structure, with a 39-residue light chain and a 173-residue heavy chain bound to each other non-covalently []. The tertiary structure of the active site of scytalidoglutamic peptidase (MEROPS G01.001) with a bound tripeptide product has been interpreted as showing that Glu136 is the primary catalytic residue. The most likely mechanism is suggested to be nucleophilic attack by a water molecule activated by the Glu136 side chain on the si-face of the scissile peptide bond carbon atom to form the tetrahedral intermediate. Electrophilic assistance, and oxyanion stabilisation, are provided by the side-chain amide of Gln53. Both scytalidoglutamic peptidase (MEROPS G01.001) and aspergilloglutamic peptidase (MEROPS G01.002) cleave the Tyr26 Thr27 bond in the B chain of oxidized insulin; a bond not cleaved by other acid-acting endopeptidases. Scytalidoglutamic peptidase is most active on casein at pH 2 and is inhibited by 1,2-epoxy-3-(p-nitrophenoxy)propane (EPNP), a compound that also inhibits pepsin. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1Y43_B 1S2B_A 2IFR_A 1S2K_A 2IFW_A.
Probab=23.49 E-value=2e+02 Score=22.66 Aligned_cols=62 Identities=18% Similarity=0.297 Sum_probs=35.2
Q ss_pred EECCeeecCCcccCcccccCCC---eEEEecCCCCceEEEEEeCCCCCCCCCCCCCeEEEEEEecCCCC
Q 035977 27 TYNNKQVCNGHELFPSTVVSKP---RVEIQGGDMRSFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGT 92 (169)
Q Consensus 27 ~y~~~~v~~G~~l~~~~t~~~P---~i~~~~~~~~~~ytlimvDpD~p~~~~~~~~~~lHwlv~ni~~~ 92 (169)
.|.+..|.+|+.|....+...+ .+.++....++.++.-+..+..+..+ +.-.-|++.+....
T Consensus 85 ~~~~~~v~~GD~i~~~V~a~s~~~g~~~l~N~stG~~~t~t~t~~~~~~l~----~~~AEWIvEd~~~~ 149 (208)
T PF01828_consen 85 DFSNFPVSPGDTIRVTVTATSNTSGTITLENLSTGQSVTKTLTAPSGPTLC----GTSAEWIVEDFSSG 149 (208)
T ss_dssp EETT----TT-EEEEEEEEEETTEEEEEEEETTTTEEEEEEE-S--SS-------S-EEEEEEE--EEC
T ss_pred ccccceECCCCEEEEEEEecCCCCEEEEEEeCCCCEEEEEEEccCCCCCcc----cCcEEEEEEccccC
Confidence 4556789999999887766544 36677666688998888886665554 57789999987543
No 15
>PF11995 DUF3490: Domain of unknown function (DUF3490); InterPro: IPR021881 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 160 amino acids in length. This domain is found associated with PF00225 from PFAM. This domain is found associated with PF00225 from PFAM. This domain has two conserved sequence motifs: EVE and ESA.
Probab=21.14 E-value=29 Score=26.39 Aligned_cols=17 Identities=35% Similarity=0.882 Sum_probs=12.9
Q ss_pred Cce-EEEEEeeeCCCCCC
Q 035977 113 IHR-FVFVLFKQTRRQTV 129 (169)
Q Consensus 113 ~HR-Y~flL~~q~~~~~~ 129 (169)
.|| |+||||+.+..-++
T Consensus 21 vHRTyFfLLFkGdpaD~i 38 (161)
T PF11995_consen 21 VHRTYFFLLFKGDPADSI 38 (161)
T ss_pred hhhhhhhheecCCcccce
Confidence 588 99999997655443
Done!