Query 035977
Match_columns 169
No_of_seqs 127 out of 1079
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 13:43:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035977.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035977hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wko_A Terminal flower 1 prote 100.0 3.5E-54 1.2E-58 332.5 17.2 168 2-169 12-180 (180)
2 3axy_A Protein heading DATE 3A 100.0 7.7E-53 2.6E-57 322.3 17.5 163 2-164 8-170 (170)
3 2iqy_A Phosphatidylethanolamin 100.0 1.4E-48 4.6E-53 303.6 17.3 164 1-166 4-180 (190)
4 2jyz_A CG7054-PA, GH14779P, PE 100.0 3.8E-47 1.3E-51 292.9 15.3 157 8-165 2-169 (179)
5 2gzq_A Phosphatidylethanolamin 100.0 2.1E-45 7.2E-50 287.6 13.0 160 2-163 15-200 (200)
6 1wpx_B Carboxypeptidase Y inhi 100.0 9.8E-45 3.4E-49 287.6 14.5 161 2-163 13-220 (220)
7 1fux_A Hypothetical 19.5 kDa p 99.9 1.7E-22 5.8E-27 153.5 9.9 96 30-130 7-135 (166)
8 3n08_A Putative phosphatidylet 99.9 5.7E-21 2E-25 143.2 14.9 112 31-148 9-137 (153)
9 1fjj_A Hypothetical 17.1 kDa p 99.8 3.9E-21 1.3E-25 145.1 9.5 95 31-130 7-132 (159)
10 2evv_A Hypothetical protein HP 99.8 5.1E-19 1.7E-23 138.4 10.4 118 36-163 47-200 (207)
11 3ewt_E Tumor necrosis factor r 32.6 20 0.00067 18.0 1.2 11 139-149 15-25 (25)
12 1ffk_I Ribosomal protein L15E; 28.4 38 0.0013 25.5 2.7 26 59-87 127-152 (194)
13 1k5j_A Nucleoplasmin core; bet 22.5 53 0.0018 22.9 2.4 33 8-40 83-119 (124)
No 1
>1wko_A Terminal flower 1 protein; CIS-peptide, PEBP, signaling protein; 1.80A {Arabidopsis thaliana} PDB: 1qou_A
Probab=100.00 E-value=3.5e-54 Score=332.48 Aligned_cols=168 Identities=76% Similarity=1.289 Sum_probs=153.2
Q ss_pred CCCcccCCcccccCCCCCCCeeEEEEECCeeecCCcccCcccccCCCeEEEecCCCCceEEEEEeCCCCCCCCCCCCCeE
Q 035977 2 LEPLAVGGVIGDVIESFTPSIKMSVTYNNKQVCNGHELFPSTVVSKPRVEIQGGDMRSFFTLVMTDPDVPGPSDPYLREH 81 (169)
Q Consensus 2 ~~~l~~~~iipdv~~~f~P~~~L~V~y~~~~v~~G~~l~~~~t~~~P~i~~~~~~~~~~ytlimvDpD~p~~~~~~~~~~ 81 (169)
+++|++++||||+|+.|.|++.|+|+|++..|.+|+.|++++++.+|+|+|++.+.+++|||+|+|||+|+++++++++|
T Consensus 12 ~~~l~~~~vipdvl~~f~P~~~l~V~y~s~~v~~G~~l~~~~~~~~P~l~~~~~~~~~~ytlvm~DPDaP~~~~p~~~~~ 91 (180)
T 1wko_A 12 IEPLIMGRVVGDVLDFFTPTTKMNVSYNKKQVSNGHELFPSSVSSKPRVEIHGGDLRSFFTLVMIDPDVPGPSDPFLKEH 91 (180)
T ss_dssp THHHHHTTHHHHTBCCCCCCSEEEEEETTEECCTTCBCCGGGGSSCCEEEEESSCTTCEEEEEEEECSCSBTTBCTTCCE
T ss_pred HHHHHhCCCCCCccCCcCCCeeEEEEECCeEcCCCCCcCHHHhCcCCeEEEecCCCCceEEEEEeCCCCCCCccCCCccE
Confidence 57899999999999999999999999999999999999999999999999998766779999999999999999999999
Q ss_pred EEEEEecCCCCcCCCCCceeeccCCCCCCCCCceEEEEEeeeCCCCCCCC-CCCCCCccHHHHHHHcCCCCceEEEEEEE
Q 035977 82 LHWIVTDIPGTTDATFGRELVSYEIPRPNIGIHRFVFVLFKQTRRQTVNP-PSSRDHFNTRAFAAENDLGLPVAAVYFNA 160 (169)
Q Consensus 82 lHwlv~ni~~~~~~~~g~~~~~Y~~P~P~~g~HRY~flL~~q~~~~~~~~-~~~R~~F~~~~F~~~~~L~~pva~~~f~~ 160 (169)
+|||++|||++.+...|..+++|.||+|++|.|||+|+||+|+..+.+.. +..|.+||+++|+++++|+.|||+|||++
T Consensus 92 ~HWlv~nIp~~~~~~~G~~~~~Y~gP~Pp~G~HRYvf~ly~q~~~l~~~~~~~~R~~F~~~~F~~~~~Lg~PVa~~fF~~ 171 (180)
T 1wko_A 92 LHWIVTNIPGTTDATFGKEVVSYELPRPSIGIHRFVFVLFRQKQRRVIFPNIPSRDHFNTRKFAVEYDLGLPVAAVFFNA 171 (180)
T ss_dssp EEEEEEEEETTSBGGGSEEEECCCCCCCCSSCEEEEEEEEECCTTCCCCCCCCCSTTCCHHHHHHHTTCCSEEEEEEEEE
T ss_pred EEEEEeccCcCccccCCceeeeeCCCCCCCCceEEEEEEEecCCccCCCCCccccCCcCHHHHHHHhCCCCcEEEEEEEE
Confidence 99999999998665678999999999999999999999999999887754 78999999999999999999999999999
Q ss_pred eeCCCCCCC
Q 035977 161 QRETAARRR 169 (169)
Q Consensus 161 ~~d~~~~~~ 169 (169)
|||+.+|||
T Consensus 172 q~d~~~r~~ 180 (180)
T 1wko_A 172 QRETAARKR 180 (180)
T ss_dssp CCC------
T ss_pred EECCcccCC
Confidence 999999997
No 2
>3axy_A Protein heading DATE 3A; phosphatidylethanolamine-binding protein, 14-3-3 protein, BZ protein, floral induction; HET: SEP; 2.40A {Oryza sativa japonica group} PDB: 1wkp_A
Probab=100.00 E-value=7.7e-53 Score=322.32 Aligned_cols=163 Identities=62% Similarity=1.045 Sum_probs=155.2
Q ss_pred CCCcccCCcccccCCCCCCCeeEEEEECCeeecCCcccCcccccCCCeEEEecCCCCceEEEEEeCCCCCCCCCCCCCeE
Q 035977 2 LEPLAVGGVIGDVIESFTPSIKMSVTYNNKQVCNGHELFPSTVVSKPRVEIQGGDMRSFFTLVMTDPDVPGPSDPYLREH 81 (169)
Q Consensus 2 ~~~l~~~~iipdv~~~f~P~~~L~V~y~~~~v~~G~~l~~~~t~~~P~i~~~~~~~~~~ytlimvDpD~p~~~~~~~~~~ 81 (169)
|++|++++||||||+.|.|++.|+|+|++..|.+|+.|+++++..+|.|+|++.+.+++|||+|+|||+|+++++++++|
T Consensus 8 ~~~l~~~~vipdvl~~F~P~~~l~v~y~s~~v~~G~~l~~~~~~~~P~l~~~~~~~~~~ytlvm~DpDaP~~~~p~~~~~ 87 (170)
T 3axy_A 8 RDPLVVGRVVGDVLDAFVRSTNLKVTYGSKTVSNGLELKPSMVTHQPRVEVGGNDMRTFYTLVMVDPDAPSPSDPNLREY 87 (170)
T ss_dssp TCHHHHTTHHHHTBCCCCCCSCEEEEETTEECCTTEECCGGGSSSCCEEEECCSCTTCEEEEEEEETTCSCTTSCTTCSE
T ss_pred hchhhhCCccccccCCcCCceEEEEEECCeEcCCCCEeCHHHhCcCCeEEEeCCCCCcEEEEEEECCCCCCCccCCCccE
Confidence 78999999999999999999999999999999999999999999999999998766899999999999999999999999
Q ss_pred EEEEEecCCCCcCCCCCceeeccCCCCCCCCCceEEEEEeeeCCCCCCCCCCCCCCccHHHHHHHcCCCCceEEEEEEEe
Q 035977 82 LHWIVTDIPGTTDATFGRELVSYEIPRPNIGIHRFVFVLFKQTRRQTVNPPSSRDHFNTRAFAAENDLGLPVAAVYFNAQ 161 (169)
Q Consensus 82 lHwlv~ni~~~~~~~~g~~~~~Y~~P~P~~g~HRY~flL~~q~~~~~~~~~~~R~~F~~~~F~~~~~L~~pva~~~f~~~ 161 (169)
+||+++||+++.+.+.|..+++|.||+|++|.|||+|+||+|+..+.+.++..|.+||+++|+++++|+.|||+|||++|
T Consensus 88 ~HWlv~nIp~~~~~~~G~~~~~Y~gP~Pp~G~HRY~f~ly~q~~~l~~~~p~~R~~F~~~~F~~~~~Lg~Pva~~fF~~q 167 (170)
T 3axy_A 88 LHWLVTDIPGTTAASFGQEVMSYESPRPTMGIHRLVFVLFQQLGRQTVYAPGWRQNFNTKDFAELYNLGSPVAAVYFNSQ 167 (170)
T ss_dssp EEEEEEEEETTSBGGGSEEEECCCCCCCCSSCEEEEEEEEECSSCCCCCCCSCSTTCCHHHHHHHTTCCSCSEEEEEEEC
T ss_pred EEEEEeCCCCCccccCCceeceecCCCCCCCcEEEEEEEEecCCccCCCCccccCCcCHHHHHHHhCCCCcEEEEEEEEE
Confidence 99999999998666778899999999999999999999999999888777889999999999999999999999999999
Q ss_pred eCC
Q 035977 162 RET 164 (169)
Q Consensus 162 ~d~ 164 (169)
||+
T Consensus 168 ~d~ 170 (170)
T 3axy_A 168 REA 170 (170)
T ss_dssp CCC
T ss_pred ecC
Confidence 985
No 3
>2iqy_A Phosphatidylethanolamine-binding protein 1; alpha-beta, hydrolase inhibitor; 1.40A {Rattus norvegicus} PDB: 2iqx_A 1b7a_A* 1a44_A 1beh_A 1bd9_A 2l7w_A 2qyq_A* 1kn3_A
Probab=100.00 E-value=1.4e-48 Score=303.57 Aligned_cols=164 Identities=29% Similarity=0.553 Sum_probs=151.9
Q ss_pred CCCCccc--CCcccccCCCCCCCeeEEEEEC-CeeecCCcccCcccccCCCe-EEEecCCCCceEEEEEeCCCCCCCCCC
Q 035977 1 MLEPLAV--GGVIGDVIESFTPSIKMSVTYN-NKQVCNGHELFPSTVVSKPR-VEIQGGDMRSFFTLVMTDPDVPGPSDP 76 (169)
Q Consensus 1 ~~~~l~~--~~iipdv~~~f~P~~~L~V~y~-~~~v~~G~~l~~~~t~~~P~-i~~~~~~~~~~ytlimvDpD~p~~~~~ 76 (169)
|.++|++ ++||||+|+. .|+..|+|+|+ +..|.+|+.|+++++...|. |+|++.+.+++|||+|+|||+|++.++
T Consensus 4 ~~~~~~~~~~~vipdvl~~-~p~~~l~v~~~~~~~v~~G~~l~~~~~~~~P~~l~~~~~~~~~~ytlvm~DpDaP~~~~p 82 (190)
T 2iqy_A 4 MAADISQWAGPLSLQEVDE-PPQHALRVDYGGVTVDELGKVLTPTQVMNRPSSISWDGLDPGKLYTLVLTDPDAPSRKDP 82 (190)
T ss_dssp SSCCGGGTTSTTCGGGTSS-CCSEECEEECSSCBCCSTTEECCGGGGSSCCSEEECTTCCTTSEEEEEEEESSSSCSSSC
T ss_pred HHHHHHHhcCccCCcCcCC-CCCceEEEEECCCcccCCCCEECHHHHhCCCceEEEccCCCCCEEEEEEECCCCCCCCCC
Confidence 6789999 9999999998 99999999995 58899999999999999999 999987657999999999999999999
Q ss_pred CCCeEEEEEEecCCCCcCCCCCceeeccCCCCC--CCCCceEEEEEeeeCCCCCCC-------CCCCCCCccHHHHHHHc
Q 035977 77 YLREHLHWIVTDIPGTTDATFGRELVSYEIPRP--NIGIHRFVFVLFKQTRRQTVN-------PPSSRDHFNTRAFAAEN 147 (169)
Q Consensus 77 ~~~~~lHwlv~ni~~~~~~~~g~~~~~Y~~P~P--~~g~HRY~flL~~q~~~~~~~-------~~~~R~~F~~~~F~~~~ 147 (169)
++++|+||+++|||++ ++..|..+++|.||+| |+|.|||+|+||+|+..+.+. .+..|.+||+++|++++
T Consensus 83 ~~~~~~HWlv~nIp~~-~~~~G~~~~~Y~gP~Pp~g~g~HRY~f~ly~q~~~l~~~~~~l~~~~~~~R~~F~~~~F~~~~ 161 (190)
T 2iqy_A 83 KFREWHHFLVVNMKGN-DISSGTVLSEYVGSGPPKDTGLHRYVWLVYEQEQPLNCDEPILSNKSGDNRGKFKVESFRKKY 161 (190)
T ss_dssp TTCCEEEEEEEEEETT-BGGGSEEEECCCCCCCCTTSCCEEEEEEEEECSSCCCCCSCCBCTTCCTTCSSCCHHHHHHHT
T ss_pred CcCCEEEEEEeCCChh-ccccCccccceeCCCCcCCCCceEEEEEEEEeCCccCcchhhccCCCcccCCCcCHHHHHHHh
Confidence 9999999999999998 6778999999999999 688999999999999887654 25789999999999999
Q ss_pred CCCCceEEEEEEEeeCCCC
Q 035977 148 DLGLPVAAVYFNAQRETAA 166 (169)
Q Consensus 148 ~L~~pva~~~f~~~~d~~~ 166 (169)
+|+.|||+|||+++||++.
T Consensus 162 ~Lg~pVA~~fF~~q~d~~v 180 (190)
T 2iqy_A 162 HLGAPVAGTCFQAEWDDSV 180 (190)
T ss_dssp TCCSCSEEEEEEECCCTTH
T ss_pred CCCCeeEEEEEEEEccCch
Confidence 9999999999999999863
No 4
>2jyz_A CG7054-PA, GH14779P, PEBP; PEBP/RKIP, molecular modeling, chemical shift variations, titration, unknown function; NMR {Drosophila melanogaster}
Probab=100.00 E-value=3.8e-47 Score=292.94 Aligned_cols=157 Identities=36% Similarity=0.687 Sum_probs=143.5
Q ss_pred CCcccccCCCCCCCeeEEEEEC-CeeecCCcccCcccccCCCeEEEecCCC-CceEEEEEeCCCCCCCCCCCCCeEEEEE
Q 035977 8 GGVIGDVIESFTPSIKMSVTYN-NKQVCNGHELFPSTVVSKPRVEIQGGDM-RSFFTLVMTDPDVPGPSDPYLREHLHWI 85 (169)
Q Consensus 8 ~~iipdv~~~f~P~~~L~V~y~-~~~v~~G~~l~~~~t~~~P~i~~~~~~~-~~~ytlimvDpD~p~~~~~~~~~~lHwl 85 (169)
++||||+|+. .|++.|+|+|+ +..|.+|+.|+++++..+|.|+|++.+. +++|||+|+|||+|++++++.++|+|||
T Consensus 2 ~~vipdvl~~-~P~~~l~V~y~~~~~v~~G~~l~~~~~~~~P~l~~~~~p~~t~~ytlvm~DpDaP~~~~p~~~~~~HWl 80 (179)
T 2jyz_A 2 DDIVPDVLDA-VPAGTIKVIYGDDLEVKQGNELTPTQVKDQPIVSWSGLEGKSNLLTLLMVDPDAPTRQDPKYREILHWS 80 (179)
T ss_dssp CCBTTTTBSS-CCSEECEEESSSSCCBCTTEECCSSCTTSCCEEECTTTCCSCSEEEEEEECCCSSCTTCCSSCCCSCCE
T ss_pred CcccCcCcCC-CCcCeEEEEECCCcccCCCCEeCHHHhccCCeEEEeCCCCCceeEEEEEeCCCCCCCccCCCccEEEEE
Confidence 6899999999 99999999997 5899999999999999999999997654 3999999999999999998899999999
Q ss_pred EecCCCCc-CCCCCceeeccCCCCC--CCCCceEEEEEeeeCCCCCC------CCCCCCCCccHHHHHHHcCCCCceEEE
Q 035977 86 VTDIPGTT-DATFGRELVSYEIPRP--NIGIHRFVFVLFKQTRRQTV------NPPSSRDHFNTRAFAAENDLGLPVAAV 156 (169)
Q Consensus 86 v~ni~~~~-~~~~g~~~~~Y~~P~P--~~g~HRY~flL~~q~~~~~~------~~~~~R~~F~~~~F~~~~~L~~pva~~ 156 (169)
++|||++. ++..|..+++|.||+| ++|.|||+|+||+|+..+.. ..+..|.+||+++|+++++|+.|||+|
T Consensus 81 v~nIp~~~~~l~~g~~~~~Y~gP~Pp~g~g~HRY~f~ly~q~~~l~~~~~l~~~~~~~R~~F~~~~F~~~~~Lg~pvA~~ 160 (179)
T 2jyz_A 81 VVNIPGSNENPSGGHSLADYVGSGPPKDTGLHRYIFLLYRQENKIEETPTISNTTRTGRLNFNARDFAAKHGLGEPIAAN 160 (179)
T ss_dssp EECCCTTSSSTTSSEEEECCCSCCSCGGGCSEEEEEEEEEECSCCCCSSCBCTTCCSSSCCCCTHHHHHHTTCCSCSEEE
T ss_pred EECCCCCccccCcccccccccCCCCCCCCCceEEEEEEEEcCCcCCchhhccCCCcccCCCcCHHHHHHHhCCCCccEEE
Confidence 99999875 5678999999999999 68899999999999987751 135789999999999999999999999
Q ss_pred EEEEeeCCC
Q 035977 157 YFNAQRETA 165 (169)
Q Consensus 157 ~f~~~~d~~ 165 (169)
||+++||++
T Consensus 161 ~F~~q~d~~ 169 (179)
T 2jyz_A 161 YYQAQYDDY 169 (179)
T ss_dssp EEEECCCTH
T ss_pred EEEEEecCc
Confidence 999999985
No 5
>2gzq_A Phosphatidylethanolamine-binding protein; structural genomics, PSI, protein structure initiative; HET: MSE; 1.30A {Plasmodium vivax} PDB: 2r77_A
Probab=100.00 E-value=2.1e-45 Score=287.62 Aligned_cols=160 Identities=26% Similarity=0.408 Sum_probs=141.3
Q ss_pred CCCcccCCcccccCCC--CCCCeeEEEEEC-CeeecCCcccCcccccCCCe-EEEecCCC-CceEEEEEeCCCCCCCCCC
Q 035977 2 LEPLAVGGVIGDVIES--FTPSIKMSVTYN-NKQVCNGHELFPSTVVSKPR-VEIQGGDM-RSFFTLVMTDPDVPGPSDP 76 (169)
Q Consensus 2 ~~~l~~~~iipdv~~~--f~P~~~L~V~y~-~~~v~~G~~l~~~~t~~~P~-i~~~~~~~-~~~ytlimvDpD~p~~~~~ 76 (169)
+++|++++||||+||. |+|++.|+|+|+ +..|.+|+.|++++++.+|. |+|++.+. +++|||+|+|||+|++.++
T Consensus 15 ~~~l~~~~IipDvl~~~~f~p~~~L~V~y~~~~~v~~G~~l~~~~~~~~P~~l~~~~~~~~~~~ytLvm~DPDaP~~~~~ 94 (200)
T 2gzq_A 15 IEELKREKIIPHVFPDENVDLTVDMYISFKSGKEVNHGNILDLAGTGSVPRNIKFSEEPPEDYCYILFMIDPDFPSRRRP 94 (200)
T ss_dssp HHHHHHTTHHHHTSSSSCCCCCCCEEEEEETTEEECSSCEEESTTCSSCCSEEEESSCCCTTEEEEEEEEETTCSCSSCC
T ss_pred HHHHHhCCccCcccCCCCCcceeEEEEEECCCcccCCCCEeCHHHHhCCCceEEEccCCCCCceEEEEEECCCCCCCCCC
Confidence 4679999999999964 999999999998 69999999999999999998 99998644 7999999999999999999
Q ss_pred CCCeEEEEEEecCCCCcCCCCC-----ceeeccCCCCC--CCCCceEEEEEe--eeCCCCCCCC---C-----CCCCCcc
Q 035977 77 YLREHLHWIVTDIPGTTDATFG-----RELVSYEIPRP--NIGIHRFVFVLF--KQTRRQTVNP---P-----SSRDHFN 139 (169)
Q Consensus 77 ~~~~~lHwlv~ni~~~~~~~~g-----~~~~~Y~~P~P--~~g~HRY~flL~--~q~~~~~~~~---~-----~~R~~F~ 139 (169)
+.++|+||+++|||++. ...| ..+++|.||+| ++|.|||+|+|| +|+..+.+.. . .+|.+||
T Consensus 95 ~~~~~~HWlv~nIp~~~-~~~g~~~~~~~~~~Y~gP~Pp~g~g~HRYvF~l~~fkQ~~~~~~~~~p~~~~~~~~~R~~F~ 173 (200)
T 2gzq_A 95 DGRDYVHWAVSGIKSKE-LVKGTDKNCITLLPYVGPSIKKGTGLHRISFILSLVKEENKGNVTGVPLYRGEHYITRVKFN 173 (200)
T ss_dssp TTCSEEEEEEEEECSSE-EETTCCTTCEEEECCCCCCCCTTSCCEEEEEEEEEEEGGGTTCBTTBCCCCCGGGCCTTHHH
T ss_pred CCCCEEEEEEeCCCcCc-ccCCccCCCcceeeeeCCCCcCCCCcceEEEEEEEecccCcccccccCccccccccccCccc
Confidence 99999999999999863 3333 47999999999 788999999985 9998776532 2 3899999
Q ss_pred HH----HHHHHcCCCCceEEEEEEEeeC
Q 035977 140 TR----AFAAENDLGLPVAAVYFNAQRE 163 (169)
Q Consensus 140 ~~----~F~~~~~L~~pva~~~f~~~~d 163 (169)
++ +|++++|| +|||+|||+++++
T Consensus 174 ~~~gv~~F~~~~gL-~pVganfF~~~n~ 200 (200)
T 2gzq_A 174 NCQSAYNVIQMNDM-KIVGFNWCQMRRK 200 (200)
T ss_dssp HTCCHHHHHHHTTC-EEEEEEEEEEECC
T ss_pred cchhhHHHHHHcCC-EEEEEEEEEEecC
Confidence 97 89999999 5899999999974
No 6
>1wpx_B Carboxypeptidase Y inhibitor; carboxypeptidase inhibitor, serine proteinase inhibitor, Pro inhibitor complex; HET: NAG NDG; 2.70A {Saccharomyces cerevisiae} SCOP: b.17.1.1
Probab=100.00 E-value=9.8e-45 Score=287.59 Aligned_cols=161 Identities=32% Similarity=0.520 Sum_probs=142.5
Q ss_pred CCCcccCCcccccCCC--CCCCeeEEEEECC-eeecCCcccCcccccCCCeEEEec----------C-----CCCceEEE
Q 035977 2 LEPLAVGGVIGDVIES--FTPSIKMSVTYNN-KQVCNGHELFPSTVVSKPRVEIQG----------G-----DMRSFFTL 63 (169)
Q Consensus 2 ~~~l~~~~iipdv~~~--f~P~~~L~V~y~~-~~v~~G~~l~~~~t~~~P~i~~~~----------~-----~~~~~ytl 63 (169)
+++|++++||||||+. |.|++.|+|+|++ ..|.+|+.|+++++...|.|+|.. . +.+++|+|
T Consensus 13 ~~~l~~~~IipDvl~~~~F~P~~~L~V~y~~~~~v~~G~~l~~~~t~~~P~v~~~~~~~~~~~~~~~~~~~p~~~~~~~l 92 (220)
T 1wpx_B 13 IDSYKKHGILEDVIHDTSFQPSGILAVEYSSSAPVAMGNTLPTEKARSKPQFQFTFNKQMQKSVPQANAYVPQDDDLFTL 92 (220)
T ss_dssp HHHHHHTTHHHHTSCCTTCCCSEEEEEEEETTEEECSSCBCCGGGGSSCCEEEEEEETTCC------CCCCCCSSCCEEE
T ss_pred HHHHHhCCCCccccCCcCCCCceEEEEEECCCcEeCCCCCcCHHHhcCCCeeEeCCCCCcccccccccccCCCCCceEEE
Confidence 5789999999999998 9999999999996 789999999999999999999982 1 24789999
Q ss_pred EEeCCCCCCCCCCCCCeEEEEEEecCCCCcC---------------C-CCC-ceeeccCCCCC--CCCCceEEEEEeeeC
Q 035977 64 VMTDPDVPGPSDPYLREHLHWIVTDIPGTTD---------------A-TFG-RELVSYEIPRP--NIGIHRFVFVLFKQT 124 (169)
Q Consensus 64 imvDpD~p~~~~~~~~~~lHwlv~ni~~~~~---------------~-~~g-~~~~~Y~~P~P--~~g~HRY~flL~~q~ 124 (169)
+|+|||+|++.++++++|+||+++|||++.. . +.| ..+++|.||+| |+|.|||+|+||+|+
T Consensus 93 vm~DpDaP~~~~p~~~~~~HW~v~nIp~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~Y~gP~Pp~g~g~HRY~f~lya~~ 172 (220)
T 1wpx_B 93 VMTDPDAPSKTDHKWSEFCHLVECDLKLLNEATHETSGATEFFASEFNTKGSNTLIEYMGPAPPKGSGPHRYVFLLYKQP 172 (220)
T ss_dssp EEEESSSSCSSCCTTCSEEEEEEEEEEECC---------CCEEEEEEECTTCEEEECCCCCCCCTTSCCEEEEEEEEECC
T ss_pred EEECCCCCCCCCCCcCcEEEEEEEccCCCccccccccCCCCccceEeecCCccccccccCCCCccCCCCceEEEEEEecC
Confidence 9999999999888889999999999997521 1 235 68899999999 578999999999999
Q ss_pred CCCCC---CCCCCCCCcc-------HHHHHHHcCCCCceEEEEEEEeeC
Q 035977 125 RRQTV---NPPSSRDHFN-------TRAFAAENDLGLPVAAVYFNAQRE 163 (169)
Q Consensus 125 ~~~~~---~~~~~R~~F~-------~~~F~~~~~L~~pva~~~f~~~~d 163 (169)
..+.+ ..+..|.+|+ +++|+++++| .|||+|||++||+
T Consensus 173 ~~l~~~~~~~~~~R~~f~~~~~~f~~~~F~~~~~L-~pVAanfF~~q~~ 220 (220)
T 1wpx_B 173 KGVDSSKFSKIKDRPNWGYGTPATGVGKWAKENNL-QLVASNFFYAETK 220 (220)
T ss_dssp TTCCGGGSCCCCCSBGGGCCSSSCSHHHHHHTTTC-EEEEEEEEEECCC
T ss_pred CcCCccccCCcccccCCCccccchhHHHHHHHhCC-eEEEEEEEEEecC
Confidence 98763 3467899999 9999999999 6899999999996
No 7
>1fux_A Hypothetical 19.5 kDa protein in EMRE-RUS intergenic region; beta protein, unknown function; 1.81A {Escherichia coli} SCOP: b.17.1.2
Probab=99.88 E-value=1.7e-22 Score=153.52 Aligned_cols=96 Identities=23% Similarity=0.396 Sum_probs=77.4
Q ss_pred CeeecCCcccCcccccC---------CCeEEEecCC-CCceEEEEEeCCCCCCCCCCCCCeEEEEEEecCCCCc-CCCCC
Q 035977 30 NKQVCNGHELFPSTVVS---------KPRVEIQGGD-MRSFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTT-DATFG 98 (169)
Q Consensus 30 ~~~v~~G~~l~~~~t~~---------~P~i~~~~~~-~~~~ytlimvDpD~p~~~~~~~~~~lHwlv~ni~~~~-~~~~g 98 (169)
+..+..|+.|+...+.. +|.|+|++.+ .+++|+|+|+|||+|++ ++|+||+++|||++. .+..|
T Consensus 7 S~~~~~g~~ip~~~~~~~~~~~G~n~sP~l~w~~~P~~t~s~ali~~DPDAP~~-----~~~~HW~v~nIp~~~~~l~~g 81 (166)
T 1fux_A 7 SNEIKTGEQLTTSHVFSGFGCEGGNTSPSLTWSGVPEGTKSFAVTVYDPDAPTG-----SGWWHWTVVNIPATVTYLPVD 81 (166)
T ss_dssp CSSCCTTSBCCGGGBCEETTEECCCCCCCEEEECCCTTCCEEEEEEEETTSTTT-----TCEEEEEEEEEETTCCEECTT
T ss_pred ccCcCCcCCCCHHHhccccccCCCCcCCeEEEeCCCCCCeEEEEEEECCCCCCC-----CcEEEeEEeCcCCCcccccCC
Confidence 56688999999988766 9999999864 46999999999999964 479999999999753 11111
Q ss_pred ------------c-------eeeccCCCCC--CCCCceEEEEEeeeCC-CCCCC
Q 035977 99 ------------R-------ELVSYEIPRP--NIGIHRFVFVLFKQTR-RQTVN 130 (169)
Q Consensus 99 ------------~-------~~~~Y~~P~P--~~g~HRY~flL~~q~~-~~~~~ 130 (169)
. ....|.||+| ++|.|||+|+||+|+. .+.+.
T Consensus 82 ~~~~~~~~l~~g~~~g~nd~g~~~Y~GP~PP~g~g~HRY~F~lyald~~~l~l~ 135 (166)
T 1fux_A 82 AGRRDGTKLPTGAVQGRNDFGYAGFGGACPPKGDKPHHYQFKVWALKTEKIPVD 135 (166)
T ss_dssp TTCTTCTTSCTTCEECCCTTSSSSCCCBCCCTTCCCEECEEEEEEESCSCCCCC
T ss_pred ccccccccCCCCcEEeecCCCCccccCCCCcCCCCcEEEEEEEeEeccccCCCC
Confidence 1 4789999999 5668999999999997 57653
No 8
>3n08_A Putative phosphatidylethanolamine-binding protein; eukarytic homolog RAF kinase inhibitor protein (RKIP). csgid structural genomics; 1.25A {Chlamydia trachomatis} SCOP: b.17.1.0
Probab=99.86 E-value=5.7e-21 Score=143.20 Aligned_cols=112 Identities=18% Similarity=0.275 Sum_probs=83.5
Q ss_pred eeecCCcccCcccc----cCCCeEEEecCC-CCceEEEEEeCCCCCCCCCCCCCeEEEEEEecCCCCc-CCCCC------
Q 035977 31 KQVCNGHELFPSTV----VSKPRVEIQGGD-MRSFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTT-DATFG------ 98 (169)
Q Consensus 31 ~~v~~G~~l~~~~t----~~~P~i~~~~~~-~~~~ytlimvDpD~p~~~~~~~~~~lHwlv~ni~~~~-~~~~g------ 98 (169)
..+..|..|+...+ ...|.|+|++.+ .+++|+|+|+|||+|++.++ .++|+||+++|||++. .+..|
T Consensus 9 ~~f~~g~~ip~~~t~~G~n~SP~l~w~~~P~~tks~ali~~DpDAPs~~~~-~~~~~HWvv~nIp~~~~~l~~g~~~g~~ 87 (153)
T 3n08_A 9 QAFSYGRPIPKKYSCQGVGISPPLSFSDVPREAKSLVLIVEDPDVPPSVRE-DGLWIHWIVYNLSPVVSNLAEGAQIFAV 87 (153)
T ss_dssp TTBCTTEECCGGGSTTSCCCCCCEEEECCCTTCCEEEEEEEETTSCTTTCT-TSCEEEEEEEEECTTCCEECTTCCCSSE
T ss_pred CCcCCCCCCCHHHcCCCCCcCcEEEEcCCCCCCeEEEEEEECCCCCCccCC-CCcEEEEEEEcCCCCcccccCCCCCCce
Confidence 34556666665543 468999999864 36899999999999988764 4799999999999853 11111
Q ss_pred -----ceeeccCCCCCCCCCceEEEEEeeeCCCCCCCCCCCCCCccHHHHHHHcC
Q 035977 99 -----RELVSYEIPRPNIGIHRFVFVLFKQTRRQTVNPPSSRDHFNTRAFAAEND 148 (169)
Q Consensus 99 -----~~~~~Y~~P~P~~g~HRY~flL~~q~~~~~~~~~~~R~~F~~~~F~~~~~ 148 (169)
-....|.||+|+.|.|||+|+||+|+..+.+. ..+...++.+...
T Consensus 88 ~g~n~~g~~~Y~GP~PP~g~HrY~F~vyAld~~L~l~-----~~~~~~~l~~a~~ 137 (153)
T 3n08_A 88 QGLNTAGEIGYCPPCPPDAKHRYYFYAYALDVVLSDE-----EGVTKEQLLEAMD 137 (153)
T ss_dssp ECBCTTSSBSCCCCCCSSSCEEEEEEEEEESSCCCCC-----SSCCHHHHHHHHT
T ss_pred EeecCCCCccccCCcCcCCCEEEEEEEEEECCcCCCC-----CCCCHHHHHHHhh
Confidence 14689999999777799999999999887653 2556666665544
No 9
>1fjj_A Hypothetical 17.1 kDa protein in MODC-BIOA intergenic region; PEPB family, lipid binding protein; HET: MSE EPE; 1.66A {Escherichia coli} SCOP: b.17.1.2 PDB: 1vi3_A*
Probab=99.85 E-value=3.9e-21 Score=145.06 Aligned_cols=95 Identities=23% Similarity=0.404 Sum_probs=71.5
Q ss_pred eeecCCcccCccc---------ccCCCeEEEecCC-CCceEEEEEeCCCCCCCCCCCCCeEEEEEEecCCCCcC-CCCCc
Q 035977 31 KQVCNGHELFPST---------VVSKPRVEIQGGD-MRSFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTD-ATFGR 99 (169)
Q Consensus 31 ~~v~~G~~l~~~~---------t~~~P~i~~~~~~-~~~~ytlimvDpD~p~~~~~~~~~~lHwlv~ni~~~~~-~~~g~ 99 (169)
..+..|..|+... -..+|.|+|++.+ .+++|+|+|+|||+|++ ++|+||+++|||++.. +..|.
T Consensus 7 ~~f~~g~~ip~~~~~~~~~~~G~n~sP~l~w~~~P~~t~s~ali~~DPDAP~~-----~~~~HW~v~nIp~~~~~l~~g~ 81 (159)
T 1fjj_A 7 NDLRDGDKLPHRHVFNGMGYDGDNISPHLAWDDVPAGTKSFVVTCYDPDAPTG-----SGWWHWVVVNLPADTRVLPQGF 81 (159)
T ss_dssp SSCCTTSBCCGGGBCSSTTCCCCCCCCCEEEECCCTTCCEEEEEEEETTSTTT-----TCEEEEEEEEEETTCCEECTTG
T ss_pred cCcCCcCCCChhHhccccccCCCCcCCeEEEcCCCCCCeEEEEEEECCCCCCC-----CcEEEEEEEccCCCccccCCCc
Confidence 3445565555542 2558899999863 47999999999999974 4799999999997631 11111
Q ss_pred ------------------eeeccCCCCCCCC-CceEEEEEeeeCC-CCCCC
Q 035977 100 ------------------ELVSYEIPRPNIG-IHRFVFVLFKQTR-RQTVN 130 (169)
Q Consensus 100 ------------------~~~~Y~~P~P~~g-~HRY~flL~~q~~-~~~~~ 130 (169)
....|.||+|+.| .|||+|+||+|+. .+.+.
T Consensus 82 ~~~~~~~~~g~~~g~n~~g~~~Y~GP~PP~g~~HRY~F~lyald~~~l~l~ 132 (159)
T 1fjj_A 82 GSGLVAMPDGVLQTRTDFGKTGYDGAAPPKGETHRYIFTVHALDIERIDVD 132 (159)
T ss_dssp GGTSSCCCTTCEECBCTTSSBSCCCBCCSTTCCEEEEEEEEEESSSCCSCC
T ss_pred ccccccCCCCcEEeecCCCCCcccCCCCcCCCceEEEEEEEEccCcccCCC
Confidence 3789999999666 8999999999997 57663
No 10
>2evv_A Hypothetical protein HP0218; alpha-beta structure, dimer, structural genomics, PSI, prote structure initiative; HET: MSE; 2.59A {Helicobacter pylori}
Probab=99.79 E-value=5.1e-19 Score=138.37 Aligned_cols=118 Identities=16% Similarity=0.192 Sum_probs=81.2
Q ss_pred CcccCcc--cccCCCeEEEecCCCCceEEEEEeCCCCCCCCCCCCCeEEEEEEecCCCCcCCC-----------------
Q 035977 36 GHELFPS--TVVSKPRVEIQGGDMRSFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDAT----------------- 96 (169)
Q Consensus 36 G~~l~~~--~t~~~P~i~~~~~~~~~~ytlimvDpD~p~~~~~~~~~~lHwlv~ni~~~~~~~----------------- 96 (169)
|..+++. .-...|.|+|++.+.+++|+|+|+|||+|+++ ..+|+||+++||+... +.
T Consensus 47 G~~~sP~~~~p~~Sp~L~W~~~~gtks~aLvm~DPDAP~~~---g~~~~HWvv~NI~~~~-l~eg~~~~~~g~~qG~N~~ 122 (207)
T 2evv_A 47 PKAFLNSNGLPTYSPKISWQKVEGAQSYALELIDHDAQKVC---GMPFVHWVVGNIAHNV-LEENASMMDKRIVQGVNSL 122 (207)
T ss_dssp CGGGBCTTSCBCCCCCEEECCCTTCSEEEEEEEETTHHHHH---SSCEEEEEEEEECSSE-ECTTHHHHCSSSEECCCTT
T ss_pred CCCcCCccCCCCccceEEEecCCCCeEEEEEEECCCCCCCC---CCcEEEEEEeCCCCCc-cccCcccCCCCceeccccc
Confidence 5555542 22345679998876679999999999999864 3689999999995331 11
Q ss_pred ---CCcee-------------eccCCCCCCCCCceEEEEEeeeCC-CCCCCCCCCCCCccHHHHHHHcCCCCceEEEEEE
Q 035977 97 ---FGREL-------------VSYEIPRPNIGIHRFVFVLFKQTR-RQTVNPPSSRDHFNTRAFAAENDLGLPVAAVYFN 159 (169)
Q Consensus 97 ---~g~~~-------------~~Y~~P~P~~g~HRY~flL~~q~~-~~~~~~~~~R~~F~~~~F~~~~~L~~pva~~~f~ 159 (169)
.|... ..|.||+|+.|.|||+|+||+|+. .+.+. ..|...++.+...-. .+|-.-.+
T Consensus 123 ~~~~g~~~~~~~~k~~~~~~~~~Y~GP~PP~G~HRYvF~vyALd~~~L~l~-----~~~~~~~l~~am~gH-vLa~a~l~ 196 (207)
T 2evv_A 123 TQGFIRSPLNESEKQRSNLNNSVYIGPMPPNGDHHYLIQVYALDIPKLALK-----APFFLGDLHDKMRNH-IIAIGRKE 196 (207)
T ss_dssp CSCSTTCSSCHHHHHHHHHHTCSCCCCCCSSSCEEEEEEEEEESSSCCCCC-----SSCCHHHHHHHHTTC-EEEEEEEE
T ss_pred ccccccccccccccccccccccccCCCCCCCCcEEEEEEEEEecCccCCCC-----CCCCHHHHHHHhhcC-eEEEEEEE
Confidence 12211 889999998899999999999997 66553 456666666555432 25544444
Q ss_pred EeeC
Q 035977 160 AQRE 163 (169)
Q Consensus 160 ~~~d 163 (169)
..+.
T Consensus 197 g~y~ 200 (207)
T 2evv_A 197 FLYK 200 (207)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 4443
No 11
>3ewt_E Tumor necrosis factor receptor superfamily member 6; calmodulin-peptide complex, FAS, death domain, calcium, calcium binding protein; 2.40A {Homo sapiens}
Probab=32.56 E-value=20 Score=17.99 Aligned_cols=11 Identities=18% Similarity=0.525 Sum_probs=8.6
Q ss_pred cHHHHHHHcCC.
Q 035977 139 NTRAFAAENDL. 149 (169)
Q Consensus 139 ~~~~F~~~~~L. 149 (169)
++.+|++++|+
T Consensus 15 ~Vk~fvR~~gi. 25 (25)
T 3ewt_E 15 QVKGFVRKNGVx 26 (26)
T ss_pred HHHHHHHHcCC.
Confidence 46789988875
No 12
>1ffk_I Ribosomal protein L15E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.12.1.2
Probab=28.38 E-value=38 Score=25.50 Aligned_cols=26 Identities=23% Similarity=0.657 Sum_probs=20.4
Q ss_pred ceEEEEEeCCCCCCCCCCCCCeEEEEEEe
Q 035977 59 SFFTLVMTDPDVPGPSDPYLREHLHWIVT 87 (169)
Q Consensus 59 ~~ytlimvDpD~p~~~~~~~~~~lHwlv~ 87 (169)
+.|=||||||.-|.-.+ .+-+.|+..
T Consensus 127 K~yEVILVDp~H~aIr~---Dp~~nWI~~ 152 (194)
T 1ffk_I 127 KWFEVILVDRDHPAIKS---DPQLSWVSR 152 (194)
T ss_pred eEEEEEEEcCCcHhhhc---Ccccccccc
Confidence 68999999998776543 357889886
No 13
>1k5j_A Nucleoplasmin core; beta-barrel, jellyroll, beta-bulge, pentamer, chaperone; 2.30A {Xenopus laevis} SCOP: b.121.3.1 PDB: 2vtx_A 2vtx_J
Probab=22.47 E-value=53 Score=22.93 Aligned_cols=33 Identities=9% Similarity=0.273 Sum_probs=23.4
Q ss_pred CCccccc-CCCC--CCCeeEEEEECCeeec-CCcccC
Q 035977 8 GGVIGDV-IESF--TPSIKMSVTYNNKQVC-NGHELF 40 (169)
Q Consensus 8 ~~iipdv-~~~f--~P~~~L~V~y~~~~v~-~G~~l~ 40 (169)
.++.|++ |++| .|.+.|+++-|+.+|+ .|+.+-
T Consensus 83 ~s~~p~vsl~g~e~~pPVtF~L~~GSGPVhisGqhlv 119 (124)
T 1k5j_A 83 PSILPMATMVGIELTPPVTFRLKAGSGPLYISGQHVA 119 (124)
T ss_dssp TTTBCEEECCSCEECSCEEEEEEECCCCEEEEEEEEC
T ss_pred ccccccEEeCCceeCCCEEEEEEEcCCCeEEEeEEEE
Confidence 3677776 6654 7888899988877765 566553
Done!