BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035978
(443 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DYP|A Chain A, Crystal Structure Of Lilrb2(Lir2ILT4CD85D) COMPLEXED WITH
Hla-G
Length = 277
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 9/78 (11%)
Query: 260 EERRFPKMH-----LNLQRLLQYFRESKERCSSKHWFSSDDINALEELTGRLRRLKENVG 314
EE R K H +NLQ L Y+ +S+ + W D+ + GRL R E
Sbjct: 63 EETRNTKAHAQTDRMNLQTLRGYYNQSEASSHTLQWMIGCDLGS----DGRLLRGYEQYA 118
Query: 315 FITNRVTAIQAGLDSWQA 332
+ A+ L SW A
Sbjct: 119 YDGKDYLALNEDLRSWTA 136
>pdb|2D31|A Chain A, Crystal Structure Of Disulfide-Linked Hla-G Dimer
pdb|2D31|D Chain D, Crystal Structure Of Disulfide-Linked Hla-G Dimer
Length = 276
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 9/78 (11%)
Query: 260 EERRFPKMH-----LNLQRLLQYFRESKERCSSKHWFSSDDINALEELTGRLRRLKENVG 314
EE R K H +NLQ L Y+ +S+ + W D+ + GRL R E
Sbjct: 62 EETRNTKAHAQTDRMNLQTLRGYYNQSEASSHTLQWMIGCDLGS----DGRLLRGYEQYA 117
Query: 315 FITNRVTAIQAGLDSWQA 332
+ A+ L SW A
Sbjct: 118 YDGKDYLALNEDLRSWTA 135
>pdb|2BBJ|A Chain A, Crystal Structure Of The Cora Mg2+ Transporter
pdb|2BBJ|B Chain B, Crystal Structure Of The Cora Mg2+ Transporter
pdb|2BBJ|D Chain D, Crystal Structure Of The Cora Mg2+ Transporter
pdb|2BBJ|E Chain E, Crystal Structure Of The Cora Mg2+ Transporter
pdb|2BBJ|F Chain F, Crystal Structure Of The Cora Mg2+ Transporter
pdb|2HN2|A Chain A, Crystal Structure Of The Cora Mg2+ Transporter Homologue
From T. Maritima In Complex With Divalent Cations
pdb|2HN2|B Chain B, Crystal Structure Of The Cora Mg2+ Transporter Homologue
From T. Maritima In Complex With Divalent Cations
pdb|2HN2|C Chain C, Crystal Structure Of The Cora Mg2+ Transporter Homologue
From T. Maritima In Complex With Divalent Cations
pdb|2HN2|D Chain D, Crystal Structure Of The Cora Mg2+ Transporter Homologue
From T. Maritima In Complex With Divalent Cations
pdb|2HN2|E Chain E, Crystal Structure Of The Cora Mg2+ Transporter Homologue
From T. Maritima In Complex With Divalent Cations
Length = 354
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 332 AEQINRKLYYLSFLSIALLPLSIITGVFGMNVGGVP 367
+ + N + L+ ++ +PL+ I G++GMN +P
Sbjct: 287 SNKTNEVMKVLTIIATIFMPLTFIAGIYGMNFEYMP 322
>pdb|2IUB|A Chain A, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|B Chain B, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|C Chain C, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|D Chain D, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|E Chain E, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|F Chain F, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|G Chain G, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|H Chain H, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|I Chain I, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|J Chain J, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution
Length = 363
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 332 AEQINRKLYYLSFLSIALLPLSIITGVFGMNVGGVP 367
+ + N + L+ ++ +PL+ I G++GMN +P
Sbjct: 296 SNKTNEVMKVLTIIATIFMPLTFIAGIYGMNFEYMP 331
>pdb|4EEB|A Chain A, Cora Coiled-Coil Mutant Under Mg2+ Absence
pdb|4EEB|B Chain B, Cora Coiled-Coil Mutant Under Mg2+ Absence
pdb|4EEB|C Chain C, Cora Coiled-Coil Mutant Under Mg2+ Absence
pdb|4EEB|D Chain D, Cora Coiled-Coil Mutant Under Mg2+ Absence
pdb|4EEB|E Chain E, Cora Coiled-Coil Mutant Under Mg2+ Absence
pdb|4EED|A Chain A, Cora Coiled-Coil Mutant Under Mg2+ Presence
pdb|4EED|B Chain B, Cora Coiled-Coil Mutant Under Mg2+ Presence
pdb|4EED|C Chain C, Cora Coiled-Coil Mutant Under Mg2+ Presence
pdb|4EED|D Chain D, Cora Coiled-Coil Mutant Under Mg2+ Presence
pdb|4EED|E Chain E, Cora Coiled-Coil Mutant Under Mg2+ Presence
Length = 330
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 332 AEQINRKLYYLSFLSIALLPLSIITGVFGMNVGGVP 367
+ + N + L+ ++ +PL+ I G++GMN +P
Sbjct: 263 SNKTNEVMKVLTIIATIFMPLTFIAGIYGMNFEYMP 298
>pdb|3KYO|A Chain A, Crystal Structure Of Hla-G Presenting Klpaqfyil Peptide
pdb|3KYO|C Chain C, Crystal Structure Of Hla-G Presenting Klpaqfyil Peptide
Length = 273
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 9/78 (11%)
Query: 260 EERRFPKMH-----LNLQRLLQYFRESKERCSSKHWFSSDDINALEELTGRLRRLKENVG 314
EE R K H +NLQ L Y+ +S+ + W D+ + GRL R E
Sbjct: 61 EETRNTKAHAQTDRMNLQTLRGYYNQSEASSHTLQWMIGCDLGS----DGRLIRGYERYA 116
Query: 315 FITNRVTAIQAGLDSWQA 332
+ A+ L SW A
Sbjct: 117 YDGKDYLALNEDLRSWTA 134
>pdb|3KYN|A Chain A, Crystal Structure Of Hla-G Presenting Kgppaaltl Peptide
Length = 275
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 9/78 (11%)
Query: 260 EERRFPKMH-----LNLQRLLQYFRESKERCSSKHWFSSDDINALEELTGRLRRLKENVG 314
EE R K H +NLQ L Y+ +S+ + W D+ + GRL R E
Sbjct: 62 EETRNTKAHAQTDRMNLQTLRGYYNQSEASSHTLQWMIGCDLGS----DGRLIRGYERYA 117
Query: 315 FITNRVTAIQAGLDSWQA 332
+ A+ L SW A
Sbjct: 118 YDGKDYLALNEDLRSWTA 135
>pdb|1YDP|A Chain A, 1.9a Crystal Structure Of Hla-G
Length = 275
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 9/78 (11%)
Query: 260 EERRFPKMH-----LNLQRLLQYFRESKERCSSKHWFSSDDINALEELTGRLRRLKENVG 314
EE R K H +NLQ L Y+ +S+ + W D+ + GRL R E
Sbjct: 61 EETRNTKAHAQTDRMNLQTLRGYYNQSEASSHTLQWMIGCDLGS----DGRLIRGYERYA 116
Query: 315 FITNRVTAIQAGLDSWQA 332
+ A+ L SW A
Sbjct: 117 YDGKDYLALNEDLRSWTA 134
>pdb|1MJG|M Chain M, Crystal Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica (F. Clostridium Thermoaceticum)
pdb|1MJG|N Chain N, Crystal Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica (F. Clostridium Thermoaceticum)
pdb|1MJG|O Chain O, Crystal Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica (F. Clostridium Thermoaceticum)
pdb|1MJG|P Chain P, Crystal Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica (F. Clostridium Thermoaceticum)
Length = 729
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 284 RCSSKHWFSSDDINALEELTGRLRRLKENVGFITNRVTAIQAGLDSWQAEQINRKLYYLS 343
RC FS +++ L +L L R + V + N A AG +W A +I L YL
Sbjct: 66 RC-----FSGEEVKKLGDLPPILNRKRAQVSPVLNFENARLAGEATWYAAEIIEALRYLK 120
Query: 344 F 344
+
Sbjct: 121 Y 121
>pdb|1OAO|C Chain C, Nizn[fe4s4] And Nini[fe4s4] Clusters In Closed And Open
Alpha Subunits Of Acetyl-Coa SynthaseCARBON MONOXIDE
Dehydrogenase
pdb|1OAO|D Chain D, Nizn[fe4s4] And Nini[fe4s4] Clusters In Closed And Open
Alpha Subunits Of Acetyl-Coa SynthaseCARBON MONOXIDE
Dehydrogenase
pdb|2Z8Y|M Chain M, Xenon-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica
pdb|2Z8Y|N Chain N, Xenon-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica
pdb|2Z8Y|O Chain O, Xenon-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica
pdb|2Z8Y|P Chain P, Xenon-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica
pdb|3I01|M Chain M, Native Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL- Coa Synthase From Moorella
Thermoacetica, Water-Bound C-Cluster.
pdb|3I01|N Chain N, Native Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL- Coa Synthase From Moorella
Thermoacetica, Water-Bound C-Cluster.
pdb|3I01|O Chain O, Native Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL- Coa Synthase From Moorella
Thermoacetica, Water-Bound C-Cluster.
pdb|3I01|P Chain P, Native Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL- Coa Synthase From Moorella
Thermoacetica, Water-Bound C-Cluster
Length = 729
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 284 RCSSKHWFSSDDINALEELTGRLRRLKENVGFITNRVTAIQAGLDSWQAEQINRKLYYLS 343
RC FS +++ L +L L R + V + N A AG +W A +I L YL
Sbjct: 66 RC-----FSGEEVKKLGDLPPILNRKRAQVSPVLNFENARLAGEATWYAAEIIEALRYLK 120
Query: 344 F 344
+
Sbjct: 121 Y 121
>pdb|3I04|M Chain M, Cyanide-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase From Moorella
Thermoacetica, Cyanide-Bound C-Cluster
pdb|3I04|N Chain N, Cyanide-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase From Moorella
Thermoacetica, Cyanide-Bound C-Cluster
pdb|3I04|O Chain O, Cyanide-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase From Moorella
Thermoacetica, Cyanide-Bound C-Cluster
pdb|3I04|P Chain P, Cyanide-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase From Moorella
Thermoacetica, Cyanide-Bound C-Cluster
Length = 728
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 284 RCSSKHWFSSDDINALEELTGRLRRLKENVGFITNRVTAIQAGLDSWQAEQINRKLYYLS 343
RC FS +++ L +L L R + V + N A AG +W A +I L YL
Sbjct: 65 RC-----FSGEEVKKLGDLPPILNRKRAQVSPVLNFENARLAGEATWYAAEIIEALRYLK 119
Query: 344 F 344
+
Sbjct: 120 Y 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,852,825
Number of Sequences: 62578
Number of extensions: 530449
Number of successful extensions: 1149
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1143
Number of HSP's gapped (non-prelim): 17
length of query: 443
length of database: 14,973,337
effective HSP length: 102
effective length of query: 341
effective length of database: 8,590,381
effective search space: 2929319921
effective search space used: 2929319921
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)