Query 035978
Match_columns 443
No_of_seqs 217 out of 1624
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 08:12:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035978.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035978hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09546 zntB zinc transporter 100.0 8.7E-53 1.9E-57 424.3 40.1 301 37-396 8-318 (324)
2 COG0598 CorA Mg2+ and Co2+ tra 100.0 4.4E-51 9.6E-56 411.5 37.6 300 38-396 2-316 (322)
3 TIGR00383 corA magnesium Mg(2+ 100.0 4E-48 8.6E-53 388.7 37.4 298 44-396 2-312 (318)
4 PRK11085 magnesium/nickel/coba 100.0 5.6E-44 1.2E-48 357.3 36.2 298 40-396 1-310 (316)
5 PF01544 CorA: CorA-like Mg2+ 100.0 2.2E-41 4.8E-46 333.3 32.1 272 67-393 2-287 (292)
6 KOG2662 Magnesium transporters 98.9 3E-07 6.6E-12 93.5 21.5 99 301-406 308-409 (414)
7 COG0598 CorA Mg2+ and Co2+ tra 90.4 22 0.00048 36.0 18.1 164 229-408 145-321 (322)
8 COG3462 Predicted membrane pro 88.1 1.4 3E-05 37.6 5.7 60 334-398 4-69 (117)
9 PRK09546 zntB zinc transporter 78.3 80 0.0017 31.9 21.0 162 231-408 150-323 (324)
10 COG5487 Small integral membran 78.1 5.7 0.00012 29.2 4.7 23 345-369 4-26 (54)
11 PF01544 CorA: CorA-like Mg2+ 77.5 72 0.0016 30.9 16.4 72 301-374 189-264 (292)
12 PF03904 DUF334: Domain of unk 74.0 89 0.0019 30.3 17.7 35 333-367 145-181 (230)
13 PRK11085 magnesium/nickel/coba 73.5 1.1E+02 0.0024 31.1 17.5 97 304-408 214-315 (316)
14 KOG2662 Magnesium transporters 71.8 48 0.001 34.7 11.4 94 312-413 312-410 (414)
15 PF10267 Tmemb_cc2: Predicted 66.2 1.8E+02 0.0039 30.7 15.8 36 214-250 210-245 (395)
16 PF11902 DUF3422: Protein of u 65.3 1.9E+02 0.0042 30.7 16.9 56 335-397 357-412 (420)
17 PF07798 DUF1640: Protein of u 62.3 1.3E+02 0.0028 27.7 16.9 58 207-264 14-73 (177)
18 TIGR00383 corA magnesium Mg(2+ 61.0 1.8E+02 0.0039 28.9 20.6 102 300-408 212-317 (318)
19 PRK13682 hypothetical protein; 60.0 7.5 0.00016 28.7 2.1 21 345-367 4-24 (51)
20 PF07086 DUF1352: Protein of u 59.7 52 0.0011 31.0 8.2 39 323-361 82-122 (186)
21 KOG2447 Oligosaccharyltransfer 59.2 28 0.00061 34.6 6.5 58 347-415 206-266 (287)
22 PF14163 SieB: Superinfection 58.6 47 0.001 29.7 7.6 43 341-392 6-48 (151)
23 PTZ00370 STEVOR; Provisional 58.5 13 0.00027 37.2 4.0 30 376-409 257-287 (296)
24 TIGR00540 hemY_coli hemY prote 57.6 25 0.00054 36.6 6.4 15 404-418 71-85 (409)
25 TIGR01478 STEVOR variant surfa 55.5 12 0.00027 37.2 3.4 30 376-409 261-291 (295)
26 PF05055 DUF677: Protein of un 55.0 2.6E+02 0.0056 28.8 16.4 101 222-324 64-173 (336)
27 COG5416 Uncharacterized integr 52.5 48 0.001 27.8 5.9 35 362-397 44-78 (98)
28 PF13937 DUF4212: Domain of un 50.4 1.4E+02 0.003 24.3 8.5 40 336-383 12-53 (81)
29 KOG1691 emp24/gp25L/p24 family 49.1 66 0.0014 30.8 7.1 43 302-349 146-188 (210)
30 PF10856 DUF2678: Protein of u 48.8 21 0.00046 30.9 3.4 49 341-396 33-81 (118)
31 PF06609 TRI12: Fungal trichot 48.6 15 0.00031 40.8 3.0 65 331-403 159-223 (599)
32 PF01618 MotA_ExbB: MotA/TolQ/ 48.5 1.8E+02 0.0038 25.5 9.5 31 331-361 47-77 (139)
33 COG3462 Predicted membrane pro 46.4 1.3E+02 0.0028 25.9 7.6 28 377-404 45-72 (117)
34 PF05425 CopD: Copper resistan 45.6 71 0.0015 26.6 6.2 55 337-395 2-57 (105)
35 PF14316 DUF4381: Domain of un 45.2 38 0.00083 30.2 4.7 15 376-390 21-35 (146)
36 PF04011 LemA: LemA family; I 42.8 1.6E+02 0.0034 27.2 8.7 53 305-368 119-171 (186)
37 PRK13454 F0F1 ATP synthase sub 42.6 57 0.0012 30.3 5.6 25 388-412 39-63 (181)
38 PRK10747 putative protoheme IX 42.1 63 0.0014 33.5 6.5 14 405-418 72-85 (398)
39 PHA02849 putative transmembran 42.0 1.2E+02 0.0027 24.4 6.4 11 417-427 54-65 (82)
40 KOG3091 Nuclear pore complex, 39.6 4.6E+02 0.01 28.4 12.2 50 215-264 337-391 (508)
41 TIGR03750 conj_TIGR03750 conju 39.0 86 0.0019 27.0 5.7 57 376-433 45-108 (111)
42 PF04678 DUF607: Protein of un 38.9 3.2E+02 0.0069 25.3 15.7 30 332-363 88-121 (180)
43 PRK13455 F0F1 ATP synthase sub 38.6 97 0.0021 28.6 6.5 18 339-357 1-18 (184)
44 PF10292 7TM_GPCR_Srab: Serpen 37.5 2.4E+02 0.0053 28.3 9.8 74 322-405 218-292 (324)
45 PF10256 Erf4: Golgin subfamil 33.6 65 0.0014 27.5 4.2 25 419-443 92-116 (118)
46 PF04238 DUF420: Protein of un 33.5 3.1E+02 0.0068 24.3 8.6 75 337-418 36-110 (133)
47 PF05817 Ribophorin_II: Oligos 33.1 2.2E+02 0.0047 32.0 9.1 11 359-369 571-581 (636)
48 TIGR03647 Na_symport_sm probab 32.6 2.6E+02 0.0057 22.4 7.8 11 373-384 40-50 (77)
49 PF06210 DUF1003: Protein of u 32.4 2E+02 0.0044 24.5 6.9 54 345-404 4-57 (108)
50 PF15188 CCDC-167: Coiled-coil 32.4 2.8E+02 0.0061 22.7 9.8 54 289-356 31-84 (85)
51 PF13140 DUF3980: Domain of un 32.3 1.2E+02 0.0025 24.3 4.9 30 338-367 10-39 (87)
52 PF11990 DUF3487: Protein of u 31.7 2.1E+02 0.0045 25.0 7.0 41 393-433 64-112 (121)
53 PF06570 DUF1129: Protein of u 31.6 2.5E+02 0.0053 26.4 8.2 8 376-383 111-118 (206)
54 PF04156 IncA: IncA protein; 31.1 99 0.0021 28.5 5.3 25 339-363 4-28 (191)
55 PHA02657 hypothetical protein; 30.6 1.4E+02 0.003 24.5 5.2 21 407-427 56-77 (95)
56 PF05546 She9_MDM33: She9 / Md 27.5 5.6E+02 0.012 24.6 17.0 28 220-249 23-50 (207)
57 PF14715 FixP_N: N-terminal do 27.4 1.2E+02 0.0025 22.5 4.0 33 362-397 9-41 (51)
58 KOG2861 Uncharacterized conser 26.8 4.4E+02 0.0094 27.9 9.5 67 297-363 323-392 (399)
59 PF01578 Cytochrom_C_asm: Cyto 26.6 2.4E+02 0.0051 26.4 7.2 29 332-360 118-147 (214)
60 COG3402 Uncharacterized conser 26.4 1.7E+02 0.0038 26.8 5.7 23 345-367 24-46 (161)
61 PF12794 MscS_TM: Mechanosensi 26.4 1.2E+02 0.0026 31.1 5.4 68 328-403 36-103 (340)
62 PRK00247 putative inner membra 25.9 3E+02 0.0065 29.3 8.3 25 336-360 220-245 (429)
63 COG2322 Predicted membrane pro 25.4 4.4E+02 0.0096 24.5 8.1 76 337-419 77-152 (177)
64 TIGR02230 ATPase_gene1 F0F1-AT 25.3 2.3E+02 0.005 23.9 5.9 27 338-364 41-67 (100)
65 COG1459 PulF Type II secretory 25.3 4.4E+02 0.0095 27.8 9.4 20 347-367 181-200 (397)
66 PF05461 ApoL: Apolipoprotein 25.1 2.3E+02 0.0051 28.8 7.1 31 327-357 97-127 (313)
67 PF08372 PRT_C: Plant phosphor 25.0 3.4E+02 0.0075 24.8 7.5 17 347-363 111-127 (156)
68 PF08654 DASH_Dad2: DASH compl 24.9 4.3E+02 0.0093 22.4 8.6 50 297-347 14-66 (103)
69 PF03268 DUF267: Caenorhabditi 24.9 8E+02 0.017 25.5 11.5 67 331-404 220-287 (353)
70 PF14015 DUF4231: Protein of u 24.6 4E+02 0.0086 21.9 9.6 15 401-415 71-85 (112)
71 PF10027 DUF2269: Predicted in 24.3 3.7E+02 0.0081 23.7 7.6 24 345-368 51-74 (150)
72 PF09972 DUF2207: Predicted me 23.9 2.3E+02 0.005 29.8 7.2 23 342-364 400-422 (511)
73 PHA03240 envelope glycoprotein 23.6 1.1E+02 0.0025 29.4 4.2 21 376-397 212-232 (258)
74 TIGR01598 holin_phiLC3 holin, 23.5 61 0.0013 26.2 2.0 31 337-367 9-39 (78)
75 CHL00045 ccsA cytochrome c bio 23.5 1.3E+02 0.0029 30.5 5.0 32 332-363 216-247 (319)
76 PRK06569 F0F1 ATP synthase sub 23.3 2.2E+02 0.0047 26.0 5.8 28 385-412 15-42 (155)
77 PRK09577 multidrug efflux prot 22.5 3.9E+02 0.0085 31.7 9.3 51 331-391 882-932 (1032)
78 COG1333 ResB ResB protein requ 22.1 1.5E+02 0.0033 31.9 5.2 64 346-411 4-88 (478)
79 CHL00019 atpF ATP synthase CF0 22.0 2.7E+02 0.0059 25.6 6.5 8 356-363 17-24 (184)
80 PF04341 DUF485: Protein of un 21.9 4.4E+02 0.0096 21.4 8.8 55 328-389 8-67 (91)
81 PF01102 Glycophorin_A: Glycop 21.7 1.1E+02 0.0023 26.9 3.4 19 378-396 67-85 (122)
82 PF00873 ACR_tran: AcrB/AcrD/A 21.4 38 0.00081 39.9 0.7 26 341-367 439-464 (1021)
83 COG0497 RecN ATPase involved i 21.2 9.5E+02 0.02 26.6 11.1 49 301-349 346-394 (557)
84 PF06305 DUF1049: Protein of u 21.0 3.2E+02 0.0069 20.5 5.7 10 382-391 24-33 (68)
85 PF07332 DUF1469: Protein of u 20.8 5.1E+02 0.011 21.7 10.2 22 342-363 40-61 (121)
86 PF03188 Cytochrom_B561: Eukar 20.8 4E+02 0.0087 22.8 7.0 37 340-379 39-75 (137)
87 PF03176 MMPL: MMPL family; I 20.3 78 0.0017 31.7 2.6 56 343-405 247-302 (333)
No 1
>PRK09546 zntB zinc transporter; Reviewed
Probab=100.00 E-value=8.7e-53 Score=424.27 Aligned_cols=301 Identities=24% Similarity=0.353 Sum_probs=251.7
Q ss_pred CCCceeeEEEEEcCCCceeeeccccccCCCCceeEEEecCCChhhhhHHHHHHHHHhcCChhhHHHhhhccCCCceeEEE
Q 035978 37 FPGMVRKKAYIFDGHGKYYIKEWDLTDGIGNEFSWYHVELPKGSQKLAQSAQYLIDVLCPPLKLQDILSLVSNGPFCGYV 116 (443)
Q Consensus 37 ~~~~i~~~a~~~~g~g~~~~~~~~~~~~~~~~~~Wi~l~~p~~~e~~~~~~~~l~~~fl~pl~~ed~L~~~e~rpr~e~~ 116 (443)
.+|++ ++|.++|.|+++.++++.. ..+++++|+|+..|+++| .+++.+.++||.+++||+.+.++|||+|.|
T Consensus 8 ~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~Wi~l~~~~~~e-----~~~L~~~~~~~~~~~d~l~~~~~rpk~e~~ 79 (324)
T PRK09546 8 VPDAV--YAWQLDGKGGVKPLEDNDV-IDEAHPCWLHLDYTHPDS-----AQWLATTPLLPDNVRDALAGESTRPRVSRL 79 (324)
T ss_pred CCCcE--EEEEEcCCCCceeCCchhc-ccCCCCEEEEeCCCChhH-----HHHHHhcCCCCHHHHHHHhCCCCCCcEEEE
Confidence 36788 9999999998766555422 235678999999999876 467776568999999999876679999999
Q ss_pred CCEEEEEEeCCCCC--CCc-eEEEEEEEEeCCEEEEEEeCCCCCCCCCcCcccccccCcccccCCCCCCCCCchhHHHHH
Q 035978 117 DGALVFRVNSPGPA--SSN-FTFRIAARITDNSVITVSLGRVPRLGFSPMGQSLLSEIPSVENHRGEPKEGSGIVIREHV 193 (443)
Q Consensus 117 ~~~l~~~v~~~~~~--~~~-~~~~l~~~l~~~~LITv~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~ 193 (443)
++++|++++.+... ... .+.+++|++++++|||+|+++.+.+ +.+
T Consensus 80 ~~~~~iil~~~~~~~~~~~~~~~~l~~~l~~~~lITv~~~~~~~~--------------------------------~~~ 127 (324)
T PRK09546 80 GEGTLITLRCINGNTDERPDQLVAMRVYITDRLIVSTRHRKVLAL--------------------------------DDV 127 (324)
T ss_pred CCEEEEEEEeccCCCCCChhheEEEEEEEeCCEEEEEecCCcccH--------------------------------HHH
Confidence 99998876643221 111 2579999999999999999886542 234
Q ss_pred HHHHHhhcCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------HHHHHHHHHHHhcCcc
Q 035978 194 LEFLLTMNHSEEADNPVPKSLSNLVVHIVDTHVDHLQDVVTKLEIELDSVELELDKG-------GFALKKQMLEERRFPK 266 (443)
Q Consensus 194 ~~~l~~l~~~~~~~~~~~~~~~~ll~~lLd~ivd~y~~~l~~l~~~ld~LE~~v~~~-------~~~lrr~L~~lrR~~~ 266 (443)
.+++. . +..+.++.++++.+++.++|+|.+.++++++++|++|++++.+ ++.+|+++..+||+
T Consensus 128 ~~~~~---~-----~~~~~~~~~ll~~lld~ivd~~~~~l~~i~~~ld~lE~~l~~~~~~~~~~l~~lrr~l~~lrr~-- 197 (324)
T PRK09546 128 VSDLQ---E-----GTGPTDCGGWLVDVCDALTDHASEFIEELHDKIIDLEDNLLDQQIPPRGELALLRKQLIVMRRY-- 197 (324)
T ss_pred HHHHH---h-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH--
Confidence 44442 1 1234568899999999999999999999999999999999753 46788999999988
Q ss_pred hhhhhHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035978 267 MHLNLQRLLQYFRESKERCSSKHWFSSDDINALEELTGRLRRLKENVGFITNRVTAIQAGLDSWQAEQINRKLYYLSFLS 346 (443)
Q Consensus 267 ll~~~~rll~~l~~L~~~~~~~~~l~~e~~~~l~dv~d~~~~l~e~l~~l~e~l~~L~d~~~s~~s~q~N~iMk~LTiiS 346 (443)
+.++| +++.++.. .+..+++++++.+++|+.+|+.++.++++.++++++.+.+.|.+.+++++|++||+||++|
T Consensus 198 --l~p~~--~~l~~L~~--~~~~~~~~~~~~~l~Dv~d~~~~~~~~l~~~~~~~~~l~d~~~s~~s~~~N~~m~~Ltilt 271 (324)
T PRK09546 198 --MAPQR--DVFARLAS--ERLPWMSDDDRRRMQDIADRLGRGLDDLDACIARTAVLADEIASVMAEAMNRRTYTMSLMA 271 (324)
T ss_pred --HHHHH--HHHHHHHh--cCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777 77888874 3456788899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 035978 347 IALLPLSIITGVFGMNVGGVPWTLQEEPKDGFRNVVFLCVAMLLLVLLCF 396 (443)
Q Consensus 347 ~IflP~T~IaGiyGMNf~~mP~~el~~~~yGy~~~l~lm~~i~~~~~~~f 396 (443)
+||+|||||||||||||++|| |++|+ ||||+++++|++++++++++|
T Consensus 272 ~IflPlT~IaGiyGMNf~~mP--el~~~-~gy~~~l~im~~i~~~~~~~f 318 (324)
T PRK09546 272 MVFLPTTFLTGLFGVNLGGIP--GGGWP-FGFSIFCLLLVVLIGGVAWWL 318 (324)
T ss_pred HHHHHHHHHHhhhccccCCCC--CcCCc-chHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 77999 999999999999988776555
No 2
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.4e-51 Score=411.52 Aligned_cols=300 Identities=23% Similarity=0.347 Sum_probs=245.6
Q ss_pred CCceeeEEEEEcCCCceeeeccc-cc--cCCCCceeEEEecCCChhhhhHHHHHHHHHhc-CChhhHHHhhhccCCCcee
Q 035978 38 PGMVRKKAYIFDGHGKYYIKEWD-LT--DGIGNEFSWYHVELPKGSQKLAQSAQYLIDVL-CPPLKLQDILSLVSNGPFC 113 (443)
Q Consensus 38 ~~~i~~~a~~~~g~g~~~~~~~~-~~--~~~~~~~~Wi~l~~p~~~e~~~~~~~~l~~~f-l~pl~~ed~L~~~e~rpr~ 113 (443)
++|+ .+|..+. +.....+.+ .. ...+++++|+|+..|+++| .+.+++.| +||.+++|+++. ++|||+
T Consensus 2 ~~~~--~~y~~~~-~~~~~~~~~~~~~~~~~~~~~~Widl~~p~~~e-----~~~l~~~~~l~~~~~ed~~~~-~~r~r~ 72 (322)
T COG0598 2 PIMV--SAYDLTK-SRLRRLALDEFEELLLPEDGFVWIDLVEPDDEE-----LEWLAKTFGLHPLALEDLLDA-EQRPKV 72 (322)
T ss_pred ccce--eeeecCC-CceeecCchhhhhhhcCCCCeEEEECCCCCHHH-----HHHHHHhcCCCcchHHHHhCc-ccCCce
Confidence 3566 7777662 222333322 11 2345668999999999987 58999999 999999999988 579999
Q ss_pred EEECCEEEEEEeC-C-CCCCCc-eEEEEEEEEeCCEEEEEEeCCCCCCCCCcCcccccccCcccccCCCCCCCCCchhHH
Q 035978 114 GYVDGALVFRVNS-P-GPASSN-FTFRIAARITDNSVITVSLGRVPRLGFSPMGQSLLSEIPSVENHRGEPKEGSGIVIR 190 (443)
Q Consensus 114 e~~~~~l~~~v~~-~-~~~~~~-~~~~l~~~l~~~~LITv~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~ 190 (443)
+.+|+++|++++. + ..+.+. .+.+++|+++++++||+|+.+.+.+.
T Consensus 73 e~~d~~~~i~~~~~~~~~~~~~~~~~~v~~i~~~~~liT~r~~~~~~~~------------------------------- 121 (322)
T COG0598 73 ERYDDYLFIVLRDVNLEEEEDKAETEPVSIIVGKRRLITIRHRPLPAFD------------------------------- 121 (322)
T ss_pred EeeCCEEEEEEEeeccccccccccceeEEEEEeCCEEEEEecCCCccHH-------------------------------
Confidence 9999998876542 2 111111 36799999999999999997765432
Q ss_pred HHHHHHHHhhcCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------HHHHHHHHHHHh
Q 035978 191 EHVLEFLLTMNHSEEADNPVPKSLSNLVVHIVDTHVDHLQDVVTKLEIELDSVELELDKG--------GFALKKQMLEER 262 (443)
Q Consensus 191 ~~~~~~l~~l~~~~~~~~~~~~~~~~ll~~lLd~ivd~y~~~l~~l~~~ld~LE~~v~~~--------~~~lrr~L~~lr 262 (443)
.+.+++. . ....+.++.++++.+++.++|+|++++++++++++++|++++.+ +..+++.+..+|
T Consensus 122 -~vr~r~~---~----~~~~~~~~~~l~~~lld~i~d~~~~~le~i~~~~~~ie~~l~~~~~~~~l~~l~~l~~~l~~lr 193 (322)
T COG0598 122 -RVRERLE---K----GTLLTRGADELLYALLDAIVDNYFPVLEQIEDELEAIEDQLLASTTNEELERLGELRRSLVYLR 193 (322)
T ss_pred -HHHHHHh---c----cccccCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHH
Confidence 2444442 1 12346789999999999999999999999999999999999874 467888899999
Q ss_pred cCcchhhhhHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035978 263 RFPKMHLNLQRLLQYFRESKERCSSKHWFSSDDINALEELTGRLRRLKENVGFITNRVTAIQAGLDSWQAEQINRKLYYL 342 (443)
Q Consensus 263 R~~~ll~~~~rll~~l~~L~~~~~~~~~l~~e~~~~l~dv~d~~~~l~e~l~~l~e~l~~L~d~~~s~~s~q~N~iMk~L 342 (443)
++ +.+++ +++..+.+ ....+++++++.+++|+.+|+.++.++++.++++++++++++.+.+|++||++||+|
T Consensus 194 ~~----l~~~~--~~l~~l~~--~~~~~~~~~~~~~l~dv~~~~~~~~~~~~~~~~~l~~l~d~~~s~is~~~N~imk~L 265 (322)
T COG0598 194 RA----LAPLR--DVLLRLAR--RPLDWLSEEDREYLRDVLDHLTQLIEMLEALRERLSSLLDAYLSLINNNQNEIMKIL 265 (322)
T ss_pred HH----HHhHH--HHHHHHHh--cCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98 56666 66777764 344488999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 035978 343 SFLSIALLPLSIITGVFGMNVGGVPWTLQEEPKDGFRNVVFLCVAMLLLVLLCF 396 (443)
Q Consensus 343 TiiS~IflP~T~IaGiyGMNf~~mP~~el~~~~yGy~~~l~lm~~i~~~~~~~f 396 (443)
|++|+||+|||||||+|||||++|| |++|+ ||||+++++|+++++++++||
T Consensus 266 Ti~s~iflPpTlIagiyGMNf~~mP--el~~~-~Gy~~~l~~m~~~~~~~~~~f 316 (322)
T COG0598 266 TIVSTIFLPPTLITGFYGMNFKGMP--ELDWP-YGYPIALILMLLLALLLYLYF 316 (322)
T ss_pred HHHHHHHHhhHHHHcccccCCCCCc--CCCCc-ccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 88999 999999999999998876655
No 3
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=100.00 E-value=4e-48 Score=388.71 Aligned_cols=298 Identities=19% Similarity=0.230 Sum_probs=239.7
Q ss_pred EEEEEcCCCceeeeccc-cccCCCCceeEEEecCCChhhhhHHHHHHHHHhc-CChhhHHHhhhccCCCceeEEECCEEE
Q 035978 44 KAYIFDGHGKYYIKEWD-LTDGIGNEFSWYHVELPKGSQKLAQSAQYLIDVL-CPPLKLQDILSLVSNGPFCGYVDGALV 121 (443)
Q Consensus 44 ~a~~~~g~g~~~~~~~~-~~~~~~~~~~Wi~l~~p~~~e~~~~~~~~l~~~f-l~pl~~ed~L~~~e~rpr~e~~~~~l~ 121 (443)
.++.++++.. ...+.. .....+++++|+|+.+|+++|. ++++.+.| +||.+++|+++. +++||++.+++++|
T Consensus 2 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~Widl~~p~~~e~----~~~l~~~~~l~~~~~ed~~~~-~~~~k~e~~~~~~~ 75 (318)
T TIGR00383 2 TAIAIEKSRL-IKIPFFEEFSQELNTVLWIDLIEPTDEET----LAKLGQFFAIHPLALEDILNS-PQRPKVEEDEDHLF 75 (318)
T ss_pred EEEEEccccc-eEecchhhhcCCCCceEEEEccCCCcHHH----HHHHHHHcCcCcchHHHhhCC-CCCCcEEEECCEEE
Confidence 4556665533 222222 1133567889999999999772 37899999 999999999988 56999999999998
Q ss_pred EEEeCCCCCC-Cce-EEEEEEEEeCCEEEEEEeCCCCCCCCCcCcccccccCcccccCCCCCCCCCchhHHHHHHHHHHh
Q 035978 122 FRVNSPGPAS-SNF-TFRIAARITDNSVITVSLGRVPRLGFSPMGQSLLSEIPSVENHRGEPKEGSGIVIREHVLEFLLT 199 (443)
Q Consensus 122 ~~v~~~~~~~-~~~-~~~l~~~l~~~~LITv~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (443)
+.++.+..++ +.+ +.+++|++++++|||+|..+.+.+ +.+.+++.
T Consensus 76 i~~~~~~~~~~~~~~~~~l~~~l~~~~liTv~~~~~~~~--------------------------------~~~~~~~~- 122 (318)
T TIGR00383 76 IISFFLNEDEDDTFETEQVSFILGKNLLFTIHERELPAF--------------------------------DSIRERIR- 122 (318)
T ss_pred EEEEeeeccCCCcceeEEEEEEEECCEEEEEEcCCCCcH--------------------------------HHHHHHHH-
Confidence 7655432222 223 679999999999999999876432 22333332
Q ss_pred hcCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------HHHHHHHHHHHhcCcchhhhh
Q 035978 200 MNHSEEADNPVPKSLSNLVVHIVDTHVDHLQDVVTKLEIELDSVELELDKG--------GFALKKQMLEERRFPKMHLNL 271 (443)
Q Consensus 200 l~~~~~~~~~~~~~~~~ll~~lLd~ivd~y~~~l~~l~~~ld~LE~~v~~~--------~~~lrr~L~~lrR~~~ll~~~ 271 (443)
..+ .....++.++++.+++.++|+|.+.+++++++++++|++++.+ ++.+|+++..+|++ +.+
T Consensus 123 --~~~---~~~~~~~~~ll~~il~~ivd~~~~~l~~l~~~~~~le~~l~~~~~~~~l~~l~~l~~~l~~l~~~----l~~ 193 (318)
T TIGR00383 123 --TSQ---KVFEKGADYLLYDIFDAIIDSYFPLLENIEDELEELEDEIISGPTSTLMDEILSLRTELLALRRS----LWP 193 (318)
T ss_pred --hCc---hhhhCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH----HHH
Confidence 111 1123479999999999999999999999999999999999863 46788888888888 566
Q ss_pred HHHHHHHHHHHhhccC-CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035978 272 QRLLQYFRESKERCSS-KHWFSSDDINALEELTGRLRRLKENVGFITNRVTAIQAGLDSWQAEQINRKLYYLSFLSIALL 350 (443)
Q Consensus 272 ~rll~~l~~L~~~~~~-~~~l~~e~~~~l~dv~d~~~~l~e~l~~l~e~l~~L~d~~~s~~s~q~N~iMk~LTiiS~Ifl 350 (443)
++ +++.++.. .+ ..+.+++.+.+++|+.+++.++.++++.++++++.++++|.+.+++++|++||+||++|+||+
T Consensus 194 ~~--~vl~~l~~--~~~~~~~~~~~~~~~~dv~~~~~~l~~~~~~~~e~l~~l~d~~~~~~s~~~N~~mk~LTvvt~Ifl 269 (318)
T TIGR00383 194 LR--DVLNFLLR--KTHLPIQTEEVREYLRDIYDHILSLLEMIETYRELLSSLMDLYLSLVNNKMNEIMKILTVVSTIFI 269 (318)
T ss_pred HH--HHHHHHHc--CCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 67777763 22 245668888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 035978 351 PLSIITGVFGMNVGGVPWTLQEEPKDGFRNVVFLCVAMLLLVLLCF 396 (443)
Q Consensus 351 P~T~IaGiyGMNf~~mP~~el~~~~yGy~~~l~lm~~i~~~~~~~f 396 (443)
|||||||+|||||++|| +++|+ ||||+++++|++++++++++|
T Consensus 270 P~t~IaGiyGMNf~~mP--~l~~~-~gy~~~l~~m~~i~~~~~~~f 312 (318)
T TIGR00383 270 PLTFIAGIYGMNFKFMP--ELNWK-YGYPAVLIVMAVIALGPLIYF 312 (318)
T ss_pred HHHHHHHHHhCCcccCc--cccch-hHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 78999 999999999999998765554
No 4
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=100.00 E-value=5.6e-44 Score=357.32 Aligned_cols=298 Identities=15% Similarity=0.172 Sum_probs=218.5
Q ss_pred ceeeEEEEEcCCCceeeeccccccCCCCceeEEEecCCChhhhhHHHHHHHHHhc-CChhhHHHhhhccCCCceeEEECC
Q 035978 40 MVRKKAYIFDGHGKYYIKEWDLTDGIGNEFSWYHVELPKGSQKLAQSAQYLIDVL-CPPLKLQDILSLVSNGPFCGYVDG 118 (443)
Q Consensus 40 ~i~~~a~~~~g~g~~~~~~~~~~~~~~~~~~Wi~l~~p~~~e~~~~~~~~l~~~f-l~pl~~ed~L~~~e~rpr~e~~~~ 118 (443)
|| .+|..++++. ...+.+..... .+.+|||+..|+++| .+++++.| +| ++..+.+.+.+.+||++.++|
T Consensus 1 Mi--~~~~~~~~~l-~~~~~~~~~~~-~~~vWiDl~~Pt~eE-----~~~v~~~~gl~-~pt~~~~eeIe~ssR~~~~~~ 70 (316)
T PRK11085 1 ML--SAFQLENNRL-TRLEVEESQPL-VDAVWIDLVEPDDDE-----RLRVQSELGQS-LATRPELEDIEASARFFEDED 70 (316)
T ss_pred Ce--EEEecCCCcE-EEecccccccc-CCCEEEEcCCCCHHH-----HHHHHHHhCCC-CCChhhHHHHhhCceEEEECC
Confidence 56 6777655442 33333211112 468999999999987 48888888 66 222344444566799999999
Q ss_pred EEEEEEe--CCCCCCCceEEEEEEEEeCCEEEEEEeCCCCCCCCCcCcccccccCcccccCCCCCCCCCchhHHHHHHHH
Q 035978 119 ALVFRVN--SPGPASSNFTFRIAARITDNSVITVSLGRVPRLGFSPMGQSLLSEIPSVENHRGEPKEGSGIVIREHVLEF 196 (443)
Q Consensus 119 ~l~~~v~--~~~~~~~~~~~~l~~~l~~~~LITv~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 196 (443)
++++... ...+++...+.+++|++++++|||||+++.+.+. .+.++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~v~fil~~~~LvTvr~~~~~~f~--------------------------------~~~~r 118 (316)
T PRK11085 71 GLHIHSFFFFEDAEDHAGNSTVAFTIRDGRLFTLRERELPAFR--------------------------------LYRMR 118 (316)
T ss_pred eEEEEEEEEecCCCCCccceeEEEEEECCEEEEEecCCcchHH--------------------------------HHHHH
Confidence 8775411 1111111135799999999999999999876532 34444
Q ss_pred HHhhcCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----HHHHHHHHHHHhcCc-c---h
Q 035978 197 LLTMNHSEEADNPVPKSLSNLVVHIVDTHVDHLQDVVTKLEIELDSVELELDKG-----GFALKKQMLEERRFP-K---M 267 (443)
Q Consensus 197 l~~l~~~~~~~~~~~~~~~~ll~~lLd~ivd~y~~~l~~l~~~ld~LE~~v~~~-----~~~lrr~L~~lrR~~-~---l 267 (443)
+. ..+ ....++.++++.++|.++|+|+++++.++.++|+++..++.+ ..++-+++.++++.. + .
T Consensus 119 ~~---~~~----~~~~~~~~vl~~Lld~iVd~~ad~lE~~~~~ld~ls~~if~~~~~~~~~~~l~~i~~l~~~~~~~r~~ 191 (316)
T PRK11085 119 AR---SQT----LVDGNAYELLLDLFETKIEQLADEIENIYSDLEKLSRVIMEGHQGDEYDEALSTLAELEDIGWKVRLC 191 (316)
T ss_pred HH---hCC----cccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 42 111 113489999999999999999999999999999999999962 112223344444432 0 1
Q ss_pred hhhhHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035978 268 HLNLQRLLQYFRESKERCSSKHWFSSDDINALEELTGRLRRLKENVGFITNRVTAIQAGLDSWQAEQINRKLYYLSFLSI 347 (443)
Q Consensus 268 l~~~~rll~~l~~L~~~~~~~~~l~~e~~~~l~dv~d~~~~l~e~l~~l~e~l~~L~d~~~s~~s~q~N~iMk~LTiiS~ 347 (443)
+...+|++ ..+.+ ..+.+++....++++.+++.++.++++.++++++.++|++.+.++++||++||+||++|+
T Consensus 192 l~~~~r~l---~~l~~----~~~~~~~~~~~~~~~~~Di~~l~~~~~~~~~~~~~l~d~~~~~i~~~~N~~mk~lTv~s~ 264 (316)
T PRK11085 192 LMDTQRAL---NFLVR----KARLPGGQLEQAREILRDIESLLPHNESLFQKVNFLMQAAMGFINIEQNRIIKIFSVVSV 264 (316)
T ss_pred HHHHHHHH---HHHhh----cccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 23444433 33331 134455556678999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 035978 348 ALLPLSIITGVFGMNVGGVPWTLQEEPKDGFRNVVFLCVAMLLLVLLCF 396 (443)
Q Consensus 348 IflP~T~IaGiyGMNf~~mP~~el~~~~yGy~~~l~lm~~i~~~~~~~f 396 (443)
||+|||+|||+|||||++|| +++|+ ||||+++++|++++++++++|
T Consensus 265 if~pptliagiyGMNf~~mP--~~~~~-~g~~~~l~~~~~~~~~~~~~f 310 (316)
T PRK11085 265 VFLPPTLVASSYGMNFEFMP--ELKWS-FGYPGAIILMILAGLAPYLYF 310 (316)
T ss_pred HHHHHHHHHhhcccccCCCC--CCCCc-HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 88999 999999999999888776554
No 5
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=100.00 E-value=2.2e-41 Score=333.32 Aligned_cols=272 Identities=28% Similarity=0.415 Sum_probs=216.4
Q ss_pred CceeEEEecCCChhhhhHHHHHHHHHhc-CChhhHHHhhhccCCCceeEEECCEEEEEEeCC--CCCCCc-eEEEEEEEE
Q 035978 67 NEFSWYHVELPKGSQKLAQSAQYLIDVL-CPPLKLQDILSLVSNGPFCGYVDGALVFRVNSP--GPASSN-FTFRIAARI 142 (443)
Q Consensus 67 ~~~~Wi~l~~p~~~e~~~~~~~~l~~~f-l~pl~~ed~L~~~e~rpr~e~~~~~l~~~v~~~--~~~~~~-~~~~l~~~l 142 (443)
++++|+|+..|++++ .+++.+.| +||.+++|++++ +++||++.++++++++++.+ ...... ...+++|++
T Consensus 2 ~~~~Wi~~~~~~~~~-----~~~l~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~ 75 (292)
T PF01544_consen 2 DGFVWIDLSGPDDEE-----LEWLAEEFGLHPLTIEDALDP-EERPRIEVFDDYLFIVLRAPEYEEEDDIDEESPLSFIL 75 (292)
T ss_dssp SS-EEEEEETTTCHH-----HHHHHHTTTS-HHHHHHHCCT-SSSSEEEEETTEEEEEEEEEEESTTCCECCEEEEEEEE
T ss_pred CccEEEEEeCCCHHH-----HHHHHHHhCcCHhHHHHHhCC-CcCCEEEEECCeEEEEEEEcchhhcccccccceEEEEE
Confidence 568999999999986 58999999 999999999998 56999999999998765431 111111 234899999
Q ss_pred eCCEEEEEEeCCCCCCCCCcCcccccccCcccccCCCCCCCCCchhHHHHHHHHHHhhcCCcccCCCCCCCHHHHHHHHH
Q 035978 143 TDNSVITVSLGRVPRLGFSPMGQSLLSEIPSVENHRGEPKEGSGIVIREHVLEFLLTMNHSEEADNPVPKSLSNLVVHIV 222 (443)
Q Consensus 143 ~~~~LITv~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ll~~lL 222 (443)
++++|||+|.++.+.+ +.+.+++. . .+..+.++..+++.++
T Consensus 76 ~~~~lit~~~~~~~~~--------------------------------~~~~~~~~---~----~~~~~~~~~~ll~~il 116 (292)
T PF01544_consen 76 GDNFLITVHRDPLPFI--------------------------------DELRERLE---S----RNERPSSPEDLLYAIL 116 (292)
T ss_dssp ETTEEEEEESSSSHCH--------------------------------HHHHHHHH---S----TTCSCSSHHHHHHHHH
T ss_pred ecceEEEEECCCChHH--------------------------------HHHHHHhh---c----cCCCCCCHHHHHHHHH
Confidence 9999999999885432 23444542 1 1335679999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc--------HHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHhhccCCCCCChh
Q 035978 223 DTHVDHLQDVVTKLEIELDSVELELDKG--------GFALKKQMLEERRFPKMHLNLQRLLQYFRESKERCSSKHWFSSD 294 (443)
Q Consensus 223 d~ivd~y~~~l~~l~~~ld~LE~~v~~~--------~~~lrr~L~~lrR~~~ll~~~~rll~~l~~L~~~~~~~~~l~~e 294 (443)
+.+++.|.+.++.++++++++|+.+... +..+|+.+..+++. +.+.+ +++.++.. .....+.+++
T Consensus 117 ~~~~~~~~~~l~~l~~~l~~le~~~~~~~~~~~~~~l~~l~~~l~~l~~~----l~~~~--~~l~~~~~-~~~~~~~~~~ 189 (292)
T PF01544_consen 117 DEIVDDYFEVLEELEDELDELEDELDDRPSNELLRELFDLRRELSRLRRS----LSPLR--EVLQRLLR-RDDSPFISDE 189 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHTTTHHHCCHHHHHHHHHHHHHHH----HHHHH--HHHHHHHH-CCCSTTSHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHH----hhhHH--HHHHHHHH-hhhhhhhhhh
Confidence 9999999999999999999999999542 57789999999988 45555 56655543 2355677778
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCC
Q 035978 295 DINALEELTGRLRRLKENVGFITNRVTAIQAGLDSWQAEQINRKLYYLSFLSIALLPLSIITGVFGMNVGGVPWTLQEEP 374 (443)
Q Consensus 295 ~~~~l~dv~d~~~~l~e~l~~l~e~l~~L~d~~~s~~s~q~N~iMk~LTiiS~IflP~T~IaGiyGMNf~~mP~~el~~~ 374 (443)
...+++|+.+++.++.+.++.++++++.+.+.+.+.+++++|++||+||++|+||+|+|||||+|||||++|| +.+|+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~n~~m~~LT~~t~iflPlt~i~g~fGMN~~~~p--~~~~~ 267 (292)
T PF01544_consen 190 DKEYLRDLLDRIERLLERAESLRERLESLQDLYQSKLSNRQNRVMKVLTIVTAIFLPLTFITGIFGMNFKGMP--ELDWP 267 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHTTSTTS-SS-----SSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccCCC--ccCCc
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999999 66898
Q ss_pred CchHHHH--HHHHHHHHHHHH
Q 035978 375 KDGFRNV--VFLCVAMLLLVL 393 (443)
Q Consensus 375 ~yGy~~~--l~lm~~i~~~~~ 393 (443)
|||+++ +++|++++++++
T Consensus 268 -~g~~~~~~~~~~~~~~~~~~ 287 (292)
T PF01544_consen 268 -YGYFFVIILGLMILVAILLY 287 (292)
T ss_dssp -S-SHHH--HHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHHHHHHH
Confidence 988877 555555555443
No 6
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=98.88 E-value=3e-07 Score=93.46 Aligned_cols=99 Identities=13% Similarity=0.242 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCCCch
Q 035978 301 ELTGRLRRLKENVGFITNRVTAIQAGLDSWQAEQINRKLY---YLSFLSIALLPLSIITGVFGMNVGGVPWTLQEEPKDG 377 (443)
Q Consensus 301 dv~d~~~~l~e~l~~l~e~l~~L~d~~~s~~s~q~N~iMk---~LTiiS~IflP~T~IaGiyGMNf~~mP~~el~~~~yG 377 (443)
.-.-.++.+.+.++.+++.++...|.++-++.++.|+.|. .||+-|..+..-++|+|+||||.. .++.+ .+ |+
T Consensus 308 aYf~qiD~~~nk~~~Lre~IddTEd~InI~LDs~RN~LiqleL~Lt~gT~~~s~~~~va~ifGMNl~-~~l~~--~~-~~ 383 (414)
T KOG2662|consen 308 AYFMQIDSTLNKLESLREYIDDTEDIINIQLDSNRNELIQLELLLTIGTFCLSVFSVVAGIFGMNLP-SSLEE--DH-YA 383 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-chhcc--CC-Ch
Confidence 3334566667777788888888888888888888899885 699999999999999999999997 67644 45 88
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035978 378 FRNVVFLCVAMLLLVLLCFLCPAAYSRIA 406 (443)
Q Consensus 378 y~~~l~lm~~i~~~~~~~f~~~~~y~~~~ 406 (443)
|+++.+++++++++++ +....|.|.|
T Consensus 384 F~~vv~~~~~~~~~lf---~~i~~~~k~k 409 (414)
T KOG2662|consen 384 FKWVVGITFTLCIVLF---VVILGYAKLK 409 (414)
T ss_pred hhhhHHHHHHHHHHHH---HHHHHHHHHh
Confidence 9888877777665433 3334455543
No 7
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=90.39 E-value=22 Score=36.02 Aligned_cols=164 Identities=22% Similarity=0.171 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhh---cHHH-----HHHHHHHHhcCcchhhhhHHHHHHHHHHHhhccCCCCCChhhHHHHH
Q 035978 229 LQDVVTKLEIELDSVELELDK---GGFA-----LKKQMLEERRFPKMHLNLQRLLQYFRESKERCSSKHWFSSDDINALE 300 (443)
Q Consensus 229 y~~~l~~l~~~ld~LE~~v~~---~~~~-----lrr~L~~lrR~~~ll~~~~rll~~l~~L~~~~~~~~~l~~e~~~~l~ 300 (443)
+..+++.+..-++++++++.. .+.. ...++..+||. ++.+.|.+....++.. . .........-.
T Consensus 145 ld~i~d~~~~~le~i~~~~~~ie~~l~~~~~~~~l~~l~~l~~~---l~~lr~~l~~~~~~l~---~--l~~~~~~~~~~ 216 (322)
T COG0598 145 LDAIVDNYFPVLEQIEDELEAIEDQLLASTTNEELERLGELRRS---LVYLRRALAPLRDVLL---R--LARRPLDWLSE 216 (322)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHH---HHHHHHHHHhHHHHHH---H--HHhcCcccCCH
Confidence 445666777777788777643 2222 12233333333 2444554433333331 1 11111102335
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCCCc
Q 035978 301 ELTGRLRRLKENVGFITNRVTAIQAGLDSW----QAEQINRKLYYLSFLSIALLPLSIITGVFGMNVGGVPWTLQEEPKD 376 (443)
Q Consensus 301 dv~d~~~~l~e~l~~l~e~l~~L~d~~~s~----~s~q~N~iMk~LTiiS~IflP~T~IaGiyGMNf~~mP~~el~~~~y 376 (443)
+..+.++.+.+++..+.+.++.+.+..++. .+.-.|+.=.++-++|++-....-.|=|-|. | ||=+...+- .
T Consensus 217 ~~~~~l~dv~~~~~~~~~~~~~~~~~l~~l~d~~~s~is~~~N~imk~LTi~s~iflPpTlIagi-y-GMNf~~mPe--l 292 (322)
T COG0598 217 EDREYLRDVLDHLTQLIEMLEALRERLSSLLDAYLSLINNNQNEIMKILTIVSTIFLPPTLITGF-Y-GMNFKGMPE--L 292 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHcc-c-ccCCCCCcC--C
Confidence 666777788888888888888777666554 3444444447889999999999999999994 4 688754332 3
Q ss_pred hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035978 377 GFR-NVVFLCVAMLLLVLLCFLCPAAYSRIAAW 408 (443)
Q Consensus 377 Gy~-~~l~lm~~i~~~~~~~f~~~~~y~~~~~w 408 (443)
.++ ..++++++++++++ +...|+|+|+|
T Consensus 293 ~~~~Gy~~~l~~m~~~~~----~~~~~frrk~W 321 (322)
T COG0598 293 DWPYGYPIALILMLLLAL----LLYLYFRRKGW 321 (322)
T ss_pred CCcccHHHHHHHHHHHHH----HHHHHHHhcCc
Confidence 444 44555554444443 33458888888
No 8
>COG3462 Predicted membrane protein [Function unknown]
Probab=88.09 E-value=1.4 Score=37.56 Aligned_cols=60 Identities=17% Similarity=0.241 Sum_probs=33.5
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHh--hcccccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 035978 334 QINRKLYYL----SFLSIALLPLSIITG--VFGMNVGGVPWTLQEEPKDGFRNVVFLCVAMLLLVLLCFLC 398 (443)
Q Consensus 334 q~N~iMk~L----TiiS~IflP~T~IaG--iyGMNf~~mP~~el~~~~yGy~~~l~lm~~i~~~~~~~f~~ 398 (443)
+.|+...+| ++++++-+.|+...| +|-||..+|-+- .||.|++.-+|.+++++.++.|++
T Consensus 4 ~ven~~w~ligliavi~~v~li~~~~~gg~~y~~gy~gm~GG-----~yGm~lImpI~~~vvli~lvvfm~ 69 (117)
T COG3462 4 KVENFAWLLIGLIAVIAVVGLIPSGFHGGAFYPGGYRGMMGG-----LYGMWLIMPIFWAVVLIFLVVFMF 69 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCcccCCCccccccc-----hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 345555544 344444444443333 455666556632 288887777777776666666654
No 9
>PRK09546 zntB zinc transporter; Reviewed
Probab=78.28 E-value=80 Score=31.85 Aligned_cols=162 Identities=11% Similarity=0.101 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHHHhh---cHHH----HHHHHHHHhcCcchhhhhHHHHHHHHHHHhhccCCCCCChhhHHHHHHHH
Q 035978 231 DVVTKLEIELDSVELELDK---GGFA----LKKQMLEERRFPKMHLNLQRLLQYFRESKERCSSKHWFSSDDINALEELT 303 (443)
Q Consensus 231 ~~l~~l~~~ld~LE~~v~~---~~~~----lrr~L~~lrR~~~ll~~~~rll~~l~~L~~~~~~~~~l~~e~~~~l~dv~ 303 (443)
.+++.+...++++++++.. .+.. .++++..+||.+ ..+.|.+.....+.. . .........-++..
T Consensus 150 ~ivd~~~~~l~~i~~~ld~lE~~l~~~~~~~~~~l~~lrr~l---~~lrr~l~p~~~~l~---~--L~~~~~~~~~~~~~ 221 (324)
T PRK09546 150 ALTDHASEFIEELHDKIIDLEDNLLDQQIPPRGELALLRKQL---IVMRRYMAPQRDVFA---R--LASERLPWMSDDDR 221 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHH---HHHHHHHHHHHHHHH---H--HHhcCCcccChHHH
Confidence 3455666677777766643 1111 112455555542 455554444444331 1 11111111124555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCCCchHH
Q 035978 304 GRLRRLKENVGFITNRVTAIQAGLD---SWQAEQINRKL-YYLSFLSIALLPLSIITGVFGMNVGGVPWTLQEEPKDGFR 379 (443)
Q Consensus 304 d~~~~l~e~l~~l~e~l~~L~d~~~---s~~s~q~N~iM-k~LTiiS~IflP~T~IaGiyGMNf~~mP~~el~~~~yGy~ 379 (443)
..++.+.+++..+.+.++.+.+... ...+..+|+.| .++-++|++-....-.|=|-|. | ||=+...+.. .++
T Consensus 222 ~~l~Dv~d~~~~~~~~l~~~~~~~~~l~d~~~s~~s~~~N~~m~~Ltilt~IflPlT~IaGi-y-GMNf~~mPel--~~~ 297 (324)
T PRK09546 222 RRMQDIADRLGRGLDDLDACIARTAVLADEIASVMAEAMNRRTYTMSLMAMVFLPTTFLTGL-F-GVNLGGIPGG--GWP 297 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h-ccccCCCCCc--CCc
Confidence 6667777777777777777665332 23334444444 4455677766655555667775 5 5877544432 344
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035978 380 -NVVFLCVAMLLLVLLCFLCPAAYSRIAAW 408 (443)
Q Consensus 380 -~~l~lm~~i~~~~~~~f~~~~~y~~~~~w 408 (443)
.++++++++++++++.+ .|+|+|+|
T Consensus 298 ~gy~~~l~im~~i~~~~~----~~fkrk~W 323 (324)
T PRK09546 298 FGFSIFCLLLVVLIGGVA----WWLKRSKW 323 (324)
T ss_pred chHHHHHHHHHHHHHHHH----HHHHhccc
Confidence 44444445444444333 37777777
No 10
>COG5487 Small integral membrane protein [Function unknown]
Probab=78.06 E-value=5.7 Score=29.20 Aligned_cols=23 Identities=26% Similarity=0.674 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhhcccccCCCCCC
Q 035978 345 LSIALLPLSIITGVFGMNVGGVPWT 369 (443)
Q Consensus 345 iS~IflP~T~IaGiyGMNf~~mP~~ 369 (443)
|+.||+...+|+|.+| |.++.++
T Consensus 4 waliFlvialIa~~lG--FgGiaga 26 (54)
T COG5487 4 WALIFLVIALIAGALG--FGGIAGA 26 (54)
T ss_pred HHHHHHHHHHHHHHhC--cccHHHH
Confidence 7899999999999999 7777743
No 11
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=77.51 E-value=72 Score=30.90 Aligned_cols=72 Identities=22% Similarity=0.256 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCC
Q 035978 301 ELTGRLRRLKENVGFITNRVTAIQAGLDSWQA----EQINRKLYYLSFLSIALLPLSIITGVFGMNVGGVPWTLQEEP 374 (443)
Q Consensus 301 dv~d~~~~l~e~l~~l~e~l~~L~d~~~s~~s----~q~N~iMk~LTiiS~IflP~T~IaGiyGMNf~~mP~~el~~~ 374 (443)
+....+..+.++++.+.+.++.+.+...+..+ ...|+.=+++..+|++-+...=+|=+=|. | ||-+....+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~n~~m~~LT~~t~iflPlt~i~g~-f-GMN~~~~p~~ 264 (292)
T PF01544_consen 189 EDKEYLRDLLDRIERLLERAESLRERLESLQDLYQSKLSNRQNRVMKVLTIVTAIFLPLTFITGI-F-GMNFKGMPEL 264 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHTTS-T-TS-SS---SS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-hCCccCCCcc
Confidence 34455677777777788888777766655543 33344446666666666666444555553 4 5876555443
No 12
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=73.99 E-value=89 Score=30.26 Aligned_cols=35 Identities=6% Similarity=0.080 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc--cccCCCC
Q 035978 333 EQINRKLYYLSFLSIALLPLSIITGVFG--MNVGGVP 367 (443)
Q Consensus 333 ~q~N~iMk~LTiiS~IflP~T~IaGiyG--MNf~~mP 367 (443)
.+++..++=++++-+||+--++|.-+-| |+|=++|
T Consensus 145 k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~v~ 181 (230)
T PF03904_consen 145 KRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLHVD 181 (230)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhhHH
Confidence 4457777777777777777776664433 5554433
No 13
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=73.48 E-value=1.1e+02 Score=31.12 Aligned_cols=97 Identities=12% Similarity=0.098 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCCCchHH
Q 035978 304 GRLRRLKENVGFITNRVTAIQAGLDSW----QAEQINRKLYYLSFLSIALLPLSIITGVFGMNVGGVPWTLQEEPKDGFR 379 (443)
Q Consensus 304 d~~~~l~e~l~~l~e~l~~L~d~~~s~----~s~q~N~iMk~LTiiS~IflP~T~IaGiyGMNf~~mP~~el~~~~yGy~ 379 (443)
+++..+.++++.+.+.++.+.+...+. .+...|+.=.++-++|++.....-.|=|-|+ | ||-+..... ..++
T Consensus 214 ~~~~~~~~Di~~l~~~~~~~~~~~~~l~d~~~~~i~~~~N~~mk~lTv~s~if~pptliagi-y-GMNf~~mP~--~~~~ 289 (316)
T PRK11085 214 EQAREILRDIESLLPHNESLFQKVNFLMQAAMGFINIEQNRIIKIFSVVSVVFLPPTLVASS-Y-GMNFEFMPE--LKWS 289 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh-c-ccccCCCCC--CCCc
Confidence 556677777877788777777655544 4445555567888999999988888989896 5 587754432 3444
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 035978 380 NVVF-LCVAMLLLVLLCFLCPAAYSRIAAW 408 (443)
Q Consensus 380 ~~l~-lm~~i~~~~~~~f~~~~~y~~~~~w 408 (443)
+.+. ++++++++++ .+.+|.|+|+|
T Consensus 290 ~g~~~~l~~~~~~~~----~~~~~f~rk~W 315 (316)
T PRK11085 290 FGYPGAIILMILAGL----APYLYFKRKNW 315 (316)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHccc
Confidence 3333 3333332222 23458888877
No 14
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=71.84 E-value=48 Score=34.75 Aligned_cols=94 Identities=12% Similarity=0.172 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--ccCCCCCCCCCCCCchHHHHHHHHH
Q 035978 312 NVGFITNRVTAIQAGL---DSWQAEQINRKLYYLSFLSIALLPLSIITGVFGM--NVGGVPWTLQEEPKDGFRNVVFLCV 386 (443)
Q Consensus 312 ~l~~l~e~l~~L~d~~---~s~~s~q~N~iMk~LTiiS~IflP~T~IaGiyGM--Nf~~mP~~el~~~~yGy~~~l~lm~ 386 (443)
.+|.+.++++.+.+.+ ...++.+++..=.-|--+-..+...||..|+|++ ++-+|-. +..|. -.=+.++.+..
T Consensus 312 qiD~~~nk~~~Lre~IddTEd~InI~LDs~RN~LiqleL~Lt~gT~~~s~~~~va~ifGMNl-~~~l~-~~~~~F~~vv~ 389 (414)
T KOG2662|consen 312 QIDSTLNKLESLREYIDDTEDIINIQLDSNRNELIQLELLLTIGTFCLSVFSVVAGIFGMNL-PSSLE-EDHYAFKWVVG 389 (414)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-cchhc-cCCChhhhhHH
Confidence 4455555555555443 4457778888888999999999999999999998 3334543 22233 33445544433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035978 387 AMLLLVLLCFLCPAAYSRIAAWQRRRA 413 (443)
Q Consensus 387 ~i~~~~~~~f~~~~~y~~~~~w~~~~~ 413 (443)
+.++ .+..+|...-+|-+.+.
T Consensus 390 ~~~~------~~~~lf~~i~~~~k~kr 410 (414)
T KOG2662|consen 390 ITFT------LCIVLFVVILGYAKLKR 410 (414)
T ss_pred HHHH------HHHHHHHHHHHHHHHhh
Confidence 3322 23456777666655443
No 15
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=66.18 E-value=1.8e+02 Score=30.65 Aligned_cols=36 Identities=8% Similarity=0.219 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 035978 214 LSNLVVHIVDTHVDHLQDVVTKLEIELDSVELELDKG 250 (443)
Q Consensus 214 ~~~ll~~lLd~ivd~y~~~l~~l~~~ld~LE~~v~~~ 250 (443)
....+..+.+.+ .........+++.++.|...+..+
T Consensus 210 ~~~~l~~~~~el-~eik~~~~~L~~~~e~Lk~~~~~e 245 (395)
T PF10267_consen 210 QNLGLQKILEEL-REIKESQSRLEESIEKLKEQYQRE 245 (395)
T ss_pred ccchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555 445666777888888888877665
No 16
>PF11902 DUF3422: Protein of unknown function (DUF3422); InterPro: IPR021830 This family of proteins are functionally uncharacterised. This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 426 to 444 amino acids in length.
Probab=65.33 E-value=1.9e+02 Score=30.69 Aligned_cols=56 Identities=20% Similarity=0.246 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 035978 335 INRKLYYLSFLSIALLPLSIITGVFGMNVGGVPWTLQEEPKDGFRNVVFLCVAMLLLVLLCFL 397 (443)
Q Consensus 335 ~N~iMk~LTiiS~IflP~T~IaGiyGMNf~~mP~~el~~~~yGy~~~l~lm~~i~~~~~~~f~ 397 (443)
+.++.-=|+++++-+-.. |+.|.=++++. ...+| +.=-++.++++-++++.+++++
T Consensus 357 LQqtVEGLSVvAIsYY~v----gL~~y~~k~l~--~~g~~-~~~~l~~g~~vP~v~~~vw~~~ 412 (420)
T PF11902_consen 357 LQQTVEGLSVVAISYYVV----GLLGYLLKGLK--AAGLP-VDPELATGLAVPVVLLAVWLGV 412 (420)
T ss_pred HHHHhhhHHHHHHHHHHH----HHHHHHHhhHh--hcCCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 334455578777766544 44455455555 32344 4444556666666665554443
No 17
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=62.35 E-value=1.3e+02 Score=27.71 Aligned_cols=58 Identities=14% Similarity=0.192 Sum_probs=29.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhcHHHHHHHHHHHhcC
Q 035978 207 DNPVPKSLSNLVVHIVDTHVDHLQDVVTKLE--IELDSVELELDKGGFALKKQMLEERRF 264 (443)
Q Consensus 207 ~~~~~~~~~~ll~~lLd~ivd~y~~~l~~l~--~~ld~LE~~v~~~~~~lrr~L~~lrR~ 264 (443)
.|..+..+..++..+.+.+.++...+-..+- .+++..+..+......+|.++..+++.
T Consensus 14 ~Gft~~QAe~i~~~l~~~l~~~~~~~~~~~vtk~d~e~~~~~~~a~~~eLr~el~~~~k~ 73 (177)
T PF07798_consen 14 AGFTEEQAEAIMKALREVLNDSLEKVAQDLVTKSDLENQEYLFKAAIAELRSELQNSRKS 73 (177)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555666666666666666544433332 333333333333445566666655554
No 18
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=61.05 E-value=1.8e+02 Score=28.93 Aligned_cols=102 Identities=18% Similarity=0.217 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCCC
Q 035978 300 EELTGRLRRLKENVGFITNRVTAIQAGLDSWQ----AEQINRKLYYLSFLSIALLPLSIITGVFGMNVGGVPWTLQEEPK 375 (443)
Q Consensus 300 ~dv~d~~~~l~e~l~~l~e~l~~L~d~~~s~~----s~q~N~iMk~LTiiS~IflP~T~IaGiyGMNf~~mP~~el~~~~ 375 (443)
.+....+..+.++++.+.+.++.+.+...+.+ +...|+.=+++-.+|++-+..+-.|=|=|. | ||=+...+..
T Consensus 212 ~~~~~~~~dv~~~~~~l~~~~~~~~e~l~~l~d~~~~~~s~~~N~~mk~LTvvt~IflP~t~IaGi-y-GMNf~~mP~l- 288 (318)
T TIGR00383 212 EEVREYLRDIYDHILSLLEMIETYRELLSSLMDLYLSLVNNKMNEIMKILTVVSTIFIPLTFIAGI-Y-GMNFKFMPEL- 288 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-hCCcccCccc-
Confidence 44555666777778888888877776655543 444445557889999999999999999996 5 5887555443
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035978 376 DGFRNVVFLCVAMLLLVLLCFLCPAAYSRIAAW 408 (443)
Q Consensus 376 yGy~~~l~lm~~i~~~~~~~f~~~~~y~~~~~w 408 (443)
..-|.++++++++++++++ .+.|.|+|+|
T Consensus 289 ~~~~gy~~~l~~m~~i~~~----~~~~fkrk~W 317 (318)
T TIGR00383 289 NWKYGYPAVLIVMAVIALG----PLIYFRRKGW 317 (318)
T ss_pred cchhHHHHHHHHHHHHHHH----HHHHHHHcCC
Confidence 3345555555555544443 4458888888
No 19
>PRK13682 hypothetical protein; Provisional
Probab=59.96 E-value=7.5 Score=28.71 Aligned_cols=21 Identities=33% Similarity=0.767 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhhcccccCCCC
Q 035978 345 LSIALLPLSIITGVFGMNVGGVP 367 (443)
Q Consensus 345 iS~IflP~T~IaGiyGMNf~~mP 367 (443)
|+.+|+...+|+|++| |.++-
T Consensus 4 waliFliiA~iA~~lG--F~GiA 24 (51)
T PRK13682 4 WAIIFLVIALIAAVLG--FGGIA 24 (51)
T ss_pred HHHHHHHHHHHHHHhc--cchHH
Confidence 7899999999999999 66555
No 20
>PF07086 DUF1352: Protein of unknown function (DUF1352); InterPro: IPR009787 This family consists of several hypothetical eukaryotic proteins of around 190 residues in length. The function of this family is unknown.
Probab=59.74 E-value=52 Score=30.97 Aligned_cols=39 Identities=18% Similarity=0.040 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhccc
Q 035978 323 IQAGLDSWQAEQINRK--LYYLSFLSIALLPLSIITGVFGM 361 (443)
Q Consensus 323 L~d~~~s~~s~q~N~i--Mk~LTiiS~IflP~T~IaGiyGM 361 (443)
+.-.+....+-+-|++ |+.-.+-+.+|..++++.|.++|
T Consensus 82 ~ip~~~G~~s~~rN~i~~l~~y~~~~~~~gl~pl~~g~~~~ 122 (186)
T PF07086_consen 82 LIPSLLGLLSLRRNNISLLRLYMIGSSLFGLLPLIYGAMYY 122 (186)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444543 34445566666566666666664
No 21
>KOG2447 consensus Oligosaccharyltransferase, delta subunit (ribophorin II) [Posttranslational modification, protein turnover, chaperones]
Probab=59.23 E-value=28 Score=34.56 Aligned_cols=58 Identities=19% Similarity=0.379 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhc---ccccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 035978 347 IALLPLSIITGVF---GMNVGGVPWTLQEEPKDGFRNVVFLCVAMLLLVLLCFLCPAAYSRIAAWQRRRAMR 415 (443)
Q Consensus 347 ~IflP~T~IaGiy---GMNf~~mP~~el~~~~yGy~~~l~lm~~i~~~~~~~f~~~~~y~~~~~w~~~~~~~ 415 (443)
.|+.|+-.+-++| |-||.++|.. | . +++++-+.++++.+++|++ |-+.+-++..+...
T Consensus 206 iiv~pll~Llv~W~klg~Nv~n~pss----~-~---s~~~Fh~gi~g~~vL~f~y---WlqlsmFqtL~yla 266 (287)
T KOG2447|consen 206 IIVSPLLGLLVLWLKLGANVSNFPSS----P-T---STLGFHAGIAGILVLFFVY---WLQLSMFQTLKYLA 266 (287)
T ss_pred HHHHHHHHHHHHHHHhhhhhccCCCC----C-c---hhhhhhhHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 4455555555554 6899999943 3 2 2344455555555566654 66666666666554
No 22
>PF14163 SieB: Superinfection exclusion protein B
Probab=58.59 E-value=47 Score=29.67 Aligned_cols=43 Identities=9% Similarity=-0.075 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCCCchHHHHHHHHHHHHHHH
Q 035978 341 YLSFLSIALLPLSIITGVFGMNVGGVPWTLQEEPKDGFRNVVFLCVAMLLLV 392 (443)
Q Consensus 341 ~LTiiS~IflP~T~IaGiyGMNf~~mP~~el~~~~yGy~~~l~lm~~i~~~~ 392 (443)
.++..+.+|+|-+++..++==||. .. |++|+.+++.+.++.++
T Consensus 6 ~i~~~~llf~P~~~~~~l~l~~~~--------~~-y~~~i~~~fl~s~s~li 48 (151)
T PF14163_consen 6 IIFSGLLLFLPESLLEWLNLDKFE--------IK-YQPWIGLIFLFSVSYLI 48 (151)
T ss_pred HHHHHHHHHCCHHHHHHhCcchHH--------Hh-cchHHHHHHHHHHHHHH
Confidence 455566778999998876443442 12 66776666655555543
No 23
>PTZ00370 STEVOR; Provisional
Probab=58.46 E-value=13 Score=37.24 Aligned_cols=30 Identities=30% Similarity=0.701 Sum_probs=15.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 035978 376 DGFRNVVFLCVAMLLLVLLCFLCPAAYSRIA-AWQ 409 (443)
Q Consensus 376 yGy~~~l~lm~~i~~~~~~~f~~~~~y~~~~-~w~ 409 (443)
||--+..++.++++++++++| +|.++| +|.
T Consensus 257 ygiaalvllil~vvliilYiw----lyrrRK~swk 287 (296)
T PTZ00370 257 YGIAALVLLILAVVLIILYIW----LYRRRKNSWK 287 (296)
T ss_pred cHHHHHHHHHHHHHHHHHHHH----HHHhhcchhH
Confidence 776544444444444444444 466653 564
No 24
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=57.59 E-value=25 Score=36.61 Aligned_cols=15 Identities=20% Similarity=0.390 Sum_probs=9.3
Q ss_pred HHHHHHHHHhhhhhc
Q 035978 404 RIAAWQRRRAMRRSW 418 (443)
Q Consensus 404 ~~~~w~~~~~~~~~w 418 (443)
..+.|++.|..+|.-
T Consensus 71 ~~~~~~~~r~~~k~~ 85 (409)
T TIGR00540 71 HSRGWFSGRKRRKAQ 85 (409)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345777776665544
No 25
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=55.45 E-value=12 Score=37.23 Aligned_cols=30 Identities=23% Similarity=0.668 Sum_probs=14.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 035978 376 DGFRNVVFLCVAMLLLVLLCFLCPAAYSRIA-AWQ 409 (443)
Q Consensus 376 yGy~~~l~lm~~i~~~~~~~f~~~~~y~~~~-~w~ 409 (443)
||--+..++.++++++++++| +|.++| +|.
T Consensus 261 cgiaalvllil~vvliiLYiW----lyrrRK~swk 291 (295)
T TIGR01478 261 YGIAALVLIILTVVLIILYIW----LYRRRKKSWK 291 (295)
T ss_pred cHHHHHHHHHHHHHHHHHHHH----HHHhhccccc
Confidence 776544444444444444444 466553 553
No 26
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=54.99 E-value=2.6e+02 Score=28.82 Aligned_cols=101 Identities=6% Similarity=0.072 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcH---HHHHHHHHHHhcCcchh---hhh---HHHHHHHHHHHhhccCCCCCC
Q 035978 222 VDTHVDHLQDVVTKLEIELDSVELELDKGG---FALKKQMLEERRFPKMH---LNL---QRLLQYFRESKERCSSKHWFS 292 (443)
Q Consensus 222 Ld~ivd~y~~~l~~l~~~ld~LE~~v~~~~---~~lrr~L~~lrR~~~ll---~~~---~rll~~l~~L~~~~~~~~~l~ 292 (443)
+..++..|++.-.+--+-.+.|+..+.+.. ..+++.+..+-+-...- ... ...++.|..+.. ..+|+-+
T Consensus 64 L~~Lv~~YFd~S~~a~~~C~~L~k~I~~aR~~~~~I~~al~~~~~e~~~~d~g~~~~~~~~tl~eL~~F~~--~~NPFs~ 141 (336)
T PF05055_consen 64 LFRLVSDYFDSSLEASDFCEALLKCIHRARDNYLPIRRALKQFEKESLDTDVGVSQKKYDKTLEELKKFKA--AGNPFSD 141 (336)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhccccccccccchhHHHHHHHHHhhhh--cCCCCCc
Confidence 456677777777777777777777665421 11222222222110000 000 112233444432 2344444
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035978 293 SDDINALEELTGRLRRLKENVGFITNRVTAIQ 324 (443)
Q Consensus 293 ~e~~~~l~dv~d~~~~l~e~l~~l~e~l~~L~ 324 (443)
+.....|++++++...+++.++..+.+++.-.
T Consensus 142 ~~~~~~F~~i~~~~~~Ll~kL~~~k~Kl~kkl 173 (336)
T PF05055_consen 142 EEFFHQFQSIHDQQSSLLEKLDSRKKKLRKKL 173 (336)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33678999999999999999888888776544
No 27
>COG5416 Uncharacterized integral membrane protein [Function unknown]
Probab=52.49 E-value=48 Score=27.80 Aligned_cols=35 Identities=11% Similarity=0.115 Sum_probs=21.1
Q ss_pred ccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 035978 362 NVGGVPWTLQEEPKDGFRNVVFLCVAMLLLVLLCFL 397 (443)
Q Consensus 362 Nf~~mP~~el~~~~yGy~~~l~lm~~i~~~~~~~f~ 397 (443)
|.+..++.-+-|. |-+|..++++.......++.++
T Consensus 44 Nt~~V~~~~lfg~-~~~PLilvil~s~v~G~Li~~~ 78 (98)
T COG5416 44 NTDSVEFNYLFGQ-WELPLILVILGAAVVGALIAMF 78 (98)
T ss_pred ccCceEEEeecch-hhhhHHHHHHHHHHHHHHHHHH
Confidence 8876665544565 6788777766655554444443
No 28
>PF13937 DUF4212: Domain of unknown function (DUF4212)
Probab=50.38 E-value=1.4e+02 Score=24.29 Aligned_cols=40 Identities=15% Similarity=0.185 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHH-HHHH-hhcccccCCCCCCCCCCCCchHHHHHH
Q 035978 336 NRKLYYLSFLSIALLPL-SIIT-GVFGMNVGGVPWTLQEEPKDGFRNVVF 383 (443)
Q Consensus 336 N~iMk~LTiiS~IflP~-T~Ia-GiyGMNf~~mP~~el~~~~yGy~~~l~ 383 (443)
+-+...|.+|.++-... .+.+ .+=++.|.+ +| .|||++-=
T Consensus 12 rl~~~lL~iW~vvsfg~~~lfa~~Ln~~~~~G-------fP-lgfw~aaQ 53 (81)
T PF13937_consen 12 RLIAILLAIWFVVSFGVGILFADELNQITFGG-------FP-LGFWFAAQ 53 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCeeCC-------CC-hHHHHHHH
Confidence 34445566665433222 3322 332444433 55 89986543
No 29
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.13 E-value=66 Score=30.76 Aligned_cols=43 Identities=19% Similarity=0.406 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035978 302 LTGRLRRLKENVGFITNRVTAIQAGLDSWQAEQINRKLYYLSFLSIAL 349 (443)
Q Consensus 302 v~d~~~~l~e~l~~l~e~l~~L~d~~~s~~s~q~N~iMk~LTiiS~If 349 (443)
+.|-+..+.+++..+++|=+.+++. ++.+|..|..|+++|.+.
T Consensus 146 Led~~~sI~~e~~YLr~REeemr~~-----nesTNsrv~~fSi~Sl~v 188 (210)
T KOG1691|consen 146 LEDLVESIHEEMYYLREREEEMRNT-----NESTNSRVAWFSILSLVV 188 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-----hhhhhhHHHHHHHHHHHH
Confidence 3333445566666666666666554 888999999999888654
No 30
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=48.76 E-value=21 Score=30.89 Aligned_cols=49 Identities=16% Similarity=0.322 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 035978 341 YLSFLSIALLPLSIITGVFGMNVGGVPWTLQEEPKDGFRNVVFLCVAMLLLVLLCF 396 (443)
Q Consensus 341 ~LTiiS~IflP~T~IaGiyGMNf~~mP~~el~~~~yGy~~~l~lm~~i~~~~~~~f 396 (443)
++.++|+++.-.|+|.|++ |...| ..|.+=|+++.++++.++.+++++|
T Consensus 33 iiG~vT~l~VLvtii~afv---f~~~~----p~p~~iffavcI~l~~~s~~lLI~W 81 (118)
T PF10856_consen 33 IIGAVTSLFVLVTIISAFV---FPQDP----PKPLHIFFAVCILLICISAILLIFW 81 (118)
T ss_pred ehHHHHHHHHHHHHhheEE---ecCCC----CCceEEehHHHHHHHHHHHHhheee
Confidence 4566677777778888875 44343 1222456555555666666555555
No 31
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=48.58 E-value=15 Score=40.78 Aligned_cols=65 Identities=15% Similarity=0.163 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035978 331 QAEQINRKLYYLSFLSIALLPLSIITGVFGMNVGGVPWTLQEEPKDGFRNVVFLCVAMLLLVLLCFLCPAAYS 403 (443)
Q Consensus 331 ~s~q~N~iMk~LTiiS~IflP~T~IaGiyGMNf~~mP~~el~~~~yGy~~~l~lm~~i~~~~~~~f~~~~~y~ 403 (443)
+++| ++-+ .+.+.+.-++|++++++.++-.+. . ...|. |+|++..+ +..++++++++|++|.-+.
T Consensus 159 ~p~k-~R~~-~~~~~~~~~i~~~~~~~~ia~~~~-~---~~~WR-w~~~~~~i-~~~i~~vl~~~fY~PP~~~ 223 (599)
T PF06609_consen 159 VPNK-WRGL-GLAIASIPFIITTWISPLIAQLFA-A---HSGWR-WIFYIFII-WSGIALVLIFFFYFPPPRA 223 (599)
T ss_pred cccc-hhhh-HhHHHHHHHHhhhcccHHHHHHhc-c---CCCcc-hHHHHHHH-HHHHHHHHHHHHhCCCchh
Confidence 4555 6654 345566667788888888887773 2 23699 99987755 4445555566676665543
No 32
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=48.55 E-value=1.8e+02 Score=25.50 Aligned_cols=31 Identities=26% Similarity=0.405 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 035978 331 QAEQINRKLYYLSFLSIALLPLSIITGVFGM 361 (443)
Q Consensus 331 ~s~q~N~iMk~LTiiS~IflP~T~IaGiyGM 361 (443)
...+..+.+..|+.++.+.--+-++..+.||
T Consensus 47 ~~~~~~~~~~~l~~i~~~aP~lGLlGTv~Gm 77 (139)
T PF01618_consen 47 EEERLERNLSILRTIASIAPLLGLLGTVIGM 77 (139)
T ss_pred HHHHHHcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666655445555555555
No 33
>COG3462 Predicted membrane protein [Function unknown]
Probab=46.40 E-value=1.3e+02 Score=25.90 Aligned_cols=28 Identities=14% Similarity=0.230 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035978 377 GFRNVVFLCVAMLLLVLLCFLCPAAYSR 404 (443)
Q Consensus 377 Gy~~~l~lm~~i~~~~~~~f~~~~~y~~ 404 (443)
||+-.+.+|-++.++++++++....|..
T Consensus 45 G~yGm~lImpI~~~vvli~lvvfm~~~~ 72 (117)
T COG3462 45 GLYGMWLIMPIFWAVVLIFLVVFMFYIL 72 (117)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677778888888888777777666654
No 34
>PF05425 CopD: Copper resistance protein D; InterPro: IPR008457 Copper sequestering activity displayed by some bacteria is determined by copper-binding protein products of the copper resistance operon (cop). CopD, together with CopC, perform copper uptake into the cytoplasm [].; GO: 0016021 integral to membrane
Probab=45.65 E-value=71 Score=26.56 Aligned_cols=55 Identities=20% Similarity=0.301 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCC-CCCCCchHHHHHHHHHHHHHHHHHH
Q 035978 337 RKLYYLSFLSIALLPLSIITGVFGMNVGGVPWTL-QEEPKDGFRNVVFLCVAMLLLVLLC 395 (443)
Q Consensus 337 ~iMk~LTiiS~IflP~T~IaGiyGMNf~~mP~~e-l~~~~yGy~~~l~lm~~i~~~~~~~ 395 (443)
++.+.++.++...++..++||+|-+-.. +|... ..++ ||-+ +.+.+++.++++.+
T Consensus 2 ~~~~rFs~~a~~av~~l~~TG~~~a~~~-~~~~~l~~t~-yG~~--Ll~K~~L~~~~l~l 57 (105)
T PF05425_consen 2 AVLRRFSWIAWAAVAVLVVTGLVMAWLR-LGFDALFTTP-YGRL--LLVKLALVLLMLAL 57 (105)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchhhccCh-hHHH--HHHHHHHHHHHHHH
Confidence 4578889999999999999999875331 22111 1355 7743 44455444444333
No 35
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=45.16 E-value=38 Score=30.17 Aligned_cols=15 Identities=20% Similarity=0.421 Sum_probs=8.7
Q ss_pred chHHHHHHHHHHHHH
Q 035978 376 DGFRNVVFLCVAMLL 390 (443)
Q Consensus 376 yGy~~~l~lm~~i~~ 390 (443)
+|||+++++++++++
T Consensus 21 ~GWwll~~lll~~~~ 35 (146)
T PF14316_consen 21 PGWWLLLALLLLLLI 35 (146)
T ss_pred HHHHHHHHHHHHHHH
Confidence 688766555444433
No 36
>PF04011 LemA: LemA family; InterPro: IPR007156 The members of this family are related to the LemA protein P71452 from SWISSPROT. The exact molecular function of this protein is uncertain. It is predicted to be a transmembrane protein with an extracellular N terminus [].; PDB: 2ETD_A.
Probab=42.79 E-value=1.6e+02 Score=27.20 Aligned_cols=53 Identities=17% Similarity=0.373 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCC
Q 035978 305 RLRRLKENVGFITNRVTAIQAGLDSWQAEQINRKLYYLSFLSIALLPLSIITGVFGMNVGGVPW 368 (443)
Q Consensus 305 ~~~~l~e~l~~l~e~l~~L~d~~~s~~s~q~N~iMk~LTiiS~IflP~T~IaGiyGMNf~~mP~ 368 (443)
.+.++.+.++...+++......|+..+..= |..+. -.|-.+++|++| |+.+|+
T Consensus 119 ~~~~l~~~l~~~E~~I~~aR~~YN~av~~y-N~~i~--------~FP~~lvA~~~g--f~~~~~ 171 (186)
T PF04011_consen 119 NFQQLMAQLEETENRIAAARRAYNDAVRDY-NTAIR--------QFPTNLVAGIFG--FKPKEY 171 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH--------hccHHHHHHhcC--CCcCCC
Confidence 345555666666677777777776554433 54443 369999999999 444563
No 37
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=42.63 E-value=57 Score=30.28 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 035978 388 MLLLVLLCFLCPAAYSRIAAWQRRR 412 (443)
Q Consensus 388 i~~~~~~~f~~~~~y~~~~~w~~~~ 412 (443)
+.+++++|++..++|-.+...-..|
T Consensus 39 I~F~iL~~ll~k~l~~PI~~~l~~R 63 (181)
T PRK13454 39 VTLVAIYFVLTRVALPRIGAVLAER 63 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555666555444443
No 38
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=42.13 E-value=63 Score=33.51 Aligned_cols=14 Identities=29% Similarity=0.463 Sum_probs=8.7
Q ss_pred HHHHHHHHhhhhhc
Q 035978 405 IAAWQRRRAMRRSW 418 (443)
Q Consensus 405 ~~~w~~~~~~~~~w 418 (443)
...|++.|..+|.-
T Consensus 72 ~~~~~~~rr~~~~~ 85 (398)
T PRK10747 72 TRGWFVGRKRRRAR 85 (398)
T ss_pred hhHHHHHHHHHHHH
Confidence 45777776665544
No 39
>PHA02849 putative transmembrane protein; Provisional
Probab=42.02 E-value=1.2e+02 Score=24.40 Aligned_cols=11 Identities=36% Similarity=0.528 Sum_probs=5.6
Q ss_pred hccc-cchhhhh
Q 035978 417 SWSL-NRKSFLK 427 (443)
Q Consensus 417 ~w~~-~~~~~~~ 427 (443)
+=.+ .||||++
T Consensus 54 iin~TTRRsF~~ 65 (82)
T PHA02849 54 LINLTTRRSFTH 65 (82)
T ss_pred HHhhhhhhhHHH
Confidence 4444 5566653
No 40
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.63 E-value=4.6e+02 Score=28.41 Aligned_cols=50 Identities=10% Similarity=0.052 Sum_probs=34.7
Q ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cHHHHHHHHHHHhcC
Q 035978 215 SNLVVH--IVDTHVDHLQDVVTKLEIELDSVELELDK---GGFALKKQMLEERRF 264 (443)
Q Consensus 215 ~~ll~~--lLd~ivd~y~~~l~~l~~~ld~LE~~v~~---~~~~lrr~L~~lrR~ 264 (443)
.+|... +=+..++.+...+..|.+++.+|..+=.+ .+..+|++..+|.+-
T Consensus 337 ~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~R 391 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHR 391 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 445444 44778899999999999999999843222 356677777766543
No 41
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=38.98 E-value=86 Score=27.03 Aligned_cols=57 Identities=14% Similarity=0.159 Sum_probs=33.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhhhccccchhhhhhccccc
Q 035978 376 DGFRNVVFLCVAMLLLVLLCFLCPAAYSRIA-------AWQRRRAMRRSWSLNRKSFLKRSVGVQ 433 (443)
Q Consensus 376 yGy~~~l~lm~~i~~~~~~~f~~~~~y~~~~-------~w~~~~~~~~~w~~~~~~~~~~~~~~~ 433 (443)
.|+|.+.-.+++++.+ +..|+.+..-.++| -|++.......|.+++++|..|+=+-|
T Consensus 45 ~~~w~~~p~~~lig~~-l~v~~gg~~l~rlKRGrPe~yl~r~l~~~~~~~~l~~~~lI~~sg~W~ 108 (111)
T TIGR03750 45 AGPWALIPTGALLGPI-LVVLIGGKLLARLKRGKPEGYLYRKLEWKLARLGLGRHRLILRSGGWS 108 (111)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCCCeEEEeccee
Confidence 4554444344444333 33555555455555 556665666678888888888875544
No 42
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=38.92 E-value=3.2e+02 Score=25.26 Aligned_cols=30 Identities=20% Similarity=0.236 Sum_probs=16.3
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHhhccccc
Q 035978 332 AEQINRKLY----YLSFLSIALLPLSIITGVFGMNV 363 (443)
Q Consensus 332 s~q~N~iMk----~LTiiS~IflP~T~IaGiyGMNf 363 (443)
..+.++.++ .+++-.++|+=+|+. .||=|+
T Consensus 88 ~~~~~~~~w~gl~~l~~q~~~l~rLTf~--e~sWDv 121 (180)
T PF04678_consen 88 EKRARRLLWGGLALLVVQFGILARLTFW--EYSWDV 121 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccccch
Confidence 344455443 344555566666665 666665
No 43
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=38.60 E-value=97 Score=28.64 Aligned_cols=18 Identities=17% Similarity=0.154 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 035978 339 LYYLSFLSIALLPLSIITG 357 (443)
Q Consensus 339 Mk~LTiiS~IflP~T~IaG 357 (443)
||.++.+.+. +|+..+++
T Consensus 1 ~~~~~~~~~~-~~~~~~~~ 18 (184)
T PRK13455 1 MKLLSALAAL-AASPALAA 18 (184)
T ss_pred CchHHHHHHH-ccchHhhc
Confidence 5666666544 66666666
No 44
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=37.55 E-value=2.4e+02 Score=28.31 Aligned_cols=74 Identities=14% Similarity=0.113 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC-CCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 035978 322 AIQAGLDSWQAEQINRKLYYLSFLSIALLPLSIITGVFGMNVG-GVPWTLQEEPKDGFRNVVFLCVAMLLLVLLCFLCPA 400 (443)
Q Consensus 322 ~L~d~~~s~~s~q~N~iMk~LTiiS~IflP~T~IaGiyGMNf~-~mP~~el~~~~yGy~~~l~lm~~i~~~~~~~f~~~~ 400 (443)
.|.+-|+-..+-+.=+.++.++++..+|.-...++.++...|. .|| . ..|. +++-+....++..+++++
T Consensus 218 ~LS~RYQl~ENl~slr~L~p~~~~~~i~~~~~~~~~~~~~~~~~~~~-----~--~~y~---al~e~~~~~P~Y~ii~~~ 287 (324)
T PF10292_consen 218 TLSERYQLEENLRSLRLLKPFIILSSIFIFFYIFASIFLRLFNPSMS-----K--PNYF---ALAELNHIFPLYSIISPL 287 (324)
T ss_pred CcchHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-----h--hhHH---HHHHHHHHHHHHHHHHHH
Confidence 4556666666667777888889999999999999988888774 333 2 2343 233334455555555555
Q ss_pred HHHHH
Q 035978 401 AYSRI 405 (443)
Q Consensus 401 ~y~~~ 405 (443)
+..+.
T Consensus 288 ~~~~~ 292 (324)
T PF10292_consen 288 ILYRK 292 (324)
T ss_pred HHHHH
Confidence 55443
No 45
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=33.64 E-value=65 Score=27.47 Aligned_cols=25 Identities=32% Similarity=0.574 Sum_probs=17.0
Q ss_pred cccchhhhhhccccccccCCccccC
Q 035978 419 SLNRKSFLKRSVGVQVQGRGGYLRL 443 (443)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (443)
.+|.+.|-+|-+-+..-.+-|||++
T Consensus 92 ~~N~~~~~~~gi~ii~pr~~g~lsv 116 (118)
T PF10256_consen 92 QLNEELFKPRGIKIISPRRSGYLSV 116 (118)
T ss_pred HHHHHhcccCCcEEEchhHceEEEE
Confidence 7788777766665555667777764
No 46
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=33.47 E-value=3.1e+02 Score=24.26 Aligned_cols=75 Identities=12% Similarity=0.005 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 035978 337 RKLYYLSFLSIALLPLSIITGVFGMNVGGVPWTLQEEPKDGFRNVVFLCVAMLLLVLLCFLCPAAYSRIAAWQRRRAMRR 416 (443)
Q Consensus 337 ~iMk~LTiiS~IflP~T~IaGiyGMNf~~mP~~el~~~~yGy~~~l~lm~~i~~~~~~~f~~~~~y~~~~~w~~~~~~~~ 416 (443)
+.|-.-.++|++|+..=++-=.+|=+.+ .++.+ .++ +-|..+++.=++++++.+.+++..+. .+++++...+|
T Consensus 36 ~~Ml~a~~ls~lFlv~Yl~~~~~~g~~~-f~g~~-~ir-~~Y~~iL~~Hi~LA~~~~pL~l~tl~----~a~~~~~~~Hr 108 (133)
T PF04238_consen 36 KLMLTAFVLSALFLVSYLYYHFLGGSTP-FGGPG-WIR-PVYLFILISHIILAIVALPLVLYTLY----RALRGRFTRHR 108 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcc-cCCCc-cHH-HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHcChHHHH
Confidence 5666777788888876665444443333 44332 344 55555555545555554444443222 33444444444
Q ss_pred hc
Q 035978 417 SW 418 (443)
Q Consensus 417 ~w 418 (443)
+|
T Consensus 109 ki 110 (133)
T PF04238_consen 109 KI 110 (133)
T ss_pred HH
Confidence 44
No 47
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex
Probab=33.05 E-value=2.2e+02 Score=32.00 Aligned_cols=11 Identities=27% Similarity=0.872 Sum_probs=9.0
Q ss_pred cccccCCCCCC
Q 035978 359 FGMNVGGVPWT 369 (443)
Q Consensus 359 yGMNf~~mP~~ 369 (443)
.|.|+.++|..
T Consensus 571 lG~Nl~~l~~~ 581 (636)
T PF05817_consen 571 LGANLSNLPFS 581 (636)
T ss_pred cCcchhhCCCC
Confidence 48999999954
No 48
>TIGR03647 Na_symport_sm probable solute:sodium symporter small subunit. Members of this family are highly hydrophobic bacterial proteins of about 90 amino acids in length. Members usually are found immediately upstream (sometimes fused to) a member of the solute:sodium symporter family, and therefore are a putative sodium:solute symporter small subunit. Members tend to be found in aquatic species, especially those from marine or other high salt environments.
Probab=32.57 E-value=2.6e+02 Score=22.41 Aligned_cols=11 Identities=27% Similarity=0.009 Sum_probs=7.1
Q ss_pred CCCchHHHHHHH
Q 035978 373 EPKDGFRNVVFL 384 (443)
Q Consensus 373 ~~~yGy~~~l~l 384 (443)
+| .|||++-=.
T Consensus 40 fP-lgfw~aaQG 50 (77)
T TIGR03647 40 FP-LGFWFAQQG 50 (77)
T ss_pred CC-hHHHHHHhh
Confidence 55 899865433
No 49
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=32.43 E-value=2e+02 Score=24.54 Aligned_cols=54 Identities=11% Similarity=0.025 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhhcccccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035978 345 LSIALLPLSIITGVFGMNVGGVPWTLQEEPKDGFRNVVFLCVAMLLLVLLCFLCPAAYSR 404 (443)
Q Consensus 345 iS~IflP~T~IaGiyGMNf~~mP~~el~~~~yGy~~~l~lm~~i~~~~~~~f~~~~~y~~ 404 (443)
++.|..=..++++..+.|.-..+ ..+|- -||+++.-+++++...+..-+ ++.++
T Consensus 4 ~~Fi~~~~~~~~~Wi~~N~~~~~--~~~fD--pyPFilLnl~lS~~Aa~~ap~--IlmsQ 57 (108)
T PF06210_consen 4 WTFIIIFTVFLAVWILLNILAPP--RPAFD--PYPFILLNLVLSLEAAYQAPL--ILMSQ 57 (108)
T ss_pred HHHHHHHHHHHHHHHHHHhhccc--cCCCC--CccHHHHHHHHHHHHHHHHHH--HHHHh
Confidence 45566667778888888885444 22231 255555555555554443333 24444
No 50
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=32.36 E-value=2.8e+02 Score=22.73 Aligned_cols=54 Identities=13% Similarity=0.131 Sum_probs=30.4
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035978 289 HWFSSDDINALEELTGRLRRLKENVGFITNRVTAIQAGLDSWQAEQINRKLYYLSFLSIALLPLSIIT 356 (443)
Q Consensus 289 ~~l~~e~~~~l~dv~d~~~~l~e~l~~l~e~l~~L~d~~~s~~s~q~N~iMk~LTiiS~IflP~T~Ia 356 (443)
..++++++..+. +....+.+.+..+...+..|.. +.-|.+.+..++|+..++|.
T Consensus 31 ~eLs~e~R~~lE---~E~~~l~~~l~~~E~eL~~Lrk-----------ENrK~~~ls~~l~~v~~LvY 84 (85)
T PF15188_consen 31 RELSPEARRSLE---KELNELKEKLENNEKELKLLRK-----------ENRKSMLLSVALFFVCFLVY 84 (85)
T ss_pred cCCChHHHHHHH---HHHHHHHHHhhccHHHHHHHHH-----------hhhhhHHHHHHHHHHHHHHc
Confidence 345666665444 4445555555566666666553 22245555666777776664
No 51
>PF13140 DUF3980: Domain of unknown function (DUF3980)
Probab=32.29 E-value=1.2e+02 Score=24.26 Aligned_cols=30 Identities=20% Similarity=0.236 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccCCCC
Q 035978 338 KLYYLSFLSIALLPLSIITGVFGMNVGGVP 367 (443)
Q Consensus 338 iMk~LTiiS~IflP~T~IaGiyGMNf~~mP 367 (443)
.+|+|-+.|+|.+..++++.++--.+-+=|
T Consensus 10 sikilkimsviyli~sil~afs~~sli~~~ 39 (87)
T PF13140_consen 10 SIKILKIMSVIYLIVSILMAFSAGSLIHNP 39 (87)
T ss_pred eeeHHHHHHHHHHHHHHHHHHhccccccCC
Confidence 357888889999999999888765554333
No 52
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=31.65 E-value=2.1e+02 Score=24.98 Aligned_cols=41 Identities=17% Similarity=0.166 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHhhhhhcc-ccchhhhhhccccc
Q 035978 393 LLCFLCPAAYSRIA-------AWQRRRAMRRSWS-LNRKSFLKRSVGVQ 433 (443)
Q Consensus 393 ~~~f~~~~~y~~~~-------~w~~~~~~~~~w~-~~~~~~~~~~~~~~ 433 (443)
+..|+.+.+-.++| .|++..-....|+ ++.++|+.++-.-+
T Consensus 64 ~~v~~gg~~l~rlKRGKP~~yl~r~l~~~l~~~g~l~~~~lI~~sg~W~ 112 (121)
T PF11990_consen 64 LGVFVGGKLLARLKRGKPEGYLYRRLQWRLARRGPLGGSRLITRSGAWS 112 (121)
T ss_pred HHHHHhHHHHHHHHcCCchhHHHHHHHHHHHHhcccCCCCcEEeeCcEe
Confidence 34455555555554 4555555555665 88888877665443
No 53
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=31.55 E-value=2.5e+02 Score=26.44 Aligned_cols=8 Identities=13% Similarity=0.409 Sum_probs=3.9
Q ss_pred chHHHHHH
Q 035978 376 DGFRNVVF 383 (443)
Q Consensus 376 yGy~~~l~ 383 (443)
+|+...++
T Consensus 111 ~gi~tli~ 118 (206)
T PF06570_consen 111 YGIITLIL 118 (206)
T ss_pred ccHHHHHH
Confidence 56644333
No 54
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=31.13 E-value=99 Score=28.47 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccc
Q 035978 339 LYYLSFLSIALLPLSIITGVFGMNV 363 (443)
Q Consensus 339 Mk~LTiiS~IflP~T~IaGiyGMNf 363 (443)
.++.+++++|...+-+++|+-|-=+
T Consensus 4 ~~i~~i~~iilgilli~~gI~~Lv~ 28 (191)
T PF04156_consen 4 QRIISIILIILGILLIASGIAALVL 28 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666677777777544
No 55
>PHA02657 hypothetical protein; Provisional
Probab=30.62 E-value=1.4e+02 Score=24.53 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=12.6
Q ss_pred HHHHHHhhhhhc-cccchhhhh
Q 035978 407 AWQRRRAMRRSW-SLNRKSFLK 427 (443)
Q Consensus 407 ~w~~~~~~~~~w-~~~~~~~~~ 427 (443)
.|.+-+..-=+| ++.||+|++
T Consensus 56 a~n~iKtk~Lkit~~TRRsF~q 77 (95)
T PHA02657 56 ACNRFKTQVLKILSLSKTHFTR 77 (95)
T ss_pred HHHHHHHHHHHHHHHhHHHHHh
Confidence 555555433355 678888874
No 56
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=27.49 E-value=5.6e+02 Score=24.58 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 035978 220 HIVDTHVDHLQDVVTKLEIELDSVELELDK 249 (443)
Q Consensus 220 ~lLd~ivd~y~~~l~~l~~~ld~LE~~v~~ 249 (443)
.-++.++. +..+++|...++++|..+-.
T Consensus 23 ~~lNd~TG--Ys~Ie~LK~~i~~~E~~l~~ 50 (207)
T PF05546_consen 23 QALNDVTG--YSEIEKLKKSIEELEDELEA 50 (207)
T ss_pred HHHHhccC--hHHHHHHHHHHHHHHHHHHH
Confidence 34444444 56688888889988888765
No 57
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=27.35 E-value=1.2e+02 Score=22.47 Aligned_cols=33 Identities=12% Similarity=0.070 Sum_probs=17.1
Q ss_pred ccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 035978 362 NVGGVPWTLQEEPKDGFRNVVFLCVAMLLLVLLCFL 397 (443)
Q Consensus 362 Nf~~mP~~el~~~~yGy~~~l~lm~~i~~~~~~~f~ 397 (443)
+++++- |+++| --=|+.+++.+.++..++.+++
T Consensus 9 ~~DGI~--E~dnp-lP~ww~~~f~~tivfa~~Y~~~ 41 (51)
T PF14715_consen 9 EWDGIR--ELDNP-LPRWWLWLFYGTIVFAVGYLVL 41 (51)
T ss_pred ccCChh--hhcCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 456666 77776 4444444444444444444443
No 58
>KOG2861 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.82 E-value=4.4e+02 Score=27.87 Aligned_cols=67 Identities=21% Similarity=0.315 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 035978 297 NALEELTGRLRRLK---ENVGFITNRVTAIQAGLDSWQAEQINRKLYYLSFLSIALLPLSIITGVFGMNV 363 (443)
Q Consensus 297 ~~l~dv~d~~~~l~---e~l~~l~e~l~~L~d~~~s~~s~q~N~iMk~LTiiS~IflP~T~IaGiyGMNf 363 (443)
+.+..+++.+.+.. ..+..+.++++...+.......+=.|+.|-.|+++=+|++-.-++.++|+|=+
T Consensus 323 p~Le~iY~~~r~yleI~qRv~vLN~kl~~i~~~~~~l~e~ln~r~~~~LEWiIIiLI~~eV~i~i~~i~~ 392 (399)
T KOG2861|consen 323 PQLEPIYEATRRYLEIGQRVNVLNYKLKVIEDLLDILQENLNERHSERLEWIIIILIAFEVAIEIYQIVV 392 (399)
T ss_pred hhHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccceehhhHHHHHHHHHHHHHHHHH
Confidence 34555555555543 46677777777777776666565567788889999888888888888887744
No 59
>PF01578 Cytochrom_C_asm: Cytochrome C assembly protein; InterPro: IPR002541 This entry consists of various proteins involved in cytochrome c assembly from mitochondria and bacteria; CycK from Rhizobium leguminosarum [], CcmC from Escherichia coli and Paracoccus denitrificans [, ] and orf240 from Triticum aestivum (Wheat) mitochondria []. The members of this family are probably integral membrane proteins with six predicted transmembrane helices that may comprise the membrane component of an ABC (ATP binding cassette) transporter complex. This transporter may be necessary for transport of some component needed for cytochrome c assembly. One member, R. leguminosarum CycK, contains a putative haem-binding motif []. Wheat orf240 also contains a putative haem-binding motif and is a proposed ABC transporter with c-type haem as its proposed substrate []. However it seems unlikely that all members of this family transport haem or c-type apocytochromes because P. denitrificans CcmC transports neither [].; GO: 0006461 protein complex assembly, 0008535 respiratory chain complex IV assembly, 0016020 membrane
Probab=26.63 E-value=2.4e+02 Score=26.38 Aligned_cols=29 Identities=31% Similarity=0.628 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-hcc
Q 035978 332 AEQINRKLYYLSFLSIALLPLSIITG-VFG 360 (443)
Q Consensus 332 s~q~N~iMk~LTiiS~IflP~T~IaG-iyG 360 (443)
.+++.+.++.+..++.+++-.++++| +|+
T Consensus 118 l~~le~~~~~~~~~gf~~lti~l~~G~~wa 147 (214)
T PF01578_consen 118 LETLERLSYRLILIGFILLTIGLITGAIWA 147 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence 45667889999999999999999998 455
No 60
>COG3402 Uncharacterized conserved protein [Function unknown]
Probab=26.37 E-value=1.7e+02 Score=26.75 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhhcccccCCCC
Q 035978 345 LSIALLPLSIITGVFGMNVGGVP 367 (443)
Q Consensus 345 iS~IflP~T~IaGiyGMNf~~mP 367 (443)
.+++++...+.+|+.+-=|..-|
T Consensus 24 ~~~l~Ll~av~~~~~~~~~~~~~ 46 (161)
T COG3402 24 PIALVLLIAVAAGVLLYFVGLDP 46 (161)
T ss_pred HHHHHHHHHHHHHHHHheeccCC
Confidence 35667777888888887664333
No 61
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=26.35 E-value=1.2e+02 Score=31.08 Aligned_cols=68 Identities=15% Similarity=0.144 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035978 328 DSWQAEQINRKLYYLSFLSIALLPLSIITGVFGMNVGGVPWTLQEEPKDGFRNVVFLCVAMLLLVLLCFLCPAAYS 403 (443)
Q Consensus 328 ~s~~s~q~N~iMk~LTiiS~IflP~T~IaGiyGMNf~~mP~~el~~~~yGy~~~l~lm~~i~~~~~~~f~~~~~y~ 403 (443)
+...+.++-.+.+.+..--...+|.+++-..-|..+.+.+ ++ +.+... +...+..+...+|++..+|.
T Consensus 36 g~~~~D~~~~T~~al~~tll~alp~pl~~~~~g~~L~~~~-----~~-~~~~~~--l~~~l~~~a~~~~~~~~~~~ 103 (340)
T PF12794_consen 36 GKVRQDSFSHTPRALLLTLLLALPLPLLLLAIGYLLQFAA-----WS-SPFSVA--LGAALLAMALFWLVFEFFRR 103 (340)
T ss_pred CCccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cc-CchHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 3333444455666655555556666666666666554333 22 233333 33333333344555555565
No 62
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=25.91 E-value=3e+02 Score=29.33 Aligned_cols=25 Identities=16% Similarity=0.195 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhhcc
Q 035978 336 NRKLYYLSFLSIALLPLSI-ITGVFG 360 (443)
Q Consensus 336 N~iMk~LTiiS~IflP~T~-IaGiyG 360 (443)
+..|+.+..+-++++|+.+ +.|++|
T Consensus 220 ~~~~~k~m~~m~~~~Pim~~~~g~~~ 245 (429)
T PRK00247 220 AVGMLKFLIVMAILAPIFPLSLGLTG 245 (429)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhc
Confidence 3456666777778888544 567777
No 63
>COG2322 Predicted membrane protein [Function unknown]
Probab=25.40 E-value=4.4e+02 Score=24.46 Aligned_cols=76 Identities=14% Similarity=0.108 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 035978 337 RKLYYLSFLSIALLPLSIITGVFGMNVGGVPWTLQEEPKDGFRNVVFLCVAMLLLVLLCFLCPAAYSRIAAWQRRRAMRR 416 (443)
Q Consensus 337 ~iMk~LTiiS~IflP~T~IaGiyGMNf~~mP~~el~~~~yGy~~~l~lm~~i~~~~~~~f~~~~~y~~~~~w~~~~~~~~ 416 (443)
+.|-.-+..+.+|+.+=+.--..|=|-. .++.+ .-. ..|+.++..=++++++.+-+- +|.-..+|++....+|
T Consensus 77 ~aMltA~~l~l~FlvlYltr~~l~~~t~-f~~~G-~~k-~~Y~~iL~~Hi~LA~i~vPLa----l~al~~a~~~~~~rHr 149 (177)
T COG2322 77 RAMLTAFTLALVFLVLYLTRHGLGGETA-FGGTG-IYK-GIYFFILITHIILAAINVPLA----LYALILAWKGLYERHR 149 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccc-CCCCe-eee-hHHHHHHHHHHHHHHHhhhHH----HHHHHHHhcchhhhhh
Confidence 5566666777788877777666666652 34333 233 456555555444444432222 3455689999999998
Q ss_pred hcc
Q 035978 417 SWS 419 (443)
Q Consensus 417 ~w~ 419 (443)
+|+
T Consensus 150 ki~ 152 (177)
T COG2322 150 KIG 152 (177)
T ss_pred eee
Confidence 883
No 64
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=25.29 E-value=2.3e+02 Score=23.93 Aligned_cols=27 Identities=7% Similarity=0.145 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccC
Q 035978 338 KLYYLSFLSIALLPLSIITGVFGMNVG 364 (443)
Q Consensus 338 iMk~LTiiS~IflP~T~IaGiyGMNf~ 364 (443)
.+-.++.++.-+..|+++.-+.|.=.+
T Consensus 41 ~l~~~g~IG~~~v~pil~G~~lG~WLD 67 (100)
T TIGR02230 41 GLGMFGLIGWSVAIPTLLGVAVGIWLD 67 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567778888999999999998554
No 65
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=25.25 E-value=4.4e+02 Score=27.76 Aligned_cols=20 Identities=5% Similarity=0.102 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhhcccccCCCC
Q 035978 347 IALLPLSIITGVFGMNVGGVP 367 (443)
Q Consensus 347 ~IflP~T~IaGiyGMNf~~mP 367 (443)
.+|..|.|..-+=|||-+ +|
T Consensus 181 l~~VvP~f~~if~~~~~~-LP 200 (397)
T COG1459 181 LIFVVPQFAEIFESLGAE-LP 200 (397)
T ss_pred HHHHhccHHHHHhhcCCC-Cc
Confidence 346677777777778886 88
No 66
>PF05461 ApoL: Apolipoprotein L; InterPro: IPR008405 Apo L belongs to the high density lipoprotein family that plays a central role in cholesterol transport. The cholesterol content of membranes is important in cellular processes such as modulating gene transcription and signal transduction both in the adult brain and during neurodevelopment. There are six apo L genes located in close proximity to each other on chromosome 22q12 in humans. 22q12 is a confirmed high-susceptibility locus for schizophrenia and close to the region associated with velocardiofacial syndrome that includes symptoms of schizophrenia []. The various functions of apoL are still not entirely clear. Apolipoprotein L-I has been identified as a trypanolytic agent [] and displays similar phylogenetic distribution to the programmed cell death protein Bcl-2 and BH-3 domain-containing proteins, suggesting a possible role in apoptosis [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region
Probab=25.07 E-value=2.3e+02 Score=28.78 Aligned_cols=31 Identities=19% Similarity=0.176 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035978 327 LDSWQAEQINRKLYYLSFLSIALLPLSIITG 357 (443)
Q Consensus 327 ~~s~~s~q~N~iMk~LTiiS~IflP~T~IaG 357 (443)
..++.+.-..-+--+|||+...+.|.|+=+|
T Consensus 97 isnvv~ss~g~vsGilsIlGLaLAPvT~G~S 127 (313)
T PF05461_consen 97 ISNVVGSSTGAVSGILSILGLALAPVTAGGS 127 (313)
T ss_pred HHHHHhhhHHHHhhHHHHHhHHhccccccch
Confidence 3455555666666778888888888875433
No 67
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=24.98 E-value=3.4e+02 Score=24.77 Aligned_cols=17 Identities=12% Similarity=0.555 Sum_probs=8.3
Q ss_pred HHHHHHHHHHhhccccc
Q 035978 347 IALLPLSIITGVFGMNV 363 (443)
Q Consensus 347 ~IflP~T~IaGiyGMNf 363 (443)
..+.|.-.+.-++|.|.
T Consensus 111 ly~vP~r~l~l~~gly~ 127 (156)
T PF08372_consen 111 LYFVPFRVLVLIWGLYK 127 (156)
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 33555555544444443
No 68
>PF08654 DASH_Dad2: DASH complex subunit Dad2; InterPro: IPR013963 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=24.93 E-value=4.3e+02 Score=22.38 Aligned_cols=50 Identities=16% Similarity=0.221 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 035978 297 NALEELTGRLRRLKENVGFITNRVTAIQ---AGLDSWQAEQINRKLYYLSFLSI 347 (443)
Q Consensus 297 ~~l~dv~d~~~~l~e~l~~l~e~l~~L~---d~~~s~~s~q~N~iMk~LTiiS~ 347 (443)
..++.+.+-...+...++.+.+.++.+. +++..+++|= +.+++.++..|+
T Consensus 14 e~L~~l~~lS~~L~~qle~L~~kl~~m~dg~e~Va~Vl~NW-~nV~r~Is~AS~ 66 (103)
T PF08654_consen 14 EALKQLRDLSADLASQLEALSEKLETMADGAEAVASVLANW-QNVFRAISMASL 66 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhH-HHHHHHHHHHHh
Confidence 3444445545555555666666666665 5555666666 567777776654
No 69
>PF03268 DUF267: Caenorhabditis protein of unknown function, DUF267; InterPro: IPR004950 This family of proteins, from Caenorhabditis species, have not been characterised though a number are annotated as 'serpentine receptor, class r' proteins.
Probab=24.88 E-value=8e+02 Score=25.50 Aligned_cols=67 Identities=13% Similarity=0.167 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-cCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035978 331 QAEQINRKLYYLSFLSIALLPLSIITGVFGMN-VGGVPWTLQEEPKDGFRNVVFLCVAMLLLVLLCFLCPAAYSR 404 (443)
Q Consensus 331 ~s~q~N~iMk~LTiiS~IflP~T~IaGiyGMN-f~~mP~~el~~~~yGy~~~l~lm~~i~~~~~~~f~~~~~y~~ 404 (443)
..+..|+.|..++.++-+|+-..+|-|+|=.- |.. .-| -.|.+++....+.++.+-.+-+.|....+
T Consensus 220 lv~~~ne~L~~f~~~aPlf~f~a~iN~~Yi~s~F~~------~~p-~~y~i~li~~l~a~i~~t~~~L~P~a~VQ 287 (353)
T PF03268_consen 220 LVNFANESLSSFMTFAPLFCFYALINAVYIVSSFFS------SVP-LLYFICLIFNLIAIIFITFFLLYPAANVQ 287 (353)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhcc------CCc-hHHHHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 45677999999999999999999999999774 632 123 45766666666666665555555655554
No 70
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=24.57 E-value=4e+02 Score=21.90 Aligned_cols=15 Identities=27% Similarity=0.394 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHhhh
Q 035978 401 AYSRIAAWQRRRAMR 415 (443)
Q Consensus 401 ~y~~~~~w~~~~~~~ 415 (443)
++.....|.+-|++.
T Consensus 71 ~~~~~~~W~~~r~ta 85 (112)
T PF14015_consen 71 FFRFHERWIRYRATA 85 (112)
T ss_pred HhchhHHHHHHHHHH
Confidence 344455777777665
No 71
>PF10027 DUF2269: Predicted integral membrane protein (DUF2269); InterPro: IPR018729 Members of this family of bacterial hypothetical integral membrane proteins have no known function.
Probab=24.27 E-value=3.7e+02 Score=23.67 Aligned_cols=24 Identities=21% Similarity=0.115 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHhhcccccCCCCC
Q 035978 345 LSIALLPLSIITGVFGMNVGGVPW 368 (443)
Q Consensus 345 iS~IflP~T~IaGiyGMNf~~mP~ 368 (443)
+++...-...+||++=+...+.|+
T Consensus 51 ~~~~~~~~~~vtG~~l~~~~g~~~ 74 (150)
T PF10027_consen 51 FTAPGGILLPVTGLWLAWLLGWPL 74 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCc
Confidence 344444556677877777755553
No 72
>PF09972 DUF2207: Predicted membrane protein (DUF2207); InterPro: IPR018702 This domain has no known function.
Probab=23.92 E-value=2.3e+02 Score=29.77 Aligned_cols=23 Identities=30% Similarity=0.182 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHhhcccccC
Q 035978 342 LSFLSIALLPLSIITGVFGMNVG 364 (443)
Q Consensus 342 LTiiS~IflP~T~IaGiyGMNf~ 364 (443)
+.+++++++.+.++..++.+.+.
T Consensus 400 ~~~~~~i~~i~~~~~~~~~~~~~ 422 (511)
T PF09972_consen 400 LIILGIILLILGFILLIVLFIAF 422 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666665555443
No 73
>PHA03240 envelope glycoprotein M; Provisional
Probab=23.56 E-value=1.1e+02 Score=29.36 Aligned_cols=21 Identities=10% Similarity=0.225 Sum_probs=8.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHH
Q 035978 376 DGFRNVVFLCVAMLLLVLLCFL 397 (443)
Q Consensus 376 yGy~~~l~lm~~i~~~~~~~f~ 397 (443)
+..|+++++. ++++++++||.
T Consensus 212 H~~WIiilII-iIiIIIL~cfK 232 (258)
T PHA03240 212 HIAWIFIAII-IIIVIILFFFK 232 (258)
T ss_pred hHhHHHHHHH-HHHHHHHHHHh
Confidence 4444433333 33333344443
No 74
>TIGR01598 holin_phiLC3 holin, phage phi LC3 family. Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families.
Probab=23.50 E-value=61 Score=26.16 Aligned_cols=31 Identities=19% Similarity=0.234 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccCCCC
Q 035978 337 RKLYYLSFLSIALLPLSIITGVFGMNVGGVP 367 (443)
Q Consensus 337 ~iMk~LTiiS~IflP~T~IaGiyGMNf~~mP 367 (443)
+-...+++++++|++..-+++.||+.+..++
T Consensus 9 Nk~fw~ali~al~l~~q~v~~~fG~~~~~~~ 39 (78)
T TIGR01598 9 NKATLIALLGALFLAIQSILDNFGVLWLSFN 39 (78)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 3446789999999999999999999776443
No 75
>CHL00045 ccsA cytochrome c biogenesis protein
Probab=23.49 E-value=1.3e+02 Score=30.52 Aligned_cols=32 Identities=22% Similarity=0.364 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 035978 332 AEQINRKLYYLSFLSIALLPLSIITGVFGMNV 363 (443)
Q Consensus 332 s~q~N~iMk~LTiiS~IflP~T~IaGiyGMNf 363 (443)
-+++.+.++++..++.+|+-+++++|..=.|.
T Consensus 216 L~~Ld~l~yr~~~~Gf~lltlgli~G~iwa~~ 247 (319)
T CHL00045 216 IQQLDNWSYRIISLGFPFLTIGILSGAVWANE 247 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999877665
No 76
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=23.34 E-value=2.2e+02 Score=26.02 Aligned_cols=28 Identities=11% Similarity=0.103 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035978 385 CVAMLLLVLLCFLCPAAYSRIAAWQRRR 412 (443)
Q Consensus 385 m~~i~~~~~~~f~~~~~y~~~~~w~~~~ 412 (443)
..++.++++++++...+|-++...-..|
T Consensus 15 w~iI~FlILy~ll~kf~~ppI~~iLe~R 42 (155)
T PRK06569 15 WLIVTFGLLYIFVYKFITPKAEEIFNNR 42 (155)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3334444444555445555554444333
No 77
>PRK09577 multidrug efflux protein; Reviewed
Probab=22.51 E-value=3.9e+02 Score=31.68 Aligned_cols=51 Identities=22% Similarity=0.293 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCCCchHHHHHHHHHHHHHH
Q 035978 331 QAEQINRKLYYLSFLSIALLPLSIITGVFGMNVGGVPWTLQEEPKDGFRNVVFLCVAMLLL 391 (443)
Q Consensus 331 ~s~q~N~iMk~LTiiS~IflP~T~IaGiyGMNf~~mP~~el~~~~yGy~~~l~lm~~i~~~ 391 (443)
+.-+-|....-|.++++| |++++.+++|+-+-++| .++...++++++++++
T Consensus 882 l~~~F~S~~~plii~~~i--Pl~l~G~~~~l~l~g~~--------l~~~s~~G~i~L~Giv 932 (1032)
T PRK09577 882 LAALYESWSIPFAVMLVV--PLGVIGAVLGVTLRGMP--------NDIYFKVGLIATIGLS 932 (1032)
T ss_pred HHHHHHhHHhHHHHHHHh--hHHHHHHHHHHHHhCCC--------ccHHHHHHHHHHHHHH
Confidence 456667766677777655 99999999999877666 4455555555555443
No 78
>COG1333 ResB ResB protein required for cytochrome c biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=22.14 E-value=1.5e+02 Score=31.87 Aligned_cols=64 Identities=20% Similarity=0.151 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhhcccccCC-C---CCC-----------------CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035978 346 SIALLPLSIITGVFGMNVGG-V---PWT-----------------LQEEPKDGFRNVVFLCVAMLLLVLLCFLCPAAYSR 404 (443)
Q Consensus 346 S~IflP~T~IaGiyGMNf~~-m---P~~-----------------el~~~~yGy~~~l~lm~~i~~~~~~~f~~~~~y~~ 404 (443)
++.++-++.|+++.|-=+.- + |.. .++.- |+=||++++++++++-+.+|-+ |-+...
T Consensus 4 AI~LL~llaiaSi~GTvl~Q~~~N~~~~~y~~~fg~~~gq~~~~Lgl~~V-y~SwWfl~iivlL~VSLv~C~l-pr~~~~ 81 (478)
T COG1333 4 AIALLLLLAIASIPGTVLPQRGLNQPYPDYYAEFGGLWGQWIDQLGLFDV-YSSWWFLAIIVLLGVSLVGCSL-PRFPAL 81 (478)
T ss_pred HHHHHHHHHHHhcccceeeccccCCCCcchHHHhCchHHHHHHHhccchH-HHHHHHHHHHHHHHHHHHhhcc-cccHHH
Confidence 45667788889998864421 0 100 11122 5667888888888887777775 666665
Q ss_pred HHHHHHH
Q 035978 405 IAAWQRR 411 (443)
Q Consensus 405 ~~~w~~~ 411 (443)
+++|+..
T Consensus 82 ~ra~r~~ 88 (478)
T COG1333 82 YRALRAK 88 (478)
T ss_pred HHHhhcc
Confidence 6655544
No 79
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=22.03 E-value=2.7e+02 Score=25.64 Aligned_cols=8 Identities=50% Similarity=1.049 Sum_probs=4.5
Q ss_pred Hhhccccc
Q 035978 356 TGVFGMNV 363 (443)
Q Consensus 356 aGiyGMNf 363 (443)
+|.||.|.
T Consensus 17 ~~~f~~n~ 24 (184)
T CHL00019 17 AGSFGFNT 24 (184)
T ss_pred cCccCCcc
Confidence 45566654
No 80
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=21.85 E-value=4.4e+02 Score=21.45 Aligned_cols=55 Identities=13% Similarity=0.051 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhc----ccccCCCCCCCCCCCCchHHHHHHHHHHHH
Q 035978 328 DSWQAEQINRKLYYLSFLS-IALLPLSIITGVF----GMNVGGVPWTLQEEPKDGFRNVVFLCVAML 389 (443)
Q Consensus 328 ~s~~s~q~N~iMk~LTiiS-~IflP~T~IaGiy----GMNf~~mP~~el~~~~yGy~~~l~lm~~i~ 389 (443)
......| ++....++++. +.+.-..+++++. |.-+ .|+ .-+ +|+++.+++.++..
T Consensus 8 ~~L~r~r-~r~~~~l~~i~l~~y~~~~ll~a~~p~~m~~~v--~~G---~~t-~g~~~g~~~~~~~~ 67 (91)
T PF04341_consen 8 QELVRRR-RRLAWPLSAIFLVLYFGFVLLSAFAPELMATPV--FPG---SLT-LGIVLGLGQIVFAW 67 (91)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCHHHHcCcc--cCC---CcC-HHHHHHHHHHHHHH
Confidence 3334444 55444444443 3344444444433 3333 222 234 78876655554433
No 81
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=21.74 E-value=1.1e+02 Score=26.86 Aligned_cols=19 Identities=11% Similarity=0.120 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 035978 378 FRNVVFLCVAMLLLVLLCF 396 (443)
Q Consensus 378 y~~~l~lm~~i~~~~~~~f 396 (443)
..+++++|+++++++++++
T Consensus 67 ~~Ii~gv~aGvIg~Illi~ 85 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLIS 85 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHHHHH
Confidence 4566677776666544433
No 82
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=21.41 E-value=38 Score=39.88 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHhhcccccCCCC
Q 035978 341 YLSFLSIALLPLSIITGVFGMNVGGVP 367 (443)
Q Consensus 341 ~LTiiS~IflP~T~IaGiyGMNf~~mP 367 (443)
+||.+ ++|+|+.|+.|+-|=-|..||
T Consensus 439 tlTti-~vF~Pl~f~~G~~g~~~~~l~ 464 (1021)
T PF00873_consen 439 TLTTI-AVFLPLLFMPGIAGQFFRPLA 464 (1021)
T ss_dssp HHHHH-HHTCGGGGSBHHHHHHHHHHH
T ss_pred HHHHH-HHhhhhhhcCCchHHHHHHHH
Confidence 44443 579999999999998775444
No 83
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=21.23 E-value=9.5e+02 Score=26.59 Aligned_cols=49 Identities=14% Similarity=0.178 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035978 301 ELTGRLRRLKENVGFITNRVTAIQAGLDSWQAEQINRKLYYLSFLSIAL 349 (443)
Q Consensus 301 dv~d~~~~l~e~l~~l~e~l~~L~d~~~s~~s~q~N~iMk~LTiiS~If 349 (443)
.+..++..+-+.+....+.++.....+...+....++.|+-|.+=-+-|
T Consensus 346 ~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L~~~v~~eL~~L~Me~a~F 394 (557)
T COG0497 346 ALEKEVKKLKAELLEAAEALSAIRKKAAKELEKEVTAELKALAMEKARF 394 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceE
Confidence 3334444444444444444555555555566777777777776544444
No 84
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.98 E-value=3.2e+02 Score=20.46 Aligned_cols=10 Identities=10% Similarity=0.285 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 035978 382 VFLCVAMLLL 391 (443)
Q Consensus 382 l~lm~~i~~~ 391 (443)
++++++++++
T Consensus 24 il~~f~~G~l 33 (68)
T PF06305_consen 24 ILIAFLLGAL 33 (68)
T ss_pred HHHHHHHHHH
Confidence 3344444444
No 85
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=20.81 E-value=5.1e+02 Score=21.75 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHhhccccc
Q 035978 342 LSFLSIALLPLSIITGVFGMNV 363 (443)
Q Consensus 342 LTiiS~IflP~T~IaGiyGMNf 363 (443)
+.+++++|+-..++...++..+
T Consensus 40 ~~~~a~vl~~~~l~~l~~al~~ 61 (121)
T PF07332_consen 40 LLVLAAVLALLALLFLLVALVF 61 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555544
No 86
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=20.81 E-value=4e+02 Score=22.76 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCCCchHH
Q 035978 340 YYLSFLSIALLPLSIITGVFGMNVGGVPWTLQEEPKDGFR 379 (443)
Q Consensus 340 k~LTiiS~IflP~T~IaGiyGMNf~~mP~~el~~~~yGy~ 379 (443)
..+-+++.++...-++..++--|-.+.| ..++. +++.
T Consensus 39 ~~lq~l~~~~~~~G~~~~~~~~~~~~~~--h~~s~-H~~l 75 (137)
T PF03188_consen 39 WILQVLALVFAIIGFVAIFINKNRNGKP--HFKSW-HSIL 75 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCC--CCCCc-hhhh
Confidence 4566677777778888887766654455 44444 5553
No 87
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=20.30 E-value=78 Score=31.74 Aligned_cols=56 Identities=23% Similarity=0.190 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHhhcccccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035978 343 SFLSIALLPLSIITGVFGMNVGGVPWTLQEEPKDGFRNVVFLCVAMLLLVLLCFLCPAAYSRI 405 (443)
Q Consensus 343 TiiS~IflP~T~IaGiyGMNf~~mP~~el~~~~yGy~~~l~lm~~i~~~~~~~f~~~~~y~~~ 405 (443)
+.-++++.-+|.++|+..+.|..+|.. .. +|...+++++ ++.++.+ .+.|.+..-.
T Consensus 247 ~g~~i~~s~ltt~~gf~~L~~s~~~~~---~~-~G~~~~~gi~--~~~l~~l-~llPall~~~ 302 (333)
T PF03176_consen 247 TGRAILLSALTTAIGFGSLLFSPFPPL---RQ-FGLLAAIGIL--IALLLSL-TLLPALLSLL 302 (333)
T ss_pred cCchhHHHHHHHHHHHHHHHHhhhhHH---HH-HHHHHHHHHH--HHHHHHH-HHHHHHHHHc
Confidence 344556777888999999999878843 22 6665444333 3333333 3447777754
Done!