Query 035978
Match_columns 443
No_of_seqs 217 out of 1624
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 13:44:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035978.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035978hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ev6_A Magnesium transport pro 100.0 1.3E-53 4.3E-58 431.3 31.4 303 39-396 22-333 (339)
2 2iub_A CORA, divalent cation t 100.0 9.8E-53 3.4E-57 428.6 37.9 326 14-396 13-357 (363)
3 4egw_A Magnesium transport pro 100.0 1.3E-34 4.4E-39 284.7 23.0 250 39-340 22-280 (280)
4 3nvo_A Zinc transport protein 100.0 2E-32 7E-37 266.1 27.3 241 37-334 13-264 (264)
5 3ck6_A Putative membrane trans 100.0 9.3E-32 3.2E-36 259.9 25.1 242 38-339 5-252 (252)
6 2bbh_A Divalent cation transpo 99.9 4.1E-26 1.4E-30 222.2 23.2 227 34-314 25-269 (269)
7 2hn1_A CORA, magnesium and cob 99.9 3.4E-25 1.2E-29 215.7 26.3 222 35-310 28-265 (266)
8 2iub_A CORA, divalent cation t 88.9 11 0.00036 37.4 15.8 164 231-409 188-363 (363)
9 4ev6_A Magnesium transport pro 86.0 27 0.00091 34.0 18.6 102 300-408 233-338 (339)
10 1deq_A Fibrinogen (alpha chain 43.7 1.9E+02 0.0064 28.9 11.3 29 218-246 54-82 (390)
11 2akf_A Coronin-1A; coiled coil 38.1 65 0.0022 20.1 4.4 26 223-248 5-30 (32)
12 2oar_A Large-conductance mecha 27.4 92 0.0031 27.7 5.5 58 345-406 58-121 (174)
13 3nvo_A Zinc transport protein 24.1 4E+02 0.014 24.1 9.9 93 231-331 155-254 (264)
14 3ghg_A Fibrinogen alpha chain; 23.3 6.5E+02 0.022 26.2 14.4 94 217-324 50-144 (562)
15 2lx0_A Membrane fusion protein 20.4 1.1E+02 0.0039 18.8 3.2 24 378-401 6-29 (32)
16 2knc_B Integrin beta-3; transm 20.2 2.3E+02 0.008 21.6 6.0 23 397-420 34-58 (79)
No 1
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.3e-53 Score=431.34 Aligned_cols=303 Identities=18% Similarity=0.207 Sum_probs=245.9
Q ss_pred CceeeEEEEEcCCCceeeeccccccCCCCceeEEEecCCChhhhhHHHHHHHHHhc-CChhhHHHhhhccCCCceeEEEC
Q 035978 39 GMVRKKAYIFDGHGKYYIKEWDLTDGIGNEFSWYHVELPKGSQKLAQSAQYLIDVL-CPPLKLQDILSLVSNGPFCGYVD 117 (443)
Q Consensus 39 ~~i~~~a~~~~g~g~~~~~~~~~~~~~~~~~~Wi~l~~p~~~e~~~~~~~~l~~~f-l~pl~~ed~L~~~e~rpr~e~~~ 117 (443)
.||..++|.-||.= .....+.-...+.+++|||+.+|+++| +++|++.| +||++++|+++. ++|||+|.++
T Consensus 22 ~~i~~~~~~~d~~~--~~~~l~~~~~~d~~~vWIdl~~Pt~~E-----~~~l~~~~~l~~~~~ed~l~~-~~rpk~e~~~ 93 (339)
T 4ev6_A 22 SMITVIAIAKDGSI--VEPKLDEISFEDYRLIWIDCYDPKDEE-----LYKLSKKIGISVSDLQIGLDE-QEIPRVEEDE 93 (339)
T ss_dssp ---CCSSEEEEESS--SCCBCCSCCCSSCSCEEEEEESCCHHH-----HHHHHHHHTCCHHHHHHHHCT-TCCCEEEEET
T ss_pred cceEEEEEcCCCCc--ccCchhhhhccCCCEEEEEeCCCCHHH-----HHHHHHHHCcCHhHHHHhhCC-ccCCeEEEEC
Confidence 37877777766432 222333112245679999999999987 58999999 999999999998 5699999999
Q ss_pred CEEEEEEeCCCCCCCceEEEEEEEEeCCEEEEEEeCCCCCCCCCcCcccccccCcccccCCCCCCCCCchhHHHHHHHHH
Q 035978 118 GALVFRVNSPGPASSNFTFRIAARITDNSVITVSLGRVPRLGFSPMGQSLLSEIPSVENHRGEPKEGSGIVIREHVLEFL 197 (443)
Q Consensus 118 ~~l~~~v~~~~~~~~~~~~~l~~~l~~~~LITv~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l 197 (443)
+++|++++.+..+++..+.+++|++++++|||||+++.+.+ +.+.+++
T Consensus 94 ~~~~iv~~~~~~~~~~~~~~v~i~l~~~~lITv~~~~~~~~--------------------------------~~~~~~~ 141 (339)
T 4ev6_A 94 DFYLIIYKAPLFEEDITTTSLGIYIKNNLLLTIHSDKIKAI--------------------------------GRLHKLI 141 (339)
T ss_dssp TEEEEECCCCCCTTTCCCCCCEEEEETTEEEEEESSCCHHH--------------------------------HHHHHHS
T ss_pred CEEEEEEecCccCCCcceEEEEEEEECCeeEEeecCCcchh--------------------------------HHHHHHH
Confidence 99988766543332222568999999999999999876432 2233333
Q ss_pred HhhcCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------HHHHHHHHHHHhcCcchhh
Q 035978 198 LTMNHSEEADNPVPKSLSNLVVHIVDTHVDHLQDVVTKLEIELDSVELELDKG--------GFALKKQMLEERRFPKMHL 269 (443)
Q Consensus 198 ~~l~~~~~~~~~~~~~~~~ll~~lLd~ivd~y~~~l~~l~~~ld~LE~~v~~~--------~~~lrr~L~~lrR~~~ll~ 269 (443)
..... ......++.++++.++|.++|.|+++++.++++++++|++++.+ +..+|+++..+||+ +
T Consensus 142 ---~~~~~-~~~~~~~~~~ll~~lld~ivd~~~~~l~~l~~~i~~lE~~l~~~~~~~~l~~l~~lrr~l~~lrr~----l 213 (339)
T 4ev6_A 142 ---STKKP-RIVFERGIGFLLYHILNEITRSYSRILMNLEDELEELEDKLLAGYDREVMEKILGLRKTLVYFHKS----L 213 (339)
T ss_dssp ---SSSSS-CCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHH----H
T ss_pred ---HcCCC-ccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH----h
Confidence 11111 11235689999999999999999999999999999999999864 46788999999998 6
Q ss_pred hhHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035978 270 NLQRLLQYFRESKERCSSKHWFSSDDINALEELTGRLRRLKENVGFITNRVTAIQAGLDSWQAEQINRKLYYLSFLSIAL 349 (443)
Q Consensus 270 ~~~rll~~l~~L~~~~~~~~~l~~e~~~~l~dv~d~~~~l~e~l~~l~e~l~~L~d~~~s~~s~q~N~iMk~LTiiS~If 349 (443)
.++| +++..+.+ ....+++++++.+++|+.+|+.++.++++.++++++.+.+++.+.+++++|++||+||++|+||
T Consensus 214 ~~~~--~vl~~L~~--~~~~~~~~~~~~~l~dv~~~~~~l~e~~~~~~e~l~~l~d~~~s~is~~~N~~mk~LTiit~If 289 (339)
T 4ev6_A 214 IANR--DVLVLLKR--KYLPITTKEDRENFEDLYYDTLQLIDMSATYREVLTSMMDITLSLENIKMNQIMKILTMVTTIF 289 (339)
T ss_dssp HHHH--HHHHHHHH--SCBTTBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhhH--HHHHHHhh--ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777 77788764 4566778899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 035978 350 LPLSIITGVFGMNVGGVPWTLQEEPKDGFRNVVFLCVAMLLLVLLCF 396 (443)
Q Consensus 350 lP~T~IaGiyGMNf~~mP~~el~~~~yGy~~~l~lm~~i~~~~~~~f 396 (443)
+|||||||+|||||++|| +++|+ ||||+++++|++++++++++|
T Consensus 290 lP~T~IaGiyGMNf~~mP--el~~~-~gy~~~l~~m~~~~~~~~~~f 333 (339)
T 4ev6_A 290 AVPMWITGIYGMNFSYLP--LANNP-QGFWLVMALMVVIIMIFVYIF 333 (339)
T ss_dssp SHHHHHHHHTTCCCSCCT--TSSCT-THHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCcCCCCC--CccCc-hHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 77999 999999999999888766554
No 2
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=100.00 E-value=9.8e-53 Score=428.55 Aligned_cols=326 Identities=15% Similarity=0.191 Sum_probs=238.5
Q ss_pred hhhhhh-cCCCCCCCccCCCCCCCCCCceeeEEEEEcCCCceeeecc-cccc----CCCCceeEEEecCCC-hhhhhHHH
Q 035978 14 IEERER-LNPGEPSFRKSHVYRHHFPGMVRKKAYIFDGHGKYYIKEW-DLTD----GIGNEFSWYHVELPK-GSQKLAQS 86 (443)
Q Consensus 14 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~a~~~~g~g~~~~~~~-~~~~----~~~~~~~Wi~l~~p~-~~e~~~~~ 86 (443)
.|||.+ -.||.||=+-...-....+.|| .++.|++++. ..... +..+ ..+++++|||+.+|+ ++|
T Consensus 13 ~~~~~~~~~~g~~pg~~~~~~~~~~~~~i--~~~~y~~~~~-~~~~~~~~~~~~~~~~~~~~~Wi~l~~p~~~~e----- 84 (363)
T 2iub_A 13 MEEKRLSAKKGLPPGTLVYTGKYREDFEI--EVMNYSIEEF-REFKTTDVESVLPFRDSSTPTWINITGIHRTDV----- 84 (363)
T ss_dssp ----CCSCCCSCCTTCCCCCSSCCSCCEE--EEEEECSSCE-EEEEESCGGGTGGGGGCSSCEEEEEECTTCHHH-----
T ss_pred hhhhhccCCCCCCCcceeccCCCCCCeEE--EEEEEcCCce-eecCCCCHHHHHhhccCCCeEEEEeCCCCCHHH-----
Confidence 344433 2345555443222123445577 5556665443 22111 1111 124579999999996 655
Q ss_pred HHHHHHhc-CChhhHHHhhhccCCCceeEEECCEEEEEEeCC--CCCCCce-EEEEEEEEeCCEEEEEEeCCCCCCCCCc
Q 035978 87 AQYLIDVL-CPPLKLQDILSLVSNGPFCGYVDGALVFRVNSP--GPASSNF-TFRIAARITDNSVITVSLGRVPRLGFSP 162 (443)
Q Consensus 87 ~~~l~~~f-l~pl~~ed~L~~~e~rpr~e~~~~~l~~~v~~~--~~~~~~~-~~~l~~~l~~~~LITv~~~~~~~~~~~~ 162 (443)
+++|++.| +||++++|+++. ++|||+|.|++++|++++.+ .++.+.+ +.+++|++++++|||||+++.+.+
T Consensus 85 ~~~l~~~f~l~~l~ied~l~~-~~rpk~e~~~~~lfivl~~~~~~~~~~~~~~~~v~~~l~~~~liTv~~~~~~~~---- 159 (363)
T 2iub_A 85 VQRVGEFFGIHPLVLEDILNV-HQRPKVEFFENYVFIVLKMFTYDKNLHELESEQVSLILTKNCVLMFQEKIGDVF---- 159 (363)
T ss_dssp HHHHHHHTTCCHHHHHHHHCC-SSCCEEEEETTEEEEEEEEEEEETTTTEEEEEEEEEEEETTEEEEEESSSCCSC----
T ss_pred HHHHHHHcCcChhHHHHHhCC-CCCCeEEEECCEEEEEEEeeeecccccccceEEEEEEEECCEEEEEEeCCCchH----
Confidence 68999999 999999999998 46999999999999765532 2222223 579999999999999999876442
Q ss_pred CcccccccCcccccCCCCCCCCCchhHHHHHHHHHHhhcCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035978 163 MGQSLLSEIPSVENHRGEPKEGSGIVIREHVLEFLLTMNHSEEADNPVPKSLSNLVVHIVDTHVDHLQDVVTKLEIELDS 242 (443)
Q Consensus 163 ~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ll~~lLd~ivd~y~~~l~~l~~~ld~ 242 (443)
+.+.+++. ... ......++.++++.++|.++|.|+++++.+++++|+
T Consensus 160 ----------------------------~~v~~rl~---~~~--~~~~~~~~~~ll~~lld~ivd~y~~~l~~l~~~id~ 206 (363)
T 2iub_A 160 ----------------------------DPVRERIR---YNR--GIIRKKRADYLLYSLIDALVDDYFVLLEKIDDEIDV 206 (363)
T ss_dssp ----------------------------HHHHHHHH---TTC--TTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------HHHHHHHH---hcC--CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23445552 110 111235899999999999999999999999999999
Q ss_pred HHHHHhhc--------HHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHHHHHHHH
Q 035978 243 VELELDKG--------GFALKKQMLEERRFPKMHLNLQRLLQYFRESKERCSSKHWFSSDDINALEELTGRLRRLKENVG 314 (443)
Q Consensus 243 LE~~v~~~--------~~~lrr~L~~lrR~~~ll~~~~rll~~l~~L~~~~~~~~~l~~e~~~~l~dv~d~~~~l~e~l~ 314 (443)
+|++++.+ ++.+|+++..+||+ +.++| +++.+|.+ ....+++++.+.+++|+.+|+.++.++++
T Consensus 207 lE~~v~~~~~~~~l~~l~~lrr~l~~lrr~----l~p~~--~vl~~L~~--~~~~~~~~~~~~~lrDv~d~~~~~~e~~~ 278 (363)
T 2iub_A 207 LEEEVLERPEKETVQRTHQLKRNLVELRKT----IWPLR--EVLSSLYR--DVPPLIEKETVPYFRDVYDHTIQIADTVE 278 (363)
T ss_dssp HHHHTTSSCCHHHHHHHHHHHHHHHHHHHH----HHHHH--HHHHHHHS--CCSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHHH----HHHHH--HHHHHHHh--cccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999863 46789999999998 67888 78888874 34567788889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 035978 315 FITNRVTAIQAGLDSWQAEQINRKLYYLSFLSIALLPLSIITGVFGMNVGGVPWTLQEEPKDGFRNVVFLCVAMLLLVLL 394 (443)
Q Consensus 315 ~l~e~l~~L~d~~~s~~s~q~N~iMk~LTiiS~IflP~T~IaGiyGMNf~~mP~~el~~~~yGy~~~l~lm~~i~~~~~~ 394 (443)
.+++++++++++|.+.+|++||++||+||++|+||+|||||||+|||||++|| |++|+ ||||+++++|+++++++++
T Consensus 279 ~~re~l~~l~d~~~s~is~~~N~imk~LTiit~IflP~T~IaGiyGMNf~~mP--el~~~-~Gy~~~l~~m~~i~~~~~~ 355 (363)
T 2iub_A 279 TFRDIVSGLLDVYLSSVSNKTNEVMKVLTIIATIFMPLTFIAGIYGMNFEYMP--ELRWK-WGYPVVLAVMGVIAVIMVV 355 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC-----------------CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCC--cccCc-HHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 88999 9999999999998877644
Q ss_pred HH
Q 035978 395 CF 396 (443)
Q Consensus 395 ~f 396 (443)
+|
T Consensus 356 ~F 357 (363)
T 2iub_A 356 YF 357 (363)
T ss_dssp TT
T ss_pred HH
Confidence 33
No 3
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.3e-34 Score=284.73 Aligned_cols=250 Identities=16% Similarity=0.124 Sum_probs=193.5
Q ss_pred CceeeEEEEEcCCCceeeeccccccCCCCceeEEEecCCChhhhhHHHHHHHHHhc-CChhhHHHhhhccCCCceeEEEC
Q 035978 39 GMVRKKAYIFDGHGKYYIKEWDLTDGIGNEFSWYHVELPKGSQKLAQSAQYLIDVL-CPPLKLQDILSLVSNGPFCGYVD 117 (443)
Q Consensus 39 ~~i~~~a~~~~g~g~~~~~~~~~~~~~~~~~~Wi~l~~p~~~e~~~~~~~~l~~~f-l~pl~~ed~L~~~e~rpr~e~~~ 117 (443)
.||.+.||.-+| .......+.-.....+++|||+.+|+++| +++|++.| +||++++||++.+ +|||+|.|+
T Consensus 22 ~mi~~~~~~~d~--~~~~~~ld~i~~~d~~~vWIdl~~Pt~eE-----l~~l~~~f~lh~l~leD~l~~~-~rpKie~~~ 93 (280)
T 4egw_A 22 SMITVIAIAKDG--SIVEPKLDEISFEDYRLIWIDCYDPKDEE-----LYKLSKKIGISVSDLQIGLDEQ-EIPRVEEDE 93 (280)
T ss_dssp -CCCCCEEEEEE--TTTCCCTTSCCTTSSSCEEEEEESCCHHH-----HHHHHHHHTCCHHHHHHHTCTT-CCCEEECCS
T ss_pred ceEEEEEEcCCC--CccCCcHHhhcCCCCeEEEEEeCCCCHHH-----HHHHHHHHCcCHHHHHHHhCcc-cCceEEEEC
Confidence 488778777654 32222233112245679999999999977 68999999 9999999999984 699999999
Q ss_pred CEEEEEEeCCCCCCCceEEEEEEEEeCCEEEEEEeCCCCCCCCCcCcccccccCcccccCCCCCCCCCchhHHHHHHHHH
Q 035978 118 GALVFRVNSPGPASSNFTFRIAARITDNSVITVSLGRVPRLGFSPMGQSLLSEIPSVENHRGEPKEGSGIVIREHVLEFL 197 (443)
Q Consensus 118 ~~l~~~v~~~~~~~~~~~~~l~~~l~~~~LITv~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l 197 (443)
+++|++++.+..+++..+.+++||+++++|||||+++.+.+ +.+.+++
T Consensus 94 d~~fivl~~~~~~~~~~t~~v~i~l~~~~lITv~~~~~~~~--------------------------------~~v~~~l 141 (280)
T 4egw_A 94 DFYLIIYKAPLFEEDITTTSLGIYIKNNLLLTIHSDKIKAI--------------------------------GRLHKLI 141 (280)
T ss_dssp SSEEEEEEEEECSSSCEEEEEEEEEETTEEEEEESSCCHHH--------------------------------HHHHHHH
T ss_pred CEEEEEEEeccccccceeeeEEEEEECCEEEEEecCCcchH--------------------------------HHHHHHH
Confidence 99997655432222223679999999999999999876432 2344454
Q ss_pred HhhcCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------HHHHHHHHHHHhcCcchhh
Q 035978 198 LTMNHSEEADNPVPKSLSNLVVHIVDTHVDHLQDVVTKLEIELDSVELELDKG--------GFALKKQMLEERRFPKMHL 269 (443)
Q Consensus 198 ~~l~~~~~~~~~~~~~~~~ll~~lLd~ivd~y~~~l~~l~~~ld~LE~~v~~~--------~~~lrr~L~~lrR~~~ll~ 269 (443)
. ..+. ......+|.+++|+++|.++|.|+++++.++++++++|++++.+ ++.+|+++..+||+ +
T Consensus 142 ~---~~~~-~~~~~~g~~~ll~~lld~ivd~y~~~l~~i~~~id~lE~~l~~~~~~~~l~~i~~lrr~l~~lrr~----l 213 (280)
T 4egw_A 142 S---TKKP-RIVFERGIGFLLYHILNEITRSYSRILMNLEDELEELEDKLLAGYDREVMEKILGLRKTLVYFHKS----L 213 (280)
T ss_dssp H---HSCC-SSSCTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHH----H
T ss_pred H---hcCc-ccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHH----H
Confidence 3 1111 01224678999999999999999999999999999999999874 47899999999999 7
Q ss_pred hhHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035978 270 NLQRLLQYFRESKERCSSKHWFSSDDINALEELTGRLRRLKENVGFITNRVTAIQAGLDSWQAEQINRKLY 340 (443)
Q Consensus 270 ~~~rll~~l~~L~~~~~~~~~l~~e~~~~l~dv~d~~~~l~e~l~~l~e~l~~L~d~~~s~~s~q~N~iMk 340 (443)
.|+| +++.+|.+ ....+++++++.||+|+.+|+.++.++++.+++.+++++++|.+.+|++||++||
T Consensus 214 ~p~~--~vl~~L~~--~~~~~~~~~~~~~l~Dv~dh~~~~~e~~~~~re~l~~l~d~~~s~is~~~N~iMK 280 (280)
T 4egw_A 214 IANR--DVLVLLKR--KYLPITTKEDRENFEDLYYDTLQLIDMSATYREVLTSMMDITLSLENIKMNQIMK 280 (280)
T ss_dssp HHHH--HHHHHHHH--SCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------
T ss_pred hhHH--HHHHHHHh--cCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 8888 78888874 5667889999999999999999999999999999999999999999999999998
No 4
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=100.00 E-value=2e-32 Score=266.13 Aligned_cols=241 Identities=17% Similarity=0.248 Sum_probs=196.8
Q ss_pred CCCceeeEEEEEcCCCceeeeccccccCCCCceeEEEecCCChhhhhHHHHHHHHHhc-CChhhHHHhhhccCCCceeEE
Q 035978 37 FPGMVRKKAYIFDGHGKYYIKEWDLTDGIGNEFSWYHVELPKGSQKLAQSAQYLIDVL-CPPLKLQDILSLVSNGPFCGY 115 (443)
Q Consensus 37 ~~~~i~~~a~~~~g~g~~~~~~~~~~~~~~~~~~Wi~l~~p~~~e~~~~~~~~l~~~f-l~pl~~ed~L~~~e~rpr~e~ 115 (443)
.+|+| +||.++|+|+++.++++.... +++++|||+..|++++ +++|.+.| +||++++|+++. ++|||+|.
T Consensus 13 ~~~~i--~a~~~~~~g~~~~~~~~~~~~-~~~~~Wi~l~~p~~~e-----~~~l~~~~~l~~l~~ed~~~~-~~rpk~e~ 83 (264)
T 3nvo_A 13 VPDAV--FAWLLDGRGGVKPLEDNDVID-SQHPCWLHLNYTHPDS-----ARWLASTPLLPNNVRDALAGE-SSRPRVSR 83 (264)
T ss_dssp CTTCS--EEEEECSSSCEEECCTTCEEC-TTSCEEEEEETTSHHH-----HHHHHHCTTSCTTTHHHHTTC-CCSCEEEE
T ss_pred CCccE--EEEEEcCCCCcccCCHHhccc-CCCCEEEEeCCCCHHH-----HHHHHhccCCCHHHHHHHhCC-CCCCceEE
Confidence 36889 999999999988887762222 6779999999999876 58999999 999999999988 57999999
Q ss_pred ECCEEEEEEeCCCCC--CCce-EEEEEEEEeCCEEEEEEeCCCCCCCCCcCcccccccCcccccCCCCCCCCCchhHHHH
Q 035978 116 VDGALVFRVNSPGPA--SSNF-TFRIAARITDNSVITVSLGRVPRLGFSPMGQSLLSEIPSVENHRGEPKEGSGIVIREH 192 (443)
Q Consensus 116 ~~~~l~~~v~~~~~~--~~~~-~~~l~~~l~~~~LITv~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~ 192 (443)
|++++|++++.+... ...+ +.+++||+++++|||||+++.+.+ +.
T Consensus 84 ~~~~~fivl~~~~~~~~~~~~~~~~v~~~l~~~~lITv~~~~~~~~--------------------------------~~ 131 (264)
T 3nvo_A 84 MGEGTLITLRCINGSTDERPDQLVAMRLYMDERFIVSTRQRKVLAL--------------------------------DD 131 (264)
T ss_dssp ETTEEEEEEECC----------CCEEEEEECSSEEEEEESSCCHHH--------------------------------HH
T ss_pred ECCEEEEEEEecccCCCCCCcceEEEEEEEeCCEEEEEecCCcCcH--------------------------------HH
Confidence 999999876653221 1122 569999999999999999875332 33
Q ss_pred HHHHHHhhcCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------HHHHHHHHHHHhcCc
Q 035978 193 VLEFLLTMNHSEEADNPVPKSLSNLVVHIVDTHVDHLQDVVTKLEIELDSVELELDKG-------GFALKKQMLEERRFP 265 (443)
Q Consensus 193 ~~~~l~~l~~~~~~~~~~~~~~~~ll~~lLd~ivd~y~~~l~~l~~~ld~LE~~v~~~-------~~~lrr~L~~lrR~~ 265 (443)
+.+++. . +..+.++.++++.+++.++|.|+++++.++++++++|+.++.+ ++.+|++++.+||+
T Consensus 132 v~~rl~---~-----~~~~~~~~~ll~~lld~ivd~y~~~l~~l~~~id~lE~~l~~~~~~~l~~l~~lrr~l~~lrr~- 202 (264)
T 3nvo_A 132 VVSDLQ---E-----GTGPVDCGGWLVDVCDALTDHASEFIEELHDKIIDLEDNLLDQQIPPRGFLALLRKQLIVMRRY- 202 (264)
T ss_dssp HHHHHH---T-----TCSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----CCCCTTHHHHHHHHHHHHHHH-
T ss_pred HHHHHH---h-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH-
Confidence 455552 1 2234689999999999999999999999999999999999853 68899999999999
Q ss_pred chhhhhHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035978 266 KMHLNLQRLLQYFRESKERCSSKHWFSSDDINALEELTGRLRRLKENVGFITNRVTAIQAGLDSWQAEQ 334 (443)
Q Consensus 266 ~ll~~~~rll~~l~~L~~~~~~~~~l~~e~~~~l~dv~d~~~~l~e~l~~l~e~l~~L~d~~~s~~s~q 334 (443)
+.|+| +++.+|.+ .+..+++++++.+|+|+.+|+.++.++++.++++++.++|+|++.+++|
T Consensus 203 ---l~p~~--~vl~~L~~--~~~~~~~~~~~~~l~Dv~d~~~~~~e~~~~~re~l~~l~d~~~s~~~e~ 264 (264)
T 3nvo_A 203 ---MAPQR--DVYARLAS--ERLPWMSDDHRRRMQDIADRLGRGLDEIDACIARTGIMADEIAQVMQES 264 (264)
T ss_dssp ---HHHHH--HHHHHHTT--SCCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ---HHhHH--HHHHHHHh--CCCccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 78888 88899874 4567889999999999999999999999999999999999988877653
No 5
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*
Probab=100.00 E-value=9.3e-32 Score=259.93 Aligned_cols=242 Identities=17% Similarity=0.214 Sum_probs=191.2
Q ss_pred CCceeeEEEEEcCCCceeeeccccccCCCCceeEEEecCCChhhhhHHHHHHHHHhcCChhhHHHhhhccCCCceeEEEC
Q 035978 38 PGMVRKKAYIFDGHGKYYIKEWDLTDGIGNEFSWYHVELPKGSQKLAQSAQYLIDVLCPPLKLQDILSLVSNGPFCGYVD 117 (443)
Q Consensus 38 ~~~i~~~a~~~~g~g~~~~~~~~~~~~~~~~~~Wi~l~~p~~~e~~~~~~~~l~~~fl~pl~~ed~L~~~e~rpr~e~~~ 117 (443)
+||| ++|.++|+|....++++.. ..++ +|||+..|++++ +++|++.-+||++++|+++. ++|||++.|+
T Consensus 5 ~~mi--~~~~~~~~~~~~~~~~~~~--~~~~-~Wi~l~~p~~~e-----~~~l~~~~l~~l~~ed~l~~-~~rpk~e~~~ 73 (252)
T 3ck6_A 5 GFMI--EHWDFSTPMATQETTTAEH--IQPN-HWYHCERLHPDI-----RGWLEDNHVPRATVDHLLAD-ESRPSFHPLD 73 (252)
T ss_dssp TTEE--EEEECSSSSCEECCSCCCS--CCTT-EEEEEETTCTTH-----HHHHHHTTCCHHHHHHHHCS-SCCCEEEECS
T ss_pred ccce--EEEEEcCCCCcccCChhhC--CCCC-EEEEecCCCHHH-----HHHHHHcCCCHHHHHHHhCC-CCCCceEEeC
Confidence 6899 8889998887665554322 2335 999999999766 57777655799999999988 5699999999
Q ss_pred C-EEEEEEeCCC--CCCC-ceEEEEEEEEeCCEEEEEEeCCCCCCCCCcCcccccccCcccccCCCCCCCCCchhHHHHH
Q 035978 118 G-ALVFRVNSPG--PASS-NFTFRIAARITDNSVITVSLGRVPRLGFSPMGQSLLSEIPSVENHRGEPKEGSGIVIREHV 193 (443)
Q Consensus 118 ~-~l~~~v~~~~--~~~~-~~~~~l~~~l~~~~LITv~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~ 193 (443)
+ ++|++++.+. +... ..+.+++||+++++|||||+++.+.+ +.+
T Consensus 74 d~~lfivl~~~~~~~~~~~~~~~~l~i~l~~~~lITvr~~~~~~~--------------------------------~~v 121 (252)
T 3ck6_A 74 DDNFMLILRGINMNENASPEDMLSIRILYFQGALISTRKIPSRAI--------------------------------MEI 121 (252)
T ss_dssp TTCEEEEEEECCCSTTCCTTSCEEEEEEEETTEEEEEESSCCHHH--------------------------------HHH
T ss_pred CceEEEEEecCccCCCCCcccEEEEEEEEeCCEEEEEeCCCcchH--------------------------------HHH
Confidence 9 9998765321 1111 12579999999999999999875432 234
Q ss_pred HHHHHhhcCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhcHHHHHHHHHHHhcCcchhhhh
Q 035978 194 LEFLLTMNHSEEADNPVPKSLSNLVVHIVDTHVDHLQDVVTKLEIELDSVELE--LDKGGFALKKQMLEERRFPKMHLNL 271 (443)
Q Consensus 194 ~~~l~~l~~~~~~~~~~~~~~~~ll~~lLd~ivd~y~~~l~~l~~~ld~LE~~--v~~~~~~lrr~L~~lrR~~~ll~~~ 271 (443)
.+++. . +..+.++.++++.|++.++|+|+++++.+++++|++|++ ....++.+|++++.+||+ +.|
T Consensus 122 ~~~l~---~-----~~~~~~~~~ll~~lld~ivd~y~~~l~~l~~~id~lE~~~~~~~~l~~lrr~l~~lrr~----l~p 189 (252)
T 3ck6_A 122 RQALA---E-----HKGPKSLASLLNQIIEGLNGKIDLYLDTIEETLNEFDVNDESTYNHIAAQKALISIKRF----IRP 189 (252)
T ss_dssp HHHHH---T-----TCSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCGGGCCHHHHHHHHHHHHHH----HHH
T ss_pred HHHHH---h-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHH----HHH
Confidence 45542 1 223468999999999999999999999999999999986 122468999999999999 788
Q ss_pred HHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035978 272 QRLLQYFRESKERCSSKHWFSSDDINALEELTGRLRRLKENVGFITNRVTAIQAGLDSWQAEQINRKL 339 (443)
Q Consensus 272 ~rll~~l~~L~~~~~~~~~l~~e~~~~l~dv~d~~~~l~e~l~~l~e~l~~L~d~~~s~~s~q~N~iM 339 (443)
+| +++.+|.+ .... ++++++.||+|+.||+.++.+++++++|+++.+++.|.+.+++|||++|
T Consensus 190 ~r--~~l~~L~r--~~~~-~~~~~~~~~rdv~d~~~~~~e~i~~~re~~~~l~d~~~s~~s~~~N~~m 252 (252)
T 3ck6_A 190 QQ--YAIRDLIE--SESE-LVTSRPHQYRFAHNNITRINETIEFYLGEVALFQDEIKHNRDEKTNKNS 252 (252)
T ss_dssp HH--HHHHHHHH--TTCH-HHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HH--HHHHHHHh--CCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 88 88888874 3444 7788899999999999999999999999999999999999999999998
No 6
>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1
Probab=99.95 E-value=4.1e-26 Score=222.21 Aligned_cols=227 Identities=13% Similarity=0.149 Sum_probs=148.2
Q ss_pred CCCCCCceeeEEEEEcCCCceeee---ccc-ccc-CCCCceeEEEecCC-ChhhhhHHHHHHHHHhc-CChhhHHHhhhc
Q 035978 34 RHHFPGMVRKKAYIFDGHGKYYIK---EWD-LTD-GIGNEFSWYHVELP-KGSQKLAQSAQYLIDVL-CPPLKLQDILSL 106 (443)
Q Consensus 34 ~~~~~~~i~~~a~~~~g~g~~~~~---~~~-~~~-~~~~~~~Wi~l~~p-~~~e~~~~~~~~l~~~f-l~pl~~ed~L~~ 106 (443)
....++|| .+|.|+.++. ... +.+ ... ..+++++|||+.+| ++++ +++|++.| +||++++|+++.
T Consensus 25 ~~~~~~~i--~~~~y~~~~~-~~~~~~~~~~~~~~~~~~~~~Wi~l~~p~~~~e-----~~~l~~~f~l~~l~~ed~l~~ 96 (269)
T 2bbh_A 25 KYREDFEI--EVMNYSIEEF-REFKTTDVESVLPFRDSSTPTWINITGIHRTDV-----VQRVGEFFGTHPLVLEDILNV 96 (269)
T ss_dssp SCCSCCEE--EEEEEETTEE-EEEEESCGGGTGGGGGCSSCEEEEEECTTCHHH-----HHHHHHHHTCCHHHHHHHHCT
T ss_pred CCCCCeEE--EEEEEcCCce-eecCCCCHHHHHhhccCCCeEEEEecCCCCHHH-----HHHHHHHcCCCHhHHHHHhCc
Confidence 34667899 5566665443 221 222 111 12457999999999 5655 68999999 999999999998
Q ss_pred cCCCceeEEECCEEEEEEeCC--CCCCCce-EEEEEEEEeCCEEEEEEeCCCCCCCCCcCcccccccCcccccCCCCCCC
Q 035978 107 VSNGPFCGYVDGALVFRVNSP--GPASSNF-TFRIAARITDNSVITVSLGRVPRLGFSPMGQSLLSEIPSVENHRGEPKE 183 (443)
Q Consensus 107 ~e~rpr~e~~~~~l~~~v~~~--~~~~~~~-~~~l~~~l~~~~LITv~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~ 183 (443)
++|||+|.|++++|++++.+ ......+ +.+++||+++++|||||+++.+.+
T Consensus 97 -~~rpk~e~~~d~lfivl~~~~~~~~~~~~~~~~v~~~l~~~~lITv~~~~~~~~------------------------- 150 (269)
T 2bbh_A 97 -HQRPKVEFFENYVFIVLKMFTYDKNLHELESEQVSLILTKNCVLMFQEKIGDVF------------------------- 150 (269)
T ss_dssp -TCCCEEEECSSEEEEEEEEEECCC--CCCEEEEEEEEEETTEEEEEESSSCCSC-------------------------
T ss_pred -CCCceEEEECCEEEEEEEeeeecCCcCceeEEEEEEEEECCEEEEEECCCCCcH-------------------------
Confidence 46999999999998765532 2221223 679999999999999999886543
Q ss_pred CCchhHHHHHHHHHHhhcCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------HHHHH
Q 035978 184 GSGIVIREHVLEFLLTMNHSEEADNPVPKSLSNLVVHIVDTHVDHLQDVVTKLEIELDSVELELDKG--------GFALK 255 (443)
Q Consensus 184 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ll~~lLd~ivd~y~~~l~~l~~~ld~LE~~v~~~--------~~~lr 255 (443)
+.+.+++. ... ......++.+++++|++.++|.|+++++.+++++|++|++++.+ ++.+|
T Consensus 151 -------~~v~~rl~---~~~--~~~~~~~~~~ll~~lld~ivd~y~~~l~~i~~~id~lE~~v~~~~~~~~l~~l~~lr 218 (269)
T 2bbh_A 151 -------DPVRERIR---YNR--GIIRKKRADYLLYSLIDALVDDYFVLLEKIDDEIDVLEEEVLERPEKETVQRTHQLK 218 (269)
T ss_dssp -------HHHHHHHH---TTC--TTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHH
T ss_pred -------HHHHHHHH---hcC--CchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 23445552 110 01123688899999999999999999999999999999999863 47899
Q ss_pred HHHHHHhcCcchhhhhHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHHHHHHHH
Q 035978 256 KQMLEERRFPKMHLNLQRLLQYFRESKERCSSKHWFSSDDINALEELTGRLRRLKENVG 314 (443)
Q Consensus 256 r~L~~lrR~~~ll~~~~rll~~l~~L~~~~~~~~~l~~e~~~~l~dv~d~~~~l~e~l~ 314 (443)
++++.+||+ +.+++ +++.+|.+ ....+++++.+.||+|+.||+.++.++++
T Consensus 219 r~l~~lrr~----l~p~~--~vl~~L~~--~~~~~~~~~~~~~lrDv~dh~~r~~e~~e 269 (269)
T 2bbh_A 219 RNLVELRKT----IWPLR--EVLSSLYR--DVPPLIEKETVPYFRDVYDHTIQIADTVE 269 (269)
T ss_dssp HHHHHHHHH----HHHHH--HHHHHHHH--HHHHHTC----------------------
T ss_pred HHHHHHHHH----HHHHH--HHHHHHHh--cCCccCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999 67887 77777764 23456788899999999999999998764
No 7
>2hn1_A CORA, magnesium and cobalt transporter; integral membrane protein fragment, metal transporter protei divalent cations, metal transport; 2.90A {Archaeoglobus fulgidus}
Probab=99.94 E-value=3.4e-25 Score=215.68 Aligned_cols=222 Identities=17% Similarity=0.096 Sum_probs=168.7
Q ss_pred CCCCCceeeEEEEEcCCCceee----ecccc--cc-CCCCceeEEEecCC-ChhhhhHHHHHHHHHhc-CChhhHHHhhh
Q 035978 35 HHFPGMVRKKAYIFDGHGKYYI----KEWDL--TD-GIGNEFSWYHVELP-KGSQKLAQSAQYLIDVL-CPPLKLQDILS 105 (443)
Q Consensus 35 ~~~~~~i~~~a~~~~g~g~~~~----~~~~~--~~-~~~~~~~Wi~l~~p-~~~e~~~~~~~~l~~~f-l~pl~~ed~L~ 105 (443)
+..++|| .++.|+.++.... .+.+. .. ..+++++|||+.+| ++++ +++|++.| +||++++|+++
T Consensus 28 ~~~~~~i--~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wi~l~~p~~~~e-----~~~l~~~f~l~~l~~ed~l~ 100 (266)
T 2hn1_A 28 KVEETKI--TAAIYDEKSVEFKELEVGELESVVRSALALNKKLWIDVVGVHDESL-----IAKICEFLGIHPLAAEDILN 100 (266)
T ss_dssp CSSCCCC--EEEEECSSSSCEECCCCCCSHHHHSTTCCTTSEEEEEECCCCCHHH-----HHHHHHTTTCCHHHHHHHHB
T ss_pred CCCCeEE--EEEEEeCCeEEeccCCCCCHHHHHHhhcCCCCeEEEEeCCCCCHHH-----HHHHHHHcCCCHhHHHHHhC
Confidence 4567799 5666676554212 12111 11 12457999999999 5655 68999999 99999999999
Q ss_pred ccCCCceeEEECCEEEEEEeCCCCCCCceEEEEEEEEeCCEEEEEEeCCCCCCCCCcCcccccccCcccccCCCCCCCCC
Q 035978 106 LVSNGPFCGYVDGALVFRVNSPGPASSNFTFRIAARITDNSVITVSLGRVPRLGFSPMGQSLLSEIPSVENHRGEPKEGS 185 (443)
Q Consensus 106 ~~e~rpr~e~~~~~l~~~v~~~~~~~~~~~~~l~~~l~~~~LITv~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~ 185 (443)
. ++|||+|.|++++|++++.+...+...+.+++||+++++|||||+++.+.+
T Consensus 101 ~-~~rpk~e~~~d~lfivl~~~~~~~~~~~~~v~~~l~~~~lITv~~~~~~~~--------------------------- 152 (266)
T 2hn1_A 101 T-AQRVKIEDYDDHLFLVLKILLYNETLEIDQLSLVLKKNLVATFEEREYWIL--------------------------- 152 (266)
T ss_dssp T-TCCSEEEECSSEEEEEEEEEEESSSEEEEEEEEEEETTEEEEEESSSSCST---------------------------
T ss_pred C-CCCCeEEEECCEEEEEEEeccccCccceEEEEEEEECCEEEEEEcCCCChH---------------------------
Confidence 8 469999999999997655322111222579999999999999999886543
Q ss_pred chhHHHHHHHHHHhhcCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------HHHHHHHH
Q 035978 186 GIVIREHVLEFLLTMNHSEEADNPVPKSLSNLVVHIVDTHVDHLQDVVTKLEIELDSVELELDKG-------GFALKKQM 258 (443)
Q Consensus 186 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ll~~lLd~ivd~y~~~l~~l~~~ld~LE~~v~~~-------~~~lrr~L 258 (443)
+.+.+++. ..+ .....++.+++++|++.++|.|+++++.+++++|++|++++.+ ++.+|+++
T Consensus 153 -----~~v~~rl~---~~~---~~~~~~~~~ll~~lld~ivd~y~~~l~~i~~~id~lE~~l~~~~~~~l~~l~~lrr~l 221 (266)
T 2hn1_A 153 -----DSIRSRLK---SGG---RMRKLAGDYLAYTILDAVVDSYFEALLKISDEIEVLEDEVVSGDSTLIGKIHSLKREI 221 (266)
T ss_dssp -----HHHHHHHH---SSS---HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHHHHH
T ss_pred -----HHHHHHHH---hCC---chhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 23444542 111 0012589999999999999999999999999999999999852 58899999
Q ss_pred HHHhcCcchhhhhHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHHHH
Q 035978 259 LEERRFPKMHLNLQRLLQYFRESKERCSSKHWFSSDDINALEELTGRLRRLK 310 (443)
Q Consensus 259 ~~lrR~~~ll~~~~rll~~l~~L~~~~~~~~~l~~e~~~~l~dv~d~~~~l~ 310 (443)
+.+||+ +.+++ +++.+|.+ ....+++++.+.+|+|+.||+.++.
T Consensus 222 ~~lrr~----l~p~~--~vl~~L~~--~~~~~~~~~~~~~lrDv~dh~~r~~ 265 (266)
T 2hn1_A 222 LAFRNA----VWPLR--DVLSFFTR--VEHELIGEEVKVYYRDVYDHAVRLM 265 (266)
T ss_dssp HHHHHH----HTTHH--HHHHHHHH--CCCTTSCTTTHHHHHHHHHHHHHHT
T ss_pred HHHHHH----HHHHH--HHHHHHHh--cCCccCCHHHHHHHHHHHHHHHHHh
Confidence 999999 78888 78888874 4567888999999999999999875
No 8
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=88.92 E-value=11 Score=37.37 Aligned_cols=164 Identities=14% Similarity=0.129 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHHHHhh---cHHH-----HHHHHHHHhcCcchhhhhHHHHHHHHHHHhhccCCCCCChhhHHHHHHH
Q 035978 231 DVVTKLEIELDSVELELDK---GGFA-----LKKQMLEERRFPKMHLNLQRLLQYFRESKERCSSKHWFSSDDINALEEL 302 (443)
Q Consensus 231 ~~l~~l~~~ld~LE~~v~~---~~~~-----lrr~L~~lrR~~~ll~~~~rll~~l~~L~~~~~~~~~l~~e~~~~l~dv 302 (443)
.+++....-++.+++++-. .+.. ..+++..+||.+ ..+.|.+.....+.. ... ..+....-.+.
T Consensus 188 ~ivd~y~~~l~~l~~~id~lE~~v~~~~~~~~l~~l~~lrr~l---~~lrr~l~p~~~vl~---~L~--~~~~~~~~~~~ 259 (363)
T 2iub_A 188 ALVDDYFVLLEKIDDEIDVLEEEVLERPEKETVQRTHQLKRNL---VELRKTIWPLREVLS---SLY--RDVPPLIEKET 259 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH---HHH--SCCSSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH---HHHHHHHHHHHHHHH---HHH--hcccccCCHHH
Confidence 4556667777777777643 1111 012334444432 455554444444331 111 00000012345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCCCchH
Q 035978 303 TGRLRRLKENVGFITNRVTAIQAGLDSW----QAEQINRKLYYLSFLSIALLPLSIITGVFGMNVGGVPWTLQEEPKDGF 378 (443)
Q Consensus 303 ~d~~~~l~e~l~~l~e~l~~L~d~~~s~----~s~q~N~iMk~LTiiS~IflP~T~IaGiyGMNf~~mP~~el~~~~yGy 378 (443)
...++.+.+++..+.+.++.+.+...+. .+...|+.=.++-++|++-+...-.|=|-|. | ||=+...+.- ...
T Consensus 260 ~~~lrDv~d~~~~~~e~~~~~re~l~~l~d~~~s~is~~~N~imk~LTiit~IflP~T~IaGi-y-GMNf~~mPel-~~~ 336 (363)
T 2iub_A 260 VPYFRDVYDHTIQIADTVETFRDIVSGLLDVYLSSVSNKTNEVMKVLTIIATIFMPLTFIAGI-Y-GMNFEYMPEL-RWK 336 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-C-C-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h-cccCCCCCcc-cCc
Confidence 5566777888888888888777666554 4555555557888999999999889999995 5 5887544332 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035978 379 RNVVFLCVAMLLLVLLCFLCPAAYSRIAAWQ 409 (443)
Q Consensus 379 ~~~l~lm~~i~~~~~~~f~~~~~y~~~~~w~ 409 (443)
|.++++++++++++++ .+.|+|+|+|.
T Consensus 337 ~Gy~~~l~~m~~i~~~----~~~~Fkrk~Wl 363 (363)
T 2iub_A 337 WGYPVVLAVMGVIAVI----MVVYFKKKKWL 363 (363)
T ss_dssp --CHHHHHHHHHHHHH----HHTTTTSCC--
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHcccC
Confidence 3444444444443333 34588888883
No 9
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=86.01 E-value=27 Score=34.04 Aligned_cols=102 Identities=10% Similarity=0.149 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCCC
Q 035978 300 EELTGRLRRLKENVGFITNRVTAIQAGLDSWQ----AEQINRKLYYLSFLSIALLPLSIITGVFGMNVGGVPWTLQEEPK 375 (443)
Q Consensus 300 ~dv~d~~~~l~e~l~~l~e~l~~L~d~~~s~~----s~q~N~iMk~LTiiS~IflP~T~IaGiyGMNf~~mP~~el~~~~ 375 (443)
.+....+..+.+++..+.+.++.+.+...+.. +...|+.=.++-++|++-+...-.|=|-|. | ||=+...+..
T Consensus 233 ~~~~~~l~dv~~~~~~l~e~~~~~~e~l~~l~d~~~s~is~~~N~~mk~LTiit~IflP~T~IaGi-y-GMNf~~mPel- 309 (339)
T 4ev6_A 233 KEDRENFEDLYYDTLQLIDMSATYREVLTSMMDITLSLENIKMNQIMKILTMVTTIFAVPMWITGI-Y-GMNFSYLPLA- 309 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHH-T-TCCCSCCTTS-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-c-cCcCCCCCCc-
Confidence 34455666677777777777777776655543 444444446677777777777777777784 4 6887555444
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035978 376 DGFRNVVFLCVAMLLLVLLCFLCPAAYSRIAAW 408 (443)
Q Consensus 376 yGy~~~l~lm~~i~~~~~~~f~~~~~y~~~~~w 408 (443)
..-|.++++++++++++++.+ .|+|+|+|
T Consensus 310 ~~~~gy~~~l~~m~~~~~~~~----~~fkrk~W 338 (339)
T 4ev6_A 310 NNPQGFWLVMALMVVIIMIFV----YIFRRSGW 338 (339)
T ss_dssp SCTTHHHHHHHHHHHHHHHHH----HHHHTTTC
T ss_pred cCchHHHHHHHHHHHHHHHHH----HHHHHcCC
Confidence 344556666665555444333 47777777
No 10
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=43.75 E-value=1.9e+02 Score=28.87 Aligned_cols=29 Identities=14% Similarity=0.155 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035978 218 VVHIVDTHVDHLQDVVTKLEIELDSVELE 246 (443)
Q Consensus 218 l~~lLd~ivd~y~~~l~~l~~~ld~LE~~ 246 (443)
|..+|+..-..+...++.|...|+++.+.
T Consensus 54 Lqg~Ldk~er~~~~rIe~L~~~L~~~s~s 82 (390)
T 1deq_A 54 MKGLIDEVDQDFTSRINKLRDSLFNYQKN 82 (390)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 46677777777777888888888777654
No 11
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=38.08 E-value=65 Score=20.07 Aligned_cols=26 Identities=31% Similarity=0.495 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035978 223 DTHVDHLQDVVTKLEIELDSVELELD 248 (443)
Q Consensus 223 d~ivd~y~~~l~~l~~~ld~LE~~v~ 248 (443)
+.-+.....++.++...+|.+|+.+.
T Consensus 5 ee~~r~l~~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 5 EEDVRNLNAIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455667778888888888888763
No 12
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=27.39 E-value=92 Score=27.70 Aligned_cols=58 Identities=12% Similarity=0.008 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhhcccccCCCCCC------CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035978 345 LSIALLPLSIITGVFGMNVGGVPWT------LQEEPKDGFRNVVFLCVAMLLLVLLCFLCPAAYSRIA 406 (443)
Q Consensus 345 iS~IflP~T~IaGiyGMNf~~mP~~------el~~~~yGy~~~l~lm~~i~~~~~~~f~~~~~y~~~~ 406 (443)
+.-|.+|+--+ +=|.||+++-+. ..... ||-++-.++-.++++.+ +||++-..+++++
T Consensus 58 V~dIImPlIgl--~Gg~dfs~l~~~l~~~~~~~~i~-yG~Fi~avInFlIIA~v-IYFliVk~iNklk 121 (174)
T 2oar_A 58 TDSIITPLINR--IGVNAQSDVGILRIGIGGGQTID-LNVLLSAAINFFLIAFA-VYFLVVLPYNTLR 121 (174)
T ss_dssp HHHHHHHHHHH--HCCCCEEECCCCTTTCCSCEEEC-HHHHHHHHHHHHHHHHH-HHHHTHHHHHHHH
T ss_pred HHHhHHHHHHh--hCCCCcccceEEEecCCCceeee-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 45566776332 347798765321 00124 66665555544444433 3344445556553
No 13
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=24.11 E-value=4e+02 Score=24.07 Aligned_cols=93 Identities=9% Similarity=0.027 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHhh---cHHH----HHHHHHHHhcCcchhhhhHHHHHHHHHHHhhccCCCCCChhhHHHHHHHH
Q 035978 231 DVVTKLEIELDSVELELDK---GGFA----LKKQMLEERRFPKMHLNLQRLLQYFRESKERCSSKHWFSSDDINALEELT 303 (443)
Q Consensus 231 ~~l~~l~~~ld~LE~~v~~---~~~~----lrr~L~~lrR~~~ll~~~~rll~~l~~L~~~~~~~~~l~~e~~~~l~dv~ 303 (443)
.+++....-++++++++-. .+.. ...++..+||.+ +.+.|.+.....+.. . ....+....-.+..
T Consensus 155 ~ivd~y~~~l~~l~~~id~lE~~l~~~~~~~l~~l~~lrr~l---~~lrr~l~p~~~vl~---~--L~~~~~~~~~~~~~ 226 (264)
T 3nvo_A 155 ALTDHASEFIEELHDKIIDLEDNLLDQQIPPRGFLALLRKQL---IVMRRYMAPQRDVYA---R--LASERLPWMSDDHR 226 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC----CCCCTTHHHHHHHHH---HHHHHHHHHHHHHHH---H--HTTSCCTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHhHHHHHH---H--HHhCCCccCChHHH
Confidence 3555666667777766643 2221 112355555543 566665555555432 1 11111111124556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035978 304 GRLRRLKENVGFITNRVTAIQAGLDSWQ 331 (443)
Q Consensus 304 d~~~~l~e~l~~l~e~l~~L~d~~~s~~ 331 (443)
..+..+.+++..+.+.++.+.+...++.
T Consensus 227 ~~l~Dv~d~~~~~~e~~~~~re~l~~l~ 254 (264)
T 3nvo_A 227 RRMQDIADRLGRGLDEIDACIARTGIMA 254 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777888888888777776665554
No 14
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=23.31 E-value=6.5e+02 Score=26.19 Aligned_cols=94 Identities=15% Similarity=0.157 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH-hcCcchhhhhHHHHHHHHHHHhhccCCCCCChhh
Q 035978 217 LVVHIVDTHVDHLQDVVTKLEIELDSVELELDKGGFALKKQMLEE-RRFPKMHLNLQRLLQYFRESKERCSSKHWFSSDD 295 (443)
Q Consensus 217 ll~~lLd~ivd~y~~~l~~l~~~ld~LE~~v~~~~~~lrr~L~~l-rR~~~ll~~~~rll~~l~~L~~~~~~~~~l~~e~ 295 (443)
-|..+|+..-..+...|++|..++++++ +-..+.+.+-+.+... |.-. ......-..+ ..++++.
T Consensus 50 rLQglLdkqErDltkrINELKnqLEdls-KnsKdseqy~k~~~E~Lr~rq---~q~~dNdNty----------nE~S~EL 115 (562)
T 3ghg_A 50 RMKGLIDEVNQDFTNRINKLKNSLFEYQ-KNNKDSHSLTTNIMEILRGDF---SSANNRDNTY----------NRVSEDL 115 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHH-HHHHHHHHHHHHHHHTTSSHH---HHHHHHHHHH----------HHTTHHH
T ss_pred chhhhHHhhcCcHHHHHHHHHHHHHHHH-hhchhHHHHHHHHHHHHHHHH---HhhhccchhH----------HHHHHHH
Confidence 3566777777778888888889998884 3333333332333322 2211 0000000111 1234555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035978 296 INALEELTGRLRRLKENVGFITNRVTAIQ 324 (443)
Q Consensus 296 ~~~l~dv~d~~~~l~e~l~~l~e~l~~L~ 324 (443)
++.+..+.+.+...+..+..|+..|+.+.
T Consensus 116 RRrIqyLKekVdnQlsnIrvLQsnLedq~ 144 (562)
T 3ghg_A 116 RSRIEVLKRKVIEKVQHIQLLQKNVRAQL 144 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666665566666666655544
No 15
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=20.45 E-value=1.1e+02 Score=18.75 Aligned_cols=24 Identities=13% Similarity=0.139 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 035978 378 FRNVVFLCVAMLLLVLLCFLCPAA 401 (443)
Q Consensus 378 y~~~l~lm~~i~~~~~~~f~~~~~ 401 (443)
|-++.++.++++++.+-+|+|..+
T Consensus 6 weviaglvalltflafgfwlfkyl 29 (32)
T 2lx0_A 6 WEVIAGLVALLTFLAFGFWLFKYL 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666667777777776433
No 16
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=20.22 E-value=2.3e+02 Score=21.60 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=15.1
Q ss_pred HHHHHHHHH--HHHHHHHhhhhhccc
Q 035978 397 LCPAAYSRI--AAWQRRRAMRRSWSL 420 (443)
Q Consensus 397 ~~~~~y~~~--~~w~~~~~~~~~w~~ 420 (443)
++..+++++ +.|.+.+... +|.-
T Consensus 34 ~~~~i~DrrE~~kFEkE~~~~-~w~~ 58 (79)
T 2knc_B 34 LLITIHDRKEFAKFEEERARA-KWDT 58 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhc-cccc
Confidence 344455553 6888888877 6954
Done!