BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035980
         (857 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3DC8|A Chain A, Crystal Structure Of Dihydropyrimidinase From
           Sinorhizobium Meliloti
 pdb|3DC8|B Chain B, Crystal Structure Of Dihydropyrimidinase From
           Sinorhizobium Meliloti
          Length = 490

 Score = 30.8 bits (68), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 15/68 (22%)

Query: 376 GTSAREFWWDPKRLADTLGSENEETCTTYNML--KVSRHLFRWTKEIAYADYYERALTNG 433
           G  A    WDPKR + T+ ++ +++   YN+   K    L R+T            LT G
Sbjct: 385 GADADLVVWDPKR-SKTISAKTQQSAIDYNVFEGKTVTGLPRFT------------LTRG 431

Query: 434 VLSIQRGT 441
           V+SI+ GT
Sbjct: 432 VVSIEEGT 439


>pdb|2AJA|A Chain A, X-Ray Structure Of An Ankyrin Repeat Family Protein Q5zsv0
           From Legionella Pneumophila. Northeast Structural
           Genomics Consortium Target Lgr21.
 pdb|2AJA|B Chain B, X-Ray Structure Of An Ankyrin Repeat Family Protein Q5zsv0
           From Legionella Pneumophila. Northeast Structural
           Genomics Consortium Target Lgr21
          Length = 376

 Score = 30.4 bits (67), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 6/80 (7%)

Query: 158 ISELRGHFVGHYLSASAQMWASTHNATIKEKMSTVVFSLSECQNKIGTGYLSAFPTELFD 217
           + +L   +  HY   + Q+W+  H   IK ++   V +++ C + + T  L      L  
Sbjct: 63  VRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCL------LLT 116

Query: 218 SFEALKPVWAPYYTIHKILA 237
           S E +K + A  Y   ++ A
Sbjct: 117 SDEIVKVIQAENYQAFRLAA 136


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.133    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,149,453
Number of Sequences: 62578
Number of extensions: 1028836
Number of successful extensions: 2022
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2022
Number of HSP's gapped (non-prelim): 3
length of query: 857
length of database: 14,973,337
effective HSP length: 107
effective length of query: 750
effective length of database: 8,277,491
effective search space: 6208118250
effective search space used: 6208118250
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)