BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035980
         (857 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q29536|KPYR_CANFA Pyruvate kinase isozymes R/L OS=Canis familiaris GN=PKLR PE=2 SV=2
          Length = 574

 Score = 36.2 bits (82), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 14/91 (15%)

Query: 67  SKILGDQKDEVSWALLYRKIKNPGGFDLPGNFLKEVSLHDVWLDQSSVLWRAQQ------ 120
           S+I   Q+D     L    I  PGG   P  +L+  S+  + L+  +  ++ QQ      
Sbjct: 14  SRISKSQRDLAKSIL----IGAPGG---PAGYLRRASVAQLTLELGTAFFQQQQLSAAMA 66

Query: 121 -TNLEYLLMLDVDSLVWSFRKTASLPTPGKA 150
            T LE+L +LD+DS   + R T+ + T G A
Sbjct: 67  DTFLEHLCLLDIDSEPVAARSTSIIATIGPA 97


>sp|Q7NJT1|GLPK_GLOVI Glycerol kinase OS=Gloeobacter violaceus (strain PCC 7421) GN=glpK
           PE=3 SV=1
          Length = 497

 Score = 35.4 bits (80), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 132 DSLVWSFRKTASLPTPGKAYGGWENPISELRGHFVGHYLSASAQMWASTHN 182
           +++VW  R+TA+L    +A G WE PI +  G  +  Y SA+   W   H 
Sbjct: 104 NAIVWQDRRTAALCQKLRAEG-WEAPIRQRTGLVIDAYFSATKLAWLLAHR 153


>sp|Q16799|RTN1_HUMAN Reticulon-1 OS=Homo sapiens GN=RTN1 PE=1 SV=1
          Length = 776

 Score = 35.4 bits (80), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 17/111 (15%)

Query: 689 VSGTDAALHATFRLILKDASLSNFSSLNNVIGKSVMLEPFDFPGMLVQQGKEDELVVSES 748
           V+G  +A+  TF    KD   S ++SL + I      +   F G+L  Q +   + +SES
Sbjct: 82  VAGVSSAMDHTFSTTSKDGEGSCYTSLISDICYPPQEDSTYFTGIL--QKENGHVTISES 139

Query: 749 PKEMGSSGFRL--VAGLDKRNETVSLEAENRKGCFVS-SGVNFEPGASLKL 796
           P+E+G+ G  L  V G++ R            G F S SG+   P  S ++
Sbjct: 140 PEELGTPGPSLPDVPGIESR------------GLFSSDSGIEMTPAESTEV 178


>sp|Q5IS59|RTN1_PANTR Reticulon-1 OS=Pan troglodytes GN=RTN1 PE=2 SV=1
          Length = 776

 Score = 35.0 bits (79), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 17/111 (15%)

Query: 689 VSGTDAALHATFRLILKDASLSNFSSLNNVIGKSVMLEPFDFPGMLVQQGKEDELVVSES 748
           V+G  +A+  TF    KD   S ++SL + I      +   F G+L  Q +   + +SES
Sbjct: 82  VAGVSSAMDHTFSTTSKDGEGSCYTSLISDICYPPQEDSTYFTGIL--QRENGHVTISES 139

Query: 749 PKEMGSSGFRL--VAGLDKRNETVSLEAENRKGCFVS-SGVNFEPGASLKL 796
           P+E+G+ G  L  V G++ R            G F S SG+   P  S ++
Sbjct: 140 PEELGTPGSSLPDVPGIESR------------GLFSSDSGIEMTPAESTEV 178


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.134    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 326,190,333
Number of Sequences: 539616
Number of extensions: 13854858
Number of successful extensions: 28435
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 28432
Number of HSP's gapped (non-prelim): 10
length of query: 857
length of database: 191,569,459
effective HSP length: 126
effective length of query: 731
effective length of database: 123,577,843
effective search space: 90335403233
effective search space used: 90335403233
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)