Query 035983
Match_columns 109
No_of_seqs 106 out of 245
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 08:14:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035983.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035983hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3801 Uncharacterized conser 99.7 4.8E-16 1E-20 104.7 8.9 78 2-81 6-83 (94)
2 PF13232 Complex1_LYR_1: Compl 99.6 6.2E-15 1.3E-19 91.6 7.9 60 4-65 2-61 (61)
3 PF05347 Complex1_LYR: Complex 99.5 2.8E-13 6.1E-18 82.9 7.3 57 4-62 2-58 (59)
4 KOG3426 NADH:ubiquinone oxidor 97.7 0.00011 2.3E-09 51.8 5.4 68 2-70 23-94 (124)
5 KOG4620 Uncharacterized conser 97.7 0.00031 6.7E-09 46.0 6.9 61 3-66 9-71 (80)
6 PF13233 Complex1_LYR_2: Compl 97.6 0.00036 7.9E-09 46.8 7.3 64 5-69 1-74 (104)
7 KOG4100 Uncharacterized conser 96.0 0.054 1.2E-06 38.3 7.5 74 4-86 11-84 (125)
8 KOG3466 NADH:ubiquinone oxidor 95.7 0.044 9.6E-07 40.0 6.2 57 3-61 14-70 (157)
9 PF04716 ETC_C1_NDUFA5: ETC co 68.1 25 0.00054 21.5 6.2 50 4-54 6-55 (57)
10 PF12960 DUF3849: Protein of u 65.5 39 0.00084 24.3 6.6 54 24-80 27-81 (133)
11 COG5612 Predicted integral mem 64.4 52 0.0011 23.9 7.2 64 5-71 51-115 (148)
12 PRK06444 prephenate dehydrogen 63.5 18 0.0004 27.1 4.9 44 7-60 152-195 (197)
13 PLN02256 arogenate dehydrogena 60.6 23 0.00049 28.2 5.1 43 8-59 239-281 (304)
14 PF13801 Metal_resist: Heavy-m 54.1 50 0.0011 21.1 5.2 41 28-70 69-109 (125)
15 PF04695 Pex14_N: Peroxisomal 49.2 5.4 0.00012 28.2 -0.1 49 11-62 4-52 (136)
16 PF08025 Antimicrobial_3: Spid 49.0 24 0.00051 19.8 2.5 32 6-45 3-34 (37)
17 PF06041 DUF924: Bacterial pro 48.0 8 0.00017 28.8 0.7 30 10-39 69-98 (188)
18 PRK08868 flagellar protein Fla 47.7 79 0.0017 23.0 5.8 65 39-103 62-127 (144)
19 PF13374 TPR_10: Tetratricopep 42.0 31 0.00067 17.8 2.3 20 4-23 20-39 (42)
20 PF08672 APC2: Anaphase promot 41.9 23 0.0005 21.8 2.0 24 58-81 36-60 (60)
21 COG5040 BMH1 14-3-3 family pro 40.8 1.5E+02 0.0033 23.3 6.7 37 51-87 92-129 (268)
22 PF03732 Retrotrans_gag: Retro 38.7 57 0.0012 19.9 3.5 36 1-40 7-42 (96)
23 PF03564 DUF1759: Protein of u 38.0 1.3E+02 0.0028 20.4 5.7 44 20-63 1-44 (145)
24 PRK11032 hypothetical protein; 37.4 1.1E+02 0.0023 22.6 5.2 51 4-55 3-53 (160)
25 PF13260 DUF4051: Protein of u 36.2 80 0.0017 19.2 3.6 29 5-34 15-43 (54)
26 PF03735 ENT: ENT domain; Int 35.7 1.2E+02 0.0026 19.4 5.7 41 6-51 10-50 (73)
27 PF02417 Chromate_transp: Chro 35.3 1.7E+02 0.0036 20.9 6.2 49 6-58 3-51 (169)
28 PF13748 ABC_membrane_3: ABC t 34.7 1.4E+02 0.003 23.5 5.7 57 10-68 58-116 (237)
29 PF03646 FlaG: FlaG protein; 34.4 43 0.00092 22.2 2.5 58 44-101 33-91 (107)
30 COG1329 Transcriptional regula 34.3 1.4E+02 0.003 22.4 5.3 44 5-48 106-151 (166)
31 PRK08452 flagellar protein Fla 34.2 1.7E+02 0.0036 20.7 6.1 59 44-102 49-108 (124)
32 PF03799 FtsQ: Cell division p 32.7 1.3E+02 0.0029 19.1 4.9 48 49-99 42-89 (117)
33 PF09164 VitD-bind_III: Vitami 31.5 1.4E+02 0.0031 19.1 4.9 34 26-59 10-43 (68)
34 COG2059 ChrA Chromate transpor 31.4 2.3E+02 0.005 21.4 6.4 53 2-58 4-56 (195)
35 PRK07738 flagellar protein Fla 31.0 1.9E+02 0.0041 20.3 5.4 58 44-101 42-100 (117)
36 KOG2391 Vacuolar sorting prote 30.6 88 0.0019 26.1 4.2 69 2-70 208-278 (365)
37 PF11365 DUF3166: Protein of u 30.6 71 0.0015 21.7 3.1 39 46-84 2-46 (96)
38 KOG3282 Uncharacterized conser 30.5 2E+02 0.0044 22.0 5.8 41 4-59 100-146 (190)
39 PF02478 Pneumo_phosprot: Pneu 29.8 2.1E+02 0.0045 23.0 5.9 69 6-82 177-246 (279)
40 PF07028 DUF1319: Protein of u 28.2 2.2E+02 0.0047 20.4 5.3 44 23-67 68-111 (126)
41 COG3189 Uncharacterized conser 28.1 1.3E+02 0.0029 21.2 4.2 27 17-43 52-78 (117)
42 PF01397 Terpene_synth: Terpen 26.6 1.8E+02 0.0038 21.6 4.9 46 10-57 134-182 (183)
43 TIGR01599 PYST-A Plasmodium yo 26.1 1E+02 0.0022 23.6 3.6 26 44-69 8-33 (208)
44 KOG2003 TPR repeat-containing 23.6 4.7E+02 0.01 23.4 7.4 65 4-77 678-745 (840)
45 PRK05583 ribosomal protein L7A 23.5 1E+02 0.0022 20.8 2.9 31 1-32 1-31 (104)
46 KOG0816 Protein involved in mR 22.7 64 0.0014 25.1 1.9 39 1-40 48-87 (223)
47 PF09860 DUF2087: Uncharacteri 22.3 2.2E+02 0.0047 18.0 5.8 61 20-81 6-70 (71)
48 PF10421 OAS1_C: 2'-5'-oligoad 20.2 2.2E+02 0.0047 21.6 4.4 46 6-58 6-52 (190)
49 COG0029 NadB Aspartate oxidase 20.1 3.6E+02 0.0079 23.7 6.1 57 33-89 65-121 (518)
50 PRK01903 rnpA ribonuclease P; 20.0 86 0.0019 22.1 2.0 26 17-43 58-83 (133)
No 1
>KOG3801 consensus Uncharacterized conserved protein BCN92 [RNA processing and modification]
Probab=99.67 E-value=4.8e-16 Score=104.68 Aligned_cols=78 Identities=21% Similarity=0.335 Sum_probs=69.4
Q ss_pred hhHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHhcceeeecCCCceEE
Q 035983 2 AGEAMIAYRSLIRATRKSFAGDTVMLKESAKEIRKRFEESRHVTSPTEIQRLLDEAREASRFISTMIVQAKLNERGGYEV 81 (109)
Q Consensus 2 ra~aL~lYR~LlRa~r~~F~gD~~~l~aar~~iR~~F~~n~~~~d~~~I~e~i~~a~ev~~~Lr~nVVQg~~~~~~~y~l 81 (109)
|.+++++||.+||++++.++.+++ +|+.++||+.|++|++++||.+|+++++.|+..+++|++++|.|++++.++--+
T Consensus 6 r~qvlsLyr~~lr~s~qfp~YNyR--eY~~RrtRD~Fr~Nkn~~Dp~e~~~l~~eakk~LevikRQ~ii~~lY~~~klIv 83 (94)
T KOG3801|consen 6 RRQVLSLYRNLLRESKQFPQYNYR--EYFQRRTRDTFRANKNVCDPAEIKKLYKEAKKQLEVIKRQSIIGQLYPKDKLIV 83 (94)
T ss_pred HHHHHHHHHHHHHHHhhCCcccHH--HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcceee
Confidence 469999999999999994445665 799999999999999999999999999999999999999999999997554433
No 2
>PF13232 Complex1_LYR_1: Complex1_LYR-like
Probab=99.60 E-value=6.2e-15 Score=91.56 Aligned_cols=60 Identities=28% Similarity=0.463 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 035983 4 EAMIAYRSLIRATRKSFAGDTVMLKESAKEIRKRFEESRHVTSPTEIQRLLDEAREASRFIS 65 (109)
Q Consensus 4 ~aL~lYR~LlRa~r~~F~gD~~~l~aar~~iR~~F~~n~~~~d~~~I~e~i~~a~ev~~~Lr 65 (109)
++|++||+|||+++.+|.++.+ .+++.+||++|+.|++++||++|+++++.|.+.+.+|+
T Consensus 2 ~vL~LYR~lLR~~~~~~~~~~r--~~~~~~ir~~Fr~~~~~td~~~i~~~l~~~~~~L~~l~ 61 (61)
T PF13232_consen 2 QVLSLYRQLLREASKFPDYNFR--SYFRRRIRDRFRRNKNVTDPEKIAKLLKEGRKELELLR 61 (61)
T ss_pred hHHHHHHHHHHHhhhcCCcchH--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 6899999999999998877877 79999999999999999999999999999999999874
No 3
>PF05347 Complex1_LYR: Complex 1 protein (LYR family); InterPro: IPR008011 This family of short proteins includes proteins from the NADH-ubiquinone oxidoreductase complex I. The family includes the B14 subunit from bovine NADH-ubiquinone oxidoreductase B14 subunit Q02366 from SWISSPROT, and the B22 subunit from the human enzyme Q9Y6M9 from SWISSPROT. The family has been named LYR after a highly conserved tripeptide motif close to the N terminus of these proteins. Members of this family also found in yeast which do contain this complex. In these organisms they are believed to be be required for iron-sulphur custer biogenesis.
Probab=99.47 E-value=2.8e-13 Score=82.92 Aligned_cols=57 Identities=33% Similarity=0.559 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Q 035983 4 EAMIAYRSLIRATRKSFAGDTVMLKESAKEIRKRFEESRHVTSPTEIQRLLDEAREASR 62 (109)
Q Consensus 4 ~aL~lYR~LlRa~r~~F~gD~~~l~aar~~iR~~F~~n~~~~d~~~I~e~i~~a~ev~~ 62 (109)
+||++||++||+++. |+++. ...+++..||++|++|++++||..|+.+++.|.+-++
T Consensus 2 ~vl~LYR~lLR~~~~-~~~~~-~r~~~~~~iR~~Fr~n~~~~d~~~I~~~l~~g~~~l~ 58 (59)
T PF05347_consen 2 RVLSLYRQLLRAARS-FPDDS-EREYIRAEIRQEFRKNRNETDPEKIEELLKKGEEELE 58 (59)
T ss_pred hHHHHHHHHHHHHHH-cCCcc-hHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhc
Confidence 689999999999976 66644 5689999999999999999999999999999988764
No 4
>KOG3426 consensus NADH:ubiquinone oxidoreductase, NDUFA6/B14 subunit [Energy production and conversion]
Probab=97.68 E-value=0.00011 Score=51.85 Aligned_cols=68 Identities=24% Similarity=0.302 Sum_probs=54.6
Q ss_pred hhHHHHHHHHHHHHHhhcCCCCHH----HHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHhcce
Q 035983 2 AGEAMIAYRSLIRATRKSFAGDTV----MLKESAKEIRKRFEESRHVTSPTEIQRLLDEAREASRFISTMIVQ 70 (109)
Q Consensus 2 ra~aL~lYR~LlRa~r~~F~gD~~----~l~aar~~iR~~F~~n~~~~d~~~I~e~i~~a~ev~~~Lr~nVVQ 70 (109)
|.+||.+||..-|..=. |-.|+. ++...|..||++|.+|.++|||..|+-||-++.+-++-+...--|
T Consensus 23 Rrrvl~~yra~~R~iP~-~~~dy~L~dm~~~~~R~~ir~qf~kn~hvTD~rViDlLV~kg~~elkeiv~~~kq 94 (124)
T KOG3426|consen 23 RRRVLDLYRAWYRSIPT-IVDDYNLQDMTVSQLRDKIREQFRKNAHVTDPRVIDLLVIKGMEELKEIVDHWKQ 94 (124)
T ss_pred HHHHHHHHHHHHHhcCh-HHHhcCCcccCHHHHHHHHHHHHHhcCCcCCchhhhHHHHhhHHHHHHHHHHHhC
Confidence 45899999999998855 223333 478999999999999999999999999998888877776654433
No 5
>KOG4620 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.00031 Score=46.01 Aligned_cols=61 Identities=21% Similarity=0.340 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHHHHHHHHH
Q 035983 3 GEAMIAYRSLIRATRKSFAGDTVMLKESAKEIRKRFEESRHVT--SPTEIQRLLDEAREASRFIST 66 (109)
Q Consensus 3 a~aL~lYR~LlRa~r~~F~gD~~~l~aar~~iR~~F~~n~~~~--d~~~I~e~i~~a~ev~~~Lr~ 66 (109)
.+||.+||.+|||++--+ +.+. ...-.-|+++|++|++++ |--.|+.++.-++.-.+.+.+
T Consensus 9 rqVlhlYR~~lraa~~Kp-~~~~--~~~m~fvh~EFrk~~~lpr~Df~~IEhLlRvG~rq~~~~s~ 71 (80)
T KOG4620|consen 9 RQVLHLYRDLLRAARGKP-GAEA--RRWMAFVHAEFRKHAGLPRSDFLRIEHLLRVGRRQLQLLSS 71 (80)
T ss_pred HHHHHHHHHHHHHhcCCC-chHH--HHHHHHHHHHHHHhcCCcHhHHHHHHHHHHHhHHHHHHhcC
Confidence 389999999999999744 3222 234566999999999986 556899999998887776653
No 6
>PF13233 Complex1_LYR_2: Complex1_LYR-like
Probab=97.62 E-value=0.00036 Score=46.85 Aligned_cols=64 Identities=20% Similarity=0.314 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhhcCCCCHHH------HHHHHHHH----HHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHhcc
Q 035983 5 AMIAYRSLIRATRKSFAGDTVM------LKESAKEI----RKRFEESRHVTSPTEIQRLLDEAREASRFISTMIV 69 (109)
Q Consensus 5 aL~lYR~LlRa~r~~F~gD~~~------l~aar~~i----R~~F~~n~~~~d~~~I~e~i~~a~ev~~~Lr~nVV 69 (109)
|+++||+|||+-+... ....+ .......| +++|+.+.+.+++......+.++.+.+.||..+-.
T Consensus 1 V~~lYR~lLRel~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~ef~~~~~~~~~~~~~~~~~~~~~y~~~L~~qr~ 74 (104)
T PF13233_consen 1 VLSLYRSLLRELRRYP-RRSKIHQLKAPRSPGDQYVLEQARAEFRRHKSANDEEEAQEFLQEWENYATFLKNQRE 74 (104)
T ss_pred ChHHHHHHHHHHHhhc-chhhhhhhhchhHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999732 11110 13456667 99999999998888999999999999999997764
No 7
>KOG4100 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.00 E-value=0.054 Score=38.34 Aligned_cols=74 Identities=18% Similarity=0.298 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHhcceeeecCCCceEEee
Q 035983 4 EAMIAYRSLIRATRKSFAGDTVMLKESAKEIRKRFEESRHVTSPTEIQRLLDEAREASRFISTMIVQAKLNERGGYEVKP 83 (109)
Q Consensus 4 ~aL~lYR~LlRa~r~~F~gD~~~l~aar~~iR~~F~~n~~~~d~~~I~e~i~~a~ev~~~Lr~nVVQg~~~~~~~y~l~i 83 (109)
.+..+||.+||.-+-.+ ++.++| --+-+|++|+-++++ .|..++--+..+..-+..|..++-| .|+|+=.+
T Consensus 11 rvrlLYkriLrlHr~lp-~~~R~l--GD~YVkdEFrrHk~v-np~~~~~FlteW~~Ya~~l~qql~~-----~g~~K~~~ 81 (125)
T KOG4100|consen 11 RVRLLYKRILRLHRGLP-AELRAL--GDQYVKDEFRRHKTV-NPLEAQGFLTEWERYAVALSQQLSS-----AGKWKGEI 81 (125)
T ss_pred hHHHHHHHHHHHHccCC-hHHHHH--HHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHHHHHHHhhh-----cCcccccc
Confidence 35569999999999855 566655 456689999999999 8899999999999999999987764 34554444
Q ss_pred ccC
Q 035983 84 TQE 86 (109)
Q Consensus 84 ~~~ 86 (109)
-++
T Consensus 82 g~~ 84 (125)
T KOG4100|consen 82 GSD 84 (125)
T ss_pred ccc
Confidence 443
No 8
>KOG3466 consensus NADH:ubiquinone oxidoreductase, NDUFB9/B22 subunit [Energy production and conversion]
Probab=95.69 E-value=0.044 Score=40.04 Aligned_cols=57 Identities=21% Similarity=0.277 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Q 035983 3 GEAMIAYRSLIRATRKSFAGDTVMLKESAKEIRKRFEESRHVTSPTEIQRLLDEAREAS 61 (109)
Q Consensus 3 a~aL~lYR~LlRa~r~~F~gD~~~l~aar~~iR~~F~~n~~~~d~~~I~e~i~~a~ev~ 61 (109)
.+|+.||+..||...... +-..+..+..-.||..|.+|++ .|-.++..||++|.+-.
T Consensus 14 qkV~rLYKRaLR~lenWy-~~rn~yRy~ac~~RARFden~~-kD~~k~~~LLa~ge~E~ 70 (157)
T KOG3466|consen 14 QKVRRLYKRALRDLENWY-VHRNIYRYQACIIRARFDENDE-KDVDKAIRLLAEGEREL 70 (157)
T ss_pred HHHHHHHHHHHHHHHHHh-hcchHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHHHH
Confidence 478999999999998855 4344467888889999999999 78888899999987643
No 9
>PF04716 ETC_C1_NDUFA5: ETC complex I subunit conserved region; InterPro: IPR006806 This is a family of eukaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC) (1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 29.9 kDa protein. The conserved region is found at the N terminus of the member proteins [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022904 respiratory electron transport chain, 0005743 mitochondrial inner membrane
Probab=68.13 E-value=25 Score=21.53 Aligned_cols=50 Identities=12% Similarity=0.217 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 035983 4 EAMIAYRSLIRATRKSFAGDTVMLKESAKEIRKRFEESRHVTSPTEIQRLL 54 (109)
Q Consensus 4 ~aL~lYR~LlRa~r~~F~gD~~~l~aar~~iR~~F~~n~~~~d~~~I~e~i 54 (109)
.-..+|.+.|++-.+ |+.|..=+.+.-.-++..+.--....|.++|++.|
T Consensus 6 ~L~~lY~~~L~~L~~-~P~~a~YR~~tE~it~~Rl~iv~~~~d~~~iE~~i 55 (57)
T PF04716_consen 6 ALISLYNKTLKALKK-IPEDAAYRQYTEAITKHRLKIVEEEEDIEKIEKKI 55 (57)
T ss_pred HHHHHHHHHHHHHHh-CCCccHHHHHHHHHHHHHHHHHHccccHHHHHHHh
Confidence 457899999999997 55665444666666676666555677888888765
No 10
>PF12960 DUF3849: Protein of unknown function (DUF3849); InterPro: IPR024383 This domain is found in a family of uncharacterised proteins found by clustering human gut metagenomic sequences [].
Probab=65.48 E-value=39 Score=24.29 Aligned_cols=54 Identities=15% Similarity=0.322 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHH-HHHHHHHHHHHhcceeeecCCCceE
Q 035983 24 TVMLKESAKEIRKRFEESRHVTSPTEIQRLLD-EAREASRFISTMIVQAKLNERGGYE 80 (109)
Q Consensus 24 ~~~l~aar~~iR~~F~~n~~~~d~~~I~e~i~-~a~ev~~~Lr~nVVQg~~~~~~~y~ 80 (109)
..-..+.-..|++.|..+ .+. ++.+++.|+ .|-+-..|+.-|.||.... ||+|.
T Consensus 27 ~~Ck~aIE~aI~~~~~~~-~L~-~~a~~~vie~fG~eR~~~VLAnTIq~kd~-DGRfS 81 (133)
T PF12960_consen 27 IACKEAIEQAIREHFDGN-RLD-PDAVKEVIEKFGYERVAYVLANTIQQKDW-DGRFS 81 (133)
T ss_pred HHHHHHHHHHHHHHcCCC-cCC-HHHHHHHHHHHHHHHHHHHHHHHHHhccc-cccCC
Confidence 444467778899999977 554 677777774 6899999999999998844 66653
No 11
>COG5612 Predicted integral membrane protein [Function unknown]
Probab=64.43 E-value=52 Score=23.89 Aligned_cols=64 Identities=17% Similarity=0.215 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhc-CCCCCHHHHHHHHHHHHHHHHHHHHhccee
Q 035983 5 AMIAYRSLIRATRKSFAGDTVMLKESAKEIRKRFEES-RHVTSPTEIQRLLDEAREASRFISTMIVQA 71 (109)
Q Consensus 5 aL~lYR~LlRa~r~~F~gD~~~l~aar~~iR~~F~~n-~~~~d~~~I~e~i~~a~ev~~~Lr~nVVQg 71 (109)
-..+||++||++++ .+.++...+++.=|+.---- ...-|...+...++-+++...-.|.+|-|.
T Consensus 51 ~R~~fRqaLr~arq---~~rei~~~arqaRreAa~ll~~p~lDtaals~aLerAR~ae~~vR~~vE~~ 115 (148)
T COG5612 51 NRRGFRQALRAARQ---KNREITQRARQARREAAALLASPGLDTAALSRALERARDAEIQVRGNVETA 115 (148)
T ss_pred HHHHHHHHHHHHHh---hhhHhHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 35789999999997 23444455555544443322 234477889999999998888888777554
No 12
>PRK06444 prephenate dehydrogenase; Provisional
Probab=63.45 E-value=18 Score=27.10 Aligned_cols=44 Identities=7% Similarity=0.080 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Q 035983 7 IAYRSLIRATRKSFAGDTVMLKESAKEIRKRFEESRHVTSPTEIQRLLDEAREA 60 (109)
Q Consensus 7 ~lYR~LlRa~r~~F~gD~~~l~aar~~iR~~F~~n~~~~d~~~I~e~i~~a~ev 60 (109)
..||.++|-++.+|.+|+.+ -++=|..|+.. ..+++..+-.+++
T Consensus 152 ~~fr~l~ria~~~~~~~p~l-------w~dI~~~N~~a---~~~~~~~~~~~~~ 195 (197)
T PRK06444 152 GSFDKLLEVSEIKEKENWEV-------FNDTIIYNPYT---NVINDLIERLNKV 195 (197)
T ss_pred ccHHHHHHHHHHhccCCHHH-------HHHHHHHCchH---HHHHHHHHHHhhc
Confidence 36999999999999999987 46778888874 4455555544443
No 13
>PLN02256 arogenate dehydrogenase
Probab=60.57 E-value=23 Score=28.17 Aligned_cols=43 Identities=19% Similarity=0.221 Sum_probs=29.1
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 035983 8 AYRSLIRATRKSFAGDTVMLKESAKEIRKRFEESRHVTSPTEIQRLLDEARE 59 (109)
Q Consensus 8 lYR~LlRa~r~~F~gD~~~l~aar~~iR~~F~~n~~~~d~~~I~e~i~~a~e 59 (109)
.||.+.|-+.++|.+|+.+. ++=|..|+... +.|++.++...+
T Consensus 239 gfrd~tria~r~~~~~p~lw-------~dI~~~N~~~~--~~i~~~~~~l~~ 281 (304)
T PLN02256 239 GYETLLRLVENTSSDSFDLY-------YGLFMYNPNAT--EELERLELAFDS 281 (304)
T ss_pred cHHHHHHHHHhhcCCCHHHH-------HHHHHHChHHH--HHHHHHHHHHHH
Confidence 49999999999999999874 45566666543 344444443333
No 14
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=54.09 E-value=50 Score=21.07 Aligned_cols=41 Identities=22% Similarity=0.319 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHhcce
Q 035983 28 KESAKEIRKRFEESRHVTSPTEIQRLLDEAREASRFISTMIVQ 70 (109)
Q Consensus 28 ~aar~~iR~~F~~n~~~~d~~~I~e~i~~a~ev~~~Lr~nVVQ 70 (109)
...+.+++..+. +...|+.+|..+++...+...-+...++.
T Consensus 69 ~~~r~~l~~ll~--~~~~D~~~i~a~~~~~~~~~~~l~~~~~~ 109 (125)
T PF13801_consen 69 RAARQELRALLA--APPPDEAAIEALLEEIREAQAELRQERLE 109 (125)
T ss_dssp HHHHHHHHHHHC--CSSS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555553 45679999999998888877776665543
No 15
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=49.21 E-value=5.4 Score=28.17 Aligned_cols=49 Identities=29% Similarity=0.329 Sum_probs=31.5
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Q 035983 11 SLIRATRKSFAGDTVMLKESAKEIRKRFEESRHVTSPTEIQRLLDEAREASR 62 (109)
Q Consensus 11 ~LlRa~r~~F~gD~~~l~aar~~iR~~F~~n~~~~d~~~I~e~i~~a~ev~~ 62 (109)
.|+-.+.+ |=.|+.+..+. ..=|.+|.+.|.+++ ++|++++..+.....
T Consensus 4 ~li~~A~~-FL~~p~V~~sp-~~~k~~FL~sKGLt~-~EI~~al~~a~~~~~ 52 (136)
T PF04695_consen 4 DLIEQAVK-FLQDPKVRNSP-LEKKIAFLESKGLTE-EEIDEALGRAGSPPA 52 (136)
T ss_dssp HHHHHHHH-HHCTTTCCCS--HHHHHHHHHHCT--H-HHHHHHHHHHT--S-
T ss_pred HHHHHHHH-HhCCcccccCC-HHHHHHHHHcCCCCH-HHHHHHHHhcCCccc
Confidence 35556665 66777766555 446889999999985 579999998877653
No 16
>PF08025 Antimicrobial_3: Spider antimicrobial peptide; InterPro: IPR012522 This family includes antimicrobial peptides isolated from the crude venom of the wolf spider Oxyopes kitabensis (Wolf spider). These peptides, known as oxyopinins, are the largest linear cationic amphipathic peptides chemically characterised and exhibit disrupting activities towards biological membranes [].; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0005576 extracellular region
Probab=49.02 E-value=24 Score=19.82 Aligned_cols=32 Identities=25% Similarity=0.560 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhcCCCC
Q 035983 6 MIAYRSLIRATRKSFAGDTVMLKESAKEIRKRFEESRHVT 45 (109)
Q Consensus 6 L~lYR~LlRa~r~~F~gD~~~l~aar~~iR~~F~~n~~~~ 45 (109)
++.|-.+||+..++|.|= -++|.+|.+..++.
T Consensus 3 ~s~~~kilrsiak~fkgv--------gk~rkqfk~asdld 34 (37)
T PF08025_consen 3 FSGFSKILRSIAKFFKGV--------GKVRKQFKEASDLD 34 (37)
T ss_pred ccHHHHHHHHHHHHHHHH--------HHHHHHHhHHhhcc
Confidence 456778999999989653 34788898776653
No 17
>PF06041 DUF924: Bacterial protein of unknown function (DUF924); InterPro: IPR010323 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 2I6H_B.
Probab=48.03 E-value=8 Score=28.85 Aligned_cols=30 Identities=27% Similarity=0.517 Sum_probs=26.7
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHh
Q 035983 10 RSLIRATRKSFAGDTVMLKESAKEIRKRFE 39 (109)
Q Consensus 10 R~LlRa~r~~F~gD~~~l~aar~~iR~~F~ 39 (109)
|++.|-+.++|.+|..++.-++.-|..++-
T Consensus 69 RnifRg~~~afa~D~~Al~la~~~i~~g~~ 98 (188)
T PF06041_consen 69 RNIFRGTPRAFAFDPLALALARRAIERGWD 98 (188)
T ss_dssp HHHSTTSGGGCTTHHHHHHHHHHHHHTTHH
T ss_pred HHhcCCCchhccccHHHHHHHHHHHHcCCc
Confidence 788888999999999999999999987775
No 18
>PRK08868 flagellar protein FlaG; Provisional
Probab=47.74 E-value=79 Score=23.05 Aligned_cols=65 Identities=22% Similarity=0.273 Sum_probs=49.1
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHHHhcceeeecCCCceEEeeccCCCC-CcccCCChhhhhhc
Q 035983 39 EESRHVTSPTEIQRLLDEAREASRFISTMIVQAKLNERGGYEVKPTQEHAG-ATLDIPSEEILRKS 103 (109)
Q Consensus 39 ~~n~~~~d~~~I~e~i~~a~ev~~~Lr~nVVQg~~~~~~~y~l~i~~~h~~-~~~elgdn~~ik~~ 103 (109)
.+++...++++++++++..++.+..+.+++-=....+.|++-+++-....+ ..-|+|+.+.++=.
T Consensus 62 ae~~~e~~~eel~~aVeklNe~~~~~n~~L~F~vdeetgr~VVkViD~~T~EVIRQIP~Ee~L~la 127 (144)
T PRK08868 62 AEQRQELNREELEKMVEQMNEFVKSINKGLSFRVDEESGRDVVTIYEASTGDIIRQIPDEEMLEVL 127 (144)
T ss_pred hhhhcccCHHHHHHHHHHHHHHHHhhcCceEEEEecCCCCEEEEEEECCCCceeeeCCCHHHHHHH
Confidence 345666788899999999999999998877666667889998988655443 33358888776543
No 19
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=42.02 E-value=31 Score=17.76 Aligned_cols=20 Identities=15% Similarity=0.220 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHhhcCCCC
Q 035983 4 EAMIAYRSLIRATRKSFAGD 23 (109)
Q Consensus 4 ~aL~lYR~LlRa~r~~F~gD 23 (109)
+|+.+|+..+...+.+|..|
T Consensus 20 ~A~~~~~~al~~~~~~~G~~ 39 (42)
T PF13374_consen 20 EALELLEEALEIRERLLGPD 39 (42)
T ss_dssp HHHHHHHHHHHHH-------
T ss_pred hhhHHHHHHHHHHHHHhccc
Confidence 67888888888888887554
No 20
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=41.87 E-value=23 Score=21.83 Aligned_cols=24 Identities=25% Similarity=0.623 Sum_probs=19.6
Q ss_pred HHHHHHHHHhcceeeec-CCCceEE
Q 035983 58 REASRFISTMIVQAKLN-ERGGYEV 81 (109)
Q Consensus 58 ~ev~~~Lr~nVVQg~~~-~~~~y~l 81 (109)
.|...||-+.|-+|++. ..|.|+|
T Consensus 36 ~eL~~fL~~lv~e~~L~~~~G~YkL 60 (60)
T PF08672_consen 36 EELQEFLDRLVEEGKLECSGGSYKL 60 (60)
T ss_dssp HHHHHHHHHHHHTTSEE--TTEEEE
T ss_pred HHHHHHHHHHHHCCcEEecCCEEeC
Confidence 56778999999999988 8899986
No 21
>COG5040 BMH1 14-3-3 family protein [Signal transduction mechanisms]
Probab=40.83 E-value=1.5e+02 Score=23.25 Aligned_cols=37 Identities=11% Similarity=0.094 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHhcceeeec-CCCceEEeeccCC
Q 035983 51 QRLLDEAREASRFISTMIVQAKLN-ERGGYEVKPTQEH 87 (109)
Q Consensus 51 ~e~i~~a~ev~~~Lr~nVVQg~~~-~~~~y~l~i~~~h 87 (109)
+++.....+++.+|.++++-+..+ +...|-++.+.|.
T Consensus 92 ~EL~~icddiL~vl~~hlipaa~~~EskvFyyKMKGDY 129 (268)
T COG5040 92 TELTKICDDILSVLEKHLIPAATTGESKVFYYKMKGDY 129 (268)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccceEEEEeecchH
Confidence 467778899999999999988877 5567777777663
No 22
>PF03732 Retrotrans_gag: Retrotransposon gag protein ; InterPro: IPR005162 Transposable elements (TEs) promote various chromosomal rearrangements more efficiently, and often more specifically, than other cellular processes. Retrotransposons are structurally similar to retroviruses and are bounded by long terminal repeats. This entry represents eukaryotic Gag or capsid-related retrotranspon-related proteins. There is a central motif QGXXEXXXXXFXXLXXH that is common to Retroviridae gag-proteins, but is poorly conserved.
Probab=38.73 E-value=57 Score=19.92 Aligned_cols=36 Identities=28% Similarity=0.244 Sum_probs=25.5
Q ss_pred ChhHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhh
Q 035983 1 MAGEAMIAYRSLIRATRKSFAGDTVMLKESAKEIRKRFEE 40 (109)
Q Consensus 1 Mra~aL~lYR~LlRa~r~~F~gD~~~l~aar~~iR~~F~~ 40 (109)
|++.|...|+++....... ..+. ......++..|..
T Consensus 7 L~g~A~~w~~~~~~~~~~~-~~~W---~~~~~~~~~~f~~ 42 (96)
T PF03732_consen 7 LKGPARQWYRNLRPNEIRD-FITW---EEFKDAFRKRFFP 42 (96)
T ss_pred ccCHHHHHHHHhHhcCCCC-CCCH---HHHHHHHHHHHhh
Confidence 4678889999999888763 1222 4677778888875
No 23
>PF03564 DUF1759: Protein of unknown function (DUF1759); InterPro: IPR005312 This is a small family of proteins of unknown function.
Probab=37.98 E-value=1.3e+02 Score=20.45 Aligned_cols=44 Identities=14% Similarity=0.176 Sum_probs=34.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Q 035983 20 FAGDTVMLKESAKEIRKRFEESRHVTSPTEIQRLLDEAREASRF 63 (109)
Q Consensus 20 F~gD~~~l~aar~~iR~~F~~n~~~~d~~~I~e~i~~a~ev~~~ 63 (109)
|.||+.-...++...+.-..+|.+.+|-.++..|.+....-+.-
T Consensus 1 F~G~~~~~~~F~~~F~~~v~~n~~~~d~~K~~~L~~~L~G~A~~ 44 (145)
T PF03564_consen 1 FDGDPSEWPEFIDQFDSLVHENPDLSDIEKLNYLRSCLKGEAKE 44 (145)
T ss_pred CCCCHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcchHHH
Confidence 88999888888888888888889999888888777766655443
No 24
>PRK11032 hypothetical protein; Provisional
Probab=37.40 E-value=1.1e+02 Score=22.63 Aligned_cols=51 Identities=16% Similarity=0.269 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 035983 4 EAMIAYRSLIRATRKSFAGDTVMLKESAKEIRKRFEESRHVTSPTEIQRLLD 55 (109)
Q Consensus 4 ~aL~lYR~LlRa~r~~F~gD~~~l~aar~~iR~~F~~n~~~~d~~~I~e~i~ 55 (109)
..+++|..||-.-+..+.++...+..+....++...+..++| .++++..-.
T Consensus 3 k~~~~Y~~ll~~v~~~l~~~~~~l~~~ve~a~~~~~~~~elT-~dEl~lv~~ 53 (160)
T PRK11032 3 KVAQYYRELVASLTERLRNGERDIDALVESARKRVDAAGELT-RDEVDLITR 53 (160)
T ss_pred hHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHH
Confidence 678999999988888898888888888777777666666664 444443333
No 25
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=36.24 E-value=80 Score=19.19 Aligned_cols=29 Identities=21% Similarity=0.252 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 035983 5 AMIAYRSLIRATRKSFAGDTVMLKESAKEI 34 (109)
Q Consensus 5 aL~lYR~LlRa~r~~F~gD~~~l~aar~~i 34 (109)
+..-|=+|-|-++. |..|..+|-++|.+.
T Consensus 15 ~~gy~~hmkrycra-frqdrdallear~kl 43 (54)
T PF13260_consen 15 VVGYFCHMKRYCRA-FRQDRDALLEARNKL 43 (54)
T ss_pred HHHHHHHHHHHHHH-HhhhHHHHHHHHHHH
Confidence 34556777788885 999999888888764
No 26
>PF03735 ENT: ENT domain; InterPro: IPR005491 This entry represents a protein regulator which is able to repress transcription, possibly via its interaction with a multi protein chromatin re-modeling complex that modifies the chromatin. Its interaction with BRCA2 suggests that it may play a central role in the DNA repair function of BRCA2 []. ; PDB: 1UZ3_B 1UTU_B 2FMM_E.
Probab=35.71 E-value=1.2e+02 Score=19.45 Aligned_cols=41 Identities=20% Similarity=0.342 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhcCCCCCHHHHH
Q 035983 6 MIAYRSLIRATRKSFAGDTVMLKESAKEIRKRFEESRHVTSPTEIQ 51 (109)
Q Consensus 6 L~lYR~LlRa~r~~F~gD~~~l~aar~~iR~~F~~n~~~~d~~~I~ 51 (109)
+.||..+|||-+. +|+ |..-+..+=++.+.--+.+|.+...
T Consensus 10 ~eAY~svl~Af~A--qg~---lsweke~lLt~Lr~~L~IS~e~H~~ 50 (73)
T PF03735_consen 10 LEAYSSVLRAFRA--QGP---LSWEKEKLLTELRKELNISDEEHRE 50 (73)
T ss_dssp HHHHHHHHHHHHH--HSS-----HHHHHHHHHHHHHTT--HHHHHH
T ss_pred HHHHHHHHHHHHH--cCC---CCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 6799999999886 677 5777877777777777887776544
No 27
>PF02417 Chromate_transp: Chromate transporter; InterPro: IPR003370 This entry represents chromate transporters (CHR) [, ]. These proteins reduce chromate accumulation and are essential for chromate resistance. They are composed of one or two copies of this region. The short-chain CHR proteins form heterodimer transporters which efflux chromate ions from the cytoplasm, while the long chain CHR proteins appear to have arisen from a gene fusion event of two short chain transporters[].; GO: 0015109 chromate transmembrane transporter activity, 0015703 chromate transport
Probab=35.34 E-value=1.7e+02 Score=20.94 Aligned_cols=49 Identities=22% Similarity=0.224 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 035983 6 MIAYRSLIRATRKSFAGDTVMLKESAKEIRKRFEESRHVTSPTEIQRLLDEAR 58 (109)
Q Consensus 6 L~lYR~LlRa~r~~F~gD~~~l~aar~~iR~~F~~n~~~~d~~~I~e~i~~a~ 58 (109)
+.+|...+|..-.+|.|-+- .-.-++++|.+++.--++++..+.+..++
T Consensus 3 ~~Lf~~f~~ig~~~FGGg~a----~i~~~~~~~V~~~~wlt~~~f~~~~al~q 51 (169)
T PF02417_consen 3 LELFWSFFKIGLFSFGGGYA----IIPLIQREFVERRGWLTEEEFLEGLALAQ 51 (169)
T ss_pred HHHHHHHHHHHHhhcCCHHH----HHHHHHHHHhHccCCCCHHHHHHHHHHHH
Confidence 67899999999999988664 44568888998888788888888877664
No 28
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=34.75 E-value=1.4e+02 Score=23.51 Aligned_cols=57 Identities=19% Similarity=0.184 Sum_probs=41.4
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHH--HhhcCCCCCHHHHHHHHHHHHHHHHHHHHhc
Q 035983 10 RSLIRATRKSFAGDTVMLKESAKEIRKR--FEESRHVTSPTEIQRLLDEAREASRFISTMI 68 (109)
Q Consensus 10 R~LlRa~r~~F~gD~~~l~aar~~iR~~--F~~n~~~~d~~~I~e~i~~a~ev~~~Lr~nV 68 (109)
=-++.++|+ + -|.++......++-.. -.+.+.--|..+|...+...+|..+|+..++
T Consensus 58 ~~~igaaRR-~-~DTRvf~rIy~~la~~vi~~qr~~~~~~S~i~ARv~lsRE~VdFfE~~l 116 (237)
T PF13748_consen 58 MWAIGAARR-I-YDTRVFSRIYAELAVPVILSQRQQGLSVSTIAARVALSREFVDFFEQHL 116 (237)
T ss_pred HHHHhhhhH-H-HhhHHHHHHHHHHhHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHh
Confidence 345667777 3 5788776666666666 3444455567889999999999999998876
No 29
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=34.40 E-value=43 Score=22.21 Aligned_cols=58 Identities=24% Similarity=0.311 Sum_probs=39.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcceeeecCCCceEEeeccCCCCCc-ccCCChhhhh
Q 035983 44 VTSPTEIQRLLDEAREASRFISTMIVQAKLNERGGYEVKPTQEHAGAT-LDIPSEEILR 101 (109)
Q Consensus 44 ~~d~~~I~e~i~~a~ev~~~Lr~nVVQg~~~~~~~y~l~i~~~h~~~~-~elgdn~~ik 101 (109)
..+++.++++++..++.+..+.+++-=....+.|.|-+++-..-.|-. =|+|..+.++
T Consensus 33 ~~~~e~l~~~v~~ln~~~~~~~~~l~F~vde~~~~~vVkViD~~T~eVIRqIP~Ee~l~ 91 (107)
T PF03646_consen 33 EPSKEELEEAVEKLNEFLQALNTSLRFSVDEESGRVVVKVIDKETGEVIRQIPPEELLD 91 (107)
T ss_dssp ---HHHHHHHHHHHHHHHTTSS--EEEEEEEETTEEEEEEEETTT-SEEEEE-HHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCceEEEEecCCCcEEEEEEECCCCcEEEeCCcHHHHH
Confidence 457789999999999999998888777777788999999866644332 3467666654
No 30
>COG1329 Transcriptional regulators, similar to M. xanthus CarD [Transcription]
Probab=34.28 E-value=1.4e+02 Score=22.38 Aligned_cols=44 Identities=9% Similarity=0.141 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHHHhhcCCCCCHH
Q 035983 5 AMIAYRSLIRATRK--SFAGDTVMLKESAKEIRKRFEESRHVTSPT 48 (109)
Q Consensus 5 aL~lYR~LlRa~r~--~F~gD~~~l~aar~~iR~~F~~n~~~~d~~ 48 (109)
+-.++|.|+|..+. ..-++.++|+.|++.+-.+..--.+.++++
T Consensus 106 ~AevvrdL~r~~~qr~l~~~Er~ll~~A~~~l~~Ela~~e~i~~~e 151 (166)
T COG1329 106 IAEVVRDLYRRDKQRELSYSERRLLEKALQILAGELALAEGISEEE 151 (166)
T ss_pred HHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 45689999999866 344588999999999999988666655443
No 31
>PRK08452 flagellar protein FlaG; Provisional
Probab=34.21 E-value=1.7e+02 Score=20.66 Aligned_cols=59 Identities=17% Similarity=0.200 Sum_probs=44.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcceeeecCCCceEEeeccCCC-CCcccCCChhhhhh
Q 035983 44 VTSPTEIQRLLDEAREASRFISTMIVQAKLNERGGYEVKPTQEHA-GATLDIPSEEILRK 102 (109)
Q Consensus 44 ~~d~~~I~e~i~~a~ev~~~Lr~nVVQg~~~~~~~y~l~i~~~h~-~~~~elgdn~~ik~ 102 (109)
+...++++++++..++.+..+.+++-=....+.+.+-+++-.... ...-|+|+.+.++=
T Consensus 49 e~~~e~l~~~ve~lN~~~~~~~~~L~F~~de~~~~~vVkVvD~~T~eVIRqIP~Ee~L~l 108 (124)
T PRK08452 49 EQLKKKLEELTEKLNEEMKRLDTNIRFGYNDKIKGLVVSVKEANGGKVIREIPSKEAIEL 108 (124)
T ss_pred hHHHHHHHHHHHHHHHHHHhhCCceEEEEcCCCCcEEEEEEECCCCceeeeCCCHHHHHH
Confidence 446678999999999999999887766666677889888854433 34446888877653
No 32
>PF03799 FtsQ: Cell division protein FtsQ; InterPro: IPR005548 FtsQ is one of several cell division proteins. FtsQ interacts with other Fts proteins, reviewed in []. The precise function of FtsQ is unknown.; PDB: 2VH1_B 2VH2_B 2ALJ_A 1YR1_A.
Probab=32.72 E-value=1.3e+02 Score=19.07 Aligned_cols=48 Identities=15% Similarity=0.317 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcceeeecCCCceEEeeccCCCCCcccCCChhh
Q 035983 49 EIQRLLDEAREASRFISTMIVQAKLNERGGYEVKPTQEHAGATLDIPSEEI 99 (109)
Q Consensus 49 ~I~e~i~~a~ev~~~Lr~nVVQg~~~~~~~y~l~i~~~h~~~~~elgdn~~ 99 (109)
.+.+++.........++.+|..-...+.+.|.|.++ .|..+-+|+.+.
T Consensus 42 ~~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~l~l~---dg~~V~lg~~~~ 89 (117)
T PF03799_consen 42 DLLELLRELAALPPPLRSQISEISYDPRGSWTLYLD---DGVEVKLGRSDL 89 (117)
T ss_dssp HHHHHHHHHHHHHHHTTHS-SEEEEETTSCEEEE-S---SS-EEEEESSTH
T ss_pred HHHHHHHHHHHHHHHHhceeeEEEECCCCeEEEEEC---CCcEEEEcCcCH
Confidence 367888888888889999999999999999999994 455566888763
No 33
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=31.53 E-value=1.4e+02 Score=19.10 Aligned_cols=34 Identities=21% Similarity=0.422 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 035983 26 MLKESAKEIRKRFEESRHVTSPTEIQRLLDEARE 59 (109)
Q Consensus 26 ~l~aar~~iR~~F~~n~~~~d~~~I~e~i~~a~e 59 (109)
++..++.++++.|+..-.-..|+.|+++|..=-+
T Consensus 10 tFtEyKKrL~e~l~~k~P~at~~~l~~lve~Rsd 43 (68)
T PF09164_consen 10 TFTEYKKRLAERLRAKLPDATPTELKELVEKRSD 43 (68)
T ss_dssp -HHHHHHHHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhh
Confidence 3468899999999988888889999988876443
No 34
>COG2059 ChrA Chromate transport protein ChrA [Inorganic ion transport and metabolism]
Probab=31.42 E-value=2.3e+02 Score=21.39 Aligned_cols=53 Identities=15% Similarity=0.162 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 035983 2 AGEAMIAYRSLIRATRKSFAGDTVMLKESAKEIRKRFEESRHVTSPTEIQRLLDEAR 58 (109)
Q Consensus 2 ra~aL~lYR~LlRa~r~~F~gD~~~l~aar~~iR~~F~~n~~~~d~~~I~e~i~~a~ 58 (109)
+...+.+++..+|..-..|.|-+-. ---+|+++.+.+.--|+++..+.+..++
T Consensus 4 ~~~~~~lf~~flk~g~l~fGGg~a~----i~~~~~e~V~~r~Wis~~ef~~~laisq 56 (195)
T COG2059 4 LMTLLELFFLFLKLGLLGFGGGAAH----IPLMRREVVERRKWISEEEFADALAISQ 56 (195)
T ss_pred cchHHHHHHHHHHHHHhhcCcHHHH----HHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 3467889999999999999886644 4457778888878788888888887654
No 35
>PRK07738 flagellar protein FlaG; Provisional
Probab=31.04 E-value=1.9e+02 Score=20.26 Aligned_cols=58 Identities=17% Similarity=0.224 Sum_probs=44.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcceeeecCCCceEEeeccCCC-CCcccCCChhhhh
Q 035983 44 VTSPTEIQRLLDEAREASRFISTMIVQAKLNERGGYEVKPTQEHA-GATLDIPSEEILR 101 (109)
Q Consensus 44 ~~d~~~I~e~i~~a~ev~~~Lr~nVVQg~~~~~~~y~l~i~~~h~-~~~~elgdn~~ik 101 (109)
..++++++++++..++.+..+-+++-=....+.|.+-+++-.... ...-|+|..+.++
T Consensus 42 ~~s~eel~~aveklN~~l~~~~~~L~F~vdeet~~~vVkVvD~~T~EVIRQIPpEe~L~ 100 (117)
T PRK07738 42 EVSKEDLEEVVDGMNELLEPSQTSLKFELHEKLNEYYVQVVDERTNEVIREIPPKKLLD 100 (117)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCceEEEEecCCCcEEEEEEECCCCeeeeeCCCHHHHH
Confidence 446788999999999999999888777777788999998865533 2333577777665
No 36
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.65 E-value=88 Score=26.10 Aligned_cols=69 Identities=12% Similarity=0.155 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHHHHHHHHHhcce
Q 035983 2 AGEAMIAYRSLIRATRKSFAGDTVMLKESAKEIRKRFEESRHVT--SPTEIQRLLDEAREASRFISTMIVQ 70 (109)
Q Consensus 2 ra~aL~lYR~LlRa~r~~F~gD~~~l~aar~~iR~~F~~n~~~~--d~~~I~e~i~~a~ev~~~Lr~nVVQ 70 (109)
|+.+.++|+..+|.++..=-+...++.+...+..++...-...- -.+.++..+...+...++|.+.+--
T Consensus 208 rasvisa~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 208 RASVISAVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 67899999999999877544555566666666656555433311 1234555555566666666665543
No 37
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=30.63 E-value=71 Score=21.75 Aligned_cols=39 Identities=15% Similarity=0.279 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcceeeecCC------CceEEeec
Q 035983 46 SPTEIQRLLDEAREASRFISTMIVQAKLNER------GGYEVKPT 84 (109)
Q Consensus 46 d~~~I~e~i~~a~ev~~~Lr~nVVQg~~~~~------~~y~l~i~ 84 (109)
|..++...++++.|=++.||++++-=....+ ++|+....
T Consensus 2 ~~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g 46 (96)
T PF11365_consen 2 DSAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYG 46 (96)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5678899999999999999999985432211 36666543
No 38
>KOG3282 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.52 E-value=2e+02 Score=21.96 Aligned_cols=41 Identities=27% Similarity=0.512 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhcCC------CCCHHHHHHHHHHHHH
Q 035983 4 EAMIAYRSLIRATRKSFAGDTVMLKESAKEIRKRFEESRH------VTSPTEIQRLLDEARE 59 (109)
Q Consensus 4 ~aL~lYR~LlRa~r~~F~gD~~~l~aar~~iR~~F~~n~~------~~d~~~I~e~i~~a~e 59 (109)
.++.+|+++++ .|+.+| ...+.|-. ..+.+++.++++.|+.
T Consensus 100 Aalg~Y~~l~~-------~~p~ll--------~~We~~GQ~KIvvk~~~e~~l~~l~~~A~~ 146 (190)
T KOG3282|consen 100 AALGVYKHLMQ-------RDPELL--------RRWENCGQAKIVVKAESEEELMELQKDAKK 146 (190)
T ss_pred HHHHHHHHHHH-------hCHHHH--------HHHHHcCCceEEEEcCCHHHHHHHHHHHHH
Confidence 57999999998 567654 23444443 2466777777777764
No 39
>PF02478 Pneumo_phosprot: Pneumovirus phosphoprotein; InterPro: IPR003487 This family represents a phosphoprotein from Paramyxoviridae, which could be a putative RNA polymerase alpha subunit that may function in template binding [].; GO: 0003968 RNA-directed RNA polymerase activity
Probab=29.79 E-value=2.1e+02 Score=23.00 Aligned_cols=69 Identities=19% Similarity=0.247 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH-HHHHHHHHhcceeeecCCCceEEe
Q 035983 6 MIAYRSLIRATRKSFAGDTVMLKESAKEIRKRFEESRHVTSPTEIQRLLDEAR-EASRFISTMIVQAKLNERGGYEVK 82 (109)
Q Consensus 6 L~lYR~LlRa~r~~F~gD~~~l~aar~~iR~~F~~n~~~~d~~~I~e~i~~a~-ev~~~Lr~nVVQg~~~~~~~y~l~ 82 (109)
|+.---|||+-..+-.|-. +||.-||+.+..-+. +-|+..+..|+ .++++|+.---|--..++|..+|.
T Consensus 177 LSmIlGmL~TL~vAtAGPT----aARDgIRDAMiG~RE----ElI~~I~~Eak~kaae~m~eE~~qr~kig~gsvkLT 246 (279)
T PF02478_consen 177 LSMILGMLRTLNVATAGPT----AARDGIRDAMIGLRE----ELIEDIISEAKGKAAEMMREEESQRAKIGDGSVKLT 246 (279)
T ss_pred HHHHHHHHHHhhhcccCCc----hhhhhHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCceeec
Confidence 4455567777777766644 799999999986654 45677777776 456788888888888899984443
No 40
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=28.18 E-value=2.2e+02 Score=20.39 Aligned_cols=44 Identities=23% Similarity=0.429 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 035983 23 DTVMLKESAKEIRKRFEESRHVTSPTEIQRLLDEAREASRFISTM 67 (109)
Q Consensus 23 D~~~l~aar~~iR~~F~~n~~~~d~~~I~e~i~~a~ev~~~Lr~n 67 (109)
...+|......+|.+|.+++.++- +++++++...-+-=.||-++
T Consensus 68 ~l~~l~~eL~~Lr~~~l~rRPLtk-~dVeeLV~~IseQPK~IEkQ 111 (126)
T PF07028_consen 68 ELDVLSKELQALRKEYLERRPLTK-EDVEELVLRISEQPKFIEKQ 111 (126)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHhCcHHHHHH
Confidence 355778888899999999999974 56888887666655555543
No 41
>COG3189 Uncharacterized conserved protein [Function unknown]
Probab=28.12 E-value=1.3e+02 Score=21.24 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=22.7
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHhhcCC
Q 035983 17 RKSFAGDTVMLKESAKEIRKRFEESRH 43 (109)
Q Consensus 17 r~~F~gD~~~l~aar~~iR~~F~~n~~ 43 (109)
++.|.+|+.-..+++.+.+.|..++..
T Consensus 52 Rkwf~Hdp~~w~~F~~rY~~EL~~~~~ 78 (117)
T COG3189 52 RKWFHHDPKKWDEFRERYRAELNAQDA 78 (117)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccH
Confidence 467999999999999999999975543
No 42
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 2ONH_A 2ONG_B 3P5R_A 3P5P_A 3N0F_A 3N0G_B 3PYB_A 3PYA_A 3G4F_A 3G4D_B ....
Probab=26.56 E-value=1.8e+02 Score=21.63 Aligned_cols=46 Identities=22% Similarity=0.359 Sum_probs=29.7
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhcC---CCCCHHHHHHHHHHH
Q 035983 10 RSLIRATRKSFAGDTVMLKESAKEIRKRFEESR---HVTSPTEIQRLLDEA 57 (109)
Q Consensus 10 R~LlRa~r~~F~gD~~~l~aar~~iR~~F~~n~---~~~d~~~I~e~i~~a 57 (109)
=+|.+|+...|.|.. +|+.|+.-.+...++-. ..++| .+.+.|.+|
T Consensus 134 LsLYeAS~l~~~gE~-iLdeA~~Ft~~~L~~~~~~~~~~~~-~L~~~V~~A 182 (183)
T PF01397_consen 134 LSLYEASHLRFHGED-ILDEARAFTTKHLKSLLSNLSIPDP-HLAKEVKHA 182 (183)
T ss_dssp HHHHHHHTT--TT-H-HHHHHHHHHHHHHHHHHTTTCTTSC-HHHHHHHHH
T ss_pred HHHHHHHHccCCChH-HHHHHHHHHHHHHHHHhccCCCCcH-HHHHHHHHh
Confidence 356679999998876 89999998888877542 33333 466666665
No 43
>TIGR01599 PYST-A Plasmodium yoelii subtelomeric family PYST-A. A single high-scoring gene was identified in the complete genome of P. falciparum as well as a single gene from P. chaboudi from GenBank which were included in the seed. There are no obvious homologs to these genes in any non-Plasmodium organism. These observations suggest an expansion of this family in yoelii from a common Plasmodium ancestor gene (present in a single copy in falciparum).
Probab=26.14 E-value=1e+02 Score=23.59 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcc
Q 035983 44 VTSPTEIQRLLDEAREASRFISTMIV 69 (109)
Q Consensus 44 ~~d~~~I~e~i~~a~ev~~~Lr~nVV 69 (109)
++||+++.++.+...|++..|+.+..
T Consensus 8 C~npeE~~~A~eiM~EAv~~Lk~hAt 33 (208)
T TIGR01599 8 CTDPKEIKRAEEIMEEAELRLKRHAI 33 (208)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhCc
Confidence 68999999999999999999987654
No 44
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=23.57 E-value=4.7e+02 Score=23.44 Aligned_cols=65 Identities=25% Similarity=0.258 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHh---cceeeecCCC
Q 035983 4 EAMIAYRSLIRATRKSFAGDTVMLKESAKEIRKRFEESRHVTSPTEIQRLLDEAREASRFISTM---IVQAKLNERG 77 (109)
Q Consensus 4 ~aL~lYR~LlRa~r~~F~gD~~~l~aar~~iR~~F~~n~~~~d~~~I~e~i~~a~ev~~~Lr~n---VVQg~~~~~~ 77 (109)
.++.+||+++| + |+.|..-|. +..+|-. .-.++|..+....++.++..-++=.+. +-||..-..|
T Consensus 678 ka~d~yk~~hr---k-fpedldclk-flvri~~----dlgl~d~key~~klek~eki~eir~qresd~~qgk~~s~~ 745 (840)
T KOG2003|consen 678 KAFDLYKDIHR---K-FPEDLDCLK-FLVRIAG----DLGLKDAKEYADKLEKAEKIKEIREQRESDIKQGKDGSAG 745 (840)
T ss_pred HHHHHHHHHHH---h-CccchHHHH-HHHHHhc----cccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCC
Confidence 57888888886 3 888887763 3333433 335677777888888887776655544 7788876444
No 45
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=23.47 E-value=1e+02 Score=20.81 Aligned_cols=31 Identities=13% Similarity=-0.064 Sum_probs=24.1
Q ss_pred ChhHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q 035983 1 MAGEAMIAYRSLIRATRKSFAGDTVMLKESAK 32 (109)
Q Consensus 1 Mra~aL~lYR~LlRa~r~~F~gD~~~l~aar~ 32 (109)
|+.+++++-.-..||.+.++ |...++.+.+.
T Consensus 1 ~~~k~l~lLglA~rAGklv~-G~~~v~~aik~ 31 (104)
T PRK05583 1 MMNKFLNFLGLTKKAGKLLE-GYNKCEEAIKK 31 (104)
T ss_pred ChHHHHHHHHHHHHhCCeee-cHHHHHHHHHc
Confidence 88899999999999999876 77766555443
No 46
>KOG0816 consensus Protein involved in mRNA turnover [RNA processing and modification]
Probab=22.68 E-value=64 Score=25.13 Aligned_cols=39 Identities=18% Similarity=0.333 Sum_probs=27.9
Q ss_pred ChhHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH-HHHhh
Q 035983 1 MAGEAMIAYRSLIRATRKSFAGDTVMLKESAKEIR-KRFEE 40 (109)
Q Consensus 1 Mra~aL~lYR~LlRa~r~~F~gD~~~l~aar~~iR-~~F~~ 40 (109)
||+..|...|+-++-++..| |-..++.-|.-+.| +++++
T Consensus 48 MRn~~lk~iR~~~k~sr~f~-GknKVm~vaLG~~~~dE~~~ 87 (223)
T KOG0816|consen 48 MRNTTLKEIRQDFKNSRFFF-GKNKVMQVALGRSREDEYKE 87 (223)
T ss_pred cchHHHHHHHHHhhccceec-chhhHHHHHhcCCchhhHHH
Confidence 89999999999999777644 76666666665555 44443
No 47
>PF09860 DUF2087: Uncharacterized protein conserved in bacteria (DUF2087); InterPro: IPR018656 This domain, found in various hypothetical prokaryotic proteins and transcriptional activators, has no known function.
Probab=22.28 E-value=2.2e+02 Score=18.01 Aligned_cols=61 Identities=16% Similarity=0.195 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHhcceee-ec---CCCceEE
Q 035983 20 FAGDTVMLKESAKEIRKRFEESRHVTSPTEIQRLLDEAREASRFISTMIVQAK-LN---ERGGYEV 81 (109)
Q Consensus 20 F~gD~~~l~aar~~iR~~F~~n~~~~d~~~I~e~i~~a~ev~~~Lr~nVVQg~-~~---~~~~y~l 81 (109)
|+.-..........|-..|...+.. ++.+|.+.|+..-+.-..||+-.|=.. +. +.+.|..
T Consensus 6 ~P~k~~~r~~iL~~l~~~f~~g~~y-~E~EVN~~L~~~~~D~a~LRR~LVd~g~L~R~~dg~~Ywr 70 (71)
T PF09860_consen 6 WPSKRKKRLVILEYLASRFEPGREY-SEKEVNEILKRFFDDYATLRRYLVDYGLLERTRDGSRYWR 70 (71)
T ss_pred cCccHHHHHHHHHHHHHhCCCCCcc-CHHHHHHHHHHHcccHHHHHHHHHHcCCeeecCCCCeeee
Confidence 3344444456677788888544444 567899999999999999999999544 33 2446653
No 48
>PF10421 OAS1_C: 2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus ; InterPro: IPR018952 This is the largely alpha-helical, C-terminal half of 2'-5'-oligoadenylate synthetase 1, being described as domain 2 of the enzyme and homologous to a tandem ubiquitin repeat. It carries the region of enzymic activity between residues 320 and 344 at the extreme C-terminal end []. Oligoadenylate synthetases are antiviral enzymes that counteract viral attack by degrading viral RNA. The enzyme uses ATP in 2'-specific nucleotidyl transfer reactions to synthesise 2'.5'-oligoadenylates, which activate latent ribonuclease, resulting in degradation of viral RNA and inhibition of virus replication []. This domain is often associated with IPR002934 from INTERPRO. ; PDB: 1PX5_B.
Probab=20.25 E-value=2.2e+02 Score=21.63 Aligned_cols=46 Identities=28% Similarity=0.487 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 035983 6 MIAYRSLIRATRKSF-AGDTVMLKESAKEIRKRFEESRHVTSPTEIQRLLDEAR 58 (109)
Q Consensus 6 L~lYR~LlRa~r~~F-~gD~~~l~aar~~iR~~F~~n~~~~d~~~I~e~i~~a~ 58 (109)
-..|+.|+|+....- .|.+ ..+-.+....|.+++ |.+++.+|...+
T Consensus 6 p~vY~~Li~~~~~~~~~gef---S~cftelQ~~Fvk~r----P~klK~LIrLVK 52 (190)
T PF10421_consen 6 PQVYRDLIRECDMSEKPGEF---SACFTELQRNFVKHR----PTKLKNLIRLVK 52 (190)
T ss_dssp HHHHHHHHHHHHHHT-TTTT---GGGGHHHHHHHHHTS-----HHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCccc---hHHHHHHHHHHHHhC----CHHHHHHHHHHH
Confidence 368999999998322 3333 456777889999877 577887776654
No 49
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=20.10 E-value=3.6e+02 Score=23.65 Aligned_cols=57 Identities=14% Similarity=0.236 Sum_probs=46.7
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHhcceeeecCCCceEEeeccCCCC
Q 035983 33 EIRKRFEESRHVTSPTEIQRLLDEAREASRFISTMIVQAKLNERGGYEVKPTQEHAG 89 (109)
Q Consensus 33 ~iR~~F~~n~~~~d~~~I~e~i~~a~ev~~~Lr~nVVQg~~~~~~~y~l~i~~~h~~ 89 (109)
-+.+.+..-..+.|++.+..++.++.++.++|-..=|--...++|.|.|-...-|.-
T Consensus 65 Hv~DTL~AG~glcD~~aV~~iv~~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~ 121 (518)
T COG0029 65 HVADTLAAGAGLCDEEAVEFIVSEAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSR 121 (518)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHhHHHHHHHHHHcCCCCcCCCCCceeeeeecccCC
Confidence 367888889999999999999999999999998754444455678899988877763
No 50
>PRK01903 rnpA ribonuclease P; Reviewed
Probab=20.02 E-value=86 Score=22.13 Aligned_cols=26 Identities=15% Similarity=0.291 Sum_probs=20.0
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHhhcCC
Q 035983 17 RKSFAGDTVMLKESAKEIRKRFEESRH 43 (109)
Q Consensus 17 r~~F~gD~~~l~aar~~iR~~F~~n~~ 43 (109)
++.| |....++.+++.||+.|+.+++
T Consensus 58 KK~~-g~AV~RNRiKR~lREa~R~~~~ 83 (133)
T PRK01903 58 KKRV-PRAVKRNRIKRLMREAYRLEKH 83 (133)
T ss_pred cccC-CchhhhhHHHHHHHHHHHHhHh
Confidence 4444 4577788999999999998776
Done!