Query 035983
Match_columns 109
No_of_seqs 106 out of 245
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 13:49:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035983.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035983hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2x9q_A Cyclodipeptide syntheta 50.6 44 0.0015 25.9 6.4 65 7-72 177-246 (289)
2 2w84_A Peroxisomal membrane pr 50.1 6.8 0.00023 24.4 1.4 43 12-57 17-59 (70)
3 3ff5_A PEX14P, peroxisomal bio 48.4 2.5 8.4E-05 25.1 -0.8 43 11-56 11-53 (54)
4 2i6h_A AGR_C_189P, hypothetica 44.2 6.3 0.00022 29.2 0.7 30 10-39 95-124 (207)
5 2ke4_A CDC42-interacting prote 41.4 26 0.00088 22.8 3.3 40 29-68 39-78 (98)
6 2hc5_A ORF 99, hypothetical pr 40.7 22 0.00074 23.8 2.9 60 42-101 32-92 (117)
7 3oqv_A ALBC; rossman fold, cyc 28.7 1.8E+02 0.0061 21.9 6.5 57 7-63 126-185 (247)
8 3gz2_P Invasin IPAB, 62 kDa an 27.4 14 0.00049 22.7 0.2 11 89-99 23-33 (78)
9 4b6x_A AVRRPS4, avirulence pro 27.2 1.1E+02 0.0036 19.6 4.3 38 31-68 38-78 (90)
10 3oqi_A YVMC, putative uncharac 27.1 2E+02 0.0067 21.8 6.6 65 7-71 124-196 (257)
11 2fe3_A Peroxide operon regulat 24.4 1.5E+02 0.0053 19.4 8.0 90 1-97 1-108 (145)
12 1nz0_A Ribonuclease P protein 22.2 76 0.0026 20.5 3.1 23 22-44 56-78 (118)
13 4f02_C Eukaryotic translation 21.6 22 0.00074 17.9 0.2 10 100-109 5-14 (27)
14 1a6f_A RNAse P protein, ribonu 21.1 77 0.0026 20.6 2.9 22 22-43 55-76 (119)
15 2ljp_A Ribonuclease P protein 20.9 95 0.0032 20.0 3.3 26 17-43 53-78 (119)
16 1ldd_A APC2WHB, anaphase promo 20.7 57 0.002 20.1 2.1 24 58-81 48-73 (74)
17 2l7a_A Talin-1; vinculin, bund 20.2 2.1E+02 0.0072 19.3 5.2 65 7-71 20-94 (131)
No 1
>2x9q_A Cyclodipeptide synthetase; ligase; 2.02A {Mycobacterium tuberculosis}
Probab=50.57 E-value=44 Score=25.92 Aligned_cols=65 Identities=22% Similarity=0.188 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhcCC----CCCHHHHHHHHHHHH-HHHHHHHHhcceee
Q 035983 7 IAYRSLIRATRKSFAGDTVMLKESAKEIRKRFEESRH----VTSPTEIQRLLDEAR-EASRFISTMIVQAK 72 (109)
Q Consensus 7 ~lYR~LlRa~r~~F~gD~~~l~aar~~iR~~F~~n~~----~~d~~~I~e~i~~a~-ev~~~Lr~nVVQg~ 72 (109)
-.||.+++....+|..|+....++....+.-... +- ..+...++.++.... |.--||-..-|-|+
T Consensus 177 p~Yr~l~~~v~~af~td~~FR~aC~~Ms~~vL~~-r~g~~~~~s~~~l~~A~~YIlAELPffL~sp~Il~v 246 (289)
T 2x9q_A 177 EAYRELHADLLTRLKDDEDMRAVCQDLVRRFLST-KVGPRQGATATQEQVCMDYICAEAPLFLDTPAILGV 246 (289)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH-C-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhc-CCCCCcCCCHHHHHHHHHHHHHhhHHHcCCchhcCC
Confidence 4799999999999999999988888877766654 44 567777777777654 44555666666554
No 2
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=50.10 E-value=6.8 Score=24.42 Aligned_cols=43 Identities=21% Similarity=0.348 Sum_probs=31.1
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 035983 12 LIRATRKSFAGDTVMLKESAKEIRKRFEESRHVTSPTEIQRLLDEA 57 (109)
Q Consensus 12 LlRa~r~~F~gD~~~l~aar~~iR~~F~~n~~~~d~~~I~e~i~~a 57 (109)
|+-.+.. |=.|+.+..+. ..-+.+|.+.|++++ ++|+++++.+
T Consensus 17 li~~Av~-FLqdp~V~~sp-~~~K~~FL~sKGLt~-eEI~~Al~ra 59 (70)
T 2w84_A 17 LIATAVK-FLQNSRVRQSP-LATRRAFLKKKGLTD-EEIDMAFQQS 59 (70)
T ss_dssp HHHHHHH-HHCSTTGGGSC-HHHHHHHHHHTTCCH-HHHHHHHHHH
T ss_pred HHHHHHH-HhCChhhhhCC-HHHHHHHHHHcCCCH-HHHHHHHHHc
Confidence 4555555 77777776555 346889999999985 5798888876
No 3
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=48.42 E-value=2.5 Score=25.14 Aligned_cols=43 Identities=21% Similarity=0.346 Sum_probs=30.2
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 035983 11 SLIRATRKSFAGDTVMLKESAKEIRKRFEESRHVTSPTEIQRLLDE 56 (109)
Q Consensus 11 ~LlRa~r~~F~gD~~~l~aar~~iR~~F~~n~~~~d~~~I~e~i~~ 56 (109)
.|+-.+.. |=.|+.+..+.. .-+.+|.+.+++++ ++|+++++.
T Consensus 11 ~li~~Av~-FL~dp~V~~sp~-~~K~~FL~sKGLt~-~EI~~Al~r 53 (54)
T 3ff5_A 11 PLIATAVK-FLQNSRVRQSPL-ATRRAFLKKKGLTD-EEIDLAFQQ 53 (54)
T ss_dssp HHHHHHHH-HHHCTTGGGSCH-HHHHHHHHHTTCCH-HHHHHHHHH
T ss_pred HHHHHHHH-HhCChhhhcCCH-HHHHHHHHHcCCCH-HHHHHHHHc
Confidence 45566665 667777655443 46889999999985 568887764
No 4
>2i6h_A AGR_C_189P, hypothetical protein ATU0120; structural genomics, APC5905, PSI-2; 1.75A {Agrobacterium tumefaciens str} SCOP: a.118.8.5
Probab=44.16 E-value=6.3 Score=29.22 Aligned_cols=30 Identities=23% Similarity=0.327 Sum_probs=27.2
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHh
Q 035983 10 RSLIRATRKSFAGDTVMLKESAKEIRKRFE 39 (109)
Q Consensus 10 R~LlRa~r~~F~gD~~~l~aar~~iR~~F~ 39 (109)
|++.|-+-++|..|..+|..|+.-|..++-
T Consensus 95 RNifRgt~~AFa~D~~Al~lA~~ai~~G~d 124 (207)
T 2i6h_A 95 RNCFRGTAHMYATDPLARFFADEAIRRGHD 124 (207)
T ss_dssp HHHSTTSGGGTTTHHHHHHHHHHHHHTTHH
T ss_pred HhhcCCCHHHHcCCHHHHHHHHHHHHcCch
Confidence 888888889999999999999999988775
No 5
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=41.42 E-value=26 Score=22.79 Aligned_cols=40 Identities=13% Similarity=0.312 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHhc
Q 035983 29 ESAKEIRKRFEESRHVTSPTEIQRLLDEAREASRFISTMI 68 (109)
Q Consensus 29 aar~~iR~~F~~n~~~~d~~~I~e~i~~a~ev~~~Lr~nV 68 (109)
.+..++..-|.+|....||..++..|.+...-++.|+.++
T Consensus 39 egl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el 78 (98)
T 2ke4_A 39 EALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEV 78 (98)
T ss_dssp THHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667889999999999999999999999888888888765
No 6
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=40.67 E-value=22 Score=23.81 Aligned_cols=60 Identities=17% Similarity=0.187 Sum_probs=44.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhcceeeecCCCceEEeeccCCCCCc-ccCCChhhhh
Q 035983 42 RHVTSPTEIQRLLDEAREASRFISTMIVQAKLNERGGYEVKPTQEHAGAT-LDIPSEEILR 101 (109)
Q Consensus 42 ~~~~d~~~I~e~i~~a~ev~~~Lr~nVVQg~~~~~~~y~l~i~~~h~~~~-~elgdn~~ik 101 (109)
....++++++++++..++.+..+.+++-=....+.|++-+++-....+-. -|+|..+.++
T Consensus 32 ~~~~~~eel~~av~~lN~~~~~~n~~L~F~vdee~~~~vVkVvD~~TgEVIRqIPpEe~L~ 92 (117)
T 2hc5_A 32 VHQVSYTNLAEMVGEMNKLLEPSQVHLKFELHDKLNEYYVKVIEDSTNEVIREIPPKRWLD 92 (117)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTTSSCCEEEEEEEETTEEEEEEEETTTTEEEEEECHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCceEEEEecCCCcEEEEEEECCCCcEEEeCChHHHHH
Confidence 44567889999999999998888877766666688999999876644433 3566666554
No 7
>3oqv_A ALBC; rossman fold, cyclodipeptide synthase, aminoacyl-tRNA, prote binding; 1.90A {Streptomyces noursei}
Probab=28.71 E-value=1.8e+02 Score=21.86 Aligned_cols=57 Identities=14% Similarity=0.166 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhcC---CCCCHHHHHHHHHHHHHHHHH
Q 035983 7 IAYRSLIRATRKSFAGDTVMLKESAKEIRKRFEESR---HVTSPTEIQRLLDEAREASRF 63 (109)
Q Consensus 7 ~lYR~LlRa~r~~F~gD~~~l~aar~~iR~~F~~n~---~~~d~~~I~e~i~~a~ev~~~ 63 (109)
-.||.++.....+|..|.....++...++.-....- ...+++.++..+....+=+=|
T Consensus 126 ~~Y~~l~~~ve~a~~~d~~fR~ac~~ms~~~l~~rl~~g~~~~e~~l~~a~~YilaElPf 185 (247)
T 3oqv_A 126 PEYRAVRERTDRAFEEDAEFATACEDMVRAVVMNRPGDGVGISAEHLRAGLNYVLAEAPL 185 (247)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCSSSCCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHcccCCCCCCCHHHHHHHHHHHHHhhHH
Confidence 479999999999999999888777776666555332 245677777777766544433
No 8
>3gz2_P Invasin IPAB, 62 kDa antigen; tetratricopeptide repeat, TPR, chaperone, chaperone binding virulence, secreted, transmembrane; 2.65A {Shigella flexneri}
Probab=27.40 E-value=14 Score=22.70 Aligned_cols=11 Identities=9% Similarity=0.172 Sum_probs=8.5
Q ss_pred CCcccCCChhh
Q 035983 89 GATLDIPSEEI 99 (109)
Q Consensus 89 ~~~~elgdn~~ 99 (109)
-++||||||-.
T Consensus 23 ltstelgdnti 33 (78)
T 3gz2_P 23 LTSTELGDNTI 33 (78)
T ss_pred EeeeccCccHH
Confidence 46789999853
No 9
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=27.22 E-value=1.1e+02 Score=19.63 Aligned_cols=38 Identities=16% Similarity=0.280 Sum_probs=27.9
Q ss_pred HHHHHHHHhhcCCCCCHHHHH---HHHHHHHHHHHHHHHhc
Q 035983 31 AKEIRKRFEESRHVTSPTEIQ---RLLDEAREASRFISTMI 68 (109)
Q Consensus 31 r~~iR~~F~~n~~~~d~~~I~---e~i~~a~ev~~~Lr~nV 68 (109)
.+-++++..+..++..|..|. .++.+|+..+.-|.+++
T Consensus 38 i~~Lt~eLq~A~~eaNpaeIA~~~~~L~qAraDL~~l~r~~ 78 (90)
T 4b6x_A 38 VNNLTDELQDAIDEANPAEIANTSQQLRHARADLADLQRRF 78 (90)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 455778888888888999884 67888887766555544
No 10
>3oqi_A YVMC, putative uncharacterized protein YVMC; tRNA, rossmann fold, ligase; HET: NHE; 1.70A {Bacillus licheniformis} PDB: 3oqh_A* 3oqj_A* 3s7t_A* 3oqi_B*
Probab=27.06 E-value=2e+02 Score=21.78 Aligned_cols=65 Identities=15% Similarity=0.124 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhc----CC---CCCHHHHHHHHHHHHHHHH-HHHHhccee
Q 035983 7 IAYRSLIRATRKSFAGDTVMLKESAKEIRKRFEES----RH---VTSPTEIQRLLDEAREASR-FISTMIVQA 71 (109)
Q Consensus 7 ~lYR~LlRa~r~~F~gD~~~l~aar~~iR~~F~~n----~~---~~d~~~I~e~i~~a~ev~~-~Lr~nVVQg 71 (109)
-.|+.++.....+|..|.....++...++.-.... .. ..+++.+...+....+=+= ||-..-+-|
T Consensus 124 ~~Y~~l~~~ve~af~~d~~fR~ac~~ms~~~L~~r~~g~~~~~~~~se~~l~~a~~YIlaElPffl~s~~il~ 196 (257)
T 3oqi_A 124 TAYRNLRMEVEAAFFDQTHFRNACLEMSHAAILGRARGTRMDVVEVSADMLELAVEYVIAELPFFIAAPDILG 196 (257)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHcccCCCCCCcCCCCHHHHHHHHHHHHHhhHHHcCcHhhcC
Confidence 47999999999999999988888777776666522 12 4567778777776654443 333333333
No 11
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=24.41 E-value=1.5e+02 Score=19.36 Aligned_cols=90 Identities=12% Similarity=0.137 Sum_probs=50.3
Q ss_pred ChhHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHH---------HHHHHHHHHH-Hhcce
Q 035983 1 MAGEAMIAYRSLIRATRKSFAGDTVMLKESAKEIRKRFEESRHVTSPTEIQRLLD---------EAREASRFIS-TMIVQ 70 (109)
Q Consensus 1 Mra~aL~lYR~LlRa~r~~F~gD~~~l~aar~~iR~~F~~n~~~~d~~~I~e~i~---------~a~ev~~~Lr-~nVVQ 70 (109)
|++..+..+..+||.... .- +.-|..|=+.|.++....+.++|-+.+. -.-..+++|. ..+|.
T Consensus 1 ~~~~~~~~~~~~l~~~g~--r~-----T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 1 MAAHELKEALETLKETGV--RI-----TPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp ---CHHHHHHHHHHHTTC--CC-----CHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred CchhHHHHHHHHHHHcCC--CC-----CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 888888888888887642 11 2356667777776555555666666652 2233444444 44454
Q ss_pred eeecCCC--ceEEeeccCC------CCCcccCCCh
Q 035983 71 AKLNERG--GYEVKPTQEH------AGATLDIPSE 97 (109)
Q Consensus 71 g~~~~~~--~y~l~i~~~h------~~~~~elgdn 97 (109)
-...++| .|.+..+++| +|.++|+++.
T Consensus 74 ~~~~~~~~~~Y~~~~~~H~HliC~~Cg~v~~~~~~ 108 (145)
T 2fe3_A 74 ELTYGDASSRFDFVTSDHYHAICENCGKIVDFHYP 108 (145)
T ss_dssp EECCTTSCCEEEECCCCEEEEEETTTCCEEECCCC
T ss_pred EEeeCCCceEEECCCCCcceEEECCCCCEEEecCC
Confidence 4444443 6887643322 3777887654
No 12
>1nz0_A Ribonuclease P protein component; endonuclease, RNAse, ALFA-beta sandwich, dimer, structural genomics, BSGC structure funded by NIH; HET: MSE; 1.20A {Thermotoga maritima} SCOP: d.14.1.2 PDB: 3ok7_A 3okb_A 3q1q_A 3q1r_A
Probab=22.24 E-value=76 Score=20.47 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCC
Q 035983 22 GDTVMLKESAKEIRKRFEESRHV 44 (109)
Q Consensus 22 gD~~~l~aar~~iR~~F~~n~~~ 44 (109)
|....++.+++.||+.|+.+.+.
T Consensus 56 g~AV~RNRiKR~lRE~~R~~~~~ 78 (118)
T 1nz0_A 56 GKATRRNKLKRWVREIFRRNKGV 78 (118)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTT
T ss_pred CChhHHhHHHHHHHHHHHHHHhh
Confidence 56889999999999999988774
No 13
>4f02_C Eukaryotic translation initiation factor 4 gamma; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens}
Probab=21.65 E-value=22 Score=17.93 Aligned_cols=10 Identities=60% Similarity=1.062 Sum_probs=6.7
Q ss_pred hhhccCCCCC
Q 035983 100 LRKSAQGGKD 109 (109)
Q Consensus 100 ik~~~~~~~~ 109 (109)
|+.+.+||+|
T Consensus 5 irdpnqggkd 14 (27)
T 4f02_C 5 IRDPNQGGKD 14 (27)
T ss_pred ecCccccchh
Confidence 4556777776
No 14
>1a6f_A RNAse P protein, ribonuclease P protein; endonuclease, subunit; 2.60A {Bacillus subtilis} SCOP: d.14.1.2
Probab=21.12 E-value=77 Score=20.56 Aligned_cols=22 Identities=32% Similarity=0.524 Sum_probs=19.0
Q ss_pred CCHHHHHHHHHHHHHHHhhcCC
Q 035983 22 GDTVMLKESAKEIRKRFEESRH 43 (109)
Q Consensus 22 gD~~~l~aar~~iR~~F~~n~~ 43 (109)
|....++.+++.||+.|+.+.+
T Consensus 55 g~AV~RNRiKR~lRE~~R~~~~ 76 (119)
T 1a6f_A 55 GNAVMRNRIKRLIRQAFLEEKE 76 (119)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTT
T ss_pred CcchhHhHHHHHHHHHHHHhhc
Confidence 4588899999999999998766
No 15
>2ljp_A Ribonuclease P protein component; rnasep, ribozyme, hydrolase; NMR {Escherichia coli}
Probab=20.86 E-value=95 Score=20.03 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=21.3
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHhhcCC
Q 035983 17 RKSFAGDTVMLKESAKEIRKRFEESRH 43 (109)
Q Consensus 17 r~~F~gD~~~l~aar~~iR~~F~~n~~ 43 (109)
++.+ |....++.+++.||+.|+.+.+
T Consensus 53 KK~v-g~AV~RNRiKR~lRe~~R~~~~ 78 (119)
T 2ljp_A 53 KKNV-RRAHERNRIKRLTRESFRLRQH 78 (119)
T ss_dssp TTTS-CCHHHHHHHHHHHHHHHTTCTT
T ss_pred CccC-CchhHHhHHHHHHHHHHHHHHh
Confidence 3434 6788999999999999998765
No 16
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=20.73 E-value=57 Score=20.12 Aligned_cols=24 Identities=21% Similarity=0.599 Sum_probs=20.2
Q ss_pred HHHHHHHHHhcceeeec--CCCceEE
Q 035983 58 REASRFISTMIVQAKLN--ERGGYEV 81 (109)
Q Consensus 58 ~ev~~~Lr~nVVQg~~~--~~~~y~l 81 (109)
.+...||-+.|-+|++. +.|.|+|
T Consensus 48 ~eL~~fL~~~v~e~kL~~~~gG~YkL 73 (74)
T 1ldd_A 48 QQLEGYLNTLADEGRLKYIANGSYEI 73 (74)
T ss_dssp HHHHHHHHHHHHTTSEECCTTTEEEE
T ss_pred HHHHHHHHHHHhCCeEEEeCCCEEeC
Confidence 46678899999999988 6899987
No 17
>2l7a_A Talin-1; vinculin, bundle, focal adhesion, integrin, cell ADHE; NMR {Mus musculus}
Probab=20.22 E-value=2.1e+02 Score=19.34 Aligned_cols=65 Identities=15% Similarity=0.244 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhhcCCC--CHH-HHHHHHHHHH------HHHh-hcCCCCCHHHHHHHHHHHHHHHHHHHHhccee
Q 035983 7 IAYRSLIRATRKSFAG--DTV-MLKESAKEIR------KRFE-ESRHVTSPTEIQRLLDEAREASRFISTMIVQA 71 (109)
Q Consensus 7 ~lYR~LlRa~r~~F~g--D~~-~l~aar~~iR------~~F~-~n~~~~d~~~I~e~i~~a~ev~~~Lr~nVVQg 71 (109)
..|..+|.++...|.+ |+. |...++.-.| ..++ +--+..||+.++.++.-++.+++-+.+.|--+
T Consensus 20 ~~~~~il~~t~~l~~s~~~p~~Mv~~ak~iAr~a~~Li~~~K~eAd~seDp~~~~rLl~AAk~La~At~~MVeaA 94 (131)
T 2l7a_A 20 QATDTILTVTENIFSSMGDAGEMVRQARILAQATSDLVNAIKADAEGESDLENSRKLLSAAKILADATAKMVEAA 94 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777776666644 433 4444444332 2233 22334699999999999999998888766433
Done!