Query 035983
Match_columns 109
No_of_seqs 106 out of 245
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 13:49:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035983.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035983hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2pv7a1 a.100.1.12 (A:244-371) 70.8 6.2 0.00045 24.5 6.0 50 7-65 43-92 (128)
2 d2hc5a1 d.352.1.1 (A:1-109) Hy 54.1 5 0.00036 25.0 3.0 59 44-102 34-93 (109)
3 d2i6ha1 a.118.8.5 (A:1-179) Hy 35.3 5 0.00036 27.1 0.7 31 10-40 73-103 (179)
4 d1zcba2 c.37.1.8 (A:47-75,A:20 35.2 35 0.0026 20.9 5.0 46 20-67 140-198 (200)
5 d1qsda_ a.7.5.1 (A:) Tubulin c 35.2 30 0.0022 21.1 4.5 54 9-62 48-101 (102)
6 d1whua_ a.4.9.1 (A:) Polynucle 35.1 42 0.003 20.0 8.6 72 4-77 21-96 (104)
7 d1neka2 c.3.1.4 (A:1-235,A:356 28.7 66 0.0048 21.7 6.0 50 34-83 69-118 (330)
8 d2cqna1 a.159.2.1 (A:743-806) 28.5 8.6 0.00062 22.1 0.8 31 6-41 5-35 (64)
9 d1ldja2 a.118.17.1 (A:17-410) 27.8 44 0.0032 23.7 5.0 32 4-39 353-384 (394)
10 d1uz3a1 a.283.1.1 (A:13-102) E 27.0 37 0.0027 20.4 3.7 43 6-53 15-57 (90)
11 d2hyec2 a.118.17.1 (C:55-401) 25.9 52 0.0038 22.8 5.0 33 4-40 310-342 (347)
12 d1kxpd3 a.126.1.1 (D:405-473) 24.3 61 0.0044 18.4 5.2 34 27-60 11-44 (69)
13 d1k28a1 b.40.8.1 (A:6-129) Tai 24.2 24 0.0018 22.2 2.6 25 75-99 18-47 (124)
14 d1ldda_ a.4.5.34 (A:) Anaphase 23.2 22 0.0016 20.6 2.1 24 58-81 48-73 (74)
15 d1nz0a_ d.14.1.2 (A:) RNase P 21.9 38 0.0027 19.9 3.1 27 16-44 43-69 (109)
No 1
>d2pv7a1 a.100.1.12 (A:244-371) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}
Probab=70.83 E-value=6.2 Score=24.48 Aligned_cols=50 Identities=20% Similarity=0.206 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 035983 7 IAYRSLIRATRKSFAGDTVMLKESAKEIRKRFEESRHVTSPTEIQRLLDEAREASRFIS 65 (109)
Q Consensus 7 ~lYR~LlRa~r~~F~gD~~~l~aar~~iR~~F~~n~~~~d~~~I~e~i~~a~ev~~~Lr 65 (109)
..||..++-+.+++.+|+.+. ++=|..|+.. ...+++.+....+..+.|.
T Consensus 43 ~~fr~~l~~~tRIa~~~p~lw-------~dI~~~N~~~--~~~l~~~~~~l~~l~~~i~ 92 (128)
T d2pv7a1 43 PIYRLELAMIGRLFAQDAELY-------ADIIMDKSEN--LAVIETLKQTYDEALTFFE 92 (128)
T ss_dssp HHHHHHHHHHHHHHTSCHHHH-------HHHHC----C--HHHHHHHHHHHHHHHHHHH
T ss_pred HhHhhHHHHHHHHHCCCHHHH-------HHHHHHCHHH--HHHHHHHHHHHHHHHHHHH
Confidence 468999998888899999873 4445556542 3455655555555555554
No 2
>d2hc5a1 d.352.1.1 (A:1-109) Hypothetical protein YvyC {Bacillus subtilis [TaxId: 1423]}
Probab=54.14 E-value=5 Score=24.95 Aligned_cols=59 Identities=15% Similarity=0.177 Sum_probs=47.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcceeeecCCCceEEeeccCCCCCcc-cCCChhhhhh
Q 035983 44 VTSPTEIQRLLDEAREASRFISTMIVQAKLNERGGYEVKPTQEHAGATL-DIPSEEILRK 102 (109)
Q Consensus 44 ~~d~~~I~e~i~~a~ev~~~Lr~nVVQg~~~~~~~y~l~i~~~h~~~~~-elgdn~~ik~ 102 (109)
..++++++++++..++.+..+.+++-=....+.|.|-+++-....+-.+ |+|..+.++=
T Consensus 34 e~s~~~l~~~v~~ln~~l~~~~~~L~F~~de~~~~~vVkVvD~~T~eVIRqIP~Ee~l~l 93 (109)
T d2hc5a1 34 QVSYTNLAEMVGEMNKLLEPSQVHLKFELHDKLNEYYVKVIEDSTNEVIREIPPKRWLDF 93 (109)
T ss_dssp CCCHHHHHHHHHHHHHHHTTSSCCEEEEEEEETTEEEEEEEETTTTEEEEEECHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhcCCceEEEEecCCCCEEEEEEECCCCeeeeeCCCHHHHHH
Confidence 3478899999999999998888888777777889999999877666555 6787776653
No 3
>d2i6ha1 a.118.8.5 (A:1-179) Hypothetical protein Atu0120 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=35.32 E-value=5 Score=27.13 Aligned_cols=31 Identities=23% Similarity=0.335 Sum_probs=26.9
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHhh
Q 035983 10 RSLIRATRKSFAGDTVMLKESAKEIRKRFEE 40 (109)
Q Consensus 10 R~LlRa~r~~F~gD~~~l~aar~~iR~~F~~ 40 (109)
|++.|-+-.+|.+|..++..++.-|..++-.
T Consensus 73 RNifRgt~~Afa~D~~A~~~a~~~i~~g~~~ 103 (179)
T d2i6ha1 73 RNCFRGTAHMYATDPLARFFADEAIRRGHDQ 103 (179)
T ss_dssp HHHSTTSGGGTTTHHHHHHHHHHHHHTTHHH
T ss_pred HHHhcCCcchhhccHHHHHHHHHHHHhhhhc
Confidence 7788888889999999999999999888763
No 4
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=35.23 E-value=35 Score=20.91 Aligned_cols=46 Identities=17% Similarity=0.379 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcC-------------CCCCHHHHHHHHHHHHHHHHHHHHh
Q 035983 20 FAGDTVMLKESAKEIRKRFEESR-------------HVTSPTEIQRLLDEAREASRFISTM 67 (109)
Q Consensus 20 F~gD~~~l~aar~~iR~~F~~n~-------------~~~d~~~I~e~i~~a~ev~~~Lr~n 67 (109)
|.|.+....++...+.+.|.+.. ...|..-|++......|. +|++|
T Consensus 140 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~--i~~~~ 198 (200)
T d1zcba2 140 FEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDT--ILHDN 198 (200)
T ss_dssp CCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHH--HHHHH
T ss_pred ccCCcchHHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHH--HHHHh
Confidence 33444445688889999998632 235788888877655443 45554
No 5
>d1qsda_ a.7.5.1 (A:) Tubulin chaperone cofactor A {Baker's yeast (Saccharomyces cerevisiae), Rbl2p [TaxId: 4932]}
Probab=35.19 E-value=30 Score=21.09 Aligned_cols=54 Identities=7% Similarity=0.140 Sum_probs=36.8
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Q 035983 9 YRSLIRATRKSFAGDTVMLKESAKEIRKRFEESRHVTSPTEIQRLLDEAREASR 62 (109)
Q Consensus 9 YR~LlRa~r~~F~gD~~~l~aar~~iR~~F~~n~~~~d~~~I~e~i~~a~ev~~ 62 (109)
-+.+|..++..++.-..=|..|.....+-...+.+..+-.+..+.|..|.++++
T Consensus 48 q~evL~Es~~mipd~~~RL~~a~~~L~~~l~~~~~~ee~~~akeal~~ak~~l~ 101 (102)
T d1qsda_ 48 QEEVLDDTKRLLPTLYEKIREFKEDLEQFLKTYQGTEDVSDARSAITSAQELLD 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhh
Confidence 355666676666554555666777776666677777676777888888877753
No 6
>d1whua_ a.4.9.1 (A:) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=35.05 E-value=42 Score=20.01 Aligned_cols=72 Identities=13% Similarity=0.121 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCHH----HHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHhcceeeecCCC
Q 035983 4 EAMIAYRSLIRATRKSFAGDTV----MLKESAKEIRKRFEESRHVTSPTEIQRLLDEAREASRFISTMIVQAKLNERG 77 (109)
Q Consensus 4 ~aL~lYR~LlRa~r~~F~gD~~----~l~aar~~iR~~F~~n~~~~d~~~I~e~i~~a~ev~~~Lr~nVVQg~~~~~~ 77 (109)
.+..+|..=|+++-.-|..|.. ++...+.++-+.|.+.-...++..|...+..... +++|++|+-...--||
T Consensus 21 ~V~~~~~~ki~~a~~~~~~dK~eR~~al~~ik~ei~~~l~e~~~~~~~~~i~~af~~v~k--~ivR~~IL~~~~RiDG 96 (104)
T d1whua_ 21 YTKIIAMEKLYAVFTDYEHDKVSRDEAVNKIRLDTEEHLKEKFPEVDQFEIIESFNIVAK--EVFRSIILNEYKRCDG 96 (104)
T ss_dssp HHHHHHHHHHHHHHSSCCSCSHHHHHHHHHHHHHHHHHHTTTCSSSCHHHHHHHHHHHHH--HHHHHHHTTSSCSCCC
T ss_pred HHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHH--HHHHHHHHcCCCcCCC
Confidence 3455666667776544545543 4555555555566543333456667766655543 6788888865554444
No 7
>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}
Probab=28.70 E-value=66 Score=21.74 Aligned_cols=50 Identities=14% Similarity=0.115 Sum_probs=40.8
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHhcceeeecCCCceEEee
Q 035983 34 IRKRFEESRHVTSPTEIQRLLDEAREASRFISTMIVQAKLNERGGYEVKP 83 (109)
Q Consensus 34 iR~~F~~n~~~~d~~~I~e~i~~a~ev~~~Lr~nVVQg~~~~~~~y~l~i 83 (109)
..+.++....+.||+.++.+.+.+-+..++|.+.=|.-...++|.|.+..
T Consensus 69 ~~Dtl~aG~~l~d~~~v~~l~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~ 118 (330)
T d1neka2 69 MYDTVKGSDYIGDQDAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRP 118 (330)
T ss_dssp HHHHHHHHTSCSCHHHHHHHHHHHHHHHHHHHHTTCCCCBCSCBTTBCCC
T ss_pred HHHHHHhhhhccCHHHHHHHHHHhHHHHHHHhhccccccccCCCceehhc
Confidence 55566677888999999999999999999999888877777777766543
No 8
>d2cqna1 a.159.2.1 (A:743-806) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.49 E-value=8.6 Score=22.09 Aligned_cols=31 Identities=19% Similarity=0.335 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhc
Q 035983 6 MIAYRSLIRATRKSFAGDTVMLKESAKEIRKRFEES 41 (109)
Q Consensus 6 L~lYR~LlRa~r~~F~gD~~~l~aar~~iR~~F~~n 41 (109)
-++||+|||.+. ++=|+ +.....+|..|...
T Consensus 5 E~aFknmLk~~~--Ppi~~---~s~WeevR~r~ene 35 (64)
T d2cqna1 5 ESAFKSMLKQAA--PPIEL---DAVWEDIRERFVKE 35 (64)
T ss_dssp HHHHHHHHHTCS--SCCCT---TCCHHHHHHHHTTS
T ss_pred HHHHHHHHHHcC--CCCCC---cCcHHHHHHHHhcc
Confidence 479999999886 33355 35788899999754
No 9
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.83 E-value=44 Score=23.66 Aligned_cols=32 Identities=9% Similarity=0.045 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHh
Q 035983 4 EAMIAYRSLIRATRKSFAGDTVMLKESAKEIRKRFE 39 (109)
Q Consensus 4 ~aL~lYR~LlRa~r~~F~gD~~~l~aar~~iR~~F~ 39 (109)
..|.+|+.+-+-...+|.+|+. +...+++.|+
T Consensus 353 ~ll~l~~~~~~ii~~~F~~d~~----f~~~l~~af~ 384 (394)
T d1ldja2 353 TVLDVHKKYNALVMSAFNNDAG----FVAALDKACG 384 (394)
T ss_dssp HHHHHHHHHHHHHHTTTTTCHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHH----HHHHHHHHHH
Confidence 4688999999999999999985 4444555555
No 10
>d1uz3a1 a.283.1.1 (A:13-102) Emsy {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.04 E-value=37 Score=20.42 Aligned_cols=43 Identities=21% Similarity=0.377 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 035983 6 MIAYRSLIRATRKSFAGDTVMLKESAKEIRKRFEESRHVTSPTEIQRL 53 (109)
Q Consensus 6 L~lYR~LlRa~r~~F~gD~~~l~aar~~iR~~F~~n~~~~d~~~I~e~ 53 (109)
+.||..+++|-+. +|| |..-+..+=++.+.--+.+|++.-.++
T Consensus 15 leAY~svl~Af~A--qg~---lsweke~lLt~LR~~L~IS~eeHr~el 57 (90)
T d1uz3a1 15 LEAYAGVISALRA--QGD---LTKEKKDLLGELSKVLSISTERHRAEV 57 (90)
T ss_dssp HHHHHHHHHHHHH--HSS---CCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHH--cCC---CCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 6799999999886 566 456666666666666677776654433
No 11
>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.89 E-value=52 Score=22.77 Aligned_cols=33 Identities=9% Similarity=0.109 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhh
Q 035983 4 EAMIAYRSLIRATRKSFAGDTVMLKESAKEIRKRFEE 40 (109)
Q Consensus 4 ~aL~lYR~LlRa~r~~F~gD~~~l~aar~~iR~~F~~ 40 (109)
..|.+|....+-...+|.+|.. +...+++.|+.
T Consensus 310 ~ll~l~~k~~~li~~~F~~d~~----f~~~l~~af~~ 342 (347)
T d2hyec2 310 DLLDFKDKVDHVIEVCFQKNER----FVNLMKESFET 342 (347)
T ss_dssp HHHHHHHHHHHHHHTTTTTCHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHH----HHHHHHHHHHH
Confidence 5688999999999999999985 44456666653
No 12
>d1kxpd3 a.126.1.1 (D:405-473) Vitamin D binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.28 E-value=61 Score=18.44 Aligned_cols=34 Identities=18% Similarity=0.398 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Q 035983 27 LKESAKEIRKRFEESRHVTSPTEIQRLLDEAREA 60 (109)
Q Consensus 27 l~aar~~iR~~F~~n~~~~d~~~I~e~i~~a~ev 60 (109)
+..++.++.+.|+....-..|+.+++++..--+-
T Consensus 11 Fte~kkkL~e~lr~k~P~as~~~l~~mVekrsdf 44 (69)
T d1kxpd3 11 FTEYKKKLAERLKAKLPDATPKELAKLVNKRSDF 44 (69)
T ss_dssp HHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhHH
Confidence 3578999999999888888999999998765443
No 13
>d1k28a1 b.40.8.1 (A:6-129) Tail-associated lysozyme gp5, N-terminal domain {Bacteriophage T4 [TaxId: 10665]}
Probab=24.18 E-value=24 Score=22.16 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=18.0
Q ss_pred CCCceEEeeccCCCCC-----cccCCChhh
Q 035983 75 ERGGYEVKPTQEHAGA-----TLDIPSEEI 99 (109)
Q Consensus 75 ~~~~y~l~i~~~h~~~-----~~elgdn~~ 99 (109)
.-|+|++||...|... ..+|+|++-
T Consensus 18 ~~GRvKVRI~G~H~~~~~~~~~~~lp~~dL 47 (124)
T d1k28a1 18 KLGRVRVRVVGLHPPQRAQGDVMGIPTEKL 47 (124)
T ss_dssp CSSCEEEEEBTTBCSCCSCCSSBCCCGGGS
T ss_pred cCCeEEEEEeeecCCCccccccccCCcccC
Confidence 3579999999999632 346777763
No 14
>d1ldda_ a.4.5.34 (A:) Anaphase promoting complex (APC) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.21 E-value=22 Score=20.63 Aligned_cols=24 Identities=21% Similarity=0.599 Sum_probs=20.3
Q ss_pred HHHHHHHHHhcceeeec--CCCceEE
Q 035983 58 REASRFISTMIVQAKLN--ERGGYEV 81 (109)
Q Consensus 58 ~ev~~~Lr~nVVQg~~~--~~~~y~l 81 (109)
.|...||-+.|-.|++. ++|.|+|
T Consensus 48 ~eL~~FL~~~V~e~kL~~v~gG~YkL 73 (74)
T d1ldda_ 48 QQLEGYLNTLADEGRLKYIANGSYEI 73 (74)
T ss_dssp HHHHHHHHHHHHTTSEECCTTTEEEE
T ss_pred HHHHHHHHHHHhcCceEEecCCEEee
Confidence 46778999999999885 7899987
No 15
>d1nz0a_ d.14.1.2 (A:) RNase P protein {Thermotoga maritima [TaxId: 2336]}
Probab=21.89 E-value=38 Score=19.94 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=22.1
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHHhhcCCC
Q 035983 16 TRKSFAGDTVMLKESAKEIRKRFEESRHV 44 (109)
Q Consensus 16 ~r~~F~gD~~~l~aar~~iR~~F~~n~~~ 44 (109)
+++ | |....++.+++.+|+.|+.+.+.
T Consensus 43 sKK-v-g~AV~RNriKR~lRe~~r~~~~~ 69 (109)
T d1nz0a_ 43 KRK-F-GKATRRNKLKRWVREIFRRNKGV 69 (109)
T ss_dssp CGG-G-CSHHHHHHHHHHHHHHHHHHTTT
T ss_pred ecc-c-hhHHHHHHHHHHHHHHHHHHHhh
Confidence 345 5 67889999999999999988764
Done!