BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035984
(104 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JUL|A Chain A, Nmr Structure Of Dream
Length = 256
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 4 RGSRLEKVKRIFQQFDTNRDGGLNREEMAALLVAV 38
RG+ EK+K F +D N+DG + +EEM A++ ++
Sbjct: 160 RGTVHEKLKWAFNLYDINKDGCITKEEMLAIMKSI 194
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 6 SRLEKVKRIFQQFDTNRDGGLNREE 30
+ LE V+R FQ+ D N+DG + +E
Sbjct: 210 APLEHVERFFQKMDRNQDGVVTIDE 234
>pdb|2NZ0|A Chain A, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
pdb|2NZ0|C Chain C, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
Length = 180
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 4 RGSRLEKVKRIFQQFDTNRDGGLNREEMAALLVAV 38
RG+ EK++ F +D N+DG +N+EEM ++ A+
Sbjct: 84 RGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAI 118
>pdb|2I2R|E Chain E, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|F Chain F, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|G Chain G, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|H Chain H, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|M Chain M, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|N Chain N, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|O Chain O, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|P Chain P, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
Length = 180
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 4 RGSRLEKVKRIFQQFDTNRDGGLNREEMAALLVAV 38
RG+ EK++ F +D N+DG +N+EEM ++ A+
Sbjct: 84 RGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAI 118
>pdb|1S6C|A Chain A, Crystal Structure Of The Complex Between Kchip1 And Kv4.2
N1-30
Length = 183
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 4 RGSRLEKVKRIFQQFDTNRDGGLNREEMAALLVAV 38
RG+ EK++ F +D N+DG +N+EEM ++ A+
Sbjct: 87 RGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAI 121
>pdb|1S1E|A Chain A, Crystal Structure Of Kv Channel-Interacting Protein 1
(Kchip-1)
Length = 224
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 4 RGSRLEKVKRIFQQFDTNRDGGLNREEMAALLVAV 38
RG+ EK++ F +D N+DG +N+EEM ++ A+
Sbjct: 120 RGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAI 154
>pdb|1TIZ|A Chain A, Solution Structure Of A Calmodulin-Like Calcium-Binding
Domain From Arabidopsis Thaliana
Length = 67
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 12 KRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEV 56
KR+F++FD N+DG L+ +E + +A +P F+ E I +E+
Sbjct: 4 KRVFEKFDKNKDGKLSLDEFREVALAFSPY--FTQEDIVKFFEEI 46
>pdb|2E6W|A Chain A, Solution Structure And Calcium Binding Properties Of Ef-
Hands 3 And 4 Of Calsenilin
Length = 100
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 5 GSRLEKVKRIFQQFDTNRDGGLNREEMAALLVAV 38
G+ EK+K F +D N+DG + +EEM A++ ++
Sbjct: 5 GTVHEKLKWAFNLYDINKDGYITKEEMLAIMKSI 38
>pdb|3DD4|A Chain A, Structural Basis Of Kchip4a Modulation Of Kv4.3 Slow
Inactivation
Length = 229
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 4 RGSRLEKVKRIFQQFDTNRDGGLNREEMAALLVAV 38
RG+ EK+ F +D N+DG + +EEM ++ A+
Sbjct: 133 RGTVQEKLNWAFNLYDINKDGYITKEEMLDIMKAI 167
>pdb|1TCF|A Chain A, Crystal Structure Of Calcium-Saturated Rabbit Skeletal
Troponin C
pdb|1TN4|A Chain A, Four Calcium Tnc
pdb|2TN4|A Chain A, Four Calcium Tnc
Length = 159
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 3 TRGSRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAII 53
+G E++ +F+ FD N DG ++ EE+A + A V +DE+I +++
Sbjct: 87 AKGKSEEELAELFRIFDRNADGYIDAEELAEIFRASGEHV--TDEEIESLM 135
>pdb|1A2X|A Chain A, Complex Of Troponin C With A 47 Residue (1-47) Fragment Of
Troponin I
Length = 159
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 3 TRGSRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAII 53
+G E++ F+ FD N DG ++ EE+A + A V +DE+I +++
Sbjct: 87 AKGKSEEELAECFRIFDRNADGYIDAEELAEIFRASGEHV--TDEEIESLM 135
>pdb|3J04|B Chain B, Em Structure Of The Heavy Meromyosin Subfragment Of
Chick Smooth Muscle Myosin With Regulatory Light Chain
In Phosphorylated State
pdb|3J04|E Chain E, Em Structure Of The Heavy Meromyosin Subfragment Of
Chick Smooth Muscle Myosin With Regulatory Light Chain
In Phosphorylated State
Length = 143
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 6 SRLEKVKRIFQQFDTNRDGGLNREEMAALLVAV--NPRVEF 44
S++++ K F D NRDG +++E++ +L ++ NP E+
Sbjct: 4 SQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEY 44
>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1,
Cgd3_920
pdb|3MWU|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Rm-1-95
pdb|3NCG|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Nm-Pp1
Length = 486
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 25/35 (71%), Gaps = 3/35 (8%)
Query: 1 MATRGSRLEKVKR---IFQQFDTNRDGGLNREEMA 32
MA++ + L++ K+ IF++ DTN DG L+R+E+
Sbjct: 320 MASKLTTLDETKQLTEIFRKLDTNNDGMLDRDELV 354
>pdb|2EHB|A Chain A, The Structure Of The C-Terminal Domain Of The Protein
Kinase Atsos2 Bound To The Calcium Sensor Atsos3
Length = 207
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 9 EKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVE--FSDEQINAIIDEVF 57
EKVK F+ +D + G + REE+ ++VA+ E S++ I ++D+ F
Sbjct: 111 EKVKFAFKLYDLRQTGFIEREELKEMVVALLHESELVLSEDMIEVMVDKAF 161
>pdb|1V1F|A Chain A, Structure Of The Arabidopsis Thaliana Sos3 Complexed With
Calcium(Ii) And Manganese(Ii) Ions
pdb|1V1G|A Chain A, Structure Of The Arabidopsis Thaliana Sos3 Complexed With
Calcium(Ii) Ion
Length = 222
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 9 EKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVE--FSDEQINAIIDEVF 57
EKVK F+ +D + G + REE+ ++VA+ E S++ I ++D+ F
Sbjct: 111 EKVKFAFKLYDLRQTGFIEREELKEMVVALLHESELVLSEDMIEVMVDKAF 161
>pdb|1FPW|A Chain A, Structure Of Yeast Frequenin
pdb|2JU0|A Chain A, Structure Of Yeast Frequenin Bound To Pdtins 4-Kinase
Length = 190
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 2 ATRGSRLEKVKRIFQQFDTNRDGGLNREEMAALLVAV 38
+RG+ EK+ F+ +D N DG + +EM ++ +V
Sbjct: 92 TSRGTLEEKLSWAFELYDLNHDGYITFDEMLTIVASV 128
>pdb|1BJF|A Chain A, Crystal Structure Of Recombinant Bovine Neurocalcin Delta
At 2.4 Angstroms
pdb|1BJF|B Chain B, Crystal Structure Of Recombinant Bovine Neurocalcin Delta
At 2.4 Angstroms
Length = 193
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 9 EKVKRIFQQFDTNRDGGLNREE 30
++ ++IF+Q DTNRDG L+ EE
Sbjct: 147 KRTEKIFRQMDTNRDGKLSLEE 168
>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420
Length = 504
Score = 29.3 bits (64), Expect = 0.59, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 9 EKVKRIFQQFDTNRDGGLNREEMAALL 35
E+++R F FDT++ G + +EE+A L
Sbjct: 435 ERLRRAFNLFDTDKSGKITKEELANLF 461
>pdb|2PMY|A Chain A, Ef-Hand Domain Of Human Rasef
pdb|2PMY|B Chain B, Ef-Hand Domain Of Human Rasef
Length = 91
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 5 GSRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPR 41
G L +++ +F D NR G L REE AL + R
Sbjct: 23 GEELARLRSVFAACDANRSGRLEREEFRALCTELRVR 59
>pdb|1G8I|A Chain A, Crystal Structure Of Human Frequenin (Neuronal Calcium
Sensor 1)
pdb|1G8I|B Chain B, Crystal Structure Of Human Frequenin (Neuronal Calcium
Sensor 1)
pdb|2LCP|A Chain A, Nmr Structure Of Calcium Loaded, Un-Myristoylated Human
Ncs-1
Length = 190
Score = 28.5 bits (62), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 24/38 (63%)
Query: 1 MATRGSRLEKVKRIFQQFDTNRDGGLNREEMAALLVAV 38
+ +RG+ EK++ F+ +D + DG + R EM ++ A+
Sbjct: 91 VTSRGTLDEKLRWAFKLYDLDNDGYITRNEMLDIVDAI 128
>pdb|3CTN|A Chain A, Structure Of Calcium-Saturated Cardiac Troponin C, Nmr,
30 Structures
Length = 76
Score = 28.5 bits (62), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 3 TRGSRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRV 42
++G E++ +F+ FD N DG ++ EE+ +L A +
Sbjct: 4 SKGKTEEELSDLFRMFDKNADGYIDLEELKIMLQATGETI 43
>pdb|1DTL|A Chain A, Crystal Structure Of Calcium-Saturated (3ca2+) Cardiac
Troponin C Complexed With The Calcium Sensitizer
Bepridil At 2.15 A Resolution
pdb|1J1D|A Chain A, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1D|D Chain D, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1E|A Chain A, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1E|D Chain D, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
Length = 161
Score = 28.5 bits (62), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 3 TRGSRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRV 42
++G E++ +F+ FD N DG ++ EE+ +L A +
Sbjct: 89 SKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQATGETI 128
>pdb|1FI5|A Chain A, Nmr Structure Of The C Terminal Domain Of Cardiac
Troponin C Bound To The N Terminal Domain Of Cardiac
Troponin I.
pdb|1SBJ|A Chain A, Nmr Structure Of The Mg2+-Loaded C Terminal Domain Of
Cardiac Troponin C Bound To The N Terminal Domain Of
Cardiac Troponin I
pdb|1SCV|A Chain A, Nmr Structure Of The C Terminal Domain Of Cardiac
Troponin C Bound To The N Terminal Domain Of Cardiac
Troponin I
Length = 81
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 3 TRGSRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRV 42
++G E++ +F+ FD N DG ++ EE+ +L A +
Sbjct: 9 SKGKTEEELSDLFRMFDKNADGYIDLEELKIMLQATGETI 48
>pdb|1LA0|A Chain A, Solution Structure Of Calcium Saturated Cardiac Troponin C
In The Troponin C-Troponin I Complex
Length = 161
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 3 TRGSRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRV 42
++G E++ +F+ FD N DG ++ EE+ +L A +
Sbjct: 89 SKGKTEEELSDLFRMFDKNADGYIDLEELKIMLQATGETI 128
>pdb|3HZT|A Chain A, Crystal Structure Of Toxoplasma Gondii Cdpk3,
Tgme49_105860
Length = 467
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 3/34 (8%)
Query: 1 MATRGSRLEKVK---RIFQQFDTNRDGGLNREEM 31
M ++ + LE+ K +IF+Q D N DG L+R+E+
Sbjct: 303 MGSKLTTLEETKELTQIFRQLDNNGDGQLDRKEL 336
>pdb|1AJ4|A Chain A, Structure Of Calcium-Saturated Cardiac Troponin C, Nmr, 1
Structure
Length = 161
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 3 TRGSRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRV 42
++G E++ +F+ FD N DG ++ EE+ +L A +
Sbjct: 89 SKGKTEEELSDLFRMFDKNADGYIDLEELKIMLQATGETI 128
>pdb|1OZS|A Chain A, C-Domain Of Human Cardiac Troponin C In Complex With The
Inhibitory Region Of Human Cardiac Troponin I
Length = 73
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 4 RGSRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRV 42
+G E++ +F+ FD N DG ++ EE+ +L A +
Sbjct: 2 KGKSEEELSDLFRMFDKNADGYIDLEELKIMLQATGETI 40
>pdb|3KHE|A Chain A, Crystal Structure Of The Calcium-Loaded Calmodulin-Like
Domain Of The Cdpk, 541.M00134 From Toxoplasma Gondii
pdb|3KHE|B Chain B, Crystal Structure Of The Calcium-Loaded Calmodulin-Like
Domain Of The Cdpk, 541.M00134 From Toxoplasma Gondii
Length = 191
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 18/82 (21%)
Query: 1 MATRGSRLEKVK---RIFQQFDTNRDGGLNREEMA----ALLVAVNPRV-EFSDEQINAI 52
M ++ + LE+ K +IF+Q D N DG L+R+E+ L+ V + QI A
Sbjct: 29 MGSKLTTLEETKELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAE 88
Query: 53 IDEVFRT----------YGEFI 64
+D + ++ Y EF+
Sbjct: 89 VDHILQSVDFDRNGYIEYSEFV 110
>pdb|3U9G|A Chain A, Crystal Structure Of The Zinc Finger Antiviral Protein
Length = 229
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 15 FQQFDTNRDGGLNREEMAALLVAVNP 40
FQ + GLN+EE+A LLV +P
Sbjct: 122 FQILKNHELSGLNQEELACLLVQSDP 147
>pdb|2D8D|A Chain A, Structure Of Chorismate Mutase (Form I) From Thermus
Thermophilus Hb8
pdb|2D8D|B Chain B, Structure Of Chorismate Mutase (Form I) From Thermus
Thermophilus Hb8
pdb|2D8E|A Chain A, Structure Of Chorismate Mutase (Form Ii) From Thermus
Thermophilus Hb8
Length = 90
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 11/64 (17%)
Query: 1 MATRGSRLEKVKRI-----FQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDE 55
++ RG ++++ R+ +D R+ EEM A L A NP F DE I + E
Sbjct: 23 LSERGRLVQEIGRLQTELGLPHYDPKRE-----EEMLAYLTAENP-GPFPDETIRKLFKE 76
Query: 56 VFRT 59
+F+
Sbjct: 77 IFKA 80
>pdb|1JBA|A Chain A, Unmyristoylated Gcap-2 With Three Calcium Ions Bound
Length = 204
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Query: 1 MATRGSRLEKVKRIFQQFDTNRDGGLNREEMAALLVAV-----NPRVEFSDEQ------I 49
+ RG+ K+K F+ +D +R+G ++R+E+ ++ ++ VE EQ
Sbjct: 87 LVLRGTLEHKLKWTFKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQGKLLTP 146
Query: 50 NAIIDEVFRTYGEFIDGEKGLT 71
++D +F E DG+ L
Sbjct: 147 EEVVDRIFLLVDENGDGQLSLN 168
>pdb|2ZFD|A Chain A, The Crystal Structure Of Plant Specific Calcium Binding
Protein Atcbl2 In Complex With The Regulatory Domain Of
Atcipk14
Length = 226
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 13 RIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDE 47
R+F FDT +G L EE A L +P D+
Sbjct: 89 RVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDK 123
>pdb|1UHN|A Chain A, The Crystal Structure Of The Calcium Binding Protein
Atcbl2 From Arabidopsis Thaliana
Length = 189
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 13 RIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDE 47
R+F FDT +G L EE A L +P D+
Sbjct: 58 RVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDK 92
>pdb|2W4A|B Chain B, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4G|B Chain B, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
pdb|2W4H|B Chain B, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
Length = 150
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 6 SRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDE 55
++++ K F D NRDG ++++++ A+ R+ +E+++A+I E
Sbjct: 9 TQIQDFKEAFTVIDQNRDGIIDKDDLRETFAAMG-RLNVKNEELDAMIKE 57
>pdb|1WLZ|A Chain A, Crystal Structure Of Djbp Fragment Which Was Obtained By
Limited Proteolysis
pdb|1WLZ|B Chain B, Crystal Structure Of Djbp Fragment Which Was Obtained By
Limited Proteolysis
pdb|1WLZ|C Chain C, Crystal Structure Of Djbp Fragment Which Was Obtained By
Limited Proteolysis
pdb|1WLZ|D Chain D, Crystal Structure Of Djbp Fragment Which Was Obtained By
Limited Proteolysis
Length = 105
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 6 SRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVE-FSDEQINAIIDEV 56
S + + F+ FDT + ++REE A+ N RV+ +DEQ + + +E+
Sbjct: 21 SHYHAITQEFENFDTMKTNTISREEFRAI---CNRRVQILTDEQFDRLWNEM 69
>pdb|2JT3|A Chain A, Solution Structure Of F153w Cardiac Troponin C
Length = 161
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 3 TRGSRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRV 42
++G E++ +F+ FD N DG ++ +E+ +L A +
Sbjct: 89 SKGKSEEELSDLFRMFDKNADGYIDLDELKIMLQATGETI 128
>pdb|2JT8|A Chain A, Solution Structure Of The F153-To-5-Flurotryptophan Mutant
Of Human Cardiac Troponin C
Length = 161
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 3 TRGSRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRV 42
++G E++ +F+ FD N DG ++ +E+ +L A +
Sbjct: 89 SKGKSEEELSDLFRMFDKNADGYIDLDELKIMLQATGETI 128
>pdb|2OPO|A Chain A, Crystal Structure Of The Calcium-Binding Pollen Allergen
Che A 3
pdb|2OPO|B Chain B, Crystal Structure Of The Calcium-Binding Pollen Allergen
Che A 3
pdb|2OPO|C Chain C, Crystal Structure Of The Calcium-Binding Pollen Allergen
Che A 3
pdb|2OPO|D Chain D, Crystal Structure Of The Calcium-Binding Pollen Allergen
Che A 3
Length = 86
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 12 KRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIID---EVFRTYGEFID--- 65
+RIF++FDTN DG ++ E+ L + ++ A ID + F ++ EF D
Sbjct: 14 ERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMAEIDTDGDGFISFDEFTDFAR 73
Query: 66 GEKGLTYD 73
+GL D
Sbjct: 74 ANRGLVKD 81
>pdb|5TNC|A Chain A, Refined Crystal Structure Of Troponin C From Turkey
Skeletal Muscle At 2.0 Angstroms Resolution
Length = 162
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 3 TRGSRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRV 42
+G E+++ F+ FD N DG ++ EE+ +L A V
Sbjct: 90 AKGKSEEELEDCFRIFDKNADGFIDIEELGEILRATGEHV 129
>pdb|1TNW|A Chain A, Nmr Solution Structure Of Calcium Saturated Skeletal
Muscle Troponin C
pdb|1TNX|A Chain A, Nmr Solution Structure Of Calcium Saturated Skeletal
Muscle Troponin C
Length = 162
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 3 TRGSRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRV 42
+G E++ F+ FD N DG ++ EE+ +L A V
Sbjct: 90 AKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHV 129
>pdb|1JC2|A Chain A, Complex Of The C-Domain Of Troponin C With Residues 1-40
Of Troponin I
Length = 76
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 3 TRGSRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRV 42
+G E++ F+ FD N DG ++ EE+ +L A V
Sbjct: 4 AKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHV 43
>pdb|1YTZ|C Chain C, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Activated State
pdb|1YV0|C Chain C, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Free State
pdb|1NCX|A Chain A, Troponin C
pdb|1NCY|A Chain A, Troponin-C, Complex With Manganese
pdb|1NCZ|A Chain A, Troponin C
pdb|1TOP|A Chain A, Structure Of Chicken Skeletal Muscle Troponin-C At 1.78
Angstroms Resolution
Length = 162
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 3 TRGSRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRV 42
+G E++ F+ FD N DG ++ EE+ +L A V
Sbjct: 90 AKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHV 129
>pdb|2W49|0 Chain 0, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|3 Chain 3, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|6 Chain 6, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|9 Chain 9, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4U|0 Chain 0, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|3 Chain 3, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|6 Chain 6, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|9 Chain 9, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
Length = 159
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 3 TRGSRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRV 42
+G E++ F+ FD N DG ++ EE+ +L A V
Sbjct: 87 AKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHV 126
>pdb|2LVI|A Chain A, Solution Structure Of Apo-phl P 7
pdb|2LVJ|A Chain A, Solution Structure Of Hemi-mg-bound Phl P 7
pdb|2LVK|A Chain A, Solution Structure Of Ca-bound Phl P 7
Length = 77
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 9 EKVKRIFQQFDTNRDGGLNREEMAALL 35
+ ++RIF++FDTN DG ++ E+ L
Sbjct: 2 DDMERIFKRFDTNGDGKISLSELTDAL 28
>pdb|1K9U|A Chain A, Crystal Structure Of The Calcium-Binding Pollen Allergen
Phl P 7 (Polcalcin) At 1.75 Angstroem
pdb|1K9U|B Chain B, Crystal Structure Of The Calcium-Binding Pollen Allergen
Phl P 7 (Polcalcin) At 1.75 Angstroem
Length = 78
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 9 EKVKRIFQQFDTNRDGGLNREEMAALL 35
+ ++RIF++FDTN DG ++ E+ L
Sbjct: 3 DDMERIFKRFDTNGDGKISLSELTDAL 29
>pdb|4TNC|A Chain A, Refined Structure Of Chicken Skeletal Muscle Troponin C In
The Two-Calcium State At 2-Angstroms Resolution
Length = 162
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 3 TRGSRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRV 42
+G E++ F+ FD N DG ++ EE+ +L A V
Sbjct: 90 AKGKSEEELADCFRIFDKNADGFIDIEELGEILRATGEHV 129
>pdb|1IH0|A Chain A, Structure Of The C-Domain Of Human Cardiac Troponin C In
Complex With Ca2+ Sensitizer Emd 57033
Length = 71
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 9 EKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRV 42
E++ +F+ FD N DG ++ EE+ +L A +
Sbjct: 5 EELSDLFRMFDKNADGYIDLEELKIMLQATGETI 38
>pdb|1NYA|A Chain A, Nmr Solution Structure Of Calerythrin, An Ef-hand Calcium-
Binding Protein
Length = 176
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 11 VKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAI 52
VK I D N DG +N +E AA L A+ + E N +
Sbjct: 104 VKGIVGMCDKNADGQINADEFAAWLTALGMSKAEAAEAFNQV 145
>pdb|1S3P|A Chain A, Crystal Structure Of Rat Alpha-parvalbumin S55d/e59d
Mutant
Length = 109
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 8/27 (29%), Positives = 19/27 (70%)
Query: 9 EKVKRIFQQFDTNRDGGLNREEMAALL 35
+ VK++F D ++DG ++ +E+ ++L
Sbjct: 41 DDVKKVFHILDKDKDGFIDEDELGSIL 67
>pdb|2JNX|A Chain A, Nmr Derived Solution Structure Of An Ef-Hand Calcium
Binding Protein From Entamoeba Histolytica
Length = 134
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 14 IFQQFDTNRDGGLNREEMAALLVAVNP 40
+F+Q D N DG ++ EE+ A + + P
Sbjct: 5 LFKQLDANGDGSVSYEEVKAFVSSKRP 31
>pdb|2MYS|B Chain B, Myosin Subfragment-1, Alpha Carbon Coordinates Only For
The Two Light Chains
pdb|1I84|U Chain U, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C
Alphas Provided For Regulatory Light Chain. Only
Backbone Atoms Provided For S2 Fragment.
pdb|1I84|Z Chain Z, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C
Alphas Provided For Regulatory Light Chain. Only
Backbone Atoms Provided For S2 Fragment
Length = 166
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 6 SRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEV 56
+ +E K F D N DG ++++++ A+ R+ +E+++A+I E
Sbjct: 22 TEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMG-RLNVKNEELDAMIKEA 71
>pdb|1KK8|C Chain C, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 154
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 15/76 (19%)
Query: 8 LEKVKRIFQQFD--TNRDGGLNREEMAALL--VAVNPRVEFSDEQINAIIDEVFRTYGEF 63
++ +K +F+ FD RDG ++ ++ + + +NPR E +VF G
Sbjct: 8 IDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNE-----------DVFAVGGTH 56
Query: 64 IDGEKGLTYDGLLRTY 79
GEK L ++ L Y
Sbjct: 57 KMGEKSLPFEEFLPAY 72
>pdb|1WDC|C Chain C, Scallop Myosin Regulatory Domain
pdb|1B7T|Z Chain Z, Myosin Digested By Papain
pdb|1KK7|Z Chain Z, Scallop Myosin In The Near Rigor Conformation
pdb|1L2O|C Chain C, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|C Chain C, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|C Chain C, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
pdb|1QVI|Z Chain Z, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility
And Function In The Head
pdb|1S5G|Z Chain Z, Structure Of Scallop Myosin S1 Reveals A Novel
Nucleotide Conformation
pdb|1SR6|C Chain C, Structure Of Nucleotide-free Scallop Myosin S1
pdb|3JVT|C Chain C, Calcium-Bound Scallop Myosin Regulatory Domain (Lever
Arm) With Reconstituted Complete Light Chains
Length = 156
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 15/76 (19%)
Query: 8 LEKVKRIFQQFD--TNRDGGLNREEMAALL--VAVNPRVEFSDEQINAIIDEVFRTYGEF 63
++ +K +F+ FD RDG ++ ++ + + +NPR E +VF G
Sbjct: 8 IDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNE-----------DVFAVGGTH 56
Query: 64 IDGEKGLTYDGLLRTY 79
GEK L ++ L Y
Sbjct: 57 KMGEKSLPFEEFLPAY 72
>pdb|2KDH|A Chain A, The Solution Structure Of Human Cardiac Troponin C In
Complex With The Green Tea Polyphenol; (-)-
Epigallocatechin-3-Gallate
pdb|2L98|A Chain A, Structure Of Trans-Resveratrol In Complex With The
Cardiac Regulatory Protein Troponin C
Length = 72
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 5 GSRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRV 42
G E++ +F+ FD N DG ++ +E+ +L A +
Sbjct: 2 GKSEEELSDLFRMFDKNADGYIDLDELKIMLQATGETI 39
>pdb|1SCM|C Chain C, Structure Of The Regulatory Domain Of Scallop Myosin At
2.8 Angstroms Resolution
Length = 149
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 15/76 (19%)
Query: 8 LEKVKRIFQQFD--TNRDGGLNREEMAALL--VAVNPRVEFSDEQINAIIDEVFRTYGEF 63
++ +K +F+ FD RDG ++ ++ + + +NPR E +VF G
Sbjct: 5 IDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNE-----------DVFAVGGTH 53
Query: 64 IDGEKGLTYDGLLRTY 79
GEK L ++ L Y
Sbjct: 54 KMGEKSLPFEEFLPAY 69
>pdb|2W4T|Z Chain Z, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|Z Chain Z, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|Z Chain Z, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 151
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 15/76 (19%)
Query: 8 LEKVKRIFQQFD--TNRDGGLNREEMAALL--VAVNPRVEFSDEQINAIIDEVFRTYGEF 63
++ +K +F+ FD RDG ++ ++ + + +NPR E +VF G
Sbjct: 5 IDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNE-----------DVFAVGGTH 53
Query: 64 IDGEKGLTYDGLLRTY 79
GEK L ++ L Y
Sbjct: 54 KMGEKSLPFEEFLPAY 69
>pdb|2EC6|C Chain C, Placopecten Striated Muscle Myosin Ii
Length = 156
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 15/76 (19%)
Query: 8 LEKVKRIFQQFD--TNRDGGLNREEMAALL--VAVNPRVEFSDEQINAIIDEVFRTYGEF 63
++ +K +F+ FD RDG ++ ++ + + +NPR E +VF G
Sbjct: 8 IDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNE-----------DVFAVGGTH 56
Query: 64 IDGEKGLTYDGLLRTY 79
GEK L ++ L Y
Sbjct: 57 KMGEKSLPFEEFLPAY 72
>pdb|2OS8|C Chain C, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of
This Allosteric Motor
pdb|2OTG|C Chain C, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of
This Allosteric Motor
Length = 157
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 15/76 (19%)
Query: 8 LEKVKRIFQQFD--TNRDGGLNREEMAALL--VAVNPRVEFSDEQINAIIDEVFRTYGEF 63
++ +K +F+ FD RDG ++ ++ + + +NPR E +VF G
Sbjct: 9 IDDLKEVFELFDFWDGRDGAVDAFKIGDVCRCLGINPRNE-----------DVFAVGGTH 57
Query: 64 IDGEKGLTYDGLLRTY 79
GEK L ++ L Y
Sbjct: 58 KMGEKSLPFEEFLPAY 73
>pdb|1M8Q|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|T Chain T, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
Length = 145
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 6 SRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDE 55
+ +E K F D N DG ++++++ A+ R+ +E+++A+I E
Sbjct: 4 TEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMG-RLNVKNEELDAMIKE 52
>pdb|1DFK|Z Chain Z, Nucleotide-Free Scallop Myosin S1-Near Rigor State
pdb|1DFL|Z Chain Z, Scallop Myosin S1 Complexed With
Mgadp:vanadate-Transition State
pdb|1DFL|X Chain X, Scallop Myosin S1 Complexed With
Mgadp:vanadate-Transition State
Length = 152
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 15/76 (19%)
Query: 8 LEKVKRIFQQFD--TNRDGGLNREEMAALL--VAVNPRVEFSDEQINAIIDEVFRTYGEF 63
++ +K +F+ FD RDG ++ ++ + + +NPR E +VF G
Sbjct: 6 IDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNE-----------DVFAVGGTH 54
Query: 64 IDGEKGLTYDGLLRTY 79
GEK L ++ L Y
Sbjct: 55 KMGEKSLPFEEFLPAY 70
>pdb|3PN7|C Chain C, Visualizing New Hinges And A Potential Major Source Of
Compliance In The Lever Arm Of Myosin
pdb|3PN7|F Chain F, Visualizing New Hinges And A Potential Major Source Of
Compliance In The Lever Arm Of Myosin
pdb|3TS5|C Chain C, Crystal Structure Of A Light Chain Domain Of Scallop
Smooth Muscle Myosin
pdb|3TS5|F Chain F, Crystal Structure Of A Light Chain Domain Of Scallop
Smooth Muscle Myosin
pdb|3TUY|C Chain C, Phosphorylated Light Chain Domain Of Scallop Smooth
Muscle Myosin
pdb|3TUY|F Chain F, Phosphorylated Light Chain Domain Of Scallop Smooth
Muscle Myosin
Length = 156
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 15/76 (19%)
Query: 8 LEKVKRIFQQFD--TNRDGGLNREEMAALL--VAVNPRVEFSDEQINAIIDEVFRTYGEF 63
++ +K +F+ FD RDG ++ ++ + + +NPR E +VF G
Sbjct: 8 IDDLKEVFELFDFWDGRDGAVDAFKIGDVCRCLGINPRNE-----------DVFAVGGTH 56
Query: 64 IDGEKGLTYDGLLRTY 79
GEK L ++ L Y
Sbjct: 57 KMGEKSLPFEEFLPAY 72
>pdb|2JT0|A Chain A, Solution Structure Of F104w Cardiac Troponin C
Length = 161
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/40 (25%), Positives = 23/40 (57%)
Query: 3 TRGSRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRV 42
++G E++ +F+ +D N DG ++ +E+ +L A +
Sbjct: 89 SKGKSEEELSDLFRMWDKNADGYIDLDELKIMLQATGETI 128
>pdb|1H4B|A Chain A, Solution Structure Of The Birch Pollen Allergen Bet V 4
Length = 84
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 12 KRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIID---EVFRTYGEFID 65
+RIF++FD N DG ++ E+ L + + + A ID + F ++ EF D
Sbjct: 12 ERIFKRFDANGDGKISAAELGEALKTLGSITPDEVKHMMAEIDTDGDGFISFQEFTD 68
>pdb|2L2E|A Chain A, Solution Nmr Structure Of Myristoylated Ncs1p In Apo Form
Length = 190
Score = 25.0 bits (53), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 9 EKVKRIFQQFDTNRDGGLNREEMA 32
++V +IF D N+DG L EE
Sbjct: 147 KRVNKIFNMMDKNKDGQLTLEEFC 170
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.136 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,540,057
Number of Sequences: 62578
Number of extensions: 85315
Number of successful extensions: 456
Number of sequences better than 100.0: 79
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 364
Number of HSP's gapped (non-prelim): 108
length of query: 104
length of database: 14,973,337
effective HSP length: 69
effective length of query: 35
effective length of database: 10,655,455
effective search space: 372940925
effective search space used: 372940925
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)