Query 035984
Match_columns 104
No_of_seqs 101 out of 1409
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 08:15:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035984.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035984hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13499 EF-hand_7: EF-hand do 99.5 8.2E-14 1.8E-18 78.6 7.9 66 10-79 1-66 (66)
2 COG5126 FRQ1 Ca2+-binding prot 99.5 8.1E-14 1.8E-18 91.4 7.8 69 4-80 87-155 (160)
3 cd05022 S-100A13 S-100A13: S-1 99.4 8.9E-13 1.9E-17 79.1 6.7 66 7-80 6-74 (89)
4 KOG0027 Calmodulin and related 99.4 3.7E-12 8E-17 82.8 7.5 65 8-80 84-148 (151)
5 cd05027 S-100B S-100B: S-100B 99.4 6.1E-12 1.3E-16 75.3 7.7 66 7-80 6-78 (88)
6 cd05031 S-100A10_like S-100A10 99.3 2.8E-11 6.1E-16 73.0 7.4 67 8-80 7-78 (94)
7 KOG0027 Calmodulin and related 99.3 4.1E-11 8.9E-16 77.9 7.9 72 5-84 4-75 (151)
8 KOG0034 Ca2+/calmodulin-depend 99.2 7.8E-11 1.7E-15 79.3 9.1 75 3-80 98-174 (187)
9 cd05026 S-100Z S-100Z: S-100Z 99.2 5.8E-11 1.2E-15 71.7 7.7 68 7-80 8-80 (93)
10 cd05025 S-100A1 S-100A1: S-100 99.2 6.3E-11 1.4E-15 71.1 7.7 67 8-80 8-79 (92)
11 KOG0028 Ca2+-binding protein ( 99.2 4E-11 8.7E-16 78.2 7.2 68 4-80 102-169 (172)
12 cd00052 EH Eps15 homology doma 99.2 7E-11 1.5E-15 66.3 6.6 59 12-80 2-60 (67)
13 smart00027 EH Eps15 homology d 99.2 1.1E-10 2.4E-15 70.6 7.8 65 6-80 7-71 (96)
14 cd00213 S-100 S-100: S-100 dom 99.2 9.8E-11 2.1E-15 69.6 7.3 68 7-80 6-78 (88)
15 cd05029 S-100A6 S-100A6: S-100 99.2 1.4E-10 3E-15 69.4 7.6 66 7-80 8-78 (88)
16 cd00051 EFh EF-hand, calcium b 99.2 2.7E-10 5.8E-15 61.7 7.0 61 11-79 2-62 (63)
17 COG5126 FRQ1 Ca2+-binding prot 99.1 5.8E-10 1.3E-14 73.3 8.9 73 6-87 17-89 (160)
18 KOG0044 Ca2+ sensor (EF-Hand s 99.1 1.8E-10 3.9E-15 77.8 5.0 77 2-80 93-174 (193)
19 KOG0030 Myosin essential light 99.1 5.8E-10 1.3E-14 71.4 6.4 90 4-101 6-99 (152)
20 PTZ00183 centrin; Provisional 99.1 1.3E-09 2.9E-14 70.1 8.0 67 6-80 87-153 (158)
21 PF13833 EF-hand_8: EF-hand do 99.1 1E-09 2.2E-14 59.5 6.3 51 22-80 1-52 (54)
22 PTZ00184 calmodulin; Provision 99.0 1.5E-09 3.3E-14 68.9 7.9 67 6-80 81-147 (149)
23 PF14658 EF-hand_9: EF-hand do 99.0 1.1E-09 2.4E-14 61.9 6.1 60 13-80 2-63 (66)
24 cd05023 S-100A11 S-100A11: S-1 99.0 1.1E-09 2.4E-14 65.7 6.5 69 6-80 6-79 (89)
25 cd00252 SPARC_EC SPARC_EC; ext 99.0 1.4E-09 3.1E-14 68.1 7.1 62 7-80 46-107 (116)
26 KOG0031 Myosin regulatory ligh 99.0 2E-09 4.3E-14 70.0 7.8 74 4-85 96-169 (171)
27 KOG0028 Ca2+-binding protein ( 99.0 3.5E-09 7.6E-14 69.2 7.8 75 6-88 30-104 (172)
28 PTZ00183 centrin; Provisional 99.0 9.6E-09 2.1E-13 66.1 9.6 68 6-81 14-81 (158)
29 PTZ00184 calmodulin; Provision 98.9 1.4E-08 3E-13 64.5 7.8 68 6-81 8-75 (149)
30 cd05030 calgranulins Calgranul 98.8 1.7E-08 3.6E-13 60.3 6.3 66 7-80 6-78 (88)
31 KOG0031 Myosin regulatory ligh 98.8 7.5E-08 1.6E-12 62.8 8.4 73 5-89 28-100 (171)
32 KOG0041 Predicted Ca2+-binding 98.7 8.9E-08 1.9E-12 64.9 8.1 72 7-86 97-169 (244)
33 PF00036 EF-hand_1: EF hand; 98.7 3.7E-08 8E-13 47.2 3.5 29 10-38 1-29 (29)
34 KOG0030 Myosin essential light 98.6 1.3E-07 2.7E-12 60.8 6.2 63 8-79 87-149 (152)
35 KOG0037 Ca2+-binding protein, 98.6 3.2E-07 7E-12 62.7 8.0 63 10-80 125-187 (221)
36 KOG0036 Predicted mitochondria 98.5 3.3E-07 7.1E-12 67.8 7.2 66 7-80 80-145 (463)
37 PF13405 EF-hand_6: EF-hand do 98.5 1.3E-07 2.8E-12 45.8 3.5 30 10-39 1-31 (31)
38 KOG0044 Ca2+ sensor (EF-Hand s 98.4 1E-06 2.2E-11 59.7 6.6 72 2-81 57-128 (193)
39 KOG0038 Ca2+-binding kinase in 98.4 1.3E-06 2.8E-11 56.8 6.5 73 5-80 104-176 (189)
40 PLN02964 phosphatidylserine de 98.4 1.6E-06 3.4E-11 67.8 7.7 63 11-81 181-243 (644)
41 KOG0036 Predicted mitochondria 98.3 1.6E-06 3.4E-11 64.3 6.1 83 5-95 10-93 (463)
42 KOG0377 Protein serine/threoni 98.3 3.9E-06 8.4E-11 62.9 7.0 65 10-80 548-614 (631)
43 PLN02964 phosphatidylserine de 98.2 7.8E-06 1.7E-10 64.0 8.7 64 6-81 140-207 (644)
44 PF14788 EF-hand_10: EF hand; 98.2 6.2E-06 1.3E-10 44.3 5.5 48 25-80 1-48 (51)
45 cd05024 S-100A10 S-100A10: A s 98.2 2E-05 4.4E-10 47.3 7.7 67 7-80 6-75 (91)
46 PF13202 EF-hand_5: EF hand; P 98.1 3.1E-06 6.8E-11 39.0 3.0 25 11-35 1-25 (25)
47 PF12763 EF-hand_4: Cytoskelet 98.1 3.3E-05 7.1E-10 47.5 8.1 65 5-80 6-70 (104)
48 KOG0037 Ca2+-binding protein, 98.1 3.2E-05 6.9E-10 53.0 7.6 66 8-80 56-121 (221)
49 PF00036 EF-hand_1: EF hand; 98.0 8.1E-06 1.8E-10 39.0 3.1 27 48-80 1-27 (29)
50 PRK12309 transaldolase/EF-hand 98.0 2E-05 4.3E-10 58.6 6.3 54 6-80 331-384 (391)
51 KOG4223 Reticulocalbin, calume 97.8 3.7E-05 8E-10 55.4 5.2 73 11-90 165-238 (325)
52 KOG0046 Ca2+-binding actin-bun 97.8 9.4E-05 2E-09 56.5 6.4 67 8-81 18-85 (627)
53 KOG0040 Ca2+-binding actin-bun 97.7 8.1E-05 1.8E-09 62.6 6.2 67 8-80 2252-2323(2399)
54 PF10591 SPARC_Ca_bdg: Secrete 97.7 1.5E-05 3.3E-10 49.7 1.7 61 7-77 52-112 (113)
55 PF09279 EF-hand_like: Phospho 97.5 0.0011 2.4E-08 38.6 7.6 73 10-85 1-73 (83)
56 KOG4065 Uncharacterized conser 97.4 0.0015 3.3E-08 41.0 7.6 63 13-77 71-141 (144)
57 smart00054 EFh EF-hand, calciu 97.4 0.00023 5E-09 32.0 2.9 27 11-37 2-28 (29)
58 KOG0034 Ca2+/calmodulin-depend 97.4 0.0011 2.3E-08 44.9 6.8 63 6-80 30-94 (187)
59 PF13833 EF-hand_8: EF-hand do 97.3 0.00066 1.4E-08 36.2 4.1 32 6-37 22-53 (54)
60 PF13202 EF-hand_5: EF hand; P 97.2 0.00054 1.2E-08 31.4 3.0 25 49-79 1-25 (25)
61 KOG4223 Reticulocalbin, calume 97.2 0.00085 1.8E-08 48.5 4.9 70 3-80 71-140 (325)
62 PF13405 EF-hand_6: EF-hand do 97.0 0.0017 3.7E-08 30.9 3.6 27 48-80 1-27 (31)
63 KOG2643 Ca2+ binding protein, 96.8 0.0018 3.9E-08 48.7 4.3 65 11-80 235-313 (489)
64 PF13499 EF-hand_7: EF-hand do 96.8 0.0031 6.6E-08 34.8 3.9 28 8-35 39-66 (66)
65 KOG4251 Calcium binding protei 96.7 0.0015 3.2E-08 46.1 2.7 68 5-80 97-167 (362)
66 KOG3555 Ca2+-binding proteogly 96.2 0.013 2.9E-07 43.1 5.3 61 8-80 249-309 (434)
67 KOG4666 Predicted phosphate ac 96.1 0.013 2.8E-07 42.9 4.9 66 6-80 293-358 (412)
68 smart00054 EFh EF-hand, calciu 96.1 0.008 1.7E-07 26.5 2.5 26 49-80 2-27 (29)
69 KOG2243 Ca2+ release channel ( 95.9 0.016 3.6E-07 49.5 5.0 63 14-85 4062-4124(5019)
70 KOG0042 Glycerol-3-phosphate d 95.8 0.038 8.2E-07 43.2 6.3 67 7-81 591-657 (680)
71 KOG0169 Phosphoinositide-speci 95.7 0.071 1.5E-06 42.7 7.6 73 6-86 133-205 (746)
72 KOG2643 Ca2+ binding protein, 95.5 0.16 3.4E-06 38.7 8.6 82 7-94 316-399 (489)
73 cd05026 S-100Z S-100Z: S-100Z 95.5 0.036 7.7E-07 33.1 4.2 33 7-39 51-83 (93)
74 PF14788 EF-hand_10: EF hand; 95.5 0.038 8.3E-07 29.7 3.8 30 9-38 21-50 (51)
75 cd00252 SPARC_EC SPARC_EC; ext 95.4 0.032 6.9E-07 34.9 4.0 30 7-36 78-107 (116)
76 KOG2562 Protein phosphatase 2 95.4 0.03 6.5E-07 42.6 4.4 59 15-80 284-342 (493)
77 cd05031 S-100A10_like S-100A10 95.3 0.016 3.5E-07 34.5 2.4 33 7-39 49-81 (94)
78 cd05030 calgranulins Calgranul 95.3 0.039 8.4E-07 32.6 4.0 32 8-39 50-81 (88)
79 smart00027 EH Eps15 homology d 95.3 0.03 6.5E-07 33.4 3.4 46 5-50 40-88 (96)
80 KOG0377 Protein serine/threoni 95.1 0.12 2.6E-06 39.5 6.9 32 7-38 462-493 (631)
81 cd05022 S-100A13 S-100A13: S-1 95.0 0.055 1.2E-06 32.2 4.0 31 9-39 47-77 (89)
82 cd05025 S-100A1 S-100A1: S-100 94.9 0.066 1.4E-06 31.7 4.3 33 7-39 50-82 (92)
83 cd05029 S-100A6 S-100A6: S-100 94.9 0.066 1.4E-06 31.7 4.2 33 7-39 49-81 (88)
84 cd00052 EH Eps15 homology doma 94.8 0.068 1.5E-06 29.1 4.0 34 5-38 29-62 (67)
85 KOG3866 DNA-binding protein of 94.7 0.059 1.3E-06 39.4 4.2 84 14-99 249-343 (442)
86 KOG1029 Endocytic adaptor prot 94.6 0.068 1.5E-06 43.3 4.6 65 3-77 189-253 (1118)
87 cd05023 S-100A11 S-100A11: S-1 94.4 0.1 2.2E-06 31.0 4.2 32 8-39 51-82 (89)
88 KOG0751 Mitochondrial aspartat 94.3 0.18 3.9E-06 39.1 6.2 68 4-80 103-174 (694)
89 PF08414 NADPH_Ox: Respiratory 94.2 0.18 3.9E-06 30.8 4.9 66 9-84 30-95 (100)
90 KOG4251 Calcium binding protei 94.2 0.12 2.6E-06 36.8 4.7 60 10-77 282-341 (362)
91 PF14658 EF-hand_9: EF-hand do 94.2 0.12 2.6E-06 29.2 3.9 34 4-37 30-64 (66)
92 cd00051 EFh EF-hand, calcium b 94.1 0.1 2.2E-06 27.0 3.5 30 6-35 33-62 (63)
93 PF05517 p25-alpha: p25-alpha 94.0 0.6 1.3E-05 30.5 7.5 63 13-81 6-69 (154)
94 KOG0035 Ca2+-binding actin-bun 93.9 0.39 8.4E-06 39.5 7.6 83 8-95 746-830 (890)
95 KOG4578 Uncharacterized conser 93.8 0.024 5.2E-07 41.6 0.7 64 10-80 334-397 (421)
96 cd00213 S-100 S-100: S-100 dom 93.6 0.18 3.8E-06 29.4 4.2 33 7-39 49-81 (88)
97 PF12763 EF-hand_4: Cytoskelet 93.6 0.11 2.3E-06 31.9 3.2 34 5-38 39-72 (104)
98 KOG1955 Ral-GTPase effector RA 93.5 0.24 5.2E-06 38.4 5.6 63 8-80 230-292 (737)
99 PF09069 EF-hand_3: EF-hand; 93.4 0.39 8.4E-06 28.8 5.4 68 8-80 2-74 (90)
100 KOG2562 Protein phosphatase 2 93.2 0.22 4.7E-06 38.1 5.0 63 9-77 351-420 (493)
101 cd05027 S-100B S-100B: S-100B 93.0 0.26 5.6E-06 29.2 4.2 33 7-39 49-81 (88)
102 cd05024 S-100A10 S-100A10: A s 91.6 0.4 8.6E-06 28.8 3.8 33 7-39 46-78 (91)
103 KOG4666 Predicted phosphate ac 91.5 0.52 1.1E-05 34.8 5.0 72 9-87 259-330 (412)
104 KOG1707 Predicted Ras related/ 90.7 0.39 8.4E-06 37.8 3.9 64 7-80 313-376 (625)
105 PRK12309 transaldolase/EF-hand 89.1 0.53 1.2E-05 35.3 3.5 27 11-37 359-385 (391)
106 KOG2871 Uncharacterized conser 85.4 1.5 3.1E-05 33.0 3.9 41 6-48 306-346 (449)
107 PLN02222 phosphoinositide phos 85.3 8.5 0.00018 30.6 8.2 69 7-82 23-91 (581)
108 cd07313 terB_like_2 tellurium 84.1 2.8 6E-05 24.9 4.2 53 22-80 12-64 (104)
109 KOG0040 Ca2+-binding actin-bun 84.1 3 6.5E-05 36.8 5.5 58 1-58 2288-2345(2399)
110 KOG0751 Mitochondrial aspartat 83.5 6.7 0.00015 30.8 6.8 55 17-81 82-136 (694)
111 PF08726 EFhand_Ca_insen: Ca2+ 83.1 1.7 3.8E-05 24.7 2.8 28 8-36 5-32 (69)
112 KOG3449 60S acidic ribosomal p 83.0 6.1 0.00013 24.6 5.3 45 11-57 3-47 (112)
113 PLN02228 Phosphoinositide phos 82.9 11 0.00024 29.8 8.0 74 5-82 20-93 (567)
114 PLN02223 phosphoinositide phos 81.7 13 0.00028 29.3 7.8 74 7-81 14-92 (537)
115 PF09068 EF-hand_2: EF hand; 80.8 2.4 5.2E-05 26.9 3.1 30 9-38 97-126 (127)
116 KOG1707 Predicted Ras related/ 80.0 11 0.00024 30.1 6.9 69 8-80 194-264 (625)
117 PLN02952 phosphoinositide phos 79.0 20 0.00044 28.6 8.2 74 7-81 36-110 (599)
118 KOG0169 Phosphoinositide-speci 78.8 18 0.0004 29.6 7.9 73 10-85 206-278 (746)
119 PF12174 RST: RCD1-SRO-TAF4 (R 78.4 2.2 4.8E-05 24.3 2.2 37 42-84 20-56 (70)
120 PLN02230 phosphoinositide phos 77.5 24 0.00052 28.2 8.2 74 7-81 27-102 (598)
121 PF14513 DAG_kinase_N: Diacylg 76.8 3.9 8.5E-05 26.4 3.2 56 22-81 4-60 (138)
122 PF08976 DUF1880: Domain of un 76.1 2.1 4.5E-05 26.9 1.7 31 44-80 4-34 (118)
123 PF05042 Caleosin: Caleosin re 75.7 21 0.00047 24.0 7.4 66 8-80 95-165 (174)
124 KOG1955 Ral-GTPase effector RA 72.2 4.4 9.5E-05 31.8 2.9 33 6-38 262-294 (737)
125 PLN02952 phosphoinositide phos 69.6 21 0.00046 28.5 6.3 57 22-85 13-69 (599)
126 KOG0998 Synaptic vesicle prote 68.2 2.2 4.8E-05 35.2 0.7 61 7-77 281-341 (847)
127 KOG0039 Ferric reductase, NADH 68.0 15 0.00033 29.5 5.3 72 2-80 11-88 (646)
128 KOG0038 Ca2+-binding kinase in 67.3 12 0.00026 24.8 3.8 61 9-81 74-136 (189)
129 KOG1265 Phospholipase C [Lipid 66.7 36 0.00078 28.8 7.1 70 9-80 221-298 (1189)
130 PTZ00373 60S Acidic ribosomal 66.3 29 0.00063 21.6 5.3 44 12-57 6-49 (112)
131 PF05042 Caleosin: Caleosin re 66.3 10 0.00022 25.5 3.4 30 10-39 8-37 (174)
132 PF00404 Dockerin_1: Dockerin 66.3 10 0.00022 16.4 2.8 16 19-34 1-16 (21)
133 COG2255 RuvB Holliday junction 64.6 55 0.0012 24.2 7.2 86 11-102 224-310 (332)
134 COG5611 Predicted nucleic-acid 62.4 37 0.0008 21.5 6.5 62 10-77 22-83 (130)
135 KOG0041 Predicted Ca2+-binding 61.8 19 0.00042 25.0 4.2 38 51-95 103-140 (244)
136 KOG4347 GTPase-activating prot 61.8 10 0.00022 30.5 3.2 32 8-39 554-585 (671)
137 PF07879 PHB_acc_N: PHB/PHA ac 60.3 29 0.00062 19.5 4.4 41 16-56 10-58 (64)
138 PF11829 DUF3349: Protein of u 60.1 31 0.00066 20.9 4.4 31 26-58 20-50 (96)
139 cd08324 CARD_NOD1_CARD4 Caspas 58.6 36 0.00079 20.1 5.2 58 10-80 13-71 (85)
140 cd05833 Ribosomal_P2 Ribosomal 57.3 44 0.00094 20.6 5.3 43 13-57 5-47 (109)
141 PF11116 DUF2624: Protein of u 56.7 40 0.00086 20.0 6.8 53 24-84 13-65 (85)
142 PF07308 DUF1456: Protein of u 56.0 31 0.00066 19.4 3.8 30 26-57 14-43 (68)
143 PRK00523 hypothetical protein; 55.9 37 0.00081 19.5 4.1 34 22-57 36-69 (72)
144 PF03672 UPF0154: Uncharacteri 54.0 38 0.00082 19.0 4.2 33 23-57 29-61 (64)
145 KOG0506 Glutaminase (contains 53.8 65 0.0014 25.4 6.2 65 14-80 91-157 (622)
146 TIGR03573 WbuX N-acetyl sugar 51.8 53 0.0011 24.1 5.4 43 23-79 300-342 (343)
147 smart00222 Sec7 Sec7 domain. D 51.1 53 0.0012 21.9 5.0 35 23-57 149-183 (187)
148 KOG4004 Matricellular protein 50.5 12 0.00025 26.0 1.7 26 9-34 222-247 (259)
149 cd00171 Sec7 Sec7 domain; Doma 50.2 61 0.0013 21.6 5.1 37 21-57 145-181 (185)
150 COG3763 Uncharacterized protei 49.9 48 0.001 18.9 4.5 35 22-58 35-69 (71)
151 PF02885 Glycos_trans_3N: Glyc 49.7 43 0.00093 18.3 4.0 17 42-58 13-29 (66)
152 TIGR01848 PHA_reg_PhaR polyhyd 49.5 62 0.0013 20.0 5.5 43 16-58 10-60 (107)
153 PRK09430 djlA Dna-J like membr 48.8 59 0.0013 23.1 5.1 53 21-80 67-119 (267)
154 COG4103 Uncharacterized protei 48.8 74 0.0016 20.8 5.3 60 13-80 34-93 (148)
155 cd07978 TAF13 The TATA Binding 48.6 57 0.0012 19.4 5.0 34 66-99 51-84 (92)
156 KOG1029 Endocytic adaptor prot 47.8 98 0.0021 26.1 6.6 59 12-80 16-76 (1118)
157 PRK01844 hypothetical protein; 46.8 55 0.0012 18.8 4.1 34 22-57 35-68 (72)
158 PF05099 TerB: Tellurite resis 46.3 6.2 0.00013 24.6 -0.2 53 22-80 36-88 (140)
159 PF01885 PTS_2-RNA: RNA 2'-pho 46.1 42 0.00091 22.6 3.9 37 19-57 26-62 (186)
160 PF11848 DUF3368: Domain of un 45.1 44 0.00095 17.2 3.1 32 22-55 14-46 (48)
161 PLN00138 large subunit ribosom 45.0 75 0.0016 19.8 5.3 43 13-57 5-47 (113)
162 PF14069 SpoVIF: Stage VI spor 44.8 63 0.0014 18.8 5.7 31 42-79 46-76 (79)
163 PF03979 Sigma70_r1_1: Sigma-7 44.7 42 0.00092 19.2 3.3 44 9-58 7-50 (82)
164 COG1460 Uncharacterized protei 44.0 75 0.0016 19.9 4.4 30 27-58 81-110 (114)
165 PRK14981 DNA-directed RNA poly 43.8 72 0.0016 19.6 4.4 11 44-54 95-105 (112)
166 cd00086 homeodomain Homeodomai 43.4 47 0.001 17.0 5.8 42 7-57 11-52 (59)
167 KOG4403 Cell surface glycoprot 42.4 78 0.0017 24.7 5.1 33 7-39 66-98 (575)
168 PRK00819 RNA 2'-phosphotransfe 42.1 60 0.0013 21.8 4.1 34 20-55 28-61 (179)
169 COG2818 Tag 3-methyladenine DN 41.9 50 0.0011 22.5 3.6 72 8-84 54-125 (188)
170 PF06207 DUF1002: Protein of u 40.7 1.2E+02 0.0025 21.3 5.4 47 27-79 173-221 (225)
171 TIGR01639 P_fal_TIGR01639 Plas 40.7 62 0.0014 17.6 4.1 33 24-58 8-40 (61)
172 PF12486 DUF3702: ImpA domain 40.5 43 0.00094 21.8 3.1 30 8-37 68-97 (148)
173 KOG3442 Uncharacterized conser 39.9 84 0.0018 20.1 4.2 45 21-70 51-95 (132)
174 cd07176 terB tellurite resista 39.7 33 0.00072 20.1 2.4 36 22-57 15-53 (111)
175 KOG4578 Uncharacterized conser 39.0 27 0.00059 26.1 2.2 32 6-37 367-398 (421)
176 PF04282 DUF438: Family of unk 38.5 73 0.0016 18.1 3.5 45 5-54 12-56 (71)
177 cd07316 terB_like_DjlA N-termi 37.8 85 0.0018 18.3 6.0 53 22-81 12-64 (106)
178 PF08006 DUF1700: Protein of u 37.5 83 0.0018 20.7 4.3 47 27-77 2-48 (181)
179 cd08330 CARD_ASC_NALP1 Caspase 37.2 84 0.0018 18.1 4.7 47 21-80 25-71 (82)
180 TIGR00624 tag DNA-3-methyladen 37.1 74 0.0016 21.4 3.9 65 8-79 52-116 (179)
181 KOG4301 Beta-dystrobrevin [Cyt 36.6 61 0.0013 24.4 3.6 66 10-84 111-176 (434)
182 KOG4286 Dystrophin-like protei 35.3 42 0.00091 27.9 2.8 47 10-58 471-517 (966)
183 KOG3555 Ca2+-binding proteogly 34.2 43 0.00092 25.3 2.6 68 9-82 211-279 (434)
184 KOG4070 Putative signal transd 33.9 39 0.00083 22.4 2.1 65 11-81 14-85 (180)
185 PRK10353 3-methyl-adenine DNA 32.7 67 0.0014 21.8 3.2 67 8-79 53-119 (187)
186 PF12419 DUF3670: SNF2 Helicas 32.5 1.3E+02 0.0029 19.0 5.0 51 22-78 80-138 (141)
187 PF09336 Vps4_C: Vps4 C termin 31.7 81 0.0018 17.2 2.9 26 25-52 29-54 (62)
188 PF08044 DUF1707: Domain of un 31.5 69 0.0015 17.0 2.5 31 22-54 20-50 (53)
189 KOG1264 Phospholipase C [Lipid 31.2 61 0.0013 27.4 3.2 61 11-80 146-207 (1267)
190 KOG2301 Voltage-gated Ca2+ cha 30.9 56 0.0012 29.3 3.1 68 5-79 1413-1482(1592)
191 PF01023 S_100: S-100/ICaBP ty 30.6 82 0.0018 16.0 3.5 31 8-38 5-37 (44)
192 PF10437 Lip_prot_lig_C: Bacte 30.5 1.1E+02 0.0024 17.4 4.3 43 28-79 44-86 (86)
193 PF02337 Gag_p10: Retroviral G 30.1 1.3E+02 0.0027 18.0 5.2 37 40-77 21-57 (90)
194 PF11363 DUF3164: Protein of u 29.4 1.9E+02 0.004 19.7 5.3 41 13-58 123-163 (195)
195 cd08332 CARD_CASP2 Caspase act 29.4 1.3E+02 0.0027 17.7 5.0 47 22-81 31-77 (90)
196 PF12631 GTPase_Cys_C: Catalyt 29.3 53 0.0012 18.4 2.0 29 26-54 40-70 (73)
197 PF03874 RNA_pol_Rpb4: RNA pol 29.0 97 0.0021 18.7 3.3 9 26-34 71-79 (117)
198 PF14164 YqzH: YqzH-like prote 28.9 1.1E+02 0.0025 17.1 4.1 30 9-38 8-38 (64)
199 cd08327 CARD_RAIDD Caspase act 28.7 1.4E+02 0.0029 17.9 5.2 46 22-80 32-77 (94)
200 PF11197 DUF2835: Protein of u 28.5 28 0.00061 19.7 0.7 16 69-84 6-21 (68)
201 cd04411 Ribosomal_P1_P2_L12p R 27.8 1.5E+02 0.0032 18.1 5.6 30 26-57 17-46 (105)
202 TIGR00135 gatC glutamyl-tRNA(G 27.6 1.3E+02 0.0029 17.5 4.6 30 26-57 1-30 (93)
203 TIGR00988 hip integration host 27.1 85 0.0018 18.2 2.7 47 27-76 2-49 (94)
204 PRK00199 ihfB integration host 27.1 82 0.0018 18.4 2.6 49 27-77 2-50 (94)
205 PF09373 PMBR: Pseudomurein-bi 26.8 83 0.0018 14.8 2.1 16 23-38 2-17 (33)
206 COG5562 Phage envelope protein 26.6 82 0.0018 20.3 2.6 16 65-80 84-99 (137)
207 KOG1265 Phospholipase C [Lipid 26.6 3.2E+02 0.0069 23.6 6.4 46 24-80 198-248 (1189)
208 PF01369 Sec7: Sec7 domain; I 26.2 1.3E+02 0.0028 20.0 3.8 7 24-30 125-131 (190)
209 PF13829 DUF4191: Domain of un 25.6 2.2E+02 0.0047 20.0 4.8 36 21-58 163-198 (224)
210 TIGR01201 HU_rel DNA-binding p 25.5 92 0.002 20.0 2.8 51 22-75 27-77 (145)
211 cd07177 terB_like tellurium re 25.5 1.4E+02 0.003 16.9 3.6 35 22-56 12-46 (104)
212 cd07894 Adenylation_RNA_ligase 25.3 1.3E+02 0.0028 22.3 3.9 42 15-58 131-182 (342)
213 KOG0998 Synaptic vesicle prote 25.3 31 0.00067 28.8 0.7 62 9-80 11-72 (847)
214 PF02269 TFIID-18kDa: Transcri 24.9 1.4E+02 0.0029 17.7 3.3 35 65-99 50-84 (93)
215 PF07128 DUF1380: Protein of u 24.9 2E+02 0.0044 18.6 6.1 73 4-80 2-78 (139)
216 PRK11511 DNA-binding transcrip 24.9 1.8E+02 0.0038 17.9 6.4 49 1-56 1-49 (127)
217 PF08708 PriCT_1: Primase C te 24.7 1.3E+02 0.0028 16.4 4.1 16 42-57 51-66 (71)
218 PF02037 SAP: SAP domain; Int 24.2 97 0.0021 14.7 3.6 15 25-39 3-17 (35)
219 PF03871 RNA_pol_Rpb5_N: RNA p 24.1 1.2E+02 0.0025 17.9 2.9 43 47-89 5-54 (93)
220 PF08356 EF_assoc_2: EF hand a 24.0 1.7E+02 0.0037 17.4 5.4 38 42-80 2-39 (89)
221 PF09808 SNAPc_SNAP43: Small n 23.8 1.4E+02 0.003 20.0 3.5 26 47-80 4-29 (194)
222 smart00657 RPOL4c DNA-directed 23.8 1.9E+02 0.004 17.8 4.0 11 47-57 86-96 (118)
223 KOG4163 Prolyl-tRNA synthetase 23.5 1.2E+02 0.0026 23.8 3.4 49 25-81 434-482 (551)
224 cd01671 CARD Caspase activatio 23.1 1.5E+02 0.0032 16.3 5.0 46 22-80 24-69 (80)
225 smart00708 PhBP Insect pheromo 22.9 1.6E+02 0.0034 16.6 4.0 53 26-81 11-63 (103)
226 PRK00034 gatC aspartyl/glutamy 22.6 1.7E+02 0.0037 17.0 4.6 30 26-57 3-32 (95)
227 PF04433 SWIRM: SWIRM domain; 21.8 1.1E+02 0.0023 17.5 2.4 39 14-58 42-80 (86)
228 PF06226 DUF1007: Protein of u 21.4 1.1E+02 0.0024 20.8 2.7 24 15-38 56-79 (212)
229 TIGR00987 himA integration hos 21.3 1.1E+02 0.0024 17.9 2.4 47 26-75 2-48 (96)
230 PF00619 CARD: Caspase recruit 20.8 1.7E+02 0.0037 16.2 4.4 46 22-80 27-72 (85)
231 PF10256 Erf4: Golgin subfamil 20.8 78 0.0017 19.3 1.7 18 22-39 26-43 (118)
232 KOG3440 Ubiquinol cytochrome c 20.8 1.4E+02 0.003 18.9 2.7 66 13-80 27-95 (122)
233 PRK09613 thiH thiamine biosynt 20.8 3.5E+02 0.0076 21.1 5.5 47 23-80 10-56 (469)
234 smart00513 SAP Putative DNA-bi 20.6 1.2E+02 0.0025 14.3 3.6 15 25-39 3-17 (35)
235 PF08461 HTH_12: Ribonuclease 20.6 1.7E+02 0.0036 16.1 4.1 35 22-58 10-44 (66)
236 PHA02105 hypothetical protein 20.5 1.7E+02 0.0037 16.1 3.2 52 25-80 4-56 (68)
237 PRK06402 rpl12p 50S ribosomal 20.4 2.2E+02 0.0049 17.5 5.5 31 25-57 16-46 (106)
238 PRK11858 aksA trans-homoaconit 20.2 3.8E+02 0.0081 20.0 5.8 46 30-80 324-369 (378)
239 TIGR02660 nifV_homocitr homoci 20.2 3.3E+02 0.0072 20.1 5.2 44 31-79 322-365 (365)
No 1
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.53 E-value=8.2e-14 Score=78.59 Aligned_cols=66 Identities=30% Similarity=0.667 Sum_probs=56.7
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHH
Q 035984 10 KVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTY 79 (104)
Q Consensus 10 ~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~ 79 (104)
+++.+|+.||.|++|+|+.+|+..++..++ ..+++..+..++..+...+|. +++|.|+|+||+.+|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~--~~~~~~~~~~~~~~~~~~~D~--d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLG--RDMSDEESDEMIDQIFREFDT--DGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTT--SHSTHHHHHHHHHHHHHHHTT--TSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhc--ccccHHHHHHHHHHHHHHhCC--CCcCCCcHHHHhccC
Confidence 588999999999999999999999999988 666677777776666555665 999999999999875
No 2
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.51 E-value=8.1e-14 Score=91.42 Aligned_cols=69 Identities=25% Similarity=0.527 Sum_probs=66.1
Q ss_pred CCCHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 4 RGSRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 4 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
++...++++++|+.||+|++|+|+..++..+++.++ ..+++++++.++..++. +++|.|+|++|++.+.
T Consensus 87 ~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lg--e~~~deev~~ll~~~d~------d~dG~i~~~eF~~~~~ 155 (160)
T COG5126 87 RGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLG--ERLSDEEVEKLLKEYDE------DGDGEIDYEEFKKLIK 155 (160)
T ss_pred cCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhc--ccCCHHHHHHHHHhcCC------CCCceEeHHHHHHHHh
Confidence 677889999999999999999999999999999999 99999999999999998 9999999999999876
No 3
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.41 E-value=8.9e-13 Score=79.10 Aligned_cols=66 Identities=14% Similarity=0.248 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhhCC-CCCCcccHHHHHHHHHH-hCCCCCCCH-HHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 7 RLEKVKRIFQQFDT-NRDGGLNREEMAALLVA-VNPRVEFSD-EQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 7 ~~~~l~~~F~~~D~-d~~G~Is~~el~~~l~~-l~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
....+..+|+.||+ +++|+|+.+||+.++.. ++ ..+++ +++++++..++. +++|.|+|+||+.++.
T Consensus 6 ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg--~~ls~~~~v~~mi~~~D~------d~DG~I~F~EF~~l~~ 74 (89)
T cd05022 6 AIETLVSNFHKASVKGGKESLTASEFQELLTQQLP--HLLKDVEGLEEKMKNLDV------NQDSKLSFEEFWELIG 74 (89)
T ss_pred HHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhh--hhccCHHHHHHHHHHhCC------CCCCCCcHHHHHHHHH
Confidence 34578999999999 99999999999999998 77 66777 899999999999 9999999999999876
No 4
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.36 E-value=3.7e-12 Score=82.80 Aligned_cols=65 Identities=25% Similarity=0.503 Sum_probs=62.0
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 8 LEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 8 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
.+.++.+|+.||+|++|+|+.+||..++..++ .+.+.++++.++..++. +++|.|+|++|+.++.
T Consensus 84 ~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg--~~~~~~e~~~mi~~~d~------d~dg~i~f~ef~~~m~ 148 (151)
T KOG0027|consen 84 SEELKEAFRVFDKDGDGFISASELKKVLTSLG--EKLTDEECKEMIREVDV------DGDGKVNFEEFVKMMS 148 (151)
T ss_pred HHHHHHHHHHHccCCCCcCcHHHHHHHHHHhC--CcCCHHHHHHHHHhcCC------CCCCeEeHHHHHHHHh
Confidence 56899999999999999999999999999999 89999999999999999 9999999999999886
No 5
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.35 E-value=6.1e-12 Score=75.32 Aligned_cols=66 Identities=14% Similarity=0.323 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhhC-CCCCC-cccHHHHHHHHHH-----hCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHH
Q 035984 7 RLEKVKRIFQQFD-TNRDG-GLNREEMAALLVA-----VNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTY 79 (104)
Q Consensus 7 ~~~~l~~~F~~~D-~d~~G-~Is~~el~~~l~~-----l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~ 79 (104)
....+..+|+.|| ++++| +|+..|++.+|+. ++ ..++++++++++..++. +++|.|+|++|+.++
T Consensus 6 ~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg--~~~~~~~v~~~i~~~D~------n~dG~v~f~eF~~li 77 (88)
T cd05027 6 AMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLE--EIKEQEVVDKVMETLDS------DGDGECDFQEFMAFV 77 (88)
T ss_pred HHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhc--CCCCHHHHHHHHHHhCC------CCCCcCcHHHHHHHH
Confidence 3457899999998 79999 5999999999998 77 77889999999999998 999999999999977
Q ss_pred h
Q 035984 80 D 80 (104)
Q Consensus 80 ~ 80 (104)
.
T Consensus 78 ~ 78 (88)
T cd05027 78 A 78 (88)
T ss_pred H
Confidence 6
No 6
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.27 E-value=2.8e-11 Score=72.97 Aligned_cols=67 Identities=10% Similarity=0.304 Sum_probs=58.1
Q ss_pred HHHHHHHHHhhCC-CC-CCcccHHHHHHHHHH-hC--CCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 8 LEKVKRIFQQFDT-NR-DGGLNREEMAALLVA-VN--PRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 8 ~~~l~~~F~~~D~-d~-~G~Is~~el~~~l~~-l~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
...++.+|..||. ++ +|+|+..|+..++.. ++ .+..+++++++.++..++. +++|.|+|++|+.++.
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~------~~dg~I~f~eF~~l~~ 78 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQ------NRDGKVNFEEFVSLVA 78 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCC------CCCCcCcHHHHHHHHH
Confidence 5678999999997 97 699999999999986 22 1267889999999999998 9999999999999876
No 7
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.25 E-value=4.1e-11 Score=77.87 Aligned_cols=72 Identities=24% Similarity=0.460 Sum_probs=65.6
Q ss_pred CCHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHhccCC
Q 035984 5 GSRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYDDGAG 84 (104)
Q Consensus 5 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~~~~~ 84 (104)
......++.+|..||++++|+|+..++..+++.++ ..++..++..++..++. +++|.|++++|+.++.....
T Consensus 4 ~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg--~~~t~~el~~~~~~~D~------dg~g~I~~~eF~~l~~~~~~ 75 (151)
T KOG0027|consen 4 EEQILELKEAFQLFDKDGDGKISVEELGAVLRSLG--QNPTEEELRDLIKEIDL------DGDGTIDFEEFLDLMEKLGE 75 (151)
T ss_pred HHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcC--CCCCHHHHHHHHHHhCC------CCCCeEcHHHHHHHHHhhhc
Confidence 34567899999999999999999999999999999 88999999999999999 99999999999998874433
No 8
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.24 E-value=7.8e-11 Score=79.32 Aligned_cols=75 Identities=25% Similarity=0.495 Sum_probs=62.8
Q ss_pred CCCCHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCC--HHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 3 TRGSRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFS--DEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 3 ~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
++++..+|++.+|++||.+++|+|+.+|+..++..+-. ...+ ++.+..+.+....++|. +++|.|+|+||+.++.
T Consensus 98 ~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~-~~~~~~~e~~~~i~d~t~~e~D~--d~DG~IsfeEf~~~v~ 174 (187)
T KOG0034|consen 98 PKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVG-ENDDMSDEQLEDIVDKTFEEADT--DGDGKISFEEFCKVVE 174 (187)
T ss_pred CCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHc-cCCcchHHHHHHHHHHHHHHhCC--CCCCcCcHHHHHHHHH
Confidence 35677789999999999999999999999999998641 2333 67777777777777777 9999999999999886
No 9
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.24 E-value=5.8e-11 Score=71.67 Aligned_cols=68 Identities=13% Similarity=0.313 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhhC-CCCCC-cccHHHHHHHHHHh-C--CCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 7 RLEKVKRIFQQFD-TNRDG-GLNREEMAALLVAV-N--PRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 7 ~~~~l~~~F~~~D-~d~~G-~Is~~el~~~l~~l-~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
....+..+|+.|| +|++| +|+.+||..++... + .....++.++++++..++. +++|.|+|+||+.++.
T Consensus 8 a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~------n~dG~Idf~EF~~l~~ 80 (93)
T cd05026 8 AMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDS------NKDNEVDFNEFVVLVA 80 (93)
T ss_pred HHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCC------CCCCCCCHHHHHHHHH
Confidence 4456888899999 78998 59999999999763 2 0134477899999999998 9999999999999887
No 10
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.24 E-value=6.3e-11 Score=71.14 Aligned_cols=67 Identities=15% Similarity=0.347 Sum_probs=57.8
Q ss_pred HHHHHHHHHhhC-CCCCCc-ccHHHHHHHHHH-hC--CCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 8 LEKVKRIFQQFD-TNRDGG-LNREEMAALLVA-VN--PRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 8 ~~~l~~~F~~~D-~d~~G~-Is~~el~~~l~~-l~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
.+.++.+|+.|| .+++|+ |+..|+..+++. ++ .+..++++++++++..++. +++|.|+|++|+.++.
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~------d~~G~I~f~eF~~l~~ 79 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDE------NGDGEVDFQEFVVLVA 79 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCC------CCCCcCcHHHHHHHHH
Confidence 467899999997 999995 999999999985 54 1134688999999999988 9999999999999877
No 11
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.24 E-value=4e-11 Score=78.24 Aligned_cols=68 Identities=22% Similarity=0.505 Sum_probs=64.9
Q ss_pred CCCHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 4 RGSRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 4 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
++ +.+.++.+|+.+|.|++|.|++.+|+.+.+.|+ ..++++++.+||++++. +++|.|+-+||.++++
T Consensus 102 ~d-t~eEi~~afrl~D~D~~Gkis~~~lkrvakeLg--enltD~El~eMIeEAd~------d~dgevneeEF~~imk 169 (172)
T KOG0028|consen 102 RD-TKEEIKKAFRLFDDDKTGKISQRNLKRVAKELG--ENLTDEELMEMIEEADR------DGDGEVNEEEFIRIMK 169 (172)
T ss_pred cC-cHHHHHHHHHcccccCCCCcCHHHHHHHHHHhC--ccccHHHHHHHHHHhcc------cccccccHHHHHHHHh
Confidence 44 788999999999999999999999999999999 99999999999999999 9999999999999987
No 12
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.21 E-value=7e-11 Score=66.25 Aligned_cols=59 Identities=19% Similarity=0.277 Sum_probs=53.7
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 12 KRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 12 ~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
+.+|..+|++++|.|+.+|+..++..++ . +++++++++..++. +++|.|+|+||+.++.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g--~--~~~~~~~i~~~~d~------~~~g~i~~~ef~~~~~ 60 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG--L--PRSVLAQIWDLADT------DKDGKLDKEEFAIAMH 60 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC--C--CHHHHHHHHHHhcC------CCCCcCCHHHHHHHHH
Confidence 5789999999999999999999998766 3 88899999999988 8999999999999776
No 13
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.21 E-value=1.1e-10 Score=70.55 Aligned_cols=65 Identities=18% Similarity=0.294 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 6 SRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 6 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
.+...++.+|..||.+++|.|+.+++..+++..+ ++++++++++..++. +++|.|+|+||+.++.
T Consensus 7 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~----~~~~ev~~i~~~~d~------~~~g~I~~~eF~~~~~ 71 (96)
T smart00027 7 EDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG----LPQTLLAKIWNLADI------DNDGELDKDEFALAMH 71 (96)
T ss_pred HHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC----CCHHHHHHHHHHhcC------CCCCCcCHHHHHHHHH
Confidence 4667899999999999999999999999998754 578899999999988 8999999999999776
No 14
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.21 E-value=9.8e-11 Score=69.58 Aligned_cols=68 Identities=13% Similarity=0.326 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhhCC--CCCCcccHHHHHHHHHH-hC--CCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 7 RLEKVKRIFQQFDT--NRDGGLNREEMAALLVA-VN--PRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 7 ~~~~l~~~F~~~D~--d~~G~Is~~el~~~l~~-l~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
+.+.++.+|..||. +++|.|+.+++..+++. ++ .+..++++++..++..++. +++|.|+|++|+.++.
T Consensus 6 ~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~------~~~g~I~f~eF~~~~~ 78 (88)
T cd00213 6 AIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDV------NKDGKVDFQEFLVLIG 78 (88)
T ss_pred HHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhcc------CCCCcCcHHHHHHHHH
Confidence 45678999999999 89999999999999986 44 1123458999999999988 8999999999999887
No 15
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.20 E-value=1.4e-10 Score=69.44 Aligned_cols=66 Identities=12% Similarity=0.386 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhhCC-CC-CCcccHHHHHHHHHH---hCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 7 RLEKVKRIFQQFDT-NR-DGGLNREEMAALLVA---VNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 7 ~~~~l~~~F~~~D~-d~-~G~Is~~el~~~l~~---l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
....|-.+|+.||. ++ +|+|+.+||..++.. ++ .+++++++.++++.++. +++|.|+|+||+.++.
T Consensus 8 ~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg--~k~t~~ev~~m~~~~D~------d~dG~Idf~EFv~lm~ 78 (88)
T cd05029 8 AIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIG--SKLQDAEIAKLMEDLDR------NKDQEVNFQEYVTFLG 78 (88)
T ss_pred HHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHhcC------CCCCCCcHHHHHHHHH
Confidence 34467789999998 77 899999999999974 46 78999999999999998 9999999999999776
No 16
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.16 E-value=2.7e-10 Score=61.72 Aligned_cols=61 Identities=28% Similarity=0.582 Sum_probs=56.3
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHH
Q 035984 11 VKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTY 79 (104)
Q Consensus 11 l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~ 79 (104)
+..+|..+|.+++|.|+.+++..++..++ ...+.+.+..++..++. +++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~--~~~~~~~~~~~~~~~~~------~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLG--EGLSEEEIDEMIREVDK------DGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhC--CCCCHHHHHHHHHHhCC------CCCCeEeHHHHHHHh
Confidence 67889999999999999999999999988 88899999999999988 899999999998865
No 17
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.13 E-value=5.8e-10 Score=73.28 Aligned_cols=73 Identities=23% Similarity=0.453 Sum_probs=64.1
Q ss_pred CHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHhccCCC
Q 035984 6 SRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYDDGAGD 85 (104)
Q Consensus 6 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~~~~~~ 85 (104)
.+.++++.+|..+|++++|.|+..++..+++.++ ..+++.++.+++..++. +++.|+|.+|+.++.-..+.
T Consensus 17 ~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg--~~~s~~ei~~l~~~~d~-------~~~~idf~~Fl~~ms~~~~~ 87 (160)
T COG5126 17 EQIQELKEAFQLFDRDSDGLIDRNELGKILRSLG--FNPSEAEINKLFEEIDA-------GNETVDFPEFLTVMSVKLKR 87 (160)
T ss_pred HHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcC--CCCcHHHHHHHHHhccC-------CCCccCHHHHHHHHHHHhcc
Confidence 4567899999999999999999999999999999 89999999999999864 57899999999998865554
Q ss_pred cc
Q 035984 86 VD 87 (104)
Q Consensus 86 ~~ 87 (104)
.+
T Consensus 88 ~~ 89 (160)
T COG5126 88 GD 89 (160)
T ss_pred CC
Confidence 44
No 18
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.08 E-value=1.8e-10 Score=77.85 Aligned_cols=77 Identities=23% Similarity=0.414 Sum_probs=59.4
Q ss_pred CCCCCHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhC---CCC--CCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHH
Q 035984 2 ATRGSRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVN---PRV--EFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLL 76 (104)
Q Consensus 2 ~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~---~~~--~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~ 76 (104)
.++|+..++++|+|++||.|++|+|+..|+..+++.+- ... +..+...++..+.+...+|. +++|.||++||.
T Consensus 93 ~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~--n~Dg~lT~eef~ 170 (193)
T KOG0044|consen 93 TSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDK--NKDGKLTLEEFI 170 (193)
T ss_pred HcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCC--CCCCcccHHHHH
Confidence 46899999999999999999999999999999887642 111 12233445555555555555 999999999999
Q ss_pred HHHh
Q 035984 77 RTYD 80 (104)
Q Consensus 77 ~~~~ 80 (104)
...+
T Consensus 171 ~~~~ 174 (193)
T KOG0044|consen 171 EGCK 174 (193)
T ss_pred HHhh
Confidence 9776
No 19
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.06 E-value=5.8e-10 Score=71.37 Aligned_cols=90 Identities=22% Similarity=0.355 Sum_probs=73.3
Q ss_pred CCCHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccC--CCCceeHHHHHHHHhc
Q 035984 4 RGSRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFID--GEKGLTYDGLLRTYDD 81 (104)
Q Consensus 4 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~g~I~~~eF~~~~~~ 81 (104)
.-.+..+++.+|..||..++|+|+...+..+++.+| .++++.++.+.+....+ + +-..|+|++|+.+|++
T Consensus 6 ~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG--~nPT~aeV~k~l~~~~~------~~~~~~rl~FE~fLpm~q~ 77 (152)
T KOG0030|consen 6 TPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALG--QNPTNAEVLKVLGQPKR------REMNVKRLDFEEFLPMYQQ 77 (152)
T ss_pred CcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhc--CCCcHHHHHHHHcCccc------chhhhhhhhHHHHHHHHHH
Confidence 445678999999999999999999999999999999 99999999999888766 3 3478999999999998
Q ss_pred cCCCcchh--hhHhhhhhhhhh
Q 035984 82 GAGDVDRD--FDAVESKKGAEK 101 (104)
Q Consensus 82 ~~~~~~~~--~~~~~~~~~~~~ 101 (104)
.+++.+.. ...+..-+.++|
T Consensus 78 vaknk~q~t~edfvegLrvFDk 99 (152)
T KOG0030|consen 78 VAKNKDQGTYEDFVEGLRVFDK 99 (152)
T ss_pred HHhccccCcHHHHHHHHHhhcc
Confidence 88875543 244444444433
No 20
>PTZ00183 centrin; Provisional
Probab=99.05 E-value=1.3e-09 Score=70.11 Aligned_cols=67 Identities=19% Similarity=0.445 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 6 SRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 6 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
...+.++.+|..+|.+++|+|+..|+..++..++ ..++..++..++..++. +++|.|+|++|+.++.
T Consensus 87 ~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~--~~l~~~~~~~~~~~~d~------~~~g~i~~~ef~~~~~ 153 (158)
T PTZ00183 87 DPREEILKAFRLFDDDKTGKISLKNLKRVAKELG--ETITDEELQEMIDEADR------NGDGEISEEEFYRIMK 153 (158)
T ss_pred CcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhC--CCCCHHHHHHHHHHhCC------CCCCcCcHHHHHHHHh
Confidence 3456789999999999999999999999999888 88999999999999988 8999999999999887
No 21
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.05 E-value=1e-09 Score=59.53 Aligned_cols=51 Identities=24% Similarity=0.541 Sum_probs=47.6
Q ss_pred CCCcccHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 22 RDGGLNREEMAALLVAVNPRVE-FSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 22 ~~G~Is~~el~~~l~~l~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
.+|.|+.++|..++..++ .. +++.+++.++..++. +++|.|+|+||+.++.
T Consensus 1 ~~G~i~~~~~~~~l~~~g--~~~~s~~e~~~l~~~~D~------~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLG--IKDLSEEEVDRLFREFDT------DGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHHTT--SSSSCHHHHHHHHHHHTT------SSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhC--CCCCCHHHHHHHHHhccc------CCCCCCCHHHHHHHHH
Confidence 479999999999998778 78 999999999999999 9999999999999886
No 22
>PTZ00184 calmodulin; Provisional
Probab=99.04 E-value=1.5e-09 Score=68.94 Aligned_cols=67 Identities=21% Similarity=0.475 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 6 SRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 6 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
.....+..+|..||.+++|+|+..++..++..++ ..++.+++..++..++. +++|.|+|+||+.++.
T Consensus 81 ~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~--~~~~~~~~~~~~~~~d~------~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 81 DSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLG--EKLTDEEVDEMIREADV------DGDGQINYEEFVKMMM 147 (149)
T ss_pred cHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHC--CCCCHHHHHHHHHhcCC------CCCCcCcHHHHHHHHh
Confidence 4556789999999999999999999999999888 78899999999999888 8999999999998764
No 23
>PF14658 EF-hand_9: EF-hand domain
Probab=99.03 E-value=1.1e-09 Score=61.91 Aligned_cols=60 Identities=22% Similarity=0.429 Sum_probs=55.7
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHhhcCcccCCC-CceeHHHHHHHHh
Q 035984 13 RIFQQFDTNRDGGLNREEMAALLVAVNPRV-EFSDEQINAIIDEVFRTYGEFIDGE-KGLTYDGLLRTYD 80 (104)
Q Consensus 13 ~~F~~~D~d~~G~Is~~el~~~l~~l~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~-g~I~~~eF~~~~~ 80 (104)
.+|..||.++.|.|...++..+|+.++ . .+++.+++.+...+++ ++. |.|++++|+.+++
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~--~~~p~e~~Lq~l~~elDP------~g~~~~v~~d~F~~iM~ 63 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVT--GRSPEESELQDLINELDP------EGRDGSVNFDTFLAIMR 63 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHc--CCCCcHHHHHHHHHHhCC------CCCCceEeHHHHHHHHH
Confidence 369999999999999999999999998 5 7889999999999999 666 9999999999987
No 24
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.03 E-value=1.1e-09 Score=65.65 Aligned_cols=69 Identities=12% Similarity=0.249 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHh-hCCCCCC-cccHHHHHHHHHHhCC---CCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 6 SRLEKVKRIFQQ-FDTNRDG-GLNREEMAALLVAVNP---RVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 6 ~~~~~l~~~F~~-~D~d~~G-~Is~~el~~~l~~l~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
.....+..+|+. +|++++| .|+.+||+.++....+ +...++.++++++..++. +++|.|+|+||+.++.
T Consensus 6 ~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~------d~DG~I~f~EF~~l~~ 79 (89)
T cd05023 6 RCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDL------NSDGQLDFQEFLNLIG 79 (89)
T ss_pred HHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCC------CCCCcCcHHHHHHHHH
Confidence 345678899999 7788876 9999999999987520 134567899999999988 9999999999999876
No 25
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.03 E-value=1.4e-09 Score=68.14 Aligned_cols=62 Identities=21% Similarity=0.327 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 7 RLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 7 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
...++.++|..+|.|++|.|+.+|+..++ +. ..+..+..++..++. +++|.||++||+..+.
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l~----~~e~~~~~f~~~~D~------n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIR--LD----PNEHCIKPFFESCDL------DKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHH--cc----chHHHHHHHHHHHCC------CCCCCCCHHHHHHHHh
Confidence 45679999999999999999999999876 33 346778889999988 9999999999999774
No 26
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.03 E-value=2e-09 Score=70.03 Aligned_cols=74 Identities=20% Similarity=0.383 Sum_probs=67.9
Q ss_pred CCCHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHhccC
Q 035984 4 RGSRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYDDGA 83 (104)
Q Consensus 4 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~~~~ 83 (104)
...+++.|..+|..||.++.|.|..+.++.+|...+ .++++++|+.+++.+.. +..|.|+|..|+.+++++.
T Consensus 96 gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~g--Dr~~~eEV~~m~r~~p~------d~~G~~dy~~~~~~ithG~ 167 (171)
T KOG0031|consen 96 GTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMG--DRFTDEEVDEMYREAPI------DKKGNFDYKAFTYIITHGE 167 (171)
T ss_pred CCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhc--ccCCHHHHHHHHHhCCc------ccCCceeHHHHHHHHHccc
Confidence 345688899999999999999999999999999988 99999999999999988 8899999999999999776
Q ss_pred CC
Q 035984 84 GD 85 (104)
Q Consensus 84 ~~ 85 (104)
..
T Consensus 168 ~~ 169 (171)
T KOG0031|consen 168 KD 169 (171)
T ss_pred cc
Confidence 54
No 27
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.99 E-value=3.5e-09 Score=69.23 Aligned_cols=75 Identities=23% Similarity=0.434 Sum_probs=67.2
Q ss_pred CHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHhccCCC
Q 035984 6 SRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYDDGAGD 85 (104)
Q Consensus 6 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~~~~~~ 85 (104)
.+..+++.+|..||.++.|+|...||+.+++++| ..+...++.+++..+++ .+.|.|+|++|++.++...+.
T Consensus 30 ~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralG--FE~~k~ei~kll~d~dk------~~~g~i~fe~f~~~mt~k~~e 101 (172)
T KOG0028|consen 30 EQKQEIKEAFELFDPDMAGKIDVEELKVAMRALG--FEPKKEEILKLLADVDK------EGSGKITFEDFRRVMTVKLGE 101 (172)
T ss_pred HHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcC--CCcchHHHHHHHHhhhh------ccCceechHHHHHHHHHHHhc
Confidence 4557899999999999999999999999999999 89999999999999999 999999999999988865555
Q ss_pred cch
Q 035984 86 VDR 88 (104)
Q Consensus 86 ~~~ 88 (104)
.+.
T Consensus 102 ~dt 104 (172)
T KOG0028|consen 102 RDT 104 (172)
T ss_pred cCc
Confidence 443
No 28
>PTZ00183 centrin; Provisional
Probab=98.97 E-value=9.6e-09 Score=66.09 Aligned_cols=68 Identities=21% Similarity=0.467 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHhc
Q 035984 6 SRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYDD 81 (104)
Q Consensus 6 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~~ 81 (104)
....++..+|..+|.+++|.|+..|+..+++.++ ..++...+..++..++. +++|.|+|++|+.++..
T Consensus 14 ~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g--~~~~~~~~~~l~~~~d~------~~~g~i~~~eF~~~~~~ 81 (158)
T PTZ00183 14 DQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLG--FEPKKEEIKQMIADVDK------DGSGKIDFEEFLDIMTK 81 (158)
T ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhC--CCCCHHHHHHHHHHhCC------CCCCcEeHHHHHHHHHH
Confidence 4567899999999999999999999999999888 67788889999999988 89999999999987653
No 29
>PTZ00184 calmodulin; Provisional
Probab=98.88 E-value=1.4e-08 Score=64.51 Aligned_cols=68 Identities=19% Similarity=0.445 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHhc
Q 035984 6 SRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYDD 81 (104)
Q Consensus 6 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~~ 81 (104)
....+++..|..+|.+++|.|+.+++..++..++ ..++++.+..++..++. +++|.|+|++|+.++..
T Consensus 8 ~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~--~~~~~~~~~~~~~~~d~------~~~g~i~~~ef~~~l~~ 75 (149)
T PTZ00184 8 EQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG--QNPTEAELQDMINEVDA------DGNGTIDFPEFLTLMAR 75 (149)
T ss_pred HHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhC--CCCCHHHHHHHHHhcCc------CCCCcCcHHHHHHHHHH
Confidence 3456788999999999999999999999999888 77788888899998888 89999999999987663
No 30
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.83 E-value=1.7e-08 Score=60.27 Aligned_cols=66 Identities=15% Similarity=0.331 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhhCCC--CCCcccHHHHHHHHH-HhCCCCCCC----HHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHH
Q 035984 7 RLEKVKRIFQQFDTN--RDGGLNREEMAALLV-AVNPRVEFS----DEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTY 79 (104)
Q Consensus 7 ~~~~l~~~F~~~D~d--~~G~Is~~el~~~l~-~l~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~ 79 (104)
....+...|+.|+.. .+|.|+.+||..++. .++ ..++ +.+++.++..++. +++|.|+|++|+.++
T Consensus 6 ~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g--~~~t~~~~~~~v~~i~~~~D~------d~dG~I~f~eF~~~~ 77 (88)
T cd05030 6 AIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELP--NFLKKEKNQKAIDKIFEDLDT------NQDGQLSFEEFLVLV 77 (88)
T ss_pred HHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhh--HhhccCCCHHHHHHHHHHcCC------CCCCcCcHHHHHHHH
Confidence 345678899999976 489999999999997 444 4455 8999999999988 999999999999988
Q ss_pred h
Q 035984 80 D 80 (104)
Q Consensus 80 ~ 80 (104)
.
T Consensus 78 ~ 78 (88)
T cd05030 78 I 78 (88)
T ss_pred H
Confidence 7
No 31
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.77 E-value=7.5e-08 Score=62.76 Aligned_cols=73 Identities=23% Similarity=0.488 Sum_probs=61.0
Q ss_pred CCHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHhccCC
Q 035984 5 GSRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYDDGAG 84 (104)
Q Consensus 5 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~~~~~ 84 (104)
.++..+++.+|.+.|.|++|.|..++++.++.++| ...++++++.|+.+ ..|.|+|--|+.++-.-+.
T Consensus 28 q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlG--k~~~d~elDaM~~E----------a~gPINft~FLTmfGekL~ 95 (171)
T KOG0031|consen 28 QSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLG--KIASDEELDAMMKE----------APGPINFTVFLTMFGEKLN 95 (171)
T ss_pred HHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcC--CCCCHHHHHHHHHh----------CCCCeeHHHHHHHHHHHhc
Confidence 35778999999999999999999999999999999 77899998887765 4679999999998875444
Q ss_pred Ccchh
Q 035984 85 DVDRD 89 (104)
Q Consensus 85 ~~~~~ 89 (104)
-.+++
T Consensus 96 gtdpe 100 (171)
T KOG0031|consen 96 GTDPE 100 (171)
T ss_pred CCCHH
Confidence 44433
No 32
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.73 E-value=8.9e-08 Score=64.94 Aligned_cols=72 Identities=21% Similarity=0.439 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh-ccCCC
Q 035984 7 RLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD-DGAGD 85 (104)
Q Consensus 7 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~-~~~~~ 85 (104)
+.+.....|..||.+.+|+|+..|++.+|..+| .+-+.--+++|+..++. +.+|+|+|-+|+-+|. ..+++
T Consensus 97 qIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLg--apQTHL~lK~mikeVde------d~dgklSfreflLIfrkaaagE 168 (244)
T KOG0041|consen 97 QIKDAESMFKQYDEDRDGFIDLMELKRMMEKLG--APQTHLGLKNMIKEVDE------DFDGKLSFREFLLIFRKAAAGE 168 (244)
T ss_pred HHHHHHHHHHHhcccccccccHHHHHHHHHHhC--CchhhHHHHHHHHHhhc------ccccchhHHHHHHHHHHHhccc
Confidence 345577899999999999999999999999999 77778888999999999 9999999999999997 34444
Q ss_pred c
Q 035984 86 V 86 (104)
Q Consensus 86 ~ 86 (104)
.
T Consensus 169 L 169 (244)
T KOG0041|consen 169 L 169 (244)
T ss_pred c
Confidence 3
No 33
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.67 E-value=3.7e-08 Score=47.22 Aligned_cols=29 Identities=28% Similarity=0.629 Sum_probs=26.5
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q 035984 10 KVKRIFQQFDTNRDGGLNREEMAALLVAV 38 (104)
Q Consensus 10 ~l~~~F~~~D~d~~G~Is~~el~~~l~~l 38 (104)
+++.+|+.||+|++|+|+.+||..+++.+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 47899999999999999999999998864
No 34
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.64 E-value=1.3e-07 Score=60.75 Aligned_cols=63 Identities=14% Similarity=0.370 Sum_probs=56.0
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHH
Q 035984 8 LEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTY 79 (104)
Q Consensus 8 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~ 79 (104)
.+.+-..+++||++++|.|...+++.+|..+| .+++++++..++.-.. +.+|.|+|+.|++..
T Consensus 87 ~edfvegLrvFDkeg~G~i~~aeLRhvLttlG--ekl~eeEVe~Llag~e-------D~nG~i~YE~fVk~i 149 (152)
T KOG0030|consen 87 YEDFVEGLRVFDKEGNGTIMGAELRHVLTTLG--EKLTEEEVEELLAGQE-------DSNGCINYEAFVKHI 149 (152)
T ss_pred HHHHHHHHHhhcccCCcceeHHHHHHHHHHHH--hhccHHHHHHHHcccc-------ccCCcCcHHHHHHHH
Confidence 45566789999999999999999999999999 9999999999988764 678999999999844
No 35
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.61 E-value=3.2e-07 Score=62.70 Aligned_cols=63 Identities=17% Similarity=0.400 Sum_probs=57.1
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 10 KVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 10 ~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
.-+.+|..||.|++|.|+..||..+|..+| ..+++.-.+-+++.++. ...|.|.|++|+..+-
T Consensus 125 ~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~G--y~Lspq~~~~lv~kyd~------~~~g~i~FD~FI~ccv 187 (221)
T KOG0037|consen 125 QWRNVFRTYDRDRSGTIDSSELRQALTQLG--YRLSPQFYNLLVRKYDR------FGGGRIDFDDFIQCCV 187 (221)
T ss_pred HHHHHHHhcccCCCCcccHHHHHHHHHHcC--cCCCHHHHHHHHHHhcc------ccCCceeHHHHHHHHH
Confidence 456789999999999999999999999999 89999999999999987 6689999999998554
No 36
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.55 E-value=3.3e-07 Score=67.79 Aligned_cols=66 Identities=21% Similarity=0.376 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 7 RLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 7 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
.+.++...|+..|.++||.|..+|+...|+.++ .++++++++++++.+++ ++++.|+++||...+.
T Consensus 80 ~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~g--i~l~de~~~k~~e~~d~------~g~~~I~~~e~rd~~l 145 (463)
T KOG0036|consen 80 KELELYRIFQSIDLEHDGKIDPNEIWRYLKDLG--IQLSDEKAAKFFEHMDK------DGKATIDLEEWRDHLL 145 (463)
T ss_pred hHHHHHHHHhhhccccCCccCHHHHHHHHHHhC--CccCHHHHHHHHHHhcc------CCCeeeccHHHHhhhh
Confidence 456788999999999999999999999999999 99999999999999999 9999999999988654
No 37
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.54 E-value=1.3e-07 Score=45.77 Aligned_cols=30 Identities=30% Similarity=0.613 Sum_probs=26.4
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHH-HhC
Q 035984 10 KVKRIFQQFDTNRDGGLNREEMAALLV-AVN 39 (104)
Q Consensus 10 ~l~~~F~~~D~d~~G~Is~~el~~~l~-~l~ 39 (104)
+++.+|..||.|++|+|+.+|+..+++ ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 578999999999999999999999998 564
No 38
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.42 E-value=1e-06 Score=59.67 Aligned_cols=72 Identities=19% Similarity=0.270 Sum_probs=58.5
Q ss_pred CCCCCHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHhc
Q 035984 2 ATRGSRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYDD 81 (104)
Q Consensus 2 ~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~~ 81 (104)
++.|....=...+|+.||.|++|.|+-.|+..++..+. .+..++.++..|..++. +++|.|+++|++.+++.
T Consensus 57 fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~--rGt~eekl~w~F~lyD~------dgdG~It~~Eml~iv~~ 128 (193)
T KOG0044|consen 57 FPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTS--RGTLEEKLKWAFRLYDL------DGDGYITKEEMLKIVQA 128 (193)
T ss_pred CCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHc--CCcHHHHhhhhheeecC------CCCceEcHHHHHHHHHH
Confidence 34677777888999999999999999999988888776 55566666666555555 99999999999997763
No 39
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.41 E-value=1.3e-06 Score=56.82 Aligned_cols=73 Identities=22% Similarity=0.341 Sum_probs=62.0
Q ss_pred CCHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 5 GSRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 5 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
..+.-+..-+|..||-|++++|.-.++...+.++.. ..++++++..+.+.+-.+.|. +++|+|++.||.++..
T Consensus 104 APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr-~eLs~eEv~~i~ekvieEAD~--DgDgkl~~~eFe~~i~ 176 (189)
T KOG0038|consen 104 APRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTR-DELSDEEVELICEKVIEEADL--DGDGKLSFAEFEHVIL 176 (189)
T ss_pred ChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhh-ccCCHHHHHHHHHHHHHHhcC--CCCCcccHHHHHHHHH
Confidence 455667888999999999999999999999998762 478999998777777666666 9999999999999776
No 40
>PLN02964 phosphatidylserine decarboxylase
Probab=98.39 E-value=1.6e-06 Score=67.78 Aligned_cols=63 Identities=21% Similarity=0.261 Sum_probs=58.0
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHhc
Q 035984 11 VKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYDD 81 (104)
Q Consensus 11 l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~~ 81 (104)
+..+|..+|.+++|.|+.+||..++..++ ...+++++..+|+.++. +++|.|+++||..++..
T Consensus 181 i~~mf~~~D~DgdG~IdfdEFl~lL~~lg--~~~seEEL~eaFk~fDk------DgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 181 ARRILAIVDYDEDGQLSFSEFSDLIKAFG--NLVAANKKEELFKAADL------NGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHhCCCCCCeEcHHHHHHHHHHhc--cCCCHHHHHHHHHHhCC------CCCCcCCHHHHHHHHHh
Confidence 78999999999999999999999999887 67788999999999988 99999999999998875
No 41
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.32 E-value=1.6e-06 Score=64.26 Aligned_cols=83 Identities=14% Similarity=0.291 Sum_probs=63.1
Q ss_pred CCHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHhccC
Q 035984 5 GSRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVE-FSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYDDGA 83 (104)
Q Consensus 5 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~~~~ 83 (104)
.....+++.+|..||.+++|.|+..++.+.+..+. .+ +.......++..++. +.+|.++|+||.+.+....
T Consensus 10 ~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~--~~~~~~~~~~~l~~~~d~------~~dg~vDy~eF~~Y~~~~E 81 (463)
T KOG0036|consen 10 EERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLD--HPKPNYEAAKMLFSAMDA------NRDGRVDYSEFKRYLDNKE 81 (463)
T ss_pred HHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcC--CCCCchHHHHHHHHhccc------CcCCcccHHHHHHHHHHhH
Confidence 34556899999999999999999999999999887 44 555666678888887 9999999999999776433
Q ss_pred CCcchhhhHhhh
Q 035984 84 GDVDRDFDAVES 95 (104)
Q Consensus 84 ~~~~~~~~~~~~ 95 (104)
-.....+..++.
T Consensus 82 ~~l~~~F~~iD~ 93 (463)
T KOG0036|consen 82 LELYRIFQSIDL 93 (463)
T ss_pred HHHHHHHhhhcc
Confidence 333333444433
No 42
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.26 E-value=3.9e-06 Score=62.95 Aligned_cols=65 Identities=14% Similarity=0.296 Sum_probs=56.5
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHhC--CCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 10 KVKRIFQQFDTNRDGGLNREEMAALLVAVN--PRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 10 ~l~~~F~~~D~d~~G~Is~~el~~~l~~l~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
.+.-+|+..|.|++|.|+.+||..+.+.++ ....++++++.++-+.++. +++|.|++.||+..++
T Consensus 548 ~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~------NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 548 SLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDL------NKDGKIDLNEFLEAFR 614 (631)
T ss_pred hHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhcc------CCCCcccHHHHHHHHh
Confidence 466789999999999999999999888765 3357888998888888887 9999999999999776
No 43
>PLN02964 phosphatidylserine decarboxylase
Probab=98.24 E-value=7.8e-06 Score=64.00 Aligned_cols=64 Identities=13% Similarity=0.233 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCC-CCCHHH---HHHHHHHHHhhcCcccCCCCceeHHHHHHHHhc
Q 035984 6 SRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRV-EFSDEQ---INAIIDEVFRTYGEFIDGEKGLTYDGLLRTYDD 81 (104)
Q Consensus 6 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~-~~~~~~---~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~~ 81 (104)
.+.++++.+|..+|+|++|++ +..+++.++ . .+++.+ +++++..++. +++|.|+++||+.++..
T Consensus 140 kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG--~~~pte~e~~fi~~mf~~~D~------DgdG~IdfdEFl~lL~~ 207 (644)
T PLN02964 140 QEPESACESFDLLDPSSSNKV----VGSIFVSCS--IEDPVETERSFARRILAIVDY------DEDGQLSFSEFSDLIKA 207 (644)
T ss_pred HHHHHHHHHHHHHCCCCCCcC----HHHHHHHhC--CCCCCHHHHHHHHHHHHHhCC------CCCCeEcHHHHHHHHHH
Confidence 355789999999999999997 788888877 4 566665 7888888887 99999999999998874
No 44
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.22 E-value=6.2e-06 Score=44.32 Aligned_cols=48 Identities=21% Similarity=0.295 Sum_probs=40.2
Q ss_pred cccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 25 GLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 25 ~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
+++.+|++.+++.++ +.+++..+..+|...++ +++|.++.+||+.+|+
T Consensus 1 kmsf~Evk~lLk~~N--I~~~~~yA~~LFq~~D~------s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMN--IEMDDEYARQLFQECDK------SQSGRLEGEEFEEFYK 48 (51)
T ss_dssp EBEHHHHHHHHHHTT------HHHHHHHHHHH-S------SSSSEBEHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc--cCcCHHHHHHHHHHhcc------cCCCCccHHHHHHHHH
Confidence 367899999999999 99999999999999999 9999999999999987
No 45
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.18 E-value=2e-05 Score=47.34 Aligned_cols=67 Identities=13% Similarity=0.250 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhC---CCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 7 RLEKVKRIFQQFDTNRDGGLNREEMAALLVAVN---PRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 7 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
....|-..|+.|-. ..+.++..||+.++..-- ....-++..++++++.++. +++|.|+|.||+.++.
T Consensus 6 ai~~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~------n~Dg~vdF~EF~~Lv~ 75 (91)
T cd05024 6 SMEKMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDD------CRDGKVGFQSFFSLIA 75 (91)
T ss_pred HHHHHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCC------CCCCcCcHHHHHHHHH
Confidence 34567788999984 456899999999987522 1134467888999999998 9999999999999775
No 46
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.15 E-value=3.1e-06 Score=39.04 Aligned_cols=25 Identities=48% Similarity=0.749 Sum_probs=22.4
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHH
Q 035984 11 VKRIFQQFDTNRDGGLNREEMAALL 35 (104)
Q Consensus 11 l~~~F~~~D~d~~G~Is~~el~~~l 35 (104)
|+.+|+.+|.|++|.|+.+|+..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 5679999999999999999998754
No 47
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.13 E-value=3.3e-05 Score=47.55 Aligned_cols=65 Identities=15% Similarity=0.318 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 5 GSRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 5 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
.....+...+|..+|. ++|+|+-+....++...+ ++.+.+.+++.-.+. +++|.++++||+-.+.
T Consensus 6 ~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~----L~~~~L~~IW~LaD~------~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 6 PEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG----LPRDVLAQIWNLADI------DNDGKLDFEEFAIAMH 70 (104)
T ss_dssp CCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT----SSHHHHHHHHHHH-S------SSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC----CCHHHHHHHHhhhcC------CCCCcCCHHHHHHHHH
Confidence 4567789999999985 689999999999988644 788999999999999 9999999999988443
No 48
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.05 E-value=3.2e-05 Score=53.04 Aligned_cols=66 Identities=20% Similarity=0.265 Sum_probs=58.2
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 8 LEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 8 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
.-.+...|...|+|+.|.|+.+|+..++..... .+...+.++-|+..++. +..|+|.++||..+|+
T Consensus 56 ~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~-~~Fs~~TcrlmI~mfd~------~~~G~i~f~EF~~Lw~ 121 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRILAKELQQALSNGTW-SPFSIETCRLMISMFDR------DNSGTIGFKEFKALWK 121 (221)
T ss_pred cHHHHHHHHhhCccccccccHHHHHHHhhcCCC-CCCCHHHHHHHHHHhcC------CCCCccCHHHHHHHHH
Confidence 346888999999999999999999999986442 57888999999999998 9999999999999887
No 49
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.02 E-value=8.1e-06 Score=38.96 Aligned_cols=27 Identities=11% Similarity=0.356 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 48 QINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 48 ~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
+++++|+.+++ +++|.|+++||+.+++
T Consensus 1 E~~~~F~~~D~------d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 1 ELKEAFREFDK------DGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHHST------TSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCC------CCCCcCCHHHHHHHHH
Confidence 56788888888 9999999999999886
No 50
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.00 E-value=2e-05 Score=58.63 Aligned_cols=54 Identities=20% Similarity=0.310 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 6 SRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 6 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
.....+..+|..||.+++|+|+.+|+.. ...+|..++. +++|.|+++||.+.+.
T Consensus 331 ~~~~~l~~aF~~~D~dgdG~Is~~E~~~---------------~~~~F~~~D~------d~DG~Is~eEf~~~~~ 384 (391)
T PRK12309 331 AFTHAAQEIFRLYDLDGDGFITREEWLG---------------SDAVFDALDL------NHDGKITPEEMRAGLG 384 (391)
T ss_pred hhhHHHHHHHHHhCCCCCCcCcHHHHHH---------------HHHHHHHhCC------CCCCCCcHHHHHHHHH
Confidence 4456788999999999999999999831 3567888888 9999999999999887
No 51
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=3.7e-05 Score=55.43 Aligned_cols=73 Identities=18% Similarity=0.391 Sum_probs=55.3
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHH-HHhccCCCcchh
Q 035984 11 VKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLR-TYDDGAGDVDRD 89 (104)
Q Consensus 11 l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~-~~~~~~~~~~~~ 89 (104)
=+..|...|.|++|.++++||..++..--. ..|..--+++.+..+++ +++|.|+++||+. +|.+-.+..+++
T Consensus 165 De~rFk~AD~d~dg~lt~EEF~aFLHPEe~-p~M~~iVi~Etl~d~Dk------n~DG~I~~eEfigd~~~~~~~~~epe 237 (325)
T KOG4223|consen 165 DEERFKAADQDGDGSLTLEEFTAFLHPEEH-PHMKDIVIAETLEDIDK------NGDGKISLEEFIGDLYSHEGNEEEPE 237 (325)
T ss_pred HHHHHhhcccCCCCcccHHHHHhccChhhc-chHHHHHHHHHHhhccc------CCCCceeHHHHHhHHhhccCCCCCcc
Confidence 456799999999999999999998875331 23445556677777777 9999999999998 666555555555
Q ss_pred h
Q 035984 90 F 90 (104)
Q Consensus 90 ~ 90 (104)
|
T Consensus 238 W 238 (325)
T KOG4223|consen 238 W 238 (325)
T ss_pred c
Confidence 4
No 52
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.75 E-value=9.4e-05 Score=56.53 Aligned_cols=67 Identities=21% Similarity=0.385 Sum_probs=54.6
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHhc
Q 035984 8 LEKVKRIFQQFDTNRDGGLNREEMAALLVAVN-PRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYDD 81 (104)
Q Consensus 8 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~~ 81 (104)
...++..|...| +++|+|+..++..++...+ ..-....+++++++..... +.+|.|+|++|+.+|.+
T Consensus 18 l~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~------~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 18 LRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGV------DADGRVEFEEFVGIFLN 85 (627)
T ss_pred HHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCC------CcCCccCHHHHHHHHHh
Confidence 346788999999 9999999999999999877 1123446777777777776 99999999999998873
No 53
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.74 E-value=8.1e-05 Score=62.57 Aligned_cols=67 Identities=15% Similarity=0.327 Sum_probs=57.1
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCH-----HHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 8 LEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSD-----EQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 8 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
..++.-+|..||++.+|.++-++|..+++++|+..++.+ ++.++++..+++ +.+|.|+..+|++++-
T Consensus 2252 L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP------~r~G~Vsl~dY~afmi 2323 (2399)
T KOG0040|consen 2252 LKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDP------NRDGYVSLQDYMAFMI 2323 (2399)
T ss_pred HHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCC------CCcCcccHHHHHHHHH
Confidence 345566899999999999999999999999995444444 488999999999 9999999999999663
No 54
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.73 E-value=1.5e-05 Score=49.66 Aligned_cols=61 Identities=20% Similarity=0.223 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHH
Q 035984 7 RLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLR 77 (104)
Q Consensus 7 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~ 77 (104)
....+.+-|..+|.|++|.|+..|+..+...+. ..+.=+...+...+. ++++.||..||..
T Consensus 52 ~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~----~~e~C~~~F~~~CD~------n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 52 CKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLM----PPEHCARPFFRSCDV------NKDGKISLDEWCN 112 (113)
T ss_dssp GHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTS----TTGGGHHHHHHHH-T------T-SSSEEHHHHHH
T ss_pred hhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHh----hhHHHHHHHHHHcCC------CCCCCCCHHHHcc
Confidence 456788999999999999999999998765432 344456778888888 9999999999975
No 55
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.53 E-value=0.0011 Score=38.60 Aligned_cols=73 Identities=18% Similarity=0.296 Sum_probs=56.2
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHhccCCC
Q 035984 10 KVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYDDGAGD 85 (104)
Q Consensus 10 ~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~~~~~~ 85 (104)
.|..+|..|-. +.+.|+.++|..+|.........+...+..++..+...... ...+.+++++|..++.+..+.
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~--~~~~~lt~~gF~~fL~S~~N~ 73 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERN--RQKGQLTLEGFTRFLFSDENS 73 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHH--HCTTEEEHHHHHHHHHSTTCB
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhh--cccCCcCHHHHHHHHCCCcCC
Confidence 46789999955 88999999999999876522356899999999998763221 257999999999988755443
No 56
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=0.0015 Score=40.98 Aligned_cols=63 Identities=19% Similarity=0.339 Sum_probs=50.4
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHh------C--CCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHH
Q 035984 13 RIFQQFDTNRDGGLNREEMAALLVAV------N--PRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLR 77 (104)
Q Consensus 13 ~~F~~~D~d~~G~Is~~el~~~l~~l------~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~ 77 (104)
..|.+.|.|++|.|+-=|+.+++.-. + +..-+++.++..+++.+...-|. +++|.|+|.||+.
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDf--N~DG~IDYgEflK 141 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDF--NGDGVIDYGEFLK 141 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhccccc--CCCceeeHHHHHh
Confidence 47899999999999988888876532 2 21234578999999999887777 8999999999987
No 57
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.41 E-value=0.00023 Score=31.98 Aligned_cols=27 Identities=41% Similarity=0.658 Sum_probs=24.5
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHH
Q 035984 11 VKRIFQQFDTNRDGGLNREEMAALLVA 37 (104)
Q Consensus 11 l~~~F~~~D~d~~G~Is~~el~~~l~~ 37 (104)
++.+|..+|.+++|.|+..++..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 678999999999999999999998874
No 58
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=97.37 E-value=0.0011 Score=44.88 Aligned_cols=63 Identities=24% Similarity=0.454 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHhhCCC-CCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCc-eeHHHHHHHHh
Q 035984 6 SRLEKVKRIFQQFDTN-RDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKG-LTYDGLLRTYD 80 (104)
Q Consensus 6 ~~~~~l~~~F~~~D~d-~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~-I~~~eF~~~~~ 80 (104)
.....+...|..+|.+ +.|+|+.+++..+.. +. .+....++++.++. .+++. |+|++|++.+.
T Consensus 30 ~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~-~~-----~Np~~~rI~~~f~~------~~~~~~v~F~~Fv~~ls 94 (187)
T KOG0034|consen 30 NEIERLYERFKKLDRNNGDGYLTKEEFLSIPE-LA-----LNPLADRIIDRFDT------DGNGDPVDFEEFVRLLS 94 (187)
T ss_pred HHHHHHHHHHHHhccccccCccCHHHHHHHHH-Hh-----cCcHHHHHHHHHhc------cCCCCccCHHHHHHHHh
Confidence 3556788889999998 999999999988773 22 12345567777766 55555 77777777665
No 59
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=97.27 E-value=0.00066 Score=36.25 Aligned_cols=32 Identities=31% Similarity=0.586 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 035984 6 SRLEKVKRIFQQFDTNRDGGLNREEMAALLVA 37 (104)
Q Consensus 6 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~ 37 (104)
.....+..+|..+|.+++|+|+.+||..++..
T Consensus 22 ~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 22 LSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 44566999999999999999999999998764
No 60
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.24 E-value=0.00054 Score=31.39 Aligned_cols=25 Identities=12% Similarity=0.365 Sum_probs=20.6
Q ss_pred HHHHHHHHHhhcCcccCCCCceeHHHHHHHH
Q 035984 49 INAIIDEVFRTYGEFIDGEKGLTYDGLLRTY 79 (104)
Q Consensus 49 ~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~ 79 (104)
++++|..++. +++|.|+++||.+++
T Consensus 1 l~~~F~~~D~------d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDT------DGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTT------TSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcC------CCCCcCCHHHHHHHC
Confidence 3567788888 999999999998853
No 61
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.00085 Score=48.54 Aligned_cols=70 Identities=17% Similarity=0.266 Sum_probs=56.3
Q ss_pred CCCCHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 3 TRGSRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 3 ~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
++....+++..+|...|.+++|.|+..|+..-+.... ......++.+-+...+. +.+|.|+|+++...+.
T Consensus 71 ~~ee~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~--k~~v~~~~~~~~~~~d~------~~Dg~i~~eey~~~~~ 140 (325)
T KOG4223|consen 71 TPEESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQ--KKYVVEEAARRWDEYDK------NKDGFITWEEYLPQTY 140 (325)
T ss_pred CcchhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHH--HHHHHHHHHHHHHHhcc------CccceeeHHHhhhhhh
Confidence 3556788999999999999999999999999666544 34455666777777777 9999999999988444
No 62
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.00 E-value=0.0017 Score=30.94 Aligned_cols=27 Identities=11% Similarity=0.241 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 48 QINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 48 ~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
+++.+|..++. +++|.|+.+||..+++
T Consensus 1 ~l~~~F~~~D~------d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDK------DGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-T------TSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCC------CCCCcCcHHHHHHHHH
Confidence 35678888888 9999999999999887
No 63
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=96.85 E-value=0.0018 Score=48.74 Aligned_cols=65 Identities=22% Similarity=0.509 Sum_probs=43.0
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHhC----CCC----CCCH-----HHHHH-HHHHHHhhcCcccCCCCceeHHHHH
Q 035984 11 VKRIFQQFDTNRDGGLNREEMAALLVAVN----PRV----EFSD-----EQINA-IIDEVFRTYGEFIDGEKGLTYDGLL 76 (104)
Q Consensus 11 l~~~F~~~D~d~~G~Is~~el~~~l~~l~----~~~----~~~~-----~~~~~-l~~~~~~~~~~~~~~~g~I~~~eF~ 76 (104)
++-+|.+||.|+||-|+.+||..+++-.. .+. .++. .++.. +...+ .++ ++++++++++|+
T Consensus 235 F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yF---FG~--rg~~kLs~deF~ 309 (489)
T KOG2643|consen 235 FRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYF---FGK--RGNGKLSIDEFL 309 (489)
T ss_pred ceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHh---hcc--CCCccccHHHHH
Confidence 45589999999999999999998765322 111 1111 12222 22222 245 899999999999
Q ss_pred HHHh
Q 035984 77 RTYD 80 (104)
Q Consensus 77 ~~~~ 80 (104)
+++.
T Consensus 310 ~F~e 313 (489)
T KOG2643|consen 310 KFQE 313 (489)
T ss_pred HHHH
Confidence 9876
No 64
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=96.75 E-value=0.0031 Score=34.83 Aligned_cols=28 Identities=32% Similarity=0.654 Sum_probs=24.3
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 035984 8 LEKVKRIFQQFDTNRDGGLNREEMAALL 35 (104)
Q Consensus 8 ~~~l~~~F~~~D~d~~G~Is~~el~~~l 35 (104)
...+..+|..+|+|++|.|+.+||..++
T Consensus 39 ~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 39 DEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 4567778999999999999999998764
No 65
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=96.69 E-value=0.0015 Score=46.15 Aligned_cols=68 Identities=21% Similarity=0.298 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHHhhCCCCCCcccHHHHHHHHH-HhCCCCCCC--HHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 5 GSRLEKVKRIFQQFDTNRDGGLNREEMAALLV-AVNPRVEFS--DEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 5 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~-~l~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
.....++..+|...|.|.+|+|+..|++.-+. ... ..+. .++.+--|+.+++ +++|.|+|+||..-+.
T Consensus 97 rrsrrklmviFsKvDVNtDrkisAkEmqrwImekta--EHfqeameeSkthFraVDp------dgDGhvsWdEykvkFl 167 (362)
T KOG4251|consen 97 RRSRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTA--EHFQEAMEESKTHFRAVDP------DGDGHVSWDEYKVKFL 167 (362)
T ss_pred hHHHHHHHHHHhhcccCccccccHHHHHHHHHHHHH--HHHHHHHhhhhhheeeeCC------CCCCceehhhhhhHHH
Confidence 34567899999999999999999999988544 322 1111 1233345677777 9999999999977554
No 66
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=96.21 E-value=0.013 Score=43.11 Aligned_cols=61 Identities=15% Similarity=0.233 Sum_probs=50.7
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 8 LEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 8 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
++.+.+.|..+|.|.+|.++..|+..+-.- -.+.=++..|+..+. ..+|.|+-.||+..|.
T Consensus 249 Kds~gWMFnklD~N~Dl~Ld~sEl~~I~ld------knE~CikpFfnsCD~------~kDg~iS~~EWC~CF~ 309 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYDLLLDQSELRAIELD------KNEACIKPFFNSCDT------YKDGSISTNEWCYCFQ 309 (434)
T ss_pred hhhhhhhhhccccccccccCHHHhhhhhcc------CchhHHHHHHhhhcc------cccCccccchhhhhhc
Confidence 567899999999999999999999876432 235566777888887 8999999999999876
No 67
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=96.12 E-value=0.013 Score=42.88 Aligned_cols=66 Identities=9% Similarity=0.125 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 6 SRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 6 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
...+-|+-+|..|+.+.+|++...++..+|+... .+..-.+-.++..++. ..+++|++++|..+..
T Consensus 293 ~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~l---gv~~l~v~~lf~~i~q------~d~~ki~~~~f~~fa~ 358 (412)
T KOG4666|consen 293 VTPVIIQYAFKRFSVAEDGISGEHILSLILQVVL---GVEVLRVPVLFPSIEQ------KDDPKIYASNFRKFAA 358 (412)
T ss_pred CcHHHHHHHHHhcccccccccchHHHHHHHHHhc---Ccceeeccccchhhhc------ccCcceeHHHHHHHHH
Confidence 3456788899999999999999988888888654 2333345567888887 7889999999998665
No 68
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.09 E-value=0.008 Score=26.54 Aligned_cols=26 Identities=8% Similarity=0.250 Sum_probs=21.7
Q ss_pred HHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 49 INAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 49 ~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
++.++..++. +++|.|++.+|..+++
T Consensus 2 ~~~~f~~~d~------~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDK------DGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCC------CCCCcEeHHHHHHHHH
Confidence 4567777777 8899999999999876
No 69
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=95.90 E-value=0.016 Score=49.52 Aligned_cols=63 Identities=13% Similarity=0.389 Sum_probs=51.4
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHhccCCC
Q 035984 14 IFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYDDGAGD 85 (104)
Q Consensus 14 ~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~~~~~~ 85 (104)
-|..||+|+.|.|+..+|.+++..- ...+..+++=++.-... +.+...+|++|+.-+-..+++
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~---k~ytqse~dfllscae~------dend~~~y~dfv~rfhepakd 4124 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGH---KHYTQSEIDFLLSCAEA------DENDMFDYEDFVDRFHEPAKD 4124 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhcc---ccchhHHHHHHHHhhcc------CccccccHHHHHHHhcCchhh
Confidence 3778999999999999999998853 35677887777777666 899999999999977655554
No 70
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.77 E-value=0.038 Score=43.18 Aligned_cols=67 Identities=12% Similarity=0.184 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHhc
Q 035984 7 RLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYDD 81 (104)
Q Consensus 7 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~~ 81 (104)
.....+..|..+|.|+.|+++..++..+|+..+ .+.+.+...++..+++. .-+|.++..||.+++..
T Consensus 591 ~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~--~~~d~~~~~~~l~ea~~------~~~g~v~l~e~~q~~s~ 657 (680)
T KOG0042|consen 591 DFLRRKTRFAFLDADKKAYQAIADVLKVLKSEN--VGWDEDRLHEELQEADE------NLNGFVELREFLQLMSA 657 (680)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHH------hhcceeeHHHHHHHHHH
Confidence 344566789999999999999999999999988 88999999999999998 78999999999998873
No 71
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=95.70 E-value=0.071 Score=42.71 Aligned_cols=73 Identities=21% Similarity=0.307 Sum_probs=63.2
Q ss_pred CHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHhccCCC
Q 035984 6 SRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYDDGAGD 85 (104)
Q Consensus 6 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~~~~~~ 85 (104)
.....+...|+.+|++.+|.++..+...++..++ ..+.+..+..++.+.+. ...+.+..++|+.++......
T Consensus 133 ~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n--~~l~~~~~~~~f~e~~~------~~~~k~~~~~~~~~~~~~~~r 204 (746)
T KOG0169|consen 133 RREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLN--VQLSESKARRLFKESDN------SQTGKLEEEEFVKFRKELTKR 204 (746)
T ss_pred hHHHHHHHHHHHHccccccccchhhHHHHHHHHH--HhhhHHHHHHHHHHHHh------hccceehHHHHHHHHHhhccC
Confidence 3445678899999999999999999999999998 88899999999999977 788999999999988766555
Q ss_pred c
Q 035984 86 V 86 (104)
Q Consensus 86 ~ 86 (104)
+
T Consensus 205 p 205 (746)
T KOG0169|consen 205 P 205 (746)
T ss_pred c
Confidence 5
No 72
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=95.54 E-value=0.16 Score=38.66 Aligned_cols=82 Identities=18% Similarity=0.346 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh--ccCC
Q 035984 7 RLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD--DGAG 84 (104)
Q Consensus 7 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~--~~~~ 84 (104)
+.+-+.--|..+|+..+|.|+..+|...+-... ..+.+....+...+....+ +.+..|+++||..++. ...+
T Consensus 316 q~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a---~~n~~~k~~~lkrvk~kf~---~~~~gISl~Ef~~Ff~Fl~~l~ 389 (489)
T KOG2643|consen 316 QEEILELEFERFDKGDSGAISEVDFAELLLAYA---GVNSKKKHKYLKRVKEKFK---DDGKGISLQEFKAFFRFLNNLN 389 (489)
T ss_pred HHHHHHHHHHHhCcccccccCHHHHHHHHHHHc---ccchHhHHHHHHHHHHhcc---CCCCCcCHHHHHHHHHHHhhhh
Confidence 455566679999999999999999999877654 1222222233333333222 2367899999988664 4455
Q ss_pred CcchhhhHhh
Q 035984 85 DVDRDFDAVE 94 (104)
Q Consensus 85 ~~~~~~~~~~ 94 (104)
+.+.++.++.
T Consensus 390 dfd~Al~fy~ 399 (489)
T KOG2643|consen 390 DFDIALRFYH 399 (489)
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 73
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=95.46 E-value=0.036 Score=33.10 Aligned_cols=33 Identities=24% Similarity=0.444 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhC
Q 035984 7 RLEKVKRIFQQFDTNRDGGLNREEMAALLVAVN 39 (104)
Q Consensus 7 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~ 39 (104)
....+..+++.+|.|++|.|+.+||..++..+.
T Consensus 51 ~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 51 DPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred CHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 345789999999999999999999999888765
No 74
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=95.45 E-value=0.038 Score=29.66 Aligned_cols=30 Identities=27% Similarity=0.520 Sum_probs=25.4
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q 035984 9 EKVKRIFQQFDTNRDGGLNREEMAALLVAV 38 (104)
Q Consensus 9 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~l 38 (104)
.-...+|+.+|+.++|.+..+|+..+++.+
T Consensus 21 ~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 21 EYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp HHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 346679999999999999999999998865
No 75
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=95.38 E-value=0.032 Score=34.93 Aligned_cols=30 Identities=20% Similarity=0.427 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 035984 7 RLEKVKRIFQQFDTNRDGGLNREEMAALLV 36 (104)
Q Consensus 7 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~ 36 (104)
....+...|..+|.|++|+||.+|+..++.
T Consensus 78 ~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 78 NEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred hHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 456678899999999999999999999884
No 76
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=95.37 E-value=0.03 Score=42.56 Aligned_cols=59 Identities=19% Similarity=0.339 Sum_probs=44.8
Q ss_pred HHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 15 FQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 15 F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
|-.+|.|++|.|+.+++..... ..++.-.++++|.++-+-.=. ..+|.++|++|+.++.
T Consensus 284 FweLD~Dhd~lidk~~L~ry~d-----~tlt~~ivdRIFs~v~r~~~~--~~eGrmdykdFv~Fil 342 (493)
T KOG2562|consen 284 FWELDTDHDGLIDKEDLKRYGD-----HTLTERIVDRIFSQVPRGFTV--KVEGRMDYKDFVDFIL 342 (493)
T ss_pred HhhhccccccccCHHHHHHHhc-----cchhhHHHHHHHhhcccccee--eecCcccHHHHHHHHH
Confidence 7788999999999999987654 345677888999944331111 5778999999999765
No 77
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=95.33 E-value=0.016 Score=34.47 Aligned_cols=33 Identities=33% Similarity=0.571 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhC
Q 035984 7 RLEKVKRIFQQFDTNRDGGLNREEMAALLVAVN 39 (104)
Q Consensus 7 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~ 39 (104)
....+..+|..+|.+++|.|+.++|..++..+.
T Consensus 49 s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 49 DPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 456789999999999999999999999888765
No 78
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=95.32 E-value=0.039 Score=32.60 Aligned_cols=32 Identities=38% Similarity=0.684 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhC
Q 035984 8 LEKVKRIFQQFDTNRDGGLNREEMAALLVAVN 39 (104)
Q Consensus 8 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~ 39 (104)
...+..+|..+|.+++|.|+.++|..++..+.
T Consensus 50 ~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~ 81 (88)
T cd05030 50 QKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVG 81 (88)
T ss_pred HHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 67899999999999999999999999887654
No 79
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=95.25 E-value=0.03 Score=33.40 Aligned_cols=46 Identities=17% Similarity=0.264 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhC---CCCCCCHHHHH
Q 035984 5 GSRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVN---PRVEFSDEQIN 50 (104)
Q Consensus 5 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~---~~~~~~~~~~~ 50 (104)
+...+.+..+|..+|.+++|.|+.++|..++..+. .|.+++.+.-.
T Consensus 40 ~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~g~~~~~~~~~ 88 (96)
T smart00027 40 GLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLNGYPIPASLPP 88 (96)
T ss_pred CCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHcCCCCCccCCH
Confidence 44567789999999999999999999999877643 44566554333
No 80
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=95.12 E-value=0.12 Score=39.54 Aligned_cols=32 Identities=16% Similarity=0.364 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q 035984 7 RLEKVKRIFQQFDTNRDGGLNREEMAALLVAV 38 (104)
Q Consensus 7 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l 38 (104)
....+...|+.+|.+..|+|+...+..++..+
T Consensus 462 ~~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i 493 (631)
T KOG0377|consen 462 HRSDLEDEFRKYDPKKSGKLSISHWAKCMENI 493 (631)
T ss_pred hhhHHHHHHHhcChhhcCeeeHHHHHHHHHHH
Confidence 34567889999999999999999998888763
No 81
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=95.00 E-value=0.055 Score=32.23 Aligned_cols=31 Identities=26% Similarity=0.383 Sum_probs=27.9
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhC
Q 035984 9 EKVKRIFQQFDTNRDGGLNREEMAALLVAVN 39 (104)
Q Consensus 9 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~ 39 (104)
..+..++..+|.|++|.|+.+||..++..+.
T Consensus 47 ~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 47 EGLEEKMKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 6789999999999999999999999887654
No 82
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=94.95 E-value=0.066 Score=31.65 Aligned_cols=33 Identities=27% Similarity=0.552 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhC
Q 035984 7 RLEKVKRIFQQFDTNRDGGLNREEMAALLVAVN 39 (104)
Q Consensus 7 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~ 39 (104)
....+..+|..+|.+++|.|+.++|..++..+.
T Consensus 50 s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 50 DADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred CHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 456799999999999999999999999887654
No 83
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=94.92 E-value=0.066 Score=31.73 Aligned_cols=33 Identities=21% Similarity=0.423 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhC
Q 035984 7 RLEKVKRIFQQFDTNRDGGLNREEMAALLVAVN 39 (104)
Q Consensus 7 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~ 39 (104)
..+.+..+|+.+|.|++|.|+.+||..++..+.
T Consensus 49 t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 49 QDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred CHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 456888999999999999999999988877654
No 84
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=94.85 E-value=0.068 Score=29.05 Aligned_cols=34 Identities=29% Similarity=0.496 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q 035984 5 GSRLEKVKRIFQQFDTNRDGGLNREEMAALLVAV 38 (104)
Q Consensus 5 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l 38 (104)
|...+.+..+|..+|.+++|.|+.+++..++..+
T Consensus 29 g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 29 GLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred CCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 3355678899999999999999999998877654
No 85
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=94.72 E-value=0.059 Score=39.40 Aligned_cols=84 Identities=18% Similarity=0.299 Sum_probs=52.4
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHHhC---CCCCCCHHHHHH-------HHHHHHhhcCcccCCCCceeHHHHHHHHh-cc
Q 035984 14 IFQQFDTNRDGGLNREEMAALLVAVN---PRVEFSDEQINA-------IIDEVFRTYGEFIDGEKGLTYDGLLRTYD-DG 82 (104)
Q Consensus 14 ~F~~~D~d~~G~Is~~el~~~l~~l~---~~~~~~~~~~~~-------l~~~~~~~~~~~~~~~g~I~~~eF~~~~~-~~ 82 (104)
.|.+.|.|++|.+...|+..++..-. +.....++...+ |-+.+....|. +.+--|+.+||+.--. ..
T Consensus 249 FF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDt--NqDRlvtleEFL~~t~~ke 326 (442)
T KOG3866|consen 249 FFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDT--NQDRLVTLEEFLNDTDNKE 326 (442)
T ss_pred heeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhccc--chhhhhhHHHHHhhhhhcc
Confidence 57788999999999999998766421 223333333322 22222232233 7888899999998443 34
Q ss_pred CCCcchhhhHhhhhhhh
Q 035984 83 AGDVDRDFDAVESKKGA 99 (104)
Q Consensus 83 ~~~~~~~~~~~~~~~~~ 99 (104)
.+.+..+|..++.++.+
T Consensus 327 f~~p~e~WEtl~q~~~y 343 (442)
T KOG3866|consen 327 FNPPKEEWETLGQKKVY 343 (442)
T ss_pred cCCcchhhhhhcccccc
Confidence 44555678777766543
No 86
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.56 E-value=0.068 Score=43.25 Aligned_cols=65 Identities=20% Similarity=0.267 Sum_probs=51.5
Q ss_pred CCCCHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHH
Q 035984 3 TRGSRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLR 77 (104)
Q Consensus 3 ~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~ 77 (104)
...++..+.+.+|+.+|+...|++|-..-+.+|-.. +++...+..|+.--+. +++|+++.+||.-
T Consensus 189 Vp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS----~Lpq~~LA~IW~LsDv------d~DGkL~~dEfil 253 (1118)
T KOG1029|consen 189 VPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQS----GLPQNQLAHIWTLSDV------DGDGKLSADEFIL 253 (1118)
T ss_pred ccchhhhHHHHHhhhcccccccccccHHHHHHHHhc----CCchhhHhhheeeecc------CCCCcccHHHHHH
Confidence 345677889999999999999999988877776653 3566666666655555 9999999999965
No 87
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=94.41 E-value=0.1 Score=31.03 Aligned_cols=32 Identities=25% Similarity=0.444 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhC
Q 035984 8 LEKVKRIFQQFDTNRDGGLNREEMAALLVAVN 39 (104)
Q Consensus 8 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~ 39 (104)
...+..++..+|.|++|.|+.+||..++..+.
T Consensus 51 ~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 51 PGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 46788899999999999999999998877654
No 88
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=94.28 E-value=0.18 Score=39.06 Aligned_cols=68 Identities=18% Similarity=0.249 Sum_probs=46.7
Q ss_pred CCCHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhC--C--CCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHH
Q 035984 4 RGSRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVN--P--RVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTY 79 (104)
Q Consensus 4 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~--~--~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~ 79 (104)
.|.+......+|+.||+.++|.+|.+++..++.... . ....+.+.++..|.... .-.++|.+|.+++
T Consensus 103 lC~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~---------~r~~ny~~f~Q~l 173 (694)
T KOG0751|consen 103 LCAPDALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIR---------KRHLNYAEFTQFL 173 (694)
T ss_pred ccCchHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHH---------HHhccHHHHHHHH
Confidence 466777888999999999999999999999998765 1 12333444444444332 2346677766654
Q ss_pred h
Q 035984 80 D 80 (104)
Q Consensus 80 ~ 80 (104)
.
T Consensus 174 h 174 (694)
T KOG0751|consen 174 H 174 (694)
T ss_pred H
Confidence 4
No 89
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=94.23 E-value=0.18 Score=30.75 Aligned_cols=66 Identities=21% Similarity=0.320 Sum_probs=46.5
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHhccCC
Q 035984 9 EKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYDDGAG 84 (104)
Q Consensus 9 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~~~~~ 84 (104)
..+..-|+.+-. +|++++++|..++- .+-+.+...++|+++.+.... ..+.|+.+|...+|..+++
T Consensus 30 ~~VE~RFd~La~--dG~L~rs~Fg~CIG-----M~dSkeFA~eLFdALaRrr~i---~~~~I~k~eL~efW~qisD 95 (100)
T PF08414_consen 30 KEVEKRFDKLAK--DGLLPRSDFGECIG-----MKDSKEFAGELFDALARRRGI---KGDSITKDELKEFWEQISD 95 (100)
T ss_dssp HHHHHHHHHH-B--TTBEEGGGHHHHHT-------S-HHHHHHHHHHHHHHTT-----SSEE-HHHHHHHHHHHH-
T ss_pred HHHHHHHHHhCc--CCcccHHHHHHhcC-----CcccHHHHHHHHHHHHHhcCC---ccCCcCHHHHHHHHHHhhc
Confidence 356777887776 89999999987643 344678888999999886654 3688999999998885544
No 90
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=94.22 E-value=0.12 Score=36.77 Aligned_cols=60 Identities=22% Similarity=0.343 Sum_probs=49.5
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHH
Q 035984 10 KVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLR 77 (104)
Q Consensus 10 ~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~ 77 (104)
+.+..=..+|.|++|.++.+|+...+-..+ ..+...++..++...+. +++.+++.++.+.
T Consensus 282 RkkEFeElIDsNhDGivTaeELe~y~dP~n--~~~alne~~~~ma~~d~------n~~~~Ls~eell~ 341 (362)
T KOG4251|consen 282 RKKEFEELIDSNHDGIVTAEELEDYVDPQN--FRLALNEVNDIMALTDA------NNDEKLSLEELLE 341 (362)
T ss_pred HHHHHHHHhhcCCccceeHHHHHhhcCchh--hhhhHHHHHHHHhhhcc------CCCcccCHHHHHH
Confidence 344444578999999999999999877777 67777888888888888 8999999999877
No 91
>PF14658 EF-hand_9: EF-hand domain
Probab=94.17 E-value=0.12 Score=29.19 Aligned_cols=34 Identities=15% Similarity=0.376 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHHhhCCCCC-CcccHHHHHHHHHH
Q 035984 4 RGSRLEKVKRIFQQFDTNRD-GGLNREEMAALLVA 37 (104)
Q Consensus 4 ~~~~~~~l~~~F~~~D~d~~-G~Is~~el~~~l~~ 37 (104)
++.++.+++.+.+.+|+++. |.|+.++|..+|+.
T Consensus 30 ~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 30 RSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred CCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 47788899999999999998 99999999998874
No 92
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=94.10 E-value=0.1 Score=27.05 Aligned_cols=30 Identities=23% Similarity=0.478 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 035984 6 SRLEKVKRIFQQFDTNRDGGLNREEMAALL 35 (104)
Q Consensus 6 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l 35 (104)
.....+..+|..+|.+++|.|+.+++..++
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 33 LSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred CCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 345667889999999999999999987654
No 93
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=93.98 E-value=0.6 Score=30.48 Aligned_cols=63 Identities=14% Similarity=0.367 Sum_probs=45.8
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHhc
Q 035984 13 RIFQQFDTNRDGGLNREEMAALLVAVN-PRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYDD 81 (104)
Q Consensus 13 ~~F~~~D~d~~G~Is~~el~~~l~~l~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~~ 81 (104)
..|..|-......++..-|.++|+..+ .+..++...++-+|..+.. .+...|+|++|+..+..
T Consensus 6 ~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~------k~~~~I~f~~F~~aL~~ 69 (154)
T PF05517_consen 6 KAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKA------KGARKITFEQFLEALAE 69 (154)
T ss_dssp HHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-------SS-SEEEHHHHHHHHHH
T ss_pred HHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhc------CCCcccCHHHHHHHHHH
Confidence 345555556666799999999999876 3346888899999999765 56667999999997763
No 94
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=93.89 E-value=0.39 Score=39.47 Aligned_cols=83 Identities=13% Similarity=0.164 Sum_probs=57.4
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCH--HHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHhccCCC
Q 035984 8 LEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSD--EQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYDDGAGD 85 (104)
Q Consensus 8 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~~~~~~ 85 (104)
..+++..|+.+|+...|.++++++..++..+| ..... ..+.+++.-+.. .+- ...|++++.+|...+..-..+
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg--~~~e~ee~~~~e~~~lvn~-~n~--l~~~qv~~~e~~ddl~R~~e~ 820 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSLG--YNTEEEEQGIAEWFRLVNK-KNP--LIQGQVQLLEFEDDLEREYED 820 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhcC--cccchhHHHHHHHHHHHhc-cCc--ccccceeHHHHHhHhhhhhhh
Confidence 46799999999999999999999999999888 33332 233334333332 111 334889999999988865555
Q ss_pred cchhhhHhhh
Q 035984 86 VDRDFDAVES 95 (104)
Q Consensus 86 ~~~~~~~~~~ 95 (104)
.+++..++..
T Consensus 821 l~~~~r~i~s 830 (890)
T KOG0035|consen 821 LDTELRAILA 830 (890)
T ss_pred hcHHHHHHHH
Confidence 6655544443
No 95
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=93.78 E-value=0.024 Score=41.56 Aligned_cols=64 Identities=14% Similarity=0.138 Sum_probs=47.9
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 10 KVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 10 ~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
.+++.|..+|+|+++-|...|++.+=+-+.. -..+..=.+++++..+. +++..|++.||...+.
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k-~s~~rkC~rk~~~yCDl------NkDKkISl~Ew~~CL~ 397 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLK-KSKPRKCSRKFFKYCDL------NKDKKISLDEWRGCLG 397 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHh-hccHHHHhhhcchhccc------CCCceecHHHHhhhhc
Confidence 5788999999999999999998776444330 12233444566666666 9999999999998664
No 96
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=93.63 E-value=0.18 Score=29.37 Aligned_cols=33 Identities=27% Similarity=0.504 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhC
Q 035984 7 RLEKVKRIFQQFDTNRDGGLNREEMAALLVAVN 39 (104)
Q Consensus 7 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~ 39 (104)
....+..++..+|.+++|.|+.++|..++..+.
T Consensus 49 ~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~ 81 (88)
T cd00213 49 DPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLA 81 (88)
T ss_pred CHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHH
Confidence 367799999999999999999999998877643
No 97
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=93.57 E-value=0.11 Score=31.92 Aligned_cols=34 Identities=26% Similarity=0.407 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q 035984 5 GSRLEKVKRIFQQFDTNRDGGLNREEMAALLVAV 38 (104)
Q Consensus 5 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l 38 (104)
+...+.+..++...|.+++|+++.+||.-++.-+
T Consensus 39 ~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 39 GLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp TSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 4556889999999999999999999999876643
No 98
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.54 E-value=0.24 Score=38.44 Aligned_cols=63 Identities=13% Similarity=0.173 Sum_probs=51.9
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 8 LEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 8 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
.+-.-..|+..-.|-+|+|+-.--+.++.. -+++-.|+..|++-.+. +.+|.+++.||+..|-
T Consensus 230 ReYYvnQFrtvQpDp~gfisGsaAknFFtK----Sklpi~ELshIWeLsD~------d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 230 REYYVNQFRTVQPDPHGFISGSAAKNFFTK----SKLPIEELSHIWELSDV------DRDGALTLSEFCAAFH 292 (737)
T ss_pred HHHHHhhhhcccCCcccccccHHHHhhhhh----ccCchHHHHHHHhhccc------CccccccHHHHHhhHh
Confidence 344567888889999999998888888775 35677888888888877 9999999999999653
No 99
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=93.40 E-value=0.39 Score=28.78 Aligned_cols=68 Identities=15% Similarity=0.176 Sum_probs=39.0
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhC-----CCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 8 LEKVKRIFQQFDTNRDGGLNREEMAALLVAVN-----PRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 8 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
.+|++-+|..+ .|++|.++..-+..++..+. .++..+--.++..++.+.... .....|+-++|+.++.
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~----~~~~~I~~~~Fl~wl~ 74 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV----QLSPKITENQFLDWLM 74 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT----TT-S-B-HHHHHHHHH
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc----CCCCccCHHHHHHHHH
Confidence 58999999998 89999999988887766521 112222112444444444400 2467899999999887
No 100
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=93.24 E-value=0.22 Score=38.08 Aligned_cols=63 Identities=19% Similarity=0.238 Sum_probs=44.8
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhC------CCCCCC-HHHHHHHHHHHHhhcCcccCCCCceeHHHHHH
Q 035984 9 EKVKRIFQQFDTNRDGGLNREEMAALLVAVN------PRVEFS-DEQINAIIDEVFRTYGEFIDGEKGLTYDGLLR 77 (104)
Q Consensus 9 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~------~~~~~~-~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~ 77 (104)
..+.=.|+++|.+++|.|+..|+..+.+... ....++ ++-+.++++.+-+ ...++|+.++|+.
T Consensus 351 ~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP------~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 351 ASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKP------EDENKITLQDLKG 420 (493)
T ss_pred cchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCc------cCCCceeHHHHhh
Confidence 3466689999999999999999887655421 112333 3444566666665 6789999999987
No 101
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=93.02 E-value=0.26 Score=29.16 Aligned_cols=33 Identities=24% Similarity=0.474 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhC
Q 035984 7 RLEKVKRIFQQFDTNRDGGLNREEMAALLVAVN 39 (104)
Q Consensus 7 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~ 39 (104)
..+.+..++..+|+|++|.|+.++|..++..+.
T Consensus 49 ~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~ 81 (88)
T cd05027 49 EQEVVDKVMETLDSDGDGECDFQEFMAFVAMVT 81 (88)
T ss_pred CHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 456699999999999999999999988877553
No 102
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=91.60 E-value=0.4 Score=28.79 Aligned_cols=33 Identities=21% Similarity=0.374 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhC
Q 035984 7 RLEKVKRIFQQFDTNRDGGLNREEMAALLVAVN 39 (104)
Q Consensus 7 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~ 39 (104)
....+..+|..+|.|++|.|+-+||..++..+.
T Consensus 46 d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 46 DPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred CHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 345688999999999999999999998877654
No 103
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=91.51 E-value=0.52 Score=34.80 Aligned_cols=72 Identities=14% Similarity=0.005 Sum_probs=54.6
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHhccCCCcc
Q 035984 9 EKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYDDGAGDVD 87 (104)
Q Consensus 9 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~~~~~~~~ 87 (104)
++++..|.+||.+++|.++..+....+.-+.. ...+...++--++.+.. +.+|.+.-.+|--+++-+++..+
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~-p~~t~~iiq~afk~f~v------~eDg~~ge~~ls~ilq~~lgv~~ 330 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCG-PPVTPVIIQYAFKRFSV------AEDGISGEHILSLILQVVLGVEV 330 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeC-CCCcHHHHHHHHHhccc------ccccccchHHHHHHHHHhcCcce
Confidence 67889999999999999999888877776651 34455555555555555 89999999998888886666543
No 104
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=90.70 E-value=0.39 Score=37.84 Aligned_cols=64 Identities=20% Similarity=0.338 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 7 RLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 7 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
-.+.+...|..||.|+||.++..|+..+++... ..+ +-........+. ...|.++|.-|+..|.
T Consensus 313 ~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P--~~p-------W~~~~~~~~t~~-~~~G~ltl~g~l~~Ws 376 (625)
T KOG1707|consen 313 GYRFLVDVFEKFDRDNDGALSPEELKDLFSTAP--GSP-------WTSSPYKDSTVK-NERGWLTLNGFLSQWS 376 (625)
T ss_pred HHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCC--CCC-------CCCCccccccee-cccceeehhhHHHHHH
Confidence 346788899999999999999999999999866 211 110000000000 4568889888887554
No 105
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=89.13 E-value=0.53 Score=35.34 Aligned_cols=27 Identities=41% Similarity=0.545 Sum_probs=24.3
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHH
Q 035984 11 VKRIFQQFDTNRDGGLNREEMAALLVA 37 (104)
Q Consensus 11 l~~~F~~~D~d~~G~Is~~el~~~l~~ 37 (104)
+..+|..+|.|++|.|+.+||..++..
T Consensus 359 ~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 359 SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 467899999999999999999998774
No 106
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.41 E-value=1.5 Score=33.01 Aligned_cols=41 Identities=17% Similarity=0.327 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHH
Q 035984 6 SRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQ 48 (104)
Q Consensus 6 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~ 48 (104)
.+.+.+++.|+.+|+.++|+|+.+-++.++..++ ...++..
T Consensus 306 ~~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N--~~vse~a 346 (449)
T KOG2871|consen 306 NPSEQLRRNFHAYDPEDNNFISCSGLQIVMTALN--RLVSEPA 346 (449)
T ss_pred CCCHHHHhhhhccCccCCCeeecHHHHHHHHHhc--ccccCHH
Confidence 3467899999999999999999999999999887 4444443
No 107
>PLN02222 phosphoinositide phospholipase C 2
Probab=85.33 E-value=8.5 Score=30.57 Aligned_cols=69 Identities=17% Similarity=0.341 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHhcc
Q 035984 7 RLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYDDG 82 (104)
Q Consensus 7 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~~~ 82 (104)
.-..+..+|..|-. ++.++.++|..+|.........+.+..+.+|+.+... ...+.++++.|..++.+.
T Consensus 23 ~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~-----~~~~~~~~~gF~~yL~s~ 91 (581)
T PLN02222 23 APREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSL-----LHRNGLHLDAFFKYLFGD 91 (581)
T ss_pred CcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhh-----hhccCcCHHHHHHHhcCC
Confidence 34588999998864 4799999999999886521235677888888876321 245679999999988753
No 108
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=84.06 E-value=2.8 Score=24.94 Aligned_cols=53 Identities=19% Similarity=0.177 Sum_probs=38.2
Q ss_pred CCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 22 RDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 22 ~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
-||.++..|...+-..+.....++..+...++..+.. ......++.+|...+.
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~~ 64 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEA------LEEEAPDLYEFTSLIK 64 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH------HHHhCCCHHHHHHHHH
Confidence 4788999987776544331135678888888888876 5666788888888665
No 109
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=84.05 E-value=3 Score=36.79 Aligned_cols=58 Identities=21% Similarity=0.332 Sum_probs=44.4
Q ss_pred CCCCCCHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 035984 1 MATRGSRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFR 58 (104)
Q Consensus 1 ~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~ 58 (104)
|...|.+.-.++......|++.+|+|+..|+..+|-.--+..-.+..++..-|.+++.
T Consensus 2288 mvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s~~eIE~AfraL~a 2345 (2399)
T KOG0040|consen 2288 MVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENILSSEEIEDAFRALDA 2345 (2399)
T ss_pred ccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccchHHHHHHHHHhhc
Confidence 4556777788999999999999999999999887765332234556678777777765
No 110
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=83.53 E-value=6.7 Score=30.80 Aligned_cols=55 Identities=15% Similarity=0.235 Sum_probs=37.8
Q ss_pred hhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHhc
Q 035984 17 QFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYDD 81 (104)
Q Consensus 17 ~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~~ 81 (104)
.-|.-++|.|+.+||..+=.-++ .++......|.-+++ .++|.+++++|..++.+
T Consensus 82 iaD~tKDglisf~eF~afe~~lC----~pDal~~~aFqlFDr------~~~~~vs~~~~~~if~~ 136 (694)
T KOG0751|consen 82 IADQTKDGLISFQEFRAFESVLC----APDALFEVAFQLFDR------LGNGEVSFEDVADIFGQ 136 (694)
T ss_pred hhhhcccccccHHHHHHHHhhcc----CchHHHHHHHHHhcc------cCCCceehHHHHHHHhc
Confidence 44667788888888877644444 134444455666666 78888999998888763
No 111
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=83.06 E-value=1.7 Score=24.68 Aligned_cols=28 Identities=18% Similarity=0.309 Sum_probs=23.5
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 035984 8 LEKVKRIFQQFDTNRDGGLNREEMAALLV 36 (104)
Q Consensus 8 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~ 36 (104)
.+.+..+|+.+ .++.++|+..||...|.
T Consensus 5 ~eqv~~aFr~l-A~~KpyVT~~dLr~~l~ 32 (69)
T PF08726_consen 5 AEQVEEAFRAL-AGGKPYVTEEDLRRSLT 32 (69)
T ss_dssp CHHHHHHHHHH-CTSSSCEEHHHHHHHS-
T ss_pred HHHHHHHHHHH-HcCCCcccHHHHHHHcC
Confidence 46788999999 88999999999997644
No 112
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=82.99 E-value=6.1 Score=24.56 Aligned_cols=45 Identities=18% Similarity=0.270 Sum_probs=38.7
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 035984 11 VKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVF 57 (104)
Q Consensus 11 l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~ 57 (104)
+..+|-+++.-++...+..++++++.++| ....++.++.++..+.
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG--~E~d~e~i~~visel~ 47 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVG--AEIDDERINLVLSELK 47 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhC--cccCHHHHHHHHHHhc
Confidence 44567778888888899999999999999 8899999999988874
No 113
>PLN02228 Phosphoinositide phospholipase C
Probab=82.94 E-value=11 Score=29.84 Aligned_cols=74 Identities=14% Similarity=0.174 Sum_probs=51.8
Q ss_pred CCHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHhcc
Q 035984 5 GSRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYDDG 82 (104)
Q Consensus 5 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~~~ 82 (104)
+.+-..|..+|..|-.+ +.++.++|..+|.........+.+.+..++..+...-.. ...+.++.+.|..++.+.
T Consensus 20 ~~~~~ei~~if~~~s~~--~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 20 REPPVSIKRLFEAYSRN--GKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVF--HHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred CCCcHHHHHHHHHhcCC--CccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhh--cccCccCHHHHHHHhcCc
Confidence 44667899999988643 579999999999876521234566778888877541111 234679999999988654
No 114
>PLN02223 phosphoinositide phospholipase C
Probab=81.74 E-value=13 Score=29.32 Aligned_cols=74 Identities=11% Similarity=0.006 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHH---HHhCCCCCCCHHHHHHHHHHHHhhcCccc--CCCCceeHHHHHHHHhc
Q 035984 7 RLEKVKRIFQQFDTNRDGGLNREEMAALL---VAVNPRVEFSDEQINAIIDEVFRTYGEFI--DGEKGLTYDGLLRTYDD 81 (104)
Q Consensus 7 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l---~~l~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~g~I~~~eF~~~~~~ 81 (104)
+-+.++.+|..| ..++|.++.+.+..++ .........+.++.+.+++.+........ ...+.++.+.|..++.+
T Consensus 14 ~p~~v~~~f~~~-~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 14 QPDLILNFFGNE-FHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred CcHHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 456788999988 4778899999999988 44332235678888999998876332100 23367999999997764
No 115
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=80.81 E-value=2.4 Score=26.87 Aligned_cols=30 Identities=13% Similarity=0.339 Sum_probs=22.7
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q 035984 9 EKVKRIFQQFDTNRDGGLNREEMAALLVAV 38 (104)
Q Consensus 9 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~l 38 (104)
--+.++...||++++|.|+.-.++.++..+
T Consensus 97 L~ln~Ll~vyD~~rtG~I~vls~KvaL~~L 126 (127)
T PF09068_consen 97 LLLNWLLNVYDSQRTGKIRVLSFKVALITL 126 (127)
T ss_dssp HHHHHHHHHH-TT--SEEEHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCCeeehhHHHHHHHHh
Confidence 357789999999999999999998887654
No 116
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=79.98 E-value=11 Score=30.06 Aligned_cols=69 Identities=25% Similarity=0.390 Sum_probs=47.3
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHH-hCCCCCCCHHHHHHHHHHHHhhc-CcccCCCCceeHHHHHHHHh
Q 035984 8 LEKVKRIFQQFDTNRDGGLNREEMAALLVA-VNPRVEFSDEQINAIIDEVFRTY-GEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 8 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~-l~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~g~I~~~eF~~~~~ 80 (104)
...+.++|...|.|.+|.++..|+-.+-+. ++ .++...++..+...+.... +. -.+.+++..-|+.+..
T Consensus 194 v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~--~pl~p~~l~~vk~vv~e~~p~g--v~~~~ltl~GFLfL~~ 264 (625)
T KOG1707|consen 194 VKALKRIFKISDSDNDGALSDAELNDFQKKCFN--TPLDPQELEDVKNVVQEICPDG--VYERGLTLPGFLFLNT 264 (625)
T ss_pred HHHHHHHHhhhccccccccchhhhhHHHHHhcC--CCCCHHHHHHHHHHHHhhcCch--hhhccccccchHHHHH
Confidence 446788999999999999999999887554 35 6777777766555554322 11 2345666677766544
No 117
>PLN02952 phosphoinositide phospholipase C
Probab=78.99 E-value=20 Score=28.61 Aligned_cols=74 Identities=18% Similarity=0.290 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCc-ccCCCCceeHHHHHHHHhc
Q 035984 7 RLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGE-FIDGEKGLTYDGLLRTYDD 81 (104)
Q Consensus 7 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~g~I~~~eF~~~~~~ 81 (104)
+...+..+|..|-.++ +.++.++|..+|.........+.+..+.++..+...... .......++++.|..++.+
T Consensus 36 ~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 36 PPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVTRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred ChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccccccccccCcCHHHHHHHHcC
Confidence 4567888999886544 689999999999987622346677788888776432110 0012356899999997763
No 118
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=78.78 E-value=18 Score=29.56 Aligned_cols=73 Identities=15% Similarity=0.133 Sum_probs=54.9
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHhccCCC
Q 035984 10 KVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYDDGAGD 85 (104)
Q Consensus 10 ~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~~~~~~ 85 (104)
.+..+|..+-.+ .++++..++..++.........+.+..+++++.+...-.. ...+.++++.|..++-+..++
T Consensus 206 ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~--~~~~~l~ldgF~~yL~S~~~~ 278 (746)
T KOG0169|consen 206 EVYFLFVQYSHG-KEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEF--RRHGLLSLDGFTRYLFSPDCN 278 (746)
T ss_pred hHHHHHHHHhCC-CCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhc--cccceecHHHHHHHhcCccCC
Confidence 566677765555 8899999999999987633567888889999888664333 466779999999987755554
No 119
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=78.39 E-value=2.2 Score=24.28 Aligned_cols=37 Identities=8% Similarity=0.149 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHhccCC
Q 035984 42 VEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYDDGAG 84 (104)
Q Consensus 42 ~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~~~~~ 84 (104)
..++......+...+.. -..+.|+-+||++.++.+.|
T Consensus 20 ~~l~~~~~~~l~~~Y~~------~k~~kIsR~~fvr~lR~IVG 56 (70)
T PF12174_consen 20 KHLPPSKMDLLQKHYEE------FKKKKISREEFVRKLRQIVG 56 (70)
T ss_pred HHCCHHHHHHHHHHHHH------HHHCCCCHHHHHHHHHHHHH
Confidence 44566666666666554 46689999999999886666
No 120
>PLN02230 phosphoinositide phospholipase C 4
Probab=77.51 E-value=24 Score=28.25 Aligned_cols=74 Identities=20% Similarity=0.284 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHhhcCccc-CCCCceeHHHHHHHHhc
Q 035984 7 RLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRV-EFSDEQINAIIDEVFRTYGEFI-DGEKGLTYDGLLRTYDD 81 (104)
Q Consensus 7 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~-~~~~~~~~~l~~~~~~~~~~~~-~~~g~I~~~eF~~~~~~ 81 (104)
+...+..+|..|-.++ +.++.++|..+|.....+. ..+.++.+.+++.+........ -..+.++.+.|..++.+
T Consensus 27 p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 27 PVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred CcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 4567899999995444 7999999999999865212 3467788888887755322100 13456999999997764
No 121
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=76.84 E-value=3.9 Score=26.38 Aligned_cols=56 Identities=18% Similarity=0.220 Sum_probs=30.4
Q ss_pred CCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCccc-CCCCceeHHHHHHHHhc
Q 035984 22 RDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFI-DGEKGLTYDGLLRTYDD 81 (104)
Q Consensus 22 ~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~g~I~~~eF~~~~~~ 81 (104)
.-+.|++.||..+-+-.. .+...++.++.++..-..... +..+.|+|+.|..+++.
T Consensus 4 ~~~~lsp~eF~qLq~y~e----ys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~ 60 (138)
T PF14513_consen 4 EWVSLSPEEFAQLQKYSE----YSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKT 60 (138)
T ss_dssp --S-S-HHHHHHHHHHHH----H----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHH
T ss_pred ceeccCHHHHHHHHHHHH----HHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHH
Confidence 346799999998755433 356688888888854111000 44568999998887763
No 122
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=76.14 E-value=2.1 Score=26.92 Aligned_cols=31 Identities=23% Similarity=0.485 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 44 FSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 44 ~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
++++..+.++.++-. +..|.|.|.||+.-|.
T Consensus 4 LtDeQFdrLW~e~Pv------n~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPV------NAKGRLKYQEFLSKFS 34 (118)
T ss_dssp --HHHHHHHHTTS-B-------TTS-EEHHHHHHHT-
T ss_pred ccHHHhhhhhhhCcC------CccCCEeHHHHHHHcc
Confidence 566666666666555 8999999999999776
No 123
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=75.69 E-value=21 Score=23.96 Aligned_cols=66 Identities=15% Similarity=0.166 Sum_probs=43.7
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 8 LEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFS-----DEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 8 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
-+++..+|..|++.+.+.+|..|+..+++.-. ...+ -..++-....+.. . +.+|.+.-++-..+|.
T Consensus 95 p~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr--~~~D~~GW~a~~~EW~~~y~L~---~--d~dG~l~Ke~iR~vYD 165 (174)
T PF05042_consen 95 PQKFEEIFSKYAKTGPDALTLRELWRMLKGNR--NANDPFGWFAAFFEWGALYILA---K--DKDGFLSKEDIRGVYD 165 (174)
T ss_pred HHHHHHHHHHhCCCCCCCcCHHHHHHHHHhcc--ccCCcchhhhhhhHHHHHHHHH---c--CcCCcEeHHHHhhhcc
Confidence 46889999999998889999999999888622 1111 1222222222211 1 6789999888887765
No 124
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.25 E-value=4.4 Score=31.79 Aligned_cols=33 Identities=30% Similarity=0.476 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q 035984 6 SRLEKVKRIFQQFDTNRDGGLNREEMAALLVAV 38 (104)
Q Consensus 6 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l 38 (104)
....+|..++.+.|.+.+|-++..||..++..+
T Consensus 262 lpi~ELshIWeLsD~d~DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 262 LPIEELSHIWELSDVDRDGALTLSEFCAAFHLV 294 (737)
T ss_pred CchHHHHHHHhhcccCccccccHHHHHhhHhhe
Confidence 346789999999999999999999999987754
No 125
>PLN02952 phosphoinositide phospholipase C
Probab=69.63 E-value=21 Score=28.52 Aligned_cols=57 Identities=11% Similarity=0.042 Sum_probs=43.3
Q ss_pred CCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHhccCCC
Q 035984 22 RDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYDDGAGD 85 (104)
Q Consensus 22 ~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~~~~~~ 85 (104)
+.|.++.+++..+.+.+......+..++..+|..+.. +.+.++.++|..++...-++
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-------~~~~mt~~~l~~FL~~~Q~e 69 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-------GGGHMGADQLRRFLVLHQDE 69 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-------CCCccCHHHHHHHHHHhCCC
Confidence 4689999999888887642133467899999999864 44789999999988754443
No 126
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.23 E-value=2.2 Score=35.17 Aligned_cols=61 Identities=18% Similarity=0.286 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHH
Q 035984 7 RLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLR 77 (104)
Q Consensus 7 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~ 77 (104)
...++..+|...|.+.+|.|+-.+...++.. .+++...+..++...+. .+.+.|++.+|+-
T Consensus 281 d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~----~gl~~~~l~~~w~l~d~------~n~~~ls~~ef~~ 341 (847)
T KOG0998|consen 281 DKQKYSKIFSQVDKDNDGSISSNEARNIFLP----FGLSKPRLAHVWLLADT------QNTGTLSKDEFAL 341 (847)
T ss_pred HHHHHHHHHHhccccCCCccccccccccccc----CCCChhhhhhhhhhcch------hccCcccccccch
Confidence 3456777999999999999999888887765 35678888888988888 8999999998765
No 127
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=67.99 E-value=15 Score=29.45 Aligned_cols=72 Identities=24% Similarity=0.284 Sum_probs=48.9
Q ss_pred CCCCCHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhC--CCC----CCCHHHHHHHHHHHHhhcCcccCCCCceeHHHH
Q 035984 2 ATRGSRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVN--PRV----EFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGL 75 (104)
Q Consensus 2 ~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~--~~~----~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF 75 (104)
++.++.+.+++-.|.++|. .+|.++.+++..++..+. ... +...+....++...+. ...+-+.++++
T Consensus 11 ~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~y~~~~~~ 83 (646)
T KOG0039|consen 11 ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDP------DHKGYITNEDL 83 (646)
T ss_pred ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccc------cccceeeecch
Confidence 4678999999999999999 999999999888776543 001 1222233334444444 66677887777
Q ss_pred HHHHh
Q 035984 76 LRTYD 80 (104)
Q Consensus 76 ~~~~~ 80 (104)
..++.
T Consensus 84 ~~ll~ 88 (646)
T KOG0039|consen 84 EILLL 88 (646)
T ss_pred hHHHH
Confidence 66555
No 128
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=67.32 E-value=12 Score=24.79 Aligned_cols=61 Identities=13% Similarity=0.282 Sum_probs=36.6
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHH--HHHHHHHhhcCcccCCCCceeHHHHHHHHhc
Q 035984 9 EKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQIN--AIIDEVFRTYGEFIDGEKGLTYDGLLRTYDD 81 (104)
Q Consensus 9 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~~ 81 (104)
++|..+| -.||.|.++.+++..+++.+. . +.+-+++ -.++-+ |. ++++.|--.+....++.
T Consensus 74 ~ri~e~F---SeDG~GnlsfddFlDmfSV~s--E-~APrdlK~~YAFkIY----Df--d~D~~i~~~DL~~~l~~ 136 (189)
T KOG0038|consen 74 RRICEVF---SEDGRGNLSFDDFLDMFSVFS--E-MAPRDLKAKYAFKIY----DF--DGDEFIGHDDLEKTLTS 136 (189)
T ss_pred HHHHHHh---ccCCCCcccHHHHHHHHHHHH--h-hChHHhhhhheeEEe----ec--CCCCcccHHHHHHHHHH
Confidence 3444555 479999999999999888765 2 2222222 222223 33 77777776666665543
No 129
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=66.72 E-value=36 Score=28.84 Aligned_cols=70 Identities=14% Similarity=0.253 Sum_probs=53.7
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhC--------CCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 9 EKVKRIFQQFDTNRDGGLNREEMAALLVAVN--------PRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 9 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~--------~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
-+|..+|..+-.+..-++|.+.|..++..-. .=.......++.+++.+....+. ...|+++-+-|+.+.-
T Consensus 221 ~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~--a~~gqms~dgf~ryl~ 298 (1189)
T KOG1265|consen 221 PEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDN--AEKGQMSTDGFVRYLM 298 (1189)
T ss_pred hhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhh--hhccccchhhhHHHhh
Confidence 3577899999889989999999999988632 00245678888899988774443 4669999999999655
No 130
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=66.32 E-value=29 Score=21.60 Aligned_cols=44 Identities=14% Similarity=0.236 Sum_probs=35.0
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 035984 12 KRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVF 57 (104)
Q Consensus 12 ~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~ 57 (104)
-.+|-++-.-++..+|.+++..++...+ ....+..+..+++.+.
T Consensus 6 vaAYlL~~lgG~~~pTaddI~kIL~AaG--veVd~~~~~l~~~~L~ 49 (112)
T PTZ00373 6 VAAYLMCVLGGNENPTKKEVKNVLSAVN--ADVEDDVLDNFFKSLE 49 (112)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHcC--CCccHHHHHHHHHHHc
Confidence 3455566667777899999999999988 8888888888887774
No 131
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=66.31 E-value=10 Score=25.50 Aligned_cols=30 Identities=17% Similarity=0.196 Sum_probs=24.9
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHhC
Q 035984 10 KVKRIFQQFDTNRDGGLNREEMAALLVAVN 39 (104)
Q Consensus 10 ~l~~~F~~~D~d~~G~Is~~el~~~l~~l~ 39 (104)
.|++=..-||.|++|.|.+-|...-++.+|
T Consensus 8 ~LQqHvaFFDrd~DGiI~P~dTy~GFraLG 37 (174)
T PF05042_consen 8 VLQQHVAFFDRDKDGIIYPWDTYQGFRALG 37 (174)
T ss_pred HHhhhhceeCCCCCeeECHHHHHHHHHHhC
Confidence 455556678999999999999888888877
No 132
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=66.31 E-value=10 Score=16.39 Aligned_cols=16 Identities=44% Similarity=0.640 Sum_probs=12.3
Q ss_pred CCCCCCcccHHHHHHH
Q 035984 19 DTNRDGGLNREEMAAL 34 (104)
Q Consensus 19 D~d~~G~Is~~el~~~ 34 (104)
|.|++|.|+.-++.-+
T Consensus 1 DvN~DG~vna~D~~~l 16 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALL 16 (21)
T ss_dssp -TTSSSSSSHHHHHHH
T ss_pred CCCCCCcCCHHHHHHH
Confidence 6799999998887654
No 133
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=64.60 E-value=55 Score=24.17 Aligned_cols=86 Identities=10% Similarity=0.214 Sum_probs=53.0
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHhccCCCcchh
Q 035984 11 VKRIFQQFDTNRDGGLNREEMAALLVAVN-PRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYDDGAGDVDRD 89 (104)
Q Consensus 11 l~~~F~~~D~d~~G~Is~~el~~~l~~l~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~~~~~~~~~~ 89 (104)
+++..+....+++|.|+..-...++..++ ....++.-.. +++..+... -+.|.+-.+-.......-..-.+..
T Consensus 224 LrRVRDfa~V~~~~~I~~~ia~~aL~~L~Vd~~GLd~~D~-k~L~~li~~-----f~GgPVGl~tia~~lge~~~TiEdv 297 (332)
T COG2255 224 LRRVRDFAQVKGDGDIDRDIADKALKMLDVDELGLDEIDR-KYLRALIEQ-----FGGGPVGLDTIAAALGEDRDTIEDV 297 (332)
T ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHhCcccccccHHHH-HHHHHHHHH-----hCCCCccHHHHHHHhcCchhHHHHH
Confidence 56677777789999999988888898887 2233443322 233333221 3457777776666555333334455
Q ss_pred hhHhhhhhhhhhc
Q 035984 90 FDAVESKKGAEKR 102 (104)
Q Consensus 90 ~~~~~~~~~~~~~ 102 (104)
.+++-++.++-+|
T Consensus 298 ~EPyLiq~gfi~R 310 (332)
T COG2255 298 IEPYLIQQGFIQR 310 (332)
T ss_pred HhHHHHHhchhhh
Confidence 6777777777554
No 134
>COG5611 Predicted nucleic-acid-binding protein, contains PIN domain [General function prediction only]
Probab=62.42 E-value=37 Score=21.47 Aligned_cols=62 Identities=15% Similarity=0.305 Sum_probs=47.6
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHH
Q 035984 10 KVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLR 77 (104)
Q Consensus 10 ~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~ 77 (104)
+..+.|..+.+.+.++|+..-+...+.-+..+.....+.+..+++.+.. +..=.|...+|..
T Consensus 22 ka~Q~f~~~s~~~k~fI~~~vliE~V~vL~~~y~~~rE~i~~VIetll~------~~~f~V~~~d~i~ 83 (130)
T COG5611 22 KAEQFFEELSQKGKLFIPEEVLIELVYVLEHGYKWEREDIYEVIETLLN------DELFNVELKDFIR 83 (130)
T ss_pred HHHHHHHhcCcCCCccchHHHHHHHHHHHHhcchhhHHHHHHHHHHHhc------cccceecchHHHH
Confidence 5667888889999999999988888777665578888888999997766 4444456666644
No 135
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=61.83 E-value=19 Score=25.05 Aligned_cols=38 Identities=11% Similarity=0.100 Sum_probs=24.8
Q ss_pred HHHHHHHhhcCcccCCCCceeHHHHHHHHhccCCCcchhhhHhhh
Q 035984 51 AIIDEVFRTYGEFIDGEKGLTYDGLLRTYDDGAGDVDRDFDAVES 95 (104)
Q Consensus 51 ~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~ 95 (104)
.+|..++. +.+|.|++.|...++. .++.+...+....|
T Consensus 103 ~~Fk~yDe------~rDgfIdl~ELK~mmE-KLgapQTHL~lK~m 140 (244)
T KOG0041|consen 103 SMFKQYDE------DRDGFIDLMELKRMME-KLGAPQTHLGLKNM 140 (244)
T ss_pred HHHHHhcc------cccccccHHHHHHHHH-HhCCchhhHHHHHH
Confidence 35555555 9999999999999886 34444444433333
No 136
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=61.78 E-value=10 Score=30.48 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhC
Q 035984 8 LEKVKRIFQQFDTNRDGGLNREEMAALLVAVN 39 (104)
Q Consensus 8 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~ 39 (104)
..-+.++|+.+|.+++|.|+..++...+..+.
T Consensus 554 ~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~ 585 (671)
T KOG4347|consen 554 LIFLERLFRLLDDSMTGLLTFKDLVSGLSILK 585 (671)
T ss_pred HHHHHHHHHhcccCCcceeEHHHHHHHHHHHH
Confidence 34567899999999999999999988877765
No 137
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=60.27 E-value=29 Score=19.47 Aligned_cols=41 Identities=20% Similarity=0.238 Sum_probs=27.8
Q ss_pred HhhCCCCCCcccHHHHHHHHHHhC--------CCCCCCHHHHHHHHHHH
Q 035984 16 QQFDTNRDGGLNREEMAALLVAVN--------PRVEFSDEQINAIIDEV 56 (104)
Q Consensus 16 ~~~D~d~~G~Is~~el~~~l~~l~--------~~~~~~~~~~~~l~~~~ 56 (104)
++||...+.+|+.+++..+++.-- +|..++..-+-+++.+-
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~g~~~~V~D~ktgeDiT~~iL~QIi~e~ 58 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVREGEDFKVVDAKTGEDITRSILLQIILEE 58 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHCCCeEEEEECCCCcccHHHHHHHHHHHH
Confidence 468999999999999999888621 23444444444554443
No 138
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=60.15 E-value=31 Score=20.92 Aligned_cols=31 Identities=13% Similarity=0.325 Sum_probs=26.2
Q ss_pred ccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 035984 26 LNREEMAALLVAVNPRVEFSDEQINAIIDEVFR 58 (104)
Q Consensus 26 Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~ 58 (104)
|+..++..++.-+. ..++++++.++...+..
T Consensus 20 vP~~Dy~PLlALL~--r~Ltd~ev~~Va~~L~~ 50 (96)
T PF11829_consen 20 VPPTDYVPLLALLR--RRLTDDEVAEVAAELAA 50 (96)
T ss_dssp B-HHHHHHHHHHHT--TTS-HHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHhc--ccCCHHHHHHHHHHHHh
Confidence 88899999888888 78999999999999977
No 139
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=58.63 E-value=36 Score=20.15 Aligned_cols=58 Identities=10% Similarity=0.123 Sum_probs=40.3
Q ss_pred HHHHHHHhhCC-CCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 10 KVKRIFQQFDT-NRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 10 ~l~~~F~~~D~-d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
++...=..+|. -++|.|+.++...+.. .+.+.+.++++++.+-. .|..-.+=|.++..
T Consensus 13 rI~~v~plLD~Ll~n~~it~E~y~~V~a-----~~T~qdkmRkLld~v~a--------kG~~~k~~F~~iL~ 71 (85)
T cd08324 13 HIRNTQCLVDNLLKNDYFSTEDAEIVCA-----CPTQPDKVRKILDLVQS--------KGEEVSEYFLYLLQ 71 (85)
T ss_pred HHHhhHHHHHHHhccCCccHHHHHHHHh-----CCCCHHHHHHHHHHHHh--------cCchHHHHHHHHHH
Confidence 44444444453 5789999999988766 46688999999998643 45555666777665
No 140
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=57.31 E-value=44 Score=20.64 Aligned_cols=43 Identities=21% Similarity=0.305 Sum_probs=33.9
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 035984 13 RIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVF 57 (104)
Q Consensus 13 ~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~ 57 (104)
-+|-++-.-++..+|.+++..+++..| .......+..+++.+.
T Consensus 5 aAylL~~l~g~~~pTa~dI~~IL~AaG--veVe~~~~~lf~~~L~ 47 (109)
T cd05833 5 AAYLLAVLGGNASPSAADVKKILGSVG--VEVDDEKLNKVISELE 47 (109)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcC--CCccHHHHHHHHHHHc
Confidence 455566667787899999999999988 8888887777777663
No 141
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=56.71 E-value=40 Score=19.99 Aligned_cols=53 Identities=9% Similarity=0.066 Sum_probs=38.4
Q ss_pred CcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHhccCC
Q 035984 24 GGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYDDGAG 84 (104)
Q Consensus 24 G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~~~~~ 84 (104)
..||..||....+..+ .+++...++.++..+.. ..-+-.+-++=..++...+.
T Consensus 13 n~iT~~eLlkyskqy~--i~it~~QA~~I~~~lr~------k~inIfn~~~r~~llkeia~ 65 (85)
T PF11116_consen 13 NNITAKELLKYSKQYN--ISITKKQAEQIANILRG------KNINIFNEQERKKLLKEIAK 65 (85)
T ss_pred hcCCHHHHHHHHHHhC--CCCCHHHHHHHHHHHhc------CCCCCCCHHHHHHHHHHHHH
Confidence 4688999999999878 89999998888888765 44445556666666664333
No 142
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=56.01 E-value=31 Score=19.43 Aligned_cols=30 Identities=17% Similarity=0.306 Sum_probs=22.6
Q ss_pred ccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 035984 26 LNREEMAALLVAVNPRVEFSDEQINAIIDEVF 57 (104)
Q Consensus 26 Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~ 57 (104)
++.+++..++...+ ..++..++..++..-+
T Consensus 14 l~d~~m~~if~l~~--~~vs~~el~a~lrke~ 43 (68)
T PF07308_consen 14 LKDDDMIEIFALAG--FEVSKAELSAWLRKED 43 (68)
T ss_pred CChHHHHHHHHHcC--CccCHHHHHHHHCCCC
Confidence 56667888888777 7888888888777643
No 143
>PRK00523 hypothetical protein; Provisional
Probab=55.88 E-value=37 Score=19.45 Aligned_cols=34 Identities=15% Similarity=0.256 Sum_probs=28.3
Q ss_pred CCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 035984 22 RDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVF 57 (104)
Q Consensus 22 ~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~ 57 (104)
.+--|+.+-++.++..+| .++++..++++...+.
T Consensus 36 ~NPpine~mir~M~~QMG--qKPSekki~Q~m~~mk 69 (72)
T PRK00523 36 ENPPITENMIRAMYMQMG--RKPSESQIKQVMRSVK 69 (72)
T ss_pred HCcCCCHHHHHHHHHHhC--CCccHHHHHHHHHHHH
Confidence 345688888999999999 8999999999888763
No 144
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=54.03 E-value=38 Score=18.97 Aligned_cols=33 Identities=15% Similarity=0.310 Sum_probs=28.4
Q ss_pred CCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 035984 23 DGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVF 57 (104)
Q Consensus 23 ~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~ 57 (104)
+--|+.+-++.++..+| .++++..++++...+.
T Consensus 29 NPpine~mir~M~~QMG--~kpSekqi~Q~m~~mk 61 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMG--RKPSEKQIKQMMRSMK 61 (64)
T ss_pred CCCCCHHHHHHHHHHhC--CCccHHHHHHHHHHHH
Confidence 45689999999999999 8999999999888764
No 145
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=53.76 E-value=65 Score=25.45 Aligned_cols=65 Identities=14% Similarity=0.109 Sum_probs=47.7
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhc-Cc-ccCCCCceeHHHHHHHHh
Q 035984 14 IFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTY-GE-FIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 14 ~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~-~~-~~~~~g~I~~~eF~~~~~ 80 (104)
+|..|-.-..+.++.--|..+|++.| ..-+++.++++++.+...- +. .......++-+.|.++..
T Consensus 91 LFyLiaegq~ekipihKFiTALkstG--LrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~ 157 (622)
T KOG0506|consen 91 LFYLIAEGQSEKIPIHKFITALKSTG--LRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIF 157 (622)
T ss_pred hhHHhhcCCcCcccHHHHHHHHHHcC--CCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhc
Confidence 57777666679999999999999988 8888888888888774321 00 003446688888988665
No 146
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=51.75 E-value=53 Score=24.12 Aligned_cols=43 Identities=23% Similarity=0.451 Sum_probs=24.1
Q ss_pred CCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHH
Q 035984 23 DGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTY 79 (104)
Q Consensus 23 ~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~ 79 (104)
+|.||++|-...++... ...++..++.+++.+ .||-+||..++
T Consensus 300 ~G~itReeal~~v~~~d--~~~~~~~~~~~~~~l------------g~t~~ef~~~~ 342 (343)
T TIGR03573 300 SGRITREEAIELVKEYD--GEFPKEDLEYFLKYL------------GISEEEFWKTV 342 (343)
T ss_pred cCCCCHHHHHHHHHHhc--ccccHHHHHHHHHHh------------CCCHHHHHHHh
Confidence 67777777666666543 344445555555444 35566666543
No 147
>smart00222 Sec7 Sec7 domain. Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors).
Probab=51.14 E-value=53 Score=21.91 Aligned_cols=35 Identities=11% Similarity=0.182 Sum_probs=19.2
Q ss_pred CCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 035984 23 DGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVF 57 (104)
Q Consensus 23 ~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~ 57 (104)
..++|.++|...++..+.+..++++.+..+++.+.
T Consensus 149 k~kmt~~~Fi~~~~~~~~~~~~~~~~L~~iY~~I~ 183 (187)
T smart00222 149 KKKMTLEDFIKNVRGSNDGEDLPREFLEELYDSIK 183 (187)
T ss_pred CCCCCHHHHHHHHhccCCCCCCCHHHHHHHHHHHH
Confidence 34556666666555544334555666666555553
No 148
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=50.50 E-value=12 Score=26.05 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=22.1
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHH
Q 035984 9 EKVKRIFQQFDTNRDGGLNREEMAAL 34 (104)
Q Consensus 9 ~~l~~~F~~~D~d~~G~Is~~el~~~ 34 (104)
-.+...|..+|.|++|+|+.+|+...
T Consensus 222 ~c~~~f~e~cd~~nd~~ial~ew~~c 247 (259)
T KOG4004|consen 222 HCTTRFFETCDLDNDKYIALDEWAGC 247 (259)
T ss_pred hhchhhhhcccCCCCCceeHHHhhcc
Confidence 35677899999999999999998764
No 149
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=50.15 E-value=61 Score=21.64 Aligned_cols=37 Identities=19% Similarity=0.289 Sum_probs=19.5
Q ss_pred CCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 035984 21 NRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVF 57 (104)
Q Consensus 21 d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~ 57 (104)
+...++|.++|...++....+..++++.+..+++.+.
T Consensus 145 ~~~~kmt~~~Fi~~~~~~~~~~~~~~~~L~~iY~~I~ 181 (185)
T cd00171 145 NVKKKMTLEDFIKNLRGINDGEDFPREFLKELYDSIK 181 (185)
T ss_pred ccCCCCCHHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Confidence 3344556666655555444334555565555555553
No 150
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.86 E-value=48 Score=18.93 Aligned_cols=35 Identities=14% Similarity=0.377 Sum_probs=28.7
Q ss_pred CCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 035984 22 RDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFR 58 (104)
Q Consensus 22 ~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~ 58 (104)
.+-.|+.+-++.++...| .++++..+++++..+..
T Consensus 35 ~NPpine~~iR~M~~qmG--qKpSe~kI~Qvm~~i~k 69 (71)
T COG3763 35 DNPPINEEMIRMMMAQMG--QKPSEKKINQVMRSIIK 69 (71)
T ss_pred hCCCCCHHHHHHHHHHhC--CCchHHHHHHHHHHHHh
Confidence 344688888888899888 89999999999887754
No 151
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=49.73 E-value=43 Score=18.30 Aligned_cols=17 Identities=24% Similarity=0.434 Sum_probs=7.0
Q ss_pred CCCCHHHHHHHHHHHHh
Q 035984 42 VEFSDEQINAIIDEVFR 58 (104)
Q Consensus 42 ~~~~~~~~~~l~~~~~~ 58 (104)
..++.+++..++..+..
T Consensus 13 ~~Ls~~e~~~~~~~i~~ 29 (66)
T PF02885_consen 13 EDLSREEAKAAFDAILD 29 (66)
T ss_dssp ----HHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHc
Confidence 45555555555555543
No 152
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=49.45 E-value=62 Score=20.04 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=29.8
Q ss_pred HhhCCCCCCcccHHHHHHHHHHhC--------CCCCCCHHHHHHHHHHHHh
Q 035984 16 QQFDTNRDGGLNREEMAALLVAVN--------PRVEFSDEQINAIIDEVFR 58 (104)
Q Consensus 16 ~~~D~d~~G~Is~~el~~~l~~l~--------~~~~~~~~~~~~l~~~~~~ 58 (104)
++||...+-+|+.+++..+++.-- +|..++..-+-+++-+...
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QII~E~E~ 60 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQIIAEEES 60 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHHHHHHHh
Confidence 368999999999999999887621 2344555555566665554
No 153
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=48.84 E-value=59 Score=23.14 Aligned_cols=53 Identities=13% Similarity=0.226 Sum_probs=31.2
Q ss_pred CCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 21 NRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 21 d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
.-||.|+..|+. +.+.+.....++.+.-+...+.+.. ......++.+|+..+.
T Consensus 67 kADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~------~k~~~~~l~~~~~~~~ 119 (267)
T PRK09430 67 KAKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFRE------GKEPDFPLREKLRQFR 119 (267)
T ss_pred hcCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHH------hcccCCCHHHHHHHHH
Confidence 468999999988 4444321134566664444444443 3444577888877665
No 154
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.82 E-value=74 Score=20.80 Aligned_cols=60 Identities=13% Similarity=0.290 Sum_probs=42.9
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 13 RIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 13 ~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
-+|++.+.| |.++..|...+..-+.....++..++..++..... -++..|++-.|...++
T Consensus 34 Llf~Vm~AD--G~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~------~~~Ea~d~y~fts~l~ 93 (148)
T COG4103 34 LLFHVMEAD--GTVSESEREAFRAILKENFGIDGEELDALIEAGEE------AGYEAIDLYSFTSVLK 93 (148)
T ss_pred HHHHHHhcc--cCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH------hhHHHHHHHHHHHHHH
Confidence 578876655 55777776654333321157899999999999988 7888898888877555
No 155
>cd07978 TAF13 The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Several hy
Probab=48.63 E-value=57 Score=19.42 Aligned_cols=34 Identities=9% Similarity=0.060 Sum_probs=24.4
Q ss_pred CCCceeHHHHHHHHhccCCCcchhhhHhhhhhhh
Q 035984 66 GEKGLTYDGLLRTYDDGAGDVDRDFDAVESKKGA 99 (104)
Q Consensus 66 ~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~~~~~ 99 (104)
+.++++.+||.-++++...-..+....+.+++..
T Consensus 51 r~~k~~~eD~~FliR~D~~Kl~Rl~~lL~~k~~~ 84 (92)
T cd07978 51 RRGKVKVEDLIFLLRKDPKKLARLRELLSMKDEL 84 (92)
T ss_pred CCCCCCHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 6788999999999986666555555555555543
No 156
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.82 E-value=98 Score=26.07 Aligned_cols=59 Identities=8% Similarity=0.089 Sum_probs=44.7
Q ss_pred HHHHHhhC--CCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 12 KRIFQQFD--TNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 12 ~~~F~~~D--~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
.+-|..|+ +-+.|+|+-..-+.++-..+ ++..-+.+|+.-.+. +++|.++..||-..|+
T Consensus 16 ~K~~~qF~~Lkp~~gfitg~qArnfflqS~----LP~~VLaqIWALsDl------dkDGrmdi~EfSIAmk 76 (1118)
T KOG1029|consen 16 QKHDAQFGQLKPGQGFITGDQARNFFLQSG----LPTPVLAQIWALSDL------DKDGRMDIREFSIAMK 76 (1118)
T ss_pred HHHHHHHhccCCCCCccchHhhhhhHHhcC----CChHHHHHHHHhhhc------CccccchHHHHHHHHH
Confidence 34455555 35789999988888776544 577777788888777 9999999999977555
No 157
>PRK01844 hypothetical protein; Provisional
Probab=46.80 E-value=55 Score=18.76 Aligned_cols=34 Identities=12% Similarity=0.319 Sum_probs=28.3
Q ss_pred CCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 035984 22 RDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVF 57 (104)
Q Consensus 22 ~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~ 57 (104)
.+--|+.+-++.++...| .++++..++++...+.
T Consensus 35 ~NPpine~mir~Mm~QMG--qkPSekki~Q~m~~mk 68 (72)
T PRK01844 35 KNPPINEQMLKMMMMQMG--QKPSQKKINQMMSAMN 68 (72)
T ss_pred HCCCCCHHHHHHHHHHhC--CCccHHHHHHHHHHHH
Confidence 344688888999999999 8999999999888763
No 158
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=46.30 E-value=6.2 Score=24.59 Aligned_cols=53 Identities=23% Similarity=0.334 Sum_probs=29.5
Q ss_pred CCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 22 RDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 22 ~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
-||.|+.+|...+...+.....++......++..+.. .....+++.+|+..+.
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~~l~ 88 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADE------LKQEPIDLEELLRELR 88 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCH------HHHHCCHHHHHHHHHC
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH------HHhccccHHHHHHHHH
Confidence 5888999988877665521134555666666655543 2333566666665444
No 159
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=46.12 E-value=42 Score=22.59 Aligned_cols=37 Identities=14% Similarity=0.195 Sum_probs=23.2
Q ss_pred CCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 035984 19 DTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVF 57 (104)
Q Consensus 19 D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~ 57 (104)
..+.+|+++.+|+...+..-+ ..++.+++.+++..-+
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~--~~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKG--LWVTEEDIREVVETDD 62 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT---TT--HHHHHHHHHH-S
T ss_pred ccCCCCCEeHHHHHHHHHHcC--CCCCHHHHHHHHhhCC
Confidence 468899999999998877655 6678888888887643
No 160
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=45.12 E-value=44 Score=17.19 Aligned_cols=32 Identities=25% Similarity=0.377 Sum_probs=18.5
Q ss_pred CCCcccHHHHHHHHHHhC-CCCCCCHHHHHHHHHH
Q 035984 22 RDGGLNREEMAALLVAVN-PRVEFSDEQINAIIDE 55 (104)
Q Consensus 22 ~~G~Is~~el~~~l~~l~-~~~~~~~~~~~~l~~~ 55 (104)
..|.|+ ++..++..+. .|..++++.++.+++.
T Consensus 14 ~~GlI~--~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 14 RRGLIS--EVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HcCChh--hHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 456776 4444444432 3377777777766654
No 161
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=45.05 E-value=75 Score=19.76 Aligned_cols=43 Identities=16% Similarity=0.240 Sum_probs=32.5
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 035984 13 RIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVF 57 (104)
Q Consensus 13 ~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~ 57 (104)
.+|-++-.-++..+|.+++..++...+ .......+..+++.+.
T Consensus 5 aAyll~~l~g~~~pta~dI~~IL~AaG--vevd~~~~~~f~~~L~ 47 (113)
T PLN00138 5 AAYLLAVLGGNTCPSAEDLKDILGSVG--ADADDDRIELLLSEVK 47 (113)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHcC--CcccHHHHHHHHHHHc
Confidence 344444456677799999999999988 8888887777777763
No 162
>PF14069 SpoVIF: Stage VI sporulation protein F
Probab=44.77 E-value=63 Score=18.82 Aligned_cols=31 Identities=16% Similarity=0.221 Sum_probs=18.0
Q ss_pred CCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHH
Q 035984 42 VEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTY 79 (104)
Q Consensus 42 ~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~ 79 (104)
.+++.+..++++..+-. ++- +.++..+..+|
T Consensus 46 ~~Vs~~~ed~IV~~I~~------~~~-p~d~~~l~Km~ 76 (79)
T PF14069_consen 46 KPVSKEQEDQIVQAIIN------QKI-PNDMNHLMKMM 76 (79)
T ss_pred CCCCHHHHHHHHHHHHh------CCC-CcCHHHHHHHH
Confidence 56666666666666655 443 55555555544
No 163
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=44.67 E-value=42 Score=19.25 Aligned_cols=44 Identities=25% Similarity=0.427 Sum_probs=28.0
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 035984 9 EKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFR 58 (104)
Q Consensus 9 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~ 58 (104)
..++.+... -...|+||.+++..+|.. ..++.+.+..++..+..
T Consensus 7 ~~i~~Li~~--gK~~G~lT~~eI~~~L~~----~~~~~e~id~i~~~L~~ 50 (82)
T PF03979_consen 7 EAIKKLIEK--GKKKGYLTYDEINDALPE----DDLDPEQIDEIYDTLED 50 (82)
T ss_dssp HHHHHHHHH--HHHHSS-BHHHHHHH-S-----S---HHHHHHHHHHHHT
T ss_pred HHHHHHHHH--HhhcCcCCHHHHHHHcCc----cCCCHHHHHHHHHHHHH
Confidence 445555443 235889999999988873 44778889999998865
No 164
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=44.00 E-value=75 Score=19.89 Aligned_cols=30 Identities=30% Similarity=0.498 Sum_probs=18.8
Q ss_pred cHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 035984 27 NREEMAALLVAVNPRVEFSDEQINAIIDEVFR 58 (104)
Q Consensus 27 s~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~ 58 (104)
+..|+..++..-+ ..+++++++++++-+++
T Consensus 81 t~~ElRsIla~e~--~~~s~E~l~~Ildiv~K 110 (114)
T COG1460 81 TPDELRSILAKER--VMLSDEELDKILDIVDK 110 (114)
T ss_pred CHHHHHHHHHHcc--CCCCHHHHHHHHHHHHH
Confidence 4566666666655 56667777776665543
No 165
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=43.79 E-value=72 Score=19.63 Aligned_cols=11 Identities=36% Similarity=0.767 Sum_probs=4.1
Q ss_pred CCHHHHHHHHH
Q 035984 44 FSDEQINAIID 54 (104)
Q Consensus 44 ~~~~~~~~l~~ 54 (104)
+++++++++++
T Consensus 95 ~~~e~l~~ILd 105 (112)
T PRK14981 95 LSPEELDEILD 105 (112)
T ss_pred CCHHHHHHHHH
Confidence 33333333333
No 166
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=43.38 E-value=47 Score=16.99 Aligned_cols=42 Identities=19% Similarity=0.322 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 035984 7 RLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVF 57 (104)
Q Consensus 7 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~ 57 (104)
+...|...|.. +.+.+..++..+...++ ++...|..+|..--
T Consensus 11 ~~~~Le~~f~~-----~~~P~~~~~~~la~~~~----l~~~qV~~WF~nrR 52 (59)
T cd00086 11 QLEELEKEFEK-----NPYPSREEREELAKELG----LTERQVKIWFQNRR 52 (59)
T ss_pred HHHHHHHHHHh-----CCCCCHHHHHHHHHHHC----cCHHHHHHHHHHHH
Confidence 45567777764 66899999998888766 68888888887653
No 167
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=42.43 E-value=78 Score=24.65 Aligned_cols=33 Identities=24% Similarity=0.420 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhC
Q 035984 7 RLEKVKRIFQQFDTNRDGGLNREEMAALLVAVN 39 (104)
Q Consensus 7 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~ 39 (104)
..+.|+.+-+..|.|.+|.|+.+|=..+++.-.
T Consensus 66 g~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdm 98 (575)
T KOG4403|consen 66 GYEAIRDIHRQMDDDHNGSIDVEESDEFLREDM 98 (575)
T ss_pred hHHHHHHHHHhcccccCCCcccccchHHHHHHh
Confidence 346788889999999999999999888888643
No 168
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=42.09 E-value=60 Score=21.82 Aligned_cols=34 Identities=12% Similarity=0.263 Sum_probs=27.3
Q ss_pred CCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 035984 20 TNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDE 55 (104)
Q Consensus 20 ~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~ 55 (104)
.|.+|++..+++...++.-. ..++.+.+.+++..
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~--~~~t~~~l~~vV~~ 61 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAY--KWVTRELLEAVVES 61 (179)
T ss_pred cCCCCCEEHHHHHHHHHHcc--CCCCHHHHHHHHHc
Confidence 47899999999998887544 56788888887765
No 169
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=41.88 E-value=50 Score=22.50 Aligned_cols=72 Identities=17% Similarity=0.276 Sum_probs=44.5
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHhccCC
Q 035984 8 LEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYDDGAG 84 (104)
Q Consensus 8 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~~~~~ 84 (104)
.+.++.+|..||++.=-..+.+++..++.--+ .-=....++.++.......+. ....=+|.+|+.-+.++..
T Consensus 54 Re~freaF~~Fd~~kVA~~~~~dverLl~d~g--IIR~r~KI~A~i~NA~~~l~l---~~e~Gsf~~flWsf~~~~~ 125 (188)
T COG2818 54 REAFREAFHGFDPEKVAAMTEEDVERLLADAG--IIRNRGKIKATINNARAVLEL---QKEFGSFSEFLWSFVGGKP 125 (188)
T ss_pred HHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcc--hhhhHHHHHHHHHHHHHHHHH---HHHcCCHHHHHHHhcCCCc
Confidence 35688999999999999999999999888655 322334555544433221111 1122356777766654443
No 170
>PF06207 DUF1002: Protein of unknown function (DUF1002); InterPro: IPR009343 This protein family has no known function. Its members are about 300 amino acids in length. It has so far been detected in Firmicute bacteria and some archaebacteria.
Probab=40.70 E-value=1.2e+02 Score=21.27 Aligned_cols=47 Identities=19% Similarity=0.291 Sum_probs=28.3
Q ss_pred cHHHHHHHHHHhC--CCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHH
Q 035984 27 NREEMAALLVAVN--PRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTY 79 (104)
Q Consensus 27 s~~el~~~l~~l~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~ 79 (104)
+.+++..++.... .+..++++.++.++..+.. -.+-.+++.+|..-+
T Consensus 173 t~~eI~~IV~~~~~~~~i~ls~~q~~~i~~l~~~------~~~~~~~~~~~k~ql 221 (225)
T PF06207_consen 173 TDEEIRNIVNNVLNNYNINLSDEQIQQIVNLMKK------IQNLNIDWKQVKEQL 221 (225)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH------HHcCCCCHHHHHHHH
Confidence 6666666555432 3366777777777776666 455556666666543
No 171
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=40.69 E-value=62 Score=17.61 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=24.3
Q ss_pred CcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 035984 24 GGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFR 58 (104)
Q Consensus 24 G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~ 58 (104)
-.+|.+|+...+..++ ..++..++-.++..+..
T Consensus 8 ~~lTeEEl~~~i~~L~--~~~~~~dm~~IW~~v~~ 40 (61)
T TIGR01639 8 KKLSKEELNELINSLD--EIPNRNDMLIIWNQVHG 40 (61)
T ss_pred HHccHHHHHHHHHhhc--CCCCHHHHHHHHHHHHH
Confidence 3477888888888887 67777777777776654
No 172
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=40.51 E-value=43 Score=21.85 Aligned_cols=30 Identities=13% Similarity=0.261 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 035984 8 LEKVKRIFQQFDTNRDGGLNREEMAALLVA 37 (104)
Q Consensus 8 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~ 37 (104)
.+.+..-....|.++.+|+|.++++.++-.
T Consensus 68 Lq~L~~rL~~le~~rg~Y~TiSeLKT~vy~ 97 (148)
T PF12486_consen 68 LQQLADRLNQLEEQRGKYMTISELKTAVYQ 97 (148)
T ss_pred HHHHHHHHHHHHHhcCCceeHHHHHHHHHH
Confidence 345555667788889999999999986554
No 173
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.85 E-value=84 Score=20.08 Aligned_cols=45 Identities=16% Similarity=0.306 Sum_probs=32.6
Q ss_pred CCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCce
Q 035984 21 NRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGL 70 (104)
Q Consensus 21 d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I 70 (104)
+..|.||.+|-..+|.- . .++..+++.+-++.+....|+ ...|..
T Consensus 51 ~~~~~iTlqEa~qILnV-~--~~ln~eei~k~yehLFevNdk--skGGSF 95 (132)
T KOG3442|consen 51 NSNGKITLQEAQQILNV-K--EPLNREEIEKRYEHLFEVNDK--SKGGSF 95 (132)
T ss_pred cccccccHHHHhhHhCC-C--CCCCHHHHHHHHHHHHhccCc--ccCcce
Confidence 34577998888877653 2 478889999999988886666 444553
No 174
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=39.71 E-value=33 Score=20.13 Aligned_cols=36 Identities=19% Similarity=0.414 Sum_probs=20.7
Q ss_pred CCCcccHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHH
Q 035984 22 RDGGLNREEMAALLVAVNPRVEF---SDEQINAIIDEVF 57 (104)
Q Consensus 22 ~~G~Is~~el~~~l~~l~~~~~~---~~~~~~~l~~~~~ 57 (104)
-||.++..|...+.+.+.....+ ....+..++....
T Consensus 15 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~ 53 (111)
T cd07176 15 ADGDIDDAELQAIEALLRSLPVLSGFDRERLIALLDKLL 53 (111)
T ss_pred hccCCCHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHH
Confidence 47888888888777665411223 3344455555444
No 175
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=38.99 E-value=27 Score=26.09 Aligned_cols=32 Identities=19% Similarity=0.264 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 035984 6 SRLEKVKRIFQQFDTNRDGGLNREEMAALLVA 37 (104)
Q Consensus 6 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~ 37 (104)
......++.|..+|.|++-.||..|+...+..
T Consensus 367 ~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 367 KPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred cHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 34556778999999999999999999987664
No 176
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=38.49 E-value=73 Score=18.14 Aligned_cols=45 Identities=22% Similarity=0.259 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 035984 5 GSRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIID 54 (104)
Q Consensus 5 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~ 54 (104)
|...+.++.-|.. .=+.|+..|+..+-+.+-. .+++.++++++.+
T Consensus 12 G~~~e~vk~~F~~----~~~~Vs~~EI~~~Eq~Li~-eG~~~eeiq~LCd 56 (71)
T PF04282_consen 12 GEDPEEVKEEFKK----LFSDVSASEISAAEQELIQ-EGMPVEEIQKLCD 56 (71)
T ss_pred CCCHHHHHHHHHH----HHCCCCHHHHHHHHHHHHH-cCCCHHHHHHHhH
Confidence 3334444444441 2233555555555444321 3455555555544
No 177
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=37.78 E-value=85 Score=18.28 Aligned_cols=53 Identities=15% Similarity=0.226 Sum_probs=31.4
Q ss_pred CCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHhc
Q 035984 22 RDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYDD 81 (104)
Q Consensus 22 ~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~~ 81 (104)
-||.++..|...+-..+.. ...+....+.+...+.. ......++.+|...+..
T Consensus 12 aDG~v~~~E~~~i~~~l~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~ 64 (106)
T cd07316 12 ADGRVSEAEIQAARALMDQ-MGLDAEARREAIRLFNE------GKESDFGLEEYARQFRR 64 (106)
T ss_pred ccCCcCHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH------hCcCCCCHHHHHHHHHH
Confidence 4788999887775544431 23344455556555554 33333677887776663
No 178
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=37.54 E-value=83 Score=20.66 Aligned_cols=47 Identities=17% Similarity=0.312 Sum_probs=28.0
Q ss_pred cHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHH
Q 035984 27 NREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLR 77 (104)
Q Consensus 27 s~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~ 77 (104)
+++|+-+.++..- ..+++++.+++++.+....+. ......|.+|-++
T Consensus 2 ~k~efL~~L~~~L--~~lp~~e~~e~l~~Y~e~f~d--~~~~G~sEeeii~ 48 (181)
T PF08006_consen 2 NKNEFLNELEKYL--KKLPEEEREEILEYYEEYFDD--AGEEGKSEEEIIA 48 (181)
T ss_pred CHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHH--hhhCCCCHHHHHH
Confidence 4566666666544 467888888887777654432 2333445555444
No 179
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=37.17 E-value=84 Score=18.10 Aligned_cols=47 Identities=9% Similarity=0.052 Sum_probs=35.7
Q ss_pred CCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 21 NRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 21 d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
-+.|-|+.++...+.. .+.+.+..+++++.+.. .|...|.-|+..++
T Consensus 25 ~~~~Vit~e~~~~I~a-----~~T~~~kar~Lld~l~~--------kG~~A~~~F~~~L~ 71 (82)
T cd08330 25 HGKKVITQEQYSEVRA-----EKTNQEKMRKLFSFVRS--------WGASCKDIFYQILR 71 (82)
T ss_pred HHCCCCCHHHHHHHHc-----CCCcHHHHHHHHHHHHc--------cCHHHHHHHHHHHH
Confidence 3567899888887655 34567888889988854 67888899988776
No 180
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.15 E-value=74 Score=21.44 Aligned_cols=65 Identities=17% Similarity=0.234 Sum_probs=42.9
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHH
Q 035984 8 LEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTY 79 (104)
Q Consensus 8 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~ 79 (104)
.+.++.+|.-||...=-..+.+++..++..-+ .--....++.++......... .. + +|.+|+.-+
T Consensus 52 r~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~--IIRnr~KI~Avi~NA~~~l~i--~~-e--sf~~ylW~f 116 (179)
T TIGR00624 52 RENYRRAFSGFDIVKVARMTDADVERLLQDDG--IIRNRGKIEATIANARAALQL--EQ-N--DLVEFLWSF 116 (179)
T ss_pred HHHHHHHHcCCCHHHHhCCCHHHHHHHhcCcc--chhhHHHHHHHHHHHHHHHHH--HH-c--cHHHHHHhc
Confidence 45688999999999888889999988887533 323345566666543332222 11 2 888888655
No 181
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=36.60 E-value=61 Score=24.44 Aligned_cols=66 Identities=8% Similarity=-0.033 Sum_probs=43.1
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHhccCC
Q 035984 10 KVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYDDGAG 84 (104)
Q Consensus 10 ~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~~~~~ 84 (104)
.+.+....+|..+.|.++.--.+.++..+. .+---+.++-++..+. +..|-+.+-.|.++....+.
T Consensus 111 llaflLaA~ds~~~g~~~vfavkialatlc--~gk~~dklryIfs~is-------ds~gim~~i~~~~fl~evls 176 (434)
T KOG4301|consen 111 LLAFLLAAEDSEGQGKQQVFAVKIALATLC--GGKIKDKLRYIFSLIS-------DSRGIMQEIQRDQFLHEVLS 176 (434)
T ss_pred HHHHHHhhcCccCCCCceeecchhhhhhhc--cchHHHHHHHHHHHHc-------cchHHHHHHHHHHHHHHHHc
Confidence 355566789999999999888888888776 3333445555666554 45666666666655554433
No 182
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=35.33 E-value=42 Score=27.89 Aligned_cols=47 Identities=11% Similarity=0.243 Sum_probs=36.5
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 035984 10 KVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFR 58 (104)
Q Consensus 10 ~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~ 58 (104)
.+.++.++||...+|.|..-+|+-.+-.+. ..+.++.+.-+|..+..
T Consensus 471 ~lN~llNvyD~~R~g~irvls~ki~~i~lc--k~~leek~~ylF~~vA~ 517 (966)
T KOG4286|consen 471 CLNWLLNVYDTGRTGRIRVLSFKIGIISLC--KAHLEDKYRYLFKQVAS 517 (966)
T ss_pred HHHHHHHhcccCCCcceEEeeehhhHHHHh--cchhHHHHHHHHHHHcC
Confidence 567899999999999999999988777766 44556666677776643
No 183
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=34.25 E-value=43 Score=25.28 Aligned_cols=68 Identities=6% Similarity=0.106 Sum_probs=48.7
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHhcc
Q 035984 9 EKVKRIFQQFDTNRDGGLNREEMAALLVAVNPR-VEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYDDG 82 (104)
Q Consensus 9 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~~~ 82 (104)
.+|+..|..+=.+.++......+..+-..+... .+.=..++--||..++. +.++.|+..|...++.+.
T Consensus 211 ~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~------N~Dl~Ld~sEl~~I~ldk 279 (434)
T KOG3555|consen 211 NRLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDT------NYDLLLDQSELRAIELDK 279 (434)
T ss_pred HHHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhcccc------ccccccCHHHhhhhhccC
Confidence 467788887777777776665555554444311 22335788889999999 999999999999988743
No 184
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=33.91 E-value=39 Score=22.45 Aligned_cols=65 Identities=11% Similarity=0.272 Sum_probs=36.3
Q ss_pred HHHHHHhhCCCC----CCc-ccHHHHHHHHHHhC--CCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHhc
Q 035984 11 VKRIFQQFDTNR----DGG-LNREEMAALLVAVN--PRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYDD 81 (104)
Q Consensus 11 l~~~F~~~D~d~----~G~-Is~~el~~~l~~l~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~~ 81 (104)
+...|+.|-+-+ +|. ++-..+...|+..+ -|..++.-.+.-+|..+.. .....|+|++|...+..
T Consensus 14 ~~~~f~~Fa~fGd~~asg~em~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg------~~~~~~tf~~fkkal~e 85 (180)
T KOG4070|consen 14 LEESFRAFAKFGDSKASGTEMNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKG------KKARTITFEEFKKALEE 85 (180)
T ss_pred HHHHHHHHHHcCCccccccccccccHHHHHhhcCcccCCcccccccceeeeeccc------cccccccHHHHHHHHHH
Confidence 555666665444 332 44455666777654 2233444444445555544 45678999999776653
No 185
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=32.71 E-value=67 Score=21.82 Aligned_cols=67 Identities=18% Similarity=0.320 Sum_probs=42.5
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHH
Q 035984 8 LEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTY 79 (104)
Q Consensus 8 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~ 79 (104)
.+.++.+|.-||.+.=-..+.+++..++..-+ .--....++.++.......+. .. ..-+|.+|+.-+
T Consensus 53 re~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~--IIRnr~KI~Avi~NA~~~l~i--~~-e~gSf~~ylW~f 119 (187)
T PRK10353 53 RENYRACFHQFDPVKVAAMQEEDVERLVQDAG--IIRHRGKIQAIIGNARAYLQM--EQ-NGEPFADFVWSF 119 (187)
T ss_pred HHHHHHHHcCCCHHHHhCCCHHHHHHHhcCch--hHHhHHHHHHHHHHHHHHHHH--HH-hcCCHHHHHhhc
Confidence 45688999999998888888999988877533 222345666666533322211 11 234788888654
No 186
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=32.51 E-value=1.3e+02 Score=19.03 Aligned_cols=51 Identities=24% Similarity=0.276 Sum_probs=37.0
Q ss_pred CCCcccHHHHHHHHHHhC-----CC--CCCCHHHHHHHHHHHHhhcCcccCCCC-ceeHHHHHHH
Q 035984 22 RDGGLNREEMAALLVAVN-----PR--VEFSDEQINAIIDEVFRTYGEFIDGEK-GLTYDGLLRT 78 (104)
Q Consensus 22 ~~G~Is~~el~~~l~~l~-----~~--~~~~~~~~~~l~~~~~~~~~~~~~~~g-~I~~~eF~~~ 78 (104)
++-.||.+||..++..-. .| +.++.++++++.+.+.. ...+ .++..|-+++
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~------~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEK------APKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHh------ccccCCCCHHHHHHH
Confidence 567899999999888632 00 25678888888888877 4544 4888887764
No 187
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=31.67 E-value=81 Score=17.22 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=18.5
Q ss_pred cccHHHHHHHHHHhCCCCCCCHHHHHHH
Q 035984 25 GLNREEMAALLVAVNPRVEFSDEQINAI 52 (104)
Q Consensus 25 ~Is~~el~~~l~~l~~~~~~~~~~~~~l 52 (104)
.|+.+||..+++... ...+.+++.+.
T Consensus 29 ~it~~DF~~Al~~~k--pSVs~~dl~~y 54 (62)
T PF09336_consen 29 PITMEDFEEALKKVK--PSVSQEDLKKY 54 (62)
T ss_dssp HBCHHHHHHHHHTCG--GSS-HHHHHHH
T ss_pred CCCHHHHHHHHHHcC--CCCCHHHHHHH
Confidence 478899999999876 55677766553
No 188
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=31.54 E-value=69 Score=17.01 Aligned_cols=31 Identities=19% Similarity=0.302 Sum_probs=20.9
Q ss_pred CCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 035984 22 RDGGLNREEMAALLVAVNPRVEFSDEQINAIID 54 (104)
Q Consensus 22 ~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~ 54 (104)
..|.|+..||..-+.... ..-+..++..++.
T Consensus 20 a~GrL~~~Ef~~R~~~a~--~A~t~~eL~~l~~ 50 (53)
T PF08044_consen 20 AEGRLSLDEFDERLDAAY--AARTRGELDALFA 50 (53)
T ss_pred HCCCCCHHHHHHHHHHHH--hcCcHHHHHHHHc
Confidence 578899999888766654 3455566665553
No 189
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=31.17 E-value=61 Score=27.44 Aligned_cols=61 Identities=15% Similarity=0.311 Sum_probs=41.8
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 11 VKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDE-QINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 11 l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
++..|-..|......|+..+++.++..++ ..++.. .+.+-+.+.. ...+.++|++|..+|.
T Consensus 146 lrk~~ysvd~~~~~~isard~k~~l~qvn--~k~~~~kfl~e~~ted~-------~~k~dlsf~~f~~ly~ 207 (1267)
T KOG1264|consen 146 LRKQIYSVDQTRENSISARDLKTILPQVN--FKVSSAKFLKEKFTEDG-------ARKDDLSFEQFHLLYK 207 (1267)
T ss_pred HHhhheeccchhhhheeHHhhhcccccce--EEechHHHHHHHHhHhh-------hccccccHHHHHHHHH
Confidence 34455566777778899999999988777 555543 3323333332 4678899999999886
No 190
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=30.93 E-value=56 Score=29.35 Aligned_cols=68 Identities=12% Similarity=0.196 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHH
Q 035984 5 GSRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRV--EFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTY 79 (104)
Q Consensus 5 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~ 79 (104)
....+....++..||++..|+|+..++..+++.+.+.. ..+.+. + .+.-.|.. ..++.|++.+-+-++
T Consensus 1413 ~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~--k---li~mdmp~--~~gd~V~f~d~L~aL 1482 (1592)
T KOG2301|consen 1413 EDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR--K---LISMDLPM--VSGDRVHCLDILFAL 1482 (1592)
T ss_pred cccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc--e---eeeeecCc--CCCCeeehhhHHHHH
Confidence 34567889999999999999999999999999876212 222222 2 22222233 677888888855544
No 191
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=30.61 E-value=82 Score=15.96 Aligned_cols=31 Identities=19% Similarity=0.452 Sum_probs=22.8
Q ss_pred HHHHHHHHHhhCC--CCCCcccHHHHHHHHHHh
Q 035984 8 LEKVKRIFQQFDT--NRDGGLNREEMAALLVAV 38 (104)
Q Consensus 8 ~~~l~~~F~~~D~--d~~G~Is~~el~~~l~~l 38 (104)
...|-..|+.|-. .....++..|++.++..-
T Consensus 5 i~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~E 37 (44)
T PF01023_consen 5 IETIIDVFHKYAGKEGDKDTLSKKELKELLEKE 37 (44)
T ss_dssp HHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCeEcHHHHHHHHHHH
Confidence 3457778888863 345679999999988753
No 192
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=30.45 E-value=1.1e+02 Score=17.40 Aligned_cols=43 Identities=19% Similarity=0.273 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHH
Q 035984 28 REEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTY 79 (104)
Q Consensus 28 ~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~ 79 (104)
..++...|. | .+++.+.+.+.+..++.. ..-+.++-+||+.++
T Consensus 44 i~~le~~L~--G--~~~~~~~i~~~l~~~~~~-----~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 44 IEELEEALI--G--CPYDREAIKEALNSVDLE-----DYFGNISVEELIELL 86 (86)
T ss_dssp HHHHHHHHT--T--CBSSHHHHHHHHHHCHGG-----GTCCTHHHHHHHHHH
T ss_pred HHHHHHHHH--h--cCCCHHHHHHHHHHhCHh-----hccccCCHHHHHHhC
Confidence 455555554 5 788999999999988551 344688889988753
No 193
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=30.10 E-value=1.3e+02 Score=17.99 Aligned_cols=37 Identities=11% Similarity=0.140 Sum_probs=21.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHH
Q 035984 40 PRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLR 77 (104)
Q Consensus 40 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~ 77 (104)
.|..+..+.+.+.+..++....=+ ...|+|+.+.|.+
T Consensus 21 rGi~v~~~~L~~f~~~i~~~~PWF-~~eG~l~~~~W~k 57 (90)
T PF02337_consen 21 RGIRVKKKDLINFLSFIDKVCPWF-PEEGTLDLDNWKK 57 (90)
T ss_dssp CT----HHHHHHHHHHHHHHTT-S-S--SS-HHHHHHH
T ss_pred cCeeecHHHHHHHHHHHHHhCCCC-CCCCCcCHHHHHH
Confidence 447888888888888777655533 5667898888766
No 194
>PF11363 DUF3164: Protein of unknown function (DUF3164); InterPro: IPR021505 This entry is represented by Bacteriophage B3, Orf6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=29.44 E-value=1.9e+02 Score=19.72 Aligned_cols=41 Identities=22% Similarity=0.431 Sum_probs=28.0
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 035984 13 RIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFR 58 (104)
Q Consensus 13 ~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~ 58 (104)
-+-+.|.+|..|.|+...+..+.+ ....++.-.+-++++..
T Consensus 123 lV~~af~~dk~G~l~~~rIl~Lrr-----l~i~D~~w~~am~aI~d 163 (195)
T PF11363_consen 123 LVNRAFQVDKEGNLNTSRILGLRR-----LEIDDERWQEAMDAIKD 163 (195)
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHh-----ccCCCHHHHHHHHHHHh
Confidence 345566789999999888776544 34556666666666654
No 195
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=29.40 E-value=1.3e+02 Score=17.70 Aligned_cols=47 Identities=9% Similarity=0.084 Sum_probs=34.0
Q ss_pred CCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHhc
Q 035984 22 RDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYDD 81 (104)
Q Consensus 22 ~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~~ 81 (104)
..|-+|.++...+-. .+...+...++++.+.. -|.-.|..|+.++++
T Consensus 31 ~~gvlt~~~~~~I~~-----~~t~~~k~~~Lld~L~~--------RG~~AF~~F~~aL~~ 77 (90)
T cd08332 31 QKDILTDSMAESIMA-----KPTSFSQNVALLNLLPK--------RGPRAFSAFCEALRE 77 (90)
T ss_pred HcCCCCHHHHHHHHc-----CCCcHHHHHHHHHHHHH--------hChhHHHHHHHHHHh
Confidence 468888887666544 23456777788888755 577889999998874
No 196
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=29.30 E-value=53 Score=18.36 Aligned_cols=29 Identities=14% Similarity=0.283 Sum_probs=13.7
Q ss_pred ccHHHHHHHHHHhC--CCCCCCHHHHHHHHH
Q 035984 26 LNREEMAALLVAVN--PRVEFSDEQINAIID 54 (104)
Q Consensus 26 Is~~el~~~l~~l~--~~~~~~~~~~~~l~~ 54 (104)
+-..++..++..++ .|...+++-+..+|.
T Consensus 40 l~a~~L~~A~~~L~~ItG~~~~ediLd~IFs 70 (73)
T PF12631_consen 40 LVAEDLREALESLGEITGEVVTEDILDNIFS 70 (73)
T ss_dssp HHHHHHHHHHHHHHHHCTSS--HHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 33445666655554 334444555555543
No 197
>PF03874 RNA_pol_Rpb4: RNA polymerase Rpb4; InterPro: IPR005574 The eukaryotic RNA polymerase subunits RPB4 and RPB7 form a heterodimer that reversibly associates with the RNA polymerase II core. Archaeal cells contain a single RNAP made up of about 12 subunits, displaying considerable homology to the eukaryotic RNAPII subunits. The RPB4 and RPB7 homologs are called subunits F and E, respectively, and have been shown to form a stable heterodimer. While the RPB7 homologue is reasonably well conserved, the similarity between the eukaryotic RPB4 and the archaeal F subunit is barely detectable [].; GO: 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3AYH_A 3H3V_E 4A3C_D 3PO3_D 3HOX_D 2R92_D 3HOU_D 1Y77_D 2R7Z_D 3QT1_D ....
Probab=29.01 E-value=97 Score=18.70 Aligned_cols=9 Identities=22% Similarity=0.316 Sum_probs=3.3
Q ss_pred ccHHHHHHH
Q 035984 26 LNREEMAAL 34 (104)
Q Consensus 26 Is~~el~~~ 34 (104)
++..+...+
T Consensus 71 L~~~E~~qi 79 (117)
T PF03874_consen 71 LTEFEILQI 79 (117)
T ss_dssp S-HHHHHHH
T ss_pred CCHHHHHHH
Confidence 444444333
No 198
>PF14164 YqzH: YqzH-like protein
Probab=28.94 E-value=1.1e+02 Score=17.07 Aligned_cols=30 Identities=17% Similarity=0.198 Sum_probs=20.0
Q ss_pred HHHHHHHHhhCCC-CCCcccHHHHHHHHHHh
Q 035984 9 EKVKRIFQQFDTN-RDGGLNREEMAALLVAV 38 (104)
Q Consensus 9 ~~l~~~F~~~D~d-~~G~Is~~el~~~l~~l 38 (104)
..+++.|+.|-.| ..-.+|..|+..++..+
T Consensus 8 Kmi~~~l~QYg~d~~~~pls~~E~~~L~~~i 38 (64)
T PF14164_consen 8 KMIINCLRQYGYDVECMPLSDEEWEELCKHI 38 (64)
T ss_pred HHHHHHHHHhCCcccCCCCCHHHHHHHHHHH
Confidence 3467778888766 55567777776665554
No 199
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=28.74 E-value=1.4e+02 Score=17.89 Aligned_cols=46 Identities=11% Similarity=0.195 Sum_probs=34.3
Q ss_pred CCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 22 RDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 22 ~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
++|.||.++...+-. .+.+.+.+.++++.+.. -|.-.|.-|+..++
T Consensus 32 ~~gIlT~~~~e~I~a-----~~T~~~k~~~LLdiLp~--------RG~~AF~~F~~aL~ 77 (94)
T cd08327 32 QEGILTESHVEEIES-----QTTSRRKTMKLLDILPS--------RGPKAFHAFLDSLE 77 (94)
T ss_pred hCCCCCHHHHHHHHc-----cCChHHHHHHHHHHHHh--------hChhHHHHHHHHHH
Confidence 578899888877654 33456777788888754 57788999999877
No 200
>PF11197 DUF2835: Protein of unknown function (DUF2835); InterPro: IPR021363 This is a bacterial family of uncharacterised proteins. One member of this family (A4VM42 from SWISSPROT) is annotated as the A subunit of Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV).
Probab=28.49 E-value=28 Score=19.68 Aligned_cols=16 Identities=25% Similarity=0.588 Sum_probs=12.9
Q ss_pred ceeHHHHHHHHhccCC
Q 035984 69 GLTYDGLLRTYDDGAG 84 (104)
Q Consensus 69 ~I~~~eF~~~~~~~~~ 84 (104)
.|++++|+.+|+..+.
T Consensus 6 ~is~~~~l~~Y~G~a~ 21 (68)
T PF11197_consen 6 NISYQEFLAYYQGAAS 21 (68)
T ss_pred EcCHHHHHHhcccccc
Confidence 5899999999985444
No 201
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=27.84 E-value=1.5e+02 Score=18.10 Aligned_cols=30 Identities=20% Similarity=0.399 Sum_probs=26.0
Q ss_pred ccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 035984 26 LNREEMAALLVAVNPRVEFSDEQINAIIDEVF 57 (104)
Q Consensus 26 Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~ 57 (104)
||.+++..+|...+ .......+..+++.+.
T Consensus 17 ~ta~~I~~IL~aaG--veVe~~~~~~~~~aLa 46 (105)
T cd04411 17 LTEDKIKELLSAAG--AEIEPERVKLFLSALN 46 (105)
T ss_pred CCHHHHHHHHHHcC--CCcCHHHHHHHHHHHc
Confidence 99999999999988 8888888888877763
No 202
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=27.61 E-value=1.3e+02 Score=17.45 Aligned_cols=30 Identities=20% Similarity=0.339 Sum_probs=19.9
Q ss_pred ccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 035984 26 LNREEMAALLVAVNPRVEFSDEQINAIIDEVF 57 (104)
Q Consensus 26 Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~ 57 (104)
|+.+++..+.+... ..++++++.++...+.
T Consensus 1 i~~~~v~~lA~La~--L~l~eee~~~~~~~l~ 30 (93)
T TIGR00135 1 ISDEEVKHLAKLAR--LELSEEEAESFAGDLD 30 (93)
T ss_pred CCHHHHHHHHHHhC--CCCCHHHHHHHHHHHH
Confidence 46677777766555 7788888766555443
No 203
>TIGR00988 hip integration host factor, beta subunit. This protein forms a site-specific DNA-binding heterodimer with the homologous integration host factor alpha subunit. It is closely related to the DNA-binding protein HU.
Probab=27.10 E-value=85 Score=18.23 Aligned_cols=47 Identities=4% Similarity=0.206 Sum_probs=25.5
Q ss_pred cHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcC-cccCCCCceeHHHHH
Q 035984 27 NREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYG-EFIDGEKGLTYDGLL 76 (104)
Q Consensus 27 s~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~g~I~~~eF~ 76 (104)
+..||...+..-. ..++...+..+++.+...+. .+ ..++.|.+.+|=
T Consensus 2 ~k~eli~~i~~~~--~~~s~~~v~~vv~~~~~~i~~~L-~~g~~V~l~gfG 49 (94)
T TIGR00988 2 TKSELIERIATQQ--SHLPAKDVEDAVKTMLEHMASAL-AQGDRIEIRGFG 49 (94)
T ss_pred CHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHH-HcCCeEEEcCcE
Confidence 4567777666433 34666666666665543221 11 345667666653
No 204
>PRK00199 ihfB integration host factor subunit beta; Reviewed
Probab=27.08 E-value=82 Score=18.35 Aligned_cols=49 Identities=14% Similarity=0.285 Sum_probs=26.4
Q ss_pred cHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHH
Q 035984 27 NREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLR 77 (104)
Q Consensus 27 s~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~ 77 (104)
+..||...+..-. ..++..++..+++.+...+...-..++.|.+..|=.
T Consensus 2 tk~eli~~ia~~~--~~~s~~~~~~vv~~~~~~i~~~L~~g~~V~l~gfG~ 50 (94)
T PRK00199 2 TKSELIERLAARN--PHLSAKDVENAVKEILEEMSDALARGDRIEIRGFGS 50 (94)
T ss_pred CHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHcCCeEEEcCCEE
Confidence 5567777665433 356777777666655433210003456676666533
No 205
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=26.78 E-value=83 Score=14.80 Aligned_cols=16 Identities=25% Similarity=0.445 Sum_probs=10.8
Q ss_pred CCcccHHHHHHHHHHh
Q 035984 23 DGGLNREEMAALLVAV 38 (104)
Q Consensus 23 ~G~Is~~el~~~l~~l 38 (104)
.|.|+.+++..+....
T Consensus 2 ~~~i~~~~~~d~a~rv 17 (33)
T PF09373_consen 2 SGTISKEEYLDMASRV 17 (33)
T ss_pred CceecHHHHHHHHHHH
Confidence 5677777777766653
No 206
>COG5562 Phage envelope protein [General function prediction only]
Probab=26.57 E-value=82 Score=20.35 Aligned_cols=16 Identities=6% Similarity=0.133 Sum_probs=13.5
Q ss_pred CCCCceeHHHHHHHHh
Q 035984 65 DGEKGLTYDGLLRTYD 80 (104)
Q Consensus 65 ~~~g~I~~~eF~~~~~ 80 (104)
+..|+.+|+||+.-+-
T Consensus 84 ~qsGqttF~ef~~~la 99 (137)
T COG5562 84 HQSGQTTFEEFCSALA 99 (137)
T ss_pred HhcCCccHHHHHHHHH
Confidence 7789999999999543
No 207
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=26.55 E-value=3.2e+02 Score=23.64 Aligned_cols=46 Identities=15% Similarity=0.233 Sum_probs=31.5
Q ss_pred CcccHHH-----HHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 24 GGLNREE-----MAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 24 G~Is~~e-----l~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
..|.+++ |..++..+. +..+++++|..+.. +..-.+|.++|+.+++
T Consensus 198 dsI~~d~f~~e~f~~~l~klc-----pR~eie~iF~ki~~------~~kpylT~~ql~dfln 248 (1189)
T KOG1265|consen 198 DSIEPDDFTLEKFYRLLNKLC-----PRPEIEEIFRKISG------KKKPYLTKEQLVDFLN 248 (1189)
T ss_pred CccChhhccHHHHHHHHHhcC-----CchhHHHHHHHhcc------CCCccccHHHHHHHHh
Confidence 4455554 334444444 34688899999976 6667899999988776
No 208
>PF01369 Sec7: Sec7 domain; InterPro: IPR000904 The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ]. The 3D structure of the domain displays several alpha-helices []. It was found to be associated with other domains involved in guanine nucleotide exchange (e.g., CDC25, Dbl) in mammalian factors [].; GO: 0005086 ARF guanyl-nucleotide exchange factor activity, 0032012 regulation of ARF protein signal transduction, 0005622 intracellular; PDB: 3SWV_A 3L8N_A 2R09_A 2R0D_B 1RE0_B 3LTL_A 1KU1_A 1XSZ_A 1XT0_B 1R8Q_E ....
Probab=26.17 E-value=1.3e+02 Score=20.02 Aligned_cols=7 Identities=0% Similarity=-0.296 Sum_probs=3.0
Q ss_pred CcccHHH
Q 035984 24 GGLNREE 30 (104)
Q Consensus 24 G~Is~~e 30 (104)
...+.+.
T Consensus 125 ~~~~~d~ 131 (190)
T PF01369_consen 125 PFKSPDT 131 (190)
T ss_dssp SSSSHHH
T ss_pred ccccHhH
Confidence 3444444
No 209
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=25.57 E-value=2.2e+02 Score=20.00 Aligned_cols=36 Identities=11% Similarity=0.278 Sum_probs=31.3
Q ss_pred CCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 035984 21 NRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFR 58 (104)
Q Consensus 21 d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~ 58 (104)
+++|.+....+...+..+- ..++..|+..+-+.+..
T Consensus 163 ~gegQVpL~kL~~~l~KLp--~~lt~~ev~~v~~RL~A 198 (224)
T PF13829_consen 163 NGEGQVPLRKLQKTLMKLP--RNLTKAEVDAVNKRLRA 198 (224)
T ss_pred CCCCceeHHHHHHHHHhCC--ccCCHHHHHHHHHHHHH
Confidence 6899999999999999888 78999999888777765
No 210
>TIGR01201 HU_rel DNA-binding protein, histone-like, putative. This model describes a set of proteins related to but longer than DNA-binding protein HU. Its distinctive domain architecture compared to HU and related histone-like DNA-binding proteins justifies the designation as superfamily. Members include, so far, one from Bacteroides fragilis, a gut bacterium, and ten from Porphyromonas gingivalis, an oral anaerobe.
Probab=25.53 E-value=92 Score=19.96 Aligned_cols=51 Identities=20% Similarity=0.320 Sum_probs=33.2
Q ss_pred CCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHH
Q 035984 22 RDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGL 75 (104)
Q Consensus 22 ~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF 75 (104)
..|.++.++|.+.+.... .++..++..+++++...+...-...+.|.+.+|
T Consensus 27 ~~~~mt~~el~~~Ia~~s---~~s~~dv~~vl~~l~~~i~~~L~~G~~V~L~gf 77 (145)
T TIGR01201 27 KSGVIDFEEIAELIAEES---SLSPGDVKGIIDRLAYVLRRELANGKTVRLGEI 77 (145)
T ss_pred eCCCcCHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHHHHHHhCCCeEEeCCC
Confidence 356899999998877644 468888888777765544210034556666665
No 211
>cd07177 terB_like tellurium resistance terB-like protein. This family consists of tellurium resistance terB proteins, N-terminal domain of heat shock DnaJ-like proteins, N-terminal domain of Mo-dependent nitrogenase-like proteins, C-terminal domain of ABC transporter ATP-binding proteins, C-terminal domain of serine/threonine protein kinase, and many hypothetical bacterial proteins. The function of this family is unknown.
Probab=25.49 E-value=1.4e+02 Score=16.90 Aligned_cols=35 Identities=23% Similarity=0.308 Sum_probs=19.5
Q ss_pred CCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 035984 22 RDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEV 56 (104)
Q Consensus 22 ~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~ 56 (104)
-||.|+.+|...+...+.....++....+++...+
T Consensus 12 aDG~i~~~E~~~i~~~~~~~~~~~~~~~~~~~~~~ 46 (104)
T cd07177 12 ADGRVDEEEIAAIEALLRRLPLLDAEERAELIALL 46 (104)
T ss_pred hcCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 48889999987766554411122444444444443
No 212
>cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins. RNA circularization proteins are capable of circularizing RNA molecules in an ATP-dependent reaction. RNA circularization may protect RNA from exonuclease activity. This model comprises the adenylation domain, the minimal catalytic unit that is common to all members of the ATP-dependent DNA ligase family, and the carboxy-terminal extension of RNA circularization protein that serves as a dimerization module. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation domain binds ATP and contains many active site residues.
Probab=25.35 E-value=1.3e+02 Score=22.31 Aligned_cols=42 Identities=26% Similarity=0.249 Sum_probs=28.1
Q ss_pred HHhhCCCCCCcccHHHHHHHHHHhCCCCCC----------CHHHHHHHHHHHHh
Q 035984 15 FQQFDTNRDGGLNREEMAALLVAVNPRVEF----------SDEQINAIIDEVFR 58 (104)
Q Consensus 15 F~~~D~d~~G~Is~~el~~~l~~l~~~~~~----------~~~~~~~l~~~~~~ 58 (104)
|+.++.+..+.++..+...++..++ .+. ...+++++++.+..
T Consensus 131 FDI~~~~~~~~lp~~eR~~lLe~lg--~~~v~~~~~~~~~d~~~l~~~l~~~~~ 182 (342)
T cd07894 131 FDIRKKNTGRPLPVEERRELLEKYG--LPTVRLFGEFTADEIEELKEIIRELDK 182 (342)
T ss_pred EeeEEcCCCCCCCHHHHHHHHHhcC--CCCcceEEEEecCCHHHHHHHHHHHHH
Confidence 4444455567789999999998876 211 23567777777765
No 213
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.31 E-value=31 Score=28.76 Aligned_cols=62 Identities=19% Similarity=0.277 Sum_probs=48.7
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 9 EKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 9 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
.....+|..+|..++|.|+..+...++..-+ +...-+-+++...+. .+.|.++..+|...++
T Consensus 11 ~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~----L~~qvl~qiws~~d~------~~~g~l~~q~f~~~lr 72 (847)
T KOG0998|consen 11 PLFDQYFKSADPQGDGRITGAEAVAFLSKSG----LPDQVLGQIWSLADS------SGKGFLNRQGFYAALR 72 (847)
T ss_pred chHHHhhhccCcccCCcccHHHhhhhhhccc----cchhhhhcccccccc------ccCCccccccccccch
Confidence 4567789999999999999999888877533 566666677777766 7778899888877555
No 214
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold [].; GO: 0006366 transcription from RNA polymerase II promoter; PDB: 1BH9_A 1BH8_A.
Probab=24.95 E-value=1.4e+02 Score=17.72 Aligned_cols=35 Identities=17% Similarity=0.191 Sum_probs=0.0
Q ss_pred CCCCceeHHHHHHHHhccCCCcchhhhHhhhhhhh
Q 035984 65 DGEKGLTYDGLLRTYDDGAGDVDRDFDAVESKKGA 99 (104)
Q Consensus 65 ~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~~~~~ 99 (104)
.+.+.|+.++|+-++++......+....+.+.+..
T Consensus 50 rg~~~i~~eDl~F~lR~D~~Kl~Rl~~~L~~k~~~ 84 (93)
T PF02269_consen 50 RGSKKIKVEDLLFLLRKDPKKLARLRELLSMKDEI 84 (93)
T ss_dssp -----------------------------------
T ss_pred cccCcCcHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 45678999999999987666666665555555544
No 215
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=24.93 E-value=2e+02 Score=18.63 Aligned_cols=73 Identities=15% Similarity=0.261 Sum_probs=47.0
Q ss_pred CCCHHHHHHHHHHhhCCCCCC---cccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhc-CcccCCCCceeHHHHHHHH
Q 035984 4 RGSRLEKVKRIFQQFDTNRDG---GLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTY-GEFIDGEKGLTYDGLLRTY 79 (104)
Q Consensus 4 ~~~~~~~l~~~F~~~D~d~~G---~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~g~I~~~eF~~~~ 79 (104)
.|+.++-+..+.+.|-.|.-= ..|++|+..+...+. ..++++++..++..+.... +. .-+.+|+..--..++
T Consensus 2 YGT~~Elc~~L~~~y~~dE~l~LlIWT~eDV~~~a~gme--~~lTd~E~~aVL~~I~~~~~~~--~~~~GVs~~~V~el~ 77 (139)
T PF07128_consen 2 YGTVKELCRRLKRDYPNDEPLALLIWTREDVRALADGME--YNLTDDEARAVLARIGDIPEDQ--RHEEGVSSGTVMELI 77 (139)
T ss_pred CCcHHHHHHHHHHhCCCCCeeEEEEecHHHHHHHHhcCC--CCCCHHHHHHHHHHHhcCcccc--chhccccHHHHHHHH
Confidence 567777777777766554422 246888888877555 6789999999999987631 11 233456654444455
Q ss_pred h
Q 035984 80 D 80 (104)
Q Consensus 80 ~ 80 (104)
.
T Consensus 78 ~ 78 (139)
T PF07128_consen 78 R 78 (139)
T ss_pred H
Confidence 4
No 216
>PRK11511 DNA-binding transcriptional activator MarA; Provisional
Probab=24.91 E-value=1.8e+02 Score=17.91 Aligned_cols=49 Identities=14% Similarity=0.262 Sum_probs=30.1
Q ss_pred CCCCCCHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 035984 1 MATRGSRLEKVKRIFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEV 56 (104)
Q Consensus 1 ~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~ 56 (104)
|-.+......+..+......+-...++.+++...+ .++...+.++|...
T Consensus 1 ~~~~~~~~~~i~~~~~~I~~~~~~~~sl~~lA~~~-------g~S~~~l~r~Fk~~ 49 (127)
T PRK11511 1 MSRRNTDAITIHSILDWIEDNLESPLSLEKVSERS-------GYSKWHLQRMFKKE 49 (127)
T ss_pred CCcccccHHHHHHHHHHHHHhcCCCCCHHHHHHHH-------CcCHHHHHHHHHHH
Confidence 33455666777778777777777778877766532 23444444544444
No 217
>PF08708 PriCT_1: Primase C terminal 1 (PriCT-1); InterPro: IPR014820 This alpha helical domain is found at the C-terminal of primases.
Probab=24.70 E-value=1.3e+02 Score=16.37 Aligned_cols=16 Identities=13% Similarity=0.329 Sum_probs=8.7
Q ss_pred CCCCHHHHHHHHHHHH
Q 035984 42 VEFSDEQINAIIDEVF 57 (104)
Q Consensus 42 ~~~~~~~~~~l~~~~~ 57 (104)
.+++..|+..+++.+.
T Consensus 51 ~PL~~~Ev~~i~kSi~ 66 (71)
T PF08708_consen 51 PPLPESEVKAIAKSIA 66 (71)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 4555555555555543
No 218
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=24.19 E-value=97 Score=14.70 Aligned_cols=15 Identities=20% Similarity=0.120 Sum_probs=12.1
Q ss_pred cccHHHHHHHHHHhC
Q 035984 25 GLNREEMAALLVAVN 39 (104)
Q Consensus 25 ~Is~~el~~~l~~l~ 39 (104)
.++..|++..++..+
T Consensus 3 ~l~v~eLk~~l~~~g 17 (35)
T PF02037_consen 3 KLTVAELKEELKERG 17 (35)
T ss_dssp TSHHHHHHHHHHHTT
T ss_pred cCcHHHHHHHHHHCC
Confidence 467788899988877
No 219
>PF03871 RNA_pol_Rpb5_N: RNA polymerase Rpb5, N-terminal domain; InterPro: IPR005571 Prokaryotes contain a single DNA-dependent RNA polymerase (RNAP; 2.7.7.6 from EC) that is responsible for the transcription of all genes, while eukaryotes have three classes of RNAPs (I-III) that transcribe different sets of genes. Each class of RNA polymerase is an assemblage of ten to twelve different polypeptides. Certain subunits of RNAPs, including RPB5 (POLR2E in mammals), are common to all three eukaryotic polymerases. RPB5 plays a role in the transcription activation process. Eukaryotic RPB5 has a bipartite structure consisting of a unique N-terminal region, plus a C-terminal region that is structurally homologous to the prokaryotic RPB5 homologue, subunit H (gene rpoH) (IPR000783 from INTERPRO) [, , , ]. This entry represents the N-terminal domain of eukaryotic RPB5, which has a core structure consisting of 3 layers alpha/beta/alpha []. The N-terminal domain is involved in DNA binding and is part of the jaw module in the RNA pol II structure []. This module is important for positioning the downstream DNA.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 3H0G_Q 1DZF_A 3GTG_E 2VUM_E 3GTP_E 3GTO_E 3S17_E 3S1R_E 1I3Q_E 1I50_E ....
Probab=24.12 E-value=1.2e+02 Score=17.95 Aligned_cols=43 Identities=14% Similarity=0.323 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhhcCccc-------CCCCceeHHHHHHHHhccCCCcchh
Q 035984 47 EQINAIIDEVFRTYGEFI-------DGEKGLTYDGLLRTYDDGAGDVDRD 89 (104)
Q Consensus 47 ~~~~~l~~~~~~~~~~~~-------~~~g~I~~~eF~~~~~~~~~~~~~~ 89 (104)
.++.+++..-.+.+..++ +..-.+++++|...|.+..+.+++.
T Consensus 5 ~e~~rl~rirrTv~eMl~DRGY~V~~~el~~s~~~F~~~~~~~~~~~~r~ 54 (93)
T PF03871_consen 5 EEVSRLFRIRRTVMEMLRDRGYLVSEEELNMSLEEFKEKYGENPGNPDRE 54 (93)
T ss_dssp HHHHHHHHHHCCCCCCCCCCTEE--CCCCS--HHHHHHHCB-SSSSB-GC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccChhhhcCCHHHHHHHHcccCCCCCHH
Confidence 556666665544444322 3345679999999998765555544
No 220
>PF08356 EF_assoc_2: EF hand associated; InterPro: IPR013567 This region predominantly appears near EF-hands (IPR002048 from INTERPRO) in GTP-binding proteins. It is found in all three eukaryotic kingdoms.
Probab=24.00 E-value=1.7e+02 Score=17.40 Aligned_cols=38 Identities=18% Similarity=0.245 Sum_probs=24.6
Q ss_pred CCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 42 VEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 42 ~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
.++..+++..+...+......- ...+.||.+-|+.+.+
T Consensus 2 ~pL~~~el~~ik~~v~~~~~~g-v~~~GiT~~GFl~L~~ 39 (89)
T PF08356_consen 2 KPLQPQELEDIKKVVRENIPDG-VNDNGITLDGFLFLNK 39 (89)
T ss_pred CCCCHHHHHHHHHHHHHHCCCC-cCCCccchhhHHHHHH
Confidence 3566777777666665543221 3457799999988655
No 221
>PF09808 SNAPc_SNAP43: Small nuclear RNA activating complex (SNAPc), subunit SNAP43; InterPro: IPR019188 Members of this family are part of the SNAPc complex required for the transcription of both RNA polymerase II and III small-nuclear RNA genes. They bind to the proximal sequence element (PSE), a non-TATA-box basal promoter element common to these 2 types of genes. Furthermore, they also recruit TBP and BRF2 to the U6 snRNA TATA box. SNAPc consists of at least four stably associated subunits, SNAP43, SNAP45, SNAP50, and SNAP190. None of the three small subunits can bind to the PSE on their own [].
Probab=23.78 E-value=1.4e+02 Score=19.98 Aligned_cols=26 Identities=12% Similarity=0.447 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 47 EQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 47 ~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
.++..++..+.. .+.++|++|..+|+
T Consensus 4 ~D~~~Ll~~F~~--------~~~~~F~~F~~~W~ 29 (194)
T PF09808_consen 4 EDIDELLQRFQQ--------AESVRFEDFKRLWR 29 (194)
T ss_pred HHHHHHHHHHHH--------cCCCCHHHHHHHHH
Confidence 355667777654 37788888888887
No 222
>smart00657 RPOL4c DNA-directed RNA-polymerase II subunit.
Probab=23.77 E-value=1.9e+02 Score=17.80 Aligned_cols=11 Identities=18% Similarity=0.250 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q 035984 47 EQINAIIDEVF 57 (104)
Q Consensus 47 ~~~~~l~~~~~ 57 (104)
+++..++..+.
T Consensus 86 ~E~~~lI~sl~ 96 (118)
T smart00657 86 EEAQLLIPSLE 96 (118)
T ss_pred HHHHHHhhhhh
Confidence 44444554443
No 223
>KOG4163 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.49 E-value=1.2e+02 Score=23.79 Aligned_cols=49 Identities=6% Similarity=0.123 Sum_probs=25.7
Q ss_pred cccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHhc
Q 035984 25 GLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYDD 81 (104)
Q Consensus 25 ~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~~ 81 (104)
.|+.+++..-+..+. ..+... |++......+. .-..-=+|+||+.++..
T Consensus 434 ~v~~~~l~~~v~elL--e~iq~~----m~~kA~~~rds--~~~~v~~~~eF~~aL~~ 482 (551)
T KOG4163|consen 434 DVSLGDLEKTVKELL--EKIQTN----LYEKAKEKRDS--HIVKVNTWEEFVKALDQ 482 (551)
T ss_pred ccCHHHHHHHHHHHH--HHHHHH----HHHHHHHHhhh--heeeeeeHHHHHHHhcc
Confidence 366777776666554 223233 34433332111 22233479999997763
No 224
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=23.07 E-value=1.5e+02 Score=16.33 Aligned_cols=46 Identities=17% Similarity=0.317 Sum_probs=33.4
Q ss_pred CCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 22 RDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 22 ~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
.+|.++.+|...+... ..+.+...++++.+.. .|.=.|..|+..++
T Consensus 24 ~~~vlt~~e~~~i~~~-----~~~~~k~~~Lld~l~~--------kg~~af~~F~~~L~ 69 (80)
T cd01671 24 SDGVLTEEEYEKIRSE-----STRQDKARKLLDILPR--------KGPKAFQSFLQALQ 69 (80)
T ss_pred HcCCCCHHHHHHHHcC-----CChHHHHHHHHHHHHh--------cChHHHHHHHHHHH
Confidence 5688999888876542 2366777888888865 45667788888776
No 225
>smart00708 PhBP Insect pheromone/odorant binding protein domains.
Probab=22.92 E-value=1.6e+02 Score=16.65 Aligned_cols=53 Identities=17% Similarity=0.359 Sum_probs=28.8
Q ss_pred ccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHhc
Q 035984 26 LNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYDD 81 (104)
Q Consensus 26 Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~~ 81 (104)
++.+++.......- ..++++.++..+.=+...++.+ +.+|.|..+.+...+..
T Consensus 11 ~~~~~~~~~~~~~~--~~~~~~~~kC~~~C~~~~~g~~-~~~g~~~~~~~~~~~~~ 63 (103)
T smart00708 11 VSEADLADFVKFWR--EDYPDEKVKCYIKCVLKKLGLV-DDDGKFDAEKLLEQLKA 63 (103)
T ss_pred cCHHHHHHHHHhcc--cCCcCcccCcHHHHHHHHcCCc-CCCCCcCHHHHHHHHHc
Confidence 56666666555322 1212444444444444444433 55688888888877763
No 226
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=22.63 E-value=1.7e+02 Score=16.96 Aligned_cols=30 Identities=23% Similarity=0.418 Sum_probs=21.2
Q ss_pred ccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 035984 26 LNREEMAALLVAVNPRVEFSDEQINAIIDEVF 57 (104)
Q Consensus 26 Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~ 57 (104)
|+.+++..+.+... ..++++++..+...+.
T Consensus 3 i~~e~i~~la~La~--l~l~~ee~~~~~~~l~ 32 (95)
T PRK00034 3 ITREEVKHLAKLAR--LELSEEELEKFAGQLN 32 (95)
T ss_pred CCHHHHHHHHHHhC--CCCCHHHHHHHHHHHH
Confidence 67788888777666 7888887766555443
No 227
>PF04433 SWIRM: SWIRM domain; InterPro: IPR007526 The SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in eukaryotic chromosomal proteins. It is named after the proteins SWI3, RSC8 and MOIRA in which it was first recognised. This domain is predicted to mediate protein-protein interactions in the assembly of chromatin-protein complexes. The SWIRM domain can be linked to different domains, such as the ZZ-type zinc finger (IPR000433 from INTERPRO), the Myb DNA-binding domain (IPR001005 from INTERPRO), the HORMA domain (IPR003511 from INTERPRO), the amino-oxidase domain, the chromo domain (IPR000953 from INTERPRO), and the JAB1/PAD1 domain.; GO: 0005515 protein binding; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2L3D_A ....
Probab=21.75 E-value=1.1e+02 Score=17.53 Aligned_cols=39 Identities=21% Similarity=0.298 Sum_probs=23.0
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 035984 14 IFQQFDTNRDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFR 58 (104)
Q Consensus 14 ~F~~~D~d~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~ 58 (104)
+...|-.+..++++..+....+. +.....+.++++-+..
T Consensus 42 il~~w~~n~~~~lt~~~~~~~i~------~~d~~~~~ri~~FL~~ 80 (86)
T PF04433_consen 42 ILAEWRKNPNKYLTKTDARKLIK------GIDVNKIRRIYDFLER 80 (86)
T ss_dssp HHHHHHHHTTS---HHHHHHHTT------SSSHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCcccHHHHHHHcc------ccCHHHHHHHHHHHHH
Confidence 34555567888888877765544 2456677777777655
No 228
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=21.41 E-value=1.1e+02 Score=20.85 Aligned_cols=24 Identities=38% Similarity=0.628 Sum_probs=18.6
Q ss_pred HHhhCCCCCCcccHHHHHHHHHHh
Q 035984 15 FQQFDTNRDGGLNREEMAALLVAV 38 (104)
Q Consensus 15 F~~~D~d~~G~Is~~el~~~l~~l 38 (104)
..-+|.|++|.++.+|+..+....
T Consensus 56 l~~~D~~~dg~~~~~el~~l~~~~ 79 (212)
T PF06226_consen 56 LEGLDKDGDGKLDPEELAALAKEI 79 (212)
T ss_pred HHhhhhcccCCCCHHHHHHHHHHH
Confidence 345788999999999888876643
No 229
>TIGR00987 himA integration host factor, alpha subunit. This protein forms a site-specific DNA-binding heterodimer with the integration host factor beta subunit. It is closely related to the DNA-binding protein HU.
Probab=21.29 E-value=1.1e+02 Score=17.94 Aligned_cols=47 Identities=15% Similarity=0.335 Sum_probs=25.9
Q ss_pred ccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHH
Q 035984 26 LNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGL 75 (104)
Q Consensus 26 Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF 75 (104)
++..||...+.... .++..+++.+++.+...+...-..++.|.+.+|
T Consensus 2 mtk~eli~~ia~~~---~~s~~~v~~vv~~~~~~i~~~L~~g~~V~l~gf 48 (96)
T TIGR00987 2 LTKAEMSEYLFDEL---GLSKREAKELVELFFEEIRRALENGEQVKLSGF 48 (96)
T ss_pred CCHHHHHHHHHHHh---CcCHHHHHHHHHHHHHHHHHHHHcCCeEEecCC
Confidence 46677777666533 467777766666554333100034556766665
No 230
>PF00619 CARD: Caspase recruitment domain; InterPro: IPR001315 The caspase recruitment domain domain (CARD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. CARD is related in sequence and structure to the death domain (DD, see IPR000488 from INTERPRO) and the death effector domain (DED, see IPR001875 from INTERPRO), which work in similar pathways and show similar interaction properties []. The CARD domain typically associates with other CARD-containing proteins, forming either dimers or trimers. CARD domains can be found in isolation, or in combination with other domains. Domains associated with CARD include: NACHT (IPR007111 from INTERPRO) (in Nal1 and Bir1), NB-ARC (IPR002182 from INTERPRO) (in Apaf-1), pyrin/dapin domains (IPR004020 from INTERPRO) (in Nal1), leucine-rich repeats () (in Nal1), WD repeats (IPR001680 from INTERPRO) (in Apaf1), Src homology domains (IPR001452 from INTERPRO), PDZ (IPR001478 from INTERPRO), RING, kinase and DD domains []. CARD-containing proteins are involved in apoptosis through their regulation of caspases that contain CARDs in their N-terminal pro-domains, including human caspases 1, 2, 9, 11 and 12 []. CARD-containing proteins are also involved in inflammation through their regulation of NF-kappaB []. The mechanisms by which CARDs activate caspases and NF-kappaB involve the assembly of multi-protein complexes, which can facilitate dimerisation or serve as scaffolds on which proteases and kinases are assembled and activated.; GO: 0005515 protein binding, 0042981 regulation of apoptosis, 0005622 intracellular; PDB: 2NSN_A 2NZ7_B 2DBD_A 4E9M_C 2B1W_A 3YGS_P 2KN6_A 3CRD_A 1DGN_A 3KAT_A ....
Probab=20.83 E-value=1.7e+02 Score=16.24 Aligned_cols=46 Identities=15% Similarity=0.228 Sum_probs=33.5
Q ss_pred CCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 22 RDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 22 ~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
.+|.|+.+|...+.. . ..+.+.+..+++.+.. .|.=.|..|+..+.
T Consensus 27 ~~~vlt~~e~e~I~~--~---~t~~~k~~~LLd~l~~--------kg~~a~~~F~~~L~ 72 (85)
T PF00619_consen 27 SRGVLTEEEYEEIRS--E---PTRQDKARKLLDILKR--------KGPEAFDIFCQALR 72 (85)
T ss_dssp HTTSSSHHHHHHHHT--S---SSHHHHHHHHHHHHHH--------CCHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHc--c---CChHHHHHHHHHHHHH--------HCHHHHHHHHHHHH
Confidence 477899888888755 2 3356678888888865 45666888888776
No 231
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=20.79 E-value=78 Score=19.25 Aligned_cols=18 Identities=22% Similarity=0.434 Sum_probs=15.2
Q ss_pred CCCcccHHHHHHHHHHhC
Q 035984 22 RDGGLNREEMAALLVAVN 39 (104)
Q Consensus 22 ~~G~Is~~el~~~l~~l~ 39 (104)
=.|+|+++|+..++..++
T Consensus 26 L~~~is~~ef~~iI~~IN 43 (118)
T PF10256_consen 26 LSGYISPEEFEEIINTIN 43 (118)
T ss_pred hcCCCCHHHHHHHHHHHH
Confidence 478899999999888876
No 232
>KOG3440 consensus Ubiquinol cytochrome c reductase, subunit QCR7 [Energy production and conversion]
Probab=20.77 E-value=1.4e+02 Score=18.89 Aligned_cols=66 Identities=15% Similarity=0.127 Sum_probs=44.1
Q ss_pred HHHHhhCCCCCCcccH--HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCccc-CCCCceeHHHHHHHHh
Q 035984 13 RIFQQFDTNRDGGLNR--EEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFI-DGEKGLTYDGLLRTYD 80 (104)
Q Consensus 13 ~~F~~~D~d~~G~Is~--~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~g~I~~~eF~~~~~ 80 (104)
..|+.|-.--+..+.. .++..+++.+- ..+.++...++..+++..+-..+ ..+...-+++++..++
T Consensus 27 ~g~rkyGL~~DDl~~e~n~dvkeAlrRLP--r~~~d~R~~Ri~RA~~Lsm~h~~LPk~ewtk~eed~~YL~ 95 (122)
T KOG3440|consen 27 SGFRKYGLRYDDLYYEENEDVKEALRRLP--RELYDARNYRIKRAMDLSMTHEILPKEEWTKYEEDVKYLE 95 (122)
T ss_pred hhhhhhCccccccccccCHHHHHHHHHCc--HHHHHHHHHHHHHHHHHhhhcccCCHHHhhcccchhhHHH
Confidence 3455555555555554 57888888876 56677777889998887654322 4556667777777665
No 233
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=20.77 E-value=3.5e+02 Score=21.08 Aligned_cols=47 Identities=19% Similarity=0.280 Sum_probs=35.9
Q ss_pred CCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 23 DGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 23 ~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
.-+|+.+++..+|.. . ...+.+.+..+++.+.. .+.|+.+|++.++.
T Consensus 10 ~~~i~~~~i~~~l~~-~--~~~~~~~v~~il~Kal~--------~~~Ls~eEal~LL~ 56 (469)
T PRK09613 10 ADFIDDEEIEELLEK-A--KNPDKDEIREILEKAKE--------KKGLSPEEAAVLLN 56 (469)
T ss_pred hhhcCHHHHHHHHHh-c--cCCCHHHHHHHHHHHHc--------CCCCCHHHHHHHHc
Confidence 357888889888886 2 35666778888887743 46799999999886
No 234
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=20.64 E-value=1.2e+02 Score=14.27 Aligned_cols=15 Identities=20% Similarity=0.116 Sum_probs=12.2
Q ss_pred cccHHHHHHHHHHhC
Q 035984 25 GLNREEMAALLVAVN 39 (104)
Q Consensus 25 ~Is~~el~~~l~~l~ 39 (104)
.++..+++..++..+
T Consensus 3 ~l~~~~Lk~~l~~~g 17 (35)
T smart00513 3 KLKVSELKDELKKRG 17 (35)
T ss_pred cCcHHHHHHHHHHcC
Confidence 467888999988877
No 235
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=20.58 E-value=1.7e+02 Score=16.07 Aligned_cols=35 Identities=26% Similarity=0.316 Sum_probs=29.4
Q ss_pred CCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 035984 22 RDGGLNREEMAALLVAVNPRVEFSDEQINAIIDEVFR 58 (104)
Q Consensus 22 ~~G~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~~ 58 (104)
.++-++...+...+..-+ ..+++..+...+.+++.
T Consensus 10 ~~~P~g~~~l~~~L~~~g--~~~se~avRrrLr~me~ 44 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRG--EELSEEAVRRRLRAMER 44 (66)
T ss_pred cCCCCCHHHHHHHHHhcC--hhhhHHHHHHHHHHHHH
Confidence 556788888988888766 88889999999999877
No 236
>PHA02105 hypothetical protein
Probab=20.46 E-value=1.7e+02 Score=16.12 Aligned_cols=52 Identities=10% Similarity=0.003 Sum_probs=28.5
Q ss_pred cccHHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 25 GLNREEMAALLVAVN-PRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 25 ~Is~~el~~~l~~l~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
+++.+|+.+++..-. ...++..+.++++-.-+.. .. -..--++|+||..++.
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsi--pq--i~yvyls~~e~~si~p 56 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSI--PQ--IKYVYLSYEEFNSIMP 56 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccc--cc--eEEEEEeHHHhccccc
Confidence 478889998877533 2223334443333322221 00 2345589999988765
No 237
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=20.37 E-value=2.2e+02 Score=17.48 Aligned_cols=31 Identities=19% Similarity=0.433 Sum_probs=26.7
Q ss_pred cccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 035984 25 GLNREEMAALLVAVNPRVEFSDEQINAIIDEVF 57 (104)
Q Consensus 25 ~Is~~el~~~l~~l~~~~~~~~~~~~~l~~~~~ 57 (104)
.||.+++..++...| ....+..+..++..+.
T Consensus 16 ~it~e~I~~IL~AAG--veVee~~~k~~v~aL~ 46 (106)
T PRK06402 16 EINEDNLKKVLEAAG--VEVDEARVKALVAALE 46 (106)
T ss_pred CCCHHHHHHHHHHcC--CCccHHHHHHHHHHHc
Confidence 799999999999988 8888888888887763
No 238
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=20.23 E-value=3.8e+02 Score=20.00 Aligned_cols=46 Identities=17% Similarity=0.260 Sum_probs=33.6
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHHh
Q 035984 30 EMAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTYD 80 (104)
Q Consensus 30 el~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~~ 80 (104)
-+...++.++ ..++++++..++..+..... .....|+-+|+..+++
T Consensus 324 ~v~~~l~~~g--~~~~~~~~~~~~~~vk~~~~---~~~~~~~~~el~~~~~ 369 (378)
T PRK11858 324 ALKNKLKEYG--IELSREELCELLEKVKELSE---RKKRSLTDEELKELVE 369 (378)
T ss_pred HHHHHHHHcC--CCCCHHHHHHHHHHHHHHHH---hcCCCCCHHHHHHHHH
Confidence 3555677777 88898888888887754322 2346899999999887
No 239
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=20.15 E-value=3.3e+02 Score=20.11 Aligned_cols=44 Identities=18% Similarity=0.261 Sum_probs=30.4
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCcccCCCCceeHHHHHHHH
Q 035984 31 MAALLVAVNPRVEFSDEQINAIIDEVFRTYGEFIDGEKGLTYDGLLRTY 79 (104)
Q Consensus 31 l~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~I~~~eF~~~~ 79 (104)
+...++.++ ..++++.+.++...+....+. ....|+.+|+..+|
T Consensus 322 i~~~l~~~g--~~~~~~~~~~~~~~vk~~~~~---~~~~~~~~el~~~~ 365 (365)
T TIGR02660 322 LINALAQLG--IPLSEEEAAALLPAVRAFATR---LKRPLSDAELIALY 365 (365)
T ss_pred HHHHHHHcC--CCCCHHHHHHHHHHHHHHHHh---cCCCCCHHHHHHhC
Confidence 455566777 888988888888877653332 23489988887754
Done!