BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035985
(293 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 493 bits (1270), Expect = e-140, Method: Compositional matrix adjust.
Identities = 228/293 (77%), Positives = 269/293 (91%)
Query: 1 NQKKISPLIALQELGELKIFRADLTDEASFDAPISRSDIVFHVATPVNFSSDDPETDMIK 60
NQKK+S L+ LQELG+LKIFRADLTDE SF+API+ D VFHVATPV+F+S+DPE DMIK
Sbjct: 45 NQKKVSHLLELQELGDLKIFRADLTDELSFEAPIAGCDFVFHVATPVHFASEDPENDMIK 104
Query: 61 PAIQGVVNVLKACTKTKTVKRVILTSSAAAVSINAQNVTGLVMDEKNWTDVEFLSSEKPP 120
PAIQGVVNV+KACT+ K+VKRVILTSSAAAV+IN + TGLV+DEKNWTD+EFL+S KPP
Sbjct: 105 PAIQGVVNVMKACTRAKSVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPP 164
Query: 121 TWGYAASKTLAERAACKFAQENNIDLITVIPSLMSGPSLTPDIPSSVALAATLITGNDFL 180
TWGY ASKTLAE+AA KFA+ENNIDLITVIP+LM+G SLT D+PSS+ LA +LITGN+FL
Sbjct: 165 TWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGSSLTSDVPSSIGLAMSLITGNEFL 224
Query: 181 LNGLKGMQMLSGSISISHVEDVCRAHIFLAEKESASGRYICCAVNTSVPELAKFLNKRFP 240
+NG+KGMQMLSGS+SI+HVEDVCRAHIF+AEKESASGRYICCA NTSVPELAKFL+KR+P
Sbjct: 225 INGMKGMQMLSGSVSIAHVEDVCRAHIFVAEKESASGRYICCAANTSVPELAKFLSKRYP 284
Query: 241 EYKVPTDFGDFPSEAKLILSSEKLISEGFCFKYGIEDIYDQTVEYLKTKGMLK 293
+YKVPTDFGDFP ++KLI+SSEKL+ EGF FKYGIE+IYD++VEY K KG+L+
Sbjct: 285 QYKVPTDFGDFPPKSKLIISSEKLVKEGFSFKYGIEEIYDESVEYFKAKGLLQ 337
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 240 bits (612), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 124/294 (42%), Positives = 185/294 (62%), Gaps = 11/294 (3%)
Query: 1 NQKKISPLIALQEL-GELKIFRADLTDEASFDAPISRSDIVFHVATPVNFSSDDPETDMI 59
N KK+ L+ L + L +++ADL DE SFD I VFHVATP++F S DPE ++I
Sbjct: 41 NVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTGVFHVATPMDFESKDPENEVI 100
Query: 60 KPAIQGVVNVLKACTKTKTVKRVILTSSAAAVSINAQNVTGLVMDEKNWTDVEFLSSEKP 119
KP I+G++ ++K+C KTV+R++ TSSA V+I + V DE W+D+EF ++K
Sbjct: 101 KPTIEGMLGIMKSCAAAKTVRRLVFTSSAGTVNIQEHQLP--VYDESCWSDMEFCRAKKM 158
Query: 120 PTWGYAASKTLAERAACKFAQENNIDLITVIPSLMSGPSLTPDIPSSVALAATLITGNDF 179
W Y SKTLAE+AA K+A+ENNID IT+IP+L+ GP + +P S+ A + ITGN+
Sbjct: 159 TAWMYFVSKTLAEQAAWKYAKENNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEA 218
Query: 180 LLNGLKGMQMLSGSISISHVEDVCRAHIFLAEKESASGRYICCAVNTSVPELAKFLNKRF 239
+ ++ Q + H++D+C AHI+L E A GRYIC + + + +LAK L +++
Sbjct: 219 HYSIIRQGQFV-------HLDDLCNAHIYLFENPKAEGRYICSSHDCIILDLAKMLREKY 271
Query: 240 PEYKVPTDFGDFPSEAK-LILSSEKLISEGFCFKYGIEDIYDQTVEYLKTKGML 292
PEY +PT+F K + SS+KL GF FKY +ED++ V+ + KG+L
Sbjct: 272 PEYNIPTEFKGVDENLKSVCFSSKKLTDLGFEFKYSLEDMFTGAVDTCRAKGLL 325
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 200 bits (508), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 106/279 (37%), Positives = 162/279 (58%), Gaps = 12/279 (4%)
Query: 16 ELKIFRADLTDEASFDAPISRSDIVFHVATPVNFSSDDPETDMIKPAIQGVVNVLKACTK 75
+L F ADL++ SF A I +FH A+P++F+ +PE + K + G + +LKAC
Sbjct: 54 KLHFFNADLSNPDSFAAAIEGCVGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVN 113
Query: 76 TKTVKRVILTSSAAAVSINAQNVTGLVMDEKNWTDVEFLSSEKPPTWGYAASKTLAERAA 135
+KTVKR I TSS +AVS N ++ V+DE +W+DV+ L S KP W YA SKTLAE+A
Sbjct: 114 SKTVKRFIYTSSGSAVSFNGKDKD--VLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAV 171
Query: 136 CKFAQENNIDLITVIPSLMSGPSLTPDIPSSVALAATLITGNDFLLNGLKGMQMLSGSIS 195
+F ++N ID++T+I + G + P +P S+ A L+ G K Q+
Sbjct: 172 LEFGEQNGIDVVTLILPFIVGRFVCPKLPDSIEKALVLVLG--------KKEQIGVTRFH 223
Query: 196 ISHVEDVCRAHIFLAEKESASGRYICCAVNTSVPELAKFLNKRFPEYKVPT--DFGDFPS 253
+ HV+DV RAHI+L E GRY C + E+++ L+ ++PEY++ T + +
Sbjct: 224 MVHVDDVARAHIYLLENSVPGGRYNCSPFIVPIEEMSQLLSAKYPEYQILTVDELKEIKG 283
Query: 254 EAKLILSSEKLISEGFCFKYGIEDIYDQTVEYLKTKGML 292
L+++KL+ GF FKY IED++D ++ K KG L
Sbjct: 284 ARLPDLNTKKLVDAGFDFKYTIEDMFDDAIQCCKEKGYL 322
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 83/153 (54%), Gaps = 13/153 (8%)
Query: 23 DLTDEASFDAPISRSDIVFHVATPVNFSSDDPETDMIKPAIQGVVNVLKACTKTKTVKRV 82
D+ + ++D I + V H+A+ V+FS+ E ++ PAI G +N L+A T +VKR
Sbjct: 70 DMLKQGAYDEVIKGAAGVAHIASVVSFSNKYDE--VVTPAIGGTLNALRAAAATPSVKRF 127
Query: 83 ILTSSAAAVSINAQNVTGLVMDEKNWTDVEFL--------SSEKPPTWGYAASKTLAERA 134
+LTSS + I NV G+ +DEK+W ++E + S + W YAASKT AE A
Sbjct: 128 VLTSSTVSALIPKPNVEGIYLDEKSW-NLESIDKAKTLPESDPQKSLWVYAASKTEAELA 186
Query: 135 ACKFAQEN--NIDLITVIPSLMSGPSLTPDIPS 165
A KF EN + L V+P+ G P+ S
Sbjct: 187 AWKFMDENKPHFTLNAVLPNYTIGTIFDPETQS 219
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 80.5 bits (197), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 78/149 (52%), Gaps = 11/149 (7%)
Query: 23 DLTDEASFDAPISRSDIVFHVATPVNFSSDDPETDMIKPAIQGVVNVLKACTKTKTVKRV 82
D + ++D I + V H+A+ V+FS+ E ++ PAI G +N L+A T +VKR
Sbjct: 70 DXLKQGAYDEVIKGAAGVAHIASVVSFSNKYDE--VVTPAIGGTLNALRAAAATPSVKRF 127
Query: 83 ILTSSAAAVSINAQNVTGLVMDEKNWT-----DVEFLSSEKPPT--WGYAASKTLAERAA 135
+LTSS + I NV G+ +DEK+W + L P W YAASKT AE AA
Sbjct: 128 VLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAA 187
Query: 136 CKFAQEN--NIDLITVIPSLMSGPSLTPD 162
KF EN + L V+P+ G P+
Sbjct: 188 WKFXDENKPHFTLNAVLPNYTIGTIFDPE 216
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 74/289 (25%), Positives = 112/289 (38%), Gaps = 45/289 (15%)
Query: 24 LTDEASFDAPISRSDIVFHVATPVNFSS--DDPETDMIKPAIQGVVNVLKACTKTKTVKR 81
+TD+A + D VFH+AT S DP D + LK + K KR
Sbjct: 87 ITDDALLASLQDEYDYVFHLATYHGNQSSIHDPLADH----ENNTLTTLKLYERLKHFKR 142
Query: 82 V-ILTSSAAAVSINAQNVTGLVMDEKNWTDVEFLSSEKPPTWGYAASKTLAERAACKFAQ 140
+ + SAA SI + E+ TD+ L + P Y+ SK E + + +
Sbjct: 143 LKKVVYSAAGCSIAEKTFDDAKATEE--TDIVSLHNNDSP---YSMSKIFGEFYSVYYHK 197
Query: 141 ENNIDLITVI------PSLMSGPSLTPDIPSSVALAATLITGNDFLLNGLKGM--QMLSG 192
++ + + P + G P++V T F+ LKGM + +G
Sbjct: 198 QHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPT----FIYKALKGMPLPLENG 253
Query: 193 SISISH---VEDVCRAHIFLAEKESASGRY-ICCAVNTSVPELAKFLNK---------RF 239
++ VEDV I A + G Y I TS+ +LA +N+ R
Sbjct: 254 GVATRDFIFVEDVANGLIACAADGTPGGVYNIASGKETSIADLATKINEITGNNTELDRL 313
Query: 240 PEYKVPTDFGDFPSEAKLILSSEKLISE-GFCFKYGIEDIYDQTVEYLK 287
P K P D + K S EK E GF I+D +T+E+ K
Sbjct: 314 P--KRPWD-----NSGKRFGSPEKARRELGFSADVSIDDGLRKTIEWTK 355
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
Length = 344
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Query: 16 ELKIFRADLTDEASFDAPISRSDIVFHVAT--PVNFSSDDPETDMIKPAIQGVVNVLKAC 73
++ F D+ D + + DI H A V + +P + IK I G NV+ AC
Sbjct: 71 RMRFFIGDVRDLERLNYALEGVDICIHAAALKHVPIAEYNP-LECIKTNIMGASNVINAC 129
Query: 74 TKTKTVKRVILTSSAAAVSINAQNVTGLVMDE 105
K + + L++ AA IN T L D+
Sbjct: 130 LKNAISQVIALSTDKAANPINLYGATKLCSDK 161
>pdb|1IQ0|A Chain A, Thermus Thermophilus Arginyl-Trna Synthetase
Length = 592
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 51 SDDPETDMIKPAIQGVVNVLKACTKTKTVKRVILTSSAAAVSINAQ 96
DPE + ++PAI+ V++ L+ + V R++L A ++NA+
Sbjct: 188 HQDPEYERLQPAIEEVLHALERGELREEVNRILLAQMATMHALNAR 233
>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase
(decarboxylase) Domain, S433a Mutant
Length = 358
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/117 (19%), Positives = 49/117 (41%), Gaps = 10/117 (8%)
Query: 43 VATPVNFSSDDPETDMIKPAIQGVVNVLKACTKTKTVKRVILTSSAAAVSINAQNVTGLV 102
+ATP+ ++ + + + + + +++ C K + KR+I S+A + +
Sbjct: 90 IATPIEYTRN--PLRVFELDFEENLRIIRYCVKYR--KRIIFPSTAEVYGMCSDKY---- 141
Query: 103 MDEKNWTDVEFLSSEKPPTWGYAASKTLAERAACKFAQENNIDLITVIPSLMSGPSL 159
DE + + + P W Y+ SK L +R + ++ + P GP L
Sbjct: 142 FDEDHSNLI--VGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRL 196
>pdb|3GS2|A Chain A, Ring1b C-Terminal DomainCBX7 CBOX COMPLEX
pdb|3GS2|C Chain C, Ring1b C-Terminal DomainCBX7 CBOX COMPLEX
pdb|3IXS|A Chain A, Ring1b C-Terminal DomainRYBP C-Terminal Domain Complex
pdb|3IXS|C Chain C, Ring1b C-Terminal DomainRYBP C-Terminal Domain Complex
pdb|3IXS|E Chain E, Ring1b C-Terminal DomainRYBP C-Terminal Domain Complex
pdb|3IXS|G Chain G, Ring1b C-Terminal DomainRYBP C-Terminal Domain Complex
pdb|3IXS|I Chain I, Ring1b C-Terminal DomainRYBP C-Terminal Domain Complex
pdb|3IXS|K Chain K, Ring1b C-Terminal DomainRYBP C-Terminal Domain Complex
Length = 111
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 197 SHVEDVCRAHIFLAEKE-SASGRYICCAVNTSVPELAKFLNKRF 239
S +E V R H L EK+ SA RYI + N +V L+K+L R
Sbjct: 2 SEIELVFRPHPTLMEKDDSAQTRYIKTSGNATVDHLSKYLAVRL 45
>pdb|3H8H|A Chain A, Structure Of The C-Terminal Domain Of Human Rnf2RING1B
Length = 112
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 197 SHVEDVCRAHIFLAEKE-SASGRYICCAVNTSVPELAKFLNKRF 239
S +E V R H L EK+ SA RYI + N +V L+K+L R
Sbjct: 6 SEIELVFRPHPTLMEKDDSAQTRYIKTSGNATVDHLSKYLAVRL 49
>pdb|1NI2|A Chain A, Structure Of The Active Ferm Domain Of Ezrin
pdb|1NI2|B Chain B, Structure Of The Active Ferm Domain Of Ezrin
Length = 296
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 14/100 (14%)
Query: 199 VEDVCRAHIFLAEKESASGRYICCAVNTSVPELAKFLNKRFPEYKVPTDFGDFPSEAKL- 257
++D+ + FL KE I C PE A L Y V FGD+ E
Sbjct: 93 IQDITQKLFFLQVKEGILSDEIYCP-----PETAVLLG----SYAVQAKFGDYNKEVHKS 143
Query: 258 -ILSSEKLISEGFCFKYGI-EDIYDQTVE--YLKTKGMLK 293
LSSE+LI + ++ + D ++ ++ + + +GMLK
Sbjct: 144 GYLSSERLIPQRVMDQHKLTRDQWEDRIQVWHAEHRGMLK 183
>pdb|3A1N|A Chain A, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A1N|B Chain B, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A4V|A Chain A, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A4V|B Chain B, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
Length = 317
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 60/303 (19%), Positives = 120/303 (39%), Gaps = 41/303 (13%)
Query: 5 ISPLIALQELGELKIFRADLTDEASFDAPISRS--DIVFHVATPVNFSSDDPETDMIKPA 62
I+ I ++ G +K D+++ D + + D +FH+A ++ + K
Sbjct: 29 IASDIVQRDTGGIKFITLDVSNRDEIDRAVEKYSIDAIFHLAGILSAKGEKDPALAYKVN 88
Query: 63 IQGVVNVLKACTKTKTVKRVILTSSAAAVSINAQNVTGLVMDEKNWTDVEFLSSEKPPTW 122
+ G N+L+A K V++V++ S+ G+ E V ++ +P T
Sbjct: 89 MNGTYNILEAA-KQHRVEKVVIPST-----------IGVFGPETPKNKVPSITITRPRTM 136
Query: 123 GYAASKTLAERAACKFAQENNIDLITV----IPSLMSGPSL-TPDIPSSVALAATLITGN 177
Y +K AE + ++ +D+ ++ I S + P+ T D + A
Sbjct: 137 -YGVTKIAAELLGQYYYEKFGLDVRSLRYPGIISYKAEPTAGTTDYAVEIFYYAVKREKY 195
Query: 178 DFLLNGLKGMQMLSGSISISHVEDVCRAHIFLAEKES----ASGRYICCAVNTSVPELAK 233
L + + M+ ++ D +A + L E + Y A + EL
Sbjct: 196 KCYLAPNRALPMM-------YMPDALKALVDLYEADRDKLVLRNGYNVTAYTFTPSELYS 248
Query: 234 FLNKRFPEYKV--PTDFGD-----FPSEAKLILSSEKLISEGFCFKYGIEDIYDQTVEYL 286
+ +R PE+++ DF D +P + SSE GF +Y ++ D ++++
Sbjct: 249 KIKERIPEFEIEYKEDFRDKIAATWPES---LDSSEASNEWGFSIEYDLDRTIDDMIDHI 305
Query: 287 KTK 289
K
Sbjct: 306 SEK 308
>pdb|1ZWV|A Chain A, Solution Structure Of The Subunit Binding Domain (Hbsbd)
Of The Human Mitochondrial Branched-Chain Alpha-Ketoacid
Dehydrogenase
Length = 58
Score = 27.7 bits (60), Expect = 7.4, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 19/36 (52%)
Query: 128 KTLAERAACKFAQENNIDLITVIPSLMSGPSLTPDI 163
KTLA A + A ENNI L V+ S G L DI
Sbjct: 7 KTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDI 42
>pdb|3A9W|A Chain A, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A9W|B Chain B, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3AJR|A Chain A, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
pdb|3AJR|B Chain B, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
Length = 317
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 5 ISPLIALQELGELKIFRADLTDEASFDAPISRS--DIVFHVATPVNFSSDDPETDMIKPA 62
I+ I ++ G +K D+++ D + + D +FH+A ++ + K
Sbjct: 29 IASDIVQRDTGGIKFITLDVSNRDEIDRAVEKYSIDAIFHLAGILSAKGEKDPALAYKVN 88
Query: 63 IQGVVNVLKACTKTKTVKRVILTSS 87
+ G N+L+A K V++V++ S+
Sbjct: 89 MNGTYNILEAA-KQHRVEKVVIPST 112
>pdb|2COO|A Chain A, Solution Structure Of The E3_binding Domain Of
Dihydrolipoamide Branched Chaintransacylase
Length = 70
Score = 27.3 bits (59), Expect = 9.7, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 19/36 (52%)
Query: 128 KTLAERAACKFAQENNIDLITVIPSLMSGPSLTPDI 163
KTLA A + A ENNI L V+ S G L DI
Sbjct: 15 KTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDI 50
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,071,931
Number of Sequences: 62578
Number of extensions: 313399
Number of successful extensions: 1112
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1093
Number of HSP's gapped (non-prelim): 17
length of query: 293
length of database: 14,973,337
effective HSP length: 98
effective length of query: 195
effective length of database: 8,840,693
effective search space: 1723935135
effective search space used: 1723935135
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)