Your job contains 1 sequence.
>035988
METEEILQELENVEAEVRLVQEQIKQLVDRQDQLYERQSELKSLLEAFEASRGSPIQYGG
SSSTAVENWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKS
LCYQLPAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKG
EGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGI
LKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVV
IDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMR
WSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFR
PADVPRQSSMVFYENSGLQNLYDIVRYSQYPLHWNIEKVRLVIFEKLQQVNLFCMVVLAG
HAQCIISLLQDIQDNNQRLTMLQLVDKMKIKLKEIDSDLKREEIEQLVLQLIIDRVLVRI
GPFSPGKKIIKLEISSVQKNTADNKKSTKRSLTSSALEFELDELRKELASISGGILPHSV
LSSQLIRLISARKPSTMEEASSNHLEKIIGKLKTGKYGSRILEVISKCGNSEQQHDNNAV
SKEEQGRDARASKRTKKEKAVVVVDSSDDSEV
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 035988
(692 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2197555 - symbol:RECQL2 "RECQ helicase L2" spe... 2019 8.3e-209 1
UNIPROTKB|F1NPI7 - symbol:RECQL "Uncharacterized protein"... 1194 3.8e-127 2
RGD|1311071 - symbol:Recql "RecQ protein-like (DNA helica... 1157 4.5e-124 2
UNIPROTKB|Q6AYJ1 - symbol:Recql "ATP-dependent DNA helica... 1157 4.5e-124 2
UNIPROTKB|F1PNP1 - symbol:RECQL "Uncharacterized protein"... 1160 5.7e-124 2
UNIPROTKB|F1SR01 - symbol:RECQL "Uncharacterized protein"... 1133 1.9e-122 3
UNIPROTKB|P46063 - symbol:RECQL "ATP-dependent DNA helica... 1143 5.1e-121 2
MGI|MGI:103021 - symbol:Recql "RecQ protein-like" species... 1142 1.1e-120 2
UNIPROTKB|A0JN36 - symbol:RECQL "Uncharacterized protein"... 1138 1.4e-120 2
ZFIN|ZDB-GENE-050809-134 - symbol:recql "RecQ protein-lik... 1082 1.6e-109 1
WB|WBGene00019334 - symbol:K02F3.12 species:6239 "Caenorh... 1050 1.7e-109 2
DICTYBASE|DDB_G0292130 - symbol:blm "Bloom syndrome prote... 958 4.6e-101 2
TAIR|locus:2197394 - symbol:RECQ4A species:3702 "Arabidop... 919 2.0e-98 2
FB|FBgn0002906 - symbol:Blm "Bloom syndrome helicase orth... 889 8.2e-97 4
UNIPROTKB|Q9DEY9 - symbol:blm "Bloom syndrome protein hom... 847 5.6e-93 4
UNIPROTKB|E1BQ04 - symbol:BLM "Uncharacterized protein" s... 868 2.5e-90 3
MGI|MGI:1328362 - symbol:Blm "Bloom syndrome, RecQ helica... 849 1.8e-89 4
ASPGD|ASPL0000045206 - symbol:musN species:162425 "Emeric... 865 3.5e-89 3
UNIPROTKB|P54132 - symbol:BLM "Bloom syndrome protein" sp... 856 8.8e-89 3
UNIPROTKB|H0YNU5 - symbol:BLM "Bloom syndrome protein" sp... 856 1.9e-88 3
UNIPROTKB|E2RS76 - symbol:BLM "Uncharacterized protein" s... 857 2.0e-88 3
UNIPROTKB|J9PB86 - symbol:BLM "Uncharacterized protein" s... 857 2.4e-88 3
UNIPROTKB|F1ND40 - symbol:BLM "Bloom syndrome protein hom... 829 2.9e-88 3
UNIPROTKB|Q9I920 - symbol:BLM "Bloom syndrome protein hom... 825 1.6e-87 3
ZFIN|ZDB-GENE-070702-5 - symbol:blm "Bloom syndrome" spec... 832 1.1e-85 2
UNIPROTKB|F1P3V1 - symbol:BLM "Bloom syndrome protein hom... 829 1.2e-85 3
RGD|1308810 - symbol:Blm "Bloom syndrome, RecQ helicase-l... 838 1.5e-85 2
WB|WBGene00001865 - symbol:him-6 species:6239 "Caenorhabd... 811 1.5e-85 2
POMBASE|SPAC2G11.12 - symbol:rqh1 "RecQ type DNA helicase... 801 3.8e-82 2
CGD|CAL0004296 - symbol:SGS1 species:5476 "Candida albica... 805 6.9e-82 2
UNIPROTKB|Q5A5R4 - symbol:SGS1 "Putative uncharacterized ... 805 6.9e-82 2
TIGR_CMR|GSU_0898 - symbol:GSU_0898 "ATP-dependent DNA he... 766 7.4e-82 2
UNIPROTKB|Q9KVF0 - symbol:VC_0196 "ATP-dependent DNA heli... 815 3.2e-81 1
TIGR_CMR|VC_0196 - symbol:VC_0196 "ATP-dependent DNA heli... 815 3.2e-81 1
SGD|S000004802 - symbol:SGS1 "Nucleolar DNA helicase of t... 801 7.4e-81 2
UNIPROTKB|P15043 - symbol:recQ species:83333 "Escherichia... 811 8.5e-81 1
DICTYBASE|DDB_G0272384 - symbol:DDB_G0272384 "Bloom syndr... 807 2.2e-80 1
TIGR_CMR|SO_4241 - symbol:SO_4241 "ATP-dependent DNA heli... 769 2.5e-79 2
TIGR_CMR|CBU_0472 - symbol:CBU_0472 "ATP-dependent DNA he... 760 2.5e-79 2
TAIR|locus:2127998 - symbol:RecQl3 "AT4G35740" species:37... 779 2.1e-77 1
TAIR|locus:2074429 - symbol:RECQI1 "RECQ helicase l1" spe... 770 1.9e-76 1
UNIPROTKB|O34748 - symbol:recQ "Probable ATP-dependent DN... 688 3.2e-75 2
RGD|1310823 - symbol:Recql5 "RecQ protein-like 5" species... 749 3.1e-74 1
UNIPROTKB|F1NT69 - symbol:F1NT69 "Uncharacterized protein... 716 1.2e-73 2
TIGR_CMR|SPO_0107 - symbol:SPO_0107 "ATP-dependent DNA he... 708 1.2e-73 2
UNIPROTKB|F1NWK5 - symbol:F1NWK5 "Uncharacterized protein... 716 1.4e-73 2
UNIPROTKB|F1PAG8 - symbol:RECQL5 "Uncharacterized protein... 720 2.5e-73 2
TIGR_CMR|BA_2818 - symbol:BA_2818 "ATP-dependent DNA heli... 655 1.8e-72 2
UNIPROTKB|E1BKM5 - symbol:RECQL5 "Uncharacterized protein... 727 6.7e-72 1
UNIPROTKB|J3KTQ2 - symbol:RECQL5 "ATP-dependent DNA helic... 719 4.8e-71 1
UNIPROTKB|O94762 - symbol:RECQL5 "ATP-dependent DNA helic... 719 4.8e-71 1
UNIPROTKB|I3LFW3 - symbol:RECQL5 "Uncharacterized protein... 715 1.3e-70 1
UNIPROTKB|F1RX70 - symbol:WRN "Uncharacterized protein" s... 651 3.4e-69 4
UNIPROTKB|I3LC91 - symbol:WRN "Uncharacterized protein" s... 651 6.6e-69 4
UNIPROTKB|E1BEE6 - symbol:WRN "Uncharacterized protein" s... 657 4.3e-68 4
UNIPROTKB|F1PZR3 - symbol:WRN "Uncharacterized protein" s... 666 1.9e-67 2
UNIPROTKB|F1PZR2 - symbol:WRN "Uncharacterized protein" s... 668 4.2e-67 2
WB|WBGene00004322 - symbol:rcq-5 species:6239 "Caenorhabd... 663 4.2e-67 2
FB|FBgn0027375 - symbol:RecQ5 "homolog of RecQ" species:7... 632 3.2e-66 3
UNIPROTKB|F1PUF8 - symbol:WRN "Uncharacterized protein" s... 668 7.0e-66 2
UNIPROTKB|O93530 - symbol:wrn "Werner syndrome ATP-depend... 652 6.1e-64 2
UNIPROTKB|Q14191 - symbol:WRN "Werner syndrome ATP-depend... 655 7.5e-64 2
UNIPROTKB|F1NAR0 - symbol:F1NAR0 "Uncharacterized protein... 646 2.6e-63 2
DICTYBASE|DDB_G0268512 - symbol:wrn "Werner syndrome prot... 637 7.2e-63 2
MGI|MGI:109635 - symbol:Wrn "Werner syndrome homolog (hum... 647 3.2e-62 1
GENEDB_PFALCIPARUM|PF14_0278 - symbol:PF14_0278 "ATP-depe... 620 1.0e-60 2
UNIPROTKB|Q8ILG5 - symbol:PF14_0278 "ATP-dependent DNA he... 620 1.0e-60 2
RGD|1564788 - symbol:Wrn "Werner syndrome, RecQ helicase-... 614 1.4e-60 2
WB|WBGene00006944 - symbol:wrn-1 species:6239 "Caenorhabd... 627 1.6e-60 1
UNIPROTKB|Q6P4G0 - symbol:RECQL5 "ATP-dependent DNA helic... 611 5.4e-59 1
ZFIN|ZDB-GENE-070702-2 - symbol:wrn "Werner syndrome" spe... 477 8.9e-59 2
TIGR_CMR|BA_1505 - symbol:BA_1505 "ATP-dependent DNA heli... 584 9.6e-57 1
ASPGD|ASPL0000072255 - symbol:recQ species:162425 "Emeric... 412 2.7e-56 3
UNIPROTKB|Q47WD5 - symbol:CPS_4237 "RecQ domain protein" ... 574 1.1e-55 1
TIGR_CMR|CPS_4237 - symbol:CPS_4237 "RecQ domain protein"... 574 1.1e-55 1
TAIR|locus:2180255 - symbol:RECQSIM "RECQ helicase SIM" s... 408 2.5e-55 2
UNIPROTKB|Q8EEK1 - symbol:SO_2380 "ATP-dependent DNA heli... 555 1.1e-53 1
TIGR_CMR|SO_2380 - symbol:SO_2380 "RecQ domain protein" s... 555 1.1e-53 1
TAIR|locus:2029799 - symbol:AT1G27880 species:3702 "Arabi... 513 2.1e-48 1
UNIPROTKB|F1RMJ3 - symbol:BLM "Uncharacterized protein" s... 492 5.4e-47 1
FB|FBgn0040290 - symbol:RecQ4 "RecQ4" species:7227 "Droso... 304 1.4e-42 2
MGI|MGI:1931028 - symbol:Recql4 "RecQ protein-like 4" spe... 454 6.8e-40 1
UNIPROTKB|F1RSP7 - symbol:RECQL4 "Uncharacterized protein... 452 1.1e-39 1
UNIPROTKB|K7GSZ9 - symbol:RECQL4 "Uncharacterized protein... 452 1.2e-39 1
UNIPROTKB|F1RV44 - symbol:RECQL4 "Uncharacterized protein... 452 1.2e-39 1
RGD|1307732 - symbol:Recql4 "RecQ protein-like 4" species... 455 2.4e-39 2
UNIPROTKB|O94761 - symbol:RECQL4 "ATP-dependent DNA helic... 448 3.3e-39 1
UNIPROTKB|F8WD97 - symbol:RECQL "ATP-dependent DNA helica... 423 3.6e-39 1
UNIPROTKB|A5D786 - symbol:RECQL4 "RECQL4 protein" species... 431 2.9e-37 1
UNIPROTKB|Q33DM4 - symbol:recql4 "RecQ4 protein" species:... 276 5.4e-36 2
UNIPROTKB|Q4JNX8 - symbol:RTS "RECQL4-helicase-like prote... 270 2.5e-35 2
UNIPROTKB|F8WA66 - symbol:RECQL "ATP-dependent DNA helica... 387 3.4e-35 1
UNIPROTKB|H9KZS5 - symbol:H9KZS5 "Uncharacterized protein... 201 8.0e-26 3
UNIPROTKB|F1RMJ2 - symbol:BLM "Uncharacterized protein" s... 292 1.9e-23 3
UNIPROTKB|J3KSL7 - symbol:RECQL5 "ATP-dependent DNA helic... 271 1.3e-22 1
UNIPROTKB|E2RDN3 - symbol:E2RDN3 "Uncharacterized protein... 276 3.0e-20 1
ASPGD|ASPL0000073665 - symbol:AN5092 species:162425 "Emer... 262 1.5e-18 1
UNIPROTKB|F5H2L2 - symbol:RECQL "ATP-dependent DNA helica... 214 1.8e-16 1
POMBASE|SPBCPT2R1.08c - symbol:tlh2 "RecQ type DNA helica... 242 2.9e-15 3
POMBASE|SPAC212.11 - symbol:tlh1 "RecQ type DNA helicase"... 242 4.0e-15 3
WARNING: Descriptions of 391 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2197555 [details] [associations]
symbol:RECQL2 "RECQ helicase L2" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016592 "mediator complex" evidence=IDA] [GO:0006281 "DNA
repair" evidence=IC] [GO:0006310 "DNA recombination" evidence=IC]
[GO:0009378 "four-way junction helicase activity" evidence=IDA]
[GO:0043138 "3'-5' DNA helicase activity" evidence=IDA] [GO:0000278
"mitotic cell cycle" evidence=RCA] [GO:0006396 "RNA processing"
evidence=RCA] [GO:0010413 "glucuronoxylan metabolic process"
evidence=RCA] [GO:0045492 "xylan biosynthetic process"
evidence=RCA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00490 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
GO:GO:0006310 EMBL:AC007654 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 eggNOG:COG0514 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0009378 GO:GO:0016592 GO:GO:0043138
EMBL:AJ404471 IPI:IPI00518751 IPI:IPI00846160 RefSeq:NP_001077639.1
RefSeq:NP_174421.2 UniGene:At.40359 HSSP:P15043
ProteinModelPortal:Q9FT73 SMR:Q9FT73 IntAct:Q9FT73 STRING:Q9FT73
PaxDb:Q9FT73 PRIDE:Q9FT73 EnsemblPlants:AT1G31360.1 GeneID:840026
KEGG:ath:AT1G31360 TAIR:At1g31360 InParanoid:Q9FT73 KO:K10899
OMA:ESSQTCH PhylomeDB:Q9FT73 ProtClustDB:CLSN2680338
Genevestigator:Q9FT73 Uniprot:Q9FT73
Length = 705
Score = 2019 (715.8 bits), Expect = 8.3e-209, P = 8.3e-209
Identities = 400/584 (68%), Positives = 475/584 (81%)
Query: 1 METEEILQELENVEAEVRLVQEQIKQLVDRQDQLYERQSELKSLLEAFEASRGSPIQYGG 60
ME+E I ++L+N++ E++ VQ QI L++ QD+LYER+SELK+LL+A AS GSP+ G
Sbjct: 1 MESEAIQEDLQNLDVELKDVQGQISALIEHQDRLYERKSELKTLLKALAAS-GSPVASSG 59
Query: 61 SSSTAVENWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKS 120
SS A+ENWS TFEWDSRADDVR NVFGI YRANQ+EIINA+++GRDVLVIMAAGGGKS
Sbjct: 60 GSS-AIENWSETFEWDSRADDVRFNVFGISKYRANQKEIINAIMTGRDVLVIMAAGGGKS 118
Query: 121 LCYQLPAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKG 180
LCYQLPA+LR G LVVSPLLSLIQDQVM LAALGI A+MLTST+ KE+EKF+YKALEKG
Sbjct: 119 LCYQLPAMLRGGTTLVVSPLLSLIQDQVMGLAALGISAYMLTSTSGKENEKFVYKALEKG 178
Query: 181 EGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGI 240
E +LK+LYVTPEK+SKSKRFMSKLEKCH+AGRLSLISIDEAHCCSQWGHDFRPDYKNL I
Sbjct: 179 EDDLKILYVTPEKVSKSKRFMSKLEKCHNAGRLSLISIDEAHCCSQWGHDFRPDYKNLSI 238
Query: 241 LKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVV 300
LKTQFP VPM+ALTATATQKVQNDL+EMLHI KC+KFVS++NRPNLFY VREKS+VGK+V
Sbjct: 239 LKTQFPKVPMVALTATATQKVQNDLIEMLHIPKCVKFVSSVNRPNLFYSVREKSAVGKLV 298
Query: 301 IDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMR 360
+DEIA++I+ESY N+ESGIVYCFSRKECEQ+A +LR+RGISADYYHADMD N REKVHMR
Sbjct: 299 VDEIAEFIRESYSNNESGIVYCFSRKECEQIAGDLRERGISADYYHADMDANMREKVHMR 358
Query: 361 WSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFR 420
WSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKS+ETYYQESGRAGRDGLPSEC+LFFR
Sbjct: 359 WSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECILFFR 418
Query: 421 PADVPRQSSMVFYENSGLQNLYDIVRYSQYPLHWNIEKVRLVIFEKLQQVNLFC------ 474
ADVPRQSSMVFYE SGLQNLYDIVRY Q E Q N C
Sbjct: 419 SADVPRQSSMVFYEYSGLQNLYDIVRYCQSKTKCRRSAFFRHFGEPSQDCNGMCDNCALS 478
Query: 475 ----MVVLAGHAQCIISLLQDIQDNNQRLTMLQLVDKMKIKLKEIDSDLKREEIEQLVLQ 530
V ++ ++ ++S++Q+ Q +QR+TMLQL DK++ K K++ ++LKR+E+E LV++
Sbjct: 479 SEVKEVDVSDLSKLVVSMVQETQAKDQRVTMLQLGDKLRNKHKDLIAELKRDEVEHLVIK 538
Query: 531 LIIDRVLVRIGPFSPGKKIIKLEISSVQKNTADNKKSTKRSLTS 574
LI+D VL +P + + + +K+ K +S
Sbjct: 539 LIVDSVLKEEFQHTPYSTNAYVTMGPLANQLLQGRKTIKMETSS 582
Score = 351 (128.6 bits), Expect = 6.7e-29, P = 6.7e-29
Identities = 94/217 (43%), Positives = 138/217 (63%)
Query: 482 AQCIISLLQDIQDNNQRLTMLQLVDKMKIKLKEIDSDLKREEIEQLVLQLIIDRVL---- 537
++ ++S++Q+ Q +QR+TMLQL DK++ K K++ ++LKR+E+E LV++LI+D VL
Sbjct: 490 SKLVVSMVQETQAKDQRVTMLQLGDKLRNKHKDLIAELKRDEVEHLVIKLIVDSVLKEEF 549
Query: 538 ----------VRIGPFS----PGKKIIKLEISSVQKNTADNKKSTKRSLTSSALEFELDE 583
V +GP + G+K IK+E SS Q K KRS+T S LE +LDE
Sbjct: 550 QHTPYSTNAYVTMGPLANQLLQGRKTIKMETSSRQT------KKLKRSITFSGLELKLDE 603
Query: 584 LRKELASISGGILPHSVLSSQLIRLISARKPSTMEEASSNHLEKIIGKLKTGKYGSRILE 643
LRKE+++ G ILPH+VLS+Q I IS++KP +++E LE IIGKLKT KYG RILE
Sbjct: 604 LRKEISAADGSILPHTVLSTQQIGSISSQKPVSLQE-----LESIIGKLKTEKYGDRILE 658
Query: 644 VISKC-GNSEQQHDNNAVSKEEQGRDARASKRTKKEK 679
+ + SEQ ++ +KEE + +R KR K +K
Sbjct: 659 EVMRHEAVSEQLVEDP--TKEETCK-SRLRKRAKTQK 692
>UNIPROTKB|F1NPI7 [details] [associations]
symbol:RECQL "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000733 "DNA strand renaturation"
evidence=IEA] [GO:0003678 "DNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0015630 "microtubule
cytoskeleton" evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0015630
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0000733
GO:GO:0008026 OMA:ESSQTCH EMBL:AADN02006609 IPI:IPI00602593
Ensembl:ENSGALT00000021517 Uniprot:F1NPI7
Length = 661
Score = 1194 (425.4 bits), Expect = 3.8e-127, Sum P(2) = 3.8e-127
Identities = 254/562 (45%), Positives = 369/562 (65%)
Query: 1 METEEILQE-LENVEAEVRLVQEQIKQLVDRQDQLYERQSELKSLLEAFEASRGSPIQYG 59
M E+L+E L ++E E++ V+ QI++L+D+Q +L ++++ LK L++ S G G
Sbjct: 1 MTAVEVLEEELLSIENELQAVEMQIQELLDKQQELIQKKTTLKKLIKQ---SSGESAA-G 56
Query: 60 GS--SSTAVENWSGT-FEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAG 116
GS + T+VE W+ T F W + N F +P +R+ Q E +NA ++G+D+ ++M G
Sbjct: 57 GSKETETSVEAWNRTDFPWYEKIKTALQNKFKLPKFRSLQLETVNATMAGKDIFLVMPTG 116
Query: 117 GGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKA 176
GGKSLCYQLPAV +G LV+ PL+SL++DQ+M L LGI A +L +++SKE K+++
Sbjct: 117 GGKSLCYQLPAVCSDGFTLVICPLISLMEDQLMVLDQLGISATLLNASSSKEHVKWVHAQ 176
Query: 177 LEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYK 236
+ +LK+LYVTPEKI+KSK FMSKLEK + AG L+ I++DE HCCSQWGHDFRPDYK
Sbjct: 177 MLDRNSQLKLLYVTPEKIAKSKMFMSKLEKAYQAGCLARIAVDEVHCCSQWGHDFRPDYK 236
Query: 237 NLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSV 296
+LGILK QFP P++ LTATAT V D +LHI+KCI F ++ NRPNL+Y VR K S
Sbjct: 237 SLGILKRQFPCAPLIGLTATATNHVLKDAQNILHIQKCITFTASFNRPNLYYEVRHKPSN 296
Query: 297 GKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREK 356
+ I++I K I Y SGIVYCFS+K+ EQV L++ GI A YHA+MD + K
Sbjct: 297 NEDFIEDIVKLINGRYKGL-SGIVYCFSQKDSEQVTVSLQKLGIKAGTYHANMDAKYKTK 355
Query: 357 VHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECL 416
VH W+ N++QV+V TVAFGMGI+KPDVRFVIHHS+SKS+E YYQESGRAGRD ++C+
Sbjct: 356 VHKGWAANQIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDQKADCI 415
Query: 417 LFFRPADVPRQSSMVFYENSGLQNLYDIVRYSQYPLHWNIEKVRLVI----FEKLQQ--- 469
L++ D+ R SSMV EN G + LYD+V Y Q N+ K R V+ F+++ +
Sbjct: 416 LYYGFGDIFRISSMVVMENVGQEKLYDMVSYCQ-----NMNKCRRVLIARHFDEVWESAN 470
Query: 470 VNLFC----------MVVLAGHAQCIISLLQDIQDNNQRLTMLQLVDKMKIK-LKEID-S 517
N C + G+ + +I +L+ + +++LT L+L+D K L ++ +
Sbjct: 471 CNRMCDNCCRENSLEKKDITGYYRDLIKILEQADNMSEKLTPLKLIDAWSGKGLSKLRVA 530
Query: 518 DLKREEIEQLVLQLIIDRVLVR 539
++ ++ + L+ II +L++
Sbjct: 531 EVTPPKLPREELERIIAHLLLQ 552
Score = 75 (31.5 bits), Expect = 3.8e-127, Sum P(2) = 3.8e-127
Identities = 30/121 (24%), Positives = 60/121 (49%)
Query: 478 LAGHAQCIISLLQDIQDNNQRLTMLQLVDKM------KIKLKEIDSD-LKREEIEQLVLQ 530
+ G+ + +I +L+ + +++LT L+L+D K+++ E+ L REE+E+++
Sbjct: 489 ITGYYRDLIKILEQADNMSEKLTPLKLIDAWSGKGLSKLRVAEVTPPKLPREELERIIAH 548
Query: 531 LIIDRVLVRIGPFSPGKKIIKLEI---SSVQKNTAD--------NKKSTKRSLTSSALEF 579
L++ + L F+ I L+I + + +N A NKKS R+ S +
Sbjct: 549 LLLQQYLREDFSFTAFATISYLKIGPKAGLLRNEAHIITIQGTTNKKSIHRNKPSESSNS 608
Query: 580 E 580
E
Sbjct: 609 E 609
>RGD|1311071 [details] [associations]
symbol:Recql "RecQ protein-like (DNA helicase Q1-like)"
species:10116 "Rattus norvegicus" [GO:0000733 "DNA strand
renaturation" evidence=IEA;ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0015630 "microtubule cytoskeleton"
evidence=IEA;ISO] [GO:0032508 "DNA duplex unwinding" evidence=ISO]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF09382
PROSITE:PS51194 SMART:SM00490 RGD:1311071 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
KO:K10899 HOGENOM:HOG000044388 CTD:5965 HOVERGEN:HBG057654
EMBL:BC079026 IPI:IPI00366306 RefSeq:NP_001012098.1
UniGene:Rn.203166 ProteinModelPortal:Q6AYJ1 SMR:Q6AYJ1
STRING:Q6AYJ1 PRIDE:Q6AYJ1 Ensembl:ENSRNOT00000065576 GeneID:312824
KEGG:rno:312824 UCSC:RGD:1311071 NextBio:665291 ArrayExpress:Q6AYJ1
Genevestigator:Q6AYJ1 GermOnline:ENSRNOG00000012602 Uniprot:Q6AYJ1
Length = 621
Score = 1157 (412.3 bits), Expect = 4.5e-124, Sum P(2) = 4.5e-124
Identities = 238/519 (45%), Positives = 334/519 (64%)
Query: 6 ILQELENVEAEVRLVQEQIKQLVDRQDQLYERQSELKSLLEAFEASRGSPIQYGGSSSTA 65
+ ELE+V +E+ V QI++L +RQ +L +R+S L ++ + S + G T+
Sbjct: 7 LTDELESVSSELHAVDIQIQELTERQHELLQRKSVLTKRIK--QCLEDSAAEASGDCDTS 64
Query: 66 VENWSGT-FEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQ 124
WS F W + V +VF + +R Q E +NA ++ +D+ ++M GGGKSLCYQ
Sbjct: 65 PAAWSKEDFPWSGKVKHVLRDVFKLQKFRPLQLETVNATMARKDIFLVMPTGGGKSLCYQ 124
Query: 125 LPAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGEL 184
LPA+ +G LV+ PL+SL++DQ+M L LGI A ML S++SKE K ++ + L
Sbjct: 125 LPALCSDGFTLVICPLISLMEDQLMVLQQLGISATMLNSSSSKEHVKCVHTEMMNKNSHL 184
Query: 185 KMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQ 244
K++YVTPEKI+KSK FMS+LEK + AGRL+ +++DE HCCSQWGHDFRPDYK LGILK Q
Sbjct: 185 KLIYVTPEKIAKSKMFMSRLEKAYEAGRLTGVAVDEVHCCSQWGHDFRPDYKALGILKRQ 244
Query: 245 FPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEI 304
FP++ ++ LTATAT V D ++L + KC+ F ++ NRPNL+Y VR+K S + I+ I
Sbjct: 245 FPNISLIGLTATATNHVLKDAQKILCVEKCLTFTASFNRPNLYYEVRQKPSSAEDFIENI 304
Query: 305 AKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKN 364
A I Y +SGI+YCFS+K+ EQV L++ G+ A YHA+M+ R KVH +WS N
Sbjct: 305 ANLINGRY-KGKSGIIYCFSQKDSEQVTISLQKLGVRAGTYHANMEPEDRTKVHTQWSAN 363
Query: 365 KLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADV 424
+LQV+V TVAFGMGI+KPDVRFVIHHS+SKS+E YYQESGRAGRD ++C+L++ D+
Sbjct: 364 ELQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDWRADCILYYGFGDI 423
Query: 425 PRQSSMVFYENSGLQNLYDIVRYSQYPLHWNIEKVR-LVIFEKLQQV------NLFC--- 474
R SSMV EN G Q LY++V Y Q NI K R +I + +V N C
Sbjct: 424 FRISSMVVMENVGQQKLYEMVSYCQ-----NISKCRRALIAQHFDEVWNADACNKMCDNC 478
Query: 475 -------MVVLAGHAQCIISLLQDIQDNNQRLTMLQLVD 506
+ H Q +I +L+ + N++LT L+L+D
Sbjct: 479 CKDDSFEKKNITEHCQALIKILKQAEGLNEKLTPLKLID 517
Score = 83 (34.3 bits), Expect = 4.5e-124, Sum P(2) = 4.5e-124
Identities = 32/126 (25%), Positives = 65/126 (51%)
Query: 481 HAQCIISLLQDIQDNNQRLTMLQLVDKM------KIKLKEIDSD-LKREEIEQLVLQLII 533
H Q +I +L+ + N++LT L+L+D K ++ + L RE++E++++ ++
Sbjct: 492 HCQALIKILKQAEGLNEKLTPLKLIDAWMGKGAAKFRVAGVAVPALPREDLEKIIVHALL 551
Query: 534 DRVLVRIGPFSPGKKIIKLEI---SSVQKN-----TADNKKSTKRSLTSSALEF-ELDEL 584
+ L F+ I L++ +S+ N T K+ST+ S+ +++ E E+D
Sbjct: 552 QQYLKEDYSFTAYATISYLKVGPRASLLSNEGHAVTMQVKRSTQSSVRAASPEACEVDSK 611
Query: 585 RKELAS 590
KE +S
Sbjct: 612 GKEKSS 617
>UNIPROTKB|Q6AYJ1 [details] [associations]
symbol:Recql "ATP-dependent DNA helicase Q1" species:10116
"Rattus norvegicus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF09382 PROSITE:PS51194 SMART:SM00490 RGD:1311071
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
KO:K10899 HOGENOM:HOG000044388 CTD:5965 HOVERGEN:HBG057654
EMBL:BC079026 IPI:IPI00366306 RefSeq:NP_001012098.1
UniGene:Rn.203166 ProteinModelPortal:Q6AYJ1 SMR:Q6AYJ1
STRING:Q6AYJ1 PRIDE:Q6AYJ1 Ensembl:ENSRNOT00000065576 GeneID:312824
KEGG:rno:312824 UCSC:RGD:1311071 NextBio:665291 ArrayExpress:Q6AYJ1
Genevestigator:Q6AYJ1 GermOnline:ENSRNOG00000012602 Uniprot:Q6AYJ1
Length = 621
Score = 1157 (412.3 bits), Expect = 4.5e-124, Sum P(2) = 4.5e-124
Identities = 238/519 (45%), Positives = 334/519 (64%)
Query: 6 ILQELENVEAEVRLVQEQIKQLVDRQDQLYERQSELKSLLEAFEASRGSPIQYGGSSSTA 65
+ ELE+V +E+ V QI++L +RQ +L +R+S L ++ + S + G T+
Sbjct: 7 LTDELESVSSELHAVDIQIQELTERQHELLQRKSVLTKRIK--QCLEDSAAEASGDCDTS 64
Query: 66 VENWSGT-FEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQ 124
WS F W + V +VF + +R Q E +NA ++ +D+ ++M GGGKSLCYQ
Sbjct: 65 PAAWSKEDFPWSGKVKHVLRDVFKLQKFRPLQLETVNATMARKDIFLVMPTGGGKSLCYQ 124
Query: 125 LPAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGEL 184
LPA+ +G LV+ PL+SL++DQ+M L LGI A ML S++SKE K ++ + L
Sbjct: 125 LPALCSDGFTLVICPLISLMEDQLMVLQQLGISATMLNSSSSKEHVKCVHTEMMNKNSHL 184
Query: 185 KMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQ 244
K++YVTPEKI+KSK FMS+LEK + AGRL+ +++DE HCCSQWGHDFRPDYK LGILK Q
Sbjct: 185 KLIYVTPEKIAKSKMFMSRLEKAYEAGRLTGVAVDEVHCCSQWGHDFRPDYKALGILKRQ 244
Query: 245 FPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEI 304
FP++ ++ LTATAT V D ++L + KC+ F ++ NRPNL+Y VR+K S + I+ I
Sbjct: 245 FPNISLIGLTATATNHVLKDAQKILCVEKCLTFTASFNRPNLYYEVRQKPSSAEDFIENI 304
Query: 305 AKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKN 364
A I Y +SGI+YCFS+K+ EQV L++ G+ A YHA+M+ R KVH +WS N
Sbjct: 305 ANLINGRY-KGKSGIIYCFSQKDSEQVTISLQKLGVRAGTYHANMEPEDRTKVHTQWSAN 363
Query: 365 KLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADV 424
+LQV+V TVAFGMGI+KPDVRFVIHHS+SKS+E YYQESGRAGRD ++C+L++ D+
Sbjct: 364 ELQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDWRADCILYYGFGDI 423
Query: 425 PRQSSMVFYENSGLQNLYDIVRYSQYPLHWNIEKVR-LVIFEKLQQV------NLFC--- 474
R SSMV EN G Q LY++V Y Q NI K R +I + +V N C
Sbjct: 424 FRISSMVVMENVGQQKLYEMVSYCQ-----NISKCRRALIAQHFDEVWNADACNKMCDNC 478
Query: 475 -------MVVLAGHAQCIISLLQDIQDNNQRLTMLQLVD 506
+ H Q +I +L+ + N++LT L+L+D
Sbjct: 479 CKDDSFEKKNITEHCQALIKILKQAEGLNEKLTPLKLID 517
Score = 83 (34.3 bits), Expect = 4.5e-124, Sum P(2) = 4.5e-124
Identities = 32/126 (25%), Positives = 65/126 (51%)
Query: 481 HAQCIISLLQDIQDNNQRLTMLQLVDKM------KIKLKEIDSD-LKREEIEQLVLQLII 533
H Q +I +L+ + N++LT L+L+D K ++ + L RE++E++++ ++
Sbjct: 492 HCQALIKILKQAEGLNEKLTPLKLIDAWMGKGAAKFRVAGVAVPALPREDLEKIIVHALL 551
Query: 534 DRVLVRIGPFSPGKKIIKLEI---SSVQKN-----TADNKKSTKRSLTSSALEF-ELDEL 584
+ L F+ I L++ +S+ N T K+ST+ S+ +++ E E+D
Sbjct: 552 QQYLKEDYSFTAYATISYLKVGPRASLLSNEGHAVTMQVKRSTQSSVRAASPEACEVDSK 611
Query: 585 RKELAS 590
KE +S
Sbjct: 612 GKEKSS 617
>UNIPROTKB|F1PNP1 [details] [associations]
symbol:RECQL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF09382 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 GeneTree:ENSGT00550000074520
TIGRFAMs:TIGR00614 KO:K10899 OMA:ESSQTCH CTD:5965 EMBL:AAEX03015200
RefSeq:XP_543768.1 Ensembl:ENSCAFT00000019449 GeneID:486641
KEGG:cfa:486641 Uniprot:F1PNP1
Length = 646
Score = 1160 (413.4 bits), Expect = 5.7e-124, Sum P(2) = 5.7e-124
Identities = 236/520 (45%), Positives = 341/520 (65%)
Query: 6 ILQELENVEAEVRLVQEQIKQLVDRQDQLYERQSELKSLLEA-FEASRGSPIQYGGSSST 64
+ +EL+++ E+ V QI++L++RQ +L ++++ L + ++ EAS SS
Sbjct: 7 LTEELDSITNELHAVDIQIQELLERQQELIQKKNILTNRIKQHLEASDVGESSESDSSPA 66
Query: 65 AVENWSGT-FEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCY 123
A W+ F W S+ DV N+F + +R Q E IN +SG+DV ++M GGGKSLCY
Sbjct: 67 A---WNKEDFPWSSKVKDVLQNIFKLQRFRLLQLETINVTMSGKDVFLVMPTGGGKSLCY 123
Query: 124 QLPAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGE 183
QLPA+ +G LV+ PL+SL++DQ+M L LGI A ML +++SKE K+++ + +
Sbjct: 124 QLPALCSDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMINKNSK 183
Query: 184 LKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKT 243
LK++YVTPEKI+KSK FMS+LEK + A R + I++DE HCCS WGHDFRPDYK LGILK
Sbjct: 184 LKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSHWGHDFRPDYKALGILKR 243
Query: 244 QFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDE 303
QFP+ +M LTATAT V D ++L + KC F ++ NRPNL+Y +R+K S + VI++
Sbjct: 244 QFPNTALMGLTATATSHVLKDAQKILCVGKCFTFTASFNRPNLYYEIRQKPSNTEDVIED 303
Query: 304 IAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSK 363
I K I Y +SGI+YCFS+K+ EQV L++ GI A YHA+M+ + +VH RWS
Sbjct: 304 IVKLINGRY-KGQSGIIYCFSQKDSEQVTVSLQKLGIQAGAYHANMEPEDKTRVHRRWSA 362
Query: 364 NKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPAD 423
N++QV+V TVAFGMGI+KPDVRF+IHHS+SKS+E YYQESGRAGRD + ++C+L++ D
Sbjct: 363 NEIQVVVATVAFGMGIDKPDVRFIIHHSMSKSIENYYQESGRAGRDDMKADCILYYGFGD 422
Query: 424 VPRQSSMVFYENSGLQNLYDIVRYSQYPLHWNIEKVRLVI----FEKL---QQVNLFC-- 474
+ R SSMV EN G Q LY++V Y Q NI K R V+ F+++ + N C
Sbjct: 423 IFRISSMVVMENVGQQKLYEMVSYCQ-----NISKCRRVLIAQHFDEVWNAEACNRMCDN 477
Query: 475 --------MVVLAGHAQCIISLLQDIQDNNQRLTMLQLVD 506
+ H + ++ +L+ +D N++LT L+L+D
Sbjct: 478 CCKDISCERKNVTAHCRDLVKILKQAEDLNEKLTPLKLID 517
Score = 79 (32.9 bits), Expect = 5.7e-124, Sum P(2) = 5.7e-124
Identities = 27/119 (22%), Positives = 58/119 (48%)
Query: 454 WNIEKVRLVIFEKLQQVNLFCMVVLAGHAQCIISLLQDIQDNNQRLTMLQLVDKM----- 508
WN E + + ++ V A H + ++ +L+ +D N++LT L+L+D
Sbjct: 466 WNAEACNRMCDNCCKDISCERKNVTA-HCRDLVKILKQAEDLNEKLTPLKLIDSWMGKGA 524
Query: 509 -KIKLKEI-DSDLKREEIEQLVLQLIIDRVLVRIGPFSPGKKIIKLEISSVQKNTADNK 565
K+++ + L RE++E+++ L++ + L F+ I L+I + N +N+
Sbjct: 525 AKLRVAGVAPPKLPREDLEKIIAHLLLQQYLKEDYSFTAYATISYLKIGP-KANLLNNE 582
>UNIPROTKB|F1SR01 [details] [associations]
symbol:RECQL "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0015630 "microtubule cytoskeleton" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000733 "DNA strand
renaturation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF09382 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0015630 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0000733
OMA:ESSQTCH EMBL:CU633485 EMBL:CU457490 Ensembl:ENSSSCT00000000624
Uniprot:F1SR01
Length = 649
Score = 1133 (403.9 bits), Expect = 1.9e-122, Sum P(3) = 1.9e-122
Identities = 232/519 (44%), Positives = 340/519 (65%)
Query: 8 QELENVEAEVRLVQEQIKQLVDRQDQLYERQSELKSLLE--AFEASRGSPIQYGGSSSTA 65
+EL+++ E+ V QI++L++RQ +L +++ L+ ++ + + G +Y SS A
Sbjct: 9 EELDSITNELHAVDIQIQELLERQQELIQKKKILEKRIKQCSEDPDAGESSEY--DSSPA 66
Query: 66 VENWSGT-FEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQ 124
+W+ F W + +V N+F + +R Q E IN +SG++V ++M GGGKSLCYQ
Sbjct: 67 --SWNKEDFPWSGKVKEVLQNIFKLQKFRPLQLETINVTMSGKEVFLVMPTGGGKSLCYQ 124
Query: 125 LPAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGEL 184
LPA+ +G LV+ PL+SL++DQ+M L LGI A ML +++SKE K+++ + +L
Sbjct: 125 LPALCSDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSKL 184
Query: 185 KMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQ 244
K++YVTPEKI+KSK FMS+LEK + A R + I+IDE HCCSQWGHDFRPDYK LGILK Q
Sbjct: 185 KLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAIDEVHCCSQWGHDFRPDYKALGILKRQ 244
Query: 245 FPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEI 304
FP+ ++ LTATAT V D ++L + KC F ++ NRPNL+Y VR+K S + I++I
Sbjct: 245 FPNTSLIGLTATATSHVLKDAQKILCVEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDI 304
Query: 305 AKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKN 364
K I Y +SGI+YCFS+K+ EQV L++ GI A YHA+M+ + VH RWS N
Sbjct: 305 VKLINGRY-KGQSGIIYCFSQKDSEQVTVSLQKLGIHAGAYHANMEPEDKTTVHRRWSAN 363
Query: 365 KLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADV 424
++QV+V TVAFGMGI+KPDVRFVIHHS+SKS+E YYQESGRAGRD ++C+L++ D+
Sbjct: 364 EIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDTKADCILYYGFGDI 423
Query: 425 PRQSSMVFYENSGLQNLYDIVRYSQYPLHWNIEKVRLVI----FEKL---QQVNLFC--- 474
R SSMV EN G Q LY++V Y Q NI K R V+ F+++ ++ N C
Sbjct: 424 FRISSMVVMENVGQQKLYEMVSYCQ-----NISKCRRVLIAQHFDEVWSPEECNKMCDNC 478
Query: 475 -------MVVLAGHAQCIISLLQDIQDNNQRLTMLQLVD 506
+ + + ++ +L+ ++ N++LT L+L+D
Sbjct: 479 CKDTSFERKNITAYCRDLVKILKQAEELNEKLTPLKLID 517
Score = 68 (29.0 bits), Expect = 1.9e-122, Sum P(3) = 1.9e-122
Identities = 21/95 (22%), Positives = 49/95 (51%)
Query: 478 LAGHAQCIISLLQDIQDNNQRLTMLQLVDKM------KIKLKEI-DSDLKREEIEQLVLQ 530
+ + + ++ +L+ ++ N++LT L+L+D K+++ I L RE++E+++
Sbjct: 489 ITAYCRDLVKILKQAEELNEKLTPLKLIDSWLGKGAAKLRVAGIAPPTLPREDLEKIIAH 548
Query: 531 LIIDRVLVRIGPFSPGKKIIKLEISSVQKNTADNK 565
+I + L F+ I L+I + N +N+
Sbjct: 549 FLIQQYLKEDYSFTAYATISYLKIGP-KANLLNNE 582
Score = 38 (18.4 bits), Expect = 1.9e-122, Sum P(3) = 1.9e-122
Identities = 6/32 (18%), Positives = 21/32 (65%)
Query: 1 METEEILQELENVEAEVRLVQEQIKQLVDRQD 32
++ +E+L+ + + + ++++++IKQ + D
Sbjct: 23 IQIQELLERQQELIQKKKILEKRIKQCSEDPD 54
>UNIPROTKB|P46063 [details] [associations]
symbol:RECQL "ATP-dependent DNA helicase Q1" species:9606
"Homo sapiens" [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA
helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000733 "DNA strand
renaturation" evidence=IDA] [GO:0003678 "DNA helicase activity"
evidence=IDA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA;TAS]
InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF09382
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0015630 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310 GO:GO:0004003
EMBL:CH471094 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 eggNOG:COG0514 TIGRFAMs:TIGR00614 GO:GO:0000733
EMBL:AC006559 KO:K10899 OMA:ESSQTCH HOGENOM:HOG000044388
EMBL:L36140 EMBL:D37984 EMBL:BT007119 EMBL:AK291627 EMBL:BC001052
IPI:IPI00178431 PIR:A58836 RefSeq:NP_002898.2 RefSeq:NP_116559.1
UniGene:Hs.235069 PDB:2V1X PDB:2WWY PDBsum:2V1X PDBsum:2WWY
ProteinModelPortal:P46063 SMR:P46063 DIP:DIP-29216N IntAct:P46063
STRING:P46063 PhosphoSite:P46063 DMDM:218512113 PaxDb:P46063
PRIDE:P46063 DNASU:5965 Ensembl:ENST00000421138
Ensembl:ENST00000444129 GeneID:5965 KEGG:hsa:5965 UCSC:uc001rex.3
CTD:5965 GeneCards:GC12M021621 H-InvDB:HIX0010478 HGNC:HGNC:9948
HPA:CAB009743 HPA:HPA030960 MIM:600537 neXtProt:NX_P46063
PharmGKB:PA34315 HOVERGEN:HBG057654 InParanoid:P46063
PhylomeDB:P46063 ChEMBL:CHEMBL1293236 ChiTaRS:RECQL
EvolutionaryTrace:P46063 GenomeRNAi:5965 NextBio:23220
ArrayExpress:P46063 Bgee:P46063 CleanEx:HS_RECQL
Genevestigator:P46063 GermOnline:ENSG00000004700 Uniprot:P46063
Length = 649
Score = 1143 (407.4 bits), Expect = 5.1e-121, Sum P(2) = 5.1e-121
Identities = 237/520 (45%), Positives = 339/520 (65%)
Query: 6 ILQELENVEAEVRLVQEQIKQLVDRQDQLYERQSEL-KSLLEAFEAS-RGSPIQYGGSSS 63
+ +EL+++ +E+ V+ QI++L +RQ +L +++ L K + + E S G+ +Y SS
Sbjct: 7 LTEELDSITSELHAVEIQIQELTERQQELIQKKKVLTKKIKQCLEDSDAGASNEY--DSS 64
Query: 64 TAVENWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCY 123
A N F W + D+ NVF + +R Q E IN ++G++V ++M GGGKSLCY
Sbjct: 65 PAAWN-KEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCY 123
Query: 124 QLPAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGE 183
QLPA+ +G LV+ PL+SL++DQ+M L LGI A ML +++SKE K+++ + E
Sbjct: 124 QLPALCSDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSE 183
Query: 184 LKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKT 243
LK++YVTPEKI+KSK FMS+LEK + A R + I++DE HCCSQWGHDFRPDYK LGILK
Sbjct: 184 LKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKR 243
Query: 244 QFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDE 303
QFP+ ++ LTATAT V D ++L I KC F ++ NRPNL+Y VR+K S + I++
Sbjct: 244 QFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIED 303
Query: 304 IAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSK 363
I K I Y +SGI+YCFS+K+ EQV L+ GI A YHA+++ + VH +WS
Sbjct: 304 IVKLINGRY-KGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSA 362
Query: 364 NKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPAD 423
N++QV+V TVAFGMGI+KPDVRFVIHHS+SKS+E YYQESGRAGRD + ++C+L++ D
Sbjct: 363 NEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGD 422
Query: 424 VPRQSSMVFYENSGLQNLYDIVRYSQYPLHWNIEKVRLVI----FEKL---QQVNLFCMV 476
+ R SSMV EN G Q LY++V Y Q NI K R V+ F+++ + N C
Sbjct: 423 IFRISSMVVMENVGQQKLYEMVSYCQ-----NISKCRRVLMAQHFDEVWNSEACNKMCDN 477
Query: 477 VLAGHA--------QC--IISLLQDIQDNNQRLTMLQLVD 506
A C +I +L+ ++ N++LT L+L+D
Sbjct: 478 CCKDSAFERKNITEYCRDLIKILKQAEELNEKLTPLKLID 517
Score = 68 (29.0 bits), Expect = 5.1e-121, Sum P(2) = 5.1e-121
Identities = 23/88 (26%), Positives = 46/88 (52%)
Query: 485 IISLLQDIQDNNQRLTMLQLVD----KMKIKLKE---IDSDLKREEIEQLVLQLIIDRVL 537
+I +L+ ++ N++LT L+L+D K KL+ + L RE++E+++ +I + L
Sbjct: 496 LIKILKQAEELNEKLTPLKLIDSWMGKGAAKLRVAGVVAPTLPREDLEKIIAHFLIQQYL 555
Query: 538 VRIGPFSPGKKIIKLEISSVQKNTADNK 565
F+ I L+I + N +N+
Sbjct: 556 KEDYSFTAYATISYLKIGP-KANLLNNE 582
>MGI|MGI:103021 [details] [associations]
symbol:Recql "RecQ protein-like" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000733 "DNA
strand renaturation" evidence=ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003678 "DNA helicase activity" evidence=ISO] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0032508 "DNA duplex
unwinding" evidence=ISO] [GO:0043140 "ATP-dependent 3'-5' DNA
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF09382 PROSITE:PS51194
SMART:SM00490 MGI:MGI:103021 GO:GO:0005524 GO:GO:0005634
GO:GO:0015630 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0000733 EMBL:CH466572 KO:K10899 OMA:ESSQTCH
HOGENOM:HOG000044388 CTD:5965 HOVERGEN:HBG057654 EMBL:AB017104
EMBL:AB017105 EMBL:AK137589 EMBL:AK164344 IPI:IPI00129401
IPI:IPI00230278 RefSeq:NP_001191836.1 RefSeq:NP_075529.2
UniGene:Mm.27407 ProteinModelPortal:Q9Z129 SMR:Q9Z129 STRING:Q9Z129
PhosphoSite:Q9Z129 PaxDb:Q9Z129 PRIDE:Q9Z129
Ensembl:ENSMUST00000032370 Ensembl:ENSMUST00000111803 GeneID:19691
KEGG:mmu:19691 InParanoid:Q3TPI5 OrthoDB:EOG4THVSK NextBio:297024
Bgee:Q9Z129 CleanEx:MM_RECQL Genevestigator:Q9Z129
GermOnline:ENSMUSG00000030243 Uniprot:Q9Z129
Length = 648
Score = 1142 (407.1 bits), Expect = 1.1e-120, Sum P(2) = 1.1e-120
Identities = 233/519 (44%), Positives = 337/519 (64%)
Query: 6 ILQELENVEAEVRLVQEQIKQLVDRQDQLYERQSELKSLLEAFEASRGSPIQYGGSSSTA 65
+ +ELE+V +E+ + QI++L +R+ +L +R+S L ++ + S + T+
Sbjct: 7 LTEELESVASELHAIDIQIQELTERRQELLQRKSVLTGKIKQY--LEDSSAEASSDLDTS 64
Query: 66 VENWSGT-FEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQ 124
W+ F W + DV NVF + +R Q E IN ++ +D+ ++M GGGKSLCYQ
Sbjct: 65 PAAWNKEDFPWFGKVKDVLQNVFKLQKFRPLQLETINVTMARKDIFLVMPTGGGKSLCYQ 124
Query: 125 LPAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGEL 184
LPA+ +G LV+ PL+SL++DQ+M L LGI A ML +++SKE K+++ + +L
Sbjct: 125 LPALCSDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSQL 184
Query: 185 KMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQ 244
K++YVTPEKI+KSK FMS+LEK + AGRL+ ++DE HCCSQWGHDFRPDYK LGILK Q
Sbjct: 185 KLIYVTPEKIAKSKMFMSRLEKAYEAGRLTGAAVDEVHCCSQWGHDFRPDYKALGILKRQ 244
Query: 245 FPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEI 304
FP+ +M LTATAT V D+ ++L + KC+ F ++ NRPNLFY VR+K S + ++I
Sbjct: 245 FPNASLMGLTATATNHVLKDVQKILCVGKCLTFTASFNRPNLFYEVRQKPSSAEDFTEDI 304
Query: 305 AKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKN 364
K I Y +SGI+YCFS+K+ EQ+ L++ GI A YHA+M+ + KVH +WS N
Sbjct: 305 VKLINGRY-KGQSGIIYCFSQKDSEQITISLQKLGIHAGTYHANMEPEDKTKVHTQWSAN 363
Query: 365 KLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADV 424
+LQV+V TVAFGMGI+KPDVRFVIHHS+SKS+E YYQESGRAGRD ++C+L++ D+
Sbjct: 364 ELQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDSRADCILYYGFGDI 423
Query: 425 PRQSSMVFYENSGLQNLYDIVRYSQYPLHWNIEKVRLVI----FEKLQQVNLF------- 473
R SSMV EN G Q LY++V Y Q N+ K R V+ F+++ +
Sbjct: 424 FRISSMVVMENVGQQKLYEMVSYCQ-----NVSKCRRVLIAQHFDEVWNADACNKMCDNC 478
Query: 474 CMVV------LAGHAQCIISLLQDIQDNNQRLTMLQLVD 506
C V + H + +I +L+ + N++LT L+L+D
Sbjct: 479 CKDVSFEKKNVTQHCRDLIKILKQAEGLNEKLTPLKLID 517
Score = 66 (28.3 bits), Expect = 1.1e-120, Sum P(2) = 1.1e-120
Identities = 27/116 (23%), Positives = 54/116 (46%)
Query: 481 HAQCIISLLQDIQDNNQRLTMLQLVD----KMKIKLKE---IDSDLKREEIEQLVLQLII 533
H + +I +L+ + N++LT L+L+D K KL+ + L RE++E++V ++
Sbjct: 492 HCRDLIKILKQAEGLNEKLTPLKLIDAWMGKGAAKLRVAGVVAPALPREDLERIVAHALL 551
Query: 534 DRVLVRIGPFSPGKKIIKLEI---SSVQKNTADNKKSTKRSLTSSALEFELDELRK 586
+ L F+ I L++ + + N A + S++ L E R+
Sbjct: 552 QQYLKEDYSFTAYATISYLKVGPRACLLSNEAHAVTMQVKKSAQSSVRGALSEARQ 607
>UNIPROTKB|A0JN36 [details] [associations]
symbol:RECQL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0015630 "microtubule cytoskeleton" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0000733 "DNA strand renaturation"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0015630
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
eggNOG:COG0514 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0000733 GO:GO:0008026 KO:K10899 OMA:ESSQTCH
HOGENOM:HOG000044388 CTD:5965 HOVERGEN:HBG057654 OrthoDB:EOG4THVSK
EMBL:DAAA02014122 EMBL:DAAA02014123 EMBL:BC126495 IPI:IPI00692480
RefSeq:NP_001071459.1 UniGene:Bt.13736 SMR:A0JN36 STRING:A0JN36
Ensembl:ENSBTAT00000028079 GeneID:533006 KEGG:bta:533006
InParanoid:A0JN36 NextBio:20875874 Uniprot:A0JN36
Length = 649
Score = 1138 (405.7 bits), Expect = 1.4e-120, Sum P(2) = 1.4e-120
Identities = 237/521 (45%), Positives = 340/521 (65%)
Query: 8 QELENVEAEVRLVQEQIKQLVDRQDQLYERQSEL----KSLLEAFEASRGSPIQYGGSSS 63
+EL+++ +E+ V QI++L++RQ +L ++++ L K LE +A S SS
Sbjct: 9 EELDSITSELHAVDIQIQELLERQQELIQKKNVLTKRIKLCLEDSDAGESSECD----SS 64
Query: 64 TAVENWSGT-FEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLC 122
A +W+ F W + DV NVF + +R Q E IN +SG++V ++M GGGKSLC
Sbjct: 65 PA--SWNKEDFPWSGKVKDVLQNVFKLQKFRPLQLETINVTMSGKEVFLVMPTGGGKSLC 122
Query: 123 YQLPAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEG 182
YQLPA+ +G LV+ PL+SL++DQ+M L LGI A ML +++ KE K+++ +
Sbjct: 123 YQLPALCSDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSPKEHVKWVHAEMVNKNS 182
Query: 183 ELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILK 242
+LK++YVTPEKI+KSK FMS+LEK + A R + I++DE HCCSQWGHDFRPDYK LGILK
Sbjct: 183 KLKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILK 242
Query: 243 TQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVID 302
QFP+ ++ LTATAT V D ++L + KC F ++ NRPNL+Y VR+K S + I+
Sbjct: 243 RQFPNASLIGLTATATSHVLKDAQKILCVEKCFTFTASFNRPNLYYEVRQKPSNTEDFIE 302
Query: 303 EIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWS 362
+I K I Y +SGI+YCFS+K+ EQV L++ GI A YHA+M+ + KVH RW+
Sbjct: 303 DIVKLINGRY-KGQSGIIYCFSQKDSEQVTISLQKLGIPAGAYHANMEPEDKTKVHRRWA 361
Query: 363 KNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPA 422
N++QV+V TVAFGMGI+KPDVRFVIHHS+SKS+E YYQESGRAGRD + ++C+L++
Sbjct: 362 ANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFG 421
Query: 423 DVPRQSSMVFYENSGLQNLYDIVRYSQYPLHWNIEKVRLVI----FEKL---QQVNLFC- 474
D+ R SSMV EN G Q LY++V Y Q NI K R V+ F+++ + N C
Sbjct: 422 DIFRISSMVVMENVGQQKLYEMVSYCQ-----NINKCRRVLIAQHFDEVWSPEACNKMCD 476
Query: 475 ---------MVVLAGHAQCIISLLQDIQDNNQRLTMLQLVD 506
+ + + +I +L+ +D N++LT L+L+D
Sbjct: 477 NCCKEISFERKNVTAYCRDLIKILKQAEDLNEKLTPLKLID 517
Score = 69 (29.3 bits), Expect = 1.4e-120, Sum P(2) = 1.4e-120
Identities = 23/93 (24%), Positives = 48/93 (51%)
Query: 482 AQC--IISLLQDIQDNNQRLTMLQLVDKM------KIKLKEI-DSDLKREEIEQLVLQLI 532
A C +I +L+ +D N++LT L+L+D K+++ + L RE++E+++ +
Sbjct: 491 AYCRDLIKILKQAEDLNEKLTPLKLIDSWMGKGASKLRVAGLAPPTLPREDLEKIIAHFL 550
Query: 533 IDRVLVRIGPFSPGKKIIKLEISSVQKNTADNK 565
I + L F+ I L++ + N +N+
Sbjct: 551 IQQYLKEDYSFTAYATISYLKVGP-KANLLNNE 582
>ZFIN|ZDB-GENE-050809-134 [details] [associations]
symbol:recql "RecQ protein-like (DNA helicase
Q1-like)" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF09382 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-050809-134 GO:GO:0005524 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
EMBL:BX914215 IPI:IPI00933301 Ensembl:ENSDART00000101198
Uniprot:F1Q4T3
Length = 640
Score = 1082 (385.9 bits), Expect = 1.6e-109, P = 1.6e-109
Identities = 233/556 (41%), Positives = 358/556 (64%)
Query: 4 EEILQELENVEAEVRLVQEQIKQLVDRQDQLYERQSELKSLLEAFEASRGSPIQYGGSSS 63
++ +EL++VEAE+ +V+ QI +L+++Q +L R+++L +LE S P G +
Sbjct: 5 DDAREELDSVEAELEMVELQISELLEKQTRLNSRKNKLLKVLEG-ACSSAQPSGSGKTPK 63
Query: 64 TA-----VENWSGT-FEWDSRADDVRL-NVFGIPAYRANQQEIINAVLSGRDVLVIMAAG 116
++ ++++ + F W S+ V L N+F + +R Q+ IN +SG+D+ ++M G
Sbjct: 64 SSFSKQDLQHYEDSDFSW-SKEVQVNLCNIFQLSKFRPLQRAAINLSMSGKDLFLVMPTG 122
Query: 117 GGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKA 176
GKSLCYQLPA+ +G LV++PL+SL++DQ+M L ++ +PA L +++SKED K I
Sbjct: 123 RGKSLCYQLPALCSKGFTLVIAPLVSLMEDQLMYLQSVNVPAVTLNASSSKEDSKRILAG 182
Query: 177 LEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYK 236
+ K+LYVTPEKI+KSK MSKLEK + G L+ I++DE HCCSQWGHDFRPDYK
Sbjct: 183 MTDKNSPFKLLYVTPEKIAKSKLLMSKLEKAFNMGLLARIAVDEVHCCSQWGHDFRPDYK 242
Query: 237 NLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSV 296
LGILK QFP+VP++ LTATAT V D ++L +++ + + NRPNL+Y VR K +
Sbjct: 243 LLGILKRQFPNVPLIGLTATATSNVLKDCQKILCVQEPVTLTAPFNRPNLYYEVRFKDN- 301
Query: 297 GKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREK 356
+ D+IA I+ Y N +SGIVY FS+K+ E VA EL++R I A YHA+M+ + +
Sbjct: 302 -EDCTDQIASLIRGRYKN-QSGIVYVFSQKDAEVVATELQKRDIVAQPYHANMEPSHKSL 359
Query: 357 VHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECL 416
VH RWS K+QV+V TVAFGMGI+K DVRFVIHH++SKS+E YYQESGRAGRD P++C+
Sbjct: 360 VHQRWSSKKIQVVVATVAFGMGIDKADVRFVIHHTISKSIENYYQESGRAGRDDSPADCI 419
Query: 417 LFFRPADVPRQSSMVFYENSGLQNLYDIVRYSQ---------YPLH----WNIEKVRLVI 463
+FF D+ R S+MV EN+G Q L+++V Y Q +H WN E+ +
Sbjct: 420 VFFGFMDIFRISTMVVMENTGQQKLHNMVAYCQNVDRCRRAMMAIHFDEVWNDEECNEMC 479
Query: 464 FEKLQQVNLFCMVVLAGHAQCIISLLQDIQDNNQRLTMLQLVD----KMKIKLKEID--S 517
+ + N + + + HA+ ++ +++ +++LT L++ D K K +++ +
Sbjct: 480 -DVCRHGNDYITMDITQHARDVLHIVELASSMDEKLTPLKVCDAWLGKGPAKQRKMIKLT 538
Query: 518 DLKREEIEQLVLQLII 533
L R E+E +++ L++
Sbjct: 539 SLSRLEVESVIIHLLL 554
>WB|WBGene00019334 [details] [associations]
symbol:K02F3.12 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
EMBL:FO080195 HSSP:P15043 KO:K10899 OMA:ESSQTCH
RefSeq:NP_001022656.1 RefSeq:NP_001022657.1
ProteinModelPortal:Q9TXJ8 SMR:Q9TXJ8 EnsemblMetazoa:K02F3.12a
GeneID:175246 KEGG:cel:CELE_K02F3.12 UCSC:K02F3.12a CTD:175246
WormBase:K02F3.12a HOGENOM:HOG000044388 InParanoid:Q9TXJ8
NextBio:887386 Uniprot:Q9TXJ8
Length = 631
Score = 1050 (374.7 bits), Expect = 1.7e-109, Sum P(2) = 1.7e-109
Identities = 210/440 (47%), Positives = 289/440 (65%)
Query: 10 LENVEAEVRLVQEQIKQLVDRQDQLYERQSELKSLLEAFEASRGSPIQYGGSSSTAVENW 69
L + E+ + +I Q+ + QL ++SEL +A E R ++ S + W
Sbjct: 29 LSKLSTELADLDGEIGQIDQQISQLRRKKSELTQKRQAIE--RKIELKTNEDSDVVTDRW 86
Query: 70 SGT-FEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAV 128
F W A + F + +R Q+ INAV+S D +VI++ GGGKSLCYQLPA+
Sbjct: 87 DRDGFPWSDEATKILKEQFHLEKFRPLQRAAINAVMSKEDAVVILSTGGGKSLCYQLPAL 146
Query: 129 LREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLY 188
L G+ALVVSPL+SL++DQ++ L +LGI + L + TSKE+ K + A+ + + ++LY
Sbjct: 147 LANGLALVVSPLISLVEDQILQLRSLGIDSSSLNANTSKEEAKRVEDAITNKDSKFRLLY 206
Query: 189 VTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDV 248
VTPEK++KSK+ M+KLEK G L LI+IDE HCCSQWGHDFR DY L +LK QF V
Sbjct: 207 VTPEKLAKSKKMMNKLEKSLSVGFLKLIAIDEVHCCSQWGHDFRTDYSFLNVLKRQFKGV 266
Query: 249 PMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYI 308
P++ LTATAT V +D+ +ML I+ + F + NR NL Y V +K +EIAK I
Sbjct: 267 PILGLTATATSNVLDDVKDMLGIQAALTFRAGFNRSNLKYKVVQKPGSEDECTEEIAKTI 326
Query: 309 QESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQV 368
+ + ++GI+YC SR +CE+VA+ L+ GI A +YHA M+ R H W K+QV
Sbjct: 327 KRDFAG-QTGIIYCLSRNDCEKVAKALKSHGIKAKHYHAYMEPVDRSGAHQGWISGKIQV 385
Query: 369 IVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQS 428
IV TVAFGMGI+KP+VRFVIHHSL KS+E YYQESGRAGRDG P+ C+L++R AD+ +QS
Sbjct: 386 IVATVAFGMGIDKPNVRFVIHHSLPKSIENYYQESGRAGRDGQPATCILYYRLADIFKQS 445
Query: 429 SMVFYENSGLQNLYDIVRYS 448
SMV E +G+QNLY++VRY+
Sbjct: 446 SMVQQERTGIQNLYNMVRYA 465
Score = 52 (23.4 bits), Expect = 1.7e-109, Sum P(2) = 1.7e-109
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 489 LQDIQDNNQRLTMLQLVDKMKIKLKEIDSDLKREEIEQLVLQLIIDRVL 537
L +D + R+T +LV+ + KLK RE E+L++ L+++ L
Sbjct: 528 LNSAKDGSGRITGNKLVELLTKKLK---GSRNREFCEKLIVNLLLEGYL 573
>DICTYBASE|DDB_G0292130 [details] [associations]
symbol:blm "Bloom syndrome protein" species:44689
"Dictyostelium discoideum" [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA;ISS] [GO:0006281 "DNA repair" evidence=IEA;ISS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IC] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00490 SMART:SM00956
dictyBase:DDB_G0292130 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000155_GR EMBL:AAFI02000187 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 eggNOG:COG0514 KO:K10901
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
RefSeq:XP_629849.1 ProteinModelPortal:Q54DM3 STRING:Q54DM3
EnsemblProtists:DDB0233082 GeneID:8628529 KEGG:ddi:DDB_G0292130
InParanoid:Q54DM3 OMA:IANCEAS ProtClustDB:CLSZ2846594
Uniprot:Q54DM3
Length = 1259
Score = 958 (342.3 bits), Expect = 4.6e-101, Sum P(2) = 4.6e-101
Identities = 184/368 (50%), Positives = 253/368 (68%)
Query: 69 WSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAV 128
+ G F W + D+ ++FG +R NQ+EIIN+ L G D V+M GGGKSLCYQ+PA+
Sbjct: 504 FKGNFPWSQKIIDINRSMFGFHVFRENQREIINSTLEGNDTFVLMPTGGGKSLCYQIPAL 563
Query: 129 LREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLY 188
++G+ +V+SPL+SLI DQV L LG PA L+S S + +YK + ++++LY
Sbjct: 564 YQKGLTIVISPLISLINDQVEFLETLGYPAAALSSAVSSDAAIDVYKDIRSNSPKIRLLY 623
Query: 189 VTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDV 248
+TPE++ KS + L G S I IDEAHC SQWGHDFRPDYK L IL+ +FP V
Sbjct: 624 LTPERVVKSDSLIEILANLDQKGLFSRIVIDEAHCVSQWGHDFRPDYKELSILRRKFPKV 683
Query: 249 PMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYI 308
P++ALTATAT++V+ND++ L +R + F + NRPNL Y V +K+ K V+D+++K+I
Sbjct: 684 PILALTATATERVRNDVIYNLSMRNPVCFKQSFNRPNLIYQVLKKT---KQVVDDMSKFI 740
Query: 309 QESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQV 368
+YP+ +SGIVYC S+ +CE VA+ LR+ ISA +YHA ++ + R KV W K +++V
Sbjct: 741 HSTYPD-KSGIVYCISKYDCENVAKRLRELKISAAHYHAGLENDERAKVQANWQKGRIKV 799
Query: 369 IVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQS 428
IV T+AFGMGINK DVRFVIHHS+ KS+E YYQESGRAGRDG S CLL+F AD R
Sbjct: 800 IVATIAFGMGINKADVRFVIHHSVPKSLEGYYQESGRAGRDGGISHCLLYFSWADKLRND 859
Query: 429 SMVFYENS 436
++ +NS
Sbjct: 860 LLI--QNS 865
Score = 64 (27.6 bits), Expect = 4.6e-101, Sum P(2) = 4.6e-101
Identities = 25/106 (23%), Positives = 50/106 (47%)
Query: 487 SLLQDIQDNNQRLTMLQLVDKMKI-KLKEIDSDLKREEIEQLVLQLIIDRVLVRIGPFSP 545
+L+ DI ++ +L+ + I L I + ++ EIE+++ QL+ D +L +P
Sbjct: 952 NLIIDIFKGSKGKKVLEKCAQSGITNLHGIGKNWQKHEIERILHQLLRDNILKETISQNP 1011
Query: 546 -GKKIIKLEISSVQKNTADNKKSTKRSLTSSALEFELDELRKELAS 590
G L + S N N+K+ S S+ + + +K+ +S
Sbjct: 1012 YGGTYSHLSVGSYADNLLRNQKNVTLSFRSTPAKKTVSAAKKKKSS 1057
>TAIR|locus:2197394 [details] [associations]
symbol:RECQ4A species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA;IMP] [GO:0006310 "DNA
recombination" evidence=IEA;IMP] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;ISS] [GO:0043140 "ATP-dependent
3'-5' DNA helicase activity" evidence=IEA] [GO:0070417 "cellular
response to cold" evidence=IEP] [GO:0071215 "cellular response to
abscisic acid stimulus" evidence=IEP] [GO:0000723 "telomere
maintenance" evidence=IMP] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IGI;RCA;IMP] [GO:0006974
"response to DNA damage stimulus" evidence=IGI;IMP] [GO:0043138
"3'-5' DNA helicase activity" evidence=IMP;IDA] [GO:0051276
"chromosome organization" evidence=IMP] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00490 SMART:SM00956
Prosite:PS00018 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0009506 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0006260 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0000724 EMBL:U95973 GO:GO:0071215 GO:GO:0070417 GO:GO:0051276
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 KO:K10901 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0043138 HSSP:P15043 EMBL:AJ404473
EMBL:AY120761 EMBL:BT010133 IPI:IPI00538289 PIR:B86243
RefSeq:NP_172562.2 UniGene:At.10177 ProteinModelPortal:Q8L840
SMR:Q8L840 STRING:Q8L840 PaxDb:Q8L840 PRIDE:Q8L840
EnsemblPlants:AT1G10930.1 GeneID:837636 KEGG:ath:AT1G10930
TAIR:At1g10930 HOGENOM:HOG000148634 InParanoid:Q8L840 OMA:QLPALIC
PhylomeDB:Q8L840 ProtClustDB:PLN03137 Genevestigator:Q8L840
Uniprot:Q8L840
Length = 1188
Score = 919 (328.6 bits), Expect = 2.0e-98, Sum P(2) = 2.0e-98
Identities = 208/508 (40%), Positives = 300/508 (59%)
Query: 67 ENWSGT-FEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQL 125
+ WS F W + + VFG ++R NQ+EIINA +SG DV V+M GGGKSL YQL
Sbjct: 428 KKWSSREFPWTRKLEVNNKKVFGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQL 487
Query: 126 PAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELK 185
PA++ GI LV+SPL+SLIQDQ+M L IPA L++ ++ I++ L + K
Sbjct: 488 PALICGGITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLKIFQELNSEHSKYK 547
Query: 186 MLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQF 245
+LYVTPEK++KS + LE + G L+ IDEAHC SQWGHDFRPDY++LGILK +F
Sbjct: 548 LLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQSLGILKQKF 607
Query: 246 PDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIA 305
P++P++ALTATAT V+ D+++ L + C+ F + NRPNL+Y V K+ K +++I
Sbjct: 608 PNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKT---KKCLEDID 664
Query: 306 KYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNK 365
K+I+E++ + E GI+YC SR +CE+V++ L++ G A +YH M+ R + +WSK++
Sbjct: 665 KFIKENHFD-ECGIIYCLSRMDCEKVSERLQEFGHKAAFYHGSMEPEQRAFIQTQWSKDE 723
Query: 366 LQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVP 425
+ +I TVAFGMGINKPDVRFVIHHSL KS+E Y+QE GRAGRDG S C+L++ D
Sbjct: 724 INIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYGYGDYI 783
Query: 426 RQSSMVFY---ENSGLQNLYDIVRYSQYPLHWNIEKV-RLVIF-EKLQQVNLFCMVVLAG 480
R M+ + S + Y+ V S L N E + R+V + E + F +V G
Sbjct: 784 RVKHMISQGGVDQSPMATGYNRVASSGRLLETNTENLLRMVRYCENEVECRRFLQLVHLG 843
Query: 481 HA-----------QCIISLLQDIQDNNQRLTMLQLVDKMKIKLKEIDSDLKREEIEQLVL 529
C S Q + D + L QLV+ +K + S E +
Sbjct: 844 EKFDSTNCKKTCDNCCSS--QSLIDKDVTLITRQLVELVKQTGERFSSAHILEVYRGSLN 901
Query: 530 QLIIDRVLVRIGPFSPGKKIIKLEISSV 557
Q++ + GK + K+E+S +
Sbjct: 902 QMVKKHRHETLQFHGAGKHLSKIEVSRI 929
Score = 78 (32.5 bits), Expect = 2.0e-98, Sum P(2) = 2.0e-98
Identities = 31/114 (27%), Positives = 53/114 (46%)
Query: 542 PFSPGKKIIKLEISSVQKNTAD--NKKSTKRSLTSSALEFE-LDELRKELASIS-GGILP 597
P G K ++S +++T + + + + SA + L +LR L + G++
Sbjct: 986 PSKQGATAAKGPLTSEKQSTLPLTTEDAPPKDVNLSANMYTALRKLRTALVKEAPDGVMA 1045
Query: 598 HSVLSSQLIRLISARKPSTMEEASSNHLE-KIIGKLKTGKYGSRILEVISKCGN 650
+ + + ++ IS R P T EE LE +GK K KYG ++LE I N
Sbjct: 1046 YHIFINSTLQQISRRIPRTKEEL----LEINGLGKAKVSKYGDQLLETIETTVN 1095
>FB|FBgn0002906 [details] [associations]
symbol:Blm "Bloom syndrome helicase ortholog" species:7227
"Drosophila melanogaster" [GO:0006302 "double-strand break repair"
evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0006974 "response to DNA damage stimulus"
evidence=IGI;IMP] [GO:0004386 "helicase activity" evidence=ISS]
[GO:0003678 "DNA helicase activity" evidence=ISS] [GO:0000731 "DNA
synthesis involved in DNA repair" evidence=IMP] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0045003 "double-strand break repair via synthesis-dependent
strand annealing" evidence=IMP] [GO:0032508 "DNA duplex unwinding"
evidence=IDA] [GO:0000732 "strand displacement" evidence=IDA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0000403 "Y-form DNA binding" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0000733 "DNA strand renaturation"
evidence=IDA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IDA] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IMP] [GO:0007131 "reciprocal
meiotic recombination" evidence=IMP] [GO:1901291 "negative
regulation of double-strand break repair via single-strand
annealing" evidence=IMP] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00490 SMART:SM00956 EMBL:AE014297
GO:GO:0005524 GO:GO:0005634 GO:GO:0006260 Gene3D:1.10.10.10
InterPro:IPR011991 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0007131 GO:GO:0045003 eggNOG:COG0514
GeneTree:ENSGT00550000074520 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 EMBL:U92536 RefSeq:NP_524319.2
UniGene:Dm.2444 ProteinModelPortal:Q9VGI8 SMR:Q9VGI8 DIP:DIP-23386N
MINT:MINT-784091 STRING:Q9VGI8 PaxDb:Q9VGI8 PRIDE:Q9VGI8
EnsemblMetazoa:FBtr0082434 GeneID:41366 KEGG:dme:Dmel_CG6920
CTD:41366 FlyBase:FBgn0002906 InParanoid:Q9VGI8 OMA:KISSSAR
OrthoDB:EOG4JDFNV PhylomeDB:Q9VGI8 ChiTaRS:BLM GenomeRNAi:41366
NextBio:823498 Bgee:Q9VGI8 GermOnline:CG6920 GO:GO:0000403
GO:GO:0000733 GO:GO:0000731 GO:GO:1901291 GO:GO:0000732
Uniprot:Q9VGI8
Length = 1487
Score = 889 (318.0 bits), Expect = 8.2e-97, Sum P(4) = 8.2e-97
Identities = 180/371 (48%), Positives = 246/371 (66%)
Query: 87 FGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQD 146
FG+ ++R NQ ++INA L G D V+M GGGKSLCYQLPA+L EG+ +V+SPL SLI D
Sbjct: 733 FGLKSFRPNQLQVINATLLGNDCFVLMPTGGGKSLCYQLPAILTEGVTIVISPLKSLIFD 792
Query: 147 QVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEK 206
Q+ LA+L I A L+ D IY+ LE +K+LYVTPEKIS S RF L+
Sbjct: 793 QINKLASLDICAKSLSGEQKMADVMAIYRDLESQPPMVKLLYVTPEKISSSARFQDTLDT 852
Query: 207 CHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLM 266
+ +S IDEAHC SQWGHDFRPDYK LG+LK +FP+VP +ALTATAT +V+ D++
Sbjct: 853 LNSNNYISRFVIDEAHCVSQWGHDFRPDYKKLGVLKKRFPNVPTIALTATATPRVRLDIL 912
Query: 267 EMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRK 326
L+++ C F+S+ NR NL Y V K V +D+I++YI+ S P SGI+YC SRK
Sbjct: 913 AQLNLKNCKWFLSSFNRSNLRYRVLPKKGVS--TLDDISRYIR-SKPQHFSGIIYCLSRK 969
Query: 327 ECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRF 386
EC++ ++++ + G+ A YHA + RE W K++VI TVAFGMGI+KPDVRF
Sbjct: 970 ECDETSKKMCKDGVRAVSYHAGLTDTDRESRQKDWLTGKMRVICATVAFGMGIDKPDVRF 1029
Query: 387 VIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFYENS--------GL 438
V+H+SL KS+E YYQE+GRAGRDG ++C+L++ +D+ R M+ + + +
Sbjct: 1030 VLHYSLPKSIEGYYQEAGRAGRDGDVADCILYYNYSDMLRIKKMLDSDKALQYNVKKIHV 1089
Query: 439 QNLYDIVRYSQ 449
NLY IV Y +
Sbjct: 1090 DNLYRIVGYCE 1100
Score = 57 (25.1 bits), Expect = 8.2e-97, Sum P(4) = 8.2e-97
Identities = 30/116 (25%), Positives = 55/116 (47%)
Query: 560 NTADNKKSTKRSLTSSALEFELDELRKELASISGGILPHSVLSSQLIRLISARKPSTMEE 619
+TAD + S R + LD L + +AS + S+++ Q ++ ++ P T ++
Sbjct: 1274 STADGQ-SGMREIHERCYTDLLD-LCRTIAS-QRNVTMASIMNIQALKSMAETLPITEKD 1330
Query: 620 ASS-NHLEKIIGKLKTGKYGSRILEVISKCGNSEQQHDNNAVSKEEQGRDARASKR 674
S H + K KYG+++LE+ S SE+ + +EE+ A A +R
Sbjct: 1331 MCSIPH----VTKANFDKYGAKLLEITSNYA-SEKLLMQAVLDEEEE--QAAAKQR 1379
Score = 48 (22.0 bits), Expect = 8.2e-97, Sum P(4) = 8.2e-97
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 481 HAQCIISLLQDIQDNNQRLTMLQLVDKMK-IKLKEI 515
HA+ ++D+ R T+L + D +K K+K+I
Sbjct: 1148 HARKAARAVKDLCSGRSRFTLLHIADVLKGSKIKKI 1183
Score = 46 (21.3 bits), Expect = 8.2e-97, Sum P(4) = 8.2e-97
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 1 METEEILQELENVEAEVRLVQEQIK---QLVDRQDQLYERQSELKSLLEAFE 49
M EI N ++++++++ K QLV Q+ L +++S+LK+ EA E
Sbjct: 398 MHFNEIAGFQPNTFLKLKVMRQKFKARTQLV--QNSLDKKESQLKAEQEALE 447
>UNIPROTKB|Q9DEY9 [details] [associations]
symbol:blm "Bloom syndrome protein homolog" species:8355
"Xenopus laevis" [GO:0000729 "DNA double-strand break processing"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF08072 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00490 SMART:SM00956 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006260 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006310 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 HOVERGEN:HBG004850 GO:GO:0000729
CTD:641 EMBL:AF307841 RefSeq:NP_001079095.1 UniGene:Xl.706
ProteinModelPortal:Q9DEY9 GeneID:373628 KEGG:xla:373628
Xenbase:XB-GENE-982565 Uniprot:Q9DEY9
Length = 1364
Score = 847 (303.2 bits), Expect = 5.6e-93, Sum P(4) = 5.6e-93
Identities = 177/372 (47%), Positives = 236/372 (63%)
Query: 87 FGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQD 146
FG+ +R NQ E INA L G D ++M GGGKSLCYQLP + G+ +V+SPL SLI D
Sbjct: 615 FGLHRFRTNQLEAINACLCGEDCFILMPTGGGKSLCYQLPGCISPGVTIVISPLRSLIVD 674
Query: 147 QVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEK 206
QV L +L IPA LT + + IY L K + +K+LYVTPEK+ S R +S +E
Sbjct: 675 QVQKLTSLDIPATYLTGDKTDAEAASIYLQLSKKDPIIKLLYVTPEKVCASTRLISTMEN 734
Query: 207 CHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLM 266
+ L+ IDEAHC SQWGHDFRPDYK L +L+ +F VPMMALTATA +V+ D++
Sbjct: 735 LYERQLLARFVIDEAHCVSQWGHDFRPDYKRLNVLRQKFQSVPMMALTATANPRVKKDIL 794
Query: 267 EMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRK 326
L + K F + NR NL Y V K +V +D + ++I++ +PN +SGI+YC SR
Sbjct: 795 NQLKMTKPQIFTMSFNRDNLKYEVLPKKPK-RVALDCV-EWIKKHHPN-DSGIIYCLSRH 851
Query: 327 ECEQVAQELRQRGISADYYHADMDINAREKVHMRW-SKNKLQVIVGTVAFGMGINKPDVR 385
EC+ +A L++ G++A YHA + + R+ V +W +++ QVI T+AFGMGI+KPDVR
Sbjct: 852 ECDTMADTLQKEGLAALAYHAGLADSNRDYVQHKWINQDDCQVICATIAFGMGIDKPDVR 911
Query: 386 FVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFYENSG-------- 437
+VIH SL KSVE YYQESGRAGRDG S CLLF+ DV R ++ E G
Sbjct: 912 YVIHASLPKSVEGYYQESGRAGRDGETSHCLLFYSYHDVTRIRRLIQMEKDGNSHTKQTH 971
Query: 438 LQNLYDIVRYSQ 449
NLY +V Y +
Sbjct: 972 FNNLYSMVHYCE 983
Score = 58 (25.5 bits), Expect = 5.6e-93, Sum P(4) = 5.6e-93
Identities = 29/96 (30%), Positives = 45/96 (46%)
Query: 555 SSVQKNTADNKKST-KRSLTSSALEFELDELRKELASISGGILPHSVLSSQLIRLISARK 613
SS++K A +T +R + EL EL K L I G + ++ ++ IR I A
Sbjct: 1147 SSIRKQKASVVTNTSQREEMVKKCQAELTELCKRLGKIFG-VHYFNIFNTATIRRI-AES 1204
Query: 614 PSTMEEASSNHLEKIIGKL--KTGKYGSRILEVISK 647
S E L +I G K KYG+ +++V+ K
Sbjct: 1205 LSPEPEV----LLQIDGVTEDKLDKYGAELIDVLQK 1236
Score = 50 (22.7 bits), Expect = 5.6e-93, Sum P(4) = 5.6e-93
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 493 QDNNQRLTMLQLVDK-MKIKLKEIDSDL-------KREEIEQLVLQLIIDRVL 537
+ NN RLT+ +VD + K +I + L R E+L +L++DR++
Sbjct: 1054 RSNNTRLTLNMMVDIFLGSKSAKIQTGLFGKGAAYSRHNAERLFRKLVLDRII 1106
Score = 44 (20.5 bits), Expect = 5.6e-93, Sum P(4) = 5.6e-93
Identities = 14/55 (25%), Positives = 25/55 (45%)
Query: 23 QIKQLVDRQDQLYERQSELKSLLEAFEASRGSPIQYGGSSSTAVENWSGTFEWDS 77
Q Q+V +D ++ S K AS+ + I S T++E W ++D+
Sbjct: 97 QPPQVVALKDHVHGNDSANKPPSTEDAASKKTGINTSFGSVTSLEEWDDLDDFDT 151
Score = 37 (18.1 bits), Expect = 8.8e-91, Sum P(4) = 8.8e-91
Identities = 15/48 (31%), Positives = 17/48 (35%)
Query: 630 GKLKTGKYGSRILEVISKCGNSEQQHDNNAVSKEEQ---GRDARASKR 674
GK K K G + SK GNS N+ G A KR
Sbjct: 1294 GKSKKRKTGGDGQQSRSKNGNSSYARKNSTAKTSSSYISGSKTGADKR 1341
>UNIPROTKB|E1BQ04 [details] [associations]
symbol:BLM "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
[GO:0051782 "negative regulation of cell division" evidence=IEA]
[GO:0051259 "protein oligomerization" evidence=IEA] [GO:0051098
"regulation of binding" evidence=IEA] [GO:0046641 "positive
regulation of alpha-beta T cell proliferation" evidence=IEA]
[GO:0046632 "alpha-beta T cell differentiation" evidence=IEA]
[GO:0045950 "negative regulation of mitotic recombination"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0045120 "pronucleus" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0031297 "replication fork processing"
evidence=IEA] [GO:0016605 "PML body" evidence=IEA] [GO:0016363
"nuclear matrix" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0009378 "four-way junction helicase activity"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005657 "replication fork"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0002039 "p53
binding" evidence=IEA] [GO:0001673 "male germ cell nucleus"
evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
[GO:0000781 "chromosome, telomeric region" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IEA] [GO:0000405
"bubble DNA binding" evidence=IEA] [GO:0000079 "regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012532 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0051259 GO:GO:0005524 GO:GO:0005737
GO:GO:0045893 GO:GO:0000079 GO:GO:0005730 GO:GO:0016605
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
GO:GO:0001673 GO:GO:0003697 GO:GO:0016363 GO:GO:0046632
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0000781 GO:GO:0000723 GO:GO:0005657
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000733 OMA:NANDQAI GO:GO:0000800
GO:GO:0045120 GO:GO:0000405 GO:GO:0009378 GO:GO:0051880
GO:GO:0051782 GO:GO:0045950 GO:GO:0046641 GO:GO:0051098
GO:GO:0031297 EMBL:DAAA02052171 IPI:IPI01003766
Ensembl:ENSBTAT00000027057 Uniprot:E1BQ04
Length = 1417
Score = 868 (310.6 bits), Expect = 2.5e-90, Sum P(3) = 2.5e-90
Identities = 181/372 (48%), Positives = 240/372 (64%)
Query: 87 FGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQD 146
FG+ +R NQ E INA L G D ++M GGGKSLCYQLPA + G+ +V+SPL SLI D
Sbjct: 663 FGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVISPLRSLIVD 722
Query: 147 QVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEK 206
QV L +L IPA LT + + IY L K + +K+LYVTPEK+ S R +S LE
Sbjct: 723 QVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEKVCASNRLISTLEN 782
Query: 207 CHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLM 266
+ L+ IDEAHC SQWGHDFRPDYK + IL+ +FP VP+MALTATA +VQ D++
Sbjct: 783 LYERKLLARFVIDEAHCVSQWGHDFRPDYKRMNILRQKFPSVPVMALTATANPRVQKDIL 842
Query: 267 EMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRK 326
L I + F + NR NL Y V K KV D + ++I++ +P+ +SGI+YC SR+
Sbjct: 843 TQLKILRPQVFSMSFNRHNLKYYVLPKKPK-KVAFDCL-EWIRKHHPH-DSGIIYCLSRR 899
Query: 327 ECEQVAQELRQRGISADYYHADMDINAREKVHMRW-SKNKLQVIVGTVAFGMGINKPDVR 385
EC+ +A+ L+ G++A YHA + +AR++V +W +++ QVI T+AFGMGI+KPDVR
Sbjct: 900 ECDTMAETLQNDGLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAFGMGIDKPDVR 959
Query: 386 FVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFYENSG-------- 437
FVIH SL KSVE YYQESGRAGRDG S C+LF+ DV R ++ E G
Sbjct: 960 FVIHASLPKSVEGYYQESGRAGRDGEISHCILFYTYHDVTRLKRLILMEKDGNRHTRETH 1019
Query: 438 LQNLYDIVRYSQ 449
NLY +V Y +
Sbjct: 1020 FNNLYSMVHYCE 1031
Score = 47 (21.6 bits), Expect = 2.5e-90, Sum P(3) = 2.5e-90
Identities = 28/128 (21%), Positives = 51/128 (39%)
Query: 555 SSVQKNTADNKKSTKRSLTSSALEFELDELRKELASISGGILPHSVLSSQLIRLISARKP 614
SSV+K A K ++R EL E+ K L + G V + ++ +K
Sbjct: 1196 SSVKKQKALVAKVSQREEVVKKCLGELTEVCKSLGKVFG------VHYFNIFNTVTLKKL 1249
Query: 615 STMEEASSNHLEKIIGKL--KTGKYGSRILEVISKCGNSEQQHDNNAVSKEEQGRDARAS 672
+ + L +I G K KYG+ ++ ++ K SE S +R +
Sbjct: 1250 AESLSSDPEVLLQIDGVTEDKLEKYGAEVIPILQKY--SEWTLPAEDTSPRRSPSSSRGT 1307
Query: 673 KRTKKEKA 680
++ E++
Sbjct: 1308 RKNTPEES 1315
Score = 43 (20.2 bits), Expect = 2.5e-90, Sum P(3) = 2.5e-90
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 498 RLTMLQLVDK-MKIKLKEIDSDL-------KREEIEQLVLQLIIDRVL 537
R TM LVD + K +I S + R E+L +LI+DR+L
Sbjct: 1108 RFTMNMLVDIFLGSKSAKIQSGIFGKGSTYSRHNAERLFKKLILDRIL 1155
>MGI|MGI:1328362 [details] [associations]
symbol:Blm "Bloom syndrome, RecQ helicase-like"
species:10090 "Mus musculus" [GO:0000079 "regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=ISO] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000405 "bubble DNA binding" evidence=ISO] [GO:0000723
"telomere maintenance" evidence=IGI] [GO:0000729 "DNA double-strand
break processing" evidence=ISO] [GO:0000733 "DNA strand
renaturation" evidence=ISO] [GO:0000800 "lateral element"
evidence=ISO] [GO:0001673 "male germ cell nucleus" evidence=IDA]
[GO:0002039 "p53 binding" evidence=ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=ISO] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=ISO] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005657
"replication fork" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006200
"ATP catabolic process" evidence=ISO;IDA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IDA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISO] [GO:0009378 "four-way junction
helicase activity" evidence=ISO] [GO:0010165 "response to X-ray"
evidence=ISO] [GO:0016363 "nuclear matrix" evidence=ISO]
[GO:0016605 "PML body" evidence=ISO] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0031297
"replication fork processing" evidence=ISO] [GO:0036310 "annealing
helicase activity" evidence=ISO] [GO:0043140 "ATP-dependent 3'-5'
DNA helicase activity" evidence=IDA] [GO:0044237 "cellular
metabolic process" evidence=IEA] [GO:0045120 "pronucleus"
evidence=IDA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0045910 "negative regulation of
DNA recombination" evidence=ISO] [GO:0045950 "negative regulation
of mitotic recombination" evidence=IMP] [GO:0046632 "alpha-beta T
cell differentiation" evidence=IMP] [GO:0046641 "positive
regulation of alpha-beta T cell proliferation" evidence=IMP]
[GO:0051098 "regulation of binding" evidence=IDA] [GO:0051259
"protein oligomerization" evidence=ISO] [GO:0051276 "chromosome
organization" evidence=IMP] [GO:0051782 "negative regulation of
cell division" evidence=ISO] [GO:0051880 "G-quadruplex DNA binding"
evidence=ISO] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF08072 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00490 SMART:SM00956 MGI:MGI:1328362 GO:GO:0005524
GO:GO:0005737 GO:GO:0005654 GO:GO:0003677 GO:GO:0006260
Gene3D:1.10.10.10 InterPro:IPR011991 Reactome:REACT_120463
GO:GO:0006310 GO:GO:0001673 GO:GO:0046632 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723
Reactome:REACT_27235 GO:GO:0005657 eggNOG:COG0514
GeneTree:ENSGT00550000074520 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 HOGENOM:HOG000095239
HOVERGEN:HBG004850 OrthoDB:EOG4640B3 GO:GO:0000729 ChiTaRS:BLM
CTD:641 GO:GO:0045120 GO:GO:0045950 GO:GO:0046641 GO:GO:0051098
EMBL:Z98263 EMBL:AB008674 IPI:IPI00329943 RefSeq:NP_001035992.1
RefSeq:NP_031576.4 UniGene:Mm.12932 ProteinModelPortal:O88700
SMR:O88700 DIP:DIP-27643N STRING:O88700 PhosphoSite:O88700
PRIDE:O88700 DNASU:12144 Ensembl:ENSMUST00000081314 GeneID:12144
KEGG:mmu:12144 UCSC:uc009iaw.2 InParanoid:O88700 NextBio:280473
Bgee:O88700 CleanEx:MM_BLM Genevestigator:O88700
GermOnline:ENSMUSG00000030528 Uniprot:O88700
Length = 1416
Score = 849 (303.9 bits), Expect = 1.8e-89, Sum P(4) = 1.8e-89
Identities = 177/372 (47%), Positives = 238/372 (63%)
Query: 87 FGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQD 146
FG+ +R NQ E INA L G D ++M GGGKSLCYQLPA + G+ +V+SPL SLI D
Sbjct: 671 FGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVISPLRSLIVD 730
Query: 147 QVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEK 206
QV L + IPA LT + + IY L K + +K+LYVTPEK+ S R +S LE
Sbjct: 731 QVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYVTPEKVCASNRLISTLEN 790
Query: 207 CHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLM 266
+ L+ IDEAHC SQWGHDFR DYK + +L+ +FP VP+MALTATA +VQ D++
Sbjct: 791 LYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDIL 850
Query: 267 EMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRK 326
L I + F + NR NL Y V K KV D + ++I++ +P +SGI+YC SR+
Sbjct: 851 TQLKILRPQVFSMSFNRHNLKYYVLPKKPK-KVAFDCL-EWIRKHHPY-DSGIIYCLSRR 907
Query: 327 ECEQVAQELRQRGISADYYHADMDINAREKVHMRW-SKNKLQVIVGTVAFGMGINKPDVR 385
EC+ +A L++ G++A YHA + +AR++V +W +++ QVI T+AFGMGI+KPDVR
Sbjct: 908 ECDTMADTLQREGLAALAYHAGLSDSARDEVQHKWINQDNCQVICATIAFGMGIDKPDVR 967
Query: 386 FVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFYENSG-------- 437
FVIH SL KS+E YYQESGRAGRDG S C+LF+ DV R ++ E G
Sbjct: 968 FVIHASLPKSMEGYYQESGRAGRDGEISHCVLFYTYHDVTRLKRLIMMEKDGNYHTKETH 1027
Query: 438 LQNLYDIVRYSQ 449
+ NLY +V Y +
Sbjct: 1028 VNNLYSMVHYCE 1039
Score = 42 (19.8 bits), Expect = 1.8e-89, Sum P(4) = 1.8e-89
Identities = 20/93 (21%), Positives = 42/93 (45%)
Query: 555 SSVQKNTADNKKSTKRSLTSSALEFELDELRKELASISGGILPHSVLSSQLIRLISARKP 614
SS++K A K ++R EL E+ K L + G + ++ ++ ++ ++
Sbjct: 1201 SSIKKQKALVAKVSQREEVVKKCLGELTEVCKLLGKVFG-VHYFNIFNTATLKKLAESLS 1259
Query: 615 STMEEASSNHLEKIIGKLKTGKYGSRILEVISK 647
S E ++ + K KYG+ ++ V+ K
Sbjct: 1260 SDPEVLLQ--IDGVTED-KLEKYGAEVIPVLQK 1289
Score = 41 (19.5 bits), Expect = 1.8e-89, Sum P(4) = 1.8e-89
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 61 SSSTAVENWSGTFEWDSRADDVRLNVFGIPAYRAN 95
SS+ ++ +W+ ++D A D ++ PA R +
Sbjct: 143 SSADSLSDWADMDDFDMSASDAFASLAKNPATRVS 177
Score = 37 (18.1 bits), Expect = 1.8e-89, Sum P(4) = 1.8e-89
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 521 REEIEQLVLQLIIDRVL 537
R E+L +LI+D++L
Sbjct: 1144 RHNAERLFKKLILDKIL 1160
>ASPGD|ASPL0000045206 [details] [associations]
symbol:musN species:162425 "Emericella nidulans"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0006281 "DNA repair" evidence=IMP] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00490 SMART:SM00956 GO:GO:0005524 GO:GO:0006260
EMBL:BN001307 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0005622 GO:GO:0006310 EMBL:AACD01000032
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
KO:K10901 Gene3D:1.10.150.80 TIGRFAMs:TIGR00614 RefSeq:XP_659691.1
ProteinModelPortal:G5EB35 EnsemblFungi:CADANIAT00008758
GeneID:2875310 KEGG:ani:AN2087.2 HOGENOM:HOG000182791 OMA:EERQWIM
Uniprot:G5EB35
Length = 1534
Score = 865 (309.6 bits), Expect = 3.5e-89, Sum P(3) = 3.5e-89
Identities = 183/396 (46%), Positives = 244/396 (61%)
Query: 69 WSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAV 128
W G W F + +R NQ E I++ LSG+D V+M GGGKSLCYQLP+V
Sbjct: 679 W-GQHPWTKDVKIALKERFHLRGFRPNQLEAIDSTLSGKDTFVLMPTGGGKSLCYQLPSV 737
Query: 129 LREG----IALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGE- 183
+ G + LV+SPLLSL+QDQV L I A+++ T E+ ++I L E
Sbjct: 738 ISSGSTRGVTLVISPLLSLMQDQVSHLRQNKIKAYLINGDTPSEERQWIMSTLSSHNPET 797
Query: 184 -LKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILK 242
+++LY+TPE ISKS ++EK +L+ + IDEAHC SQWGHDFRPDYK +G +
Sbjct: 798 HIELLYITPEMISKSHALTDRIEKLCSIQKLARVVIDEAHCVSQWGHDFRPDYKQIGAFR 857
Query: 243 TQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVID 302
+ P VP+MALTATAT+ V+ D++ L ++ C F + NRPNL Y VR K ++ +D
Sbjct: 858 ARIPGVPLMALTATATENVKVDVIHNLRMQGCEVFTQSFNRPNLTYEVRRKGKHAEL-LD 916
Query: 303 EIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQR-GISADYYHADMDINAREKVHMRW 361
IA I+ +Y N + GIVYC SR CE+VA+ LR I A++YHA +D R + RW
Sbjct: 917 SIADTIKSTYRN-KCGIVYCLSRNTCEKVAEALRTNYSIKAEHYHAGLDAETRARTQQRW 975
Query: 362 SKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRP 421
+ VIV T+AFGMGI+KPDVRFVIHHS+ KS+E YYQE+GRAGRDG S C L+F
Sbjct: 976 QAGDVHVIVATIAFGMGIDKPDVRFVIHHSIPKSLEGYYQETGRAGRDGRRSGCYLYFSH 1035
Query: 422 ADVPRQSSMVFY-ENS-----GLQN--LYDIVRYSQ 449
DV SM+ E+S G Q L D+V+Y +
Sbjct: 1036 RDVSTMQSMIEKNEDSDDVQKGRQTRMLNDVVKYCE 1071
Score = 48 (22.0 bits), Expect = 3.5e-89, Sum P(3) = 3.5e-89
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 481 HAQCIISLLQDIQDNNQRLTMLQLVDKMKIKLKEIDSDLKRE 522
HA I +++ Q+ N+R T+ V+ + K S RE
Sbjct: 1115 HASAAIKIVRYFQERNERATLSYCVNIFRGTTKSFRSPEHRE 1156
Score = 39 (18.8 bits), Expect = 3.5e-89, Sum P(3) = 3.5e-89
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 14 EAEVRLVQEQIKQLVDR--QDQL--YERQSELKSLLEAFEAS 51
EAE + +++ I +++ D L E+Q EL S L+ EA+
Sbjct: 457 EAESKALKDVIMHALNQGTSDVLPKIEQQKELTSQLKDMEAN 498
>UNIPROTKB|P54132 [details] [associations]
symbol:BLM "Bloom syndrome protein" species:9606 "Homo
sapiens" [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0001673 "male germ cell nucleus" evidence=IEA] [GO:0005657
"replication fork" evidence=IEA] [GO:0043140 "ATP-dependent 3'-5'
DNA helicase activity" evidence=IEA] [GO:0045120 "pronucleus"
evidence=IEA] [GO:0045950 "negative regulation of mitotic
recombination" evidence=IEA] [GO:0046632 "alpha-beta T cell
differentiation" evidence=IEA] [GO:0046641 "positive regulation of
alpha-beta T cell proliferation" evidence=IEA] [GO:0051098
"regulation of binding" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0031297
"replication fork processing" evidence=IDA] [GO:0000781
"chromosome, telomeric region" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0016605 "PML body" evidence=IDA]
[GO:0048478 "replication fork protection" evidence=NAS] [GO:0000800
"lateral element" evidence=IDA] [GO:0006310 "DNA recombination"
evidence=NAS] [GO:0051259 "protein oligomerization" evidence=IDA]
[GO:0003697 "single-stranded DNA binding" evidence=IDA] [GO:0006974
"response to DNA damage stimulus" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IDA] [GO:0009378
"four-way junction helicase activity" evidence=IDA] [GO:0000405
"bubble DNA binding" evidence=IDA] [GO:0051880 "G-quadruplex DNA
binding" evidence=IDA] [GO:0002039 "p53 binding" evidence=IPI]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0051782 "negative regulation of cell division"
evidence=IMP] [GO:0000085 "G2 phase of mitotic cell cycle"
evidence=NAS] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=NAS] [GO:0010165 "response to
X-ray" evidence=IDA] [GO:0016363 "nuclear matrix" evidence=IDA]
[GO:0031572 "G2 DNA damage checkpoint" evidence=NAS] [GO:0004386
"helicase activity" evidence=IDA] [GO:0045910 "negative regulation
of DNA recombination" evidence=IMP] [GO:0006281 "DNA repair"
evidence=NAS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IMP;IDA] [GO:0036310 "annealing helicase activity"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0000079 "regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=IMP] [GO:0000729 "DNA double-strand break processing"
evidence=IDA] [GO:0000733 "DNA strand renaturation" evidence=IDA]
[GO:0006200 "ATP catabolic process" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF08072 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00490 SMART:SM00956 GO:GO:0051259 GO:GO:0005524
GO:GO:0005737 Pathway_Interaction_DB:telomerasepathway
GO:GO:0045893 GO:GO:0000079 GO:GO:0005730 GO:GO:0016605
GO:GO:0000085 Gene3D:1.10.10.10 InterPro:IPR011991
Reactome:REACT_111183 GO:GO:0001673 GO:GO:0003697 GO:GO:0004003
GO:GO:0000724 GO:GO:0016363 GO:GO:0046632 GO:GO:0010165
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GO:GO:0000723 GO:GO:0031572 GO:GO:0005657 eggNOG:COG0514 KO:K10901
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
HOGENOM:HOG000095239 HOVERGEN:HBG004850 OrthoDB:EOG4640B3
GO:GO:0000729 EMBL:U39817 EMBL:AY886902 EMBL:BC093622 EMBL:BC101567
EMBL:BC115030 EMBL:BC115032 IPI:IPI00004859 PIR:A57570
RefSeq:NP_000048.1 UniGene:Hs.725208 PDB:2KV2 PDB:2RRD PDBsum:2KV2
PDBsum:2RRD ProteinModelPortal:P54132 SMR:P54132 DIP:DIP-33322N
IntAct:P54132 MINT:MINT-131918 STRING:P54132 PhosphoSite:P54132
DMDM:1705486 PaxDb:P54132 PRIDE:P54132 Ensembl:ENST00000355112
GeneID:641 KEGG:hsa:641 UCSC:uc002bpr.3 CTD:641
GeneCards:GC15P091260 HGNC:HGNC:1058 HPA:HPA005689 MIM:210900
MIM:604610 neXtProt:NX_P54132 Orphanet:125 PharmGKB:PA25369
InParanoid:P54132 OMA:NANDQAI ChEMBL:CHEMBL1293237
EvolutionaryTrace:P54132 GenomeRNAi:641 NextBio:2600
PMAP-CutDB:P54132 ArrayExpress:P54132 Bgee:P54132 CleanEx:HS_BLM
Genevestigator:P54132 GermOnline:ENSG00000197299 GO:GO:0000800
GO:GO:0045120 GO:GO:0036310 GO:GO:0000405 GO:GO:0009378
GO:GO:0051880 GO:GO:0051782 GO:GO:0045910 GO:GO:0045950
GO:GO:0046641 GO:GO:0051098 GO:GO:0031297 GO:GO:0048478
Uniprot:P54132
Length = 1417
Score = 856 (306.4 bits), Expect = 8.8e-89, Sum P(3) = 8.8e-89
Identities = 181/372 (48%), Positives = 238/372 (63%)
Query: 87 FGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQD 146
FG+ +R NQ E INA L G D ++M GGGKSLCYQLPA + G+ +V+SPL SLI D
Sbjct: 663 FGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTVVISPLRSLIVD 722
Query: 147 QVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEK 206
QV L +L IPA LT + + IY L K + +K+LYVTPEKI S R +S LE
Sbjct: 723 QVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEKICASNRLISTLEN 782
Query: 207 CHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLM 266
+ L+ IDEAHC SQWGHDFR DYK + +L+ +FP VP+MALTATA +VQ D++
Sbjct: 783 LYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDIL 842
Query: 267 EMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRK 326
L I + F + NR NL Y V K KV D + ++I++ +P +SGI+YC SR+
Sbjct: 843 TQLKILRPQVFSMSFNRHNLKYYVLPKKPK-KVAFDCL-EWIRKHHPY-DSGIIYCLSRR 899
Query: 327 ECEQVAQELRQRGISADYYHADMDINAREKVHMRW-SKNKLQVIVGTVAFGMGINKPDVR 385
EC+ +A L++ G++A YHA + +AR++V +W +++ QVI T+AFGMGI+KPDVR
Sbjct: 900 ECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAFGMGIDKPDVR 959
Query: 386 FVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFYENSG-------- 437
FVIH SL KSVE YYQESGRAGRDG S CLLF+ DV R ++ E G
Sbjct: 960 FVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEKDGNHHTRETH 1019
Query: 438 LQNLYDIVRYSQ 449
NLY +V Y +
Sbjct: 1020 FNNLYSMVHYCE 1031
Score = 49 (22.3 bits), Expect = 8.8e-89, Sum P(3) = 8.8e-89
Identities = 36/159 (22%), Positives = 66/159 (41%)
Query: 495 NNQRLTMLQLVDKMKIKLKEIDSDLKREEIEQLVLQLIIDRVLVRIGPFSPGKKIIKLEI 554
N +RL ++DK+ +D DL +Q + +++ + + K+ +E
Sbjct: 1141 NAERLFKKLILDKI------LDEDLYINANDQAIAYVMLGNKAQTV--LNGNLKVDFMET 1192
Query: 555 ---SSVQKNTA-DNKKSTKRSLTSSALEFELDELRKELASISGGILPHSVLSSQLIRLIS 610
SSV+K A K S + + L EL E+ K L + G V + ++
Sbjct: 1193 ENSSSVKKQKALVAKVSQREEMVKKCLG-ELTEVCKSLGKVFG------VHYFNIFNTVT 1245
Query: 611 ARKPSTMEEASSNHLEKIIGKL--KTGKYGSRILEVISK 647
+K + + L +I G K KYG+ ++ V+ K
Sbjct: 1246 LKKLAESLSSDPEVLLQIDGVTEDKLEKYGAEVISVLQK 1284
Score = 43 (20.2 bits), Expect = 3.7e-88, Sum P(3) = 3.7e-88
Identities = 22/104 (21%), Positives = 46/104 (44%)
Query: 546 GKKIIKLEISSVQKNTADNKKSTKRSLTSSALEFELDELRKELASISGGILPHSVLSSQL 605
G K K++ K +A ++ + +R L+ LDE + + + + +L ++
Sbjct: 1120 GSKSAKIQSGIFGKGSAYSRHNAERLFKKLILDKILDE--DLYINANDQAIAYVMLGNKA 1177
Query: 606 IRLISAR-KPSTMEEASSNHLEKIIGKLKTGKYGSRILEVISKC 648
+++ K ME +S+ ++K K K R E++ KC
Sbjct: 1178 QTVLNGNLKVDFMETENSSSVKK--QKALVAKVSQRE-EMVKKC 1218
Score = 40 (19.1 bits), Expect = 7.7e-88, Sum P(3) = 7.7e-88
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 498 RLTMLQLVDK-MKIKLKEIDSDL-------KREEIEQLVLQLIIDRVL 537
R TM LVD + K +I S + R E+L +LI+D++L
Sbjct: 1108 RFTMNMLVDIFLGSKSAKIQSGIFGKGSAYSRHNAERLFKKLILDKIL 1155
Score = 39 (18.8 bits), Expect = 8.8e-89, Sum P(3) = 8.8e-89
Identities = 11/74 (14%), Positives = 35/74 (47%)
Query: 4 EEILQELENVEAEVRLVQEQIKQLVDRQDQLYERQSELKSLLEAFEASRGSPIQYGGSSS 63
++++ +E++ + + + +L+D ++L ++++ + LL + ++ G
Sbjct: 370 QQLIHVMEHICKLIDTIPDDKLKLLDCGNELLQQRNIRRKLLTEVDFNKSDASLLGSLWR 429
Query: 64 TAVENWSGTFEWDS 77
++ G E DS
Sbjct: 430 YRPDSLDGPMEGDS 443
>UNIPROTKB|H0YNU5 [details] [associations]
symbol:BLM "Bloom syndrome protein" species:9606 "Homo
sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
TIGRFAMs:TIGR00614 HGNC:HGNC:1058 EMBL:AC021422 EMBL:AC124248
ProteinModelPortal:H0YNU5 SMR:H0YNU5 Ensembl:ENST00000560509
Bgee:H0YNU5 Uniprot:H0YNU5
Length = 1286
Score = 856 (306.4 bits), Expect = 1.9e-88, Sum P(3) = 1.9e-88
Identities = 181/372 (48%), Positives = 238/372 (63%)
Query: 87 FGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQD 146
FG+ +R NQ E INA L G D ++M GGGKSLCYQLPA + G+ +V+SPL SLI D
Sbjct: 663 FGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTVVISPLRSLIVD 722
Query: 147 QVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEK 206
QV L +L IPA LT + + IY L K + +K+LYVTPEKI S R +S LE
Sbjct: 723 QVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEKICASNRLISTLEN 782
Query: 207 CHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLM 266
+ L+ IDEAHC SQWGHDFR DYK + +L+ +FP VP+MALTATA +VQ D++
Sbjct: 783 LYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDIL 842
Query: 267 EMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRK 326
L I + F + NR NL Y V K KV D + ++I++ +P +SGI+YC SR+
Sbjct: 843 TQLKILRPQVFSMSFNRHNLKYYVLPKKPK-KVAFDCL-EWIRKHHPY-DSGIIYCLSRR 899
Query: 327 ECEQVAQELRQRGISADYYHADMDINAREKVHMRW-SKNKLQVIVGTVAFGMGINKPDVR 385
EC+ +A L++ G++A YHA + +AR++V +W +++ QVI T+AFGMGI+KPDVR
Sbjct: 900 ECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAFGMGIDKPDVR 959
Query: 386 FVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFYENSG-------- 437
FVIH SL KSVE YYQESGRAGRDG S CLLF+ DV R ++ E G
Sbjct: 960 FVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEKDGNHHTRETH 1019
Query: 438 LQNLYDIVRYSQ 449
NLY +V Y +
Sbjct: 1020 FNNLYSMVHYCE 1031
Score = 39 (18.8 bits), Expect = 1.9e-88, Sum P(3) = 1.9e-88
Identities = 11/74 (14%), Positives = 35/74 (47%)
Query: 4 EEILQELENVEAEVRLVQEQIKQLVDRQDQLYERQSELKSLLEAFEASRGSPIQYGGSSS 63
++++ +E++ + + + +L+D ++L ++++ + LL + ++ G
Sbjct: 370 QQLIHVMEHICKLIDTIPDDKLKLLDCGNELLQQRNIRRKLLTEVDFNKSDASLLGSLWR 429
Query: 64 TAVENWSGTFEWDS 77
++ G E DS
Sbjct: 430 YRPDSLDGPMEGDS 443
Score = 37 (18.1 bits), Expect = 1.9e-88, Sum P(3) = 1.9e-88
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 633 KTGKYGSRILEVISK 647
K KYG+ ++ V+ K
Sbjct: 1139 KLEKYGAEVISVLQK 1153
>UNIPROTKB|E2RS76 [details] [associations]
symbol:BLM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051880 "G-quadruplex DNA binding"
evidence=IEA] [GO:0051782 "negative regulation of cell division"
evidence=IEA] [GO:0051259 "protein oligomerization" evidence=IEA]
[GO:0051098 "regulation of binding" evidence=IEA] [GO:0046641
"positive regulation of alpha-beta T cell proliferation"
evidence=IEA] [GO:0046632 "alpha-beta T cell differentiation"
evidence=IEA] [GO:0045950 "negative regulation of mitotic
recombination" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045120
"pronucleus" evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA
helicase activity" evidence=IEA] [GO:0031297 "replication fork
processing" evidence=IEA] [GO:0016605 "PML body" evidence=IEA]
[GO:0016363 "nuclear matrix" evidence=IEA] [GO:0010165 "response to
X-ray" evidence=IEA] [GO:0009378 "four-way junction helicase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005657 "replication
fork" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0002039
"p53 binding" evidence=IEA] [GO:0001673 "male germ cell nucleus"
evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
[GO:0000781 "chromosome, telomeric region" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IEA] [GO:0000405
"bubble DNA binding" evidence=IEA] [GO:0000079 "regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012532 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0051259 GO:GO:0005524 GO:GO:0005737
GO:GO:0045893 GO:GO:0000079 GO:GO:0005730 GO:GO:0016605
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
GO:GO:0001673 GO:GO:0003697 GO:GO:0016363 GO:GO:0046632
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0000781 GO:GO:0000723 GO:GO:0005657
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000733 GO:GO:0000800 GO:GO:0045120
GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0051782
GO:GO:0045950 GO:GO:0046641 GO:GO:0051098 GO:GO:0031297
EMBL:AAEX03002333 Ensembl:ENSCAFT00000019677 Uniprot:E2RS76
Length = 1407
Score = 857 (306.7 bits), Expect = 2.0e-88, Sum P(3) = 2.0e-88
Identities = 180/372 (48%), Positives = 239/372 (64%)
Query: 87 FGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQD 146
FG+ +R NQ E INA L G D ++M GGGKSLCYQLPA + G+ +V+SPL SLI D
Sbjct: 652 FGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVISPLRSLIVD 711
Query: 147 QVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEK 206
QV L +L IPA LT + + IY L K + +K+LYVTPEK+ S R +S LE
Sbjct: 712 QVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEKVCASNRLLSTLEN 771
Query: 207 CHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLM 266
+ L+ IDEAHC SQWGHDFR DYK + +L+ +FP VP+MALTATA +VQ D++
Sbjct: 772 LYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDIL 831
Query: 267 EMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRK 326
L I + F + NR NL Y V K KV D + ++I++ +P+ +SGI+YC SR+
Sbjct: 832 TQLKILQPQVFSMSFNRHNLKYYVLPKKPK-KVAFDCL-EWIRKYHPH-DSGIIYCLSRR 888
Query: 327 ECEQVAQELRQRGISADYYHADMDINAREKVHMRW-SKNKLQVIVGTVAFGMGINKPDVR 385
EC+ +A L++ G++A YHA + +AR++V +W +++ QVI T+AFGMGI+KPDVR
Sbjct: 889 ECDTMADTLQKDGLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAFGMGIDKPDVR 948
Query: 386 FVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFYENSG-------- 437
FVIH SL KSVE YYQESGRAGRDG S CLLF+ DV R ++ E G
Sbjct: 949 FVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLILMEKDGNRHTRETH 1008
Query: 438 LQNLYDIVRYSQ 449
NLY +V Y +
Sbjct: 1009 FNNLYSMVHYCE 1020
Score = 43 (20.2 bits), Expect = 2.0e-88, Sum P(3) = 2.0e-88
Identities = 26/124 (20%), Positives = 49/124 (39%)
Query: 558 QKNTADNKKSTKRSLTSSALEFELDELRKELASISGGILPHSVLSSQLIRLISARKPSTM 617
QK K S + + L EL E+ K L + G V + ++ +K +
Sbjct: 1190 QKAALVAKMSQREEVVKKCLG-ELTEVCKSLGKVFG------VHYFNIFNTVTLKKLAES 1242
Query: 618 EEASSNHLEKIIGKL--KTGKYGSRILEVISKCGNSEQQHDNNAVSKEEQGRDARASKRT 675
+ L +I G K KYG+ ++ ++ K D+ S +R+++R+
Sbjct: 1243 LSSDPEVLLQIDGVTEDKLEKYGAEVIPILQKYSEWTLPADDG--SPRISPSSSRSTRRS 1300
Query: 676 KKEK 679
E+
Sbjct: 1301 APEE 1304
Score = 40 (19.1 bits), Expect = 2.0e-88, Sum P(3) = 2.0e-88
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 498 RLTMLQLVDK-MKIKLKEIDSDL-------KREEIEQLVLQLIIDRVL 537
R TM LVD + K +I S + R E+L +LI+D++L
Sbjct: 1097 RFTMNMLVDIFLGSKSAKIQSGIFGQGSTYSRHNAERLFKKLILDKIL 1144
>UNIPROTKB|J9PB86 [details] [associations]
symbol:BLM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012532
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 CTD:641 OMA:NANDQAI
EMBL:AAEX03002333 RefSeq:XP_003434427.1 Ensembl:ENSCAFT00000042800
GeneID:100685609 KEGG:cfa:100685609 Uniprot:J9PB86
Length = 1420
Score = 857 (306.7 bits), Expect = 2.4e-88, Sum P(3) = 2.4e-88
Identities = 180/372 (48%), Positives = 239/372 (64%)
Query: 87 FGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQD 146
FG+ +R NQ E INA L G D ++M GGGKSLCYQLPA + G+ +V+SPL SLI D
Sbjct: 665 FGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVISPLRSLIVD 724
Query: 147 QVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEK 206
QV L +L IPA LT + + IY L K + +K+LYVTPEK+ S R +S LE
Sbjct: 725 QVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEKVCASNRLLSTLEN 784
Query: 207 CHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLM 266
+ L+ IDEAHC SQWGHDFR DYK + +L+ +FP VP+MALTATA +VQ D++
Sbjct: 785 LYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDIL 844
Query: 267 EMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRK 326
L I + F + NR NL Y V K KV D + ++I++ +P+ +SGI+YC SR+
Sbjct: 845 TQLKILQPQVFSMSFNRHNLKYYVLPKKPK-KVAFDCL-EWIRKYHPH-DSGIIYCLSRR 901
Query: 327 ECEQVAQELRQRGISADYYHADMDINAREKVHMRW-SKNKLQVIVGTVAFGMGINKPDVR 385
EC+ +A L++ G++A YHA + +AR++V +W +++ QVI T+AFGMGI+KPDVR
Sbjct: 902 ECDTMADTLQKDGLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAFGMGIDKPDVR 961
Query: 386 FVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFYENSG-------- 437
FVIH SL KSVE YYQESGRAGRDG S CLLF+ DV R ++ E G
Sbjct: 962 FVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLILMEKDGNRHTRETH 1021
Query: 438 LQNLYDIVRYSQ 449
NLY +V Y +
Sbjct: 1022 FNNLYSMVHYCE 1033
Score = 43 (20.2 bits), Expect = 2.4e-88, Sum P(3) = 2.4e-88
Identities = 26/124 (20%), Positives = 49/124 (39%)
Query: 558 QKNTADNKKSTKRSLTSSALEFELDELRKELASISGGILPHSVLSSQLIRLISARKPSTM 617
QK K S + + L EL E+ K L + G V + ++ +K +
Sbjct: 1203 QKAALVAKMSQREEVVKKCLG-ELTEVCKSLGKVFG------VHYFNIFNTVTLKKLAES 1255
Query: 618 EEASSNHLEKIIGKL--KTGKYGSRILEVISKCGNSEQQHDNNAVSKEEQGRDARASKRT 675
+ L +I G K KYG+ ++ ++ K D+ S +R+++R+
Sbjct: 1256 LSSDPEVLLQIDGVTEDKLEKYGAEVIPILQKYSEWTLPADDG--SPRISPSSSRSTRRS 1313
Query: 676 KKEK 679
E+
Sbjct: 1314 APEE 1317
Score = 40 (19.1 bits), Expect = 2.4e-88, Sum P(3) = 2.4e-88
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 498 RLTMLQLVDK-MKIKLKEIDSDL-------KREEIEQLVLQLIIDRVL 537
R TM LVD + K +I S + R E+L +LI+D++L
Sbjct: 1110 RFTMNMLVDIFLGSKSAKIQSGIFGQGSTYSRHNAERLFKKLILDKIL 1157
>UNIPROTKB|F1ND40 [details] [associations]
symbol:BLM "Bloom syndrome protein homolog" species:9031
"Gallus gallus" [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0000079 "regulation of cyclin-dependent protein
serine/threonine kinase activity" evidence=IEA] [GO:0000405 "bubble
DNA binding" evidence=IEA] [GO:0000723 "telomere maintenance"
evidence=IEA] [GO:0000729 "DNA double-strand break processing"
evidence=IEA] [GO:0000781 "chromosome, telomeric region"
evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
[GO:0001673 "male germ cell nucleus" evidence=IEA] [GO:0002039 "p53
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005657
"replication fork" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0009378
"four-way junction helicase activity" evidence=IEA] [GO:0010165
"response to X-ray" evidence=IEA] [GO:0016363 "nuclear matrix"
evidence=IEA] [GO:0016605 "PML body" evidence=IEA] [GO:0031297
"replication fork processing" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0045120 "pronucleus" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0045950 "negative regulation of mitotic recombination"
evidence=IEA] [GO:0046632 "alpha-beta T cell differentiation"
evidence=IEA] [GO:0046641 "positive regulation of alpha-beta T cell
proliferation" evidence=IEA] [GO:0051098 "regulation of binding"
evidence=IEA] [GO:0051259 "protein oligomerization" evidence=IEA]
[GO:0051782 "negative regulation of cell division" evidence=IEA]
[GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012532 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0051259 GO:GO:0005524 GO:GO:0005737
GO:GO:0045893 GO:GO:0000079 GO:GO:0005730 GO:GO:0016605
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
GO:GO:0001673 GO:GO:0003697 GO:GO:0016363 GO:GO:0010165
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GO:GO:0000781 GO:GO:0000723 GO:GO:0005657
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000733 GO:GO:0000800 GO:GO:0045120
GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0051782
GO:GO:0045950 GO:GO:0046641 GO:GO:0051098 GO:GO:0031297
EMBL:AADN02038832 IPI:IPI00823016 Ensembl:ENSGALT00000038179
ArrayExpress:F1ND40 Uniprot:F1ND40
Length = 1142
Score = 829 (296.9 bits), Expect = 2.9e-88, Sum P(3) = 2.9e-88
Identities = 177/372 (47%), Positives = 232/372 (62%)
Query: 87 FGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQD 146
FG+ ++R NQ E INA L G D ++M GGGKSLCYQLPA + G+ +V+SPL SLI D
Sbjct: 393 FGLHSFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSAGVTVVISPLRSLIID 452
Query: 147 QVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEK 206
QV L L I A LT + D Y L K + +K+LYVTPEK+ S R +S LE
Sbjct: 453 QVQKLKTLDIAATYLTGDITDADASKTYMQLSKKDPIIKLLYVTPEKVCASNRLLSALEN 512
Query: 207 CHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLM 266
+ L+ IDEAHC SQWGHDFR DYK L +L+ +F VPMMALTATA +VQ D+
Sbjct: 513 LYDRKLLARFVIDEAHCVSQWGHDFRKDYKRLNMLRKKFHSVPMMALTATANPRVQKDIQ 572
Query: 267 EMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRK 326
L + K F + NR NL Y V K KV +D + ++I++ +P+ +SGI+YC SR
Sbjct: 573 NQLEMLKPQVFTMSFNRHNLKYDVLPKKPK-KVAMDCL-EWIKKYHPH-DSGIIYCLSRH 629
Query: 327 ECEQVAQELRQRGISADYYHADMDINAREKVHMRW-SKNKLQVIVGTVAFGMGINKPDVR 385
EC+ A L++ G++A YHA + + R+ V +W ++ QVI T+AFGMGI+KPDVR
Sbjct: 630 ECDTTAAILQKEGLAALAYHAGLTDSNRDLVQKKWVNQEGCQVICATIAFGMGIDKPDVR 689
Query: 386 FVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFYENSG-------- 437
+VIH SL KS+E YYQESGRAGRDG S CLLF+ +DV R ++ E G
Sbjct: 690 YVIHASLPKSIEGYYQESGRAGRDGEMSHCLLFYSYSDVTRLRRLILMEKDGNSHTRQTH 749
Query: 438 LQNLYDIVRYSQ 449
NLY +V Y +
Sbjct: 750 FNNLYSMVHYCE 761
Score = 45 (20.9 bits), Expect = 2.9e-88, Sum P(3) = 2.9e-88
Identities = 22/94 (23%), Positives = 42/94 (44%)
Query: 555 SSVQKNTAD-NKKSTKRSLTSSALEFELDELRKELASISGGILPHSVLSSQLIRLISARK 613
S+++K A K S + + L EL + K L I + ++ S+ ++ I+
Sbjct: 926 SAIKKQRASVTKMSQREEMVKKCLG-ELTDTCKTLGKIFD-VHYFNIFSTSTLKKIAETL 983
Query: 614 PSTMEEASSNHLEKIIGKLKTGKYGSRILEVISK 647
S E ++ + K KYG+ I++V+ K
Sbjct: 984 SSDAEVLLQ--IDGVTED-KLEKYGAEIIKVMDK 1014
Score = 40 (19.1 bits), Expect = 2.9e-88, Sum P(3) = 2.9e-88
Identities = 6/17 (35%), Positives = 13/17 (76%)
Query: 521 REEIEQLVLQLIIDRVL 537
R +E+L +L++D++L
Sbjct: 869 RHNVERLFRKLVLDKIL 885
>UNIPROTKB|Q9I920 [details] [associations]
symbol:BLM "Bloom syndrome protein homolog" species:9031
"Gallus gallus" [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000729 "DNA
double-strand break processing" evidence=ISS] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012532 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006260 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
GO:GO:0004003 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 eggNOG:COG0514 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:AB040747 IPI:IPI00575589 UniGene:Gga.1914
ProteinModelPortal:Q9I920 STRING:Q9I920 PRIDE:Q9I920
HOGENOM:HOG000095239 HOVERGEN:HBG004850 InParanoid:Q9I920
OrthoDB:EOG4640B3 GO:GO:0000729 Uniprot:Q9I920
Length = 1142
Score = 825 (295.5 bits), Expect = 1.6e-87, Sum P(3) = 1.6e-87
Identities = 177/372 (47%), Positives = 231/372 (62%)
Query: 87 FGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQD 146
FG+ ++R NQ E INA L G D ++M GGGKSLCYQLPA + G+ +V+SPL SLI D
Sbjct: 393 FGLHSFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSAGVTVVISPLRSLIID 452
Query: 147 QVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEK 206
QV L L I A LT + D Y L K + +K+LYVTPEK+ S R +S LE
Sbjct: 453 QVQKLKTLDIAATYLTGDITDADASKTYMQLSKKDPIIKLLYVTPEKVCASNRLLSALEN 512
Query: 207 CHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLM 266
+ L+ IDEAHC SQWGHDFR DYK L +L+ +F VPMMALTATA +VQ D+
Sbjct: 513 LYDRKLLARFVIDEAHCVSQWGHDFRKDYKRLNMLRKKFHSVPMMALTATANPRVQKDIQ 572
Query: 267 EMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRK 326
L + K F + NR NL Y V K KV +D + ++I++ +P+ +SGI+YC SR
Sbjct: 573 NQLEMLKPQVFTMSFNRHNLKYDVLPKKPK-KVAMDCL-EWIKKYHPH-DSGIIYCLSRH 629
Query: 327 ECEQVAQELRQRGISADYYHADMDINAREKVHMRW-SKNKLQVIVGTVAFGMGINKPDVR 385
EC+ A L++ G++A YHA + + R+ V +W ++ QVI T+AFGMGI+KPDVR
Sbjct: 630 ECDTTAAILQKEGLAALAYHAGLTDSNRDLVQKKWVNQEGCQVICATIAFGMGIDKPDVR 689
Query: 386 FVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFYENSG-------- 437
+VIH SL KSVE YY ESGRAGRDG S CLLF+ +DV R ++ E G
Sbjct: 690 YVIHASLPKSVEGYYHESGRAGRDGEMSHCLLFYSYSDVTRLRRLILMEKDGNSHTRQTH 749
Query: 438 LQNLYDIVRYSQ 449
NLY +V Y +
Sbjct: 750 FNNLYSMVHYCE 761
Score = 45 (20.9 bits), Expect = 1.6e-87, Sum P(3) = 1.6e-87
Identities = 22/94 (23%), Positives = 42/94 (44%)
Query: 555 SSVQKNTAD-NKKSTKRSLTSSALEFELDELRKELASISGGILPHSVLSSQLIRLISARK 613
S+++K A K S + + L EL + K L I + ++ S+ ++ I+
Sbjct: 926 SAIRKQRASVTKMSQREEMVKKCLG-ELTDTCKTLGKIFD-VHYFNIFSTSTLKKIAETL 983
Query: 614 PSTMEEASSNHLEKIIGKLKTGKYGSRILEVISK 647
S E ++ + K KYG+ I++V+ K
Sbjct: 984 SSDAEVLLQ--IDGVTED-KLEKYGAEIIKVMDK 1014
Score = 37 (18.1 bits), Expect = 1.6e-87, Sum P(3) = 1.6e-87
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 521 REEIEQLVLQLIIDRVL 537
R +E+L +L +D++L
Sbjct: 869 RHNVERLFRKLFLDKIL 885
>ZFIN|ZDB-GENE-070702-5 [details] [associations]
symbol:blm "Bloom syndrome" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0045950 "negative
regulation of mitotic recombination" evidence=IMP] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012532
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
ZFIN:ZDB-GENE-070702-5 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0045950 EMBL:CABZ01019975
EMBL:CABZ01036951 EMBL:CABZ01036952 EMBL:CABZ01036953
EMBL:CABZ01036954 EMBL:CABZ01036955 EMBL:CABZ01036956
EMBL:CABZ01036957 EMBL:CABZ01036958 EMBL:CABZ01036959
EMBL:CABZ01036960 EMBL:CABZ01036961 EMBL:CABZ01036962
EMBL:CABZ01036963 EMBL:CABZ01036964 EMBL:CABZ01039756 EMBL:CR450750
IPI:IPI00934934 Ensembl:ENSDART00000110746 Uniprot:E7EZY7
Length = 1420
Score = 832 (297.9 bits), Expect = 1.1e-85, Sum P(2) = 1.1e-85
Identities = 173/354 (48%), Positives = 229/354 (64%)
Query: 87 FGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQD 146
FG+ +R NQ E INA L G D V+M GGGKSLCYQLPA + G+ +V+SPL SLI D
Sbjct: 655 FGLHQFRFNQLEAINASLLGEDTFVLMPTGGGKSLCYQLPACVSAGVTVVISPLRSLIVD 714
Query: 147 QVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEK 206
QV L L I A L+ + IY L + + +K+LY TPEK+ S R +S L+
Sbjct: 715 QVQKLTTLDICATSLSGDKKDSEAARIYMQLSRKDPAIKLLYATPEKVCASGRMISALQN 774
Query: 207 CHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLM 266
+ G L+ + IDEAHC SQWGHDFRPDYK L L+ FP+VP+MALTATAT +VQ D++
Sbjct: 775 LYERGLLARLVIDEAHCVSQWGHDFRPDYKRLHELRRMFPNVPIMALTATATPRVQKDIL 834
Query: 267 EMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRK 326
L + + F + NR NL Y V K K V +E ++I++ YP +SGIVYC SR
Sbjct: 835 NQLAMTRPQVFTMSFNRNNLKYSVLPKKP--KKVDEECIQWIKKYYPR-DSGIVYCLSRN 891
Query: 327 ECEQVAQELRQRGISADYYHADMDINAREKVHMRW-SKNKLQVIVGTVAFGMGINKPDVR 385
+C+ +A L++ GI+A YHA + + RE V +W +++ QV+ T+AFGMGI+KPDVR
Sbjct: 892 DCDTLADSLQRAGIAALAYHAGLSDSDREYVQNKWINQDGCQVMCATIAFGMGIDKPDVR 951
Query: 386 FVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFYENSGLQ 439
+VIH SL KSVE YYQESGRAGRDG S C+LF+ +DV R ++ + G Q
Sbjct: 952 YVIHASLPKSVEGYYQESGRAGRDGEISHCVLFYSYSDVIRIKRLIAMDKDGNQ 1005
Score = 62 (26.9 bits), Expect = 1.1e-85, Sum P(2) = 1.1e-85
Identities = 27/97 (27%), Positives = 49/97 (50%)
Query: 555 SSVQKNTAD--NKKSTKRSLTSSALEFELDELRKELASISGGILPHSVLSSQLIRLISAR 612
SS++K+ A K S + + L EL++L K+L + G I +++ S+ ++ I+
Sbjct: 1187 SSIRKHRASVCEKVSKREEMVKKCLG-ELNDLCKKLGKVFG-IHYYNIFSTATLKKIA-- 1242
Query: 613 KPSTMEEASSNHLEKIIGKL--KTGKYGSRILEVISK 647
T+ A L +I G K KYG+ +E++ K
Sbjct: 1243 --ETLS-ADPEVLLQIDGVTEDKLEKYGAEFIELLQK 1276
>UNIPROTKB|F1P3V1 [details] [associations]
symbol:BLM "Bloom syndrome protein homolog" species:9031
"Gallus gallus" [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0051880 "G-quadruplex DNA binding" evidence=IEA] [GO:0000079
"regulation of cyclin-dependent protein serine/threonine kinase
activity" evidence=IEA] [GO:0000405 "bubble DNA binding"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000781 "chromosome, telomeric region" evidence=IEA]
[GO:0000800 "lateral element" evidence=IEA] [GO:0001673 "male germ
cell nucleus" evidence=IEA] [GO:0002039 "p53 binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005657 "replication fork"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0009378 "four-way junction helicase
activity" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0016363 "nuclear matrix" evidence=IEA]
[GO:0016605 "PML body" evidence=IEA] [GO:0031297 "replication fork
processing" evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA
helicase activity" evidence=IEA] [GO:0045120 "pronucleus"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0045950 "negative regulation of
mitotic recombination" evidence=IEA] [GO:0046632 "alpha-beta T cell
differentiation" evidence=IEA] [GO:0046641 "positive regulation of
alpha-beta T cell proliferation" evidence=IEA] [GO:0051098
"regulation of binding" evidence=IEA] [GO:0051259 "protein
oligomerization" evidence=IEA] [GO:0051782 "negative regulation of
cell division" evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF08072 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00490 SMART:SM00956 GO:GO:0051259 GO:GO:0005524
GO:GO:0005737 GO:GO:0045893 GO:GO:0000079 GO:GO:0005730
GO:GO:0016605 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006310 GO:GO:0001673 GO:GO:0003697 GO:GO:0016363
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0000781 GO:GO:0000723 GO:GO:0005657
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000733 GO:GO:0000800 GO:GO:0045120
GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0051782
GO:GO:0045950 GO:GO:0046641 GO:GO:0051098 GO:GO:0031297
EMBL:AADN02038832 IPI:IPI00585933 Ensembl:ENSGALT00000013437
OMA:CDTTAAI ArrayExpress:F1P3V1 Uniprot:F1P3V1
Length = 1380
Score = 829 (296.9 bits), Expect = 1.2e-85, Sum P(3) = 1.2e-85
Identities = 177/372 (47%), Positives = 232/372 (62%)
Query: 87 FGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQD 146
FG+ ++R NQ E INA L G D ++M GGGKSLCYQLPA + G+ +V+SPL SLI D
Sbjct: 631 FGLHSFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSAGVTVVISPLRSLIID 690
Query: 147 QVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEK 206
QV L L I A LT + D Y L K + +K+LYVTPEK+ S R +S LE
Sbjct: 691 QVQKLKTLDIAATYLTGDITDADASKTYMQLSKKDPIIKLLYVTPEKVCASNRLLSALEN 750
Query: 207 CHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLM 266
+ L+ IDEAHC SQWGHDFR DYK L +L+ +F VPMMALTATA +VQ D+
Sbjct: 751 LYDRKLLARFVIDEAHCVSQWGHDFRKDYKRLNMLRKKFHSVPMMALTATANPRVQKDIQ 810
Query: 267 EMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRK 326
L + K F + NR NL Y V K KV +D + ++I++ +P+ +SGI+YC SR
Sbjct: 811 NQLEMLKPQVFTMSFNRHNLKYDVLPKKPK-KVAMDCL-EWIKKYHPH-DSGIIYCLSRH 867
Query: 327 ECEQVAQELRQRGISADYYHADMDINAREKVHMRW-SKNKLQVIVGTVAFGMGINKPDVR 385
EC+ A L++ G++A YHA + + R+ V +W ++ QVI T+AFGMGI+KPDVR
Sbjct: 868 ECDTTAAILQKEGLAALAYHAGLTDSNRDLVQKKWVNQEGCQVICATIAFGMGIDKPDVR 927
Query: 386 FVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFYENSG-------- 437
+VIH SL KS+E YYQESGRAGRDG S CLLF+ +DV R ++ E G
Sbjct: 928 YVIHASLPKSIEGYYQESGRAGRDGEMSHCLLFYSYSDVTRLRRLILMEKDGNSHTRQTH 987
Query: 438 LQNLYDIVRYSQ 449
NLY +V Y +
Sbjct: 988 FNNLYSMVHYCE 999
Score = 45 (20.9 bits), Expect = 1.2e-85, Sum P(3) = 1.2e-85
Identities = 22/94 (23%), Positives = 42/94 (44%)
Query: 555 SSVQKNTAD-NKKSTKRSLTSSALEFELDELRKELASISGGILPHSVLSSQLIRLISARK 613
S+++K A K S + + L EL + K L I + ++ S+ ++ I+
Sbjct: 1164 SAIKKQRASVTKMSQREEMVKKCLG-ELTDTCKTLGKIFD-VHYFNIFSTSTLKKIAETL 1221
Query: 614 PSTMEEASSNHLEKIIGKLKTGKYGSRILEVISK 647
S E ++ + K KYG+ I++V+ K
Sbjct: 1222 SSDAEVLLQ--IDGVTED-KLEKYGAEIIKVMDK 1252
Score = 40 (19.1 bits), Expect = 1.2e-85, Sum P(3) = 1.2e-85
Identities = 6/17 (35%), Positives = 13/17 (76%)
Query: 521 REEIEQLVLQLIIDRVL 537
R +E+L +L++D++L
Sbjct: 1107 RHNVERLFRKLVLDKIL 1123
>RGD|1308810 [details] [associations]
symbol:Blm "Bloom syndrome, RecQ helicase-like" species:10116
"Rattus norvegicus" [GO:0000079 "regulation of cyclin-dependent
protein serine/threonine kinase activity" evidence=ISO] [GO:0000405
"bubble DNA binding" evidence=ISO] [GO:0000723 "telomere
maintenance" evidence=ISO] [GO:0000729 "DNA double-strand break
processing" evidence=ISO] [GO:0000733 "DNA strand renaturation"
evidence=ISO] [GO:0000800 "lateral element" evidence=ISO]
[GO:0001673 "male germ cell nucleus" evidence=ISO] [GO:0002039 "p53
binding" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISO] [GO:0004386
"helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=IEA;ISO] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005657 "replication
fork" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006200 "ATP catabolic
process" evidence=ISO] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=ISO] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0009378 "four-way junction helicase activity"
evidence=ISO] [GO:0010165 "response to X-ray" evidence=ISO]
[GO:0016363 "nuclear matrix" evidence=ISO] [GO:0016605 "PML body"
evidence=ISO] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0031297 "replication fork processing" evidence=ISO] [GO:0036310
"annealing helicase activity" evidence=ISO] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
[GO:0045120 "pronucleus" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045910 "negative regulation of DNA recombination"
evidence=ISO] [GO:0045950 "negative regulation of mitotic
recombination" evidence=ISO] [GO:0046632 "alpha-beta T cell
differentiation" evidence=ISO] [GO:0046641 "positive regulation of
alpha-beta T cell proliferation" evidence=ISO] [GO:0051098
"regulation of binding" evidence=ISO] [GO:0051259 "protein
oligomerization" evidence=ISO] [GO:0051276 "chromosome
organization" evidence=ISO] [GO:0051782 "negative regulation of
cell division" evidence=ISO] [GO:0051880 "G-quadruplex DNA binding"
evidence=ISO] [GO:0000781 "chromosome, telomeric region"
evidence=ISO] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 InterPro:IPR012532
Pfam:PF00270 Pfam:PF00271 Pfam:PF08072 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 RGD:1308810 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614
GO:GO:0008026 IPI:IPI00561580 Ensembl:ENSRNOT00000030936
UCSC:RGD:1308810 ArrayExpress:D3ZSJ5 Uniprot:D3ZSJ5
Length = 999
Score = 838 (300.0 bits), Expect = 1.5e-85, Sum P(2) = 1.5e-85
Identities = 171/346 (49%), Positives = 229/346 (66%)
Query: 87 FGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQD 146
FG+ +R NQ E INA L G D ++M GGGKSLCYQLPA + G+ +V+SPL SLI D
Sbjct: 654 FGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVISPLRSLIVD 713
Query: 147 QVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEK 206
QV L + IPA LT + + IY L K + +K+LYVTPEK+ S R +S LE
Sbjct: 714 QVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYVTPEKVCASNRLISTLEN 773
Query: 207 CHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLM 266
+ L+ IDEAHC SQWGHDFR DYK + +L+ +FP VP+MALTATA +VQ D++
Sbjct: 774 LYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQRFPSVPVMALTATANPRVQKDIL 833
Query: 267 EMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRK 326
L I + F + NR NL Y V K KV +D + ++I++ +P +SGI+YC SRK
Sbjct: 834 TQLKILRPQVFSMSFNRHNLKYYVLPKKPK-KVALDCL-EWIRKHHPY-DSGIIYCLSRK 890
Query: 327 ECEQVAQELRQRGISADYYHADMDINAREKVHMRW-SKNKLQVIVGTVAFGMGINKPDVR 385
EC+ +A L++ G++A YHA + +AR++V +W +++ QVI T+AFGMGI+KPDVR
Sbjct: 891 ECDTMADTLQREGLAALAYHAGLSDSARDEVQHKWINQDNCQVICATIAFGMGIDKPDVR 950
Query: 386 FVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMV 431
FV+H SL KSVE YYQESGRAGRDG S C+LF+ DV R ++
Sbjct: 951 FVVHASLPKSVEGYYQESGRAGRDGEISHCVLFYTYHDVTRLKRLI 996
Score = 37 (18.1 bits), Expect = 1.5e-85, Sum P(2) = 1.5e-85
Identities = 8/35 (22%), Positives = 19/35 (54%)
Query: 61 SSSTAVENWSGTFEWDSRADDVRLNVFGIPAYRAN 95
SS+ ++ +W+ ++D A D +++ P R +
Sbjct: 138 SSADSLSDWADIDDFDVPASDAFVSLTRNPTTRVS 172
>WB|WBGene00001865 [details] [associations]
symbol:him-6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0051307 "meiotic chromosome separation" evidence=IMP]
[GO:0051276 "chromosome organization" evidence=IGI] [GO:0007059
"chromosome segregation" evidence=IGI] [GO:0007126 "meiosis"
evidence=IGI] [GO:0007067 "mitosis" evidence=IGI] [GO:0007131
"reciprocal meiotic recombination" evidence=IMP] [GO:0000077 "DNA
damage checkpoint" evidence=IMP] [GO:0010165 "response to X-ray"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0019899 "enzyme binding" evidence=IPI]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0005634 GO:GO:0008340 GO:GO:0000077 GO:GO:0043066
GO:GO:0007067 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0010165 GO:GO:0051276
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GO:GO:0007131 EMBL:AY095296 EMBL:Z83123 PIR:T24415
RefSeq:NP_502390.2 UniGene:Cel.5990 ProteinModelPortal:O18017
SMR:O18017 IntAct:O18017 MINT:MINT-227232 STRING:O18017
PaxDb:O18017 EnsemblMetazoa:T04A11.6 GeneID:178201
KEGG:cel:CELE_T04A11.6 UCSC:T04A11.6.1 CTD:178201 WormBase:T04A11.6
eggNOG:COG0514 GeneTree:ENSGT00550000074520 HOGENOM:HOG000022124
InParanoid:O18017 KO:K10901 OMA:PEDANDS NextBio:900142
GO:GO:0051307 Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
Uniprot:O18017
Length = 988
Score = 811 (290.5 bits), Expect = 1.5e-85, Sum P(2) = 1.5e-85
Identities = 172/366 (46%), Positives = 231/366 (63%)
Query: 81 DVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPL 140
D + FG +R Q++ I + L G D V+M G GKSLCYQLPAV+ G+ +VVSPL
Sbjct: 237 DTLKSKFGFNQFRHRQKQCILSTLMGHDTFVLMPTGAGKSLCYQLPAVILPGVTVVVSPL 296
Query: 141 LSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRF 200
SLI+DQ M + LGI LT+ ++ IY L G +K+LYVTPEKIS S R
Sbjct: 297 RSLIEDQKMKMKELGIGCEALTADLGAPAQEKIYAELGSGNPSIKLLYVTPEKISASGRL 356
Query: 201 MSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQF--PDVPMMALTATAT 258
S H G L+ IDEAHC SQWGHDFRPDY L L+ ++ P VP++ALTATAT
Sbjct: 357 NSVFFDLHRRGLLARFVIDEAHCVSQWGHDFRPDYTKLSSLREKYANPPVPIIALTATAT 416
Query: 259 QKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESG 318
K+ D + L ++ F+S+ R NL Y + K++ + +I+ + K +++ YP +SG
Sbjct: 417 PKIVTDARDHLKMQNSKLFISSFVRDNLKYDLIPKAA--RSLINVVEK-MKQLYPG-KSG 472
Query: 319 IVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMG 378
IVYC SRKECE V L + G+SA+ YHA ++ N R V W NK VI T+AFGMG
Sbjct: 473 IVYCLSRKECETVQMMLTKAGLSAEVYHAGLNDNLRVSVQRSWIANKFDVICATIAFGMG 532
Query: 379 INKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFYENS-- 436
I+KPDVRFVIH+SL KS+E YYQE+GRAGRDG+PS CL+ + D R M+ N+
Sbjct: 533 IDKPDVRFVIHYSLPKSIEGYYQETGRAGRDGMPSYCLMLYSYHDSIRLRRMIEEGNTTT 592
Query: 437 GLQNLY 442
G+++++
Sbjct: 593 GVRSMH 598
Score = 64 (27.6 bits), Expect = 1.5e-85, Sum P(2) = 1.5e-85
Identities = 23/91 (25%), Positives = 45/91 (49%)
Query: 580 ELDELRKELASISGGILPHSVLSSQLIRLISARKPSTMEEASSNHLEKIIGKLKTGKYGS 639
+L L +A SG P+S++S + I I+A P T + ++ + ++K KYG
Sbjct: 816 DLTHLITAVAESSGLSGPYSIVSREGIEQIAALLPRTNSDLL--RIDSMT-QIKVTKYGR 872
Query: 640 RILEVIS----KCGNSEQQHDNNAVSKEEQG 666
I+E+++ + E++ N + K + G
Sbjct: 873 LIMELLATYWKQVDEREEEEMRNQLDKLKSG 903
>POMBASE|SPAC2G11.12 [details] [associations]
symbol:rqh1 "RecQ type DNA helicase Rqh1" species:4896
"Schizosaccharomyces pombe" [GO:0000723 "telomere maintenance"
evidence=IGI;IMP] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IGI] [GO:0000725
"recombinational repair" evidence=IGI] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IC] [GO:0006268 "DNA unwinding
involved in replication" evidence=ISO] [GO:0006974 "response to DNA
damage stimulus" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0009650 "UV protection"
evidence=IMP] [GO:0031422 "RecQ helicase-Topo III complex"
evidence=IDA] [GO:0031573 "intra-S DNA damage checkpoint"
evidence=IDA] [GO:0034065 "replication fork processing at rDNA
locus" evidence=IGI] [GO:0043007 "maintenance of rDNA"
evidence=IMP] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IDA] [GO:0043596 "nuclear replication fork"
evidence=IC] [GO:0045950 "negative regulation of mitotic
recombination" evidence=IMP] [GO:0071140 "resolution of mitotic
recombination intermediates" evidence=IMP] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 PomBase:SPAC2G11.12 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0043596 GO:GO:0000724 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723
GO:GO:0007131 eggNOG:COG0514 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0045950 GO:GO:0031573
GO:GO:0009650 GO:GO:0006268 EMBL:Y09426 PIR:S62467
RefSeq:NP_593092.1 ProteinModelPortal:Q09811 STRING:Q09811
EnsemblFungi:SPAC2G11.12.1 GeneID:2541620 KEGG:spo:SPAC2G11.12
OrthoDB:EOG4XSPZ5 NextBio:20802714 GO:GO:0031422 GO:GO:0034065
GO:GO:0071140 Uniprot:Q09811
Length = 1328
Score = 801 (287.0 bits), Expect = 3.8e-82, Sum P(2) = 3.8e-82
Identities = 157/357 (43%), Positives = 225/357 (63%)
Query: 72 TFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR- 130
++ W + F + +R NQ E IN LSG+DV ++M GGGKSLCYQLPAV+
Sbjct: 500 SYPWSKEVLGCLKHKFHLKGFRKNQLEAINGTLSGKDVFILMPTGGGKSLCYQLPAVIEG 559
Query: 131 ---EGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKML 187
G+ LV+SPLLSL+QDQ+ L L IP+ L+ ++ + + L +K+L
Sbjct: 560 GASRGVTLVISPLLSLMQDQLDHLRKLNIPSLPLSGEQPADERRQVISFLMAKNVLVKLL 619
Query: 188 YVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPD 247
YVTPE ++ + L+ + L+ I IDEAHC S WGHDFRPDYK LG+L+ ++
Sbjct: 620 YVTPEGLASNGAITRVLKSLYERKLLARIVIDEAHCVSHWGHDFRPDYKQLGLLRDRYQG 679
Query: 248 VPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKY 307
+P MALTATA + V+ D++ L + C++ S+ NRPNLFY ++ K K + E+ ++
Sbjct: 680 IPFMALTATANEIVKKDIINTLRMENCLELKSSFNRPNLFYEIKPK----KDLYTELYRF 735
Query: 308 IQESYPNSESGIVYCFSRKECEQVAQELRQR-GISADYYHADMDINAREKVHMRWSKNKL 366
I + + ESGI+YC SR CEQVA +LR G+ A +YHA ++ R+++ W
Sbjct: 736 ISNGHLH-ESGIIYCLSRTSCEQVAAKLRNDYGLKAWHYHAGLEKVERQRIQNEWQSGSY 794
Query: 367 QVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPAD 423
++IV T+AFGMG++K DVRFVIHHS KS+E YYQE+GRAGRDG P+ C++F+ D
Sbjct: 795 KIIVATIAFGMGVDKGDVRFVIHHSFPKSLEGYYQETGRAGRDGKPAHCIMFYSYKD 851
Score = 58 (25.5 bits), Expect = 3.8e-82, Sum P(2) = 3.8e-82
Identities = 24/104 (23%), Positives = 46/104 (44%)
Query: 546 GKKIIKLEISSVQKNTADNKKSTKRSLTSSAL-EFELDELRKELASISGGILPHSVLSSQ 604
GK+ I L++ + +S RS T AL E++L + G + SQ
Sbjct: 1025 GKRRIILDVKESSSKPDTSSRSLSRSKTLPALREYQLKSTTASVDCSIGTREVDEIYDSQ 1084
Query: 605 LIRLISARKPSTMEEASSNHLEKIIGKLKTGKYGSRILEVISKC 648
+ + KPS + + LE++ G+ +Y ++V+++C
Sbjct: 1085 MPPV----KPSLIHSRNKIDLEELSGQKFMSEYE---IDVMTRC 1121
>CGD|CAL0004296 [details] [associations]
symbol:SGS1 species:5476 "Candida albicans" [GO:0006974
"response to DNA damage stimulus" evidence=IMP] [GO:0001302
"replicative cell aging" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0031422 "RecQ helicase-Topo III complex"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0044182
"filamentous growth of a population of unicellular organisms"
evidence=IMP] [GO:0031860 "telomeric 3' overhang formation"
evidence=IEA] [GO:0000706 "meiotic DNA double-strand break
processing" evidence=IEA] [GO:0006268 "DNA unwinding involved in
replication" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0031573 "intra-S DNA damage
checkpoint" evidence=IEA] [GO:0031292 "gene conversion at
mating-type locus, DNA double-strand break processing"
evidence=IEA] [GO:0000722 "telomere maintenance via recombination"
evidence=IEA] [GO:0010947 "negative regulation of meiotic joint
molecule formation" evidence=IEA] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=IEA] [GO:0045132
"meiotic chromosome segregation" evidence=IEA] [GO:0030447
"filamentous growth" evidence=IMP] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00490 SMART:SM00956
CGD:CAL0004296 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0003676
GO:GO:0006974 GO:GO:0005622 GO:GO:0006310 EMBL:AACQ01000059
EMBL:AACQ01000058 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 eggNOG:COG0514 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0044182 RefSeq:XP_717059.1
RefSeq:XP_717138.1 ProteinModelPortal:Q5A5R4 STRING:Q5A5R4
GeneID:3641258 GeneID:3641294 KEGG:cal:CaO19.12795
KEGG:cal:CaO19.5335 Uniprot:Q5A5R4
Length = 1189
Score = 805 (288.4 bits), Expect = 6.9e-82, Sum P(2) = 6.9e-82
Identities = 157/339 (46%), Positives = 226/339 (66%)
Query: 85 NVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR----EGIALVVSPL 140
NVF + ++RANQ E ++A LS +DV V+M GGGKSLCYQLPA+++ +G +V+SPL
Sbjct: 459 NVFKLKSFRANQLEAVSATLSNKDVFVLMPTGGGKSLCYQLPALVKSGATKGTTVVISPL 518
Query: 141 LSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRF 200
+SL+QDQV L A I A M +S +D K EG L ++Y++PE+ +KS
Sbjct: 519 ISLMQDQVQHLLAKNIKAGMFSSKGGNDDNKHTIHLFR--EGFLDIVYLSPERANKSNAM 576
Query: 201 MSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQK 260
+ + K ++ +L+ + IDEAHC S WGHDFRPDY+ LG K +FP VP+MALTATA +K
Sbjct: 577 QTIMTKLYNNNQLARVVIDEAHCLSSWGHDFRPDYQGLGFFKDKFPKVPIMALTATANEK 636
Query: 261 VQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIV 320
VQ D++ L ++ + + NR NLFY ++ K S ++ EI YI + + +SGI+
Sbjct: 637 VQMDILHNLKMKDPVLLKQSFNRTNLFYEIKLKKS--NCLL-EIKDYILSRF-SGKSGII 692
Query: 321 YCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGIN 380
YC S++ CE + +L + G+ +YHA M + R + RW +NK+QVI T+AFGMGI+
Sbjct: 693 YCHSKQSCEHTSMKLNEYGLKTSFYHAGMSADKRFNIQKRWQENKIQVICATIAFGMGID 752
Query: 381 KPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFF 419
KPDVRFVIH L +++E YYQE+GRAGRDG SEC++++
Sbjct: 753 KPDVRFVIHLYLPRTLEGYYQETGRAGRDGNFSECVMYY 791
Score = 44 (20.5 bits), Expect = 6.9e-82, Sum P(2) = 6.9e-82
Identities = 31/121 (25%), Positives = 50/121 (41%)
Query: 547 KKIIKLEISSVQKNTADNKKSTKRSLTSSALEFE------LDELRKELASISGG-ILPHS 599
K KLE ++K ++ K+ LTS A E + + + +++SIS + P+
Sbjct: 1066 KDFAKLE--GIKKGQLEHFTHFKKILTSLAREKKKMANTSISTVVSDISSISTSTVSPYF 1123
Query: 600 VLSSQ------LIRLISARKPSTMEEASSNHLEKIIGKLKTGKYGSRILEVISKC-GNSE 652
S Q +R S KPS SS +K K G+ G+ + K NS
Sbjct: 1124 QPSQQDQEILDTLRAASQPKPSKSSTQSSYTKKKGSKKFNKGRSGNYFKKAAPKSLANSH 1183
Query: 653 Q 653
+
Sbjct: 1184 R 1184
>UNIPROTKB|Q5A5R4 [details] [associations]
symbol:SGS1 "Putative uncharacterized protein SGS1"
species:237561 "Candida albicans SC5314" [GO:0001302 "replicative
cell aging" evidence=IMP] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0044182 "filamentous growth of a population of
unicellular organisms" evidence=IMP] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00490 SMART:SM00956
CGD:CAL0004296 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0003676
GO:GO:0006974 GO:GO:0005622 GO:GO:0006310 EMBL:AACQ01000059
EMBL:AACQ01000058 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 eggNOG:COG0514 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0044182 RefSeq:XP_717059.1
RefSeq:XP_717138.1 ProteinModelPortal:Q5A5R4 STRING:Q5A5R4
GeneID:3641258 GeneID:3641294 KEGG:cal:CaO19.12795
KEGG:cal:CaO19.5335 Uniprot:Q5A5R4
Length = 1189
Score = 805 (288.4 bits), Expect = 6.9e-82, Sum P(2) = 6.9e-82
Identities = 157/339 (46%), Positives = 226/339 (66%)
Query: 85 NVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR----EGIALVVSPL 140
NVF + ++RANQ E ++A LS +DV V+M GGGKSLCYQLPA+++ +G +V+SPL
Sbjct: 459 NVFKLKSFRANQLEAVSATLSNKDVFVLMPTGGGKSLCYQLPALVKSGATKGTTVVISPL 518
Query: 141 LSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRF 200
+SL+QDQV L A I A M +S +D K EG L ++Y++PE+ +KS
Sbjct: 519 ISLMQDQVQHLLAKNIKAGMFSSKGGNDDNKHTIHLFR--EGFLDIVYLSPERANKSNAM 576
Query: 201 MSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQK 260
+ + K ++ +L+ + IDEAHC S WGHDFRPDY+ LG K +FP VP+MALTATA +K
Sbjct: 577 QTIMTKLYNNNQLARVVIDEAHCLSSWGHDFRPDYQGLGFFKDKFPKVPIMALTATANEK 636
Query: 261 VQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIV 320
VQ D++ L ++ + + NR NLFY ++ K S ++ EI YI + + +SGI+
Sbjct: 637 VQMDILHNLKMKDPVLLKQSFNRTNLFYEIKLKKS--NCLL-EIKDYILSRF-SGKSGII 692
Query: 321 YCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGIN 380
YC S++ CE + +L + G+ +YHA M + R + RW +NK+QVI T+AFGMGI+
Sbjct: 693 YCHSKQSCEHTSMKLNEYGLKTSFYHAGMSADKRFNIQKRWQENKIQVICATIAFGMGID 752
Query: 381 KPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFF 419
KPDVRFVIH L +++E YYQE+GRAGRDG SEC++++
Sbjct: 753 KPDVRFVIHLYLPRTLEGYYQETGRAGRDGNFSECVMYY 791
Score = 44 (20.5 bits), Expect = 6.9e-82, Sum P(2) = 6.9e-82
Identities = 31/121 (25%), Positives = 50/121 (41%)
Query: 547 KKIIKLEISSVQKNTADNKKSTKRSLTSSALEFE------LDELRKELASISGG-ILPHS 599
K KLE ++K ++ K+ LTS A E + + + +++SIS + P+
Sbjct: 1066 KDFAKLE--GIKKGQLEHFTHFKKILTSLAREKKKMANTSISTVVSDISSISTSTVSPYF 1123
Query: 600 VLSSQ------LIRLISARKPSTMEEASSNHLEKIIGKLKTGKYGSRILEVISKC-GNSE 652
S Q +R S KPS SS +K K G+ G+ + K NS
Sbjct: 1124 QPSQQDQEILDTLRAASQPKPSKSSTQSSYTKKKGSKKFNKGRSGNYFKKAAPKSLANSH 1183
Query: 653 Q 653
+
Sbjct: 1184 R 1184
>TIGR_CMR|GSU_0898 [details] [associations]
symbol:GSU_0898 "ATP-dependent DNA helicase RecQ"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR006293
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0009432
HOGENOM:HOG000044388 KO:K03654 TIGRFAMs:TIGR01389 OMA:YCLSRAK
RefSeq:NP_951954.1 ProteinModelPortal:Q74ER2 SMR:Q74ER2
GeneID:2687381 KEGG:gsu:GSU0898 PATRIC:22024565
ProtClustDB:CLSK828090 BioCyc:GSUL243231:GH27-885-MONOMER
Uniprot:Q74ER2
Length = 603
Score = 766 (274.7 bits), Expect = 7.4e-82, Sum P(2) = 7.4e-82
Identities = 158/352 (44%), Positives = 231/352 (65%)
Query: 86 VFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQ 145
VFG ++R Q+EI++ V G D V+M GGGKSLCYQ+P+++R G+ +V+SPL+SL++
Sbjct: 12 VFGYRSFRPFQEEIVDRVARGGDTFVLMPTGGGKSLCYQIPSLVRPGVGIVISPLISLMK 71
Query: 146 DQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLE 205
DQV L G+ A ST + + + + L G GEL +LYV PE++ + F+ +L
Sbjct: 72 DQVDALRENGVAAACYNSTLGERESRRVLARLH-G-GELDLLYVAPERLM-TDAFLERLR 128
Query: 206 KCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDL 265
+ ++L +IDEAHC SQWGHDFRP+Y LG L+ FP VPM+ALTATA + + D+
Sbjct: 129 EIP----IALFAIDEAHCVSQWGHDFRPEYVELGRLRGLFPTVPMIALTATADAQTRGDI 184
Query: 266 MEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSR 325
+ L +R FV+ +RPN+ Y V EK + + + +A + P E+GIVYC SR
Sbjct: 185 VTRLGLRDAEMFVTGFDRPNIRYSVLEKQKPFRQLEEFLA-----TRPR-EAGIVYCLSR 238
Query: 326 KECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVR 385
K E+VA++LR G+ A YHA + R +V + ++ ++V+V TVAFGMGI+KP+VR
Sbjct: 239 KRVEEVAEKLRAAGVEAGAYHAGLADAERSRVQEAFLRDDIRVVVATVAFGMGIDKPNVR 298
Query: 386 FVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFYENSG 437
FV+H+ L K++E+YYQE+GRAGRDGLP+E LL F D+P S++ E+ G
Sbjct: 299 FVVHYDLPKNIESYYQETGRAGRDGLPAEALLLFGYGDIPVSRSLI--ESGG 348
Score = 74 (31.1 bits), Expect = 7.4e-82, Sum P(2) = 7.4e-82
Identities = 23/72 (31%), Positives = 38/72 (52%)
Query: 580 ELDELRKELASISGGILPHSVLSSQLIRLISARKPSTMEEASSNHLEKI--IGKLKTGKY 637
EL LRK LA + P+ + S + +++ +P+T EE L ++ +G+ K G+Y
Sbjct: 536 ELRALRKRLAD-DQQVPPYIIFSDATLAEMASLRPTTPEE-----LLRVNGVGERKLGRY 589
Query: 638 GSRILEVISKCG 649
G+ LE I G
Sbjct: 590 GAPFLEAIRSHG 601
Score = 41 (19.5 bits), Expect = 2.2e-78, Sum P(2) = 2.2e-78
Identities = 16/61 (26%), Positives = 32/61 (52%)
Query: 539 RIGPFSPGKKIIKL--EISSVQKNTADNKKSTKRSLTSSALEFELDELR----KELASIS 592
R G +P ++ +L E+ +++K AD+++ + S A E+ LR +EL ++
Sbjct: 520 RPGAATPAERDEELFQELRALRKRLADDQQVPPYIIFSDATLAEMASLRPTTPEELLRVN 579
Query: 593 G 593
G
Sbjct: 580 G 580
>UNIPROTKB|Q9KVF0 [details] [associations]
symbol:VC_0196 "ATP-dependent DNA helicase RecQ"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043 KO:K03654
TIGRFAMs:TIGR01389 OMA:YCLSRAK ProtClustDB:PRK11057 PIR:E82351
RefSeq:NP_229853.2 ProteinModelPortal:Q9KVF0 SMR:Q9KVF0
DNASU:2614560 GeneID:2614560 KEGG:vch:VC0196 PATRIC:20079438
Uniprot:Q9KVF0
Length = 620
Score = 815 (292.0 bits), Expect = 3.2e-81, P = 3.2e-81
Identities = 161/354 (45%), Positives = 242/354 (68%)
Query: 86 VFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQ 145
VFG +R QQE+I A L+GRD LVIM GGGKSLCYQ+PA++ EG+ LV+SPL+SL++
Sbjct: 32 VFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPLISLMK 91
Query: 146 DQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLE 205
DQV L A G+ A + ST ++E+ IY + G+ LK+LYV+PE++ ++ F+ +L
Sbjct: 92 DQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQ--LKLLYVSPERVLTAE-FIERLS 148
Query: 206 KCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDL 265
H L++I++DEAHC SQWGHDFRP+Y +LG LK +FP+VP+MALTATA ++D+
Sbjct: 149 ---HLP-LAMIAVDEAHCISQWGHDFRPEYASLGQLKQRFPNVPVMALTATADDATRHDI 204
Query: 266 MEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSR 325
M+ L + + +++ + +RPN+ YM+ EK + ++ +Y++ + GI+YC SR
Sbjct: 205 MQRLQLNEPHQYLGSFDRPNIRYMLVEKHKP----VSQVIRYLETQ--RGQCGIIYCGSR 258
Query: 326 KECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVR 385
K+ E + ++L I A YHA MD + R V + ++ LQ++V TVAFGMGINKP+VR
Sbjct: 259 KKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKPNVR 318
Query: 386 FVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFYENSGLQ 439
FV+H + +++E+YYQE+GRAGRDGLP+E ++ + PAD+ M+ + G Q
Sbjct: 319 FVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMNWLRRMLDEKPDGAQ 372
>TIGR_CMR|VC_0196 [details] [associations]
symbol:VC_0196 "ATP-dependent DNA helicase RecQ"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] [GO:0006310 "DNA recombination"
evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043 KO:K03654
TIGRFAMs:TIGR01389 OMA:YCLSRAK ProtClustDB:PRK11057 PIR:E82351
RefSeq:NP_229853.2 ProteinModelPortal:Q9KVF0 SMR:Q9KVF0
DNASU:2614560 GeneID:2614560 KEGG:vch:VC0196 PATRIC:20079438
Uniprot:Q9KVF0
Length = 620
Score = 815 (292.0 bits), Expect = 3.2e-81, P = 3.2e-81
Identities = 161/354 (45%), Positives = 242/354 (68%)
Query: 86 VFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQ 145
VFG +R QQE+I A L+GRD LVIM GGGKSLCYQ+PA++ EG+ LV+SPL+SL++
Sbjct: 32 VFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPLISLMK 91
Query: 146 DQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLE 205
DQV L A G+ A + ST ++E+ IY + G+ LK+LYV+PE++ ++ F+ +L
Sbjct: 92 DQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQ--LKLLYVSPERVLTAE-FIERLS 148
Query: 206 KCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDL 265
H L++I++DEAHC SQWGHDFRP+Y +LG LK +FP+VP+MALTATA ++D+
Sbjct: 149 ---HLP-LAMIAVDEAHCISQWGHDFRPEYASLGQLKQRFPNVPVMALTATADDATRHDI 204
Query: 266 MEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSR 325
M+ L + + +++ + +RPN+ YM+ EK + ++ +Y++ + GI+YC SR
Sbjct: 205 MQRLQLNEPHQYLGSFDRPNIRYMLVEKHKP----VSQVIRYLETQ--RGQCGIIYCGSR 258
Query: 326 KECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVR 385
K+ E + ++L I A YHA MD + R V + ++ LQ++V TVAFGMGINKP+VR
Sbjct: 259 KKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKPNVR 318
Query: 386 FVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFYENSGLQ 439
FV+H + +++E+YYQE+GRAGRDGLP+E ++ + PAD+ M+ + G Q
Sbjct: 319 FVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMNWLRRMLDEKPDGAQ 372
>SGD|S000004802 [details] [associations]
symbol:SGS1 "Nucleolar DNA helicase of the RecQ family"
species:4932 "Saccharomyces cerevisiae" [GO:0004386 "helicase
activity" evidence=IEA] [GO:0000722 "telomere maintenance via
recombination" evidence=IGI;IMP] [GO:0031860 "telomeric 3' overhang
formation" evidence=IGI] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000706 "meiotic
DNA double-strand break processing" evidence=IGI] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA;IDA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0010520
"regulation of reciprocal meiotic recombination" evidence=IGI]
[GO:0031573 "intra-S DNA damage checkpoint" evidence=IGI;IMP]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IGI;IMP] [GO:0031292 "gene conversion at
mating-type locus, DNA double-strand break processing"
evidence=IGI] [GO:0000729 "DNA double-strand break processing"
evidence=IGI] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
[GO:0031422 "RecQ helicase-Topo III complex" evidence=IDA;IPI]
[GO:0001302 "replicative cell aging" evidence=IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0010947 "negative regulation of meiotic joint
molecule formation" evidence=IGI] [GO:0045132 "meiotic chromosome
segregation" evidence=IMP] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IDA] [GO:0006268 "DNA unwinding involved in
replication" evidence=IDA] [GO:0051276 "chromosome organization"
evidence=IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00490 SMART:SM00956 SGD:S000004802
GO:GO:0005524 GO:GO:0005730 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0001302 GO:GO:0003676 EMBL:BK006946 GO:GO:0000070
GO:GO:0004003 GO:GO:0000724 GO:GO:0045132 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000706
GO:GO:0000722 eggNOG:COG0514 GeneTree:ENSGT00550000074520 KO:K10901
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0031573
EMBL:Z47815 GO:GO:0031292 GO:GO:0031860 GO:GO:0006268
OrthoDB:EOG4XSPZ5 GO:GO:0031422 EMBL:U22341 EMBL:L07870 PIR:S50918
RefSeq:NP_013915.1 PDB:1D8B PDBsum:1D8B ProteinModelPortal:P35187
SMR:P35187 DIP:DIP-2911N IntAct:P35187 MINT:MINT-442647
STRING:P35187 PeptideAtlas:P35187 EnsemblFungi:YMR190C
GeneID:855228 KEGG:sce:YMR190C CYGD:YMR190c HOGENOM:HOG000141897
OMA:TIFEICD EvolutionaryTrace:P35187 NextBio:978762
Genevestigator:P35187 GermOnline:YMR190C GO:GO:0010947
InterPro:IPR022758 Pfam:PF11408 Uniprot:P35187
Length = 1447
Score = 801 (287.0 bits), Expect = 7.4e-81, Sum P(2) = 7.4e-81
Identities = 163/379 (43%), Positives = 242/379 (63%)
Query: 61 SSSTAVENWSG-TFEWDSRADDV--RLN-VFGIPAYRANQQEIINAVLSGRDVLVIMAAG 116
S S +G T+ W +D+V RL+ VF +P +R NQ E +NA L G+DV V+M G
Sbjct: 647 SKSNLSSKTNGPTYPW---SDEVLYRLHEVFKLPGFRPNQLEAVNATLQGKDVFVLMPTG 703
Query: 117 GGKSLCYQLPAVLREG----IALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKF 172
GGKSLCYQLPAV++ G +V+SPL+SL+QDQV L I A M +S + E +
Sbjct: 704 GGKSLCYQLPAVVKSGKTHGTTIVISPLISLMQDQVEHLLNKNIKASMFSSRGTAEQRRQ 763
Query: 173 IYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFR 232
+ G L ++Y++PE IS S++ + + + G+L+ I +DEAHC S WGHDFR
Sbjct: 764 TFNLFINGL--LDLVYISPEMISASEQCKRAISRLYADGKLARIVVDEAHCVSNWGHDFR 821
Query: 233 PDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVRE 292
PDYK L K ++PD+PM+ALTATA+++V+ D++ L +++ + + NR NL+Y V +
Sbjct: 822 PDYKELKFFKREYPDIPMIALTATASEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEVNK 881
Query: 293 KSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDIN 352
K+ K I EI ++ + N ++GI+YC S+K CEQ + ++++ GI YYHA M+ +
Sbjct: 882 KT---KNTIFEICDAVKSRFKN-QTGIIYCHSKKSCEQTSAQMQRNGIKCAYYHAGMEPD 937
Query: 353 AREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLP 412
R V W +++QVI TVAFGMGI+KPDVRFV H ++ +++E YYQE+GRAGRDG
Sbjct: 938 ERLSVQKAWQADEIQVICATVAFGMGIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNY 997
Query: 413 SECLLFFRPADVPRQSSMV 431
S C+ +F D+ +M+
Sbjct: 998 SYCITYFSFRDIRTMQTMI 1016
Score = 49 (22.3 bits), Expect = 7.4e-81, Sum P(2) = 7.4e-81
Identities = 35/145 (24%), Positives = 67/145 (46%)
Query: 482 AQCIISLLQDIQDNNQRLTMLQLVDKMK----IKLKEIDSD----------LKREEIEQL 527
A+ I+ L++ IQ N+R+T++ D K K+ + + D +++ EIE++
Sbjct: 1089 AKKIVKLVESIQ--NERVTIIYCQDVFKGSRSSKIVQANHDTLEEHGIGKSMQKSEIERI 1146
Query: 528 VLQLIIDRVL---------------VRIGPFSPGKKII--KLEISSVQKNTADNKKSTKR 570
LI RVL V++GP + KK++ K+EI +A N + +
Sbjct: 1147 FFHLITIRVLQEYSIMNNSGFASSYVKVGPNA--KKLLTGKMEIKMQFTISAPNSRPSTS 1204
Query: 571 SLTSSALEFELDELRKELASISGGI 595
S + A E + + ++ +I G +
Sbjct: 1205 S-SFQANEDNIPVIAQKSTTIGGNV 1228
Score = 40 (19.1 bits), Expect = 6.6e-80, Sum P(2) = 6.6e-80
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 549 IIKLEISSVQKNTADNKKSTKRSLTSSA 576
I ++ S + KNT +K T RS++ S+
Sbjct: 1400 INQIRQSQLPKNTTSSKSGT-RSISKSS 1426
>UNIPROTKB|P15043 [details] [associations]
symbol:recQ species:83333 "Escherichia coli K-12"
[GO:0046914 "transition metal ion binding" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IEA;IDA] [GO:0008270 "zinc ion binding" evidence=IMP]
[GO:0017116 "single-stranded DNA-dependent ATP-dependent DNA
helicase activity" evidence=IDA] [GO:0017117 "single-stranded
DNA-dependent ATP-dependent DNA helicase complex" evidence=IDA]
[GO:0006310 "DNA recombination" evidence=IEA;IDA;IMP] [GO:0006281
"DNA repair" evidence=IEA;IGI] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA;IGI] [GO:0005515 "protein binding"
evidence=IPI] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006200 "ATP
catabolic process" evidence=IDA] [GO:0043590 "bacterial nucleoid"
evidence=IDA] [GO:0030894 "replisome" evidence=IDA] [GO:0009432
"SOS response" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0008270 GO:GO:0006281 GO:GO:0046914
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
EMBL:M87049 eggNOG:COG0514 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0043590 GO:GO:0009432 GO:GO:0030894
GO:GO:0017116 GO:GO:0017117 EMBL:M30198 HOGENOM:HOG000044388
KO:K03654 TIGRFAMs:TIGR01389 RefSeq:YP_026263.3 RefSeq:YP_491620.1
PDB:1OYW PDB:1OYY PDB:1WUD PDBsum:1OYW PDBsum:1OYY PDBsum:1WUD
ProteinModelPortal:P15043 SMR:P15043 DIP:DIP-10656N IntAct:P15043
MINT:MINT-1223947 EnsemblBacteria:EBESCT00000003276
EnsemblBacteria:EBESCT00000015928 GeneID:12930625 GeneID:948318
KEGG:ecj:Y75_p3356 KEGG:eco:b3822 PATRIC:32123145 EchoBASE:EB0826
EcoGene:EG10833 OMA:YCLSRAK ProtClustDB:PRK11057
BioCyc:EcoCyc:EG10833-MONOMER BioCyc:ECOL316407:JW5855-MONOMER
BioCyc:MetaCyc:EG10833-MONOMER EvolutionaryTrace:P15043
Genevestigator:P15043 Uniprot:P15043
Length = 609
Score = 811 (290.5 bits), Expect = 8.5e-81, P = 8.5e-81
Identities = 161/349 (46%), Positives = 234/349 (67%)
Query: 76 DSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIAL 135
+S A V FG +R Q+EII+ VLSGRD LV+M GGGKSLCYQ+PA+L G+ +
Sbjct: 10 ESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTV 69
Query: 136 VVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKIS 195
VVSPL+SL++DQV L A G+ A L ST ++E + + G+ +++LY+ PE++
Sbjct: 70 VVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLM 127
Query: 196 KSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTA 255
F LE H + L+++DEAHC SQWGHDFRP+Y LG L+ +FP +P MALTA
Sbjct: 128 LDN-F---LEHLAHWNPV-LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTA 182
Query: 256 TATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNS 315
TA + D++ +L + + +S+ +RPN+ YM+ EK +D++ +Y+QE
Sbjct: 183 TADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKP----LDQLMRYVQEQ--RG 236
Query: 316 ESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAF 375
+SGI+YC SR + E A L+ +GISA YHA ++ N R V ++ ++ LQ++V TVAF
Sbjct: 237 KSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAF 296
Query: 376 GMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADV 424
GMGINKP+VRFV+H + +++E+YYQE+GRAGRDGLP+E +LF+ PAD+
Sbjct: 297 GMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADM 345
>DICTYBASE|DDB_G0272384 [details] [associations]
symbol:DDB_G0272384 "Bloom syndrome-like protein"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0272384 GO:GO:0005524
GO:GO:0005634 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 EMBL:AAFI02000008 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514 KO:K10901
TIGRFAMs:TIGR00614 RefSeq:XP_645178.2 ProteinModelPortal:Q55A06
EnsemblProtists:DDB0233085 GeneID:8618350 KEGG:ddi:DDB_G0272384
OMA:YQQTGRA Uniprot:Q55A06
Length = 973
Score = 807 (289.1 bits), Expect = 2.2e-80, P = 2.2e-80
Identities = 152/355 (42%), Positives = 235/355 (66%)
Query: 74 EWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVL-REG 132
EW + ++FG +R Q E IN++L RD V + GGGKSLC+Q+P+++ G
Sbjct: 461 EWHELVETCNRDIFGNKEFRNLQIEAINSILHDRDTFVSLPTGGGKSLCFQIPSIVDHRG 520
Query: 133 IALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEG-ELKMLYVTP 191
+ V+SPLL+L+QDQV L +LGIPA + S+ S+ + + + L GE +LK++Y+TP
Sbjct: 521 VTFVISPLLALMQDQVHKLKSLGIPAESINSSGSQRENRDVLDQLLNGETCKLKLIYITP 580
Query: 192 EKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMM 251
E++++S+ F+ L++ + GRL + +DEAHC S+WGH FRP Y+ + + +FP VP+
Sbjct: 581 ERLAQSE-FLHLLDQLYDQGRLRRLVVDEAHCISEWGHSFRPKYRLISTFRDRFPSVPIS 639
Query: 252 ALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQES 311
A TA+AT V+ D+ L + I S+ RPNL Y VR+K S + ++ +I +I
Sbjct: 640 AFTASATPNVEIDIKNSLKMVNPITINSSFLRPNLLYQVRQKQSDEESLLKDIYNFISFK 699
Query: 312 YPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVG 371
YPNS +GI+YC + +ECE VA L +RG+S+++YHA + R K+ W+ + +++
Sbjct: 700 YPNS-TGIIYCATVRECEIVADYLSERGLSSNFYHAKLSNTQRSKLQKDWTNGEFKIVCT 758
Query: 372 TVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPR 426
T+AFGMGI+K D RFVIHHS+ +S+E+YYQ++GRAGRDG S+CLLF+ +D+ R
Sbjct: 759 TIAFGMGIDKGDTRFVIHHSMPQSMESYYQQTGRAGRDGKHSDCLLFYNKSDLMR 813
>TIGR_CMR|SO_4241 [details] [associations]
symbol:SO_4241 "ATP-dependent DNA helicase RecQ"
species:211586 "Shewanella oneidensis MR-1" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR006293
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043
HOGENOM:HOG000044388 KO:K03654 TIGRFAMs:TIGR01389 OMA:YCLSRAK
RefSeq:NP_719768.1 ProteinModelPortal:Q8E9M8 SMR:Q8E9M8
GeneID:1171845 KEGG:son:SO_4241 PATRIC:23528122
ProtClustDB:CLSK907564 Uniprot:Q8E9M8
Length = 607
Score = 769 (275.8 bits), Expect = 2.5e-79, Sum P(2) = 2.5e-79
Identities = 161/354 (45%), Positives = 226/354 (63%)
Query: 86 VFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQ 145
VFG +R Q+E+I V G D LVIM GGGKSLCYQLPA++ GI +VVSPL+SL++
Sbjct: 20 VFGYRDFRDGQREVIERVCRGEDCLVIMPTGGGKSLCYQLPALMMHGITIVVSPLISLMK 79
Query: 146 DQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLE 205
DQV L G+ A L S+ +E + + L GE LK+LYV+PE++ + F+ +++
Sbjct: 80 DQVDSLLQTGVNAAYLNSSQPRELSLEVLRQLHLGE--LKLLYVSPERLLTAD-FIERMQ 136
Query: 206 KCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDL 265
LS+ +IDEAHC SQWGHDFRP+Y LG LK FP VPMMALTATA Q + ++
Sbjct: 137 SLP----LSMFAIDEAHCISQWGHDFRPEYAALGQLKQLFPHVPMMALTATADQATRQNI 192
Query: 266 MEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSR 325
E L I K +S+ +RPN+ Y V EK + +++ +++ + N SGI+YC SR
Sbjct: 193 CERLGINP-FKLLSSFDRPNIRYTVAEKLNAA----NQLRQFLLQQ--NGSSGIIYCSSR 245
Query: 326 KECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVR 385
+ ++VA+ L +G A YHA M R +V + K+++ ++V TVAFGMGINK +VR
Sbjct: 246 RRVDEVAERLTLQGFHAKAYHAGMTPEERGEVQDSFLKDQIDIVVATVAFGMGINKSNVR 305
Query: 386 FVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFYENSGLQ 439
FV+H+ + KS+E YYQE+GRAGRDGL +E + F PAD+ R ++ G Q
Sbjct: 306 FVVHYDIPKSIEAYYQETGRAGRDGLEAEAFMLFDPADIGRVRHLIEQSEPGPQ 359
Score = 47 (21.6 bits), Expect = 2.5e-79, Sum P(2) = 2.5e-79
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 600 VLSSQLIRLISARKPSTMEEASSNHLEKIIGKLKT 634
+L+ I+L S ++ +T N+ K+ +LKT
Sbjct: 508 MLAEPRIQLTSIKRKTTQSRVPLNYDRKLFARLKT 542
>TIGR_CMR|CBU_0472 [details] [associations]
symbol:CBU_0472 "ATP-dependent DNA helicase RecQ"
species:227377 "Coxiella burnetii RSA 493" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR006293
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043
HOGENOM:HOG000044388 KO:K03654 TIGRFAMs:TIGR01389 OMA:YCLSRAK
RefSeq:NP_819507.1 ProteinModelPortal:Q83E59 SMR:Q83E59
GeneID:1208356 KEGG:cbu:CBU_0472 PATRIC:17929635
ProtClustDB:CLSK914091 BioCyc:CBUR227377:GJ7S-469-MONOMER
Uniprot:Q83E59
Length = 601
Score = 760 (272.6 bits), Expect = 2.5e-79, Sum P(2) = 2.5e-79
Identities = 156/358 (43%), Positives = 232/358 (64%)
Query: 78 RADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVV 137
+A +V FG +R Q++IIN+V++G D V+M GGGKSLCYQ+PA++REG+ +VV
Sbjct: 4 KALEVLRQTFGYENFRPLQEKIINSVIAGEDNFVLMPTGGGKSLCYQIPALVREGVGIVV 63
Query: 138 SPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKS 197
SPL+SL+QDQV L A G A + ST ++ + + L E L +LY+ PE++ +
Sbjct: 64 SPLISLMQDQVQALNANGAAAALYNSTLTEAEARKNLARLHNNE--LDLLYIAPERLM-T 120
Query: 198 KRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATA 257
+ F+S+L + +L+L++IDEAHC SQWGHDFRP+Y LG L+ FP VP +ALTATA
Sbjct: 121 ESFLSRLREV----KLALVAIDEAHCVSQWGHDFRPEYLRLGELREYFPKVPFIALTATA 176
Query: 258 TQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSES 317
++ + D+++ L + K +++ NRPN+ Y + EK +++ ++++ ++
Sbjct: 177 DKQTRQDILQRLRLTKANVHIASFNRPNIRYTLLEKQKS----YNQLVNFLKDR--KADF 230
Query: 318 GIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGM 377
GIVYC SR E+VA +L+ G SA YHA + R K + ++ + +IV T+AFGM
Sbjct: 231 GIVYCLSRNRVEEVAAKLQADGYSALPYHAGLPAAQRGKTQEAFQRDDVNIIVATIAFGM 290
Query: 378 GINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFYEN 435
GI+KP+VRFV+H+ L K +E YYQE+GRAGRDGLPSE LL + D+ S F EN
Sbjct: 291 GIDKPNVRFVVHYDLPKHIEGYYQETGRAGRDGLPSEALLLYGLRDIAVIKS--FIEN 346
Score = 56 (24.8 bits), Expect = 2.5e-79, Sum P(2) = 2.5e-79
Identities = 30/106 (28%), Positives = 48/106 (45%)
Query: 546 GKKIIKLEISSVQKNTADNK-KSTKRSLTSSALE---FE-LDELRKELASISGGILPHSV 600
GK+ + L + N K K+ K + ++S + FE L ELRK +A S + P +
Sbjct: 496 GKETLILAKPREKYNVLKKKYKAAKANSSASPYDAALFEKLRELRKAIARESR-VAPFII 554
Query: 601 LS-SQLIRLISARKPSTMEEASSNHLEKIIGKLKTGKYGSRILEVI 645
S + L+ + S S E + N +G+ K YG L +I
Sbjct: 555 FSDASLVEMASRLPVSDSEFLAING----VGQKKLENYGKLFLHLI 596
>TAIR|locus:2127998 [details] [associations]
symbol:RecQl3 "AT4G35740" species:3702 "Arabidopsis
thaliana" [GO:0005524 "ATP binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS;IDA] [GO:0008152 "metabolic process"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IDA]
[GO:0009378 "four-way junction helicase activity" evidence=IDA]
[GO:0036310 "annealing helicase activity" evidence=IDA] [GO:0043138
"3'-5' DNA helicase activity" evidence=IDA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0046872
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
EMBL:AL161588 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
eggNOG:COG0514 KO:K10901 TIGRFAMs:TIGR00614 GO:GO:0036310
GO:GO:0009378 GO:GO:0008026 EMBL:AL031135 GO:GO:0043138 PIR:T04679
HSSP:P15043 EMBL:AJ404472 EMBL:AK229155 IPI:IPI00541767
IPI:IPI00545081 RefSeq:NP_195299.2 RefSeq:NP_849500.1
UniGene:At.20216 ProteinModelPortal:Q9FT72 SMR:Q9FT72 IntAct:Q9FT72
PaxDb:Q9FT72 PRIDE:Q9FT72 EnsemblPlants:AT4G35740.1 GeneID:829727
KEGG:ath:AT4G35740 TAIR:At4g35740 HOGENOM:HOG000239549
InParanoid:Q9FT72 OMA:YEVRYKD PhylomeDB:Q9FT72
ProtClustDB:CLSN2680292 Genevestigator:Q9FT72 Uniprot:Q9FT72
Length = 713
Score = 779 (279.3 bits), Expect = 2.1e-77, P = 2.1e-77
Identities = 156/333 (46%), Positives = 217/333 (65%)
Query: 87 FGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQD 146
FG +R Q E I AV+SGRD +M GGGKS+CYQ+PA+ + GI LVVSPL++L+++
Sbjct: 32 FGHADFRGKQLEAIQAVVSGRDCFCLMPTGGGKSICYQIPALAKPGIVLVVSPLIALMEN 91
Query: 147 QVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEK 206
QVM L GI A L+ST + + I++ L+ G+ +++LYVTPE I+ +K FM KL K
Sbjct: 92 QVMALKEKGIAAEYLSSTQATHVKNKIHEDLDSGKPSVRLLYVTPELIA-TKGFMLKLRK 150
Query: 207 CHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLM 266
H G L+LI+IDEAHC S WGHDFRP Y+ L L+ DVP++ALTATA KVQ D++
Sbjct: 151 LHSRGLLNLIAIDEAHCISSWGHDFRPSYRQLSTLRDSLADVPVLALTATAAPKVQKDVI 210
Query: 267 EMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRK 326
+ L++R + S+ NRPN+FY VR K + D + ++ + I+YC R
Sbjct: 211 DSLNLRNPLVLKSSFNRPNIFYEVRYKDLLDNAYTD-LGNLLKSC--GNICAIIYCLERT 267
Query: 327 ECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRF 386
C+ ++ L GIS+ YHA ++ R V W +K Q+IV TVAFGMGI+K DVR
Sbjct: 268 TCDDLSVHLSSIGISSAAYHAGLNSKMRSTVLDDWLSSKKQIIVATVAFGMGIDKKDVRM 327
Query: 387 VIHHSLSKSVETYYQESGRAGRDGLPSECLLFF 419
V H ++ KS+E++YQESGRAGRD LPS +L++
Sbjct: 328 VCHFNIPKSMESFYQESGRAGRDQLPSRSVLYY 360
>TAIR|locus:2074429 [details] [associations]
symbol:RECQI1 "RECQ helicase l1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0042631 "cellular response to water deprivation" evidence=IEP]
[GO:0070417 "cellular response to cold" evidence=IEP] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
GO:GO:0070417 GO:GO:0042631 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AC012393 eggNOG:COG0514 KO:K10901
TIGRFAMs:TIGR00614 GO:GO:0008026 HSSP:P15043 HOGENOM:HOG000044388
EMBL:AJ404470 IPI:IPI00524157 RefSeq:NP_187225.2 UniGene:At.10170
UniGene:At.49591 ProteinModelPortal:Q9FT74 SMR:Q9FT74
EnsemblPlants:AT3G05740.1 GeneID:819743 KEGG:ath:AT3G05740
TAIR:At3g05740 InParanoid:Q9FT74 OMA:RFVIHNT PhylomeDB:Q9FT74
ProtClustDB:CLSN2690733 Genevestigator:Q9FT74 Uniprot:Q9FT74
Length = 606
Score = 770 (276.1 bits), Expect = 1.9e-76, P = 1.9e-76
Identities = 155/350 (44%), Positives = 220/350 (62%)
Query: 84 LNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSL 143
L +FG +R Q + A + +D V+M GGGKSLCYQLPA L+ G+ +V+SPLLSL
Sbjct: 199 LVIFGNKVFRPLQHQACRASMERKDCFVLMPTGGGKSLCYQLPATLKAGVTIVISPLLSL 258
Query: 144 IQDQVMCL-AALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMS 202
IQDQ++ L GIPA L S + + + L + K+LYVTPEKI+ S F+
Sbjct: 259 IQDQIVALNLKFGIPATFLNSQQTSSQAAAVLQELRRDNPSCKLLYVTPEKIAGSSSFLE 318
Query: 203 KLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQ 262
L G L+ +DEAHC SQWGHDFRPDY+ LG LK FP VP+MALTATAT+ V
Sbjct: 319 TLRCLDRKGLLAGFVVDEAHCVSQWGHDFRPDYRELGCLKQNFPRVPVMALTATATESVC 378
Query: 263 NDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYC 322
D+++ L I + + +R NL Y V K+ K + ++ + +++ + + +SGIVYC
Sbjct: 379 QDVLKSLRIPRAPVLKMSFDRINLKYEVIVKT---KEPLKQLQELLRDRFKD-QSGIVYC 434
Query: 323 FSRKECEQVAQELRQR-GISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINK 381
S+ EC VA+ L ++ + YYHA + R V +W +++++ T+AFGMGI+K
Sbjct: 435 LSKSECVDVAKFLNEKCKVKTVYYHAGVPAKQRVDVQRKWQTGEVRIVCATIAFGMGIDK 494
Query: 382 PDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMV 431
DVRFVIH++LSK+VE+YYQESGRAGRDGL ++C+ ++ D R M+
Sbjct: 495 ADVRFVIHNTLSKAVESYYQESGRAGRDGLQAQCICLYQKKDFSRVVCML 544
>UNIPROTKB|O34748 [details] [associations]
symbol:recQ "Probable ATP-dependent DNA helicase RecQ"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0043590 "bacterial nucleoid" evidence=IDA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR006293
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0005737 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006310 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0043590 GO:GO:0009432 HSSP:P15043
HOGENOM:HOG000044388 EMBL:AF027868 PIR:F69901 RefSeq:NP_389803.1
ProteinModelPortal:O34748 SMR:O34748
EnsemblBacteria:EBBACT00000001699 GeneID:939671 KEGG:bsu:BSU19220
PATRIC:18975693 GenoList:BSU19220 KO:K03654 OMA:HAAYINS
ProtClustDB:CLSK887416 BioCyc:BSUB:BSU19220-MONOMER
TIGRFAMs:TIGR01389 Uniprot:O34748
Length = 591
Score = 688 (247.2 bits), Expect = 3.2e-75, Sum P(2) = 3.2e-75
Identities = 150/357 (42%), Positives = 224/357 (62%)
Query: 78 RADDVRLNVFGIPAYRANQQEIINAVLSGR-DVLVIMAAGGGKSLCYQLPAVLREGIALV 136
RA + + FG +R+ Q E I V R + IM GGGKS+CYQ+PA++ EG +V
Sbjct: 4 RAQSLLAHYFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIV 63
Query: 137 VSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEK-GEGELKMLYVTPEKIS 195
+SPL+SL++DQV L GI A + ST S ++ IY+ L EG K+ Y+TPE+++
Sbjct: 64 ISPLISLMKDQVDALEEAGINAAYINSTQSNQE---IYERLNGLKEGAYKLFYITPERLT 120
Query: 196 KSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPM-MALT 254
S F+ L+ + L++IDEAHC SQWGHDFRP Y+N+ IL + D P+ MALT
Sbjct: 121 -SIEFIRILQGID----VPLVAIDEAHCISQWGHDFRPSYRNIEILFRELHDKPVIMALT 175
Query: 255 ATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPN 314
ATAT +V +D+ + LHI+K + +R NL + V + + + IDE Y+Q +
Sbjct: 176 ATATPEVHDDICKQLHIQKENTVYTGFSRENLTFKVVKGENKDRF-IDE---YVQNN--R 229
Query: 315 SESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVA 374
E+GIVY +RKE +++ + L++ + A YH + + R++ R+ ++LQV+V T A
Sbjct: 230 HEAGIVYTATRKEADRIYERLKRNQVRAGRYHGGLADDVRKEQQERFLNDELQVMVATSA 289
Query: 375 FGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMV 431
FGMGI+K ++RFV+H + K +E+YYQE+GRAGRDGL SEC+L F P D+ Q ++
Sbjct: 290 FGMGIDKSNIRFVLHAQIPKDMESYYQEAGRAGRDGLASECVLLFSPQDIMVQRFLI 346
Score = 89 (36.4 bits), Expect = 3.2e-75, Sum P(2) = 3.2e-75
Identities = 32/103 (31%), Positives = 54/103 (52%)
Query: 544 SPGKKIIKLEISSVQKNTADNKKSTKRSLTSSALEFE-LDELRKELASISGGILPHSVLS 602
S G+ ++K E+S +K K+ ++T + FE L +RKE+A+ G+ P V S
Sbjct: 490 SKGRNVLKGELSVARKEAL---KAA--AITENDELFERLRMVRKEIAA-EQGVPPFVVFS 543
Query: 603 SQLIRLISARKPSTMEEASSNHLEKIIGKLKTGKYGSRILEVI 645
Q ++ +S ++P +E S K +G+ K KYG L+ I
Sbjct: 544 DQTLKEMSGKQPVNDDELLSI---KGVGEQKRAKYGRLFLQEI 583
Score = 39 (18.8 bits), Expect = 6.0e-70, Sum P(2) = 6.0e-70
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 624 HLEKIIGKLKTGKYGSRILEVISKCGNSEQQHDNNAVSKEEQ 665
H E + + +G + + +CGN + V++E Q
Sbjct: 370 HTEDCLQRFILMYFGEKEPDACGQCGNCTDTRAAHDVTREAQ 411
>RGD|1310823 [details] [associations]
symbol:Recql5 "RecQ protein-like 5" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=IEA;ISO] [GO:0031965 "nuclear membrane"
evidence=IEA;ISO] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 RGD:1310823
GO:GO:0005524 GO:GO:0005730 GO:GO:0031965 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310 EMBL:CH473948
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016591
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
CTD:9400 KO:K10902 OrthoDB:EOG46WZ7X InterPro:IPR010716
Pfam:PF06959 ProDom:PD120154 OMA:DPKIEEF IPI:IPI00364336
RefSeq:NP_001099323.1 UniGene:Rn.198916 Ensembl:ENSRNOT00000007246
GeneID:287834 KEGG:rno:287834 NextBio:627111 Uniprot:D4ACP5
Length = 973
Score = 749 (268.7 bits), Expect = 3.1e-74, P = 3.1e-74
Identities = 166/380 (43%), Positives = 231/380 (60%)
Query: 69 WSGTFEWDSRADDVRLNVFGIPAYRANQQE-IINAVLSG-RDVLVIMAAGGGKSLCYQLP 126
+S F+ + R VFG +++ QE I AV+ G +DV V M G GKSLCYQLP
Sbjct: 6 FSTPFDRERRVRSTLKKVFGFDSFKTPLQESAIMAVVKGDKDVFVCMPTGAGKSLCYQLP 65
Query: 127 AVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKM 186
AVL +GI +VVSPL++LIQDQV L AL + L S S ++ K + LE+ + K+
Sbjct: 66 AVLAKGITIVVSPLIALIQDQVDHLLALKVQVSSLNSKLSVQERKELLSDLERDKPRTKL 125
Query: 187 LYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFP 246
LY+TPE ++ S F L LS + +DEAHC SQWGHDFRPDY LG L+++
Sbjct: 126 LYITPE-MAASASFQPTLNSLLSRNLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLA 184
Query: 247 DVPMMALTATATQKVQNDLMEMLHIRKCI-KFVSTINRPNLFYMVREKSSVGKV---VID 302
P +ALTATAT +VQ D+ LH+++ + F + R NLFY V+ K + V + D
Sbjct: 185 HAPCVALTATATPQVQEDVFAALHLKQPVASFKTPCFRANLFYDVQFKELIPDVYGNLRD 244
Query: 303 EIAKYIQESYPNSES---GIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHM 359
K + + N S GIVYC +R+ CEQ+A EL RG++A YHA + + R +V
Sbjct: 245 FCLKALGQKADNGSSSGCGIVYCRTREACEQLAIELSSRGVNAKAYHAGLKASERTQVQN 304
Query: 360 RWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFF 419
W + K+ VIV T++FGMG++K +VRFV H +++KS+ YYQESGRAGRDG PS C L++
Sbjct: 305 EWMEEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYY 364
Query: 420 RPADVPRQSSMVFYENSGLQ 439
D + S ++ E + LQ
Sbjct: 365 SRNDRDQVSFLIRKELAKLQ 384
>UNIPROTKB|F1NT69 [details] [associations]
symbol:F1NT69 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=IEA] [GO:0031965 "nuclear membrane" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0031965 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016591 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0008026 EMBL:AADN02029969 EMBL:AADN02029968 IPI:IPI00819481
ProteinModelPortal:F1NT69 Ensembl:ENSGALT00000038980
ArrayExpress:F1NT69 Uniprot:F1NT69
Length = 451
Score = 716 (257.1 bits), Expect = 1.2e-73, Sum P(2) = 1.2e-73
Identities = 162/363 (44%), Positives = 221/363 (60%)
Query: 86 VFGIPAYRANQQEIIN-AVLSG-RDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSL 143
VFG +++ + QE AV+ G +DV V M G GKSLCYQLPAVL GI +V+SPL++L
Sbjct: 28 VFGFESFKTSLQESATMAVVRGEKDVFVCMPTGAGKSLCYQLPAVLAVGITIVISPLIAL 87
Query: 144 IQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSK 203
IQDQV L AL I A L S S +++K I L + ++K+LY+TPE + S F
Sbjct: 88 IQDQVDHLLALKIKACSLNSKLSAQEKKTILADLASEKPQIKLLYITPEMAAASS-FQPT 146
Query: 204 LEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQN 263
L LS + IDEAHC SQWGHDFRPDY LG L+T+ P+ P +ALTATAT++VQ+
Sbjct: 147 LNSLVSRNLLSYLIIDEAHCVSQWGHDFRPDYLRLGTLRTRIPNTPCVALTATATKQVQD 206
Query: 264 DLMEMLHIRKCIK-FVSTINRPNLFYMVREKSSVGKVVI---DEIAKYIQESYPN---SE 316
D++ L +++ + F + R NLFY V+ K + D K ++ S
Sbjct: 207 DIVTALKLKQPLATFKTPCFRSNLFYDVQFKELLTDPYANLKDFCLKALEVKNTTGVYSG 266
Query: 317 SGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFG 376
GIVYC R C+Q+A EL RG+ A YHA + R V W + K+ VIV T++FG
Sbjct: 267 CGIVYCRMRDVCDQLAIELSYRGVKAKAYHAGLKAADRTSVQNEWMEEKIPVIVATISFG 326
Query: 377 MGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFYENS 436
MG++K +VRFV H +++KS+ YYQESGRAGRDG PS C L++ D + S ++ E S
Sbjct: 327 MGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSCCRLYYSRNDRDQVSFLIKKELS 386
Query: 437 GLQ 439
+Q
Sbjct: 387 KIQ 389
Score = 46 (21.3 bits), Expect = 1.2e-73, Sum P(2) = 1.2e-73
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 549 IIKLEISSVQKNTADNKKSTKRSLTS-SALEFELDELRKELASIS---GGILP 597
+IK E+S +Q+ K+S K +T+ A+ +EL A+I+ G + P
Sbjct: 380 LIKKELSKIQEKKGTLKESDKSVMTAFDAIVSFCEELGCRHAAIAKYFGDVTP 432
>TIGR_CMR|SPO_0107 [details] [associations]
symbol:SPO_0107 "ATP-dependent DNA helicase RecQ"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00490 SMART:SM00956 GO:GO:0005524
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
GO:GO:0009432 HOGENOM:HOG000044388 KO:K03654 TIGRFAMs:TIGR01389
OMA:YCLSRAK RefSeq:YP_165381.1 ProteinModelPortal:Q5LWQ8
GeneID:3194995 KEGG:sil:SPO0107 PATRIC:23373451
ProtClustDB:CLSK933158 Uniprot:Q5LWQ8
Length = 679
Score = 708 (254.3 bits), Expect = 1.2e-73, Sum P(2) = 1.2e-73
Identities = 153/348 (43%), Positives = 217/348 (62%)
Query: 85 NVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLI 144
+VFG A+R Q+EI AV G +VL IM GGGKSLC+QLPA++REG+ +V+SPL++L+
Sbjct: 10 DVFGFDAFRPGQEEIAQAVAEGENVLAIMPTGGGKSLCFQLPALMREGVTVVISPLIALM 69
Query: 145 QDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKL 204
+DQV L G+ A LTS + E+ + +++ALE G LK+LY+ PE+++ S M L
Sbjct: 70 RDQVRSLQEAGVEAGALTSGNTPEETEAVWQALEAGR--LKLLYMAPERLA-SGAAMGML 126
Query: 205 EKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQND 264
+ G +SLI++DEAHC SQWGHDFRPDY +G L+ VP+ A TATA + Q +
Sbjct: 127 RRI---G-VSLIAVDEAHCVSQWGHDFRPDYLRIGELRRAL-GVPLAAFTATADAETQAE 181
Query: 265 LMEMLHI-RKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCF 323
++ L + F+ +RPN+ K S + ++D +SGIVYC
Sbjct: 182 IVAKLFDGEEPRSFLRGFDRPNIHLAFAAKDSPRRQILDFAGAR------RGQSGIVYCG 235
Query: 324 SRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPD 383
+R + E +AQ LR+ G SA +YH M+ R V R+++ ++V TVAFGMGI+KPD
Sbjct: 236 TRAKTETLAQALREDGHSACHYHGGMEAEDRRIVETRFAREDGLIVVATVAFGMGIDKPD 295
Query: 384 VRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMV 431
+R+V H L KS+E YYQE GRAGRDG P+E L F P D+ + S +
Sbjct: 296 IRWVAHADLPKSIEAYYQEIGRAGRDGGPAETLTLFGPDDIRLRRSQI 343
Score = 54 (24.1 bits), Expect = 1.2e-73, Sum P(2) = 1.2e-73
Identities = 27/118 (22%), Positives = 56/118 (47%)
Query: 542 PFSPGKKIIKLEISSVQKNTADNKKSTKRSLTS--SALEFELDELRKELASISGGILPHS 599
P G+ I+L +V K A + + K + + L L R+ LA + + +
Sbjct: 491 PILRGEAGIELRKDTVSK--AARRPAVKAMVNDEDAPLLSALKAKRRALAE-AARVPAYV 547
Query: 600 VLSSQLIRLISARKPSTMEEASSNHLEKI--IGKLKTGKYGSRILEVISKCGNSEQQH 655
+ + + ++ ++P+++++ + +I IG K +YG+ LEV+S G +E H
Sbjct: 548 IFPDRTLIEMAEKRPASLDQ-----MARIGGIGAKKLERYGAMFLEVVS--GAAEMLH 598
Score = 44 (20.5 bits), Expect = 1.4e-72, Sum P(2) = 1.4e-72
Identities = 18/65 (27%), Positives = 34/65 (52%)
Query: 584 LRKELASISGGI-LPHSVLSSQLIRLISARKPSTMEEASSNHLEKIIGKLKTGKYGSRIL 642
++ +LA GI P S +SQL ++ R P ++ S LE ++G + ++G L
Sbjct: 619 VQADLARGPDGIDKPLSCSASQLAKVAQMR-P---DDRSG--LEALLGDRRWERFGEAFL 672
Query: 643 EVISK 647
+V+ +
Sbjct: 673 DVLGQ 677
>UNIPROTKB|F1NWK5 [details] [associations]
symbol:F1NWK5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=IEA] [GO:0031965 "nuclear membrane" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0031965 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016591 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0008026 InterPro:IPR010716 Pfam:PF06959 ProDom:PD120154
OMA:DPKIEEF EMBL:AADN02029969 EMBL:AADN02029968 IPI:IPI00812208
Ensembl:ENSGALT00000003814 ArrayExpress:F1NWK5 Uniprot:F1NWK5
Length = 1023
Score = 716 (257.1 bits), Expect = 1.4e-73, Sum P(2) = 1.4e-73
Identities = 162/363 (44%), Positives = 221/363 (60%)
Query: 86 VFGIPAYRANQQEIIN-AVLSG-RDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSL 143
VFG +++ + QE AV+ G +DV V M G GKSLCYQLPAVL GI +V+SPL++L
Sbjct: 28 VFGFESFKTSLQESATMAVVRGEKDVFVCMPTGAGKSLCYQLPAVLAVGITIVISPLIAL 87
Query: 144 IQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSK 203
IQDQV L AL I A L S S +++K I L + ++K+LY+TPE + S F
Sbjct: 88 IQDQVDHLLALKIKACSLNSKLSAQEKKTILADLASEKPQIKLLYITPEMAAASS-FQPT 146
Query: 204 LEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQN 263
L LS + IDEAHC SQWGHDFRPDY LG L+T+ P+ P +ALTATAT++VQ+
Sbjct: 147 LNSLVSRNLLSYLIIDEAHCVSQWGHDFRPDYLRLGTLRTRIPNTPCVALTATATKQVQD 206
Query: 264 DLMEMLHIRKCIK-FVSTINRPNLFYMVREKSSVGKVVI---DEIAKYIQESYPN---SE 316
D++ L +++ + F + R NLFY V+ K + D K ++ S
Sbjct: 207 DIVTALKLKQPLATFKTPCFRSNLFYDVQFKELLTDPYANLKDFCLKALEVKNTTGVYSG 266
Query: 317 SGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFG 376
GIVYC R C+Q+A EL RG+ A YHA + R V W + K+ VIV T++FG
Sbjct: 267 CGIVYCRMRDVCDQLAIELSYRGVKAKAYHAGLKAADRTSVQNEWMEEKIPVIVATISFG 326
Query: 377 MGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFYENS 436
MG++K +VRFV H +++KS+ YYQESGRAGRDG PS C L++ D + S ++ E S
Sbjct: 327 MGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSCCRLYYSRNDRDQVSFLIKKELS 386
Query: 437 GLQ 439
+Q
Sbjct: 387 KIQ 389
Score = 49 (22.3 bits), Expect = 1.4e-73, Sum P(2) = 1.4e-73
Identities = 23/88 (26%), Positives = 40/88 (45%)
Query: 549 IIKLEISSVQKNTADNKKSTKRSLTS-SALEFELDELRKELASIS---GGILPHSVLSSQ 604
+IK E+S +Q+ K+S K +T+ A+ +EL A+I+ G + P
Sbjct: 380 LIKKELSKIQEKKGTLKESDKSVMTAFDAIVSFCEELGCRHAAIAKYFGDVTPPCNKCCD 439
Query: 605 LIRLISA--RKPSTMEEASSNHLEKIIG 630
+ A R+ +E S+N + IG
Sbjct: 440 YCKNPEAVKRQLEALERCSNNWSKTCIG 467
>UNIPROTKB|F1PAG8 [details] [associations]
symbol:RECQL5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
CTD:9400 KO:K10902 InterPro:IPR010716 Pfam:PF06959 ProDom:PD120154
OMA:DPKIEEF EMBL:AAEX03006295 RefSeq:XP_540436.2
Ensembl:ENSCAFT00000007842 GeneID:483317 KEGG:cfa:483317
Uniprot:F1PAG8
Length = 989
Score = 720 (258.5 bits), Expect = 2.5e-73, Sum P(2) = 2.5e-73
Identities = 161/376 (42%), Positives = 227/376 (60%)
Query: 73 FEWDSRADDVRLNVFGIPAYRANQQEIIN-AVLSG-RDVLVIMAAGGGKSLCYQLPAVLR 130
F+ + R VFG +++ QE AV+ G +DV V M G GKSLCYQLPA+L
Sbjct: 6 FDRERRVRSTLKKVFGFDSFKTPLQESATMAVVRGDKDVFVCMPTGAGKSLCYQLPALLA 65
Query: 131 EGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVT 190
+GI +VVSPL++LIQDQV L AL + L S S +++K + LE+ + + K+LY+T
Sbjct: 66 KGITIVVSPLIALIQDQVDHLLALKVRVSSLNSKLSAQEKKELLSDLEREKPQTKLLYIT 125
Query: 191 PEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPM 250
PE ++ S F L LS + +DEAHC SQWGHDFRPDY LG L+++ P
Sbjct: 126 PE-MAASPSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGTLRSRLAHAPC 184
Query: 251 MALTATATQKVQNDLMEMLHIRKCIK-FVSTINRPNLFYMVREKSSVGKV---VIDEIAK 306
+ALTATAT +VQ D+ LH+++ + F + R NLFY V+ K + + D K
Sbjct: 185 IALTATATLQVQEDVFAALHLKQPVATFKTPCFRANLFYDVQFKELLSDPYGNLRDFCLK 244
Query: 307 YIQESYPN---SESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSK 363
+ + S GIVYC +R+ CEQ+A EL RG++A YHA + + R V W +
Sbjct: 245 ALGQKADKGLLSGCGIVYCRTREACEQLATELSYRGVNAKAYHAGLKASERTLVQNEWME 304
Query: 364 NKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPAD 423
K+ VIV T++FGMG++K +VRFV H +++KS+ YYQESGRAGRDG PS C L++ D
Sbjct: 305 EKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRND 364
Query: 424 VPRQSSMVFYENSGLQ 439
+ S ++ E + LQ
Sbjct: 365 RDQVSFLIRKEVAKLQ 380
Score = 39 (18.8 bits), Expect = 2.5e-73, Sum P(2) = 2.5e-73
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 648 CGNSEQQHDNNAVSKEEQGRDARASKR 674
CG S + + SK ARASK+
Sbjct: 720 CGGSSPEKTGKSPSKGGPLAKARASKK 746
>TIGR_CMR|BA_2818 [details] [associations]
symbol:BA_2818 "ATP-dependent DNA helicase RecQ"
species:198094 "Bacillus anthracis str. Ames" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006268
"DNA unwinding involved in replication" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] [GO:0006310 "DNA recombination"
evidence=ISS] [GO:0009378 "four-way junction helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00490 SMART:SM00956 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0005622 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80 TIGRFAMs:TIGR00614
GO:GO:0009432 HSSP:P15043 HOGENOM:HOG000044388 KO:K03654
TIGRFAMs:TIGR01389 OMA:YCLSRAK RefSeq:NP_845165.1
RefSeq:YP_019461.1 RefSeq:YP_028886.1 ProteinModelPortal:Q81PI6
DNASU:1085972 EnsemblBacteria:EBBACT00000011651
EnsemblBacteria:EBBACT00000017455 EnsemblBacteria:EBBACT00000023670
GeneID:1085972 GeneID:2814571 GeneID:2847794 KEGG:ban:BA_2818
KEGG:bar:GBAA_2818 KEGG:bat:BAS2627 ProtClustDB:CLSK916814
BioCyc:BANT260799:GJAJ-2691-MONOMER
BioCyc:BANT261594:GJ7F-2786-MONOMER Uniprot:Q81PI6
Length = 705
Score = 655 (235.6 bits), Expect = 1.8e-72, Sum P(2) = 1.8e-72
Identities = 143/357 (40%), Positives = 221/357 (61%)
Query: 77 SRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALV 136
++A ++ + FG ++R Q E I VL G+D + IM GGGKS+CYQ+PA++ EG LV
Sbjct: 3 TKAQELLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLV 62
Query: 137 VSPLLSLIQDQVMCLAALGIPAHMLTSTTS-KEDEKFIYKALEKGEGELKMLYVTPEKIS 195
+SPL+SL++DQV L GI A + S+ S E + I L K +G K+ YV PE++
Sbjct: 63 ISPLISLMKDQVDTLVQNGISATYINSSISITEANQRIQ--LAK-QGHYKLFYVAPERLD 119
Query: 196 KSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPM-MALT 254
S F+ +L ++ +I+IDEAHC SQWGHDFRP Y ++ + P+ P+ +ALT
Sbjct: 120 -SMEFVDQLIDM----KIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEEPLVLALT 174
Query: 255 ATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPN 314
ATAT +V++D+ L I + ++T R NL + V + + D YI+++
Sbjct: 175 ATATPQVRDDICNTLGINQENTIMTTFERENLSFSVIKGQDRNAYLAD----YIRQN--Q 228
Query: 315 SESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVA 374
ESGI+Y +RK +Q+ ++L + G+S YHA M + R + + ++++ V+V T A
Sbjct: 229 KESGIIYAATRKVVDQLYEDLMKAGVSVSKYHAGMSDHDRNEQQELFLRDEVSVMVATSA 288
Query: 375 FGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMV 431
FGMGI+K ++R+VIH+ L K++E+YYQE+GRAGRDGL S C+L + DV Q ++
Sbjct: 289 FGMGIDKSNIRYVIHYQLPKNMESYYQEAGRAGRDGLDSACILLYASQDVQVQRFLI 345
Score = 96 (38.9 bits), Expect = 1.8e-72, Sum P(2) = 1.8e-72
Identities = 35/128 (27%), Positives = 63/128 (49%)
Query: 522 EEIEQLVLQLIIDRVL-VRIGPFSPGKKIIKL--EISSVQKNTADNKKSTKRSLTSSALE 578
+E+ + + LI D ++ V G + P K+ + E+ ++N ++ R +
Sbjct: 460 KEVSEFIEFLISDELIAVEHGTY-PTLKVTEKGKEVLLGKENVLRKERVETRQIVQDHPL 518
Query: 579 FE-LDELRKELASISGGILPHSVLSSQLIRLISARKPSTMEEASSNHLEKIIGKLKTGKY 637
FE L E+RKE+A G+ P + S Q ++ + A+ P + E + K IG+ K KY
Sbjct: 519 FEVLREVRKEIAQ-GEGVPPFVIFSDQTLKDMCAKMPQSDSELLT---VKGIGEHKLVKY 574
Query: 638 GSRILEVI 645
GS L+ +
Sbjct: 575 GSHFLQAV 582
Score = 45 (20.9 bits), Expect = 4.2e-67, Sum P(2) = 4.2e-67
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 624 HLEKIIGKLKTGKYGSRILEVISKCGNSEQQHDNNAVSKEEQ 665
H E+ + +G E +CGN ++ V++E Q
Sbjct: 369 HTEQCLQSFILQYFGEEPKEDCGRCGNCTDNRESIDVTRESQ 410
>UNIPROTKB|E1BKM5 [details] [associations]
symbol:RECQL5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0031965 "nuclear membrane" evidence=IEA] [GO:0016591
"DNA-directed RNA polymerase II, holoenzyme" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0031965
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016591
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
CTD:9400 KO:K10902 InterPro:IPR010716 Pfam:PF06959 ProDom:PD120154
EMBL:DAAA02049519 IPI:IPI00698201 RefSeq:NP_001179255.1
UniGene:Bt.62459 Ensembl:ENSBTAT00000015555 GeneID:512590
KEGG:bta:512590 OMA:DPKIEEF NextBio:20870462 Uniprot:E1BKM5
Length = 987
Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
Identities = 162/378 (42%), Positives = 229/378 (60%)
Query: 70 SGTFEWDSRADDVRLNVFGIPAYRANQQE-IINAVLSG-RDVLVIMAAGGGKSLCYQLPA 127
S F+ + R VFG +++ QE I AV+ G +DV V M G GKSLCYQLPA
Sbjct: 6 SSPFDPERRVRSTLKKVFGFDSFKTPLQEKAIMAVVKGDKDVFVCMPTGAGKSLCYQLPA 65
Query: 128 VLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKML 187
+L +GI +VVSPL++LIQDQV L AL + L S S ++ K + LE+ + + K+L
Sbjct: 66 LLAKGITIVVSPLIALIQDQVDHLLALKVRVSSLNSKLSVQERKELLSDLEQEKPQTKLL 125
Query: 188 YVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPD 247
Y+TPE ++ S F L LS + +DEAHC SQWGHDFRPDY LG L+++ D
Sbjct: 126 YITPE-MAASTSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLAD 184
Query: 248 VPMMALTATATQKVQNDLMEMLHIRKCIK-FVSTINRPNLFYMVREKSSVGKV---VIDE 303
P +ALTATAT +V+ D+ LH+++ + F + R NLFY V+ K + + D
Sbjct: 185 APCVALTATATPQVREDVFAALHLKQPVATFKTPCFRANLFYDVQFKELLPDPYGNLRDF 244
Query: 304 IAKYIQESYPNSESG--IVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRW 361
K + + SG I+YC +R+ CEQ+A EL RG++A YHA + R V W
Sbjct: 245 CLKALGQKADKGLSGCGIIYCRTREACEQLATELSYRGVNAKAYHAGLKAPERTLVQNEW 304
Query: 362 SKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRP 421
+ K+ VIV T++FGMG++K +VRFV H +++KS+ YYQESGRAGRDG PS C L++
Sbjct: 305 MEEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSR 364
Query: 422 ADVPRQSSMVFYENSGLQ 439
+D + S ++ E + LQ
Sbjct: 365 SDRDQVSFLIRKEVAKLQ 382
>UNIPROTKB|J3KTQ2 [details] [associations]
symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614
GO:GO:0008026 EMBL:AC087749 HGNC:HGNC:9950 ChiTaRS:RECQL5
Ensembl:ENST00000578201 Uniprot:J3KTQ2
Length = 480
Score = 719 (258.2 bits), Expect = 4.8e-71, P = 4.8e-71
Identities = 163/375 (43%), Positives = 226/375 (60%)
Query: 73 FEWDSRADDVRLNVFGIPAYRANQQEIIN-AVLSG-RDVLVIMAAGGGKSLCYQLPAVLR 130
F+ + R VFG +++ QE AV+ G +DV V M G GKSLCYQLPA+L
Sbjct: 10 FDPERRVRSTLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALLA 69
Query: 131 EGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVT 190
+GI +VVSPL++LIQDQV L L + L S S ++ K + LE+ + + K+LY+T
Sbjct: 70 KGITIVVSPLIALIQDQVDHLLTLKVRVSSLNSKLSAQERKELLADLEREKPQTKILYIT 129
Query: 191 PEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPM 250
PE ++ S F L LS + +DEAHC SQWGHDFRPDY LG L+++ P
Sbjct: 130 PE-MAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPC 188
Query: 251 MALTATATQKVQNDLMEMLHIRKCIKFVST-INRPNLFYMVREKSSVGKV---VIDEIAK 306
+ALTATAT +VQ D+ LH++K + T R NLFY V+ K + + D K
Sbjct: 189 VALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLK 248
Query: 307 YI-QESYPN-SESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKN 364
+ QE+ S GIVYC +R+ CEQ+A EL RG++A YHA + + R V W +
Sbjct: 249 ALGQEADKGLSGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEE 308
Query: 365 KLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADV 424
K+ VIV T++FGMG++K +VRFV H +++KS+ YYQESGRAGRDG PS C L++ D
Sbjct: 309 KVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDR 368
Query: 425 PRQSSMVFYENSGLQ 439
+ S ++ E + LQ
Sbjct: 369 DQVSFLIRKEVAKLQ 383
>UNIPROTKB|O94762 [details] [associations]
symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003678 "DNA helicase activity"
evidence=NAS] [GO:0005654 "nucleoplasm" evidence=NAS] [GO:0005737
"cytoplasm" evidence=IDA;NAS] [GO:0006259 "DNA metabolic process"
evidence=NAS] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=IDA] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0032508 "DNA duplex unwinding" evidence=NAS;TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0031965 "nuclear membrane" evidence=IDA] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0005730
GO:GO:0006281 GO:GO:0031965 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0016591 eggNOG:COG0514
TIGRFAMs:TIGR00614 GO:GO:0008026 EMBL:AB006533 EMBL:AF135183
EMBL:AB042823 EMBL:AB042824 EMBL:AB042825 EMBL:BC016911
EMBL:AL136869 IPI:IPI00220819 IPI:IPI00220820 IPI:IPI01015246
RefSeq:NP_001003715.1 RefSeq:NP_001003716.1 RefSeq:NP_004250.4
UniGene:Hs.632229 ProteinModelPortal:O94762 SMR:O94762
DIP:DIP-32964N IntAct:O94762 MINT:MINT-1378331 STRING:O94762
PhosphoSite:O94762 PaxDb:O94762 PRIDE:O94762
Ensembl:ENST00000317905 Ensembl:ENST00000340830
Ensembl:ENST00000420326 Ensembl:ENST00000584999 GeneID:9400
KEGG:hsa:9400 UCSC:uc002joz.4 UCSC:uc002jpb.2 UCSC:uc010dgl.3
CTD:9400 GeneCards:GC17M073622 HGNC:HGNC:9950 HPA:HPA029970
HPA:HPA029971 MIM:603781 neXtProt:NX_O94762 PharmGKB:PA34317
HOGENOM:HOG000206773 HOVERGEN:HBG057065 InParanoid:O94762 KO:K10902
OrthoDB:EOG46WZ7X PhylomeDB:O94762 ChiTaRS:RECQL5 GenomeRNAi:9400
NextBio:35211 ArrayExpress:O94762 Bgee:O94762 CleanEx:HS_RECQL5
Genevestigator:O94762 GermOnline:ENSG00000108469 InterPro:IPR010716
Pfam:PF06959 ProDom:PD120154 Uniprot:O94762
Length = 991
Score = 719 (258.2 bits), Expect = 4.8e-71, P = 4.8e-71
Identities = 163/375 (43%), Positives = 226/375 (60%)
Query: 73 FEWDSRADDVRLNVFGIPAYRANQQEIIN-AVLSG-RDVLVIMAAGGGKSLCYQLPAVLR 130
F+ + R VFG +++ QE AV+ G +DV V M G GKSLCYQLPA+L
Sbjct: 10 FDPERRVRSTLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALLA 69
Query: 131 EGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVT 190
+GI +VVSPL++LIQDQV L L + L S S ++ K + LE+ + + K+LY+T
Sbjct: 70 KGITIVVSPLIALIQDQVDHLLTLKVRVSSLNSKLSAQERKELLADLEREKPQTKILYIT 129
Query: 191 PEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPM 250
PE ++ S F L LS + +DEAHC SQWGHDFRPDY LG L+++ P
Sbjct: 130 PE-MAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPC 188
Query: 251 MALTATATQKVQNDLMEMLHIRKCIKFVST-INRPNLFYMVREKSSVGKV---VIDEIAK 306
+ALTATAT +VQ D+ LH++K + T R NLFY V+ K + + D K
Sbjct: 189 VALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLK 248
Query: 307 YI-QESYPN-SESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKN 364
+ QE+ S GIVYC +R+ CEQ+A EL RG++A YHA + + R V W +
Sbjct: 249 ALGQEADKGLSGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEE 308
Query: 365 KLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADV 424
K+ VIV T++FGMG++K +VRFV H +++KS+ YYQESGRAGRDG PS C L++ D
Sbjct: 309 KVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDR 368
Query: 425 PRQSSMVFYENSGLQ 439
+ S ++ E + LQ
Sbjct: 369 DQVSFLIRKEVAKLQ 383
>UNIPROTKB|I3LFW3 [details] [associations]
symbol:RECQL5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0031965 "nuclear membrane" evidence=IEA] [GO:0016591
"DNA-directed RNA polymerase II, holoenzyme" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0031965
GO:GO:0003676 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016591 GeneTree:ENSGT00550000074520
TIGRFAMs:TIGR00614 GO:GO:0008026 EMBL:FP565693
Ensembl:ENSSSCT00000025315 OMA:DALIIMP Uniprot:I3LFW3
Length = 432
Score = 715 (256.8 bits), Expect = 1.3e-70, P = 1.3e-70
Identities = 162/375 (43%), Positives = 226/375 (60%)
Query: 73 FEWDSRADDVRLNVFGIPAYRANQQE-IINAVLSG-RDVLVIMAAGGGKSLCYQLPAVLR 130
F+ + R VFG +++ QE I AV+ G +DV V M G GKSLCYQLPA+L
Sbjct: 6 FDPERRVRSTLKKVFGFDSFKTPLQESAIMAVVKGDKDVFVCMPTGAGKSLCYQLPALLA 65
Query: 131 EGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVT 190
+GI +V+SPL++LIQDQV L AL I L S S ++ K + LE+ + K+LY+T
Sbjct: 66 KGITIVISPLIALIQDQVDHLLALKIHVCSLNSKLSAQERKELLSDLEQEKPRTKLLYIT 125
Query: 191 PEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPM 250
PE ++ S F L+ LS + +DEAHC SQWGHDFRPDY LG L+++ P
Sbjct: 126 PE-MAASASFQPTLKSLLARHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLAHAPC 184
Query: 251 MALTATATQKVQNDLMEMLHIRKCIK-FVSTINRPNLFYMVREKSSVGKV---VIDEIAK 306
+ALTATAT +VQ D+ LH+++ + F + R NLFY V+ K + + D K
Sbjct: 185 VALTATATLQVQEDVFAALHLKQPVATFKTPCFRANLFYDVQFKELLSDPYGNLRDFCLK 244
Query: 307 YIQESYPNSESG--IVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKN 364
+ + SG IVYC +R+ CEQ+A EL RG++A YHA + R V W +
Sbjct: 245 ALGQKADKGLSGCGIVYCRTREACEQLAIELSARGVNAKAYHAGLKAAERTLVQNEWMEG 304
Query: 365 KLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADV 424
K+ VIV T++FGMG++K +VRFV H +++KS+ YYQESGRAGRDG PS C L++ D
Sbjct: 305 KVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGRPSWCRLYYSRNDR 364
Query: 425 PRQSSMVFYENSGLQ 439
+ S ++ E + LQ
Sbjct: 365 DQVSFLIRKEVAKLQ 379
>UNIPROTKB|F1RX70 [details] [associations]
symbol:WRN "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00474
SMART:SM00490 SMART:SM00956 GO:GO:0005524 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0005622 GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:FP102088 EMBL:FP565873
Ensembl:ENSSSCT00000017248 Uniprot:F1RX70
Length = 1409
Score = 651 (234.2 bits), Expect = 3.4e-69, Sum P(4) = 3.4e-69
Identities = 147/374 (39%), Positives = 231/374 (61%)
Query: 87 FGIPAYRANQQEIINAVLSGR-DVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQ 145
FG +++ Q ++I+++L R D +V+MA G GKSLC+Q P V GI LV+SPL+SL++
Sbjct: 512 FGHSSFKPVQWKVIHSILEERRDNVVVMATGYGKSLCFQYPPVSVGGIGLVISPLISLME 571
Query: 146 DQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLE 205
DQV+ L IPA L S SK + + ++ G+ +++Y+TPE S + + LE
Sbjct: 572 DQVLQLEMSNIPACFLGSAQSKN----VLEDIKLGK--YRIVYLTPEFCSGNLDLLQHLE 625
Query: 206 KCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDL 265
+ G +++I++DEAHC S+WGHDFR ++ LG LK+ P VP++ALTAT T ++ D+
Sbjct: 626 A--NIG-ITVIAVDEAHCISEWGHDFRNSFRTLGSLKSALPLVPIVALTATGTSSIREDI 682
Query: 266 MEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSE-SG--IVYC 322
+ L ++ + +RPNL+ V K+ G ++ D +Q++ E G I+YC
Sbjct: 683 VRCLKLKDPQITCTGFDRPNLYLEVGRKT--GDILQDLKQFLVQKTSSAWEFEGPTIIYC 740
Query: 323 FSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKP 382
SRK EQV EL++ ++ + YHA + I+ R++VH ++ ++++Q ++ T+AFGMGINK
Sbjct: 741 PSRKMTEQVTAELKKLKLACETYHAGLSIHLRKQVHHKFMRDEIQCVIATIAFGMGINKA 800
Query: 383 DVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQS---SMVFYENSGLQ 439
D+R VIH+ K +E+YYQE GRAGRDGL S C + + PAD+ S + EN L
Sbjct: 801 DIRKVIHYGAPKEIESYYQEIGRAGRDGLQSSCHILWAPADINLNRHLLSEICNENFRLY 860
Query: 440 NLYDIVRYSQYPLH 453
L + + +Y LH
Sbjct: 861 KLKMMAKMEKY-LH 873
Score = 53 (23.7 bits), Expect = 3.4e-69, Sum P(4) = 3.4e-69
Identities = 26/89 (29%), Positives = 43/89 (48%)
Query: 550 IKLEISSVQKNTADNKKST----KRSLTSS--ALEFELDELRKE-LASISGG-ILPHSVL 601
++ + S K + KKS K SL S A+ + L + +K L SI+ ILP + +
Sbjct: 1199 VQTNVFSSAKPQEEQKKSLVMKDKASLLSQSEAITYSLFQEKKMCLKSIAEERILPLTAI 1258
Query: 602 SSQLIRLISARKPSTMEEAS-SNHLEKII 629
L + + A P M+ A + ++KII
Sbjct: 1259 GMHLSQAVKAGYPLDMDRAGLTPEVQKII 1287
Score = 43 (20.2 bits), Expect = 3.4e-69, Sum P(4) = 3.4e-69
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 650 NSEQQHDNNAVSKEEQGRDARASKRTKKEK 679
NSE+ + SKEE + + S +T + K
Sbjct: 1350 NSEESCSDAKRSKEEVSINTKTSSKTSERK 1379
Score = 39 (18.8 bits), Expect = 3.4e-69, Sum P(4) = 3.4e-69
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 488 LLQDIQDNNQRLTMLQLVDKMKIKLKEIDSDLKREEI 524
LL +I + N RL L+++ KM+ K + S R +I
Sbjct: 848 LLSEICNENFRLYKLKMMAKME---KYLHSSRCRRQI 881
>UNIPROTKB|I3LC91 [details] [associations]
symbol:WRN "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
[GO:0051345 "positive regulation of hydrolase activity"
evidence=IEA] [GO:0042981 "regulation of apoptotic process"
evidence=IEA] [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0040009 "regulation of growth rate" evidence=IEA]
[GO:0032403 "protein complex binding" evidence=IEA] [GO:0032389
"MutLalpha complex" evidence=IEA] [GO:0032066 "nucleolus to
nucleoplasm transport" evidence=IEA] [GO:0031297 "replication fork
processing" evidence=IEA] [GO:0030145 "manganese ion binding"
evidence=IEA] [GO:0010259 "multicellular organismal aging"
evidence=IEA] [GO:0010225 "response to UV-C" evidence=IEA]
[GO:0009378 "four-way junction helicase activity" evidence=IEA]
[GO:0009267 "cellular response to starvation" evidence=IEA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006979
"response to oxidative stress" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0005813 "centrosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0001302 "replicative cell aging"
evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA repair"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0000405 "bubble DNA binding" evidence=IEA] [GO:0000403 "Y-form
DNA binding" evidence=IEA] [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00474 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0005813 GO:GO:0005654 GO:GO:0006979
GO:GO:0005730 GO:GO:0042981 GO:GO:0000287 GO:GO:0006284
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145
GO:GO:0006310 GO:GO:0009267 SUPFAM:SSF53098 GO:GO:0040009
GO:GO:0008408 GO:GO:0051345 GO:GO:0010259 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723
GO:GO:0010225 GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0000403 GO:GO:0000731
GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0031297
GO:GO:0032389 GO:GO:0032066 OMA:GIEGDQW EMBL:FP102088 EMBL:FP565873
Ensembl:ENSSSCT00000022344 Uniprot:I3LC91
Length = 1507
Score = 651 (234.2 bits), Expect = 6.6e-69, Sum P(4) = 6.6e-69
Identities = 147/374 (39%), Positives = 231/374 (61%)
Query: 87 FGIPAYRANQQEIINAVLSGR-DVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQ 145
FG +++ Q ++I+++L R D +V+MA G GKSLC+Q P V GI LV+SPL+SL++
Sbjct: 611 FGHSSFKPVQWKVIHSILEERRDNVVVMATGYGKSLCFQYPPVSVGGIGLVISPLISLME 670
Query: 146 DQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLE 205
DQV+ L IPA L S SK + + ++ G+ +++Y+TPE S + + LE
Sbjct: 671 DQVLQLEMSNIPACFLGSAQSKN----VLEDIKLGK--YRIVYLTPEFCSGNLDLLQHLE 724
Query: 206 KCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDL 265
+ G +++I++DEAHC S+WGHDFR ++ LG LK+ P VP++ALTAT T ++ D+
Sbjct: 725 A--NIG-ITVIAVDEAHCISEWGHDFRNSFRTLGSLKSALPLVPIVALTATGTSSIREDI 781
Query: 266 MEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSE-SG--IVYC 322
+ L ++ + +RPNL+ V K+ G ++ D +Q++ E G I+YC
Sbjct: 782 VRCLKLKDPQITCTGFDRPNLYLEVGRKT--GDILQDLKQFLVQKTSSAWEFEGPTIIYC 839
Query: 323 FSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKP 382
SRK EQV EL++ ++ + YHA + I+ R++VH ++ ++++Q ++ T+AFGMGINK
Sbjct: 840 PSRKMTEQVTAELKKLKLACETYHAGLSIHLRKQVHHKFMRDEIQCVIATIAFGMGINKA 899
Query: 383 DVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQS---SMVFYENSGLQ 439
D+R VIH+ K +E+YYQE GRAGRDGL S C + + PAD+ S + EN L
Sbjct: 900 DIRKVIHYGAPKEIESYYQEIGRAGRDGLQSSCHILWAPADINLNRHLLSEICNENFRLY 959
Query: 440 NLYDIVRYSQYPLH 453
L + + +Y LH
Sbjct: 960 KLKMMAKMEKY-LH 972
Score = 53 (23.7 bits), Expect = 6.6e-69, Sum P(4) = 6.6e-69
Identities = 26/89 (29%), Positives = 43/89 (48%)
Query: 550 IKLEISSVQKNTADNKKST----KRSLTSS--ALEFELDELRKE-LASISGG-ILPHSVL 601
++ + S K + KKS K SL S A+ + L + +K L SI+ ILP + +
Sbjct: 1297 VQTNVFSSAKPQEEQKKSLVMKDKASLLSQSEAITYSLFQEKKMCLKSIAEERILPLTAI 1356
Query: 602 SSQLIRLISARKPSTMEEAS-SNHLEKII 629
L + + A P M+ A + ++KII
Sbjct: 1357 GMHLSQAVKAGYPLDMDRAGLTPEVQKII 1385
Score = 43 (20.2 bits), Expect = 6.6e-69, Sum P(4) = 6.6e-69
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 650 NSEQQHDNNAVSKEEQGRDARASKRTKKEK 679
NSE+ + SKEE + + S +T + K
Sbjct: 1448 NSEESCSDAKRSKEEVSINTKTSSKTSERK 1477
Score = 39 (18.8 bits), Expect = 6.6e-69, Sum P(4) = 6.6e-69
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 488 LLQDIQDNNQRLTMLQLVDKMKIKLKEIDSDLKREEI 524
LL +I + N RL L+++ KM+ K + S R +I
Sbjct: 947 LLSEICNENFRLYKLKMMAKME---KYLHSSRCRRQI 980
>UNIPROTKB|E1BEE6 [details] [associations]
symbol:WRN "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
[GO:0051345 "positive regulation of hydrolase activity"
evidence=IEA] [GO:0042981 "regulation of apoptotic process"
evidence=IEA] [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0040009 "regulation of growth rate" evidence=IEA]
[GO:0032403 "protein complex binding" evidence=IEA] [GO:0032389
"MutLalpha complex" evidence=IEA] [GO:0032066 "nucleolus to
nucleoplasm transport" evidence=IEA] [GO:0031297 "replication fork
processing" evidence=IEA] [GO:0030145 "manganese ion binding"
evidence=IEA] [GO:0010259 "multicellular organismal aging"
evidence=IEA] [GO:0010225 "response to UV-C" evidence=IEA]
[GO:0009378 "four-way junction helicase activity" evidence=IEA]
[GO:0009267 "cellular response to starvation" evidence=IEA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006979
"response to oxidative stress" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0005813 "centrosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0001302 "replicative cell aging"
evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA repair"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0000405 "bubble DNA binding" evidence=IEA] [GO:0000403 "Y-form
DNA binding" evidence=IEA] [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00474 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0005813 GO:GO:0005654 GO:GO:0006979
GO:GO:0005730 GO:GO:0042981 GO:GO:0000287 GO:GO:0006284
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145
GO:GO:0006310 GO:GO:0009267 SUPFAM:SSF53098 GO:GO:0040009
GO:GO:0008408 GO:GO:0051345 GO:GO:0010259 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723
GO:GO:0010225 GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0000403 GO:GO:0000731
GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0031297
GO:GO:0032389 GO:GO:0032066 OMA:GIEGDQW EMBL:DAAA02060458
EMBL:DAAA02060459 EMBL:DAAA02060460 EMBL:DAAA02060461
EMBL:DAAA02060462 EMBL:DAAA02060463 EMBL:DAAA02060464
EMBL:DAAA02060465 EMBL:DAAA02060466 EMBL:DAAA02060467
EMBL:DAAA02060468 EMBL:DAAA02060469 EMBL:DAAA02060470
EMBL:DAAA02060471 EMBL:DAAA02060472 EMBL:DAAA02060473
EMBL:DAAA02060474 EMBL:DAAA02060475 EMBL:DAAA02060476
EMBL:DAAA02060477 EMBL:DAAA02060478 EMBL:DAAA02060479
EMBL:DAAA02060480 EMBL:DAAA02060481 EMBL:DAAA02060482
EMBL:DAAA02060483 EMBL:DAAA02060484 EMBL:DAAA02060485
EMBL:DAAA02060486 EMBL:DAAA02060487 EMBL:DAAA02060488
EMBL:DAAA02060489 EMBL:DAAA02060490 EMBL:DAAA02060491
EMBL:DAAA02060492 EMBL:DAAA02060493 EMBL:DAAA02060494
IPI:IPI00920936 Ensembl:ENSBTAT00000028778 Uniprot:E1BEE6
Length = 1404
Score = 657 (236.3 bits), Expect = 4.3e-68, Sum P(4) = 4.3e-68
Identities = 145/342 (42%), Positives = 220/342 (64%)
Query: 87 FGIPAYRANQQEIINAVLSGR-DVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQ 145
FG +++ Q ++I++VL R D +V+M G GKSLC+Q P V GI LV+SPL+SL++
Sbjct: 510 FGHSSFKPVQWKVIHSVLEERRDNVVVMTTGYGKSLCFQYPPVYAGGIGLVISPLISLME 569
Query: 146 DQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLE 205
DQV+ L IPA L S SK + + ++ G+ +++Y+TPE S + + +LE
Sbjct: 570 DQVLQLEISSIPACFLGSAQSKN----VVEDIKLGK--YRIVYLTPEFCSGNLELLRQLE 623
Query: 206 KCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDL 265
+ G ++LI++DEAHC S+WGHDFR +++LG LK +FP VP++ALTATA V+ D+
Sbjct: 624 A--NIG-ITLIAVDEAHCISEWGHDFRNSFRDLGCLKAEFPKVPIVALTATAGSSVREDI 680
Query: 266 MEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSE-SG--IVYC 322
+ L+++ + +RPNL+ V K+ G ++ D + +S E G I+YC
Sbjct: 681 VCCLNLKDPQITCTGFDRPNLYLEVGRKT--GDILQDLKQFLVCKSSSAWEFEGPTIIYC 738
Query: 323 FSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKP 382
SRK EQV EL++ ++ YHA + IN R++VH R+ ++++Q ++ TVAFGMGINK
Sbjct: 739 PSRKMTEQVTAELKKLKLACGTYHAGLSINLRKQVHHRFMRDEIQCVIATVAFGMGINKA 798
Query: 383 DVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADV 424
D+R VIH+ K +E+YYQE GRAGRDGL S C + + PAD+
Sbjct: 799 DIRQVIHYGAPKEMESYYQEIGRAGRDGLQSSCHVLWAPADM 840
Score = 42 (19.8 bits), Expect = 4.3e-68, Sum P(4) = 4.3e-68
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 652 EQQHDNNAVSKEEQGRDARASKRTKKEK 679
E+ N+ +KEE +A+ S K K
Sbjct: 1347 EESSSNSKRTKEEVDTEAKTSSEMSKRK 1374
Score = 39 (18.8 bits), Expect = 4.3e-68, Sum P(4) = 4.3e-68
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 1 METEEILQ-ELENVEAEVRLVQEQIKQL-VDRQD-QLYERQSELKSLLE 46
M+ E+ + ELE + E + + L V ++ QL+E+Q+E K L +
Sbjct: 362 MKQEDGFEDELEGKKLEENTERNCLMSLDVTEEELQLWEQQAEEKHLTD 410
Score = 37 (18.1 bits), Expect = 4.3e-68, Sum P(4) = 4.3e-68
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 488 LLQDIQDNNQRLTMLQLVDKMK 509
LL +I++ RL L+++ KM+
Sbjct: 846 LLSEIRNEKFRLYKLKMMGKME 867
>UNIPROTKB|F1PZR3 [details] [associations]
symbol:WRN "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012337 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00474 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:AAEX03010418 Ensembl:ENSCAFT00000010395
Uniprot:F1PZR3
Length = 1499
Score = 666 (239.5 bits), Expect = 1.9e-67, Sum P(2) = 1.9e-67
Identities = 158/407 (38%), Positives = 244/407 (59%)
Query: 87 FGIPAYRANQQEIINAVLSGR-DVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQ 145
FG +++ Q ++I++VL R D +V+MA G GKSLC+Q P V I LV+SPL+SL++
Sbjct: 602 FGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYSGRIGLVISPLISLME 661
Query: 146 DQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLE 205
DQV+ L IPA L S SK + + ++ G+ +++Y+TPE S + + +L+
Sbjct: 662 DQVLQLKMSNIPACFLGSAQSKN----VLEDIKLGK--YRIVYITPEFCSGNLFLLQQLQ 715
Query: 206 KCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDL 265
G ++LI++DEAHC S+WGHDFR ++ LG LK P VP++ALTATA+ ++ D+
Sbjct: 716 A--DIG-ITLIAVDEAHCISEWGHDFRSSFRTLGSLKAILPSVPIVALTATASSSIREDI 772
Query: 266 MEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSE-SG--IVYC 322
+ L+++ + +RPNL+ VR K+ G ++ D +Q++ E G I+YC
Sbjct: 773 VRCLNLKNPQITCTGFDRPNLYLEVRRKT--GSILQDLDQFLVQKTSSIWEFEGPTIIYC 830
Query: 323 FSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKP 382
SRK EQV ELR+ ++ YHA +DI +R ++H R+ ++++Q +V T+AFGMGINK
Sbjct: 831 PSRKTTEQVTAELRKLKLACGAYHAGLDIKSRREIHHRFMRDEIQCVVATIAFGMGINKA 890
Query: 383 DVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADV---PRQSSMVFYENSGLQ 439
D+R VIH+ K +E+YYQE GRAGRDGL S C + + PAD+ + S + E L
Sbjct: 891 DIRKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHVLWAPADICLNRHRLSEITSEKFRLY 950
Query: 440 NLYDIVRYSQYPLHWNIEKVRLVI--FEKLQQVNLFCMVVLAGHAQC 484
L + + +Y LH + +L++ FE Q V + G QC
Sbjct: 951 KLKMMAKMEKY-LHSTRCRRQLILSHFEDKQLRK--ASVGIMGTEQC 994
Score = 61 (26.5 bits), Expect = 1.9e-67, Sum P(2) = 1.9e-67
Identities = 52/229 (22%), Positives = 89/229 (38%)
Query: 458 KVRLVIFEKLQQVNLFCMVVLAGHAQCIISLLQDIQDNNQRLTMLQLVDKMKIKLKEIDS 517
K+R FE ++++N V G A + LL+ I+ Q + +Q K E
Sbjct: 1249 KMRPTTFENMKRIN----GVSEGKATMLTPLLEVIKHFCQ-INNVQSDLFSSTKPWEEPR 1303
Query: 518 DLKREEIEQLVLQLIIDRVLVRIGPFSPGK-KIIKLEISSVQKNTADNKKSTKRSLTSSA 576
+ EE E L + F K +I L + TA T+
Sbjct: 1304 NSVVEENETCSLS---QSAAITYSLFQEKKMSLISLTEDRIMPLTAVGMHLTQAVKAGCP 1360
Query: 577 LEFELDELRKELASISGGILPHSVLSSQL--IRLISARKPSTMEEASSNHLEKIIGKLKT 634
L+ E L E+ I ++ + ++S + I+LI P ++ + + +I+ K
Sbjct: 1361 LDMERAGLTPEVQKIITDVIRNPPINSDINKIKLIRKLVPENIDTYLIHMVIEILEKDSD 1420
Query: 635 GKYGSRILEVISK----CGNSEQQHDNNAVSKEEQGRDARASKRTKKEK 679
+ S L S NSE+ ++ S+EE G + + S T K K
Sbjct: 1421 NRLLSDGLSCASNRKRYFPNSEENCSSSKRSREEVGTNTKTSSITSKRK 1469
>UNIPROTKB|F1PZR2 [details] [associations]
symbol:WRN "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012337 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00474 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:AAEX03010418 Ensembl:ENSCAFT00000010396
Uniprot:F1PZR2
Length = 1336
Score = 668 (240.2 bits), Expect = 4.2e-67, Sum P(2) = 4.2e-67
Identities = 159/409 (38%), Positives = 247/409 (60%)
Query: 87 FGIPAYRANQQEIINAVLSGR-DVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQ 145
FG +++ Q ++I++VL R D +V+MA G GKSLC+Q P V I LV+SPL+SL++
Sbjct: 521 FGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYSGRIGLVISPLISLME 580
Query: 146 DQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLE 205
DQV+ L IPA L S SK + + ++ G+ +++Y+TPE S + + +L+
Sbjct: 581 DQVLQLKMSNIPACFLGSAQSKN----VLEDIKLGK--YRIVYITPEFCSGNLFLLQQLQ 634
Query: 206 KCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDL 265
G ++LI++DEAHC S+WGHDFR ++ LG LK P VP++ALTATA+ ++ D+
Sbjct: 635 A--DIG-ITLIAVDEAHCISEWGHDFRSSFRTLGSLKAILPSVPIVALTATASSSIREDI 691
Query: 266 MEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNS--E-SG--IV 320
+ L+++ + +RPNL+ VR K+ G ++ D + +++ + NS E G I+
Sbjct: 692 VRCLNLKNPQITCTGFDRPNLYLEVRRKT--GSILQD-LDQFLVQKTRNSIWEFEGPTII 748
Query: 321 YCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGIN 380
YC SRK EQV ELR+ ++ YHA +DI +R ++H R+ ++++Q +V T+AFGMGIN
Sbjct: 749 YCPSRKTTEQVTAELRKLKLACGAYHAGLDIKSRREIHHRFMRDEIQCVVATIAFGMGIN 808
Query: 381 KPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADV---PRQSSMVFYENSG 437
K D+R VIH+ K +E+YYQE GRAGRDGL S C + + PAD+ + S + E
Sbjct: 809 KADIRKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHVLWAPADICLNRHRLSEITSEKFR 868
Query: 438 LQNLYDIVRYSQYPLHWNIEKVRLVI--FEKLQQVNLFCMVVLAGHAQC 484
L L + + +Y LH + +L++ FE Q V + G QC
Sbjct: 869 LYKLKMMAKMEKY-LHSTRCRRQLILSHFEDKQLRK--ASVGIMGTEQC 914
Score = 53 (23.7 bits), Expect = 4.2e-67, Sum P(2) = 4.2e-67
Identities = 19/74 (25%), Positives = 36/74 (48%)
Query: 559 KNTADNKKSTKRSLTSSALEFEL-DELRKELASISGG-ILPHSVLSSQLIRLISARKPST 616
+N+ + T S+A+ + L E + L S++ I+P + + L + + A P
Sbjct: 1222 RNSVVEENETCSLSQSAAITYSLFQEKKMSLISLTEDRIMPLTAVGMHLTQAVKAGCPLD 1281
Query: 617 MEEAS-SNHLEKII 629
ME A + ++KII
Sbjct: 1282 MERAGLTPEVQKII 1295
>WB|WBGene00004322 [details] [associations]
symbol:rcq-5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IMP]
[GO:0008340 "determination of adult lifespan" evidence=IMP]
InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0008340 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0006974 GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
EMBL:Z38112 HSSP:P15043 KO:K10902 PIR:T20430 RefSeq:NP_497810.1
ProteinModelPortal:Q19046 SMR:Q19046 PaxDb:Q19046
EnsemblMetazoa:E03A3.2 GeneID:175522 KEGG:cel:CELE_E03A3.2
UCSC:E03A3.2 CTD:175522 WormBase:E03A3.2 HOGENOM:HOG000021815
InParanoid:Q19046 OMA:AWAEIFN NextBio:888512 Uniprot:Q19046
Length = 809
Score = 663 (238.4 bits), Expect = 4.2e-67, Sum P(2) = 4.2e-67
Identities = 155/362 (42%), Positives = 208/362 (57%)
Query: 78 RADDVRLNVFGIPAYRAN-QQEIINAVLSGR-DVLVIMAAGGGKSLCYQLPAVLREGIAL 135
R D V L +F YR+ Q + IN +L + DV V + G GKSLCYQLPAV+ GI +
Sbjct: 164 RRDKVFLELFCHKKYRSRLQMQAINCILKRKCDVYVSLPTGAGKSLCYQLPAVVHGGITV 223
Query: 136 VVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKIS 195
V+SPL++L++DQ+ L GIP L ST + + I L K + ++MLY+T E ++
Sbjct: 224 VISPLIALMKDQISSLKRKGIPCETLNSTLTTVERSRIMGELAKEKPTIRMLYLTAEGVA 283
Query: 196 K--SKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMAL 253
+K+ ++ L + L I +DEAHC +QWGHDFRPDY LG L+ P VP +AL
Sbjct: 284 TDGTKKLLNGLA---NRDVLRYIVVDEAHCVTQWGHDFRPDYLTLGSLRDVCPGVPWVAL 340
Query: 254 TATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFY------------MVREKSSVGKVVI 301
TATA K Q+D+ L +R F S R NLFY V K+S +
Sbjct: 341 TATANAKAQDDIAFQLKLRNPESFKSGTYRDNLFYDNHMASFITKCLTVDAKTSSSNLTK 400
Query: 302 DEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRW 361
E A+ Q + S IVYC SR EC QVA+ L GI A YHA + R +V +W
Sbjct: 401 HEKAERSQNKKTFTGSAIVYCRSRNECGQVAKMLEIAGIPAMAYHAGLGKKDRNEVQEKW 460
Query: 362 SKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRP 421
N++ V+ TVAFGMGI+KPDVR VIH S S+++ YYQE+GRAGRDG S C +++
Sbjct: 461 MNNEIPVVAATVAFGMGIDKPDVRAVIHWSPSQNLAGYYQEAGRAGRDGKRSYCRIYYSK 520
Query: 422 AD 423
D
Sbjct: 521 QD 522
Score = 37 (18.1 bits), Expect = 4.2e-67, Sum P(2) = 4.2e-67
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 633 KTGKYGSRILEVISKCGNSEQQHDNNAVSKEEQGRDARASKRTKKEKA 680
+ G+ G R S C + D NA++ G A+ ++ KK A
Sbjct: 504 RAGRDGKR-----SYCRIYYSKQDKNALNFLVSGELAKLREKAKKNNA 546
>FB|FBgn0027375 [details] [associations]
symbol:RecQ5 "homolog of RecQ" species:7227 "Drosophila
melanogaster" [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=IDA] [GO:0003678 "DNA
helicase activity" evidence=ISS] [GO:0004386 "helicase activity"
evidence=ISS] [GO:0017116 "single-stranded DNA-dependent
ATP-dependent DNA helicase activity" evidence=IDA] [GO:0003924
"GTPase activity" evidence=IDA] [GO:0005525 "GTP binding"
evidence=IDA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IDA;IMP] [GO:0045930 "negative regulation of
mitotic cell cycle" evidence=IMP] [GO:0010165 "response to X-ray"
evidence=IDA] [GO:0045002 "double-strand break repair via
single-strand annealing" evidence=IMP] [GO:0090007 "regulation of
mitotic anaphase" evidence=IDA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005525 GO:GO:0005524
GO:GO:0005634 GO:GO:0003924 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0006310 GO:GO:0010165 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045002 GO:GO:0045930
TIGRFAMs:TIGR00614 GO:GO:0090007 GO:GO:0017116 HSSP:P15043
FlyBase:FBgn0027375 EMBL:AB031086 ProteinModelPortal:Q9U5E0
PRIDE:Q9U5E0 InParanoid:Q9U5E0 ArrayExpress:Q9U5E0 Bgee:Q9U5E0
Uniprot:Q9U5E0
Length = 1058
Score = 632 (227.5 bits), Expect = 3.2e-66, Sum P(3) = 3.2e-66
Identities = 140/352 (39%), Positives = 208/352 (59%)
Query: 87 FGIPAYRANQQE--IINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREG-IALVVSPLLSL 143
FG ++++ QE + AV +DV V M G GKSLC+QLP ++ E I +V SPLL+L
Sbjct: 15 FGHSKFKSDLQEKAVKCAVKKKQDVYVSMPTGSGKSLCFQLPGLMSENQITIVFSPLLAL 74
Query: 144 IQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSK 203
I+DQ+ L L +PA L S S ++ + L+ LK LY+TPE+ + +K F
Sbjct: 75 IKDQIDHLTKLKVPADSLNSKMSTKERDRVIMDLKAVRTNLKFLYITPEQAA-TKFFQDL 133
Query: 204 LEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQN 263
L+ H +L+ ++DEAHC SQWGHDFRPDY LG L++++ DV +ALTATA+++V+
Sbjct: 134 LQTLHKHNKLAYFAVDEAHCVSQWGHDFRPDYLKLGELRSKYSDVIWLALTATASREVKE 193
Query: 264 DLMEMLHIRKCIKFVSTIN-RPNLFYMVREKSSV----------GKVVIDEIAKYIQESY 312
D+ + L + + + ST + R NLFY + K+S+ + + ++
Sbjct: 194 DIYKQLRLHQPVAQFSTPSFRKNLFYDIVYKNSIEDDFQHLADFARHCLGNPKEFKDTPK 253
Query: 313 PNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGT 372
P GIVYC +R + E++A + ++GI A YHA + R +V W + +I T
Sbjct: 254 PQRGCGIVYCRTRDQVERMAIGVTKQGIGAVAYHAGLKTGERTEVQEAWMRGDQPIICAT 313
Query: 373 VAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADV 424
+FGMG++KP VRFVIH + ++V YYQESGRAGRDGL S C L++ DV
Sbjct: 314 NSFGMGVDKPSVRFVIHWDVPQNVAAYYQESGRAGRDGLQSYCRLYYGREDV 365
Score = 52 (23.4 bits), Expect = 3.2e-66, Sum P(3) = 3.2e-66
Identities = 13/39 (33%), Positives = 26/39 (66%)
Query: 552 LEISSVQKNTADNKKSTKRSLTSSALEFELDELRKELAS 590
L+ V++ ++++ TKRSL ++ L+ + +E RK+ AS
Sbjct: 911 LDKKDVKEKKLESRE-TKRSLQNNELQHKQEEDRKDKAS 948
Score = 50 (22.7 bits), Expect = 5.1e-66, Sum P(3) = 5.1e-66
Identities = 24/79 (30%), Positives = 38/79 (48%)
Query: 602 SSQLIRL--ISARKPSTMEEASSNHLEKIIGKLKTGKYGSRILEVISKCGNSEQQHDNNA 659
S++L +L ISAR+ + + L+K +K K SR E N+E QH
Sbjct: 886 SNKLEKLGFISAREMLEKNKLNERCLDK--KDVKEKKLESR--ETKRSLQNNELQH---- 937
Query: 660 VSKEEQGRDARASKRTKKE 678
+EE +D + ++T KE
Sbjct: 938 -KQEEDRKDKASHRKTSKE 955
Score = 47 (21.6 bits), Expect = 2.4e-63, Sum P(2) = 2.4e-63
Identities = 30/131 (22%), Positives = 54/131 (41%)
Query: 547 KKIIKLEISSVQKNTADNKKSTKRSLTSSALEFELDELRKELASISGGILPHSVLSSQLI 606
+K K E S ++ KK K S ++ E ++ E + P + S+ +
Sbjct: 683 RKGFKQENSKQTSISSFFKKEIKEEPIDSPIQEERVNIKSEQMDLEEST-PKDIASNHV- 740
Query: 607 RLISARKPSTMEEASSNHLEKIIGKLKTGKY-GSRILEVISKCGNSEQQHDNNAVSKEEQ 665
++ S E+SS+ E +L+ G R +++S S H VS E Q
Sbjct: 741 -----KEESVTPESSSSDREL---ELQPDSIIGERKFKLMSNGDGSYDTHRRKRVSHETQ 792
Query: 666 GRDARASKRTK 676
++ + S +TK
Sbjct: 793 PKE-KESIKTK 802
Score = 42 (19.8 bits), Expect = 3.2e-66, Sum P(3) = 3.2e-66
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 493 QDNNQRLTMLQLVDKMKIKLKEIDSDLKREEI 524
Q+N+++ T + K +IK + IDS ++ E +
Sbjct: 688 QENSKQ-TSISSFFKKEIKEEPIDSPIQEERV 718
>UNIPROTKB|F1PUF8 [details] [associations]
symbol:WRN "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012337 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00474 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:AAEX03010418 Ensembl:ENSCAFT00000037050
OMA:TERICLM Uniprot:F1PUF8
Length = 1574
Score = 668 (240.2 bits), Expect = 7.0e-66, Sum P(2) = 7.0e-66
Identities = 175/497 (35%), Positives = 283/497 (56%)
Query: 2 ETEEILQELENVEAEVRLVQEQIKQLVDRQ----DQLYERQSELKSLLEA-FEASRGSPI 56
+ EE L + +E++ L +E IK L + D ++ + +++ L+ FE I
Sbjct: 548 DNEEDLSYV--IESDEDLEKEMIKSLENLNTGMADPIHSKCIKMEGNLDVPFEDDEDE-I 604
Query: 57 QYGGSSSTAVENWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGR-DVLVIMAA 115
+ VE++S + + +++ FG +++ Q ++I++VL R D +V+MA
Sbjct: 605 EAIEEEDDNVEDYSLPRPNARQINFLKI-YFGHSSFKPVQWKVIHSVLEERRDNVVVMAT 663
Query: 116 GGGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYK 175
G GKSLC+Q P V I LV+SPL+SL++DQV+ L IPA L S SK + +
Sbjct: 664 GYGKSLCFQYPPVYSGRIGLVISPLISLMEDQVLQLKMSNIPACFLGSAQSKN----VLE 719
Query: 176 ALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDY 235
++ G+ +++Y+TPE S + + +L+ G ++LI++DEAHC S+WGHDFR +
Sbjct: 720 DIKLGK--YRIVYITPEFCSGNLFLLQQLQA--DIG-ITLIAVDEAHCISEWGHDFRSSF 774
Query: 236 KNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSS 295
+ LG LK P VP++ALTATA+ ++ D++ L+++ + +RPNL+ VR K+
Sbjct: 775 RTLGSLKAILPSVPIVALTATASSSIREDIVRCLNLKNPQITCTGFDRPNLYLEVRRKT- 833
Query: 296 VGKVVIDEIAKYIQESYPNSE-SG--IVYCFSRKECEQVAQELRQRGISADYYHADMDIN 352
G ++ D +Q++ E G I+YC SRK EQV ELR+ ++ YHA +DI
Sbjct: 834 -GSILQDLDQFLVQKTSSIWEFEGPTIIYCPSRKTTEQVTAELRKLKLACGAYHAGLDIK 892
Query: 353 AREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLP 412
+R ++H R+ ++++Q +V T+AFGMGINK D+R VIH+ K +E+YYQE GRAGRDGL
Sbjct: 893 SRREIHHRFMRDEIQCVVATIAFGMGINKADIRKVIHYGAPKEMESYYQEIGRAGRDGLQ 952
Query: 413 SECLLFFRPADV---PRQSSMVFYENSGLQNLYDIVRYSQYPLHWNIEKVRLVI--FEKL 467
S C + + PAD+ + S + E L L + + +Y LH + +L++ FE
Sbjct: 953 SSCHVLWAPADICLNRHRLSEITSEKFRLYKLKMMAKMEKY-LHSTRCRRQLILSHFEDK 1011
Query: 468 QQVNLFCMVVLAGHAQC 484
Q V + G QC
Sbjct: 1012 QLRK--ASVGIMGTEQC 1026
Score = 45 (20.9 bits), Expect = 7.0e-66, Sum P(2) = 7.0e-66
Identities = 48/220 (21%), Positives = 85/220 (38%)
Query: 458 KVRLVIFEKLQQVNLFCMVVLAGHAQCIISLLQDIQDNNQRLTMLQLVDKMKIKLKEIDS 517
K+R FE ++++N V G A + LL+ I+ Q + +Q K E
Sbjct: 1281 KMRPTTFENMKRIN----GVSEGKATMLTPLLEVIKHFCQ-INNVQSDLFSSTKPWEEPR 1335
Query: 518 DLKREEIEQLVLQLIIDRVLVRIGPFSPGK-KIIKLEISSVQKNTADNKKSTKRSLTSSA 576
+ EE E L + F K +I L + TA T+
Sbjct: 1336 NSVVEENETCSLS---QSAAITYSLFQEKKMSLISLTEDRIMPLTAVGMHLTQAVKAGCP 1392
Query: 577 LEFELDELRKELASISGGILPHSVLSSQL--IRLISARKPSTMEEASSNHLEKIIGKLKT 634
L+ E L E+ I ++ + ++S + I+LI P ++ + + +I+ K
Sbjct: 1393 LDMERAGLTPEVQKIITDVIRNPPINSDINKIKLIRKLVPENIDTYLIHMVIEILEKDSD 1452
Query: 635 GKYGSRILEVISK----CGNSEQQHDNNAVSKEEQGRDAR 670
+ S L S NSE+ ++ S+EE G + +
Sbjct: 1453 NRLLSDGLSCASNRKRYFPNSEENCSSSKRSREEVGTNTK 1492
>UNIPROTKB|O93530 [details] [associations]
symbol:wrn "Werner syndrome ATP-dependent helicase homolog"
species:8355 "Xenopus laevis" [GO:0000287 "magnesium ion binding"
evidence=ISS] [GO:0006259 "DNA metabolic process" evidence=ISS]
[GO:0008408 "3'-5' exonuclease activity" evidence=ISS] [GO:0030145
"manganese ion binding" evidence=ISS] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF01612 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00474 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0005634 GO:GO:0000287
GO:GO:0003677 GO:GO:0006260 GO:GO:0006259 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0030145 GO:GO:0006310
SUPFAM:SSF53098 GO:GO:0008408 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 KO:K10900 CTD:7486 HOVERGEN:HBG000325
EMBL:AF067418 PIR:T14895 RefSeq:NP_001081838.1 UniGene:Xl.404
ProteinModelPortal:O93530 SMR:O93530 GeneID:398079 KEGG:xla:398079
Xenbase:XB-GENE-992879 Uniprot:O93530
Length = 1436
Score = 652 (234.6 bits), Expect = 6.1e-64, Sum P(2) = 6.1e-64
Identities = 143/341 (41%), Positives = 216/341 (63%)
Query: 87 FGIPAYRANQQEIINAVL-SGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQ 145
FG +++ Q +++++VL RD LV+MA G GKSLCYQ V GI +V+ PL+SL++
Sbjct: 485 FGHSSFKPVQWKVVHSVLRERRDNLVVMATGYGKSLCYQFAPVYTSGIGIVICPLISLME 544
Query: 146 DQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLE 205
DQV+ L I + L S SK + + ++ +G+++++Y+TPE S+ + L+
Sbjct: 545 DQVLQLEMSNISSCFLGSAQSKN----VLQDVK--DGKMRVIYMTPEFCSRGISLLQDLD 598
Query: 206 KCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDL 265
+ G ++LI+IDEAHC S+WGHDFR Y++LG LK P+VP++ALTATA+ ++ D+
Sbjct: 599 NRY--G-ITLIAIDEAHCISEWGHDFRSAYRSLGSLKRMLPNVPIVALTATASPSIREDI 655
Query: 266 MEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDE-IAKYIQESYPNSESG-IVYCF 323
+ L++ ++ +RPNL+ V K++ + + + + K Q S E IVYC
Sbjct: 656 TKSLNLHNPQVTCTSFDRPNLYLDVARKTTNISIDLRQFLIKKQQGSGWEFEGATIVYCP 715
Query: 324 SRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPD 383
+RK EQV EL + GI+ YHA M I R +VH R+ ++++ +V TVAFGMGINKPD
Sbjct: 716 TRKTSEQVTAELIKLGIACGTYHAGMGIKQRREVHHRFMRDEIHCVVATVAFGMGINKPD 775
Query: 384 VRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADV 424
+R VIH+ K +E+YYQE GRAGRDGLPS C + AD+
Sbjct: 776 IRKVIHYGAPKEMESYYQEIGRAGRDGLPSCCHALWAQADM 816
Score = 41 (19.5 bits), Expect = 6.1e-64, Sum P(2) = 6.1e-64
Identities = 9/43 (20%), Positives = 23/43 (53%)
Query: 28 VDRQDQLYERQSELKSLLEAFEASRGSPIQYGGSSSTAVENWS 70
VD + L E+ EL+++++ + G+ + + S + ++ S
Sbjct: 277 VDILEDLSEKLEELRNIMKEASKAEGNGLHFQNSEDCSKKDKS 319
>UNIPROTKB|Q14191 [details] [associations]
symbol:WRN "Werner syndrome ATP-dependent helicase"
species:9606 "Homo sapiens" [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0001302 "replicative cell aging" evidence=IEA] [GO:0040009
"regulation of growth rate" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0031297 "replication fork processing" evidence=IMP;IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0000723 "telomere
maintenance" evidence=IMP] [GO:0007569 "cell aging" evidence=IMP]
[GO:0010259 "multicellular organismal aging" evidence=IMP]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IDA]
[GO:0007568 "aging" evidence=NAS] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003678 "DNA helicase activity" evidence=IDA;IMP]
[GO:0004386 "helicase activity" evidence=IDA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IDA] [GO:0042803 "protein
homodimerization activity" evidence=IDA] [GO:0032403 "protein
complex binding" evidence=IDA] [GO:0000731 "DNA synthesis involved
in DNA repair" evidence=IDA] [GO:0010225 "response to UV-C"
evidence=IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=IDA] [GO:0006260 "DNA replication" evidence=IMP]
[GO:0032389 "MutLalpha complex" evidence=IDA] [GO:0000403 "Y-form
DNA binding" evidence=IDA] [GO:0043138 "3'-5' DNA helicase
activity" evidence=IDA] [GO:0000405 "bubble DNA binding"
evidence=IDA] [GO:0009378 "four-way junction helicase activity"
evidence=IDA] [GO:0051880 "G-quadruplex DNA binding" evidence=IDA]
[GO:0006284 "base-excision repair" evidence=IDA] [GO:0051345
"positive regulation of hydrolase activity" evidence=IDA]
[GO:0006979 "response to oxidative stress" evidence=IDA]
[GO:0005813 "centrosome" evidence=IDA] [GO:0000287 "magnesium ion
binding" evidence=IDA] [GO:0030145 "manganese ion binding"
evidence=IDA] [GO:0006259 "DNA metabolic process" evidence=IDA]
[GO:0006302 "double-strand break repair" evidence=IMP] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0071480 "cellular response to gamma
radiation" evidence=IDA] [GO:0004527 "exonuclease activity"
evidence=IDA] [GO:0009267 "cellular response to starvation"
evidence=IDA] [GO:0032066 "nucleolus to nucleoplasm transport"
evidence=IDA] [GO:0042981 "regulation of apoptotic process"
evidence=IGI] [GO:0005634 "nucleus" evidence=IDA] [GO:0006200 "ATP
catabolic process" evidence=IDA] [GO:0032508 "DNA duplex unwinding"
evidence=IMP;IDA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00474 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0005813 Pathway_Interaction_DB:telomerasepathway
GO:GO:0042803 GO:GO:0005654 GO:GO:0006979 GO:GO:0005730
GO:GO:0042981 GO:GO:0032403 GO:GO:0000287 GO:GO:0006284
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145
GO:GO:0006310 GO:GO:0009267 GO:GO:0004003 SUPFAM:SSF53098
MIM:114500 GO:GO:0040009 GO:GO:0008408 GO:GO:0051345 GO:GO:0010259
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GO:GO:0000723 GO:GO:0010225 GO:GO:0007569 eggNOG:COG0514
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0000403
GO:GO:0000731 GO:GO:0000405 GO:GO:0009378 GO:GO:0051880
GO:GO:0031297 GO:GO:0043138 GO:GO:0032066 KO:K10900 EMBL:L76937
EMBL:AY818673 EMBL:AF091214 EMBL:AF181897 EMBL:AF181896
EMBL:AY442327 EMBL:AC084736 IPI:IPI00029107 RefSeq:NP_000544.2
UniGene:Hs.632050 PDB:2AXL PDB:2DGZ PDB:2E1E PDB:2E1F PDB:2FBT
PDB:2FBV PDB:2FBX PDB:2FBY PDB:2FC0 PDB:3AAF PDBsum:2AXL
PDBsum:2DGZ PDBsum:2E1E PDBsum:2E1F PDBsum:2FBT PDBsum:2FBV
PDBsum:2FBX PDBsum:2FBY PDBsum:2FC0 PDBsum:3AAF DisProt:DP00443
ProteinModelPortal:Q14191 SMR:Q14191 DIP:DIP-31380N IntAct:Q14191
MINT:MINT-95856 STRING:Q14191 PhosphoSite:Q14191 DMDM:6136393
PaxDb:Q14191 PRIDE:Q14191 Ensembl:ENST00000298139 GeneID:7486
KEGG:hsa:7486 UCSC:uc003xio.4 CTD:7486 GeneCards:GC08P030948
H-InvDB:HIX0007441 HGNC:HGNC:12791 HPA:HPA028661 MIM:277700
MIM:604611 neXtProt:NX_Q14191 Orphanet:902 PharmGKB:PA367
HOGENOM:HOG000146447 HOVERGEN:HBG000325 InParanoid:Q14191
OMA:GIEGDQW OrthoDB:EOG4DNF3J PhylomeDB:Q14191
EvolutionaryTrace:Q14191 GenomeRNAi:7486 NextBio:29326 Bgee:Q14191
CleanEx:HS_WRN Genevestigator:Q14191 GermOnline:ENSG00000165392
Uniprot:Q14191
Length = 1432
Score = 655 (235.6 bits), Expect = 7.5e-64, Sum P(2) = 7.5e-64
Identities = 142/342 (41%), Positives = 218/342 (63%)
Query: 87 FGIPAYRANQQEIINAVLSGR-DVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQ 145
FG +++ Q ++I++VL R D + +MA G GKSLC+Q P V I LV+SPL+SL++
Sbjct: 544 FGHSSFKPVQWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPVYVGKIGLVISPLISLME 603
Query: 146 DQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLE 205
DQV+ L IPA L S S+ + ++ G+ +++YVTPE S + + +LE
Sbjct: 604 DQVLQLKMSNIPACFLGSAQSEN----VLTDIKLGK--YRIVYVTPEYCSGNMGLLQQLE 657
Query: 206 KCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDL 265
G ++LI++DEAHC S+WGHDFR ++ LG LKT P VP++ALTATA+ ++ D+
Sbjct: 658 A--DIG-ITLIAVDEAHCISEWGHDFRDSFRKLGSLKTALPMVPIVALTATASSSIREDI 714
Query: 266 MEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSE-SG--IVYC 322
+ L++R + +RPNL+ VR K+ G ++ D + ++ ++ + E G I+YC
Sbjct: 715 VRCLNLRNPQITCTGFDRPNLYLEVRRKT--GNILQD-LQPFLVKTSSHWEFEGPTIIYC 771
Query: 323 FSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKP 382
SRK +QV ELR+ +S YHA M + R+ +H R+ ++++Q ++ T+AFGMGINK
Sbjct: 772 PSRKMTQQVTGELRKLNLSCGTYHAGMSFSTRKDIHHRFVRDEIQCVIATIAFGMGINKA 831
Query: 383 DVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADV 424
D+R VIH+ K +E+YYQE GRAGRDGL S C + + PAD+
Sbjct: 832 DIRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADI 873
Score = 37 (18.1 bits), Expect = 7.5e-64, Sum P(2) = 7.5e-64
Identities = 25/107 (23%), Positives = 46/107 (42%)
Query: 577 LEFELDELRKELASISGGILPHSVLSSQLIRLISARKPSTMEEASSNHLEKIIGKLKTGK 636
L+ E L E+ I ++ + ++S + + IS + E + + I LK G
Sbjct: 1301 LDLERAGLTPEVQKIIADVIRNPPVNSDMSK-ISLIRMLVPENIDTYLIHMAIEILKHGP 1359
Query: 637 -YGSRILEVISK--C-GNSEQQHDNNAVSKEEQGRDARASKRTKKEK 679
G + ++K C SE+ ++ SKEE G + S +K +
Sbjct: 1360 DSGLQPSCDVNKRRCFPGSEEICSSSKRSKEEVGINTETSSAERKRR 1406
>UNIPROTKB|F1NAR0 [details] [associations]
symbol:F1NAR0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] [GO:0000403 "Y-form DNA
binding" evidence=IEA] [GO:0000405 "bubble DNA binding"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0000731 "DNA synthesis involved in DNA repair" evidence=IEA]
[GO:0001302 "replicative cell aging" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] [GO:0006284 "base-excision
repair" evidence=IEA] [GO:0006979 "response to oxidative stress"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0009267 "cellular response to starvation"
evidence=IEA] [GO:0009378 "four-way junction helicase activity"
evidence=IEA] [GO:0010225 "response to UV-C" evidence=IEA]
[GO:0010259 "multicellular organismal aging" evidence=IEA]
[GO:0030145 "manganese ion binding" evidence=IEA] [GO:0031297
"replication fork processing" evidence=IEA] [GO:0032066 "nucleolus
to nucleoplasm transport" evidence=IEA] [GO:0032389 "MutLalpha
complex" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0040009 "regulation of growth rate" evidence=IEA]
[GO:0042803 "protein homodimerization activity" evidence=IEA]
[GO:0042981 "regulation of apoptotic process" evidence=IEA]
[GO:0051345 "positive regulation of hydrolase activity"
evidence=IEA] [GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012337 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF01612 Pfam:PF09382 PROSITE:PS51194
SMART:SM00341 SMART:SM00474 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0005813 GO:GO:0005654 GO:GO:0006979
GO:GO:0005730 GO:GO:0042981 GO:GO:0000287 GO:GO:0006284
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145
GO:GO:0006310 GO:GO:0009267 SUPFAM:SSF53098 GO:GO:0040009
GO:GO:0008408 GO:GO:0051345 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723 GO:GO:0010225
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000403 GO:GO:0000731 GO:GO:0000405
GO:GO:0009378 GO:GO:0051880 GO:GO:0031297 GO:GO:0032389
GO:GO:0032066 OMA:GIEGDQW EMBL:AADN02016143 IPI:IPI01017120
Ensembl:ENSGALT00000016720 Uniprot:F1NAR0
Length = 1367
Score = 646 (232.5 bits), Expect = 2.6e-63, Sum P(2) = 2.6e-63
Identities = 166/473 (35%), Positives = 255/473 (53%)
Query: 13 VEAEVRLVQEQIKQLVDRQDQLYERQSELKSLLEAFEASRGSPIQYGGSSSTAVEN---- 68
+E++ L E +K L D D E +E +S + G +E
Sbjct: 376 IESDEELEMEMLKSLED-VDNSKEVPTERESSKARKTPDTELNVAPDGDEDEVIEEDEEE 434
Query: 69 -WSGTFEWDSRADDVRLNV-FGIPAYRANQQEIINAVLSG-RDVLVIMAAGGGKSLCYQL 125
W S L FG +++ Q ++I++VL RD LV+MA G GKSLCYQ
Sbjct: 435 CWDPLLSVPSEIHIACLKTYFGHSSFKPVQWKVIHSVLEDKRDNLVVMATGYGKSLCYQF 494
Query: 126 PAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELK 185
P V G +V+ PL+SL++DQV+ L GI + +L S SK D K KA G +
Sbjct: 495 PPVYTGGTGIVICPLISLMEDQVLQLTMSGISSCLLGSAQSK-DVKDNIKA-----GLYR 548
Query: 186 MLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQF 245
++Y+TPE S + + +++ G ++LI++DEAHC S+WGHDFR ++ L LK
Sbjct: 549 VIYMTPEFCSGNLELLQDIDRT--TG-IALIAVDEAHCISEWGHDFRISFRKLNSLKKAL 605
Query: 246 PDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIA 305
P VP++ALTATA+ ++ D++ L+++ ++ +RPNL+ V +S G + D +
Sbjct: 606 PSVPIVALTATASPSIREDIVNCLNLKNPQVTCTSFDRPNLYLEVGRQS--GNTLRD-LK 662
Query: 306 KYI-----QESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMR 360
+++ +Y I+YC SRK EQV EL + G++ YHA M I R H +
Sbjct: 663 QFLTRKGSSSTYEFEGPTIIYCPSRKATEQVMFELNKLGVTCGAYHAGMGIQKRRDTHHQ 722
Query: 361 WSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFR 420
+ ++++Q +V TVAFGMGINK D+R VIH+ K +E+YYQE GRAGRDGLP+ C + +
Sbjct: 723 FMRDEIQCVVATVAFGMGINKADIRMVIHYGAPKEMESYYQEIGRAGRDGLPASCHVLWT 782
Query: 421 PADVP---RQSSMVFYENSGLQNLYDIVRYSQYPLHWNIEKVRLVI--FEKLQ 468
AD+ R + + E L L + + +Y L N + R+++ FE Q
Sbjct: 783 AADLVLNRRLLNEIHNEKFRLYKLKMLEKMEKY-LSSNSCRSRIILSHFEDKQ 834
Score = 40 (19.1 bits), Expect = 2.6e-63, Sum P(2) = 2.6e-63
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 488 LLQDIQDNNQRLTMLQLVDKMKIKLKEIDSDLKREEI 524
LL +I + RL L++++KM+ K + S+ R I
Sbjct: 792 LLNEIHNEKFRLYKLKMLEKME---KYLSSNSCRSRI 825
>DICTYBASE|DDB_G0268512 [details] [associations]
symbol:wrn "Werner syndrome protein" species:44689
"Dictyostelium discoideum" [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00490 SMART:SM00956 dictyBase:DDB_G0268512 GO:GO:0005524
GenomeReviews:CM000150_GR GO:GO:0006260 GO:GO:0006281
EMBL:AAFI02000003 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0005622 GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 eggNOG:COG0514
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
RefSeq:XP_001732947.1 ProteinModelPortal:B0G0Y4
EnsemblProtists:DDB0238429 GeneID:8616084 KEGG:ddi:DDB_G0268512
OMA:FLFNKTE Uniprot:B0G0Y4
Length = 1136
Score = 637 (229.3 bits), Expect = 7.2e-63, Sum P(2) = 7.2e-63
Identities = 143/373 (38%), Positives = 225/373 (60%)
Query: 76 DSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIAL 135
D++ ++ FG+ ++R NQ E+I +SG D + MA G GKSLC+Q+P + A+
Sbjct: 286 DNKIIEILKKYFGLHSFRPNQLEVIKHTISGGDSFLSMATGTGKSLCFQIPPLYLNKTAI 345
Query: 136 VVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKIS 195
VVSPL+SLI DQ + L +LGI L+S ++ Y+ + KG L +Y+TPE+I
Sbjct: 346 VVSPLVSLITDQTLKLKSLGIKVTKLSSDIKSSSKE--YELIFKGYYNL--VYITPERII 401
Query: 196 KSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTA 255
+ + +L + ++ L +IDEAHC SQWGH FR Y+ L L+ QFP VP+MA+TA
Sbjct: 402 NEYQSIGELVRNE---KICLFAIDEAHCISQWGHSFRESYRKLQELRNQFPTVPIMAVTA 458
Query: 256 TATQKVQNDLMEMLHIRK--CIKFVSTINRPNLFY--MVREK--SSVGKVVIDEIAKYIQ 309
TAT+ +++D++ L I C F S+ NRPN++Y ++++K S+ K+++D + + +
Sbjct: 459 TATKSIESDIINNLGIGNGNCKMFKSSKNRPNIYYKVIIKDKLVSNDFKMILDILLETRK 518
Query: 310 ESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVI 369
S S I+YC + + ++ + L I ++ YH+ + R++ + NK +VI
Sbjct: 519 TIGVVSNSTIIYCTTIQIANELNRFLCDNKIQSNVYHSQLGDKQRDETLKNFLFNKTEVI 578
Query: 370 VGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSS 429
V T+AFGMGI+K DVR +I++ SKSVE +YQESGRAGRDGL S L+ + D + S
Sbjct: 579 VATIAFGMGIDKHDVRLIINYGASKSVEDFYQESGRAGRDGLQSLSLIIYSLQDFVKSSF 638
Query: 430 MVFYENSGLQNLY 442
++ N+ N Y
Sbjct: 639 LL--RNNNNYNKY 649
Score = 40 (19.1 bits), Expect = 7.2e-63, Sum P(2) = 7.2e-63
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 490 QDIQDNNQRLTMLQLVDKMKIKLKEIDSDLKREEIEQLVLQLIIDRVLV 538
Q Q +Q+L + + KL +I++ K EI+ +V++L ++L+
Sbjct: 867 QQSQQQSQKLNN-DNSNNNESKLLKIEAFTKPNEIDPIVMKLF--KILI 912
>MGI|MGI:109635 [details] [associations]
symbol:Wrn "Werner syndrome homolog (human)" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=ISO] [GO:0000403
"Y-form DNA binding" evidence=ISO] [GO:0000405 "bubble DNA binding"
evidence=ISO] [GO:0000723 "telomere maintenance"
evidence=ISO;IGI;IMP] [GO:0000731 "DNA synthesis involved in DNA
repair" evidence=ISO] [GO:0001302 "replicative cell aging"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003678 "DNA helicase
activity" evidence=ISO] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISO] [GO:0004386 "helicase activity" evidence=ISO]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=ISO] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=ISO;IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0005813 "centrosome" evidence=ISO]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006259 "DNA metabolic process" evidence=ISO;IMP] [GO:0006260
"DNA replication" evidence=ISO;IMP] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=ISO]
[GO:0006302 "double-strand break repair" evidence=ISO] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=ISO] [GO:0006979 "response to oxidative
stress" evidence=ISO] [GO:0007569 "cell aging" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008152 "metabolic process" evidence=IEA] [GO:0008408 "3'-5'
exonuclease activity" evidence=ISO;IDA] [GO:0009267 "cellular
response to starvation" evidence=ISO] [GO:0009378 "four-way
junction helicase activity" evidence=ISO] [GO:0010225 "response to
UV-C" evidence=ISO] [GO:0010259 "multicellular organismal aging"
evidence=ISO;IGI] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0030145 "manganese
ion binding" evidence=ISO] [GO:0031297 "replication fork
processing" evidence=ISO] [GO:0032066 "nucleolus to nucleoplasm
transport" evidence=ISO] [GO:0032403 "protein complex binding"
evidence=ISO] [GO:0032508 "DNA duplex unwinding" evidence=ISO]
[GO:0040009 "regulation of growth rate" evidence=IMP] [GO:0042803
"protein homodimerization activity" evidence=ISO] [GO:0042981
"regulation of apoptotic process" evidence=ISO] [GO:0043138 "3'-5'
DNA helicase activity" evidence=ISO] [GO:0043140 "ATP-dependent
3'-5' DNA helicase activity" evidence=IEA] [GO:0044237 "cellular
metabolic process" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051345 "positive regulation of hydrolase
activity" evidence=ISO] [GO:0051880 "G-quadruplex DNA binding"
evidence=ISO] [GO:0071480 "cellular response to gamma radiation"
evidence=ISO] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00474 SMART:SM00490 SMART:SM00956 MGI:MGI:109635
GO:GO:0005524 GO:GO:0005654 GO:GO:0005730 GO:GO:0000287
GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145 GO:GO:0006310
GO:GO:0009267 SUPFAM:SSF53098 GO:GO:0040009 GO:GO:0008408
GO:GO:0010259 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0000723 eggNOG:COG0514
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0032066 KO:K10900 CTD:7486
HOGENOM:HOG000146447 HOVERGEN:HBG000325 OMA:GIEGDQW
OrthoDB:EOG4DNF3J EMBL:D86527 EMBL:D86526 EMBL:AF091215
EMBL:AF091216 EMBL:AF241636 EMBL:AC153789 EMBL:AC115809
EMBL:BC050921 EMBL:BC060700 IPI:IPI00113830 PIR:T17452 PIR:T30247
RefSeq:NP_001116294.1 RefSeq:NP_035851.3 UniGene:Mm.228805 PDB:2E6L
PDB:2E6M PDBsum:2E6L PDBsum:2E6M ProteinModelPortal:O09053
SMR:O09053 DIP:DIP-27642N STRING:O09053 PhosphoSite:O09053
PaxDb:O09053 PRIDE:O09053 Ensembl:ENSMUST00000033990
Ensembl:ENSMUST00000033991 GeneID:22427 KEGG:mmu:22427
InParanoid:Q80YP9 EvolutionaryTrace:O09053 NextBio:302865
Bgee:O09053 CleanEx:MM_WRN Genevestigator:O09053
GermOnline:ENSMUSG00000031583 Uniprot:O09053
Length = 1401
Score = 647 (232.8 bits), Expect = 3.2e-62, P = 3.2e-62
Identities = 167/479 (34%), Positives = 268/479 (55%)
Query: 13 VEAEVRLVQEQIKQLVDRQDQLYERQSELKSLLEAFEASRGSPIQYGGSSSTAVENWSGT 72
+E++ L E +K L + + E + LE R P + G + A++
Sbjct: 431 IESDEDLEMEMLKSLENLNSDVVEPTHS--TWLEMGTNGRLPPEEEDGHGNEAIKEEQEE 488
Query: 73 FEW---DSRADDVRL--NVFGIPAYRANQQEIINAVLSGR-DVLVIMAAGGGKSLCYQLP 126
+ + A + FG +++ Q ++I++VL R D +V+MA G GKSLC+Q P
Sbjct: 489 EDHLLPEPNAKQINCLKTYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYP 548
Query: 127 AVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKM 186
V I +V+SPL+SL++DQV+ L +PA +L S SK I ++ G+ ++
Sbjct: 549 PVYTGKIGIVISPLISLMEDQVLQLELSNVPACLLGSAQSKN----ILGDVKLGK--YRV 602
Query: 187 LYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFP 246
+Y+TPE S + + +L+ G ++LI++DEAHC S+WGHDFR ++ LG LKT P
Sbjct: 603 IYITPEFCSGNLDLLQQLDSS--IG-ITLIAVDEAHCISEWGHDFRSSFRMLGSLKTALP 659
Query: 247 DVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDE--- 303
VP++AL+ATA+ ++ D++ L+++ + +RPNL+ V K+ G ++ D
Sbjct: 660 LVPVIALSATASSSIREDIISCLNLKDPQITCTGFDRPNLYLEVGRKT--GNILQDLKPF 717
Query: 304 IAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSK 363
+ + ++ I+YC SRK EQV EL + ++ YHA M I+ R+ VH R+ +
Sbjct: 718 LVRKASSAWEFEGPTIIYCPSRKMTEQVTAELGKLNLACRTYHAGMKISERKDVHHRFLR 777
Query: 364 NKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPAD 423
+++Q +V TVAFGMGINK D+R VIH+ K +E+YYQE GRAGRDGL S C L + PAD
Sbjct: 778 DEIQCVVATVAFGMGINKADIRKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHLLWAPAD 837
Query: 424 VPRQSSMVFY---ENSGLQNLYDIVRYSQYPLHWNIEKVRLVI--FEK--LQQVNLFCM 475
+++ E L L +V+ +Y LH + + R+++ FE LQ+ +L M
Sbjct: 838 FNTSRNLLIEIHDEKFRLYKLKMMVKMEKY-LHSSQCRRRIILSHFEDKCLQKASLDIM 895
>GENEDB_PFALCIPARUM|PF14_0278 [details] [associations]
symbol:PF14_0278 "ATP-dependent DNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF09382
PROSITE:PS51194 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0006310 EMBL:AE014187 GO:GO:0004003
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 KO:K01509 HSSP:P15043
RefSeq:XP_001348452.1 ProteinModelPortal:Q8ILG5
EnsemblProtists:PF14_0278:mRNA GeneID:811860 KEGG:pfa:PF14_0278
EuPathDB:PlasmoDB:PF3D7_1429900 ProtClustDB:CLSZ2501048
Uniprot:Q8ILG5
Length = 1440
Score = 620 (223.3 bits), Expect = 1.0e-60, Sum P(2) = 1.0e-60
Identities = 139/374 (37%), Positives = 221/374 (59%)
Query: 87 FGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVL---REGIALVVSPLLSL 143
FG + Q E ++A +D ++MA G GKSLCYQ+P+++ R+ +V+SPL+SL
Sbjct: 47 FGYKNLKDFQVEAVHATFHKKDSFIVMATGMGKSLCYQIPSLMDVCRKKFTIVISPLISL 106
Query: 144 IQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSK 203
++DQV L I + L S + K + E G K++Y +PE +K
Sbjct: 107 MKDQVDNLNRKRISSVFLGSGQKMNNNKILN---EIKHGIYKIVYCSPEYALNNKDVFIL 163
Query: 204 LEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQN 263
L+ R+ LI+IDE HC S+WGHDFRP Y+ L L+ ++P+M LTAT T+ VQ+
Sbjct: 164 LKN-----RILLIAIDEVHCMSEWGHDFRPSYRKLNELRIILKEIPIMCLTATCTKNVQS 218
Query: 264 DLMEMLH--IRKCIKFVSTINRPNLFYMVREKSSVG-----------KVVIDEIAKYIQE 310
D+++ L+ ++ C+ S++N+ NLFY VREK+ + K I+ K+I
Sbjct: 219 DILKNLNFDLQNCLIKRSSVNKKNLFYSVREKTDIYHDLKDILDIPLKESIERTKKFIDN 278
Query: 311 SYPNS-ESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVI 369
S S S ++Y S+KECE V L+++G+ YHAD+ + +++ H ++ K+++Q+I
Sbjct: 279 SKICSYNSTLIYVNSKKECESVYSFLKEKGLLVLMYHADLTNDQKKEAHEKFLKDEIQII 338
Query: 370 VGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSS 429
V TVAFGMGI+KPD+R +IH+ ++S+E Y Q+ GRAGRD +E +LFF D + +
Sbjct: 339 VATVAFGMGIDKPDIRRIIHYGFARSLEAYVQQVGRAGRDNSDAEAILFFHINDESKIKN 398
Query: 430 MVFYENSGLQNLYD 443
++ EN+ NL +
Sbjct: 399 IILRENTA-NNLIE 411
Score = 43 (20.2 bits), Expect = 1.0e-60, Sum P(2) = 1.0e-60
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 613 KPSTMEEASSNHLEKIIGKLKTGKYGSRILEVISKCGNSEQQHDNN 658
K + + + N K I + KY + SK ++QH+NN
Sbjct: 727 KDNDNDNDNDNDYSKDIYNVDDYKYDDH--HISSKIKQQQEQHNNN 770
Score = 39 (18.8 bits), Expect = 2.7e-60, Sum P(2) = 2.7e-60
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 643 EVISKCGNSEQQHDNNAVSKEEQGRDARASKRTKK 677
E I++ N E+ H NN + K E + K K
Sbjct: 819 ENINRDNNFEKTHKNN-IEKYEYIESYQKQKNNNK 852
>UNIPROTKB|Q8ILG5 [details] [associations]
symbol:PF14_0278 "ATP-dependent DNA helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF09382
PROSITE:PS51194 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0006310 EMBL:AE014187 GO:GO:0004003
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 KO:K01509 HSSP:P15043
RefSeq:XP_001348452.1 ProteinModelPortal:Q8ILG5
EnsemblProtists:PF14_0278:mRNA GeneID:811860 KEGG:pfa:PF14_0278
EuPathDB:PlasmoDB:PF3D7_1429900 ProtClustDB:CLSZ2501048
Uniprot:Q8ILG5
Length = 1440
Score = 620 (223.3 bits), Expect = 1.0e-60, Sum P(2) = 1.0e-60
Identities = 139/374 (37%), Positives = 221/374 (59%)
Query: 87 FGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVL---REGIALVVSPLLSL 143
FG + Q E ++A +D ++MA G GKSLCYQ+P+++ R+ +V+SPL+SL
Sbjct: 47 FGYKNLKDFQVEAVHATFHKKDSFIVMATGMGKSLCYQIPSLMDVCRKKFTIVISPLISL 106
Query: 144 IQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSK 203
++DQV L I + L S + K + E G K++Y +PE +K
Sbjct: 107 MKDQVDNLNRKRISSVFLGSGQKMNNNKILN---EIKHGIYKIVYCSPEYALNNKDVFIL 163
Query: 204 LEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQN 263
L+ R+ LI+IDE HC S+WGHDFRP Y+ L L+ ++P+M LTAT T+ VQ+
Sbjct: 164 LKN-----RILLIAIDEVHCMSEWGHDFRPSYRKLNELRIILKEIPIMCLTATCTKNVQS 218
Query: 264 DLMEMLH--IRKCIKFVSTINRPNLFYMVREKSSVG-----------KVVIDEIAKYIQE 310
D+++ L+ ++ C+ S++N+ NLFY VREK+ + K I+ K+I
Sbjct: 219 DILKNLNFDLQNCLIKRSSVNKKNLFYSVREKTDIYHDLKDILDIPLKESIERTKKFIDN 278
Query: 311 SYPNS-ESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVI 369
S S S ++Y S+KECE V L+++G+ YHAD+ + +++ H ++ K+++Q+I
Sbjct: 279 SKICSYNSTLIYVNSKKECESVYSFLKEKGLLVLMYHADLTNDQKKEAHEKFLKDEIQII 338
Query: 370 VGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSS 429
V TVAFGMGI+KPD+R +IH+ ++S+E Y Q+ GRAGRD +E +LFF D + +
Sbjct: 339 VATVAFGMGIDKPDIRRIIHYGFARSLEAYVQQVGRAGRDNSDAEAILFFHINDESKIKN 398
Query: 430 MVFYENSGLQNLYD 443
++ EN+ NL +
Sbjct: 399 IILRENTA-NNLIE 411
Score = 43 (20.2 bits), Expect = 1.0e-60, Sum P(2) = 1.0e-60
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 613 KPSTMEEASSNHLEKIIGKLKTGKYGSRILEVISKCGNSEQQHDNN 658
K + + + N K I + KY + SK ++QH+NN
Sbjct: 727 KDNDNDNDNDNDYSKDIYNVDDYKYDDH--HISSKIKQQQEQHNNN 770
Score = 39 (18.8 bits), Expect = 2.7e-60, Sum P(2) = 2.7e-60
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 643 EVISKCGNSEQQHDNNAVSKEEQGRDARASKRTKK 677
E I++ N E+ H NN + K E + K K
Sbjct: 819 ENINRDNNFEKTHKNN-IEKYEYIESYQKQKNNNK 852
>RGD|1564788 [details] [associations]
symbol:Wrn "Werner syndrome, RecQ helicase-like" species:10116
"Rattus norvegicus" [GO:0000287 "magnesium ion binding"
evidence=ISO] [GO:0000403 "Y-form DNA binding" evidence=ISO]
[GO:0000405 "bubble DNA binding" evidence=ISO] [GO:0000723
"telomere maintenance" evidence=ISO] [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=ISO] [GO:0001302 "replicative cell
aging" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003678
"DNA helicase activity" evidence=ISO] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISO] [GO:0004386 "helicase
activity" evidence=ISO] [GO:0004527 "exonuclease activity"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005813 "centrosome" evidence=ISO] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006259 "DNA metabolic
process" evidence=ISO] [GO:0006260 "DNA replication"
evidence=IEA;ISO] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=ISO] [GO:0006302
"double-strand break repair" evidence=ISO] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=ISO] [GO:0006979 "response to oxidative stress"
evidence=ISO] [GO:0007569 "cell aging" evidence=ISO] [GO:0008408
"3'-5' exonuclease activity" evidence=IEA;ISO] [GO:0009267
"cellular response to starvation" evidence=ISO] [GO:0009378
"four-way junction helicase activity" evidence=ISO] [GO:0010225
"response to UV-C" evidence=ISO] [GO:0010259 "multicellular
organismal aging" evidence=ISO] [GO:0016887 "ATPase activity"
evidence=ISO] [GO:0030145 "manganese ion binding" evidence=ISO]
[GO:0031297 "replication fork processing" evidence=ISO] [GO:0032066
"nucleolus to nucleoplasm transport" evidence=ISO] [GO:0032403
"protein complex binding" evidence=ISO] [GO:0032508 "DNA duplex
unwinding" evidence=ISO] [GO:0040009 "regulation of growth rate"
evidence=ISO] [GO:0042803 "protein homodimerization activity"
evidence=ISO] [GO:0042981 "regulation of apoptotic process"
evidence=ISO] [GO:0043138 "3'-5' DNA helicase activity"
evidence=ISO] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0051345 "positive regulation of
hydrolase activity" evidence=ISO] [GO:0051880 "G-quadruplex DNA
binding" evidence=ISO] [GO:0071480 "cellular response to gamma
radiation" evidence=ISO] [GO:0032389 "MutLalpha complex"
evidence=ISO] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00474
SMART:SM00490 SMART:SM00956 RGD:1564788 GO:GO:0005524 GO:GO:0005813
GO:GO:0005654 GO:GO:0006979 GO:GO:0005730 GO:GO:0042981
GO:GO:0000287 GO:GO:0006284 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0001302 GO:GO:0030145 GO:GO:0006310 GO:GO:0009267
SUPFAM:SSF53098 GO:GO:0040009 GO:GO:0008408 GO:GO:0051345
GO:GO:0010259 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0000723 GO:GO:0010225
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000403 GO:GO:0000731 GO:GO:0000405
GO:GO:0009378 GO:GO:0051880 GO:GO:0031297 GO:GO:0032389
GO:GO:0032066 IPI:IPI00960063 ProteinModelPortal:F1LTH9
Ensembl:ENSRNOT00000058805 Uniprot:F1LTH9
Length = 1448
Score = 614 (221.2 bits), Expect = 1.4e-60, Sum P(2) = 1.4e-60
Identities = 150/402 (37%), Positives = 239/402 (59%)
Query: 87 FGIPAYRANQQEIINAVLSGR-DVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQ 145
FG +++ Q ++I++VL R D +V+MA G GKSLC+Q P V I +V+SPL+SL++
Sbjct: 553 FGHCSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYTGKIGIVISPLISLME 612
Query: 146 DQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYV--TPEKISKSKRFMSK 203
DQV+ L IPA +L S K I + K + + K++ V T + R + +
Sbjct: 613 DQVLQLEMSNIPACLLGSAQPKN----ILGDI-KLQSKYKVVEVWFTYQYCMNQFRMIQE 667
Query: 204 LEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQN 263
+C G ++LI++DEAHC S+WGHDFR ++ LG LKT P VP++AL+ATA+ ++
Sbjct: 668 A-RCS-VG-ITLIAVDEAHCISEWGHDFRSSFRTLGSLKTALPLVPVIALSATASSSIRE 724
Query: 264 DLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDE---IAKYIQESYPNSESGIV 320
D++ L+++ + +RPNL+ V K+ G ++ D + + ++ I+
Sbjct: 725 DIIRCLNLKDPHITCTGFDRPNLYLEVERKT--GNILQDLKPFLVRKTSSAWEFEGPTII 782
Query: 321 YCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGIN 380
YC SRK EQV EL + ++ YHA M I+ R+ +H R+ ++++Q +V T+AFGMGIN
Sbjct: 783 YCPSRKVTEQVTVELGKLNVACQAYHAGMKISERKDIHHRFLRDEIQCVVATIAFGMGIN 842
Query: 381 KPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADV-PRQSSMVFYENSG-- 437
K D+R VIH+ K +E+YYQE GRAGRDGL S C L + PAD ++ ++ N
Sbjct: 843 KADIRKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHLLWAPADFNTTRNRLIEIHNEKFR 902
Query: 438 LQNLYDIVRYSQYPLHWNIEKVRLVI--FE--KLQQVNLFCM 475
L L +V+ +Y LH + + ++++ FE +LQ+ +L M
Sbjct: 903 LHKLKMMVKMEKY-LHSSRCRRQIILSHFEDKRLQKASLAVM 943
Score = 48 (22.0 bits), Expect = 1.4e-60, Sum P(2) = 1.4e-60
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 574 SSALEFEL-DELRKELASISGG-ILPHSVLSSQLIRLISARKPSTMEEAS-SNHLEKII 629
S+A+ + L E + L SI+ +LP + + L + + A P ME A + KII
Sbjct: 1271 SAAVTYALFQEKKMSLHSIAENRLLPLTAVGMHLAQAVKAGHPLDMERAGLTPETRKII 1329
Score = 39 (18.8 bits), Expect = 1.2e-59, Sum P(2) = 1.2e-59
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 554 ISSVQKNTADNKKSTKRSLTSSALEFELDELRKELASISGGILP 597
+SS K + N+K T S S LE + E S SG +P
Sbjct: 1096 VSSETKPHSSNQKPTGSSTQQSNLEGAYSDKVPEKFS-SGSNIP 1138
>WB|WBGene00006944 [details] [associations]
symbol:wrn-1 species:6239 "Caenorhabditis elegans"
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA;IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040018 "positive regulation of
multicellular organism growth" evidence=IMP] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0018991 "oviposition"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0007049 "cell cycle" evidence=IMP] [GO:0010212
"response to ionizing radiation" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0005694 "chromosome" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006259 "DNA metabolic
process" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005662 "DNA replication factor A complex" evidence=IDA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0008340 GO:GO:0002009
GO:GO:0040007 GO:GO:0018991 GO:GO:0005694 GO:GO:0005654
GO:GO:0002119 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0010171 GO:GO:0040018 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0010212 GO:GO:0007049 GO:GO:0006310 GO:GO:0040035
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 KO:K10900 EMBL:FO080970
PIR:T16087 RefSeq:NP_495324.2 ProteinModelPortal:Q19546 SMR:Q19546
IntAct:Q19546 MINT:MINT-226609 STRING:Q19546 PaxDb:Q19546
EnsemblMetazoa:F18C5.2 GeneID:174081 KEGG:cel:CELE_F18C5.2
UCSC:F18C5.2 CTD:174081 WormBase:F18C5.2 HOGENOM:HOG000016918
InParanoid:Q19546 OMA:CSGFDRP NextBio:882429 Uniprot:Q19546
Length = 1056
Score = 627 (225.8 bits), Expect = 1.6e-60, P = 1.6e-60
Identities = 133/344 (38%), Positives = 217/344 (63%)
Query: 87 FGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQD 146
FG +R Q +++ VL G+D V+M+ G GKS+CYQLP++L + +VVSPL+SL+ D
Sbjct: 223 FGHKGFREKQWDVVRNVLGGKDQFVLMSTGYGKSVCYQLPSLLLNSMTVVVSPLISLMND 282
Query: 147 QVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEK 206
QV L + GI A L +++ + + + + ++ +Y++PE ++ S++ + L
Sbjct: 283 QVTTLVSKGIDAVKLDGHSTQIEWDQVANNMHR----IRFIYMSPEMVT-SQKGLELLTS 337
Query: 207 CHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFP--DVPMMALTATATQKVQND 264
C +SL++IDEAHC SQWGHDFR Y++L ++ + ++PM+ALTATAT +V++D
Sbjct: 338 CRK--HISLLAIDEAHCVSQWGHDFRNSYRHLAEIRNRSDLCNIPMIALTATATVRVRDD 395
Query: 265 LMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQ-ESYPNSESG---IV 320
++ L +RK + ++ +R NL+ V SS K + +++ +++ + G I+
Sbjct: 396 VIANLRLRKPLITTTSFDRKNLYISVH--SS--KDMAEDLGLFMKTDEVKGRHFGGPTII 451
Query: 321 YCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGIN 380
YC +++ + V LR+ G+ + +YHA + N REK H + ++K+ IV TVAFGMGI+
Sbjct: 452 YCQTKQMVDDVNCVLRRIGVRSAHYHAGLTKNQREKAHTDFMRDKITTIVATVAFGMGID 511
Query: 381 KPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADV 424
KPDVR VIH+ ++E+YYQE GRAGRDG PS C +F+ P D+
Sbjct: 512 KPDVRNVIHYGCPNNIESYYQEIGRAGRDGSPSICRVFWAPKDL 555
>UNIPROTKB|Q6P4G0 [details] [associations]
symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
EMBL:CH471099 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
TIGRFAMs:TIGR00614 GO:GO:0008026 EMBL:AC087749 HOGENOM:HOG000044388
IPI:IPI01015246 UniGene:Hs.632229 HGNC:HGNC:9950 HOVERGEN:HBG057065
ChiTaRS:RECQL5 InterPro:IPR010716 Pfam:PF06959 ProDom:PD120154
EMBL:BC063440 IPI:IPI00185769 ProteinModelPortal:Q6P4G0
STRING:Q6P4G0 PRIDE:Q6P4G0 Ensembl:ENST00000423245 UCSC:uc010dgk.3
ArrayExpress:Q6P4G0 Bgee:Q6P4G0 Uniprot:Q6P4G0
Length = 964
Score = 611 (220.1 bits), Expect = 5.4e-59, P = 5.4e-59
Identities = 139/319 (43%), Positives = 195/319 (61%)
Query: 127 AVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKM 186
AV++ GI +VVSPL++LIQDQV L L + L S S ++ K + LE+ + + K+
Sbjct: 40 AVVK-GITIVVSPLIALIQDQVDHLLTLKVRVSSLNSKLSAQERKELLADLEREKPQTKI 98
Query: 187 LYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFP 246
LY+TPE ++ S F L LS + +DEAHC SQWGHDFRPDY LG L+++
Sbjct: 99 LYITPE-MAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLG 157
Query: 247 DVPMMALTATATQKVQNDLMEMLHIRKCIKFVST-INRPNLFYMVREKSSVGKV---VID 302
P +ALTATAT +VQ D+ LH++K + T R NLFY V+ K + + D
Sbjct: 158 HAPCVALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKD 217
Query: 303 EIAKYI-QESYPN-SESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMR 360
K + QE+ S GIVYC +R+ CEQ+A EL RG++A YHA + + R V
Sbjct: 218 FCLKALGQEADKGLSGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQND 277
Query: 361 WSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFR 420
W + K+ VIV T++FGMG++K +VRFV H +++KS+ YYQESGRAGRDG PS C L++
Sbjct: 278 WMEEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYS 337
Query: 421 PADVPRQSSMVFYENSGLQ 439
D + S ++ E + LQ
Sbjct: 338 RNDRDQVSFLIRKEVAKLQ 356
>ZFIN|ZDB-GENE-070702-2 [details] [associations]
symbol:wrn "Werner syndrome" species:7955 "Danio
rerio" [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0044237
"cellular metabolic process" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00474 SMART:SM00490
SMART:SM00956 ZFIN:ZDB-GENE-070702-2 GO:GO:0005524 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0005622 GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:BX537303 IPI:IPI00993584
ProteinModelPortal:E9QGF6 Ensembl:ENSDART00000136531 Uniprot:E9QGF6
Length = 1436
Score = 477 (173.0 bits), Expect = 8.9e-59, Sum P(2) = 8.9e-59
Identities = 113/304 (37%), Positives = 181/304 (59%)
Query: 87 FGIPAYRANQQEIINAVLSGR-DVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQ 145
FG +++ Q ++I ++L+ R D LV+MA G GKSLC+Q P V + I++V+SPL++L++
Sbjct: 439 FGHHSFKPVQWKVIQSILTERRDNLVVMATGYGKSLCFQFPPVYCQTISVVISPLIALME 498
Query: 146 DQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLE 205
DQV+ L IPA L S +K + + + G+ +++Y+TPE S + + +L+
Sbjct: 499 DQVLQLTMSNIPACFLGSAQTKNLNEQVKR------GDFRVVYMTPEFCSGNIPLLVQLD 552
Query: 206 KCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDL 265
+ G LSLI++DEAHC SQWGHDFR Y+ LG LK P VP +ALTATA+ +++D+
Sbjct: 553 RT--VG-LSLIAVDEAHCISQWGHDFRSAYRELGKLKKNLPTVPFLALTATASPSIRDDI 609
Query: 266 MEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQES----YPNSESGIVY 321
++ LH+ + ++ +RPNL+ V KS G V+ D + +++ + Y S IVY
Sbjct: 610 IKSLHLINPMITCTSFDRPNLYLDVNRKS--GDVIQD-LKRFLVKKKGGGYEFEGSAIVY 666
Query: 322 CFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVI---VGTVAFGMG 378
C S+KE E+V L + I YHA + I R + ++ ++++QV V V G
Sbjct: 667 CPSKKEAERVTTALFKLDIPCGVYHAGLSIKQRRETQHQFMRDEIQVHAYDVAAVVSVPG 726
Query: 379 INKP 382
+N P
Sbjct: 727 VNPP 730
Score = 199 (75.1 bits), Expect = 8.9e-59, Sum P(2) = 8.9e-59
Identities = 52/139 (37%), Positives = 76/139 (54%)
Query: 369 IVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQS 428
+V TVAFGMGINK D+R VIH+ K +E+YYQE GRAGRDGLPS C + + P D+
Sbjct: 770 VVATVAFGMGINKSDIRKVIHYGAPKEMESYYQEIGRAGRDGLPSACHVLWMPGDMALNK 829
Query: 429 SMVFYENSGLQNLYDIVRYSQYPLHWNIEKVR--LVI--FEKLQQVNLFCMVVLAGHAQC 484
++ S Y I ++ + N K R L++ FE +++ +L G +QC
Sbjct: 830 FILNQSKSERFRSYKIDMMAKMEKYLNSTKCRRKLILCHFED-KRLRKVTSGIL-GSSQC 887
Query: 485 IISLLQDIQDNNQRLTMLQ 503
+ + N + L +LQ
Sbjct: 888 CDNCRSGV--NEEDLEVLQ 904
Score = 42 (19.8 bits), Expect = 8.9e-11, Sum P(2) = 8.9e-11
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 308 IQESYPNSESG--IVYCFSRKECEQVAQELR 336
+++ P E G +VY R +C ++++LR
Sbjct: 28 LEDHLPYLEFGGTVVYSQERHDCSFLSEDLR 58
Score = 39 (18.8 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 213 LSLISIDEAHCCSQWGHD 230
LS ++ ++ CC +W D
Sbjct: 149 LSDLANEKLRCCEKWSLD 166
>TIGR_CMR|BA_1505 [details] [associations]
symbol:BA_1505 "ATP-dependent DNA helicase RecQ"
species:198094 "Bacillus anthracis str. Ames" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614
GO:GO:0008026 HSSP:P15043 HOGENOM:HOG000044388 KO:K03654
OMA:DALIIMP RefSeq:NP_843957.1 RefSeq:YP_018128.2
RefSeq:YP_027663.1 ProteinModelPortal:Q81SY8 DNASU:1087356
EnsemblBacteria:EBBACT00000009666 EnsemblBacteria:EBBACT00000015103
EnsemblBacteria:EBBACT00000023330 GeneID:1087356 GeneID:2817068
GeneID:2848363 KEGG:ban:BA_1505 KEGG:bar:GBAA_1505 KEGG:bat:BAS1394
ProtClustDB:CLSK916267 BioCyc:BANT260799:GJAJ-1468-MONOMER
BioCyc:BANT261594:GJ7F-1530-MONOMER Uniprot:Q81SY8
Length = 509
Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
Identities = 152/447 (34%), Positives = 249/447 (55%)
Query: 87 FGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQD 146
FG +R Q+ +I +L G+DV+ ++ G GKS+CYQ P ++REG LVVSPLLSL++D
Sbjct: 11 FGYSEFRPGQKGVITDLLEGKDVIAMLPTGRGKSMCYQFPGLMREGTVLVVSPLLSLMED 70
Query: 147 QVMCLAALGIPAHMLTSTTSKE-DEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLE 205
QV L + + ++ + + +EK +A++K K ++V+PE + +S+ + +L+
Sbjct: 71 QVTQLKYV-VKDRVIAFNSFRTLNEK--REAMKK-LSSYKFIFVSPEML-QSELLIRELK 125
Query: 206 KCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDL 265
K H +SL +DEAHC SQWG+DFRPDYK L ++ ++ALTATAT+ V D+
Sbjct: 126 KIH----ISLFVVDEAHCISQWGYDFRPDYKKLNVVIENIGSPTVLALTATATKGVLQDI 181
Query: 266 MEMLHIRKCIKFVSTINRPNLFYMVR--EKSSVGKVVIDEIAKYIQESYPNSESGIVYCF 323
+ L+++ + V +I+RPN+ V+ E K + E Y+Q P GIVYC
Sbjct: 182 ADSLNLKGAAEHVYSIDRPNIAMDVQFVETIEEKKEALLEQVMYLQG--P----GIVYCS 235
Query: 324 SRKECEQVAQELRQRGISA-DYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKP 382
SR E++ + LR +G++ +YH M+ R + ++ N+LQ+++ T AFGMG+NK
Sbjct: 236 SRAWTERLTEYLRGKGVTGVAFYHGGMEHEERMLIQQQFMNNQLQLVICTSAFGMGVNKA 295
Query: 383 DVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFYE---NSGLQ 439
+ R++IH ++ +Y QE GRAGRDG PS +L P D S++ E S +Q
Sbjct: 296 NTRYIIHFHYPTNIASYLQEIGRAGRDGEPSIAILLCSPLDHDLPISIIEDELPSKSQIQ 355
Query: 440 NLYDIVRYSQYPL-HWNIEKVRLVIFEKL---QQVNLFCMVVL--AGHAQCIISLLQDIQ 493
L+ +++ + IE V + + +Q F L G Q LL+ +
Sbjct: 356 FLFSLLQERMFQTKELPIEDVEEICYNAARFNEQYWRFVRYHLEQVGIIQQRRLLLEGLS 415
Query: 494 DNNQRLTMLQLVDKMKIKLKEIDSDLK 520
D M +L+ +++I+L+ S+L+
Sbjct: 416 DE----IMNRLIAEVEIRLRNKYSELE 438
>ASPGD|ASPL0000072255 [details] [associations]
symbol:recQ species:162425 "Emericella nidulans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 EMBL:BN001303 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 TIGRFAMs:TIGR00614 GO:GO:0008026
HOGENOM:HOG000044388 ProteinModelPortal:C8V8Q7
EnsemblFungi:CADANIAT00006022 OMA:ARPNIHY Uniprot:C8V8Q7
Length = 541
Score = 412 (150.1 bits), Expect = 2.7e-56, Sum P(3) = 2.7e-56
Identities = 87/200 (43%), Positives = 124/200 (62%)
Query: 96 QQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMCLAALG 155
Q+++I A + G DV + + GKSLCYQLPA+ G+ +VV PLLSL+ DQV L ALG
Sbjct: 10 QRDVIAAAVEGHDVFLQASTSFGKSLCYQLPAMTTHGVTVVVCPLLSLMTDQVNALQALG 69
Query: 156 IPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSL 215
+P + ST S + + I + L G +++LYVTPE + ++ F L+ H L
Sbjct: 70 VPVATINSTVSLAERRVILEDLLSGHPRIRLLYVTPE-LCQNNTFRRNLQTMHKQRELVR 128
Query: 216 ISIDEAHCCSQWGHDFRPDYKNLGILKTQF--PDVPMMALTATATQKVQNDLMEMLHIR- 272
I+IDEAHC S+WGHDFRP YK L + P VP+ ALTATAT +V+ D++ +L +
Sbjct: 129 IAIDEAHCISEWGHDFRPAYKALSWFRHSLTNPPVPISALTATATSQVRTDIINILGLNP 188
Query: 273 KCIKFVSTIN-RPNLFYMVR 291
+ +K ST + RPN+ Y +R
Sbjct: 189 RRLKIFSTPSARPNIHYEIR 208
Score = 173 (66.0 bits), Expect = 2.7e-56, Sum P(3) = 2.7e-56
Identities = 47/119 (39%), Positives = 64/119 (53%)
Query: 317 SGIVYCFSRKECEQVAQELRQRG--ISADYYHADMDINAREKVHMRW---SKNKLQ---- 367
SGIVY +R E++A L Q I A YHA + R +V W K Q
Sbjct: 255 SGIVYVSTRVAAERLAHVLCQSDNRIRAVAYHAGLVAADRVRVQNEWIAPQKQPQQRGPG 314
Query: 368 -------VIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFF 419
+IV T AFGMGI+ P+VRFV+H S ++ E + QESGRAGRDG + ++++
Sbjct: 315 AKPVTFYIIVATTAFGMGIDNPEVRFVVHWSPPRTFEGFVQESGRAGRDGRAAASIVYY 373
Score = 40 (19.1 bits), Expect = 2.7e-56, Sum P(3) = 2.7e-56
Identities = 20/88 (22%), Positives = 44/88 (50%)
Query: 581 LDELRKELASISGGILPHSVLSSQ----LIRLISARKPSTME-----EASSN--H--LEK 627
L+ LR+++ +++ + +Q L+R + ARK S + E ++ H +++
Sbjct: 382 LNHLRRDIENVNNSTGGRNAGLNQDKVSLLRNLYARKQSFEKVVRYCETTTRCRHELIKE 441
Query: 628 IIGKLKTGKYGSRILEVISKCGNSEQQH 655
G L+ K GS++ ++ S C + + H
Sbjct: 442 FFGDLELVKMGSQVSKLQSAC-HDDNDH 468
>UNIPROTKB|Q47WD5 [details] [associations]
symbol:CPS_4237 "RecQ domain protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514 TIGRFAMs:TIGR00614
GO:GO:0008026 HOGENOM:HOG000044388 KO:K03654 RefSeq:YP_270887.1
ProteinModelPortal:Q47WD5 STRING:Q47WD5 GeneID:3521770
KEGG:cps:CPS_4237 PATRIC:21471339 OMA:GHNFRPD
ProtClustDB:CLSK906704 BioCyc:CPSY167879:GI48-4247-MONOMER
Uniprot:Q47WD5
Length = 690
Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
Identities = 135/333 (40%), Positives = 193/333 (57%)
Query: 84 LNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSL 143
L FG +R Q++ I +L G+ L I G GKSLCYQL A+ + LVVSPLL+L
Sbjct: 18 LETFGFDGFRPGQEQTITQLLKGQSSLSIFPTGSGKSLCYQLTALHLPHLTLVVSPLLAL 77
Query: 144 IQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSK 203
++DQ+ LA+ GI A + ST + + + + +G++K+L V+ E+ K++RF
Sbjct: 78 MKDQLSFLASKGIKAASIDSTLKGNEAQTVMAGVR--DGDIKVLMVSVERF-KNERFRQF 134
Query: 204 LEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQN 263
+E +S++ +DEAHC S+WGH+FRPDY L ++ LTATAT+KV+
Sbjct: 135 IESVP----VSMLVVDEAHCISEWGHNFRPDYLKLPSYCQALNISLVLLLTATATRKVKQ 190
Query: 264 DLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSE-SGIVYC 322
D+ IR V T FY SV V K +++ + +GIVY
Sbjct: 191 DMAAKFAIRD-EHIVQTG-----FYRSNLDLSVLPVTQAHKNKQLEQIISAQQGAGIVYV 244
Query: 323 FSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKP 382
+ E VAQ L+Q+GI+A YHA D + R ++ + K+QVIV T+AFGMGI+K
Sbjct: 245 TLQHSAETVAQYLKQQGINACAYHAGFDSDTRSQIQQDFMAGKIQVIVATIAFGMGIDKS 304
Query: 383 DVRFVIHHSLSKSVETYYQESGRAGRDGLPSEC 415
++RFVIH+ L KS+E Y QE GRAGRDGLPS+C
Sbjct: 305 NIRFVIHYDLPKSIENYSQEIGRAGRDGLPSQC 337
>TIGR_CMR|CPS_4237 [details] [associations]
symbol:CPS_4237 "RecQ domain protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0004386 "helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514 TIGRFAMs:TIGR00614
GO:GO:0008026 HOGENOM:HOG000044388 KO:K03654 RefSeq:YP_270887.1
ProteinModelPortal:Q47WD5 STRING:Q47WD5 GeneID:3521770
KEGG:cps:CPS_4237 PATRIC:21471339 OMA:GHNFRPD
ProtClustDB:CLSK906704 BioCyc:CPSY167879:GI48-4247-MONOMER
Uniprot:Q47WD5
Length = 690
Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
Identities = 135/333 (40%), Positives = 193/333 (57%)
Query: 84 LNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSL 143
L FG +R Q++ I +L G+ L I G GKSLCYQL A+ + LVVSPLL+L
Sbjct: 18 LETFGFDGFRPGQEQTITQLLKGQSSLSIFPTGSGKSLCYQLTALHLPHLTLVVSPLLAL 77
Query: 144 IQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSK 203
++DQ+ LA+ GI A + ST + + + + +G++K+L V+ E+ K++RF
Sbjct: 78 MKDQLSFLASKGIKAASIDSTLKGNEAQTVMAGVR--DGDIKVLMVSVERF-KNERFRQF 134
Query: 204 LEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQN 263
+E +S++ +DEAHC S+WGH+FRPDY L ++ LTATAT+KV+
Sbjct: 135 IESVP----VSMLVVDEAHCISEWGHNFRPDYLKLPSYCQALNISLVLLLTATATRKVKQ 190
Query: 264 DLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSE-SGIVYC 322
D+ IR V T FY SV V K +++ + +GIVY
Sbjct: 191 DMAAKFAIRD-EHIVQTG-----FYRSNLDLSVLPVTQAHKNKQLEQIISAQQGAGIVYV 244
Query: 323 FSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKP 382
+ E VAQ L+Q+GI+A YHA D + R ++ + K+QVIV T+AFGMGI+K
Sbjct: 245 TLQHSAETVAQYLKQQGINACAYHAGFDSDTRSQIQQDFMAGKIQVIVATIAFGMGIDKS 304
Query: 383 DVRFVIHHSLSKSVETYYQESGRAGRDGLPSEC 415
++RFVIH+ L KS+E Y QE GRAGRDGLPS+C
Sbjct: 305 NIRFVIHYDLPKSIENYSQEIGRAGRDGLPSQC 337
>TAIR|locus:2180255 [details] [associations]
symbol:RECQSIM "RECQ helicase SIM" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006281 "DNA repair" evidence=IDA] [GO:0043138 "3'-5' DNA
helicase activity" evidence=IDA] [GO:0006270 "DNA replication
initiation" evidence=RCA] [GO:0006275 "regulation of DNA
replication" evidence=RCA] [GO:0051726 "regulation of cell cycle"
evidence=RCA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR009060 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 EMBL:AC007478
InterPro:IPR015940 PROSITE:PS50030 GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 eggNOG:COG0514
TIGRFAMs:TIGR00614 GO:GO:0008026 GO:GO:0043138 EMBL:AC069556
HSSP:P15043 EMBL:AJ404475 EMBL:AY059754 EMBL:AY133823
IPI:IPI00537732 RefSeq:NP_568499.1 UniGene:At.10179
ProteinModelPortal:Q9FT69 SMR:Q9FT69 IntAct:Q9FT69
EnsemblPlants:AT5G27680.1 GeneID:832830 KEGG:ath:AT5G27680
TAIR:At5g27680 HOGENOM:HOG000084012 InParanoid:Q9FT69 KO:K10900
OMA:CRAKILV PhylomeDB:Q9FT69 ProtClustDB:CLSN2689878
Genevestigator:Q9FT69 Uniprot:Q9FT69
Length = 858
Score = 408 (148.7 bits), Expect = 2.5e-55, Sum P(2) = 2.5e-55
Identities = 104/272 (38%), Positives = 157/272 (57%)
Query: 36 ERQSELKSLLEAFEASRGS--PIQYGGSSSTAVENWSGTFE----WDSRADDVRLNVFGI 89
E S+L+++ E E R S P+ S + +G E W+ R + + N FGI
Sbjct: 107 EVDSQLETVSEHSEEVRKSLAPVFMESSCFPEGQLLNGCSEASSSWEKRVNSILRNRFGI 166
Query: 90 PAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQVM 149
+ R+ Q+E ++ ++ +D LV+ A G GKSLC+Q+PA+L + +V+SPL+SL+ DQ +
Sbjct: 167 SSLRSFQREALSTWVAHKDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCL 226
Query: 150 CLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHH 209
L+ + A L S + D KA++ G +++YV PE + + + + KL K H
Sbjct: 227 KLSRHKVSACFLGS--GQLDNCIEEKAMQ---GMYQIIYVCPETVVRLIKPLQKLAKTH- 280
Query: 210 AGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFP---------DVPMMALTATATQK 260
G ++L +IDEAHC S+WGHDFRP Y+ L +L+ F DVP+MALTATAT
Sbjct: 281 -G-IALFAIDEAHCVSKWGHDFRPHYRKLSVLRENFCASNLEFLEYDVPIMALTATATVN 338
Query: 261 VQNDLMEMLHIRKCIKFVST-INRPNLFYMVR 291
VQ D++E LH+ K K V T RPNL + V+
Sbjct: 339 VQEDILESLHLSKETKIVLTSFFRPNLQFSVK 370
Score = 238 (88.8 bits), Expect = 2.5e-55, Sum P(2) = 2.5e-55
Identities = 50/113 (44%), Positives = 75/113 (66%)
Query: 319 IVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMG 378
I+Y +RKE +A+ L G+ A Y+A + +VH + NKLQV+V T+AFGMG
Sbjct: 501 IIYVPTRKESVNIAKYLCGVGLKAAAYNASLPKKHLRQVHQDFHDNKLQVVVATIAFGMG 560
Query: 379 INKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMV 431
I+K +VR +IH+ +S+E YYQE+GRAGRDG +EC+L+ AD+ R +++
Sbjct: 561 IDKKNVRKIIHYGWLQSLEAYYQEAGRAGRDGELAECVLY---ADLSRAPTLL 610
>UNIPROTKB|Q8EEK1 [details] [associations]
symbol:SO_2380 "ATP-dependent DNA helicase RecQ family"
species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614
GO:GO:0008026 HSSP:P15043 HOGENOM:HOG000044388 KO:K03654
OMA:GHNFRPD ProtClustDB:CLSK906704 RefSeq:NP_717970.1
ProteinModelPortal:Q8EEK1 GeneID:1170099 KEGG:son:SO_2380
PATRIC:23524381 Uniprot:Q8EEK1
Length = 654
Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
Identities = 145/415 (34%), Positives = 224/415 (53%)
Query: 87 FGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQD 146
FG +R Q E+I +L+G+ L I G GKSLCYQ A+ + LVVSPLL+LI+D
Sbjct: 22 FGFSEFRPGQGEVITQLLAGQSSLAIFPTGSGKSLCYQFTALQLPHLTLVVSPLLALIKD 81
Query: 147 QVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEK 206
Q+ L GI A + ST + E + + + E G+LK+L V+ E+ K++RF ++
Sbjct: 82 QLNFLQQKGIKAASIDSTLTPEQTQQVMR--EARSGQLKLLMVSVERF-KNERFRQFIQS 138
Query: 207 CHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPM-MALTATATQKVQNDL 265
LS++ +DEAHC S+WGH+FRPDY L + +P+ + LTATAT+KV+ D+
Sbjct: 139 IP----LSMLVVDEAHCISEWGHNFRPDYLKLPDYCREL-SIPLVLLLTATATRKVKQDM 193
Query: 266 MEMLHIRKCIKFVST-INRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFS 324
I K V T R NL V +S K+ I K +S+ + GIVY
Sbjct: 194 AIRFDI-KPQHIVQTGFYRSNLDLTVLPVASENKL---RILKQQLQSFDGA--GIVYVTL 247
Query: 325 RKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDV 384
+ E+VA +L G A YHA D + R+++ + + Q++V T+AFGMGI+K ++
Sbjct: 248 QHTAEEVASQLCSMGFVAQAYHAGFDDDKRQQIQHDFMLGQTQIVVATIAFGMGIDKSNI 307
Query: 385 RFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFYENSGLQNLYDI 444
RFVIH+ L KS+E Y QE GRAGRDG S C+ + + V+ + L ++ +
Sbjct: 308 RFVIHYDLPKSIENYCQEIGRAGRDGQLSHCVTLANLDGINTVENFVYGDTPELASIATV 367
Query: 445 V-RYSQYPL--HWNIEKVRLVIFEKLQQVNLFCMVV---LAGHAQCIISLLQDIQ 493
+ SQ +W ++ +L ++ + L ++V L G + + + D+Q
Sbjct: 368 IDSISQETQANYWEVQLNQLANQSNIRLLPLKTLLVQLELQGVIKPLYAYYADVQ 422
>TIGR_CMR|SO_2380 [details] [associations]
symbol:SO_2380 "RecQ domain protein" species:211586
"Shewanella oneidensis MR-1" [GO:0003674 "molecular_function"
evidence=ND] [GO:0006310 "DNA recombination" evidence=ISS]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614 GO:GO:0008026
HSSP:P15043 HOGENOM:HOG000044388 KO:K03654 OMA:GHNFRPD
ProtClustDB:CLSK906704 RefSeq:NP_717970.1 ProteinModelPortal:Q8EEK1
GeneID:1170099 KEGG:son:SO_2380 PATRIC:23524381 Uniprot:Q8EEK1
Length = 654
Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
Identities = 145/415 (34%), Positives = 224/415 (53%)
Query: 87 FGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQD 146
FG +R Q E+I +L+G+ L I G GKSLCYQ A+ + LVVSPLL+LI+D
Sbjct: 22 FGFSEFRPGQGEVITQLLAGQSSLAIFPTGSGKSLCYQFTALQLPHLTLVVSPLLALIKD 81
Query: 147 QVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEK 206
Q+ L GI A + ST + E + + + E G+LK+L V+ E+ K++RF ++
Sbjct: 82 QLNFLQQKGIKAASIDSTLTPEQTQQVMR--EARSGQLKLLMVSVERF-KNERFRQFIQS 138
Query: 207 CHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPM-MALTATATQKVQNDL 265
LS++ +DEAHC S+WGH+FRPDY L + +P+ + LTATAT+KV+ D+
Sbjct: 139 IP----LSMLVVDEAHCISEWGHNFRPDYLKLPDYCREL-SIPLVLLLTATATRKVKQDM 193
Query: 266 MEMLHIRKCIKFVST-INRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFS 324
I K V T R NL V +S K+ I K +S+ + GIVY
Sbjct: 194 AIRFDI-KPQHIVQTGFYRSNLDLTVLPVASENKL---RILKQQLQSFDGA--GIVYVTL 247
Query: 325 RKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDV 384
+ E+VA +L G A YHA D + R+++ + + Q++V T+AFGMGI+K ++
Sbjct: 248 QHTAEEVASQLCSMGFVAQAYHAGFDDDKRQQIQHDFMLGQTQIVVATIAFGMGIDKSNI 307
Query: 385 RFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFYENSGLQNLYDI 444
RFVIH+ L KS+E Y QE GRAGRDG S C+ + + V+ + L ++ +
Sbjct: 308 RFVIHYDLPKSIENYCQEIGRAGRDGQLSHCVTLANLDGINTVENFVYGDTPELASIATV 367
Query: 445 V-RYSQYPL--HWNIEKVRLVIFEKLQQVNLFCMVV---LAGHAQCIISLLQDIQ 493
+ SQ +W ++ +L ++ + L ++V L G + + + D+Q
Sbjct: 368 IDSISQETQANYWEVQLNQLANQSNIRLLPLKTLLVQLELQGVIKPLYAYYADVQ 422
>TAIR|locus:2029799 [details] [associations]
symbol:AT1G27880 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;ISS] [GO:0042631 "cellular response
to water deprivation" evidence=IEP] [GO:0006260 "DNA replication"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0008283 "cell proliferation" evidence=RCA] [GO:0051567 "histone
H3-K9 methylation" evidence=RCA] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 EMBL:AC079280 GO:GO:0006310
GO:GO:0042631 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
eggNOG:COG0514 TIGRFAMs:TIGR00614 GO:GO:0008026 HSSP:P15043
HOGENOM:HOG000264957 KO:K10730 EMBL:AJ421618 EMBL:AK226619
IPI:IPI00519923 RefSeq:NP_174109.2 UniGene:At.40984
ProteinModelPortal:Q0WVW7 SMR:Q0WVW7 PaxDb:Q0WVW7 PRIDE:Q0WVW7
EnsemblPlants:AT1G27880.1 GeneID:839681 KEGG:ath:AT1G27880
KEGG:dosa:Os04t0486800-01 TAIR:At1g27880 InParanoid:Q0WVW7
OMA:THFWGRY PhylomeDB:Q0WVW7 ProtClustDB:CLSN2680265
Genevestigator:Q0WVW7 Uniprot:Q0WVW7
Length = 911
Score = 513 (185.6 bits), Expect = 2.1e-48, P = 2.1e-48
Identities = 124/339 (36%), Positives = 192/339 (56%)
Query: 84 LN-VFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLS 142
LN V+G ++R Q + I +L G ++++ G GKSLCYQ+PA++ GI LVVSPL+S
Sbjct: 261 LNLVYGYDSFRDGQLQAIKMILGGSSTMLVLPTGAGKSLCYQIPAMILPGITLVVSPLVS 320
Query: 143 LIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMS 202
L+ DQ+ L ++ I +L+S+ E+ + L+ EG +K+L+V+PE++ + F+S
Sbjct: 321 LMIDQLKHLPSI-IKGGLLSSSQRPEEATETLRKLK--EGIIKVLFVSPERLLNVE-FLS 376
Query: 203 KLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNL--GILKTQFPDVPMMALTATATQK 260
+ +SL+ +DEAHC S+W H+FRP Y L +L ++ ++A+TATAT
Sbjct: 377 MFRM---SLSVSLVVVDEAHCVSEWSHNFRPSYMRLKASMLFSELKAECILAMTATATTM 433
Query: 261 VQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIV 320
+M L I + R N F + S ++ D + Y S IV
Sbjct: 434 TLQAVMSSLEIPSTNLIQKSQLRDN-FELSVSLSGANRMK-DLLILMESPPYKEIRSIIV 491
Query: 321 YCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGIN 380
YC + E + +++ LR I+A YH+ + R ++ + NK++V+V TVAFGMG++
Sbjct: 492 YCKFQYETDMISKYLRDNNINAKGYHSGLPAKDRVRIQESFCSNKIRVVVATVAFGMGLD 551
Query: 381 KPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFF 419
K DV VIH S+ S+E Y QE GRAGRDG S C LF+
Sbjct: 552 KGDVGAVIHFSVPGSMEEYVQEIGRAGRDGRLSYCHLFY 590
>UNIPROTKB|F1RMJ3 [details] [associations]
symbol:BLM "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 InterPro:IPR012532 Pfam:PF00270 Pfam:PF08072
PROSITE:PS00690 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006260 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0008026 EMBL:CT757491 Ensembl:ENSSSCT00000002034
Uniprot:F1RMJ3
Length = 541
Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
Identities = 96/185 (51%), Positives = 123/185 (66%)
Query: 87 FGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQD 146
FG+ +R NQ E INA L G D ++M GGGKSLCYQLPA + G+ +V+SPL SLI D
Sbjct: 352 FGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSSGVTIVISPLRSLIVD 411
Query: 147 QVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEK 206
QV L +L IPA LT + + IY L K + +K+LYVTPEK+ S R +S LE
Sbjct: 412 QVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEKVCASNRLISTLEN 471
Query: 207 CHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLM 266
++ L+ IDEAHC SQWGHDFRPDYK + +L+ +FP VP+MALTATA +VQ D++
Sbjct: 472 LYNRKLLARFVIDEAHCVSQWGHDFRPDYKRMNMLRQKFPSVPVMALTATANPRVQKDIL 531
Query: 267 EMLHI 271
L I
Sbjct: 532 TQLKI 536
>FB|FBgn0040290 [details] [associations]
symbol:RecQ4 "RecQ4" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003678 "DNA
helicase activity" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=ISS;IDA] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS;IMP]
[GO:0006302 "double-strand break repair" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0045740 "positive
regulation of DNA replication" evidence=IMP] [GO:0010971 "positive
regulation of G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0006284 "base-excision repair" evidence=IMP] [GO:0051301 "cell
division" evidence=IMP] [GO:0002164 "larval development"
evidence=IMP] [GO:0007307 "eggshell chorion gene amplification"
evidence=IMP] [GO:0036292 "DNA rewinding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IDA]
[GO:0032508 "DNA duplex unwinding" evidence=IDA] [GO:0007095
"mitotic G2 DNA damage checkpoint" evidence=IGI;IMP]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0007095 EMBL:AE014296 GO:GO:0051301 GO:GO:0010971
GO:GO:0006284 GO:GO:0008284 GO:GO:0006260 GO:GO:0008270
GO:GO:0006310 GO:GO:0003697 GO:GO:0006302 GO:GO:0045740
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0007307
GO:GO:0002164 HSSP:P15043 KO:K10730 InterPro:IPR021110 Pfam:PF11719
GO:GO:0036292 FlyBase:FBgn0040290 RefSeq:NP_652607.1
UniGene:Dm.1556 ProteinModelPortal:Q9VSE6 SMR:Q9VSE6 IntAct:Q9VSE6
PRIDE:Q9VSE6 EnsemblMetazoa:FBtr0076729 GeneID:53438
KEGG:dme:Dmel_CG7487 UCSC:CG7487-RA CTD:53438 InParanoid:Q9VSE6
OMA:GMPASRR PhylomeDB:Q9VSE6 GenomeRNAi:53438 NextBio:841159
ArrayExpress:Q9VSE6 Bgee:Q9VSE6 Uniprot:Q9VSE6
Length = 1579
Score = 304 (112.1 bits), Expect = 1.4e-42, Sum P(2) = 1.4e-42
Identities = 89/261 (34%), Positives = 135/261 (51%)
Query: 84 LNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVL--RE--GIALVVSP 139
L++FG +R Q I LSG LV ++ G GKSLCYQLPA L R+ I LV+SP
Sbjct: 863 LHMFGHTNFRKGQDRAIMRTLSGLSSLVTLSTGSGKSLCYQLPAYLYSRKVGAITLVISP 922
Query: 140 LLSLIQDQVMCLAALGIPAHML-TSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSK 198
L+SL++DQV + + AH L T+ T+ + K I + + GE+ +L V+PE + +
Sbjct: 923 LVSLMEDQVTGVPHF-LRAHCLHTNQTAPQRMK-IQQMI--ANGEIDILLVSPEAVVAGE 978
Query: 199 RFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNL-GILKTQFPDVPMMALTATA 257
R ++ IDEAHC SQW H+FRP Y + +L+ ++ LTATA
Sbjct: 979 RATGFGAILRQLPPIAFACIDEAHCVSQWSHNFRPSYLMICKVLRKNLGVRTVLGLTATA 1038
Query: 258 TQKVQNDLMEMLHIRKCIK-FVSTINRP-NLFYMVREKSSVGKVVIDEIAKYIQESYPNS 315
T + ++ L I + +S I P NL V + + ++ + E +
Sbjct: 1039 TLPTRVSIINHLGISDGERGIISDIPLPDNLVLSVSKDENRDAALLQLLNS---ERFEPC 1095
Query: 316 ESGIVYCFSRKECEQVAQELR 336
+S I+YC R ECE++A +R
Sbjct: 1096 QSIIIYCTRRDECERIAGFIR 1116
Score = 238 (88.8 bits), Expect = 1.4e-42, Sum P(2) = 1.4e-42
Identities = 47/95 (49%), Positives = 65/95 (68%)
Query: 325 RKECEQVAQELRQR-GISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPD 383
R+E Q + R+R A+ YHA M + R V + N+L+++V T+AFGMGINKPD
Sbjct: 1122 RREPTQDQTKKRKRVNWQAEPYHAGMPASRRRTVQKAFMSNELRIVVATIAFGMGINKPD 1181
Query: 384 VRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLF 418
+R VIH+++ ++ E+Y QE GRAGRDGLPS C LF
Sbjct: 1182 IRAVIHYNMPRNFESYVQEIGRAGRDGLPSHCHLF 1216
>MGI|MGI:1931028 [details] [associations]
symbol:Recql4 "RecQ protein-like 4" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000405 "bubble DNA binding" evidence=ISO] [GO:0000733 "DNA
strand renaturation" evidence=ISO] [GO:0001501 "skeletal system
development" evidence=IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006260
"DNA replication" evidence=ISO] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0032508 "DNA duplex unwinding" evidence=ISO] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
[GO:0043473 "pigmentation" evidence=IMP] [GO:0045875 "negative
regulation of sister chromatid cohesion" evidence=IMP] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0048705 "skeletal system
morphogenesis" evidence=IMP] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 MGI:MGI:1931028 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0046872 GO:GO:0008284
GO:GO:0006260 GO:GO:0008270 GO:GO:0003676 GO:GO:0006310
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0048705 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043473 eggNOG:COG0514
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
GO:GO:0045875 CTD:9401 HOGENOM:HOG000264957 HOVERGEN:HBG065925
KO:K10730 InterPro:IPR021110 Pfam:PF11719 EMBL:AB039882
EMBL:AB175741 EMBL:AB042529 IPI:IPI00119366 IPI:IPI00462416
RefSeq:NP_478121.2 UniGene:Mm.18373 ProteinModelPortal:Q75NR7
SMR:Q75NR7 IntAct:Q75NR7 STRING:Q75NR7 PhosphoSite:Q75NR7
PRIDE:Q75NR7 DNASU:79456 Ensembl:ENSMUST00000036852 GeneID:79456
KEGG:mmu:79456 UCSC:uc007wlv.1 OrthoDB:EOG4CJVGG NextBio:349927
Bgee:Q75NR7 CleanEx:MM_RECQL4 Genevestigator:Q75NR7
GermOnline:ENSMUSG00000033762 Uniprot:Q75NR7
Length = 1216
Score = 454 (164.9 bits), Expect = 6.8e-40, P = 6.8e-40
Identities = 124/360 (34%), Positives = 182/360 (50%)
Query: 84 LNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVL---REG-IALVVSP 139
L G A+R Q+ I +LSG L+++ G GKSLCYQLPA+L R + LVVSP
Sbjct: 490 LERLGYRAFRPGQERAIMRILSGISTLLVLPTGAGKSLCYQLPALLYAQRSPCLTLVVSP 549
Query: 140 LLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEK-ISKSK 198
LLSL+ DQV L + + A L S +K+ + + K + + + +L V+PE +
Sbjct: 550 LLSLMDDQVSDLPSC-LKAACLHSGMTKKQRESVLKKVRAAQ--VHVLIVSPEALVGCGA 606
Query: 199 RFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNL-GILKTQFPDVPMMALTATA 257
R L + ++ IDE HC SQW H+FRP Y + +L+ + LTATA
Sbjct: 607 RGPGSLPQAAQLPPIAFACIDEVHCLSQWSHNFRPCYLRVCKVLREHMGVRCFLGLTATA 666
Query: 258 TQKVQNDLMEMLHIRKCIKFVSTINRP-NLFYMVREKSSVGKVVIDEIAKYIQ-ESYPNS 315
T+ D+ + L I + + N P NL V S+ + + +Q + +
Sbjct: 667 TRSTARDVAQHLGIAGEFELSGSANIPANLHLSV----SMDRDSDQALVTLLQGDRFRTL 722
Query: 316 ESGIVYCFSRK----------ECEQVAQELRQRGIS----ADYYHADMDINAREKVHMRW 361
+S I+YC + C + + R RG A+ YHA M R +V +
Sbjct: 723 DSVIIYCTRERIQNGWLALLRTCLSMVGDSRPRGCGPEAIAEAYHAGMSSQERRRVQQAF 782
Query: 362 SKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRP 421
+ L+++V TVAFGMG+++PDVR V+H L S E+Y Q GRAGRDG P+ C LF P
Sbjct: 783 MRGHLRMVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAIGRAGRDGKPAHCHLFMHP 842
>UNIPROTKB|F1RSP7 [details] [associations]
symbol:RECQL4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
GO:GO:0006310 Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074520
TIGRFAMs:TIGR00614 GO:GO:0008026 InterPro:IPR021110 Pfam:PF11719
EMBL:CU468594 Ensembl:ENSSSCT00000006477 Uniprot:F1RSP7
Length = 1204
Score = 452 (164.2 bits), Expect = 1.1e-39, P = 1.1e-39
Identities = 126/360 (35%), Positives = 193/360 (53%)
Query: 84 LNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVL--REG--IALVVSP 139
L G A+ Q+ ++ +LSG L+++ GGGKSLCYQLPA+L R + LV+SP
Sbjct: 480 LEQLGHQAFNPGQEHVVMRILSGMSTLLVLPTGGGKSLCYQLPALLYSRRSPCLTLVISP 539
Query: 140 LLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEG-ELKMLYVTPEKISKSK 198
L+SL+ DQV L G+ A + S SK+ AL+K ++++L ++PE ++ +
Sbjct: 540 LMSLMDDQVSGLPP-GLKAACIHSGMSKKQRN---SALQKARSAQVQVLMLSPEALAGAG 595
Query: 199 RFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNL-GILKTQFPDVPMMALTATA 257
+ L ++ IDEAHC SQW H+FRP Y + +L+ + + LTATA
Sbjct: 596 A--AGLAFLTQLPPVAFACIDEAHCLSQWSHNFRPCYLRVCKVLRERVGVSCFLGLTATA 653
Query: 258 TQKVQNDLMEMLHIRK--CIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNS 315
T+ D+ + L + + ++ TI NL V + ++ + + +
Sbjct: 654 TRSTALDVAQHLGVAEESVLRGQGTIPA-NLHLSVSMDRDPDQALVTLLQS---DRFCAL 709
Query: 316 ESGIVYCFSRKECEQVAQELRQ--R--------GIS----ADYYHADMDINAREKVHMRW 361
+S I+YC R++ E+VA LR R G + A+ YHA M R +V +
Sbjct: 710 DSIIIYCNRREDTERVAALLRTCLRETWALGPGGWAPEAVAEAYHAGMCSRERWRVQRAF 769
Query: 362 SKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRP 421
+ +L+V+V TVAFGMG+++PDVR V+H L S E+Y Q GRAGRDG P+ C LF RP
Sbjct: 770 MEGRLRVVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAVGRAGRDGQPAHCHLFLRP 829
>UNIPROTKB|K7GSZ9 [details] [associations]
symbol:RECQL4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
InterPro:IPR021110 Pfam:PF11719 EMBL:CU468594
Ensembl:ENSSSCT00000036186 Uniprot:K7GSZ9
Length = 1209
Score = 452 (164.2 bits), Expect = 1.2e-39, P = 1.2e-39
Identities = 126/360 (35%), Positives = 193/360 (53%)
Query: 84 LNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVL--REG--IALVVSP 139
L G A+ Q+ ++ +LSG L+++ GGGKSLCYQLPA+L R + LV+SP
Sbjct: 485 LEQLGHQAFNPGQEHVVMRILSGMSTLLVLPTGGGKSLCYQLPALLYSRRSPCLTLVISP 544
Query: 140 LLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEG-ELKMLYVTPEKISKSK 198
L+SL+ DQV L G+ A + S SK+ AL+K ++++L ++PE ++ +
Sbjct: 545 LMSLMDDQVSGLPP-GLKAACIHSGMSKKQRN---SALQKARSAQVQVLMLSPEALAGAG 600
Query: 199 RFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNL-GILKTQFPDVPMMALTATA 257
+ L ++ IDEAHC SQW H+FRP Y + +L+ + + LTATA
Sbjct: 601 A--AGLAFLTQLPPVAFACIDEAHCLSQWSHNFRPCYLRVCKVLRERVGVSCFLGLTATA 658
Query: 258 TQKVQNDLMEMLHIRK--CIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNS 315
T+ D+ + L + + ++ TI NL V + ++ + + +
Sbjct: 659 TRSTALDVAQHLGVAEESVLRGQGTIPA-NLHLSVSMDRDPDQALVTLLQS---DRFCAL 714
Query: 316 ESGIVYCFSRKECEQVAQELRQ--R--------GIS----ADYYHADMDINAREKVHMRW 361
+S I+YC R++ E+VA LR R G + A+ YHA M R +V +
Sbjct: 715 DSIIIYCNRREDTERVAALLRTCLRETWALGPGGWAPEAVAEAYHAGMCSRERWRVQRAF 774
Query: 362 SKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRP 421
+ +L+V+V TVAFGMG+++PDVR V+H L S E+Y Q GRAGRDG P+ C LF RP
Sbjct: 775 MEGRLRVVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAVGRAGRDGQPAHCHLFLRP 834
>UNIPROTKB|F1RV44 [details] [associations]
symbol:RECQL4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048705 "skeletal system morphogenesis" evidence=IEA]
[GO:0045875 "negative regulation of sister chromatid cohesion"
evidence=IEA] [GO:0043473 "pigmentation" evidence=IEA] [GO:0008284
"positive regulation of cell proliferation" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0046872 GO:GO:0008284 GO:GO:0008270
GO:GO:0003676 GO:GO:0006310 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0048705 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043473 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0008026 GO:GO:0045875 InterPro:IPR021110 Pfam:PF11719
OMA:DMPEEAI EMBL:CU468594 Ensembl:ENSSSCT00000006463 Uniprot:F1RV44
Length = 1227
Score = 452 (164.2 bits), Expect = 1.2e-39, P = 1.2e-39
Identities = 126/360 (35%), Positives = 193/360 (53%)
Query: 84 LNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVL--REG--IALVVSP 139
L G A+ Q+ ++ +LSG L+++ GGGKSLCYQLPA+L R + LV+SP
Sbjct: 503 LEQLGHQAFNPGQEHVVMRILSGMSTLLVLPTGGGKSLCYQLPALLYSRRSPCLTLVISP 562
Query: 140 LLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEG-ELKMLYVTPEKISKSK 198
L+SL+ DQV L G+ A + S SK+ AL+K ++++L ++PE ++ +
Sbjct: 563 LMSLMDDQVSGLPP-GLKAACIHSGMSKKQRN---SALQKARSAQVQVLMLSPEALAGAG 618
Query: 199 RFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNL-GILKTQFPDVPMMALTATA 257
+ L ++ IDEAHC SQW H+FRP Y + +L+ + + LTATA
Sbjct: 619 A--AGLAFLTQLPPVAFACIDEAHCLSQWSHNFRPCYLRVCKVLRERVGVSCFLGLTATA 676
Query: 258 TQKVQNDLMEMLHIRK--CIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNS 315
T+ D+ + L + + ++ TI NL V + ++ + + +
Sbjct: 677 TRSTALDVAQHLGVAEESVLRGQGTIPA-NLHLSVSMDRDPDQALVTLLQS---DRFCAL 732
Query: 316 ESGIVYCFSRKECEQVAQELRQ--R--------GIS----ADYYHADMDINAREKVHMRW 361
+S I+YC R++ E+VA LR R G + A+ YHA M R +V +
Sbjct: 733 DSIIIYCNRREDTERVAALLRTCLRETWALGPGGWAPEAVAEAYHAGMCSRERWRVQRAF 792
Query: 362 SKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRP 421
+ +L+V+V TVAFGMG+++PDVR V+H L S E+Y Q GRAGRDG P+ C LF RP
Sbjct: 793 MEGRLRVVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAVGRAGRDGQPAHCHLFLRP 852
>RGD|1307732 [details] [associations]
symbol:Recql4 "RecQ protein-like 4" species:10116 "Rattus
norvegicus" [GO:0000405 "bubble DNA binding" evidence=ISO]
[GO:0000733 "DNA strand renaturation" evidence=ISO] [GO:0001501
"skeletal system development" evidence=ISO] [GO:0003674
"molecular_function" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA;ISO]
[GO:0005575 "cellular_component" evidence=ND] [GO:0006260 "DNA
replication" evidence=ISO] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA;ISO] [GO:0032508
"DNA duplex unwinding" evidence=ISO] [GO:0043140 "ATP-dependent
3'-5' DNA helicase activity" evidence=ISO] [GO:0043473
"pigmentation" evidence=IEA;ISO] [GO:0045875 "negative regulation
of sister chromatid cohesion" evidence=IEA;ISO] [GO:0048705
"skeletal system morphogenesis" evidence=IEA;ISO]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
RGD:1307732 GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
GO:GO:0006310 Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074520
TIGRFAMs:TIGR00614 GO:GO:0008026 InterPro:IPR021110 Pfam:PF11719
IPI:IPI00366433 Ensembl:ENSRNOT00000045135 UCSC:RGD:1307732
ArrayExpress:D4A5W5 Uniprot:D4A5W5
Length = 1216
Score = 455 (165.2 bits), Expect = 2.4e-39, Sum P(2) = 2.4e-39
Identities = 125/360 (34%), Positives = 188/360 (52%)
Query: 84 LNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVL---REG-IALVVSP 139
L G +R Q+ + +LSG L+++ G GKSLCYQLPA+L R + LVVSP
Sbjct: 490 LEQLGHHTFRPGQERAVMRILSGISTLLVLPTGAGKSLCYQLPALLYAKRSPCLTLVVSP 549
Query: 140 LLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEK-ISKSK 198
LLSL+ DQV L + + A L S +K+ + + K + + + +L V+PE +
Sbjct: 550 LLSLMDDQVSDLPSC-LKAACLHSGMTKKQRESVLKKVRAAQ--VHVLIVSPEALVGCGA 606
Query: 199 RFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNL-GILKTQFPDVPMMALTATA 257
+ + L ++ IDE HC SQW H+FRP Y + +L+ + LTATA
Sbjct: 607 KGPANLPPAAQLPPVAFACIDEVHCLSQWSHNFRPCYLRVCKVLREHMGVRCFLGLTATA 666
Query: 258 TQKVQNDLMEMLHIRKCIKFVSTINRP-NLFYMVREKSSVGKVVIDEIAKYIQ-ESYPNS 315
T+ D+ + L I + ++ + + P NL V S+ + + +Q + +
Sbjct: 667 TRSTARDVAQHLGIAEELEVSGSASIPANLHLSV----SMDRDSDQALVTLLQGDRFRTL 722
Query: 316 ESGIVYCFSRKECEQVAQELRQ----------RGIS----ADYYHADMDINAREKVHMRW 361
+S I+YC RK+ E+VA LR RG A+ YHA M R++V +
Sbjct: 723 DSIIIYCARRKDTERVAALLRTCLSTVRDSKPRGRGPETLAEAYHAGMCSQERKRVQQAF 782
Query: 362 SKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRP 421
+ L+++V TVAFGMG+++PDVR V+H L S E+Y Q GRAGRDG P+ C LF P
Sbjct: 783 MQGHLRMVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAIGRAGRDGKPAHCHLFLHP 842
Score = 39 (18.8 bits), Expect = 2.4e-39, Sum P(2) = 2.4e-39
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 574 SSALEFELDELRK----ELASI 591
SSALEF++ EL ELAS+
Sbjct: 989 SSALEFDVVELADSMGWELASV 1010
>UNIPROTKB|O94761 [details] [associations]
symbol:RECQL4 "ATP-dependent DNA helicase Q4" species:9606
"Homo sapiens" [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0032508
"DNA duplex unwinding" evidence=IDA] [GO:0043140 "ATP-dependent
3'-5' DNA helicase activity" evidence=IMP] [GO:0000733 "DNA strand
renaturation" evidence=IDA] [GO:0000405 "bubble DNA binding"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IDA] [GO:0006260
"DNA replication" evidence=IDA] [GO:0006281 "DNA repair"
evidence=TAS] [GO:0007275 "multicellular organismal development"
evidence=TAS] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0007275 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0006260 GO:GO:0008270 GO:GO:0006281 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 TIGRFAMs:TIGR00614 GO:GO:0000733 GO:GO:0000405
EMBL:AB006532 EMBL:AB026546 EMBL:DQ176868 EMBL:BC011602
EMBL:BC013277 IPI:IPI00014925 RefSeq:NP_004251.3 UniGene:Hs.31442
PDB:2KMU PDBsum:2KMU ProteinModelPortal:O94761 SMR:O94761
DIP:DIP-48475N IntAct:O94761 MINT:MINT-1432307 STRING:O94761
PhosphoSite:O94761 PaxDb:O94761 PRIDE:O94761 GeneID:9401
KEGG:hsa:9401 UCSC:uc003zdj.3 CTD:9401 GeneCards:GC08M145738
HGNC:HGNC:9949 MIM:218600 MIM:266280 MIM:268400 MIM:603780
neXtProt:NX_O94761 Orphanet:1225 Orphanet:3021 Orphanet:221016
PharmGKB:PA34316 HOGENOM:HOG000264957 HOVERGEN:HBG065925
InParanoid:O94761 KO:K10730 EvolutionaryTrace:O94761
GenomeRNAi:9401 NextBio:35219 CleanEx:HS_RECQL4
Genevestigator:O94761 GermOnline:ENSG00000160957 InterPro:IPR021110
Pfam:PF11719 Uniprot:O94761
Length = 1208
Score = 448 (162.8 bits), Expect = 3.3e-39, P = 3.3e-39
Identities = 125/359 (34%), Positives = 187/359 (52%)
Query: 84 LNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVL--REG--IALVVSP 139
L G A+R Q+ + +LSG L+++ G GKSLCYQLPA+L R + LVVSP
Sbjct: 473 LEQLGHQAFRPGQERAVMRILSGISTLLVLPTGAGKSLCYQLPALLYSRRSPCLTLVVSP 532
Query: 140 LLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKR 199
LLSL+ DQV L A + + T K+ E + K ++ +L +TPE + +
Sbjct: 533 LLSLMDDQVSGLPPCLKAACIHSGMTRKQRESVLQKIRA---AQVHVLMLTPEALVGA-- 587
Query: 200 FMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNL-GILKTQFPDVPMMALTATAT 258
L ++ IDEAHC SQW H+FRP Y + +L+ + + LTATAT
Sbjct: 588 --GGLPPAAQLPPVAFACIDEAHCLSQWSHNFRPCYLRVCKVLRERMGVHCFLGLTATAT 645
Query: 259 QKVQNDLMEMLHIRKCIKFVSTINRP-NLFYMVREKSSVGKVVIDEIAKYIQ-ESYPNSE 316
++ +D+ + L + + P NL V S+ + + +Q + + N +
Sbjct: 646 RRTASDVAQHLAVAEEPDLHGPAPVPTNLHLSV----SMDRDTDQALLTLLQGKRFQNLD 701
Query: 317 SGIVYCFSRKECEQVAQELRQ------------RG--ISADYYHADMDINAREKVHMRWS 362
S I+YC R++ E++A LR R +A+ YHA M R +V +
Sbjct: 702 SIIIYCNRREDTERIAALLRTCLHAAWVPGSGGRAPKTTAEAYHAGMCSRERRRVQRAFM 761
Query: 363 KNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRP 421
+ +L+V+V TVAFGMG+++PDVR V+H L S E+Y Q GRAGRDG P+ C LF +P
Sbjct: 762 QGQLRVVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAVGRAGRDGQPAHCHLFLQP 820
>UNIPROTKB|F8WD97 [details] [associations]
symbol:RECQL "ATP-dependent DNA helicase Q1" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0008026 EMBL:AC006559 HGNC:HGNC:9948 ChiTaRS:RECQL
IPI:IPI00792775 ProteinModelPortal:F8WD97 SMR:F8WD97
Ensembl:ENST00000396093 ArrayExpress:F8WD97 Bgee:F8WD97
Uniprot:F8WD97
Length = 211
Score = 423 (154.0 bits), Expect = 3.6e-39, P = 3.6e-39
Identities = 87/207 (42%), Positives = 135/207 (65%)
Query: 6 ILQELENVEAEVRLVQEQIKQLVDRQDQLYERQSEL-KSLLEAFEAS-RGSPIQYGGSSS 63
+ +EL+++ +E+ V+ QI++L +RQ +L +++ L K + + E S G+ +Y SS
Sbjct: 7 LTEELDSITSELHAVEIQIQELTERQQELIQKKKVLTKKIKQCLEDSDAGASNEY--DSS 64
Query: 64 TAVENWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCY 123
A N F W + D+ NVF + +R Q E IN ++G++V ++M GGGKSLCY
Sbjct: 65 PAAWN-KEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCY 123
Query: 124 QLPAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGE 183
QLPA+ +G LV+ PL+SL++DQ+M L LGI A ML +++SKE K+++ + E
Sbjct: 124 QLPALCSDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSE 183
Query: 184 LKMLYVTPEKISKSKRFMSKLEKCHHA 210
LK++YVTPEKI+KSK FMS+LEK + A
Sbjct: 184 LKLIYVTPEKIAKSKMFMSRLEKAYEA 210
>UNIPROTKB|A5D786 [details] [associations]
symbol:RECQL4 "RECQL4 protein" species:9913 "Bos taurus"
[GO:0048705 "skeletal system morphogenesis" evidence=IEA]
[GO:0045875 "negative regulation of sister chromatid cohesion"
evidence=IEA] [GO:0043473 "pigmentation" evidence=IEA] [GO:0008284
"positive regulation of cell proliferation" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0008284 GO:GO:0003676 GO:GO:0006310
GO:GO:0048705 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043473 eggNOG:COG0514 GeneTree:ENSGT00550000074520
TIGRFAMs:TIGR00614 GO:GO:0008026 GO:GO:0045875 CTD:9401
HOGENOM:HOG000264957 HOVERGEN:HBG065925 KO:K10730
InterPro:IPR021110 Pfam:PF11719 OrthoDB:EOG4CJVGG EMBL:DAAA02037439
EMBL:BC140466 IPI:IPI00852560 RefSeq:NP_001091506.1
UniGene:Bt.27882 STRING:A5D786 Ensembl:ENSBTAT00000056581
GeneID:515472 KEGG:bta:515472 OMA:DMPEEAI NextBio:20871839
Uniprot:A5D786
Length = 1218
Score = 431 (156.8 bits), Expect = 2.9e-37, P = 2.9e-37
Identities = 122/362 (33%), Positives = 188/362 (51%)
Query: 84 LNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVL--REG--IALVVSP 139
L G A+ Q+ ++ VLSG L+++ G GKSLCYQLPA+L R + LV+SP
Sbjct: 487 LEQLGHHAFYPGQERVVMRVLSGMSTLLVLPTGAGKSLCYQLPALLYFRRSPCLTLVISP 546
Query: 140 LLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEG-ELKMLYVTPEKI--SK 196
L SL+ DQ+ L G+ + S +K+ AL+K +++L ++PE + +
Sbjct: 547 LTSLMDDQLSGLPP-GLKGACIHSGMTKKQRD---SALQKARAARVQVLMLSPEALVGAG 602
Query: 197 SKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNL-GILKTQFPDVPMMALTA 255
+ +S+L ++ +DEAHC SQW H+FRP Y + L+ Q + LTA
Sbjct: 603 ASTLLSQLPP------VAFACLDEAHCLSQWSHNFRPCYLRVCQTLRDQMGVHCFLGLTA 656
Query: 256 TATQKVQNDLMEMLHIRK--CIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYP 313
TAT+ D+ L + + ++ +TI NL V + ++ + + +
Sbjct: 657 TATRSTALDVAWHLGVTEESVLRGPATIP-DNLHLSVSSDRDPDQALVTLLRS---DRFR 712
Query: 314 NSESGIVYCFSRKECEQVAQELRQ------------RGISA--DYYHADMDINAREKVHM 359
S I+YC R++ E+VA LR R + A + YHA + R +V
Sbjct: 713 ALGSVIIYCHRREDTERVAALLRTCLCDAQDPGPHGRALEAVAEAYHAGLCSRERRRVQR 772
Query: 360 RWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFF 419
+ + +L+++V TVAFGMG+++PDVR V+H L S ETY Q GRAGRDG P+ C LF
Sbjct: 773 AFMEGRLRMVVATVAFGMGLDRPDVRAVLHLGLPPSFETYVQAVGRAGRDGQPAHCHLFL 832
Query: 420 RP 421
RP
Sbjct: 833 RP 834
>UNIPROTKB|Q33DM4 [details] [associations]
symbol:recql4 "RecQ4 protein" species:8355 "Xenopus laevis"
[GO:0000785 "chromatin" evidence=IDA] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006260 "DNA replication"
evidence=IMP] [GO:0035563 "positive regulation of chromatin
binding" evidence=IMP] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0006260
GO:GO:0008270 GO:GO:0000785 GO:GO:0003682 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0035563 CTD:9401
HOVERGEN:HBG065925 KO:K10730 InterPro:IPR021110 Pfam:PF11719
EMBL:AB213025 RefSeq:NP_001089182.1 UniGene:Xl.51337
ProteinModelPortal:Q33DM4 GeneID:734225 KEGG:xla:734225
Xenbase:XB-GENE-997817 Uniprot:Q33DM4
Length = 1503
Score = 276 (102.2 bits), Expect = 5.4e-36, Sum P(2) = 5.4e-36
Identities = 88/286 (30%), Positives = 150/286 (52%)
Query: 84 LNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVL---REG-IALVVSP 139
L+ G ++R+ Q++ + +LSG LVI++ G GKSLCYQLPA + R I+LV+SP
Sbjct: 722 LSELGYRSFRSGQEQAVMRILSGLSSLVILSTGMGKSLCYQLPAYMYAKRSRCISLVISP 781
Query: 140 LLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEK-GEGELKMLYVTPEK-ISKS 197
L+SL+ DQV L + A + S ++ + A+EK +G++ +L ++PE +
Sbjct: 782 LVSLMDDQVSGLPPK-LKAVCIHSNMTRTQRE---AAIEKVKQGKVHVLLLSPEALVGGG 837
Query: 198 KRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNL-GILKTQFPDVPMMALTAT 256
S L ++ IDEAHC S+W H+FRP Y L +L+ + ++ LTAT
Sbjct: 838 FSGSSCLPPADQLPPVAFACIDEAHCVSEWSHNFRPCYLRLCKVLRERLGVNCLLGLTAT 897
Query: 257 ATQKVQNDLMEMLHIRK----CIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESY 312
AT+ D+ L + ++ S PNL V + + ++ + K E +
Sbjct: 898 ATRATAEDVAHHLGVSPEGGIPVRMASV--PPNLHLSVSMDRNRDQALVT-LLK--GERF 952
Query: 313 PNSESGIVYCFSRKECEQVAQELRQ--RGISADYYHADMDINAREK 356
+S IVYC R+E ++++ LR +G++ A+ +N++E+
Sbjct: 953 GCLDSVIVYCTRREETQRISALLRTSLQGVTVS---ANSHLNSQEQ 995
Score = 204 (76.9 bits), Expect = 5.4e-36, Sum P(2) = 5.4e-36
Identities = 41/97 (42%), Positives = 62/97 (63%)
Query: 325 RKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDV 384
RK+ + + + R A+ YHA M R +V + +L+++V TVAFGMG++K DV
Sbjct: 1003 RKKAQALKKIRRPLKWIAESYHAGMSAAERRRVQNNFMCGQLRLVVATVAFGMGLDKSDV 1062
Query: 385 RFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRP 421
R +IH+++ K+ E+Y QE GRAGRDG ++C LF P
Sbjct: 1063 RGIIHYNMPKNFESYVQEIGRAGRDGKDAQCHLFLDP 1099
>UNIPROTKB|Q4JNX8 [details] [associations]
symbol:RTS "RECQL4-helicase-like protein" species:8355
"Xenopus laevis" [GO:0000785 "chromatin" evidence=IDA] [GO:0003682
"chromatin binding" evidence=IDA] [GO:0006270 "DNA replication
initiation" evidence=IMP] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0000785
GO:GO:0003682 GO:GO:0003676 GO:GO:0006270 Gene3D:4.10.60.10
SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 HOVERGEN:HBG065925 KO:K10730 InterPro:IPR021110
Pfam:PF11719 EMBL:DQ059311 RefSeq:NP_001089101.1 UniGene:Xl.86701
ProteinModelPortal:Q4JNX8 GeneID:733317 KEGG:xla:733317 CTD:733317
Uniprot:Q4JNX8
Length = 1500
Score = 270 (100.1 bits), Expect = 2.5e-35, Sum P(2) = 2.5e-35
Identities = 87/286 (30%), Positives = 150/286 (52%)
Query: 84 LNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVL---REG-IALVVSP 139
L+ G ++R+ Q++ + +LSG L I++ G GKSLCYQLPA + R I+LV+SP
Sbjct: 719 LSELGYRSFRSGQEQAVMRILSGFSSLGILSTGMGKSLCYQLPAYMYAKRSRCISLVISP 778
Query: 140 LLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEK-GEGELKMLYVTPEK-ISKS 197
L+SL+ DQV L+ + A + S ++ + A+EK +G++ +L ++PE +
Sbjct: 779 LVSLMDDQVSGLSPK-LKAVCIHSNMTRTQRE---AAIEKVKQGKVHVLLLSPEALVGGG 834
Query: 198 KRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNL-GILKTQFPDVPMMALTAT 256
S L ++ IDEAHC S+W H+FRP Y L +L+ + ++ LTAT
Sbjct: 835 FSGSSCLPPADQLPPVAFACIDEAHCVSEWSHNFRPCYLRLCKVLRERLGVNCLLGLTAT 894
Query: 257 ATQKVQNDLMEMLHIRK----CIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESY 312
AT+ D+ L + ++ S PNL V + + ++ + K E +
Sbjct: 895 ATRATAEDVAHHLGVSPEGGIPVRMASV--PPNLHLSVSMDRNRDQALVT-LLK--GERF 949
Query: 313 PNSESGIVYCFSRKECEQVAQELRQ--RGISADYYHADMDINAREK 356
+S IVYC R+E ++++ LR +G++ A+ +N++E+
Sbjct: 950 GCLDSVIVYCTRREETQRISALLRTSLQGVTVS---ANSHLNSQEQ 992
Score = 204 (76.9 bits), Expect = 2.5e-35, Sum P(2) = 2.5e-35
Identities = 41/97 (42%), Positives = 62/97 (63%)
Query: 325 RKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDV 384
RK+ + + + R A+ YHA M R +V + +L+++V TVAFGMG++K DV
Sbjct: 1000 RKKAQALKKIRRPLKWIAESYHAGMSAAERRRVQNNFMCGQLRLVVATVAFGMGLDKSDV 1059
Query: 385 RFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRP 421
R +IH+++ K+ E+Y QE GRAGRDG ++C LF P
Sbjct: 1060 RGIIHYNMPKNFESYVQEIGRAGRDGKDAQCHLFLDP 1096
>UNIPROTKB|F8WA66 [details] [associations]
symbol:RECQL "ATP-dependent DNA helicase Q1" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0008026 EMBL:AC006559 HGNC:HGNC:9948 ChiTaRS:RECQL
IPI:IPI01013557 ProteinModelPortal:F8WA66 SMR:F8WA66 PRIDE:F8WA66
Ensembl:ENST00000314748 ArrayExpress:F8WA66 Bgee:F8WA66
Uniprot:F8WA66
Length = 199
Score = 387 (141.3 bits), Expect = 3.4e-35, P = 3.4e-35
Identities = 80/195 (41%), Positives = 126/195 (64%)
Query: 6 ILQELENVEAEVRLVQEQIKQLVDRQDQLYERQSEL-KSLLEAFEAS-RGSPIQYGGSSS 63
+ +EL+++ +E+ V+ QI++L +RQ +L +++ L K + + E S G+ +Y SS
Sbjct: 7 LTEELDSITSELHAVEIQIQELTERQQELIQKKKVLTKKIKQCLEDSDAGASNEY--DSS 64
Query: 64 TAVENWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCY 123
A N F W + D+ NVF + +R Q E IN ++G++V ++M GGGKSLCY
Sbjct: 65 PAAWN-KEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCY 123
Query: 124 QLPAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGE 183
QLPA+ +G LV+ PL+SL++DQ+M L LGI A ML +++SKE K+++ + E
Sbjct: 124 QLPALCSDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSE 183
Query: 184 LKMLYVTPEKISKSK 198
LK++YVTPEKI+KSK
Sbjct: 184 LKLIYVTPEKIAKSK 198
>UNIPROTKB|H9KZS5 [details] [associations]
symbol:H9KZS5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0043473 "pigmentation"
evidence=IEA] [GO:0045875 "negative regulation of sister chromatid
cohesion" evidence=IEA] [GO:0048705 "skeletal system morphogenesis"
evidence=IEA] InterPro:IPR001650 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0004386
InterPro:IPR014001 PROSITE:PS51192 GeneTree:ENSGT00550000074520
EMBL:AADN02044351 EMBL:AADN02044352 EMBL:AADN02044353
Ensembl:ENSGALT00000018179 OMA:CATREST Uniprot:H9KZS5
Length = 252
Score = 201 (75.8 bits), Expect = 8.0e-26, Sum P(3) = 8.0e-26
Identities = 37/77 (48%), Positives = 54/77 (70%)
Query: 345 YHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESG 404
YHA + R +V + + +L+V+V TVAFGMG++K DVR V+H+++ ++ E+Y QE G
Sbjct: 175 YHAGLTAAERRRVQSAFMRGRLRVVVATVAFGMGLDKADVRAVLHYNMPRNFESYVQEIG 234
Query: 405 RAGRDGLPSECLLFFRP 421
RAGRDG P+ C LF P
Sbjct: 235 RAGRDGEPAWCHLFLDP 251
Score = 88 (36.0 bits), Expect = 8.0e-26, Sum P(3) = 8.0e-26
Identities = 14/21 (66%), Positives = 16/21 (76%)
Query: 218 IDEAHCCSQWGHDFRPDYKNL 238
IDEAHC S+W H+FRP Y L
Sbjct: 4 IDEAHCISEWSHNFRPSYLRL 24
Score = 58 (25.5 bits), Expect = 8.0e-26, Sum P(3) = 8.0e-26
Identities = 26/88 (29%), Positives = 39/88 (44%)
Query: 251 MALTATATQKVQNDLMEMLHI--RKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYI 308
+ALTATAT D+ L I + I PNL V + + +++ +
Sbjct: 61 LALTATATVATARDVAAHLGIPQQDGIAVQCAAVPPNLQLSVSVEWDRDRALVNLLRS-- 118
Query: 309 QESYPNSESGIVYCFSRKECEQVAQELR 336
E + S IVYC R++ +VA LR
Sbjct: 119 -ERFVALRSIIVYCTRREDTTRVAALLR 145
>UNIPROTKB|F1RMJ2 [details] [associations]
symbol:BLM "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR018982 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 GO:GO:0043140 GeneTree:ENSGT00550000074520
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614 EMBL:CT757491
Ensembl:ENSSSCT00000002035 OMA:REMTENT Uniprot:F1RMJ2
Length = 511
Score = 292 (107.8 bits), Expect = 1.9e-23, Sum P(3) = 1.9e-23
Identities = 63/128 (49%), Positives = 84/128 (65%)
Query: 331 VAQELRQRGISADYYHADMDINAREKVHMRW-SKNKLQVIVGTVAFGMGINKPDVRFVIH 389
+A L++ G++A YHA + +AR++V +W +++ QVI T+AFGMGI+KPDVRFVIH
Sbjct: 1 MADTLQKDGLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAFGMGIDKPDVRFVIH 60
Query: 390 HSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFYENSG--------LQNL 441
SL KSVE YYQESGRAGRDG S+CLLF+ DV R ++ E G NL
Sbjct: 61 ASLPKSVEGYYQESGRAGRDGEISQCLLFYTYHDVTRLKRLILMEKDGNHHTKETHFNNL 120
Query: 442 YDIVRYSQ 449
Y +V Y +
Sbjct: 121 YSMVHYCE 128
Score = 48 (22.0 bits), Expect = 1.9e-23, Sum P(3) = 1.9e-23
Identities = 27/126 (21%), Positives = 52/126 (41%)
Query: 555 SSVQKNTA-DNKKSTKRSLTSSALEFELDELRKELASISGGILPHSVLSSQLIRLISARK 613
SSV+K A K S + + L EL E+ K L + G + ++ ++ ++ ++
Sbjct: 290 SSVKKQKALVAKVSQREEMVKKCLG-ELTEVCKSLGKVFG-VHYFNIFNTTTLKKLAESL 347
Query: 614 PSTMEEASSNHLEKIIGKLKTGKYGSRILEVISKCGNSEQQHDNNAVSKEEQGRDARASK 673
S E ++ + K KYG+ ++ ++ K ++N S R S
Sbjct: 348 SSDPEVLLQ--IDGVTED-KLEKYGAEVIPILQKYSEWTVPAEDN--SPRRSPSSCRGSG 402
Query: 674 RTKKEK 679
R E+
Sbjct: 403 RNAPEE 408
Score = 42 (19.8 bits), Expect = 9.9e-23, Sum P(2) = 9.9e-23
Identities = 23/104 (22%), Positives = 45/104 (43%)
Query: 546 GKKIIKLEISSVQKNTADNKKSTKRSLTSSALEFELDELRKELASISGGILPHSVLSSQL 605
G K KL+ K +A ++ + +R L+ LDE + + + + +L +
Sbjct: 214 GSKSAKLQSGIFGKGSAYSRHNAERLFKKLILDKILDE--DLYINANDQPIAYIMLGDKA 271
Query: 606 IRLISAR-KPSTMEEASSNHLEKIIGKLKTGKYGSRILEVISKC 648
+++ K ME +S+ ++K K K R E++ KC
Sbjct: 272 QAVLNGHLKVDFMETENSSSVKK--QKALVAKVSQRE-EMVKKC 312
Score = 38 (18.4 bits), Expect = 1.9e-23, Sum P(3) = 1.9e-23
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 517 SDLKREEIEQLVLQLIIDRVL 537
S R E+L +LI+D++L
Sbjct: 229 SAYSRHNAERLFKKLILDKIL 249
>UNIPROTKB|J3KSL7 [details] [associations]
symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR002464
InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00690 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
EMBL:AC087749 HGNC:HGNC:9950 ChiTaRS:RECQL5 Ensembl:ENST00000580078
Uniprot:J3KSL7
Length = 198
Score = 271 (100.5 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 58/137 (42%), Positives = 81/137 (59%)
Query: 161 LTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDE 220
L S S ++ K + LE+ + + K+LY+TPE ++ S F L LS + +DE
Sbjct: 4 LNSKLSAQERKELLADLEREKPQTKILYITPE-MAASSSFQPTLNSLVSRHLLSYLVVDE 62
Query: 221 AHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVST 280
AHC SQWGHDFRPDY LG L+++ P +ALTATAT +VQ D+ LH++K + T
Sbjct: 63 AHCVSQWGHDFRPDYLRLGALRSRLGHAPCVALTATATPQVQEDVFAALHLKKPVAIFKT 122
Query: 281 -INRPNLFYMVREKSSV 296
R NLFY V+ K +
Sbjct: 123 PCFRANLFYDVQFKELI 139
>UNIPROTKB|E2RDN3 [details] [associations]
symbol:E2RDN3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00098 Pfam:PF00270 PROSITE:PS50158 SMART:SM00343
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074520 GO:GO:0008026
OMA:DMPEEAI EMBL:AAEX03008976 EMBL:AAEX03008977 EMBL:AAEX03008978
Ensembl:ENSCAFT00000002463 Uniprot:E2RDN3
Length = 1163
Score = 276 (102.2 bits), Expect = 3.0e-20, P = 3.0e-20
Identities = 82/261 (31%), Positives = 127/261 (48%)
Query: 84 LNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVL--REG--IALVVSP 139
L G A+R Q++++ VLSG L+++ G GKSLCYQLPA+L R + LV+SP
Sbjct: 486 LEQLGHRAFRPRQEQVVMRVLSGMSTLLVLPTGAGKSLCYQLPALLYARRSPCLTLVISP 545
Query: 140 LLSLIQDQVMCLAAL--GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKS 197
LLSL+ DQV L G+ H + + K+ E + K ++++L ++PE + +
Sbjct: 546 LLSLMDDQVSSLPPCLKGVCIH--SGMSQKQRESALQKV---HAAQVQLLVLSPETLVGA 600
Query: 198 KRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNL-GILKTQFPDVPMMALTAT 256
M ++ IDEAHC SQW H+FRP Y + +L+ + LTAT
Sbjct: 601 GAGMPG--HLPQLPPVAFACIDEAHCISQWSHNFRPCYLRVCKVLREHMGVRCFLGLTAT 658
Query: 257 ATQKVQNDLMEMLHIRKCIKFVSTINRP-NLFYMVREKSSVGKVVIDEIAKYIQESYPNS 315
AT+ D+ L + + + P NL V + ++ + + +
Sbjct: 659 ATRSTARDVARHLGVAEELVLRGPATVPSNLHLSVSRDRDPDQALVTLLQS---DRFRAL 715
Query: 316 ESGIVYCFSRKECEQVAQELR 336
S IVYC R + E+VA LR
Sbjct: 716 SSVIVYCHRRGDTERVAALLR 736
>ASPGD|ASPL0000073665 [details] [associations]
symbol:AN5092 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:BN001303
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514
GO:GO:0008026 EMBL:AACD01000086 InterPro:IPR022698 Pfam:PF12013
RefSeq:XP_662696.1 ProteinModelPortal:Q5B2Y8
EnsemblFungi:CADANIAT00005288 GeneID:2872891 KEGG:ani:AN5092.2
HOGENOM:HOG000217656 OrthoDB:EOG45XC49 Uniprot:Q5B2Y8
Length = 1571
Score = 262 (97.3 bits), Expect = 1.5e-18, P = 1.5e-18
Identities = 107/346 (30%), Positives = 159/346 (45%)
Query: 88 GIPAY--RANQQEIINAVLSGRD-VLVIMAAGGGKSLCYQLPAVLREG-IALVVSPLLSL 143
G PA R Q + A+ G V+ IM G GKS+ + LPA G ++V PLLSL
Sbjct: 910 GRPALQLRGVQAPALKAIQDGASPVVAIMPTGSGKSMLFMLPAYAAPGGCTIMVVPLLSL 969
Query: 144 IQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSK 203
D +M ALGI S S E + E ++ VTPE +++ F +
Sbjct: 970 RADLMMRCQALGI------SCVSWESRR--------PPDEAAIVLVTPES-TENPDFHTF 1014
Query: 204 LEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQ-KVQ 262
L + RL I IDE H DF+P LG L + ++ LTA +
Sbjct: 1015 LNRQRQMRRLDRIVIDECHVILNDQKDFQPAMARLGRLVSA--QTQLVFLTAMLPPIEEA 1072
Query: 263 NDLMEMLHIRKCIKFV-STINRPNLFY-MVREKSSVGK-------VVIDEIAKYIQESYP 313
L + H R + + +R N+ Y MVR G + + +IQ+
Sbjct: 1073 RFLRRIKHQRSEVGIHRARTSRRNVAYRMVRPSLPRGVPRKPHQWLTQPNVRGFIQQRIQ 1132
Query: 314 NSESG--IVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVG 371
+ G IVY + + + ++ EL G A Y+ A +D + V R+ ++ ++I
Sbjct: 1133 QAGDGQVIVYANIKSQVDAISCEL---GCEA-YHSAVLD---QTGVMQRFQSSQTRIIAA 1185
Query: 372 TVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLL 417
T A GMGI+ PD+R VIH +++ Y QESGRAGRDGL S+ ++
Sbjct: 1186 TSALGMGIDIPDIRCVIHLGRPRTLLDYSQESGRAGRDGLASKAVI 1231
>UNIPROTKB|F5H2L2 [details] [associations]
symbol:RECQL "ATP-dependent DNA helicase Q1" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 GO:GO:0008026 EMBL:AC006559
HGNC:HGNC:9948 ChiTaRS:RECQL IPI:IPI01012611
ProteinModelPortal:F5H2L2 SMR:F5H2L2 Ensembl:ENST00000542432
ArrayExpress:F5H2L2 Bgee:F5H2L2 Uniprot:F5H2L2
Length = 131
Score = 214 (80.4 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 46/125 (36%), Positives = 76/125 (60%)
Query: 6 ILQELENVEAEVRLVQEQIKQLVDRQDQLYERQSEL-KSLLEAFEAS-RGSPIQYGGSSS 63
+ +EL+++ +E+ V+ QI++L +RQ +L +++ L K + + E S G+ +Y SS
Sbjct: 7 LTEELDSITSELHAVEIQIQELTERQQELIQKKKVLTKKIKQCLEDSDAGASNEY--DSS 64
Query: 64 TAVENWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCY 123
A N F W + D+ NVF + +R Q E IN ++G++V ++M GGGKSLCY
Sbjct: 65 PAAWN-KEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCY 123
Query: 124 QLPAV 128
QLPA+
Sbjct: 124 QLPAL 128
>POMBASE|SPBCPT2R1.08c [details] [associations]
symbol:tlh2 "RecQ type DNA helicase Tlh1" species:4896
"Schizosaccharomyces pombe" [GO:0000722 "telomere maintenance via
recombination" evidence=IEP] [GO:0000781 "chromosome, telomeric
region" evidence=IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=NAS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=TAS] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 PomBase:SPBCPT2R1.08c
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 EMBL:CU329671
GO:GO:0008270 GenomeReviews:CU329671_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GO:GO:0000781 GO:GO:0000722 HOGENOM:HOG000213224 OrthoDB:EOG4XH37R
EMBL:BX784043 RefSeq:XP_001713158.1 ProteinModelPortal:Q1RKN3
EnsemblFungi:SPBCPT2R1.08c.1 GeneID:5802845 KEGG:spo:SPBCPT2R1.08c
NextBio:20892152 Uniprot:Q1RKN3
Length = 1919
Score = 242 (90.2 bits), Expect = 2.9e-15, Sum P(3) = 2.9e-15
Identities = 89/358 (24%), Positives = 167/358 (46%)
Query: 87 FGIPA-YRANQQ--EIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLRE-----G-----I 133
+G+ A +R+ +Q + ++L+ +++ ++ GGGKSL + +PA++ + G +
Sbjct: 1184 YGLEAKFRSLKQFQSVYFSLLNRMNLITVLPTGGGKSLSFLIPALIEKKRQTPGKVMNMV 1243
Query: 134 ALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEK 193
LV+ P++SL QD ++ + G+ T K+ + LE +L +L
Sbjct: 1244 TLVLVPMMSLRQDMMLRVNEKGLLVCSGNWTAFKD----VRLTLETQLPDLFILTYESAL 1299
Query: 194 ISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMAL 253
+ RF L GRL+ + IDEAH G +R L + P+ L
Sbjct: 1300 TNSGLRFFESLATL---GRLARVVIDEAHLLLTSGA-WRTALSRASRLSGLY--APLHLL 1353
Query: 254 TATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQES-- 311
+AT ++++ + + ++ R N+FY + + + ++D + ++ +
Sbjct: 1354 SATFPRQLEMVARQTFCTNFYVLRETSTARENIFYFLHPYDNT-EFLLD-LRTLMKRTKV 1411
Query: 312 YPNSESGIVYCFSRKECEQVAQELRQRGISAD----YYHADMDINAREKVH--MRWSKNK 365
+ I++C ++K+ E + + L Q + A Y D+ R+ R + K
Sbjct: 1412 FEGDGRAIIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGK 1471
Query: 366 LQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPAD 423
++++ T AFG+GIN VR V+H+ L S Y QE+GRAGRDG + LF+ D
Sbjct: 1472 TRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDGKYAIAALFYEKYD 1529
Score = 51 (23.0 bits), Expect = 2.9e-15, Sum P(3) = 2.9e-15
Identities = 24/80 (30%), Positives = 34/80 (42%)
Query: 4 EEILQELENVEAEVRLVQEQIKQLVDRQDQLYERQSELKSLLEAFEASRGSPIQY--GGS 61
E L LE + VR Q L+ L R S + EA G+ ++ GGS
Sbjct: 455 ERGLCRLEQKDTVVRYAQSAALYLIF----LLRRPSADSGIRRHLEAMCGATVERKEGGS 510
Query: 62 SSTAVENWSGTFEWDSRADD 81
+S++ N S +DS DD
Sbjct: 511 NSSS--NISNVANFDSAEDD 528
Score = 40 (19.1 bits), Expect = 2.9e-15, Sum P(3) = 2.9e-15
Identities = 12/51 (23%), Positives = 25/51 (49%)
Query: 455 NIEKVRLVIFEKLQQVNLFCMVVLAGHAQCIISLLQDIQDNNQRLTMLQLV 505
N+ + +L I + Q + LFC + HA ++ D + ++ ++ LV
Sbjct: 1815 NLRECKLRI--RFQGLCLFCGLTKFEHADSDMAYTSDCRSWARKANLISLV 1863
>POMBASE|SPAC212.11 [details] [associations]
symbol:tlh1 "RecQ type DNA helicase" species:4896
"Schizosaccharomyces pombe" [GO:0000722 "telomere maintenance via
recombination" evidence=IEP] [GO:0000781 "chromosome, telomeric
region" evidence=IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=NAS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=TAS] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR004695 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF03595 PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 PomBase:SPBCPT2R1.08c GO:GO:0016021 GO:GO:0005524
GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0055085 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000781
GO:GO:0000722 eggNOG:COG0514 EMBL:BK005597
ProteinModelPortal:Q5EAK4 TCDB:2.A.16.2.2 HOGENOM:HOG000213224
OrthoDB:EOG4XH37R NextBio:20892297 Uniprot:Q5EAK4
Length = 2100
Score = 242 (90.2 bits), Expect = 4.0e-15, Sum P(3) = 4.0e-15
Identities = 89/358 (24%), Positives = 167/358 (46%)
Query: 87 FGIPA-YRANQQ--EIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLRE-----G-----I 133
+G+ A +R+ +Q + ++L+ +++ ++ GGGKSL + +PA++ + G +
Sbjct: 1365 YGLEAKFRSLKQFQSVYFSLLNRMNLITVLPTGGGKSLSFLIPALIEKKRQTPGKVMNMV 1424
Query: 134 ALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEK 193
LV+ P++SL QD ++ + G+ T K+ + LE +L +L
Sbjct: 1425 TLVLVPMMSLRQDMMLRVNEKGLLVCSGNWTAFKD----VRLTLETQLPDLFILTYESAL 1480
Query: 194 ISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMAL 253
+ RF L GRL+ + IDEAH G +R L + P+ L
Sbjct: 1481 TNSGLRFFESLATL---GRLARVVIDEAHLLLTSGA-WRTALSRASRLSGLY--APLHLL 1534
Query: 254 TATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQES-- 311
+AT ++++ + + ++ R N+FY + + + ++D + ++ +
Sbjct: 1535 SATFPRQLEMVARQTFCTNFYVLRETSTARENIFYFLHPYDNT-EFLLD-LRTLMKRTKV 1592
Query: 312 YPNSESGIVYCFSRKECEQVAQELRQRGISAD----YYHADMDINAREKVH--MRWSKNK 365
+ I++C ++K+ E + + L Q + A Y D+ R+ R + K
Sbjct: 1593 FEGDGRAIIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGK 1652
Query: 366 LQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPAD 423
++++ T AFG+GIN VR V+H+ L S Y QE+GRAGRDG + LF+ D
Sbjct: 1653 TRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDGKYAIAALFYEKYD 1710
Score = 51 (23.0 bits), Expect = 4.0e-15, Sum P(3) = 4.0e-15
Identities = 24/80 (30%), Positives = 34/80 (42%)
Query: 4 EEILQELENVEAEVRLVQEQIKQLVDRQDQLYERQSELKSLLEAFEASRGSPIQY--GGS 61
E L LE + VR Q L+ L R S + EA G+ ++ GGS
Sbjct: 636 ERGLCRLEQKDTVVRYAQSAALYLIF----LLRRPSADSGIRRHLEAMCGATVERKEGGS 691
Query: 62 SSTAVENWSGTFEWDSRADD 81
+S++ N S +DS DD
Sbjct: 692 NSSS--NISNVANFDSAEDD 709
Score = 40 (19.1 bits), Expect = 4.0e-15, Sum P(3) = 4.0e-15
Identities = 12/51 (23%), Positives = 25/51 (49%)
Query: 455 NIEKVRLVIFEKLQQVNLFCMVVLAGHAQCIISLLQDIQDNNQRLTMLQLV 505
N+ + +L I + Q + LFC + HA ++ D + ++ ++ LV
Sbjct: 1996 NLRECKLRI--RFQGLCLFCGLTKFEHADSDMAYTSDCRSWARKANLISLV 2044
>UNIPROTKB|Q47ZX4 [details] [associations]
symbol:CPS_2945 "Putative DEAD/DEAH box helicase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG0514 GO:GO:0008026 RefSeq:YP_269645.1
ProteinModelPortal:Q47ZX4 STRING:Q47ZX4 GeneID:3520230
KEGG:cps:CPS_2945 PATRIC:21468917 OMA:AFGVGMD
ProtClustDB:CLSK938184 BioCyc:CPSY167879:GI48-2994-MONOMER
Uniprot:Q47ZX4
Length = 843
Score = 222 (83.2 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 64/234 (27%), Positives = 113/234 (48%)
Query: 185 KMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQ 244
K+++ +PE ++ S + L + ++ I IDEAH WG +FR +++ G L
Sbjct: 250 KVIFTSPESVTGS--LLPLLFRLAKQNSIANIIIDEAHLIDTWGSNFRSEFQRFGALVAS 307
Query: 245 FPDV---PM--MALTATATQKVQNDLMEML--HIRKCIKFVSTINRPNLFYMVREKSSVG 297
V P + ++AT TQ L + K I RP + + +
Sbjct: 308 LRQVSNSPFKTILMSATFTQSNIGSLTTLYCESDNKPIVVNGNFLRPEISSSYKNEGENN 367
Query: 298 KVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISA-DYYHADMDINAREK 356
+ + + I P I+Y ++ ++ L+ G++ ++ DI +REK
Sbjct: 368 HLQ-SVVGRVIALPKPL----ILYTTLVQDSIDLSCHLKAIGLNRIALFNGKTDIRSREK 422
Query: 357 VHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDG 410
+ +W K+ L +I+ T AFG+G++K +V+ VIH + +++ YYQE GRAGRDG
Sbjct: 423 IIEQWQKDDLDIIIATSAFGVGMDKSNVKSVIHACIPDNIDRYYQEIGRAGRDG 476
>TIGR_CMR|CPS_2945 [details] [associations]
symbol:CPS_2945 "putative DEAD/DEAH box helicase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG0514 GO:GO:0008026 RefSeq:YP_269645.1
ProteinModelPortal:Q47ZX4 STRING:Q47ZX4 GeneID:3520230
KEGG:cps:CPS_2945 PATRIC:21468917 OMA:AFGVGMD
ProtClustDB:CLSK938184 BioCyc:CPSY167879:GI48-2994-MONOMER
Uniprot:Q47ZX4
Length = 843
Score = 222 (83.2 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 64/234 (27%), Positives = 113/234 (48%)
Query: 185 KMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQ 244
K+++ +PE ++ S + L + ++ I IDEAH WG +FR +++ G L
Sbjct: 250 KVIFTSPESVTGS--LLPLLFRLAKQNSIANIIIDEAHLIDTWGSNFRSEFQRFGALVAS 307
Query: 245 FPDV---PM--MALTATATQKVQNDLMEML--HIRKCIKFVSTINRPNLFYMVREKSSVG 297
V P + ++AT TQ L + K I RP + + +
Sbjct: 308 LRQVSNSPFKTILMSATFTQSNIGSLTTLYCESDNKPIVVNGNFLRPEISSSYKNEGENN 367
Query: 298 KVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISA-DYYHADMDINAREK 356
+ + + I P I+Y ++ ++ L+ G++ ++ DI +REK
Sbjct: 368 HLQ-SVVGRVIALPKPL----ILYTTLVQDSIDLSCHLKAIGLNRIALFNGKTDIRSREK 422
Query: 357 VHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDG 410
+ +W K+ L +I+ T AFG+G++K +V+ VIH + +++ YYQE GRAGRDG
Sbjct: 423 IIEQWQKDDLDIIIATSAFGVGMDKSNVKSVIHACIPDNIDRYYQEIGRAGRDG 476
>SGD|S000005056 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase of the DEAD-box
protein family" species:4932 "Saccharomyces cerevisiae" [GO:0071042
"nuclear polyadenylation-dependent mRNA catabolic process"
evidence=IGI;IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0008186 "RNA-dependent
ATPase activity" evidence=IMP;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;IPI] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005056 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0000184 EMBL:BK006947 GO:GO:0003723 EMBL:Z69382
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
OrthoDB:EOG47SWP6 EMBL:X52649 EMBL:Z71388 EMBL:M64991 PIR:S13757
RefSeq:NP_014287.3 RefSeq:NP_014296.4 ProteinModelPortal:P24783
SMR:P24783 DIP:DIP-2438N IntAct:P24783 MINT:MINT-636962
STRING:P24783 PaxDb:P24783 PeptideAtlas:P24783 EnsemblFungi:YNL112W
GeneID:855611 GeneID:855620 KEGG:sce:YNL103W KEGG:sce:YNL112W
CYGD:YNL112w GeneTree:ENSGT00660000095174 NextBio:979789
Genevestigator:P24783 GermOnline:YNL112W Uniprot:P24783
Length = 546
Score = 198 (74.8 bits), Expect = 2.6e-12, P = 2.6e-12
Identities = 86/364 (23%), Positives = 162/364 (44%)
Query: 104 LSGRDVLVIMAAGGGKSLCYQLPAVLR----------EG-IALVVSPLLSL-IQDQVMCL 151
LSGRD++ I A G GK+L Y LP ++ +G I LV++P L +Q Q C
Sbjct: 148 LSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQTEC- 206
Query: 152 AALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPE-KISKSKRFMSKLEKCH-H 209
+ G H +S+ +Y + K + +++ L E I+ R + LE +
Sbjct: 207 SKFG---H-----SSRIRNTCVYGGVPKSQ-QIRDLSRGSEIVIATPGRLIDMLEIGKTN 257
Query: 210 AGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEML 269
R++ + +DEA G F P + I+ PD + +AT ++V+ + L
Sbjct: 258 LKRVTYLVLDEADRMLDMG--FEPQIRK--IVDQIRPDRQTLMWSATWPKEVKQLAADYL 313
Query: 270 H--IRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQE-SYPNSESGIVYCFSRK 326
+ I+ + + N+ +V S K D + KY++ S N +++ +++
Sbjct: 314 NDPIQVQVGSLELSASHNITQIVEVVSDFEKR--DRLNKYLETASQDNEYKTLIFASTKR 371
Query: 327 ECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRF 386
C+ + + LR+ G A H D D R+ V + + ++V T GI+ + +
Sbjct: 372 MCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAARGIDVKGINY 431
Query: 387 VIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFYENSGLQNLY-DIV 445
VI++ + ++E Y GR GR G + FF + + ++ QN+ +++
Sbjct: 432 VINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNKGLGAKLISIMREANQNIPPELL 491
Query: 446 RYSQ 449
+Y +
Sbjct: 492 KYDR 495
>UNIPROTKB|A5A6J2 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9598 "Pan troglodytes" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 HOVERGEN:HBG015893 GO:GO:2001014
CTD:1655 OrthoDB:EOG4BVRTM EMBL:AB222120 RefSeq:NP_001138306.1
UniGene:Ptr.274 ProteinModelPortal:A5A6J2 PRIDE:A5A6J2
GeneID:455267 KEGG:ptr:455267 InParanoid:A5A6J2 NextBio:20836697
Uniprot:A5A6J2
Length = 614
Score = 197 (74.4 bits), Expect = 4.2e-12, P = 4.2e-12
Identities = 91/347 (26%), Positives = 152/347 (43%)
Query: 104 LSGRDVLVIMAAGGGKSLCYQLPAV--------LREG---IALVVSPLLSLIQDQVMCLA 152
LSG D++ + G GK+L Y LPA+ L G I LV++P L Q QV +A
Sbjct: 129 LSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQ-QVQQVA 187
Query: 153 ALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEK-ISKSKRFMSKLEKCHHAG 211
A A L ST IY KG +++ L E I+ R + LE C
Sbjct: 188 AEYCRACRLKSTC-------IYGGAPKGP-QIRDLERGVENCIATPGRLIDFLE-CGKTN 238
Query: 212 --RLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQN---D-L 265
R + + +DEA G F P + I+ PD + +AT ++V+ D L
Sbjct: 239 LRRTTYLVLDEADRMLDMG--FEPQIRK--IVDQIRPDRQTLMWSATWPKEVRQLAEDFL 294
Query: 266 MEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESG-IVYCFS 324
+ +HI I + N+ +V V K +++ + ++E E+ IV+ +
Sbjct: 295 KDYIHIN--IGALELSANHNILQIVDVCHDVEKD--EKLIRLMEEIMSEKENKTIVFVET 350
Query: 325 RKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDV 384
++ C+++ +++R+ G A H D R+ V + K +++ T G++ DV
Sbjct: 351 KRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDV 410
Query: 385 RFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMV 431
+FVI++ S E Y GR R FF P ++ + S ++
Sbjct: 411 KFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLI 457
>ZFIN|ZDB-GENE-050706-53 [details] [associations]
symbol:ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
42" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050706-53 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
EMBL:BX324157 IPI:IPI00774497 Ensembl:ENSDART00000076209
Uniprot:E7F401
Length = 910
Score = 199 (75.1 bits), Expect = 4.8e-12, P = 4.8e-12
Identities = 95/401 (23%), Positives = 172/401 (42%)
Query: 31 QDQLYERQSELKSLL--EAFEASRGSPIQYGGSSSTAVENWSGTFEWDSRA-DDVRLNVF 87
+ Y E+ SL E E R ++ G++ F +D + +R + +
Sbjct: 218 EKNFYNEHEEISSLTGAEVVELRRKLNLKVSGAAPPKPATSFAHFGFDEQLMHQIRKSEY 277
Query: 88 GIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR----------EG-IALV 136
P Q + + LSGRD + I G GK+ + P ++ EG IA++
Sbjct: 278 TQPT--PIQCQGVPIALSGRDAIGIAKTGSGKTAAFIWPILVHIMDQKELEPGEGPIAVI 335
Query: 137 VSPLLSLIQD-QVMCLA---ALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPE 192
V P L Q C A G+ + + S ++ KAL++G +++ TP
Sbjct: 336 VCPTRELCQQIHAECKRFGKAYGLRSVAVYGGGSMWEQA---KALQEGA---EIVVCTPG 389
Query: 193 K-ISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMM 251
+ I K+ + L+ R++ + DEA G + Y+ I PD +
Sbjct: 390 RLIDHVKKKATSLQ------RVTFLVFDEADRMFDMGFE----YQVRSIASHVRPDRQTL 439
Query: 252 ALTATATQKVQNDLMEML--HIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQ 309
+AT +K++ ++L IR + N ++ +V S G+ + + +
Sbjct: 440 LFSATFRKKIEKLARDILVDPIRVVQGDIGEANE-DITQIVEVLQS-GQDKWGWLTRRLV 497
Query: 310 ESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVI 369
E + ++ S +V+ + CE++A L Q G S H DMD + R KV + K L V+
Sbjct: 498 E-FTSAGSVLVFVTKKANCEELATNLIQEGYSLGLLHGDMDQSERNKVIADFKKKNLPVL 556
Query: 370 VGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDG 410
V T G++ P +R V+++ +++ ++T+ GR GR G
Sbjct: 557 VATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAG 597
>CGD|CAL0003204 [details] [associations]
symbol:DBP2 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0003204 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000245
EMBL:AACQ01000246 RefSeq:XP_710694.1 RefSeq:XP_710708.1
ProteinModelPortal:Q59LU0 PRIDE:Q59LU0 GeneID:3647692
GeneID:3647705 KEGG:cal:CaO19.171 KEGG:cal:CaO19.7804 KO:K12823
Uniprot:Q59LU0
Length = 562
Score = 195 (73.7 bits), Expect = 5.9e-12, P = 5.9e-12
Identities = 84/333 (25%), Positives = 147/333 (44%)
Query: 104 LSGRDVLVIMAAGGGKSLCYQLPAVLR----------EG-IALVVSPLLSL-IQDQVMCL 151
LSGRD++ I A G GK+L Y LP+++ +G I LV++P L +Q Q C
Sbjct: 162 LSGRDMIGIAATGSGKTLSYCLPSIVHINAQPQLQYGDGPIVLVLAPTRELAVQIQTEC- 220
Query: 152 AALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEK-ISKSKRFMSKLEKCH-H 209
+ G +S+ +Y KG +++ L E I+ R + LE +
Sbjct: 221 SKFG--------KSSRIRNTCVYGGAPKGP-QIRDLARGVEICIATPGRLIDMLEAGKTN 271
Query: 210 AGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEML 269
R++ + +DEA G F P + I+ PD + +AT ++VQ + L
Sbjct: 272 LKRVTYLVLDEADRMLDMG--FEPQIRK--IVDQIRPDRQTLMWSATWPKEVQQLTRDYL 327
Query: 270 H--IRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGI-VYCFSRK 326
+ I+ I + + +V K D + K+++ + ++ I V+ +++
Sbjct: 328 NDPIQVTIGSLELAASHTITQLVEVIDEFSKR--DRLVKHLESALNEKDNKILVFASTKR 385
Query: 327 ECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRF 386
C+++ LR G A H D + N R+ V + K K ++V T GI+ +
Sbjct: 386 TCDEITTYLRSDGWPALAIHGDKEQNERDWVLDEFRKGKTSIMVATDVAARGIDVKGITH 445
Query: 387 VIHHSLSKSVETYYQESGRAGRDGLPSECLLFF 419
VI++ + ++E Y GR GR G + FF
Sbjct: 446 VINYDMPGNIEDYVHRIGRTGRGGASGTAISFF 478
>FB|FBgn0035720 [details] [associations]
symbol:CG10077 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005875
EMBL:AE014296 GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 UniGene:Dm.7301
GeneID:38756 KEGG:dme:Dmel_CG10077 FlyBase:FBgn0035720
ChiTaRS:CG10077 GenomeRNAi:38756 NextBio:810234 EMBL:AY102660
RefSeq:NP_648062.2 SMR:Q8MZI3 IntAct:Q8MZI3 MINT:MINT-863686
STRING:Q8MZI3 EnsemblMetazoa:FBtr0076940 EnsemblMetazoa:FBtr0333083
UCSC:CG10077-RA InParanoid:Q8MZI3 OMA:WRACAIH Uniprot:Q8MZI3
Length = 818
Score = 197 (74.4 bits), Expect = 6.7e-12, P = 6.7e-12
Identities = 93/402 (23%), Positives = 172/402 (42%)
Query: 46 EAFEASRGSPIQYGGSSSTAVENWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLS 105
E F S I+ + ++E G F D +++R F P A Q + +S
Sbjct: 137 ETFLTSNEITIKGDQVPTPSIEFEEGGFP-DYVMNEIRKQGFAKPT--AIQAQGWPIAMS 193
Query: 106 GRDVLVIMAAGGGKSLCYQLPAV--------LREG---IALVVSPLLSLIQDQVMCLAAL 154
GRD++ + G GK+L Y LPAV L G IALV++P L Q
Sbjct: 194 GRDLVGVAQTGSGKTLAYVLPAVVHINNQPRLERGDGPIALVLAPTRELAQQIQQVAIEF 253
Query: 155 GIPAHMLTSTTSKEDEKFIY-KALEKGEGELKMLYVTPEK-ISKSKRFMSKLEKCHHAGR 212
G H+ + K + LE+G ++++ TP + I +R + L++C +
Sbjct: 254 GSNTHVRNTCIFGGAPKGQQARDLERG---VEIVIATPGRLIDFLERGTTSLKRCTY--- 307
Query: 213 LSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEML--H 270
+ +DEA G F P + I++ PD ++ +AT ++V+ E L +
Sbjct: 308 ---LVLDEADRMLDMG--FEPQIRK--IMQQIRPDRQVLMWSATWPKEVRQLAEEFLNNY 360
Query: 271 IRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQE-SYPNSESGIVYCFSRKECE 329
I+ I +S N+ +V K++ ++ K + + S N I++ ++K +
Sbjct: 361 IQVNIGSLSLSANHNILQIVDVCDENEKLM--KLIKLLTDISAENETKTIIFVETKKRVD 418
Query: 330 QVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIH 389
++ + + ++G A H D R+ V + + ++V T G++ DV+FVI+
Sbjct: 419 EITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSILVATDVAARGLDVDDVKFVIN 478
Query: 390 HSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMV 431
+ + E Y GR GR F ++ + + ++
Sbjct: 479 YDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNANKANDLI 520
>GENEDB_PFALCIPARUM|PF14_0655 [details] [associations]
symbol:PF14_0655 "RNA helicase-1, putative"
species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003743 "translation initiation factor activity"
evidence=ISS] [GO:0000339 "RNA cap binding" evidence=ISS]
[GO:0006446 "regulation of translational initiation" evidence=ISS]
[GO:0016281 "eukaryotic translation initiation factor 4F complex"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006446
GO:GO:0003676 EMBL:AE014187 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GenomeReviews:AE014187_GR KO:K03257 OMA:TENDARQ
RefSeq:XP_001348829.1 ProteinModelPortal:Q8IKF0 SMR:Q8IKF0
IntAct:Q8IKF0 MINT:MINT-1575859 EnsemblProtists:PF14_0655:mRNA
GeneID:812237 KEGG:pfa:PF14_0655 EuPathDB:PlasmoDB:PF3D7_1468700
ProtClustDB:PTZ00424 Uniprot:Q8IKF0
Length = 398
Score = 192 (72.6 bits), Expect = 7.6e-12, Sum P(2) = 7.6e-12
Identities = 81/334 (24%), Positives = 143/334 (42%)
Query: 87 FGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCY---QLPAVLREGIA---LVVSPL 140
+G A QQ I +L+G D + +G GK+ + L + + +A L+++P
Sbjct: 41 YGFEKPSAIQQRGIKPILNGYDTIGQAQSGTGKTATFVISSLQLINYDYVACQALILAPT 100
Query: 141 LSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRF 200
L Q + ALG ++ + + + ++K + + M+ TP ++
Sbjct: 101 RELAQQIQKVVLALG--DYLKVKCHACVGGTVVREDIDKLKQGVHMVVGTPGRV------ 152
Query: 201 MSKLEKCH-HAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQ 259
++K H RL L +DEA F+ + K PD+ + +AT Q
Sbjct: 153 YDMIDKRHLGVDRLKLFILDEAD--EMLSRGFKAQIYE--VFKKLVPDIQVALFSATMPQ 208
Query: 260 KVQNDLMEMLHIRKCI---KFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSE 316
++ + K I K T+ FY+ EK K +D + + E+ ++
Sbjct: 209 EILELTTRFMRDPKTILVKKDELTLEGIRQFYVAVEKEE-WK--LDTLCD-LYETLTITQ 264
Query: 317 SGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFG 376
S I+YC +RK+ + + QE+ R + H DMD R+ + + +V+V T
Sbjct: 265 S-IIYCNTRKKVDILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRVLVTTDLLA 323
Query: 377 MGINKPDVRFVIHHSLSKSVETYYQESGRAGRDG 410
GI+ V VI++ L S +TY GR+GR G
Sbjct: 324 RGIDVQQVSLVINYDLPASPDTYIHRIGRSGRFG 357
Score = 42 (19.8 bits), Expect = 7.6e-12, Sum P(2) = 7.6e-12
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 506 DKMKIKLKEIDSDLKREEIEQLVLQL 531
DK K KLK+I+S + IE++ L++
Sbjct: 370 DKEKDKLKKIESYYSTQ-IEEMPLEV 394
>UNIPROTKB|Q8IKF0 [details] [associations]
symbol:H45 "Helicase 45" species:36329 "Plasmodium
falciparum 3D7" [GO:0006446 "regulation of translational
initiation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006446
GO:GO:0003676 EMBL:AE014187 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GenomeReviews:AE014187_GR KO:K03257 OMA:TENDARQ
RefSeq:XP_001348829.1 ProteinModelPortal:Q8IKF0 SMR:Q8IKF0
IntAct:Q8IKF0 MINT:MINT-1575859 EnsemblProtists:PF14_0655:mRNA
GeneID:812237 KEGG:pfa:PF14_0655 EuPathDB:PlasmoDB:PF3D7_1468700
ProtClustDB:PTZ00424 Uniprot:Q8IKF0
Length = 398
Score = 192 (72.6 bits), Expect = 7.6e-12, Sum P(2) = 7.6e-12
Identities = 81/334 (24%), Positives = 143/334 (42%)
Query: 87 FGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCY---QLPAVLREGIA---LVVSPL 140
+G A QQ I +L+G D + +G GK+ + L + + +A L+++P
Sbjct: 41 YGFEKPSAIQQRGIKPILNGYDTIGQAQSGTGKTATFVISSLQLINYDYVACQALILAPT 100
Query: 141 LSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRF 200
L Q + ALG ++ + + + ++K + + M+ TP ++
Sbjct: 101 RELAQQIQKVVLALG--DYLKVKCHACVGGTVVREDIDKLKQGVHMVVGTPGRV------ 152
Query: 201 MSKLEKCH-HAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQ 259
++K H RL L +DEA F+ + K PD+ + +AT Q
Sbjct: 153 YDMIDKRHLGVDRLKLFILDEAD--EMLSRGFKAQIYE--VFKKLVPDIQVALFSATMPQ 208
Query: 260 KVQNDLMEMLHIRKCI---KFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSE 316
++ + K I K T+ FY+ EK K +D + + E+ ++
Sbjct: 209 EILELTTRFMRDPKTILVKKDELTLEGIRQFYVAVEKEE-WK--LDTLCD-LYETLTITQ 264
Query: 317 SGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFG 376
S I+YC +RK+ + + QE+ R + H DMD R+ + + +V+V T
Sbjct: 265 S-IIYCNTRKKVDILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRVLVTTDLLA 323
Query: 377 MGINKPDVRFVIHHSLSKSVETYYQESGRAGRDG 410
GI+ V VI++ L S +TY GR+GR G
Sbjct: 324 RGIDVQQVSLVINYDLPASPDTYIHRIGRSGRFG 357
Score = 42 (19.8 bits), Expect = 7.6e-12, Sum P(2) = 7.6e-12
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 506 DKMKIKLKEIDSDLKREEIEQLVLQL 531
DK K KLK+I+S + IE++ L++
Sbjct: 370 DKEKDKLKKIESYYSTQ-IEEMPLEV 394
>FB|FBgn0029979 [details] [associations]
symbol:CG10777 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:AY060404
RefSeq:NP_572424.1 UniGene:Dm.101 SMR:Q9W3M7 DIP:DIP-18838N
MINT:MINT-850836 EnsemblMetazoa:FBtr0071132 GeneID:31707
KEGG:dme:Dmel_CG10777 UCSC:CG10777-RB FlyBase:FBgn0029979
InParanoid:Q9W3M7 OMA:FLENRNT OrthoDB:EOG4B8GV9 GenomeRNAi:31707
NextBio:774939 Uniprot:Q9W3M7
Length = 945
Score = 197 (74.4 bits), Expect = 8.3e-12, P = 8.3e-12
Identities = 94/369 (25%), Positives = 164/369 (44%)
Query: 104 LSGRDVLVIMAAGGGKSLCYQLPAVLR----------EG-IALVVSPLLSL---IQDQVM 149
LSGRD++ I G GK+L Y LPA++ EG IALV++P L IQ V
Sbjct: 272 LSGRDLVGIAQTGSGKTLAYMLPAIVHIGNQPPIIRGEGPIALVLAPTRELAQQIQSVVR 331
Query: 150 CLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEK-ISKSKRFMSKLEKCH 208
L P T + + L++G ++++ TP + I + + L++C
Sbjct: 332 DYGHLCKPEIRHTCIFGGSSKVPQARDLDRG---VEVIIATPGRLIDFLENRNTNLQRCT 388
Query: 209 HAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEM 268
+ L+ +DEA G F P + I++ PD ++ +AT ++VQ +
Sbjct: 389 Y-----LV-LDEADRMLDMG--FEPQIRK--IIEQIRPDRQVVMWSATWPKEVQALAGDF 438
Query: 269 L--HIRKCIKFVSTINRPNLFYMVREKSSVGK-----VVIDEIAKYIQESYPNSESGIVY 321
L +I+ I ++ N+ +V + + K +++EI+ I+ S N IV+
Sbjct: 439 LNDYIQINIGSMNLSANHNIRQIVEICTEIEKPQRLVCLLNEISP-IKNSGNNGNKIIVF 497
Query: 322 CFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINK 381
++ + E + Q +R G +A H D N R+ V + K +++ T G++
Sbjct: 498 VETKIKVEDILQIIRAEGYNATSIHGDKTQNERDSVLKDFRNGKSNILIATDVASRGLDV 557
Query: 382 PDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMV-FYENSGL-- 438
D+++VI++ S E Y GR GR FF P + + ++ E +G
Sbjct: 558 EDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFTPDNAKQARELISVLEEAGQTP 617
Query: 439 -QNLYDIVR 446
Q L D+ R
Sbjct: 618 SQALLDLAR 626
>UNIPROTKB|F1MBQ8 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072332 "intrinsic apoptotic signaling pathway by p53
class mediator" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0060765 "regulation of androgen
receptor signaling pathway" evidence=IEA] [GO:0050681 "androgen
receptor binding" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IEA] [GO:0036002
"pre-mRNA binding" evidence=IEA] [GO:0033148 "positive regulation
of intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0030331 "estrogen receptor binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0000122 GO:GO:0003713 GO:GO:0033148 GO:GO:0043517
GO:GO:0060765 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
KO:K12823 OMA:IDAMSGY GeneTree:ENSGT00660000095174 CTD:1655
EMBL:DAAA02049347 IPI:IPI01002739 RefSeq:NP_001178324.1
UniGene:Bt.64934 ProteinModelPortal:F1MBQ8 SMR:F1MBQ8 PRIDE:F1MBQ8
Ensembl:ENSBTAT00000024514 GeneID:533700 KEGG:bta:533700
NextBio:20876124 ArrayExpress:F1MBQ8 Uniprot:F1MBQ8
Length = 614
Score = 194 (73.4 bits), Expect = 9.0e-12, P = 9.0e-12
Identities = 91/347 (26%), Positives = 152/347 (43%)
Query: 104 LSGRDVLVIMAAGGGKSLCYQLPAV--------LREG---IALVVSPLLSLIQDQVMCLA 152
LSG D++ + G GK+L Y LPA+ L G I LV++P L Q QV +A
Sbjct: 129 LSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQ-QVQQVA 187
Query: 153 ALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEK-ISKSKRFMSKLEKCHHAG 211
A A L ST IY KG +++ L E I+ R + LE C
Sbjct: 188 AEYCRACRLKSTC-------IYGGAPKGP-QIRDLERGVEICIATPGRLIDFLE-CGKTN 238
Query: 212 --RLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQN---D-L 265
R + + +DEA G F P + I+ PD + +AT ++V+ D L
Sbjct: 239 LRRTTYLVLDEADRMLDMG--FEPQIRK--IVDQIRPDRQTLMWSATWPKEVRQLAEDFL 294
Query: 266 MEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESG-IVYCFS 324
+ +HI I + N+ +V V K +++ + ++E E+ IV+ +
Sbjct: 295 KDYIHIN--IGALELSANHNILQIVDVCHDVEKD--EKLIRLMEEIMSEKENKTIVFVET 350
Query: 325 RKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDV 384
++ C+++ +++R+ G A H D R+ V + K +++ T G++ DV
Sbjct: 351 KRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDV 410
Query: 385 RFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMV 431
+FVI++ S E Y GR R FF P ++ + S ++
Sbjct: 411 KFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLI 457
>UNIPROTKB|J3KTA4 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HGNC:HGNC:2746 ChiTaRS:DDX5 ProteinModelPortal:J3KTA4
Ensembl:ENST00000578804 Uniprot:J3KTA4
Length = 614
Score = 194 (73.4 bits), Expect = 9.0e-12, P = 9.0e-12
Identities = 91/347 (26%), Positives = 152/347 (43%)
Query: 104 LSGRDVLVIMAAGGGKSLCYQLPAV--------LREG---IALVVSPLLSLIQDQVMCLA 152
LSG D++ + G GK+L Y LPA+ L G I LV++P L Q QV +A
Sbjct: 129 LSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQ-QVQQVA 187
Query: 153 ALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEK-ISKSKRFMSKLEKCHHAG 211
A A L ST IY KG +++ L E I+ R + LE C
Sbjct: 188 AEYCRACRLKSTC-------IYGGAPKGP-QIRDLERGVEICIATPGRLIDFLE-CGKTN 238
Query: 212 --RLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQN---D-L 265
R + + +DEA G F P + I+ PD + +AT ++V+ D L
Sbjct: 239 LRRTTYLVLDEADRMLDMG--FEPQIRK--IVDQIRPDRQTLMWSATWPKEVRQLAEDFL 294
Query: 266 MEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESG-IVYCFS 324
+ +HI I + N+ +V V K +++ + ++E E+ IV+ +
Sbjct: 295 KDYIHIN--IGALELSANHNILQIVDVCHDVEKD--EKLIRLMEEIMSEKENKTIVFVET 350
Query: 325 RKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDV 384
++ C+++ +++R+ G A H D R+ V + K +++ T G++ DV
Sbjct: 351 KRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDV 410
Query: 385 RFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMV 431
+FVI++ S E Y GR R FF P ++ + S ++
Sbjct: 411 KFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLI 457
>UNIPROTKB|P17844 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0005516 "calmodulin binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0019899 "enzyme binding"
evidence=IEA] [GO:0045069 "regulation of viral genome replication"
evidence=IEA] [GO:0048306 "calcium-dependent protein binding"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IMP;NAS]
[GO:0016049 "cell growth" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA;NAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IMP] [GO:0072332
"intrinsic apoptotic signaling pathway by p53 class mediator"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA] [GO:2001014
"regulation of skeletal muscle cell differentiation" evidence=ISS]
[GO:0045667 "regulation of osteoblast differentiation"
evidence=ISS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0050681
"androgen receptor binding" evidence=IDA] [GO:0060765 "regulation
of androgen receptor signaling pathway" evidence=IMP] [GO:0033148
"positive regulation of intracellular estrogen receptor signaling
pathway" evidence=IDA] [GO:0003713 "transcription coactivator
activity" evidence=IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0030331 "estrogen receptor binding" evidence=IDA] [GO:0036002
"pre-mRNA binding" evidence=IDA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0016049 GO:GO:0001701 GO:GO:0045944
GO:GO:0006351 GO:GO:0000122 GO:GO:0003713 EMBL:CH471109
GO:GO:0033148 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0045069 GO:GO:0004004 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY HOVERGEN:HBG015893
GO:GO:2001014 EMBL:X52104 EMBL:AF015812 EMBL:BT006943 EMBL:AB451257
EMBL:BC016027 EMBL:X15729 EMBL:AJ010931 IPI:IPI00017617 PIR:JC1087
RefSeq:NP_004387.1 UniGene:Hs.279806 PDB:3FE2 PDB:4A4D PDBsum:3FE2
PDBsum:4A4D ProteinModelPortal:P17844 SMR:P17844 DIP:DIP-29844N
IntAct:P17844 MINT:MINT-5000516 STRING:P17844 PhosphoSite:P17844
DMDM:129383 SWISS-2DPAGE:P17844 PaxDb:P17844 PeptideAtlas:P17844
PRIDE:P17844 DNASU:1655 Ensembl:ENST00000225792
Ensembl:ENST00000574715 GeneID:1655 KEGG:hsa:1655 UCSC:uc002jej.2
CTD:1655 GeneCards:GC17M062494 HGNC:HGNC:2746 HPA:CAB005868
HPA:HPA020043 MIM:180630 neXtProt:NX_P17844 PharmGKB:PA27228
InParanoid:P17844 OrthoDB:EOG4BVRTM PhylomeDB:P17844 ChiTaRS:DDX5
EvolutionaryTrace:P17844 GenomeRNAi:1655 NextBio:6816
ArrayExpress:P17844 Bgee:P17844 CleanEx:HS_DDX5
Genevestigator:P17844 GermOnline:ENSG00000108654 Uniprot:P17844
Length = 614
Score = 194 (73.4 bits), Expect = 9.0e-12, P = 9.0e-12
Identities = 91/347 (26%), Positives = 152/347 (43%)
Query: 104 LSGRDVLVIMAAGGGKSLCYQLPAV--------LREG---IALVVSPLLSLIQDQVMCLA 152
LSG D++ + G GK+L Y LPA+ L G I LV++P L Q QV +A
Sbjct: 129 LSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQ-QVQQVA 187
Query: 153 ALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEK-ISKSKRFMSKLEKCHHAG 211
A A L ST IY KG +++ L E I+ R + LE C
Sbjct: 188 AEYCRACRLKSTC-------IYGGAPKGP-QIRDLERGVEICIATPGRLIDFLE-CGKTN 238
Query: 212 --RLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQN---D-L 265
R + + +DEA G F P + I+ PD + +AT ++V+ D L
Sbjct: 239 LRRTTYLVLDEADRMLDMG--FEPQIRK--IVDQIRPDRQTLMWSATWPKEVRQLAEDFL 294
Query: 266 MEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESG-IVYCFS 324
+ +HI I + N+ +V V K +++ + ++E E+ IV+ +
Sbjct: 295 KDYIHIN--IGALELSANHNILQIVDVCHDVEKD--EKLIRLMEEIMSEKENKTIVFVET 350
Query: 325 RKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDV 384
++ C+++ +++R+ G A H D R+ V + K +++ T G++ DV
Sbjct: 351 KRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDV 410
Query: 385 RFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMV 431
+FVI++ S E Y GR R FF P ++ + S ++
Sbjct: 411 KFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLI 457
>UNIPROTKB|Q5R4I9 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9601 "Pongo abelii" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 KO:K12823 HOVERGEN:HBG015893
GO:GO:2001014 HSSP:P10081 CTD:1655 EMBL:CR861259
RefSeq:NP_001126958.1 UniGene:Pab.18500 ProteinModelPortal:Q5R4I9
PRIDE:Q5R4I9 GeneID:100173977 KEGG:pon:100173977 InParanoid:Q5R4I9
Uniprot:Q5R4I9
Length = 614
Score = 194 (73.4 bits), Expect = 9.0e-12, P = 9.0e-12
Identities = 91/347 (26%), Positives = 152/347 (43%)
Query: 104 LSGRDVLVIMAAGGGKSLCYQLPAV--------LREG---IALVVSPLLSLIQDQVMCLA 152
LSG D++ + G GK+L Y LPA+ L G I LV++P L Q QV +A
Sbjct: 129 LSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQ-QVQQVA 187
Query: 153 ALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEK-ISKSKRFMSKLEKCHHAG 211
A A L ST IY KG +++ L E I+ R + LE C
Sbjct: 188 AEYCRACRLKSTC-------IYGGAPKGP-QIRDLERGVEICIATPGRLIDFLE-CGKTN 238
Query: 212 --RLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQN---D-L 265
R + + +DEA G F P + I+ PD + +AT ++V+ D L
Sbjct: 239 LRRTTYLVLDEADRMLDMG--FEPQIRK--IVDQIRPDRQTLMWSATWPKEVRQLAEDFL 294
Query: 266 MEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESG-IVYCFS 324
+ +HI I + N+ +V V K +++ + ++E E+ IV+ +
Sbjct: 295 KDYIHIN--IGALELSANHNILQIVDVCHDVEKD--EKLIRLMEEIMSEKENKTIVFVET 350
Query: 325 RKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDV 384
++ C+++ +++R+ G A H D R+ V + K +++ T G++ DV
Sbjct: 351 KRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDV 410
Query: 385 RFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMV 431
+FVI++ S E Y GR R FF P ++ + S ++
Sbjct: 411 KFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLI 457
>MGI|MGI:105037 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 5"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=ISO] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IDA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=IMP]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0030331 "estrogen
receptor binding" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=ISO]
[GO:0036002 "pre-mRNA binding" evidence=ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISO] [GO:0045069 "regulation of viral genome
replication" evidence=ISO] [GO:0045667 "regulation of osteoblast
differentiation" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0060765 "regulation of androgen receptor signaling pathway"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:0072332 "intrinsic apoptotic signaling pathway by
p53 class mediator" evidence=ISO] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:105037
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0007623
GO:GO:0001701 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0030529 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
EMBL:AL603664 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014 OrthoDB:EOG4BVRTM
ChiTaRS:DDX5 EMBL:X65627 IPI:IPI00420363 PIR:I48385
UniGene:Mm.220038 ProteinModelPortal:Q61656 SMR:Q61656
DIP:DIP-32293N IntAct:Q61656 STRING:Q61656 PhosphoSite:Q61656
PaxDb:Q61656 PRIDE:Q61656 InParanoid:Q61656 CleanEx:MM_DDX5
Genevestigator:Q61656 GermOnline:ENSMUSG00000020719 Uniprot:Q61656
Length = 614
Score = 194 (73.4 bits), Expect = 9.0e-12, P = 9.0e-12
Identities = 91/347 (26%), Positives = 152/347 (43%)
Query: 104 LSGRDVLVIMAAGGGKSLCYQLPAV--------LREG---IALVVSPLLSLIQDQVMCLA 152
LSG D++ + G GK+L Y LPA+ L G I LV++P L Q QV +A
Sbjct: 129 LSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQ-QVQQVA 187
Query: 153 ALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEK-ISKSKRFMSKLEKCHHAG 211
A A L ST IY KG +++ L E I+ R + LE C
Sbjct: 188 AEYCRACRLKSTC-------IYGGAPKGP-QIRDLERGVEICIATPGRLIDFLE-CGKTN 238
Query: 212 --RLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQN---D-L 265
R + + +DEA G F P + I+ PD + +AT ++V+ D L
Sbjct: 239 LRRTTYLVLDEADRMLDMG--FEPQIRK--IVDQIRPDRQTLMWSATWPKEVRQLAEDFL 294
Query: 266 MEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESG-IVYCFS 324
+ +HI I + N+ +V V K +++ + ++E E+ IV+ +
Sbjct: 295 KDYIHIN--IGALELSANHNILQIVDVCHDVEKD--EKLIRLMEEIMSEKENKTIVFVET 350
Query: 325 RKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDV 384
++ C+++ +++R+ G A H D R+ V + K +++ T G++ DV
Sbjct: 351 KRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDV 410
Query: 385 RFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMV 431
+FVI++ S E Y GR R FF P ++ + S ++
Sbjct: 411 KFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLI 457
>RGD|619906 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box helicase 5" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003712 "transcription cofactor
activity" evidence=ISO] [GO:0003713 "transcription coactivator
activity" evidence=IEA;ISO] [GO:0003724 "RNA helicase activity"
evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0007623 "circadian
rhythm" evidence=IEA;ISO] [GO:0019899 "enzyme binding"
evidence=IDA] [GO:0030331 "estrogen receptor binding"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=IEA;ISO] [GO:0036002
"pre-mRNA binding" evidence=IEA;ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA;ISO] [GO:0045069 "regulation of viral genome
replication" evidence=IMP] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=IDA] [GO:0050681 "androgen receptor binding"
evidence=IEA;ISO] [GO:0060765 "regulation of androgen receptor
signaling pathway" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA;ISO] [GO:0072332 "intrinsic apoptotic
signaling pathway by p53 class mediator" evidence=IEA;ISO]
[GO:2001014 "regulation of skeletal muscle cell differentiation"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:619906 GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0019899 GO:GO:0000122 GO:GO:0003713 GO:GO:0005516
GO:GO:0048306 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
EMBL:CH473948 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045069 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 CTD:1655
EMBL:BC079036 IPI:IPI00464718 RefSeq:NP_001007614.1
UniGene:Rn.162208 IntAct:Q6AYI1 STRING:Q6AYI1
Ensembl:ENSRNOT00000048490 GeneID:287765 KEGG:rno:287765
UCSC:RGD:619906 InParanoid:Q6AYI1 NextBio:626970
Genevestigator:Q6AYI1 Uniprot:Q6AYI1
Length = 615
Score = 194 (73.4 bits), Expect = 9.0e-12, P = 9.0e-12
Identities = 91/347 (26%), Positives = 152/347 (43%)
Query: 104 LSGRDVLVIMAAGGGKSLCYQLPAV--------LREG---IALVVSPLLSLIQDQVMCLA 152
LSG D++ + G GK+L Y LPA+ L G I LV++P L Q QV +A
Sbjct: 129 LSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQ-QVQQVA 187
Query: 153 ALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEK-ISKSKRFMSKLEKCHHAG 211
A A L ST IY KG +++ L E I+ R + LE C
Sbjct: 188 AEYCRACRLKSTC-------IYGGAPKGP-QIRDLERGVEICIATPGRLIDFLE-CGKTN 238
Query: 212 --RLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQN---D-L 265
R + + +DEA G F P + I+ PD + +AT ++V+ D L
Sbjct: 239 LRRTTYLVLDEADRMLDMG--FEPQIRK--IVDQIRPDRQTLMWSATWPKEVRQLAEDFL 294
Query: 266 MEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESG-IVYCFS 324
+ +HI I + N+ +V V K +++ + ++E E+ IV+ +
Sbjct: 295 KDYIHIN--IGALELSANHNILQIVDVCHDVEKD--EKLIRLMEEIMSEKENKTIVFVET 350
Query: 325 RKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDV 384
++ C+++ +++R+ G A H D R+ V + K +++ T G++ DV
Sbjct: 351 KRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDV 410
Query: 385 RFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMV 431
+FVI++ S E Y GR R FF P ++ + S ++
Sbjct: 411 KFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLI 457
>UNIPROTKB|F1PEA6 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] [GO:0003712 "transcription cofactor
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AAEX03006361
Ensembl:ENSCAFT00000018595 Uniprot:F1PEA6
Length = 671
Score = 194 (73.4 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 91/347 (26%), Positives = 152/347 (43%)
Query: 104 LSGRDVLVIMAAGGGKSLCYQLPAV--------LREG---IALVVSPLLSLIQDQVMCLA 152
LSG D++ + G GK+L Y LPA+ L G I LV++P L Q QV +A
Sbjct: 186 LSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQ-QVQQVA 244
Query: 153 ALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEK-ISKSKRFMSKLEKCHHAG 211
A A L ST IY KG +++ L E I+ R + LE C
Sbjct: 245 AEYCRACRLKSTC-------IYGGAPKGP-QIRDLERGVEICIATPGRLIDFLE-CGKTN 295
Query: 212 --RLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQN---D-L 265
R + + +DEA G F P + I+ PD + +AT ++V+ D L
Sbjct: 296 LRRTTYLVLDEADRMLDMG--FEPQIRK--IVDQIRPDRQTLMWSATWPKEVRQLAEDFL 351
Query: 266 MEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESG-IVYCFS 324
+ +HI I + N+ +V V K +++ + ++E E+ IV+ +
Sbjct: 352 KDYIHIN--IGALELSANHNILQIVDVCHDVEKD--EKLIRLMEEIMSEKENKTIVFVET 407
Query: 325 RKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDV 384
++ C+++ +++R+ G A H D R+ V + K +++ T G++ DV
Sbjct: 408 KRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDV 467
Query: 385 RFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMV 431
+FVI++ S E Y GR R FF P ++ + S ++
Sbjct: 468 KFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLI 514
>UNIPROTKB|F1NM08 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 GO:GO:0003712 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:AADN02030017 IPI:IPI00680367 Ensembl:ENSGALT00000005586
ArrayExpress:F1NM08 Uniprot:F1NM08
Length = 595
Score = 192 (72.6 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 91/346 (26%), Positives = 151/346 (43%)
Query: 104 LSGRDVLVIMAAGGGKSLCYQLPAV--------LREG---IALVVSPLLSLIQDQVMCLA 152
LSG D++ + G GK+L Y LPA+ L G I LV++P L Q QV +A
Sbjct: 117 LSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQ-QVQQVA 175
Query: 153 ALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEK-ISKSKRFMSKLEKCH-HA 210
A A L ST IY KG +++ L E I+ R + LE +
Sbjct: 176 AEYSRACRLKSTC-------IYGGAPKGP-QIRDLERGVEICIATPGRLIDFLEAGKTNL 227
Query: 211 GRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQN---D-LM 266
R + + +DEA G F P + I+ PD + +AT ++V+ D L
Sbjct: 228 RRCTYLVLDEADRMLDMG--FEPQIRK--IVDQIRPDRQTLMWSATWPKEVRQLAEDFLK 283
Query: 267 EMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESG-IVYCFSR 325
E +HI I + N+ +V V K D++ + ++E E+ IV+ ++
Sbjct: 284 EYVHIN--IGALELSANHNILQIVDVCHDVEKD--DKLIRLMEEIMSEKENKTIVFVETK 339
Query: 326 KECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVR 385
+ C+ + +++R+ G A H D R+ V + K +++ T G++ DV+
Sbjct: 340 RRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVK 399
Query: 386 FVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMV 431
FVI++ S E Y GR R FF P ++ + + ++
Sbjct: 400 FVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVNDLI 445
>UNIPROTKB|F1NXI3 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0003713 "transcription coactivator
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0007623 "circadian rhythm" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0036002 "pre-mRNA binding" evidence=IEA] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0050681 "androgen receptor binding" evidence=IEA] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0045944 GO:GO:0000122
GO:GO:0003713 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AADN02030017 IPI:IPI00598253
ProteinModelPortal:F1NXI3 Ensembl:ENSGALT00000034644
ArrayExpress:F1NXI3 Uniprot:F1NXI3
Length = 603
Score = 192 (72.6 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 91/346 (26%), Positives = 151/346 (43%)
Query: 104 LSGRDVLVIMAAGGGKSLCYQLPAV--------LREG---IALVVSPLLSLIQDQVMCLA 152
LSG D++ + G GK+L Y LPA+ L G I LV++P L Q QV +A
Sbjct: 125 LSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQ-QVQQVA 183
Query: 153 ALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEK-ISKSKRFMSKLEKCH-HA 210
A A L ST IY KG +++ L E I+ R + LE +
Sbjct: 184 AEYSRACRLKSTC-------IYGGAPKGP-QIRDLERGVEICIATPGRLIDFLEAGKTNL 235
Query: 211 GRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQN---D-LM 266
R + + +DEA G F P + I+ PD + +AT ++V+ D L
Sbjct: 236 RRCTYLVLDEADRMLDMG--FEPQIRK--IVDQIRPDRQTLMWSATWPKEVRQLAEDFLK 291
Query: 267 EMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESG-IVYCFSR 325
E +HI I + N+ +V V K D++ + ++E E+ IV+ ++
Sbjct: 292 EYVHIN--IGALELSANHNILQIVDVCHDVEKD--DKLIRLMEEIMSEKENKTIVFVETK 347
Query: 326 KECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVR 385
+ C+ + +++R+ G A H D R+ V + K +++ T G++ DV+
Sbjct: 348 RRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVK 407
Query: 386 FVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMV 431
FVI++ S E Y GR R FF P ++ + + ++
Sbjct: 408 FVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVNDLI 453
>UNIPROTKB|Q4R6M5 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9541 "Macaca fascicularis" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014
HSSP:P10081 EMBL:AB169157 ProteinModelPortal:Q4R6M5 PRIDE:Q4R6M5
Uniprot:Q4R6M5
Length = 614
Score = 190 (71.9 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 91/347 (26%), Positives = 151/347 (43%)
Query: 104 LSGRDVLVIMAAGGGKSLCYQLPAV--------LREG---IALVVSPLLSLIQDQVMCLA 152
LSG D++ + G GK+L Y LPA+ L G I LV++P L Q QV +A
Sbjct: 129 LSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQ-QVQQVA 187
Query: 153 ALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEK-ISKSKRFMSKLEKCHHAG 211
A A L ST IY KG +++ L E I+ R + LE C
Sbjct: 188 AEYCRACRLKSTC-------IYGGAPKGP-QIRDLERGVEICIATPGRLIDFLE-CGKTN 238
Query: 212 --RLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQN---D-L 265
R + + +DEA G F P + I+ PD + +AT ++V+ D L
Sbjct: 239 LRRTTYLVLDEADRMLDMG--FEPQIRK--IVDQIRPDRQTLMWSATWPKEVRQLAEDFL 294
Query: 266 MEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESG-IVYCFS 324
+ +HI I + N+ +V V K +++ + ++E E+ IV+ +
Sbjct: 295 KDYIHIN--IGALELSANHNILQIVDVCHDVEKD--EKLIRLMEEIMSEKENKTIVFVET 350
Query: 325 RKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDV 384
++ C+++ +++R+ G A H D R V + K +++ T G++ DV
Sbjct: 351 KRRCDELTRKMRRDGWPAMGIHGDKSQQERGWVLNEFKHGKAPILIATDVASRGLDVEDV 410
Query: 385 RFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMV 431
+FVI++ S E Y GR R FF P ++ + S ++
Sbjct: 411 KFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLI 457
>GENEDB_PFALCIPARUM|PFD1070w [details] [associations]
symbol:PFD1070w "eukaryotic initiation factor,
putative" species:5833 "Plasmodium falciparum" [GO:0016281
"eukaryotic translation initiation factor 4F complex" evidence=ISS]
[GO:0003743 "translation initiation factor activity" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0006446 "regulation of translational initiation" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006446 GO:GO:0016281
GO:GO:0003743 EMBL:AL844503 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025
OMA:EDWKFDT RefSeq:XP_001351530.1 ProteinModelPortal:Q8IFN9
SMR:Q8IFN9 EnsemblProtists:PFD1070w:mRNA GeneID:812458
KEGG:pfa:PFD1070w EuPathDB:PlasmoDB:PF3D7_0422700
ProtClustDB:CLSZ2436055 Uniprot:Q8IFN9
Length = 390
Score = 185 (70.2 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 83/349 (23%), Positives = 162/349 (46%)
Query: 87 FGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAV------LREGIALVVSPL 140
+G A QQ I +L+GRDV++ +G GK+ + + A+ L E +++SP
Sbjct: 35 YGFEKPSAIQQRGIKPILNGRDVILQSQSGTGKTCVFAVGALNCVNRNLNETQVIILSPT 94
Query: 141 LSLI-QDQVMCLAALG-IPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSK 198
L Q Q +CLA I + K+ I KAL G + ++ TP +I
Sbjct: 95 RELAEQTQKVCLALADYIHVTIYCCIGGKKMSDDI-KALNNG---VHVISGTPGRIYHML 150
Query: 199 RFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATAT 258
+ L KC + +L IDEA G F+ + I + P+ ++ +AT
Sbjct: 151 N-LRHL-KCKYIKQLV---IDEADEMLNKG--FKEQVYD--IYRFLSPNTQIILSSATLP 201
Query: 259 QKVQNDLMEMLH--IRKCIKFVS-TINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNS 315
Q+V + +H ++ +K T+ F++ EK + ++ Y ES +
Sbjct: 202 QEVLEITNKFMHKPVKILVKRDELTLEGIKQFFVSIEKEQWKYETLADL--Y--ESLTIT 257
Query: 316 ESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAF 375
++ +V+C ++ + + + +++ + + HA M + R+ + +++ + K +V++ T +
Sbjct: 258 QA-VVFCNTQMKVDWLTKKMLESNFTVCKMHAGMSQSERDDIMLKFRQCKFRVLISTDIW 316
Query: 376 GMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADV 424
G G++ +V V+++ L S E+Y GR+GR G + F + D+
Sbjct: 317 GRGLDVQEVSLVVNYDLPNSRESYIHRIGRSGRFGRKGVAINFVKNDDI 365
>UNIPROTKB|Q8IFN9 [details] [associations]
symbol:PFD1070w "Eukaryotic initiation factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006446
"regulation of translational initiation" evidence=ISS] [GO:0016281
"eukaryotic translation initiation factor 4F complex" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006446 GO:GO:0016281
GO:GO:0003743 EMBL:AL844503 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025
OMA:EDWKFDT RefSeq:XP_001351530.1 ProteinModelPortal:Q8IFN9
SMR:Q8IFN9 EnsemblProtists:PFD1070w:mRNA GeneID:812458
KEGG:pfa:PFD1070w EuPathDB:PlasmoDB:PF3D7_0422700
ProtClustDB:CLSZ2436055 Uniprot:Q8IFN9
Length = 390
Score = 185 (70.2 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 83/349 (23%), Positives = 162/349 (46%)
Query: 87 FGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAV------LREGIALVVSPL 140
+G A QQ I +L+GRDV++ +G GK+ + + A+ L E +++SP
Sbjct: 35 YGFEKPSAIQQRGIKPILNGRDVILQSQSGTGKTCVFAVGALNCVNRNLNETQVIILSPT 94
Query: 141 LSLI-QDQVMCLAALG-IPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSK 198
L Q Q +CLA I + K+ I KAL G + ++ TP +I
Sbjct: 95 RELAEQTQKVCLALADYIHVTIYCCIGGKKMSDDI-KALNNG---VHVISGTPGRIYHML 150
Query: 199 RFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATAT 258
+ L KC + +L IDEA G F+ + I + P+ ++ +AT
Sbjct: 151 N-LRHL-KCKYIKQLV---IDEADEMLNKG--FKEQVYD--IYRFLSPNTQIILSSATLP 201
Query: 259 QKVQNDLMEMLH--IRKCIKFVS-TINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNS 315
Q+V + +H ++ +K T+ F++ EK + ++ Y ES +
Sbjct: 202 QEVLEITNKFMHKPVKILVKRDELTLEGIKQFFVSIEKEQWKYETLADL--Y--ESLTIT 257
Query: 316 ESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAF 375
++ +V+C ++ + + + +++ + + HA M + R+ + +++ + K +V++ T +
Sbjct: 258 QA-VVFCNTQMKVDWLTKKMLESNFTVCKMHAGMSQSERDDIMLKFRQCKFRVLISTDIW 316
Query: 376 GMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADV 424
G G++ +V V+++ L S E+Y GR+GR G + F + D+
Sbjct: 317 GRGLDVQEVSLVVNYDLPNSRESYIHRIGRSGRFGRKGVAINFVKNDDI 365
>UNIPROTKB|J3KRM6 [details] [associations]
symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 Pfam:PF00271
PROSITE:PS51194 GO:GO:0005524 GO:GO:0003676 GO:GO:0004386
EMBL:AC087749 HGNC:HGNC:9950 ChiTaRS:RECQL5 Ensembl:ENST00000582464
Uniprot:J3KRM6
Length = 118
Score = 164 (62.8 bits), Expect = 4.2e-11, P = 4.2e-11
Identities = 33/65 (50%), Positives = 46/65 (70%)
Query: 375 FGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFYE 434
FGMG++K +VRFV H +++KS+ YYQESGRAGRDG PS C L++ D + S ++ E
Sbjct: 2 FGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDRDQVSFLIRKE 61
Query: 435 NSGLQ 439
+ LQ
Sbjct: 62 VAKLQ 66
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 185 (70.2 bits), Expect = 4.2e-11, P = 4.2e-11
Identities = 78/323 (24%), Positives = 138/323 (42%)
Query: 96 QQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR-----EGIALVVSPLLSLIQDQVMC 150
Q+E I +L G +++ G GK+ Y LP + R + L+V+P L
Sbjct: 29 QKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQRIQRGKKAQVLIVTPTRELALQVADE 88
Query: 151 LAALG--IPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCH 208
+A LG + L + E+ I + L +G ++++ TP +I + + K
Sbjct: 89 VAKLGKYLKVRALAVYGGQAIERQI-RGLRQG---VEVIVGTPGRILDH---IGR--KTF 139
Query: 209 HAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEM 268
A + ++ +DEA G F D + IL T + +AT ++ + +
Sbjct: 140 PAAEIKIVILDEADEMLDMG--FIDDIE--AILNTLTNRQQTLLFSATLPAPIKTIIKKF 195
Query: 269 LHIRKCIKFVSTINR-PNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKE 327
L K +K V P + + E K I+ + + P IV+C ++K
Sbjct: 196 LGGYKTVKLVGREKTVPAIRQVYYELPETEK--IEGLVSILNSELPIQ--AIVFCRTKKR 251
Query: 328 CEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFV 387
++V ++L RG +A H DM R + + K +++V T G++ PDV V
Sbjct: 252 VDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVATDVAARGLDIPDVSHV 311
Query: 388 IHHSLSKSVETYYQESGRAGRDG 410
I+ + ++ E+Y GR GR G
Sbjct: 312 INFDIPQNPESYIHRIGRTGRAG 334
>TIGR_CMR|CHY_0229 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 185 (70.2 bits), Expect = 4.2e-11, P = 4.2e-11
Identities = 78/323 (24%), Positives = 138/323 (42%)
Query: 96 QQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR-----EGIALVVSPLLSLIQDQVMC 150
Q+E I +L G +++ G GK+ Y LP + R + L+V+P L
Sbjct: 29 QKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQRIQRGKKAQVLIVTPTRELALQVADE 88
Query: 151 LAALG--IPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCH 208
+A LG + L + E+ I + L +G ++++ TP +I + + K
Sbjct: 89 VAKLGKYLKVRALAVYGGQAIERQI-RGLRQG---VEVIVGTPGRILDH---IGR--KTF 139
Query: 209 HAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEM 268
A + ++ +DEA G F D + IL T + +AT ++ + +
Sbjct: 140 PAAEIKIVILDEADEMLDMG--FIDDIE--AILNTLTNRQQTLLFSATLPAPIKTIIKKF 195
Query: 269 LHIRKCIKFVSTINR-PNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKE 327
L K +K V P + + E K I+ + + P IV+C ++K
Sbjct: 196 LGGYKTVKLVGREKTVPAIRQVYYELPETEK--IEGLVSILNSELPIQ--AIVFCRTKKR 251
Query: 328 CEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFV 387
++V ++L RG +A H DM R + + K +++V T G++ PDV V
Sbjct: 252 VDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVATDVAARGLDIPDVSHV 311
Query: 388 IHHSLSKSVETYYQESGRAGRDG 410
I+ + ++ E+Y GR GR G
Sbjct: 312 INFDIPQNPESYIHRIGRTGRAG 334
>UNIPROTKB|A4QSS5 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase DBP2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 EMBL:CM001233 GO:GO:0003723
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG47SWP6 RefSeq:XP_003712846.1
ProteinModelPortal:A4QSS5 EnsemblFungi:MGG_16901T0 GeneID:12985738
KEGG:mgr:MGG_16901 Uniprot:A4QSS5
Length = 548
Score = 187 (70.9 bits), Expect = 4.3e-11, P = 4.3e-11
Identities = 86/351 (24%), Positives = 156/351 (44%)
Query: 80 DDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSP 139
D+V+ G PA A Q + LSGRDV+ I G GK+L Y LPA++ +++P
Sbjct: 138 DEVKAQ--GFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAP 195
Query: 140 ---LLSLIQDQVMCLAALGIPAHMLT-STTSKEDEKFIYKALEKGEGELKMLYVTPEK-I 194
+ LI LA + I A + +S+ +Y + KG +++ L E I
Sbjct: 196 GDGPIVLILAPTRELA-VQIQAEISKFGKSSRIRNTCVYGGVPKGP-QIRDLSRGVEVCI 253
Query: 195 SKSKRFMSKLEKCH-HAGRLSLISIDEAHCCSQWGHDFRPDYKNL-GILKTQFPDVPMMA 252
+ R + LE + R++ + +DEA G F P + + G ++ PD +
Sbjct: 254 ATPGRLIDMLESGKTNLRRVTYLVLDEADRMLDMG--FEPQIRKIIGQIR---PDRQTLM 308
Query: 253 LTATATQKVQN---D-LMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYI 308
+AT ++V+N D L + + + +S +R V +S +I + K +
Sbjct: 309 WSATWPKEVRNMAADFLQDFIQVNIGSLDLSANHRITQIVEVVSESEKRDRMIRHMEK-V 367
Query: 309 QESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQV 368
+ + +++ +++ +++ + LRQ G A H D N R+ V ++ K +
Sbjct: 368 MDGKDSKNKILIFVGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSPI 427
Query: 369 IVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFF 419
+V T GI+ ++ V+++ + E Y GR GR G + FF
Sbjct: 428 MVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFF 478
>TAIR|locus:2035741 [details] [associations]
symbol:RH20 "RNA helicase 20" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AC073944 EMBL:AY062745 EMBL:AY128786 EMBL:AJ010470
IPI:IPI00528901 PIR:B96593 PIR:T51345 RefSeq:NP_175911.1
UniGene:At.20425 ProteinModelPortal:Q9C718 SMR:Q9C718 PaxDb:Q9C718
PRIDE:Q9C718 ProMEX:Q9C718 EnsemblPlants:AT1G55150.1 GeneID:841958
KEGG:ath:AT1G55150 GeneFarm:937 TAIR:At1g55150 InParanoid:Q9C718
OMA:CANHNIL PhylomeDB:Q9C718 ProtClustDB:CLSN2682455
Genevestigator:Q9C718 GermOnline:AT1G55150 Uniprot:Q9C718
Length = 501
Score = 183 (69.5 bits), Expect = 9.8e-11, P = 9.8e-11
Identities = 78/330 (23%), Positives = 144/330 (43%)
Query: 104 LSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMCLAA----LGIPAH 159
+ GRD++ I G GK+L Y LPA++ P+L+ ++ + A L +
Sbjct: 134 MKGRDLIGIAETGSGKTLSYLLPAIVHVN----AQPMLAHGDGPIVLVLAPTRELAVQIQ 189
Query: 160 MLTS---TTSKEDEKFIYKALEKGEGELKMLYVTPE-KISKSKRFMSKLEKCH-HAGRLS 214
S ++SK IY + KG +++ L E I+ R + +E + + R++
Sbjct: 190 QEASKFGSSSKIKTTCIYGGVPKGP-QVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVT 248
Query: 215 LISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIR-K 273
+ +DEA G D P + I+ PD + +AT ++V+ + L+ K
Sbjct: 249 YLVLDEADRMLDMGFD--PQIRK--IVSHIRPDRQTLYWSATWPKEVEQLSKKFLYNPYK 304
Query: 274 CIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQ 333
I S + + + S + +++ K +++ S +V+ ++K C+Q+ +
Sbjct: 305 VIIGSSDLKANRAIRQIVDVISESQKY-NKLVKLLEDIMDGSRI-LVFLDTKKGCDQITR 362
Query: 334 ELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLS 393
+LR G A H D R+ V + K ++ T G++ DV++VI++
Sbjct: 363 QLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFP 422
Query: 394 KSVETYYQESGRAGRDGLPSECLLFFRPAD 423
S+E Y GR GR G FF A+
Sbjct: 423 GSLEDYVHRIGRTGRAGAKGTAYTFFTVAN 452
>ASPGD|ASPL0000006660 [details] [associations]
symbol:AN5931 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 EMBL:BN001301
EMBL:AACD01000101 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_663535.1
ProteinModelPortal:Q5B0J9 STRING:Q5B0J9 PRIDE:Q5B0J9
EnsemblFungi:CADANIAT00007099 GeneID:2870997 KEGG:ani:AN5931.2
OMA:IDAMSGY OrthoDB:EOG47SWP6 Uniprot:Q5B0J9
Length = 563
Score = 182 (69.1 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 88/358 (24%), Positives = 154/358 (43%)
Query: 104 LSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSP---LLSLIQDQVMCLAALGIPAHM 160
LSGRDV+ I G GK+L Y LPA++ +++P + LI LA + I A +
Sbjct: 175 LSGRDVVGIAETGSGKTLSYCLPAIVHINAQPLLAPGDGPIVLILAPTRELA-VQIQAEI 233
Query: 161 LT-STTSKEDEKFIYKALEKGEGELKMLYVTPEK-ISKSKRFMSKLEKCH-HAGRLSLIS 217
+S+ +Y + KG +++ L E I+ R + LE + R++ +
Sbjct: 234 SKFGKSSRIRNTCVYGGVPKGP-QIRDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLV 292
Query: 218 IDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEML--HIRKCI 275
+DEA G F P + I+ PD +AT ++V+ + L +I+ I
Sbjct: 293 LDEADRMLDMG--FEPQIRK--IISQIRPDRQTCMWSATWPKEVRQLASDFLNNYIQVNI 348
Query: 276 KFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPN-SESGIVYCFSRKECEQVAQE 334
+ + +V S K D + K++++ N +V+ +++ +++ +
Sbjct: 349 GSMDLSANHRITQIVEVISEFEKR--DRMIKHLEKIMENRGNKCLVFTGTKRIADEITRF 406
Query: 335 LRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSK 394
LRQ G A H D R+ V + K ++V T GI+ D+ VI++
Sbjct: 407 LRQDGWPALSIHGDKQQQERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVINYDYPN 466
Query: 395 SVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFYENSGLQN----LYDIVRYS 448
+ E Y GR GR G + FF + + +V + Q L ++VRYS
Sbjct: 467 NSEDYVHRIGRTGRAGAKGTAITFFTTDNAKQARDLVTILSEAKQQIDPRLAEMVRYS 524
>TAIR|locus:2162022 [details] [associations]
symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
Length = 591
Score = 179 (68.1 bits), Expect = 3.6e-10, P = 3.6e-10
Identities = 82/336 (24%), Positives = 141/336 (41%)
Query: 104 LSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTS 163
L GRD++ I G GK+L Y LPA++ VS L QD + L P L
Sbjct: 200 LKGRDLIGIAETGSGKTLAYLLPALVH------VSAQPRLGQDDGPIVLILA-PTRELAV 252
Query: 164 TTSKEDEKF----------IYKALEKGEGELKMLYVTPE-KISKSKRFMSKLEKCHHAG- 211
+E KF IY KG +++ L E I+ R + LE C H
Sbjct: 253 QIQEESRKFGLRSGVRSTCIYGGAPKGP-QIRDLRRGVEIVIATPGRLIDMLE-CQHTNL 310
Query: 212 -RLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLH 270
R++ + +DEA G F P + I+ PD + +AT ++V+ + L
Sbjct: 311 KRVTYLVLDEADRMLDMG--FEPQIRK--IVSQIRPDRQTLLWSATWPREVETLARQFL- 365
Query: 271 IRKCIKFVSTINRPNLFYMVREKSSVGKVV--IDEIAKY-----IQESYPNSESGIVYCF 323
R K + I +L + S+ +V+ + KY + + + +++
Sbjct: 366 -RDPYKAI--IGSTDL----KANQSINQVIEIVPTPEKYNRLLTLLKQLMDGSKILIFVE 418
Query: 324 SRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPD 383
+++ C+QV ++LR G A H D + R++V + + ++ T G++ D
Sbjct: 419 TKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLDVKD 478
Query: 384 VRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFF 419
++ V+++ ++E Y GR GR G FF
Sbjct: 479 IKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFF 514
>ZFIN|ZDB-GENE-030131-925 [details] [associations]
symbol:ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
5" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-925 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:BX085195 IPI:IPI00488168 Ensembl:ENSDART00000055492
ArrayExpress:F1Q5L6 Bgee:F1Q5L6 Uniprot:F1Q5L6
Length = 617
Score = 179 (68.1 bits), Expect = 3.9e-10, P = 3.9e-10
Identities = 85/344 (24%), Positives = 151/344 (43%)
Query: 104 LSGRDVLVIMAAGGGKSLCYQLPAV--------LREG---IALVVSPLLSLIQDQVMCLA 152
LSG+D++ I G GK+L Y LPA+ L G I LV++P L Q QV +A
Sbjct: 131 LSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLEHGDGPICLVLAPTRELAQ-QVQQVA 189
Query: 153 ALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEK-ISKSKRFMSKLEKCH-HA 210
A A + ST IY KG +++ L E I+ R + LE +
Sbjct: 190 AEYGKASRIKSTC-------IYGGAPKGP-QIRDLERGVEICIATPGRLIDFLEAGKTNL 241
Query: 211 GRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEML- 269
R + + +DEA G F P + I+ PD + +AT ++V+ + L
Sbjct: 242 RRCTYLVLDEADRMLDMG--FEPQIRK--IVDQIRPDRQTLMWSATWPKEVRQLAEDFLK 297
Query: 270 -HIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESG-IVYCFSRKE 327
+I+ + + N+ +V + + G+ D++ + ++E E+ I++ +++
Sbjct: 298 EYIQINVGALQLSANHNILQIV-DVCNDGEKE-DKLIRLLEEIMSEKENKTIIFVETKRR 355
Query: 328 CEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFV 387
C+ + + +R+ G A H D + R+ V + K +++ T G++ DV+FV
Sbjct: 356 CDDLTRRMRRDGWPAMGIHGDKNQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFV 415
Query: 388 IHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMV 431
I+ + E Y GR R FF P ++ + +V
Sbjct: 416 INFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQAHDLV 459
>RGD|1304909 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1304909
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0003676 EMBL:CH473948 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
CTD:11325 KO:K12835 OrthoDB:EOG47WNN9 GeneTree:ENSGT00610000086076
IPI:IPI00361283 RefSeq:NP_001100529.1 UniGene:Rn.154550
Ensembl:ENSRNOT00000013046 GeneID:303607 KEGG:rno:303607
UCSC:RGD:1304909 NextBio:651732 Uniprot:D4A031
Length = 929
Score = 180 (68.4 bits), Expect = 5.6e-10, P = 5.6e-10
Identities = 79/338 (23%), Positives = 145/338 (42%)
Query: 100 INAVLSGRDVLVIMAAGGGKSLCYQLPAVLR----------EG-IALVVSPLLSLIQD-Q 147
+ LSGRD++ I G GK+ + P ++ +G IA++V P L Q
Sbjct: 284 VPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIH 343
Query: 148 VMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKC 207
C G A+ L S +A EG +++ TP ++ + +K
Sbjct: 344 AEC-KRFG-KAYNLRSVAVYGGGSMWEQAKALQEGA-EIVVCTPGRLIDHVK-----KKA 395
Query: 208 HHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLME 267
+ R+S + DEA G + Y+ I PD + +AT +K++ +
Sbjct: 396 TNLQRVSYLVFDEADRMFDMGFE----YQVRSIASHVRPDRQTLLFSATFRKKIEKLARD 451
Query: 268 ML--HIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSR 325
+L IR + N ++ +V S G + + + + E + +S S +++ +
Sbjct: 452 ILIDPIRVVQGDIGEANE-DVTQIVEILHS-GPSKWNWLTRRLVE-FTSSGSVLLFVTKK 508
Query: 326 KECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVR 385
E++A L+Q G + H DMD + R KV + + K + V+V T G++ P ++
Sbjct: 509 ANAEELANNLKQEGHNLGLLHGDMDQSERNKVILDFKKKDIPVLVATDVAARGLDIPSIK 568
Query: 386 FVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPAD 423
VI++ +++ ++T+ GR GR G P D
Sbjct: 569 TVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606
>DICTYBASE|DDB_G0293064 [details] [associations]
symbol:DDB_G0293064 species:44689 "Dictyostelium
discoideum" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0293064 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AAFI02000199
RefSeq:XP_629301.1 ProteinModelPortal:Q54CB8
EnsemblProtists:DDB0191757 GeneID:8629024 KEGG:ddi:DDB_G0293064
InParanoid:Q54CB8 OMA:VLYWSAT Uniprot:Q54CB8
Length = 573
Score = 176 (67.0 bits), Expect = 7.3e-10, P = 7.3e-10
Identities = 76/325 (23%), Positives = 139/325 (42%)
Query: 104 LSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTS 163
LSG D+L I G GK+L + LPA+ E I + P S + + A P L +
Sbjct: 174 LSGSDMLGISKTGSGKTLSFILPAI--EHI--LAQPRQSYYPGPSVLVVA---PTRELAN 226
Query: 164 TTSKEDEKF----------IYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGR- 212
++E E++ IY + +L++ + R + +E + +
Sbjct: 227 QINQEAEQYLRLVNIEIATIYGGAPRRSQQLQLSRRPKIVVGTPGRIIDFMESGDLSLKN 286
Query: 213 LSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIR 272
+S + +DEA + G + + D GI + PD ++ +AT +KV + E HIR
Sbjct: 287 ISFLVVDEADRLMEMGFEQQID----GIFNSIRPDRQVLYWSATWPKKVSS-FAEK-HIR 340
Query: 273 KCIKFVSTINRPNLFYMVREKSSVGKV---VIDEIAKYIQESYPNSESG--IVYCFSRKE 327
I+ ++ + +K + +D + + E Y E +++ ++K
Sbjct: 341 TPIRLQIGSSQLTANKNISQKFKIVPTDADKVDALMDTLGEIYSADEKAQTLIFTMTKKG 400
Query: 328 CEQVAQELRQRG--ISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVR 385
+ + ++ G + D H D+D N RE++ + +L ++V T G++ +
Sbjct: 401 ADTLKHYIQSNGDNVRIDTLHGDVDQNRRERIVQDFKNKRLDIVVATDVASRGLDIKGIS 460
Query: 386 FVIHHSLSKSVETYYQESGRAGRDG 410
VI+ SL ETY GR GR G
Sbjct: 461 HVINFSLPSDCETYVHRIGRTGRAG 485
>TAIR|locus:2084178 [details] [associations]
symbol:DRH1 "DEAD box RNA helicase 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001202 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00397
PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194
SMART:SM00456 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000184 GO:GO:0003723
EMBL:AC009325 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AB010259 EMBL:AY062591 EMBL:AF428313 EMBL:AY050375
EMBL:BT000795 EMBL:BT009670 IPI:IPI00544638 IPI:IPI00545196
PIR:T52137 RefSeq:NP_001030619.1 RefSeq:NP_566141.1
RefSeq:NP_850492.1 RefSeq:NP_974206.1 UniGene:At.22096
ProteinModelPortal:Q8H136 SMR:Q8H136 IntAct:Q8H136 STRING:Q8H136
PaxDb:Q8H136 PRIDE:Q8H136 EnsemblPlants:AT3G01540.2
EnsemblPlants:AT3G01540.3 EnsemblPlants:AT3G01540.4 GeneID:821116
KEGG:ath:AT3G01540 GeneFarm:931 TAIR:At3g01540 InParanoid:Q8H136
OMA:DPSTEAY PhylomeDB:Q8H136 ProtClustDB:CLSN2687967
Genevestigator:Q8H136 GermOnline:AT3G01540 Uniprot:Q8H136
Length = 619
Score = 176 (67.0 bits), Expect = 8.3e-10, P = 8.3e-10
Identities = 85/350 (24%), Positives = 152/350 (43%)
Query: 104 LSGRDVLVIMAAGGGKSLCYQLPAVL---------REG-IALVVSP---LLSLIQDQVMC 150
+ GRD++ I G GK+L Y +P L R G LV+SP L + IQ++ +
Sbjct: 193 MQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVK 252
Query: 151 LAALG-IPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHH 209
I L K + + LE+G ++ TP +++ M ++
Sbjct: 253 FGRSSRISCTCLYGGAPKGPQ---LRDLERGAD---IVVATPGRLNDILE-MRRIS---- 301
Query: 210 AGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMAL-TATATQKVQNDLMEM 268
++S + +DEA G F P + I+K + P + TAT + V+ ++
Sbjct: 302 LRQISYLVLDEADRMLDMG--FEPQIRK--IVK-EIPTKRQTLMYTATWPKGVRKIAADL 356
Query: 269 LHIRKCIKFVSTINRPNLFYMVREKSSVGKV-VIDEIAKY--IQESYPNSESG---IVYC 322
L + + +N N+ +V KS + V+ + K +++ + E G I++C
Sbjct: 357 L-VNP-----AQVNIGNVDELVANKSITQHIEVVAPMEKQRRLEQILRSQEPGSKVIIFC 410
Query: 323 FSRKECEQVAQEL-RQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINK 381
+++ C+Q+ + L RQ G +A H D R+ V ++ + V+V T G++
Sbjct: 411 STKRMCDQLTRNLTRQFGAAA--IHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDV 468
Query: 382 PDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMV 431
D+R V+++ VE Y GR GR G + FF D S ++
Sbjct: 469 KDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDLI 518
>MGI|MGI:1919297 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919297
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0016607 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AL604045 HSSP:P09052
CTD:11325 HOGENOM:HOG000268793 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 OMA:QGVNNTA ChiTaRS:DDX42 EMBL:AK007805
EMBL:AK049311 EMBL:AK169816 EMBL:AK171730 EMBL:BC043036
IPI:IPI00329839 IPI:IPI00830514 RefSeq:NP_082350.3 UniGene:Mm.41367
ProteinModelPortal:Q810A7 SMR:Q810A7 IntAct:Q810A7 STRING:Q810A7
PhosphoSite:Q810A7 PaxDb:Q810A7 PRIDE:Q810A7
Ensembl:ENSMUST00000021046 GeneID:72047 KEGG:mmu:72047
UCSC:uc007lyk.2 UCSC:uc007lyl.2 GeneTree:ENSGT00610000086076
InParanoid:Q810A7 NextBio:335308 Bgee:Q810A7 CleanEx:MM_DDX42
Genevestigator:Q810A7 Uniprot:Q810A7
Length = 929
Score = 177 (67.4 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 79/338 (23%), Positives = 144/338 (42%)
Query: 100 INAVLSGRDVLVIMAAGGGKSLCYQLPAVLR----------EG-IALVVSPLLSLIQD-Q 147
+ LSGRD++ I G GK+ + P ++ +G IA++V P L Q
Sbjct: 284 VPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIH 343
Query: 148 VMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKC 207
C G A+ L S +A EG +++ TP ++ + +K
Sbjct: 344 AEC-KRFG-KAYNLRSVAVYGGGSMWEQAKALQEGA-EIVVCTPGRLIDHVK-----KKA 395
Query: 208 HHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLME 267
+ R+S + DEA G + Y+ I PD + +AT +K++ +
Sbjct: 396 TNLQRVSYLVFDEADRMFDMGFE----YQVRSIASHVRPDRQTLLFSATFRKKIEKLARD 451
Query: 268 ML--HIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSR 325
+L IR + N ++ +V S G + + + + E + +S S +++ +
Sbjct: 452 ILIDPIRVVQGDIGEANE-DVTQIVEILHS-GPSKWNWLTRRLVE-FTSSGSVLLFVTKK 508
Query: 326 KECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVR 385
E++A L+Q G + H DMD + R KV + K + V+V T G++ P ++
Sbjct: 509 ANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIK 568
Query: 386 FVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPAD 423
VI++ +++ ++T+ GR GR G P D
Sbjct: 569 TVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606
>UNIPROTKB|E2RFF1 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AAEX03006359
Ensembl:ENSCAFT00000020366 Uniprot:E2RFF1
Length = 933
Score = 177 (67.4 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 79/338 (23%), Positives = 144/338 (42%)
Query: 100 INAVLSGRDVLVIMAAGGGKSLCYQLPAVLR----------EG-IALVVSPLLSLIQD-Q 147
+ LSGRD++ I G GK+ + P ++ +G IA++V P L Q
Sbjct: 284 VPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIH 343
Query: 148 VMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKC 207
C G A+ L S +A EG +++ TP ++ + +K
Sbjct: 344 AEC-KRFG-KAYNLRSVAVYGGGSMWEQAKALQEGA-EIVVCTPGRLIDHVK-----KKA 395
Query: 208 HHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLME 267
+ R+S + DEA G + Y+ I PD + +AT +K++ +
Sbjct: 396 TNLQRVSYLVFDEADRMFDMGFE----YQVRSIASHVRPDRQTLLFSATFRKKIEKLARD 451
Query: 268 ML--HIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSR 325
+L IR + N ++ +V S G + + + + E + +S S +++ +
Sbjct: 452 ILIDPIRVVQGDIGEANE-DVTQIVEILHS-GPSKWNWLTRRLVE-FTSSGSVLLFVTKK 508
Query: 326 KECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVR 385
E++A L+Q G + H DMD + R KV + K + V+V T G++ P ++
Sbjct: 509 ANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIK 568
Query: 386 FVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPAD 423
VI++ +++ ++T+ GR GR G P D
Sbjct: 569 TVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606
>UNIPROTKB|Q86XP3 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008104 "protein
localization" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AF083255 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
EMBL:CH471109 GO:GO:0015030 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 CTD:11325 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 EMBL:AB036090 EMBL:AK292908 EMBL:AC015651
EMBL:BC008208 EMBL:BC015505 EMBL:BC078667 EMBL:BC093081
EMBL:AL050096 EMBL:BK000566 IPI:IPI00409671 IPI:IPI00829889
PIR:T08745 RefSeq:NP_031398.2 RefSeq:NP_987095.1 UniGene:Hs.702010
ProteinModelPortal:Q86XP3 SMR:Q86XP3 IntAct:Q86XP3
MINT:MINT-1427725 STRING:Q86XP3 PhosphoSite:Q86XP3 DMDM:74750541
PaxDb:Q86XP3 PRIDE:Q86XP3 Ensembl:ENST00000359353
Ensembl:ENST00000389924 Ensembl:ENST00000457800
Ensembl:ENST00000578681 Ensembl:ENST00000583590 GeneID:11325
KEGG:hsa:11325 UCSC:uc002jbu.3 GeneCards:GC17P061851
HGNC:HGNC:18676 HPA:HPA023447 HPA:HPA023571 HPA:HPA025941
MIM:613369 neXtProt:NX_Q86XP3 PharmGKB:PA134875761
InParanoid:Q86XP3 OMA:QGVNNTA ChiTaRS:DDX42 GenomeRNAi:11325
NextBio:43019 ArrayExpress:Q86XP3 Bgee:Q86XP3 CleanEx:HS_DDX42
Genevestigator:Q86XP3 Uniprot:Q86XP3
Length = 938
Score = 177 (67.4 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 79/338 (23%), Positives = 144/338 (42%)
Query: 100 INAVLSGRDVLVIMAAGGGKSLCYQLPAVLR----------EG-IALVVSPLLSLIQD-Q 147
+ LSGRD++ I G GK+ + P ++ +G IA++V P L Q
Sbjct: 284 VPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIH 343
Query: 148 VMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKC 207
C G A+ L S +A EG +++ TP ++ + +K
Sbjct: 344 AEC-KRFG-KAYNLRSVAVYGGGSMWEQAKALQEGA-EIVVCTPGRLIDHVK-----KKA 395
Query: 208 HHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLME 267
+ R+S + DEA G + Y+ I PD + +AT +K++ +
Sbjct: 396 TNLQRVSYLVFDEADRMFDMGFE----YQVRSIASHVRPDRQTLLFSATFRKKIEKLARD 451
Query: 268 ML--HIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSR 325
+L IR + N ++ +V S G + + + + E + +S S +++ +
Sbjct: 452 ILIDPIRVVQGDIGEANE-DVTQIVEILHS-GPSKWNWLTRRLVE-FTSSGSVLLFVTKK 508
Query: 326 KECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVR 385
E++A L+Q G + H DMD + R KV + K + V+V T G++ P ++
Sbjct: 509 ANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIK 568
Query: 386 FVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPAD 423
VI++ +++ ++T+ GR GR G P D
Sbjct: 569 TVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606
>UNIPROTKB|F1RSJ7 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:CU466402 EMBL:CU466386
Ensembl:ENSSSCT00000018821 Uniprot:F1RSJ7
Length = 941
Score = 177 (67.4 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 79/338 (23%), Positives = 144/338 (42%)
Query: 100 INAVLSGRDVLVIMAAGGGKSLCYQLPAVLR----------EG-IALVVSPLLSLIQD-Q 147
+ LSGRD++ I G GK+ + P ++ +G IA++V P L Q
Sbjct: 284 VPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIH 343
Query: 148 VMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKC 207
C G A+ L S +A EG +++ TP ++ + +K
Sbjct: 344 AEC-KRFG-KAYNLRSVAVYGGGSMWEQAKALQEGA-EIVVCTPGRLIDHVK-----KKA 395
Query: 208 HHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLME 267
+ R+S + DEA G + Y+ I PD + +AT +K++ +
Sbjct: 396 TNLQRVSYLVFDEADRMFDMGFE----YQVRSIASHVRPDRQTLLFSATFRKKIEKLARD 451
Query: 268 ML--HIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSR 325
+L IR + N ++ +V S G + + + + E + +S S +++ +
Sbjct: 452 ILIDPIRVVQGDIGEANE-DVTQIVEILHS-GPSKWNWLTRRLVE-FTSSGSVLLFVTKK 508
Query: 326 KECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVR 385
E++A L+Q G + H DMD + R KV + K + V+V T G++ P ++
Sbjct: 509 ANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIK 568
Query: 386 FVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPAD 423
VI++ +++ ++T+ GR GR G P D
Sbjct: 569 TVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606
>UNIPROTKB|Q5R7D1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9601 "Pongo abelii" [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0008104 "protein
localization" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
CTD:11325 HOVERGEN:HBG081425 KO:K12835 EMBL:CR860187
RefSeq:NP_001126368.1 UniGene:Pab.3212 ProteinModelPortal:Q5R7D1
GeneID:100173349 KEGG:pon:100173349 Uniprot:Q5R7D1
Length = 942
Score = 177 (67.4 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 78/337 (23%), Positives = 144/337 (42%)
Query: 100 INAVLSGRDVLVIMAAGGGKSLCYQLPAVLR----------EG-IALVVSPLLSLIQDQV 148
+ LSGRD++ I G GK+ + P ++ +G IA++V P L Q Q+
Sbjct: 284 VPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQ-QI 342
Query: 149 MCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCH 208
A+ L S +A EG +++ TP ++ + +K
Sbjct: 343 HAEGKRFGKAYNLRSVAVYGGGSMWEQAKALQEGA-EIVVCTPGRLIDHVK-----KKAT 396
Query: 209 HAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEM 268
+ R+S + DEA G + Y+ I PD + +AT +K++ ++
Sbjct: 397 NLQRVSYLVFDEADRMFDMGFE----YQVRSIASHVRPDRQTLLFSATFRKKIEKLARDI 452
Query: 269 L--HIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRK 326
L IR + N ++ +V S G + + + + E + +S S +++ +
Sbjct: 453 LIDPIRVVQGDIGEANE-DVTQIVEILHS-GPSKWNWLTRRLVE-FTSSGSVLLFVTKKA 509
Query: 327 ECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRF 386
E++A L+Q G + H DMD + R KV + K + V+V T G++ P ++
Sbjct: 510 NAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKT 569
Query: 387 VIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPAD 423
VI++ +++ ++T+ GR GR G P D
Sbjct: 570 VINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606
>UNIPROTKB|E1BJD2 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:DAAA02049325 IPI:IPI00701280
Ensembl:ENSBTAT00000028046 Uniprot:E1BJD2
Length = 946
Score = 176 (67.0 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 79/338 (23%), Positives = 144/338 (42%)
Query: 100 INAVLSGRDVLVIMAAGGGKSLCYQLPAVLR----------EG-IALVVSPLLSLIQD-Q 147
+ LSGRD++ I G GK+ + P ++ +G IA++V P L Q
Sbjct: 284 VPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIH 343
Query: 148 VMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKC 207
C G A+ L S +A EG +++ TP ++ + +K
Sbjct: 344 AEC-KRFG-KAYNLRSVAVYGGGSMWEQAKALQEGA-EIVVCTPGRLIDHVK-----KKA 395
Query: 208 HHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLME 267
+ R+S + DEA G + Y+ I PD + +AT +K++ +
Sbjct: 396 TNLQRVSYLVFDEADRMFDMGFE----YQVRSIASHVRPDRQTLLFSATFRKKIEKLARD 451
Query: 268 ML--HIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSR 325
+L IR + N ++ +V S K + + + + E + +S S +++ +
Sbjct: 452 ILIDPIRVVQGDIGEANE-DVTQIVEILHSGSKW--NWLTRRLVE-FTSSGSVLLFVTKK 507
Query: 326 KECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVR 385
E++A L+Q G + H DMD + R KV + K + V+V T G++ P ++
Sbjct: 508 ANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIK 567
Query: 386 FVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPAD 423
VI++ +++ ++T+ GR GR G P D
Sbjct: 568 TVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 605
>POMBASE|SPBP8B7.16c [details] [associations]
symbol:dbp2 "ATP-dependent RNA helicase Dbp2"
species:4896 "Schizosaccharomyces pombe" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBP8B7.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:0000184
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY OrthoDB:EOG47SWP6
EMBL:X52648 EMBL:L11574 PIR:T40810 RefSeq:NP_596523.1
ProteinModelPortal:P24782 IntAct:P24782 STRING:P24782 PRIDE:P24782
EnsemblFungi:SPBP8B7.16c.1 GeneID:2541383 KEGG:spo:SPBP8B7.16c
NextBio:20802492 Uniprot:P24782
Length = 550
Score = 172 (65.6 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 84/379 (22%), Positives = 155/379 (40%)
Query: 88 GIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQ 147
G A QQ+ +SGRD++ I A G GK+L Y LPA++ + PLLS
Sbjct: 141 GFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVH----INAQPLLSPGDGP 196
Query: 148 VMCLAALGIPAHMLTSTTSKEDEKF----------IYKALEKGEGELKMLYVTPEKISKS 197
++ + A P L +E KF +Y + +G ++ I+
Sbjct: 197 IVLVLA---PTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATP 253
Query: 198 KRFMSKLEKCH-HAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTAT 256
R + L+ + R++ + +DEA G F P + I+ PD + +AT
Sbjct: 254 GRLLDMLDSNKTNLRRVTYLVLDEADRMLDMG--FEPQIRK--IVDQIRPDRQTVMFSAT 309
Query: 257 ATQKVQNDLMEML--HIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPN 314
++VQ + L +I+ + + N+ +V + K + K I+E +
Sbjct: 310 WPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRA--RLGKDIEEVLKD 367
Query: 315 SESGI-VYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTV 373
++ + ++ +++ + + + LRQ G A H D + R+ V + K ++V T
Sbjct: 368 RDNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATD 427
Query: 374 AFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFY 433
GI+ + V ++ + E Y GR GR G +F + + +V
Sbjct: 428 VASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQARELVSI 487
Query: 434 ENSGLQN----LYDIVRYS 448
+ Q+ L ++ RYS
Sbjct: 488 LSEAKQDIDPKLEEMARYS 506
>POMBASE|SPAC1006.07 [details] [associations]
symbol:SPAC1006.07 "translation initiation factor eIF4A
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0002183
"cytoplasmic translational initiation" evidence=NAS] [GO:0003743
"translation initiation factor activity" evidence=ISO] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISO] [GO:0005524
"ATP binding" evidence=IC] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006413 "translational initiation" evidence=ISO] [GO:0016281
"eukaryotic translation initiation factor 4F complex" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1006.07 GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0016281 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0002183 KO:K03257 OrthoDB:EOG4PG98F
EMBL:X80796 EMBL:L40627 PIR:S71745 RefSeq:NP_594854.1
ProteinModelPortal:P47943 SMR:P47943 STRING:P47943 PRIDE:P47943
EnsemblFungi:SPAC1006.07.1 GeneID:2542948 KEGG:spo:SPAC1006.07
OMA:PILEMED NextBio:20803983 Uniprot:P47943
Length = 392
Score = 169 (64.5 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 79/368 (21%), Positives = 153/368 (41%)
Query: 87 FGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAV------LREGIALVVSPL 140
+G A QQ I +L RDVL +G GK+ + + + L++ AL+++P
Sbjct: 37 YGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQKIDTSLKQCQALILAPT 96
Query: 141 LSLIQDQVMCLAALG----IPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISK 196
L Q + ALG + H T D+ AL+ G + ++ TP ++
Sbjct: 97 RELAQQIQKVVVALGDLMNVECHACIGGTLVRDDM---AALQAG---VHVVVGTPGRVHD 150
Query: 197 SKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTAT 256
+ + + + +DEA F+ + I + P ++ L+AT
Sbjct: 151 MIQ-----RRALPTDAVQMFVLDEAD--EMLSRGFKDQIYD--IFQLLPPTAQVVLLSAT 201
Query: 257 ATQKVQNDLMEMLH--IRKCIKFVS-TINRPNLFYMVREKSSVGKVVIDEIAKYIQESYP 313
Q V + + IR +K T+ FY+ EK K +D + + E+
Sbjct: 202 MPQDVLEVTTKFMRDPIRILVKKDELTLEGIKQFYVAVEKEE-WK--LDTLCD-LYETVT 257
Query: 314 NSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTV 373
+++ +++C +R++ + + ++L +R + H DMD R+ + + ++++ T
Sbjct: 258 VTQA-VIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILITTD 316
Query: 374 AFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFY 433
GI+ V VI++ L + E Y GR GR G + F DV + +
Sbjct: 317 LLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVSINFVTNDDVRMMREIEQF 376
Query: 434 ENSGLQNL 441
N+ ++ +
Sbjct: 377 YNTHIEEM 384
>ZFIN|ZDB-GENE-030131-18 [details] [associations]
symbol:si:dkey-156n14.5 "si:dkey-156n14.5"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-18 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
KO:K13178 EMBL:CR626864 IPI:IPI00896916 RefSeq:XP_001923830.1
UniGene:Dr.75535 Ensembl:ENSDART00000129202 GeneID:556764
KEGG:dre:556764 NextBio:20881652 ArrayExpress:F1QBS1 Bgee:F1QBS1
Uniprot:F1QBS1
Length = 671
Score = 173 (66.0 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 85/346 (24%), Positives = 147/346 (42%)
Query: 104 LSGRDVLVIMAAGGGKSLCYQLPAV--------LREG---IALVVSPLLSLIQDQVMCLA 152
LSGRD++ I G GK+L Y LPA+ L G I LV++P L Q QV +A
Sbjct: 130 LSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQ-QVQQVA 188
Query: 153 ALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEK-ISKSKRFMSKLEKCH-HA 210
+ + ST +Y KG +++ L E I+ R + LE +
Sbjct: 189 FDYGKSSRIKSTC-------VYGGAPKGP-QIRDLERGVEICIATPGRLIDFLEVGKTNL 240
Query: 211 GRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEML- 269
R + + +DEA G F P + I+ PD + +AT ++V+ + L
Sbjct: 241 RRCTYLVLDEADRMLDMG--FEPQIRK--IVDQIRPDRQTLMWSATWPKEVRQLAEDFLQ 296
Query: 270 -HIRKCIKFVSTINRPNLFYMV---REKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSR 325
+++ I + N+ +V E K++ ++ + I N I++ ++
Sbjct: 297 DYVQINIGALELSANHNILQIVDVCMENEKDNKLI--QLMEEIMAEKENKT--IIFVETK 352
Query: 326 KECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVR 385
K C+++ + +R+ G A H D R+ V + K +++ T G++ DV+
Sbjct: 353 KRCDELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSGKAPILIATDVASRGLDVEDVK 412
Query: 386 FVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMV 431
FVI++ S E Y GR R FF P ++ + +V
Sbjct: 413 FVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLRQARDLV 458
>TAIR|locus:2222617 [details] [associations]
symbol:AT5G14610 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009664
"plant-type cell wall organization" evidence=RCA] [GO:0042545 "cell
wall modification" evidence=RCA] InterPro:IPR000629
InterPro:IPR001202 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00397 PROSITE:PS00039
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194 SMART:SM00456
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GO:GO:0003676
Gene3D:2.20.70.10 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
KO:K12823 IPI:IPI00992350 RefSeq:NP_196965.2 UniGene:At.43560
ProteinModelPortal:F4K6V1 SMR:F4K6V1 PRIDE:F4K6V1
EnsemblPlants:AT5G14610.1 GeneID:831313 KEGG:ath:AT5G14610
OMA:YLIPGFM Uniprot:F4K6V1
Length = 712
Score = 172 (65.6 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 83/348 (23%), Positives = 150/348 (43%)
Query: 104 LSGRDVLVIMAAGGGKSLCYQLPAVL---------REG-IALVVSPLLSLI-QDQVMCLA 152
+ RD++ I G GK+L Y +P + R G LV+SP L Q QV L
Sbjct: 264 MQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPTILVLSPTRELATQIQVEALK 323
Query: 153 ---ALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHH 209
+ I L K + K +E+G + ++ TP +++ M ++ H
Sbjct: 324 FGKSSKISCACLYGGAPKGPQ---LKEIERG---VDIVVATPGRLNDILE-MKRIS-LH- 374
Query: 210 AGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEML 269
++S + +DEA G F P + + + + +M TAT ++V+ ++L
Sbjct: 375 --QVSYLVLDEADRMLDMG--FEPQIRKI-VNEVPTKRQTLM-YTATWPKEVRKIAADLL 428
Query: 270 HIRKCIKFVSTINRPNLFYMVREKSSVGKV-VIDEIAKY--IQESYPNSESG---IVYCF 323
+ + +N N+ +V KS + V+ + K+ +++ + E G I++C
Sbjct: 429 -VNP-----AQVNIGNVDELVANKSITQTIEVLAPMEKHSRLEQILRSQEPGSKIIIFCS 482
Query: 324 SRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPD 383
+++ C+Q+A+ L R A H D R+ V ++ + V+V T G++ D
Sbjct: 483 TKRMCDQLARNLT-RTFGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKD 541
Query: 384 VRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMV 431
+R V+++ VE Y GR GR G FF D S ++
Sbjct: 542 IRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLI 589
>SGD|S000002428 [details] [associations]
symbol:FAL1 "Nucleolar protein required for maturation of 18S
rRNA" species:4932 "Saccharomyces cerevisiae" [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000462 "maturation of SSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0097078 "FAl1-SGD1 complex" evidence=IPI] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000002428 GO:GO:0005524
GO:GO:0005730 EMBL:BK006938 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 EMBL:X95966
EMBL:Z49770 GeneTree:ENSGT00680000100003 GO:GO:0000462 KO:K13025
OrthoDB:EOG4HTD1W EMBL:Z74317 EMBL:AY723767 PIR:S54644
RefSeq:NP_010304.3 RefSeq:NP_010309.3 ProteinModelPortal:Q12099
SMR:Q12099 DIP:DIP-4516N IntAct:Q12099 MINT:MINT-503789
STRING:Q12099 PaxDb:Q12099 PeptideAtlas:Q12099 EnsemblFungi:YDR021W
GeneID:851584 GeneID:851590 KEGG:sce:YDR021W KEGG:sce:YDR026C
CYGD:YDR021w KO:K09424 OMA:IFGKQPF NextBio:969055
Genevestigator:Q12099 GermOnline:YDR021W GO:GO:0097078
Uniprot:Q12099
Length = 399
Score = 134 (52.2 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 29/108 (26%), Positives = 54/108 (50%)
Query: 319 IVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMG 378
+++C ++K+ + ++Q L Q + H DM R+KV + +V++ T + G
Sbjct: 269 VIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARG 328
Query: 379 INKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPR 426
I+ V VI++ L + +E Y GR+GR G + F AD+ +
Sbjct: 329 IDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAK 376
Score = 80 (33.2 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 40/142 (28%), Positives = 66/142 (46%)
Query: 47 AFEASRGSPIQYGGSSSTAVENWSGTFEWDSRADDVRLNVF--GIPAYRANQQEIINAVL 104
+F+ +++ S V S TFE + DD+ ++ G A + Q I ++
Sbjct: 2 SFDREEDQKLKFKTSKKLKV---SSTFESMNLKDDLLRGIYSYGFEAPSSIQSRAITQII 58
Query: 105 SGRDVLVIMAAGGGKSLCYQ---LPAV-LREGI--ALVVSP---LLSLIQDQVMCLAA-L 154
SG+DV+ +G GK+ + L A+ LR+ AL++SP L S I V L +
Sbjct: 59 SGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVVKNLGDYM 118
Query: 155 GIPAHMLTS-TTSKEDEKFIYK 175
+ A +T T K+D K + K
Sbjct: 119 NVNAFAITGGKTLKDDLKKMQK 140
>SGD|S000003046 [details] [associations]
symbol:DBP3 "RNA-Dependent ATPase, member of DExD/H-box
family" species:4932 "Saccharomyces cerevisiae" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000464
"endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000003046 GO:GO:0005524
GO:GO:0005730 EMBL:BK006941 GO:GO:0003723 GO:GO:0030687
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S EMBL:M80437
EMBL:Z72600 PIR:S30805 RefSeq:NP_011437.3 RefSeq:NP_011442.3
ProteinModelPortal:P20447 SMR:P20447 DIP:DIP-2668N IntAct:P20447
MINT:MINT-1164200 STRING:P20447 PaxDb:P20447 PeptideAtlas:P20447
EnsemblFungi:YGL078C GeneID:852802 GeneID:852806 KEGG:sce:YGL073W
KEGG:sce:YGL078C CYGD:YGL078c GeneTree:ENSGT00680000100003
KO:K09419 OMA:EEEWPEK NextBio:972321 Genevestigator:P20447
GermOnline:YGL078C GO:GO:0000464 Uniprot:P20447
Length = 523
Score = 169 (64.5 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 86/399 (21%), Positives = 170/399 (42%)
Query: 72 TFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVL-- 129
+F++ S ++ + P Q +LSG+DV+ + G GK+ + +PA+
Sbjct: 115 SFDYLSLDSSIQAEISKFPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAISHL 174
Query: 130 -----REGI-ALVVSP---LLSLIQDQVMCLA-ALGIPAHMLTSTTSKEDEKFIYKALEK 179
+ GI LV+SP L S I D ++ L +G+ + K++++ L+K
Sbjct: 175 MNDQKKRGIQVLVISPTRELASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQRI---QLKK 231
Query: 180 GEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLG 239
+ ++ TP ++ + E +++ + +DEA + G F D KN+
Sbjct: 232 SQ----VVVATPGRLLDLLQ-----EGSVDLSQVNYLVLDEADRMLEKG--FEEDIKNI- 279
Query: 240 ILKTQFPDVPMMALTATATQKVQNDLMEMLH--IRKCIKFVS--TINRPNLFYMVREKSS 295
I +T + TAT ++V+ ++ I+ I T N+ + +V
Sbjct: 280 IRETDASKRQTLMFTATWPKEVRELASTFMNNPIKVSIGNTDQLTANK-RITQIVEVVDP 338
Query: 296 VGKV--VIDEIAKYIQESYPN-SESGIVYCFSRKECEQVAQELRQRGISADYYHADMDIN 352
GK +++ + KY S P +E +++ +KE +V + L+ G + H D+
Sbjct: 339 RGKERKLLELLKKY--HSGPKKNEKVLIFALYKKEAARVERNLKYNGYNVAAIHGDLSQQ 396
Query: 353 AREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLP 412
R + + K +++ T G++ P+V+ VI+ + +VE Y GR GR G
Sbjct: 397 QRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQT 456
Query: 413 SECLLFFRPADVPRQSSMVFYENSGLQNL-YDIVRYSQY 450
F + +V N Q + D++++ +
Sbjct: 457 GTAHTLFTEQEKHLAGGLVNVLNGANQPVPEDLIKFGTH 495
>DICTYBASE|DDB_G0288501 [details] [associations]
symbol:ddx42 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0288501 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000154_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000112 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
KO:K12835 RefSeq:XP_636700.1 ProteinModelPortal:Q54IV3
STRING:Q54IV3 EnsemblProtists:DDB0233432 GeneID:8626657
KEGG:ddi:DDB_G0288501 OMA:DRDKRGG Uniprot:Q54IV3
Length = 986
Score = 172 (65.6 bits), Expect = 4.4e-09, P = 4.4e-09
Identities = 88/412 (21%), Positives = 168/412 (40%)
Query: 35 YERQSELKSLLE--AFEASRGSPIQYGGSSSTAVENWSGTFEWDSRADDVRLNVFG---I 89
YE ++ +L E FE + I+ G+ G + +D D+ L I
Sbjct: 270 YEEHPDIANLTEEQVFEIRKNLDIRMTGTDLINPVTSFGHYGFD----DILLQAIAKQSI 325
Query: 90 PAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQV- 148
Q++ I LSGRD++ I G GK+ + P++ ++ P L +
Sbjct: 326 ETPTPIQKQAIPIALSGRDLIAIAKTGSGKTATFIWPSISH----IMDQPYLEKGDGPIA 381
Query: 149 MCLAALGIPAHMLTSTTSKEDEKF------IYKALEKGEG--ELK----MLYVTPEKISK 196
+ LA AH + T K + F +Y + K + ELK ++ TP ++
Sbjct: 382 LFLAPTRELAHQIYLETLKYSKYFKLKTTVLYGGVSKQQQCKELKAGCEIIVATPGRLID 441
Query: 197 SKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTAT 256
M KL K R+S + +DEA +G F P L I+ PD + +AT
Sbjct: 442 ----MIKL-KATKLNRVSYLVLDEADKMFDFG--FGPQV--LSIVNHVRPDRQTLLFSAT 492
Query: 257 ATQKVQNDLMEMLH--IRKCIKFVSTINRP--NLFYMVREKSSVGKVVIDEIAKYIQESY 312
V+ +L I+ I + + N + +++ S + +++A + +
Sbjct: 493 FKPNVEEFARTILSDPIKISIGMIGSANSDITQIVQVLKSDSDKWNWLTNQLALLLSQG- 551
Query: 313 PNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGT 372
S +++ ++ EQ++ L + G H D + R + + + K+ +++ T
Sbjct: 552 ----SVLIFVSTKVAVEQLSSNLTKFGFQTCTLHGDKNQIERSQTIQTFKEGKINILIAT 607
Query: 373 VAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADV 424
G++ P ++ V+++ S+ +E++ GR GR G P D+
Sbjct: 608 DVAARGLDIPLIKNVVNYDTSRDIESHTHRIGRTGRAGNTGVAYTLITPKDI 659
>WB|WBGene00022029 [details] [associations]
symbol:Y65B4A.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0018991 "oviposition" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0018991 GO:GO:0002119
GO:GO:0018996 GO:GO:0040011 GO:GO:0003676 GO:GO:0042127
GO:GO:0040035 GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00530000062880 KO:K13025 OMA:EDWKFDT EMBL:FO081482
RefSeq:NP_490761.2 ProteinModelPortal:Q9BL61 SMR:Q9BL61
STRING:Q9BL61 PaxDb:Q9BL61 EnsemblMetazoa:Y65B4A.6 GeneID:190485
KEGG:cel:CELE_Y65B4A.6 UCSC:Y65B4A.6 CTD:190485 WormBase:Y65B4A.6
InParanoid:Q9BL61 NextBio:945920 Uniprot:Q9BL61
Length = 399
Score = 166 (63.5 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 77/362 (21%), Positives = 161/362 (44%)
Query: 78 RADDVR-LNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAV------LR 130
R D +R + +G A QQ I A+L RDV+ +G GK+ + + + +R
Sbjct: 34 REDLLRGIYAYGFEKPSAIQQRAIPAILKARDVIAQAQSGTGKTATFSISVLQSLDTQVR 93
Query: 131 EGIALVVSPLLSL-IQDQVMCLAA---LGIPAHMLTSTTSKEDEKFIYKALEKGEGELKM 186
E AL++SP L +Q Q + LA + + H T+ ++ + L+ G+ +
Sbjct: 94 ETQALILSPTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGED---IRKLDYGQ---HV 147
Query: 187 LYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFP 246
+ TP ++ R + + + L+ +DEA G F+ + I + P
Sbjct: 148 VSGTPGRVFDMIRRRNLRTRA-----IKLLVLDEADEMLNKG--FKEQLYD--IYRYLPP 198
Query: 247 DVPMMALTATATQKVQNDLMEMLH--IRKCIKFVS-TINRPNLFYMVREKSSVG-KVVID 302
++ L+AT ++ + + IR +K T+ F++ ++ +ID
Sbjct: 199 GAQVVLLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLID 258
Query: 303 EIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWS 362
+ ++ +++ +++C +R++ + + ++++ + H DM+ R++V +
Sbjct: 259 -----LYDTLTITQA-VLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFR 312
Query: 363 KNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPA 422
+V++ T + G++ P V VI++ L + E Y GR+GR G + F +
Sbjct: 313 AGTTRVLISTDVWARGLDVPQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQD 372
Query: 423 DV 424
DV
Sbjct: 373 DV 374
>WB|WBGene00018007 [details] [associations]
symbol:F33D11.10 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0051301
"cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0018996 "molting
cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0018996 GO:GO:0003676
GO:GO:0000910 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00530000062880 GO:GO:0001703 KO:K13025 OMA:IFGKQPF
EMBL:FO080753 PIR:T32773 RefSeq:NP_491703.1
ProteinModelPortal:O44781 SMR:O44781 DIP:DIP-27243N IntAct:O44781
MINT:MINT-1047941 STRING:O44781 PaxDb:O44781
EnsemblMetazoa:F33D11.10.1 EnsemblMetazoa:F33D11.10.2 GeneID:172258
KEGG:cel:CELE_F33D11.10 UCSC:F33D11.10.1 CTD:172258
WormBase:F33D11.10 InParanoid:O44781 NextBio:874709 Uniprot:O44781
Length = 399
Score = 165 (63.1 bits), Expect = 5.8e-09, P = 5.8e-09
Identities = 76/362 (20%), Positives = 161/362 (44%)
Query: 78 RADDVR-LNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAV------LR 130
R D +R + +G A QQ + A+L RDV+ +G GK+ + + + +R
Sbjct: 34 REDLLRGIYAYGFEKPSAIQQRAVPAILKARDVIAQAQSGTGKTATFSISVLQSLDTQVR 93
Query: 131 EGIALVVSPLLSL-IQDQVMCLAA---LGIPAHMLTSTTSKEDEKFIYKALEKGEGELKM 186
E AL++SP L +Q Q + LA + + H T+ ++ + L+ G+ +
Sbjct: 94 ETQALILSPTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGED---IRKLDYGQ---HV 147
Query: 187 LYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFP 246
+ TP ++ R + + + L+ +DEA G F+ + I + P
Sbjct: 148 VSGTPGRVFDMIRRRNLRTRA-----IKLLVLDEADEMLNKG--FKEQLYD--IYRYLPP 198
Query: 247 DVPMMALTATATQKVQNDLMEMLH--IRKCIKFVS-TINRPNLFYMVREKSSVG-KVVID 302
++ L+AT ++ + + IR +K T+ F++ ++ +ID
Sbjct: 199 GAQVVLLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLID 258
Query: 303 EIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWS 362
+ ++ +++ +++C +R++ + + ++++ + H DM+ R++V +
Sbjct: 259 -----LYDTLTITQA-VLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFR 312
Query: 363 KNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPA 422
+V++ T + G++ P V VI++ L + E Y GR+GR G + F +
Sbjct: 313 AGTTRVLISTDVWARGLDVPQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQD 372
Query: 423 DV 424
DV
Sbjct: 373 DV 374
>WB|WBGene00019219 [details] [associations]
symbol:H20J04.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0002009 GO:GO:0040010
GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14778 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:FO080156
RefSeq:NP_001040789.1 ProteinModelPortal:Q2WF63 SMR:Q2WF63
PaxDb:Q2WF63 EnsemblMetazoa:H20J04.4b GeneID:186756
KEGG:cel:CELE_H20J04.4 UCSC:H20J04.4a CTD:186756 WormBase:H20J04.4b
InParanoid:Q2WF63 NextBio:932876 ArrayExpress:Q2WF63 Uniprot:Q2WF63
Length = 561
Score = 167 (63.8 bits), Expect = 6.8e-09, P = 6.8e-09
Identities = 99/436 (22%), Positives = 177/436 (40%)
Query: 8 QELENVEAEVRLVQEQIKQLVDRQDQLYERQSELKSLLEAFEASRGSP--IQYGGSSSTA 65
+ ++N E E E ++ D E +SE + E F++S +P IQ + T
Sbjct: 30 KSVKNEEFEEFEDGEDVEDEEDEASDEDEEESEGEEGDE-FKSSDDTPKPIQISEDNMTT 88
Query: 66 VE-NWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQ 124
+ + G W ++ +L I Q I +L G D+L G GK+L +
Sbjct: 89 KKFSQLGVCSWITQ----QLQTMQIKTATPVQAACIPKILEGSDILGCARTGTGKTLAFA 144
Query: 125 LPAVLR-----EGI-ALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALE 178
+P + + GI AL+++P L ALG P + S I++A E
Sbjct: 145 IPILQKLSVDPYGIYALILTPTRELAFQIAEQFTALGKPITLKCSVIVG-GRSLIHQARE 203
Query: 179 KGEGELKMLYVTPEKISKS-KRFMSKLEKCHHAGRLSLISIDEAHCC--SQWGHDFRPDY 235
E ++ TP +++ + + K ++ +DEA Q+ +P +
Sbjct: 204 LSERP-HVVVATPGRLADLIESDPDTIAKVFK--KIQFFVLDEADRMLEGQYNDQLKPIF 260
Query: 236 KNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFV-------STINRPNLFY 288
+++ K Q + L+AT T + +++ + RK F ST++R Y
Sbjct: 261 ESISE-KRQ-----TLLLSATITNNI--NMLHRVSTRKPYFFEDKGKDDESTVDRLEQKY 312
Query: 289 MVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHAD 348
+V + V + + K E P S S +++ + +EC+ +A G H+
Sbjct: 313 VVCPVA-VKDAYLVYVVKNYSEKNPKS-SVMIFAQTCRECQALAYMFEGLGFRVGSLHSQ 370
Query: 349 MDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGR 408
+ R + LQVI+ T G++ P V V++H++ + +TY GR+ R
Sbjct: 371 IPQKQRLAALSAFRSKTLQVIICTDVASRGLDIPHVDLVVNHNVPQCPKTYIHRVGRSAR 430
Query: 409 DGLPSECLLFFRPADV 424
G L F DV
Sbjct: 431 AGRFGSALSFVTQYDV 446
>UNIPROTKB|E1C2R8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0072358 "cardiovascular system
development" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
OMA:QQFPQPP EMBL:AADN02006148 EMBL:AADN02006147 IPI:IPI00594176
Ensembl:ENSGALT00000020002 Uniprot:E1C2R8
Length = 496
Score = 166 (63.5 bits), Expect = 7.0e-09, P = 7.0e-09
Identities = 84/346 (24%), Positives = 145/346 (41%)
Query: 104 LSGRDVLVIMAAGGGKSLCYQLPAV--------LREG---IALVVSPLLSLIQDQVMCLA 152
LSGRD++ I G GK+L Y LPA+ L G I LV++P L Q QV +A
Sbjct: 125 LSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQ-QVQQVA 183
Query: 153 ALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEK-ISKSKRFMSKLEKCH-HA 210
L ST IY KG +++ L E I+ R + LE +
Sbjct: 184 DDYGKCSRLKSTC-------IYGGAPKGP-QIRDLERGVEICIATPGRLIDFLEAGKTNL 235
Query: 211 GRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEML- 269
R + + +DEA G F P + I+ PD + +AT ++V+ + L
Sbjct: 236 RRCTYLVLDEADRMLDMG--FEPQIRK--IVDQIRPDRQTLMWSATWPKEVRQLAEDFLQ 291
Query: 270 -HIRKCIKFVSTINRPNLFYMV---REKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSR 325
+++ + + N+ +V E K++ ++ + I N I++ ++
Sbjct: 292 DYVQINVGNLELSANHNILQIVDVCMESEKDHKLI--QLMEEIMAEKENKT--IIFVETK 347
Query: 326 KECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVR 385
+ C+ + + +R+ G A H D R+ V + K +++ T G++ DV+
Sbjct: 348 RRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVK 407
Query: 386 FVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMV 431
FVI++ S E Y GR R FF P ++ + ++
Sbjct: 408 FVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELI 453
>TAIR|locus:2091191 [details] [associations]
symbol:EIF4A-III "eukaryotic initiation factor 4A-III"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0016020 "membrane" evidence=IDA] [GO:0001666 "response to
hypoxia" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IPI] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0035145 "exon-exon junction complex" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0016020
GO:GO:0016607 GO:GO:0001666 GO:GO:0006397 GO:GO:0003723
EMBL:AP000417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 GO:GO:0035145 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 KO:K13025
OMA:EDWKFDT EMBL:AJ010456 EMBL:AY050367 EMBL:BT002207
IPI:IPI00522986 PIR:T51737 RefSeq:NP_188610.1 UniGene:At.22577
ProteinModelPortal:Q94A52 SMR:Q94A52 STRING:Q94A52 PaxDb:Q94A52
PRIDE:Q94A52 EnsemblPlants:AT3G19760.1 GeneID:821513
KEGG:ath:AT3G19760 GeneFarm:908 TAIR:At3g19760 InParanoid:Q94A52
PhylomeDB:Q94A52 ProtClustDB:CLSN2915442 Genevestigator:Q94A52
GermOnline:AT3G19760 Uniprot:Q94A52
Length = 408
Score = 164 (62.8 bits), Expect = 7.9e-09, P = 7.9e-09
Identities = 71/356 (19%), Positives = 154/356 (43%)
Query: 80 DDVRLNVF--GIPAYRANQQEIINAVLSGRDVLVIMAAGGGK------SLCYQLPAVLRE 131
+DV V+ G A QQ + +L GRDV+ +G GK S+C + RE
Sbjct: 44 EDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQVVDTSSRE 103
Query: 132 GIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTP 191
AL++SP L + A+G+ A++ + + + + K E + ++ TP
Sbjct: 104 VQALILSPTRELATQTEKTIQAIGLHANIQAHACIGGNS--VGEDIRKLEHGVHVVSGTP 161
Query: 192 EKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMM 251
++ M K + + L+ +DE+ F+ + + + PD+ +
Sbjct: 162 GRVCD----MIK-RRSLRTRAIKLLILDESD--EMLSRGFKDQIYD--VYRYLPPDLQVC 212
Query: 252 ALTATATQKVQNDLMEMLH--IRKCIKFVS-TINRPNLFYMVREKSSVGKVVIDEIAKYI 308
++AT ++ + + ++ +K T+ F++ EK K D + +
Sbjct: 213 LVSATLPHEILEMTSKFMTEPVKILVKRDELTLEGIKQFFVAVEKEE-WK--FDTLCD-L 268
Query: 309 QESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQV 368
++ +++ +++C ++++ + +++++R + H DM R+ + + +V
Sbjct: 269 YDTLTITQA-VIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRV 327
Query: 369 IVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADV 424
++ T + GI+ V VI++ L + E Y GR+GR G + F + D+
Sbjct: 328 LITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDI 383
>UNIPROTKB|E1BSE5 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:AADN02041229
EMBL:AADN02041230 IPI:IPI00819993 Ensembl:ENSGALT00000013903
ArrayExpress:E1BSE5 Uniprot:E1BSE5
Length = 402
Score = 131 (51.2 bits), Expect = 8.4e-09, Sum P(2) = 8.4e-09
Identities = 23/106 (21%), Positives = 53/106 (50%)
Query: 319 IVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMG 378
+++C ++++ + + +++R+ + H DM RE + + +V++ T + G
Sbjct: 277 VIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARG 336
Query: 379 INKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADV 424
++ P V +I++ L + E Y GR+GR G + F + D+
Sbjct: 337 LDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDI 382
Score = 79 (32.9 bits), Expect = 8.4e-09, Sum P(2) = 8.4e-09
Identities = 26/88 (29%), Positives = 43/88 (48%)
Query: 78 RADDVR-LNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAV------LR 130
R D +R + +G A QQ I ++ GRDV+ +G GK+ + + + +R
Sbjct: 47 REDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVR 106
Query: 131 EGIALVVSPLLSL-IQDQVMCLAALGIP 157
E AL+++P L +Q Q LA +P
Sbjct: 107 ETQALILAPTRELAVQIQKSLLATGEVP 134
>GENEDB_PFALCIPARUM|PFL1310c [details] [associations]
symbol:PFL1310c "ATP-dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0016070 "RNA
metabolic process" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014188 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_001350668.1
ProteinModelPortal:Q8I5E7 PRIDE:Q8I5E7
EnsemblProtists:PFL1310c:mRNA GeneID:811314 KEGG:pfa:PFL1310c
EuPathDB:PlasmoDB:PF3D7_1227100 ProtClustDB:CLSZ2500975
Uniprot:Q8I5E7
Length = 742
Score = 158 (60.7 bits), Expect = 9.2e-09, Sum P(2) = 9.2e-09
Identities = 50/209 (23%), Positives = 102/209 (48%)
Query: 216 ISIDEAHCCSQWGHDFRPDYKNLGILKTQF-PDVPMMALTATATQKVQN---DLMEMLHI 271
+ IDEA G + K L + TQ + ++ LTAT ++V+ D +
Sbjct: 505 VVIDEADRLLDMGFE-----KQLRKIMTQVNKNKQLLFLTATWPEQVRKLAYDFCSYDPV 559
Query: 272 RKCI-KFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQ 330
+ I K T N+ N+ V SS+ + ++ +++E+Y N++ +++C +++ C+
Sbjct: 560 KIQIGKNELTANK-NIEQNVIISSSID--MKKKLLDWLKENYENNKI-LIFCDTKRNCDN 615
Query: 331 VAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHH 390
+ +ELR +A H D R+++ + ++ ++V T G++ ++ VI++
Sbjct: 616 LCKELRYHQYNALSIHGDKQQRERDRILNNYKTDRCNILVATDVASRGLDIKNISVVINY 675
Query: 391 SLSKSVETYYQESGRAGRDGLPSECLLFF 419
+ ++E Y GR GR G + +LFF
Sbjct: 676 DIPNTIEDYIHRIGRTGRAGKKGKSILFF 704
Score = 58 (25.5 bits), Expect = 9.2e-09, Sum P(2) = 9.2e-09
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 104 LSGRDVLVIMAAGGGKSLCYQLPAVL 129
LSG+D++ + G GK+L + LP +
Sbjct: 322 LSGKDLIGVAETGSGKTLAFVLPCFM 347
>UNIPROTKB|Q3MSQ8 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:45623 "Pelophylax lessonae" [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0030154 GO:GO:0048477 GO:GO:0007283 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071546
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AJ841700
ProteinModelPortal:Q3MSQ8 SMR:Q3MSQ8 Uniprot:Q3MSQ8
Length = 724
Score = 167 (63.8 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 84/368 (22%), Positives = 151/368 (41%)
Query: 72 TFEWDSRADDVRLNVF--GIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVL 129
TFE + D + NV G Q+ I +++GRD++ G GK+ + LP +
Sbjct: 287 TFEEANLCDSLAKNVCKSGYVKLTPIQKHSIPIIVAGRDLMACAQTGSGKTAAFLLPILA 346
Query: 130 REGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGE---GELKM 186
+ V S +++ + A P L + + KF Y + G +M
Sbjct: 347 HLMVKGVESSAFQTLKEPEAIIVA---PTRELINQIYLDARKFSYGTCVRPVVIYGGTQM 403
Query: 187 LYVTPEKISKS--------KRFMSKLEKCHHAG--RLSLISIDEAHCCSQWGHDFRPDYK 236
+ + ++IS+ R + + K G +L + +DEA G FR D +
Sbjct: 404 FH-SLKQISEGCNILCATPGRLLDVIRK-EKIGLTKLRYLVLDEADRMLDMG--FREDIE 459
Query: 237 NLGILKTQFP---DVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRP--NLFYMVR 291
NL + + P + + +AT +Q+ E+L V + ++ MV
Sbjct: 460 NL-LKSSGMPSKEERQTLMFSATFPSSIQSLAREILKPDYLFVVVGQVGGACSDVEQMVI 518
Query: 292 EKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDI 351
E GK D++ + +QE SE +V+ ++K+ + +A L Q + + H D +
Sbjct: 519 EVDEFGKK--DKLMEILQEI--GSERTMVFVKTKKKADFIATFLCQEKVPSTSIHGDREQ 574
Query: 352 NAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGL 411
RE + + VIV T G++ +V +VI+ + ++ Y GR GR G
Sbjct: 575 KERETALRDFRTGQCPVIVATSVAARGLDIENVSYVINFDIPDDIDEYVHRIGRTGRCGN 634
Query: 412 PSECLLFF 419
+ FF
Sbjct: 635 TGRAISFF 642
>UNIPROTKB|Q8EGU0 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 145 (56.1 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 38/101 (37%), Positives = 49/101 (48%)
Query: 324 SRKEC-EQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKP 382
S KEC E + QEL GISA +H D AR +V + KL+V+V T G++
Sbjct: 249 STKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVLVATDVAARGLDIQ 308
Query: 383 DVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPAD 423
+ VI+ L E Y GR GR GL + F PAD
Sbjct: 309 ALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPAD 349
Score = 65 (27.9 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 96 QQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLL 141
QQ++I L G+D++ G GK+ + LP + + PLL
Sbjct: 28 QQQVIPLALVGKDIMACAQTGTGKTAAFALPVLEQLAAKPADKPLL 73
>TIGR_CMR|SO_1501 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 145 (56.1 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 38/101 (37%), Positives = 49/101 (48%)
Query: 324 SRKEC-EQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKP 382
S KEC E + QEL GISA +H D AR +V + KL+V+V T G++
Sbjct: 249 STKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVLVATDVAARGLDIQ 308
Query: 383 DVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPAD 423
+ VI+ L E Y GR GR GL + F PAD
Sbjct: 309 ALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPAD 349
Score = 65 (27.9 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 96 QQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLL 141
QQ++I L G+D++ G GK+ + LP + + PLL
Sbjct: 28 QQQVIPLALVGKDIMACAQTGTGKTAAFALPVLEQLAAKPADKPLL 73
>UNIPROTKB|F1P0H1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00610000086076 EMBL:AADN02056764
IPI:IPI00819332 Ensembl:ENSGALT00000040437 ArrayExpress:F1P0H1
Uniprot:F1P0H1
Length = 703
Score = 166 (63.5 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 85/409 (20%), Positives = 168/409 (41%)
Query: 31 QDQLYERQSELKSLL--EAFEASRGSPIQYGGSSSTAVENWSGTFEWDSRA-DDVRLNVF 87
+ Y+ E+ SL + E ++ G++ + F +D + +R + +
Sbjct: 209 EKNFYDEHEEITSLTPQQVVELRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEY 268
Query: 88 GIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR----------EG-IALV 136
P Q + + +SGRD++ I G GK+ + P ++ +G IA++
Sbjct: 269 TQPT--PIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVI 326
Query: 137 VSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISK 196
V P L Q G A+ L S +A EG +++ TP ++
Sbjct: 327 VCPTRELCQQIHSECKRFG-KAYNLRSVAVYGGGSMWEQAKALQEGA-EIVVCTPGRLID 384
Query: 197 SKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTAT 256
+ +K + R++ + DEA G + Y+ I PD + +AT
Sbjct: 385 HVK-----KKATNLQRVTYLVFDEADRMFDMGFE----YQVRSIASHVRPDRQTLLFSAT 435
Query: 257 ATQKVQNDLMEML--HIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPN 314
+K++ ++L IR + N ++ +V S G + + + + E + +
Sbjct: 436 FRKKIEKLARDILIDPIRVVQGDIGEANE-DVTQIVEIFPS-GPSKWNWLTRRLVE-FTS 492
Query: 315 SESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVA 374
S S +++ + E++A L+Q + H DMD + R KV + K + ++V T
Sbjct: 493 SGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPILVATDV 552
Query: 375 FGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPAD 423
G++ P ++ VI++ +++ ++T+ GR GR G P D
Sbjct: 553 AARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 601
>UNIPROTKB|O05855 [details] [associations]
symbol:rhlE "PROBABLE ATP-DEPENDENT RNA HELICASE RHLE"
species:83332 "Mycobacterium tuberculosis H37Rv" [GO:0005618 "cell
wall" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005618
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003676
EMBL:BX842582 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
HOGENOM:HOG000268807 EMBL:CP003248 PIR:D70595 RefSeq:NP_217727.1
RefSeq:NP_337835.1 RefSeq:YP_006516683.1 SMR:O05855
EnsemblBacteria:EBMYCT00000003215 EnsemblBacteria:EBMYCT00000071518
GeneID:13318029 GeneID:888840 GeneID:923099 KEGG:mtc:MT3307
KEGG:mtu:Rv3211 KEGG:mtv:RVBD_3211 PATRIC:18129030
TubercuList:Rv3211 OMA:RWQLIDK ProtClustDB:CLSK792349
Uniprot:O05855
Length = 527
Score = 164 (62.8 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 89/376 (23%), Positives = 161/376 (42%)
Query: 78 RADDVR-LNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR----EG 132
R + VR L GI A Q+ + L G DV+ G GK+ + +P + R +G
Sbjct: 18 RDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQRITSGDG 77
Query: 133 IA-LVVSP-LLSLIQDQVMCLAA---LGIPAHMLTSTTSKEDEKFIYKALEK----G--- 180
L +P L ++ + +CL L LT+ +D + + L G
Sbjct: 78 TRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSVVSIYGGRP 137
Query: 181 -EGELKMLYVTPEKISKSK-RFMSKLEKCH-HAGRLSLISIDEAHCCSQWGHDFRPDYKN 237
E +++ L + + + R + ++ H G LS++ +DEA G F PD +
Sbjct: 138 YEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLG--FLPDIER 195
Query: 238 LGILKTQFP-DVPMMALTATATQKV----QNDLMEMLHIRKCIKFVSTINRPNLFYMVRE 292
IL+ Q P D M +AT + + ++ HIR S ++ ++ R
Sbjct: 196 --ILR-QIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFVYRA 252
Query: 293 KSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDIN 352
+ + KV + +++ +Q + + +++ +++ ++VA EL +RG + H D+
Sbjct: 253 HA-LDKVEL--VSRVLQAR--DRGATMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQL 307
Query: 353 AREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLP 412
AREK + + V+V T GI+ DV VI++ + + Y GR GR G
Sbjct: 308 AREKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRT 367
Query: 413 SECLLFFRPADVPRQS 428
+ ++PR S
Sbjct: 368 GVAVTLVDWDELPRWS 383
>UNIPROTKB|Q5F485 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008104 "protein
localization" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
EMBL:AJ851415 IPI:IPI00576529 RefSeq:NP_001026097.1
UniGene:Gga.5156 ProteinModelPortal:Q5F485 STRING:Q5F485
GeneID:419959 KEGG:gga:419959 CTD:11325 HOGENOM:HOG000268793
HOVERGEN:HBG081425 InParanoid:Q5F485 KO:K12835 OrthoDB:EOG47WNN9
NextBio:20822943 Uniprot:Q5F485
Length = 944
Score = 167 (63.8 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 85/409 (20%), Positives = 168/409 (41%)
Query: 31 QDQLYERQSELKSLL--EAFEASRGSPIQYGGSSSTAVENWSGTFEWDSRA-DDVRLNVF 87
+ Y+ E+ SL + E ++ G++ + F +D + +R + +
Sbjct: 214 EKNFYDEHEEITSLTPQQVVELRHKLNLRVSGAAPPRPGSSFARFGFDEQLMHQIRKSEY 273
Query: 88 GIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR----------EG-IALV 136
P Q + + +SGRD++ I G GK+ + P ++ +G IA++
Sbjct: 274 TQPT--PIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVI 331
Query: 137 VSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISK 196
V P L Q G A+ L S +A EG +++ TP ++
Sbjct: 332 VCPTRELCQQIHSECKRFG-KAYNLRSVAVYGGGSMWEQAKALQEGA-EIVVCTPGRLID 389
Query: 197 SKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTAT 256
+ +K + R++ + DEA G + Y+ I PD + +AT
Sbjct: 390 HVK-----KKATNLQRVTYLVFDEADRMFDMGFE----YQVRSIASHVRPDRQTLLFSAT 440
Query: 257 ATQKVQNDLMEML--HIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPN 314
+K++ ++L IR + N ++ +V S G + + + + E + +
Sbjct: 441 FRKKIEKLARDILIDPIRVVQGDIGEANE-DVTQIVEIFPS-GPSKWNWLTRRLVE-FTS 497
Query: 315 SESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVA 374
S S +++ + E++A L+Q + H DMD + R KV + K + ++V T
Sbjct: 498 SGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPILVATDV 557
Query: 375 FGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPAD 423
G++ P ++ VI++ +++ ++T+ GR GR G P D
Sbjct: 558 AARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606
>UNIPROTKB|F1NQA6 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 EMBL:AADN02025730
IPI:IPI00822952 Ensembl:ENSGALT00000039070 ArrayExpress:F1NQA6
Uniprot:F1NQA6
Length = 603
Score = 164 (62.8 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 81/349 (23%), Positives = 148/349 (42%)
Query: 96 QQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAV------LREGI-ALVVSP---LLSLIQ 145
Q + I +L GR++L G GK+L + +P + + +G AL++SP L S
Sbjct: 186 QMQAIPVMLHGRELLASAPTGSGKTLAFCIPLLTHLKQPMNKGFRALIISPTRELASQTH 245
Query: 146 DQVMCLA-ALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKL 204
+++ LA G HM+ S+ +KF K+ K + +L TP ++ ++ K
Sbjct: 246 RELVKLADGTGFRIHMIQKA-SEAAKKFGPKSSRKFD----ILVTTPNRLI----YLLKQ 296
Query: 205 EK-CHHAGRLSLISIDEAHCCSQWGHD-FRPDYKNLGILKTQFPDVPMMALTATATQKVQ 262
+ + + +DE+ + G FR ++ + T V +AT V+
Sbjct: 297 DPPAIDLTSVEWLVVDESDKLFEDGKSGFRDQLASIFLACTSHV-VRRAFFSATFAHDVE 355
Query: 263 N------DLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSE 316
D + ++ + T+ + LF S GK+ + + +++ + +
Sbjct: 356 EWCKLNLDSIVLVSVGARNSAAETVEQELLFV----GSETGKLTA--MRELVKKGF--AP 407
Query: 317 SGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFG 376
+V+ S + +++ EL GI+ D HAD R+ V + K+ V++ T
Sbjct: 408 PVLVFVQSIERAKELFHELIYEGINVDVIHADKTQQQRDNVVHSFRAGKIWVLICTALLA 467
Query: 377 MGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVP 425
GI+ V VI++ L S Y GR GR G + + FF D P
Sbjct: 468 RGIDFKGVNMVINYDLPTSAVEYIHRIGRTGRAGHTGKAVTFFTEDDKP 516
>UNIPROTKB|E1C4M1 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:NVMKQSG
EMBL:AADN02025730 IPI:IPI00593921 ProteinModelPortal:E1C4M1
Ensembl:ENSGALT00000008815 ArrayExpress:E1C4M1 Uniprot:E1C4M1
Length = 604
Score = 164 (62.8 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 81/349 (23%), Positives = 148/349 (42%)
Query: 96 QQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAV------LREGI-ALVVSP---LLSLIQ 145
Q + I +L GR++L G GK+L + +P + + +G AL++SP L S
Sbjct: 186 QMQAIPVMLHGRELLASAPTGSGKTLAFCIPLLTHLKQPMNKGFRALIISPTRELASQTH 245
Query: 146 DQVMCLA-ALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKL 204
+++ LA G HM+ S+ +KF K+ K + +L TP ++ ++ K
Sbjct: 246 RELVKLADGTGFRIHMIQKA-SEAAKKFGPKSSRKF---VDILVTTPNRLI----YLLKQ 297
Query: 205 EK-CHHAGRLSLISIDEAHCCSQWGHD-FRPDYKNLGILKTQFPDVPMMALTATATQKVQ 262
+ + + +DE+ + G FR ++ + T V +AT V+
Sbjct: 298 DPPAIDLTSVEWLVVDESDKLFEDGKSGFRDQLASIFLACTSHV-VRRAFFSATFAHDVE 356
Query: 263 N------DLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSE 316
D + ++ + T+ + LF S GK+ + + +++ + +
Sbjct: 357 EWCKLNLDSIVLVSVGARNSAAETVEQELLFV----GSETGKLTA--MRELVKKGF--AP 408
Query: 317 SGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFG 376
+V+ S + +++ EL GI+ D HAD R+ V + K+ V++ T
Sbjct: 409 PVLVFVQSIERAKELFHELIYEGINVDVIHADKTQQQRDNVVHSFRAGKIWVLICTALLA 468
Query: 377 MGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVP 425
GI+ V VI++ L S Y GR GR G + + FF D P
Sbjct: 469 RGIDFKGVNMVINYDLPTSAVEYIHRIGRTGRAGHTGKAVTFFTEDDKP 517
>UNIPROTKB|F1NJ40 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008104 "protein localization" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00576529 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AADN02056764
Ensembl:ENSGALT00000000811 ArrayExpress:F1NJ40 Uniprot:F1NJ40
Length = 946
Score = 166 (63.5 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 85/409 (20%), Positives = 168/409 (41%)
Query: 31 QDQLYERQSELKSLL--EAFEASRGSPIQYGGSSSTAVENWSGTFEWDSRA-DDVRLNVF 87
+ Y+ E+ SL + E ++ G++ + F +D + +R + +
Sbjct: 216 EKNFYDEHEEITSLTPQQVVELRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEY 275
Query: 88 GIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR----------EG-IALV 136
P Q + + +SGRD++ I G GK+ + P ++ +G IA++
Sbjct: 276 TQPT--PIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVI 333
Query: 137 VSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISK 196
V P L Q G A+ L S +A EG +++ TP ++
Sbjct: 334 VCPTRELCQQIHSECKRFG-KAYNLRSVAVYGGGSMWEQAKALQEGA-EIVVCTPGRLID 391
Query: 197 SKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTAT 256
+ +K + R++ + DEA G + Y+ I PD + +AT
Sbjct: 392 HVK-----KKATNLQRVTYLVFDEADRMFDMGFE----YQVRSIASHVRPDRQTLLFSAT 442
Query: 257 ATQKVQNDLMEML--HIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPN 314
+K++ ++L IR + N ++ +V S G + + + + E + +
Sbjct: 443 FRKKIEKLARDILIDPIRVVQGDIGEANE-DVTQIVEIFPS-GPSKWNWLTRRLVE-FTS 499
Query: 315 SESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVA 374
S S +++ + E++A L+Q + H DMD + R KV + K + ++V T
Sbjct: 500 SGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPILVATDV 559
Query: 375 FGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPAD 423
G++ P ++ VI++ +++ ++T+ GR GR G P D
Sbjct: 560 AARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 608
>TIGR_CMR|BA_4509 [details] [associations]
symbol:BA_4509 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268806 OMA:YAHVEPK HSSP:P10081
RefSeq:NP_846734.1 RefSeq:YP_021153.1 RefSeq:YP_030436.1
ProteinModelPortal:Q81LV0 SMR:Q81LV0
EnsemblBacteria:EBBACT00000013143 EnsemblBacteria:EBBACT00000016547
EnsemblBacteria:EBBACT00000022918 GeneID:1088235 GeneID:2818505
GeneID:2850064 KEGG:ban:BA_4509 KEGG:bar:GBAA_4509 KEGG:bat:BAS4187
ProtClustDB:CLSK887589 BioCyc:BANT260799:GJAJ-4244-MONOMER
BioCyc:BANT261594:GJ7F-4386-MONOMER Uniprot:Q81LV0
Length = 436
Score = 161 (61.7 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 84/344 (24%), Positives = 150/344 (43%)
Query: 96 QQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR-----EGIALVVS-PLLSLIQ---D 146
QQ+I V G V+ G GK+ Y LP + R E + LV++ P L Q +
Sbjct: 31 QQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLNRINPGREEVQLVITAPTRELAQQIYE 90
Query: 147 QVMCLAALGIPAHMLTSTT--SKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKL 204
+++ L M+T+ D++ +++EK + + ++ TP +I K +
Sbjct: 91 EIVKLTKFCAEDQMITARCLIGGTDKQ---RSIEKLKKQPHIVVGTPGRI---KDLVE-- 142
Query: 205 EKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFP-DVPMMALTATATQKVQN 263
E+ + + I +DEA G F D + + P ++ M+ +AT QK++
Sbjct: 143 EQALFVHKANTIIVDEADLMLDMG--FIHDVDKIA---ARMPKNLQMLVFSATIPQKLKP 197
Query: 264 DLMEML----HIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGI 319
L + + HI K V+ N + Y+V K K ID + K + + P +
Sbjct: 198 FLKKYMENPEHIHINPKQVAAGNIEH--YLVPSKHR-NK--IDLVNKMLLQFKPYL--AV 250
Query: 320 VYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGI 379
V+ ++K +QVA L +RG+ H D+ R+K+ + + Q IV T GI
Sbjct: 251 VFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVATDLAARGI 310
Query: 380 NKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPAD 423
+ + VI++ L ++ + GR R G + + PA+
Sbjct: 311 DIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPAN 354
>UNIPROTKB|Q71YU6 [details] [associations]
symbol:LMOf2365_1746 "Helicase domain protein"
species:265669 "Listeria monocytogenes serotype 4b str. F2365"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017262
GenomeReviews:AE017262_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 RefSeq:YP_014341.1 ProteinModelPortal:Q71YU6
STRING:Q71YU6 GeneID:2799880 KEGG:lmf:LMOf2365_1746 PATRIC:20324779
HOGENOM:HOG000268811 OMA:MTIATPF ProtClustDB:CLSK564571
Uniprot:Q71YU6
Length = 442
Score = 161 (61.7 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 74/339 (21%), Positives = 148/339 (43%)
Query: 96 QQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR-EGIA----LVVSPLLSLIQDQVMC 150
Q + + G DVL + G GK++ Y LP + + E I LV++P L+ Q+
Sbjct: 26 QSAMYQPIKDGADVLAVSPTGTGKTVAYALPTLEKIEAIPKTQWLVLAPSHELVM-QITE 84
Query: 151 LAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHA 210
+ +P+ LT S + + +EK + + +++ +P + + + K K H
Sbjct: 85 VIRSWLPSDELT-VISLIGGANVKRQIEKLKKKPQIIVASPGRALELIK--QKKIKMHE- 140
Query: 211 GRLSLISIDEAHCCSQWGHDFRPDYKN-LGILKTQFPDVPMMALTATATQKVQNDLMEML 269
+ I++DE C Q + ++K+ L I+++ D + ++AT K++N M
Sbjct: 141 --IKTITLDE---CDQLLR--QENFKSTLEIVESAVRDRQLTLVSAT---KLENPDMFFA 190
Query: 270 HIRKCIKFVSTINRP----NLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSR 325
+ +P N+ ++ + S K + +I++ G+V+ +
Sbjct: 191 QTENTPVMLEVTAKPEELTNVEHLYMDVESRDKATLLRRISHIKDM-----RGLVFVKDK 245
Query: 326 KECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVR 385
E + ++L + A H ++ R+K + K L ++ T G++ D+
Sbjct: 246 PRMEILLEKLHYDKVKAAGIHGEIRKEKRKKYLDDFKKGTLTYLIVTDVAARGLDIEDLP 305
Query: 386 FVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADV 424
+VIH+ L+ S + Y SGR GR G + F P ++
Sbjct: 306 YVIHYDLAASEKEYTHRSGRTGRMGKSGTVITFANPREI 344
>UNIPROTKB|Q0C4B9 [details] [associations]
symbol:HNE_0695 "Putative ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:YP_759424.1 ProteinModelPortal:Q0C4B9 STRING:Q0C4B9
GeneID:4287361 KEGG:hne:HNE_0695 PATRIC:32214196 OMA:LPMITIL
BioCyc:HNEP228405:GI69-738-MONOMER Uniprot:Q0C4B9
Length = 536
Score = 162 (62.1 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 82/344 (23%), Positives = 141/344 (40%)
Query: 96 QQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMCLAALG 155
Q+E I +L G DV + G GK+ + LP + R + + + ++C
Sbjct: 31 QREAIPHILMGGDVTGVAQTGTGKTAAFVLPMIQRLSTGRARARMPRCL---ILC----- 82
Query: 156 IPAHMLTSTTSKEDEKF-----IYKALEKG-----EGELKMLYVTPEKISKSKRFMSKLE 205
P L + ++ EK+ + AL G E E + I+ R M + +
Sbjct: 83 -PTRELAAQVAENFEKYGKYLKLTMALLIGGVSFKEQETLLQRGVDVLIATPGRLMDQFD 141
Query: 206 --KCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNL-GILKTQFPDVPMMALTATATQKVQ 262
K G +LI IDEA G F PD + + L + A T Q++
Sbjct: 142 RGKLLMMGVETLI-IDEADRMLDMG--FIPDIEKICAKLPANRQTLLFSATFPTDIQRLA 198
Query: 263 NDLME---MLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGI 319
+ + + + + TI++ ++V+ ++ GK + + I+ + N ++GI
Sbjct: 199 KTFQKDPKKIEVTRPAQTAETISQ----FVVKLPTNDGKARRTALRRVIEAT--NVKNGI 252
Query: 320 VYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGI 379
V+C + E + VA L + G A H D+ + R + R+ KL+++V + G+
Sbjct: 253 VFCNRKVEVDIVAASLTKHGHDAAPIHGDLPQSVRSETLQRFRDGKLKLLVASDVAARGL 312
Query: 380 NKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPAD 423
+ PDV V + E Y GR GR G E PAD
Sbjct: 313 DIPDVGHVFNFGPPPKDEDYVHRIGRTGRAGRTGESYTVVTPAD 356
>UNIPROTKB|P54824 [details] [associations]
symbol:ddx6 "ATP-dependent RNA helicase ddx6" species:8355
"Xenopus laevis" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003723
GO:GO:0030529 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG106685 CTD:1656 EMBL:X92421 EMBL:BC170228 EMBL:BC170230
RefSeq:NP_001083721.1 UniGene:Xl.157 IntAct:P54824 PRIDE:P54824
GeneID:399080 KEGG:xla:399080 Xenbase:XB-GENE-922237 Uniprot:P54824
Length = 481
Score = 161 (61.7 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 85/332 (25%), Positives = 148/332 (44%)
Query: 96 QQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGI------ALVVSPLLSL-IQDQV 148
Q+E I LSGRD+L G GKS Y +P + R + A+V+ P L +Q
Sbjct: 122 QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDCIQAMVIVPTRELALQVSQ 181
Query: 149 MCLAALGIPAHM----LTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKI-SKSKRFMSK 203
+C+ + HM + +TT + + + + + + ++ TP +I K+ ++K
Sbjct: 182 ICIQ---VSKHMGGAKVMATTGGTN---LRDDIMRLDDTVHVVIATPGRILDLIKKGVAK 235
Query: 204 LEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQN 263
++ H + +I +DEA DF ++ I+ T + ++ +AT VQ
Sbjct: 236 VD---H---IQMIVLDEAD--KLLSQDFMQIMED--IIMTLPKNRQILLYSATFPLSVQK 285
Query: 264 DLMEMLHIRKC--IKFVS--TINRPNLFYM-VREKSSVGKVVIDEIAKYIQESYPNSESG 318
+ LH++K I + T+ +Y V E+ V ++ + +Q +
Sbjct: 286 FMT--LHLQKPYEINLMEELTLKGVTQYYAYVTERQKVH--CLNTLFSRLQIN-----QS 336
Query: 319 IVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMG 378
I++C S + E +A+++ Q G S Y HA M R +V + + +V T F G
Sbjct: 337 IIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRG 396
Query: 379 INKPDVRFVIHHSLSKSVETYYQESGRAGRDG 410
I+ V VI+ K ETY GR+GR G
Sbjct: 397 IDIQAVNVVINFDFPKLAETYLHRIGRSGRFG 428
>UNIPROTKB|A7E307 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
CTD:10521 HOVERGEN:HBG015893 KO:K13178 OrthoDB:EOG4QRH3N
GO:GO:0072358 EMBL:DAAA02014661 EMBL:DAAA02014662 EMBL:BC151648
IPI:IPI00914517 RefSeq:NP_001095463.1 UniGene:Bt.91623
Ensembl:ENSBTAT00000037682 GeneID:514323 KEGG:bta:514323
InParanoid:A7E307 OMA:QQFPQPP NextBio:20871275 Uniprot:A7E307
Length = 650
Score = 163 (62.4 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 85/346 (24%), Positives = 142/346 (41%)
Query: 104 LSGRDVLVIMAAGGGKSLCYQLPAV--------LREG---IALVVSPLLSLIQDQVMCLA 152
LSGRD++ I G GK+L Y LPA+ L G I LV++P L Q QV +A
Sbjct: 127 LSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQ-QVQQVA 185
Query: 153 ALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEK-ISKSKRFMSKLEKCH-HA 210
L ST IY KG +++ L E I+ R + LE +
Sbjct: 186 DDYGKCSRLKSTC-------IYGGAPKGP-QIRDLERGVEICIATPGRLIDFLESGKTNL 237
Query: 211 GRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLH 270
R + + +DEA G F P + I+ PD + +AT ++V+ + L
Sbjct: 238 RRCTYLVLDEADRMLDMG--FEPQIRK--IVDQIRPDRQTLMWSATWPKEVRQLAEDFLR 293
Query: 271 IRKCIKF--VSTINRPNLFYMV---REKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSR 325
I + N+ +V E K++ ++ + I N I++ ++
Sbjct: 294 DYTQINVGNLELSANHNILQIVDVCMESEKDHKLI--QLMEEIMAEKENKT--IIFVETK 349
Query: 326 KECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVR 385
+ C+ + + +R+ G A H D R+ V + K +++ T G++ DV+
Sbjct: 350 RRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVK 409
Query: 386 FVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMV 431
FVI++ S E Y GR R FF P ++ + ++
Sbjct: 410 FVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELI 455
>UNIPROTKB|E2RJ60 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AAEX03007314
Ensembl:ENSCAFT00000037931 Uniprot:E2RJ60
Length = 650
Score = 163 (62.4 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 85/346 (24%), Positives = 142/346 (41%)
Query: 104 LSGRDVLVIMAAGGGKSLCYQLPAV--------LREG---IALVVSPLLSLIQDQVMCLA 152
LSGRD++ I G GK+L Y LPA+ L G I LV++P L Q QV +A
Sbjct: 127 LSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQ-QVQQVA 185
Query: 153 ALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEK-ISKSKRFMSKLEKCH-HA 210
L ST IY KG +++ L E I+ R + LE +
Sbjct: 186 DDYGKCSRLKSTC-------IYGGAPKGP-QIRDLERGVEICIATPGRLIDFLESGKTNL 237
Query: 211 GRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLH 270
R + + +DEA G F P + I+ PD + +AT ++V+ + L
Sbjct: 238 RRCTYLVLDEADRMLDMG--FEPQIRK--IVDQIRPDRQTLMWSATWPKEVRQLAEDFLR 293
Query: 271 IRKCIKF--VSTINRPNLFYMV---REKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSR 325
I + N+ +V E K++ ++ + I N I++ ++
Sbjct: 294 DYTQINVGNLELSANHNILQIVDVCMESEKDHKLI--QLMEEIMAEKENKT--IIFVETK 349
Query: 326 KECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVR 385
+ C+ + + +R+ G A H D R+ V + K +++ T G++ DV+
Sbjct: 350 RRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVK 409
Query: 386 FVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMV 431
FVI++ S E Y GR R FF P ++ + ++
Sbjct: 410 FVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELI 455
>MGI|MGI:1914290 [details] [associations]
symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 17"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0030331 "estrogen receptor binding"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0072358 "cardiovascular system
development" evidence=IMP] [GO:2001014 "regulation of skeletal
muscle cell differentiation" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914290
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0045944
GO:GO:0006351 GO:GO:0003723 GO:GO:0003713 GO:GO:0009791
GO:GO:0033148 GO:GO:0030331 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:10521 HOVERGEN:HBG015893 KO:K13178
ChiTaRS:DDX17 GO:GO:2001014 EMBL:AK039888 EMBL:BC062910
EMBL:BC096036 IPI:IPI00396797 IPI:IPI00405364 RefSeq:NP_001035277.1
RefSeq:NP_951061.1 RefSeq:NP_951062.1 UniGene:Mm.29644
UniGene:Mm.298199 ProteinModelPortal:Q501J6 SMR:Q501J6
IntAct:Q501J6 STRING:Q501J6 PhosphoSite:Q501J6
REPRODUCTION-2DPAGE:IPI00405364 PaxDb:Q501J6 PRIDE:Q501J6
GeneID:67040 KEGG:mmu:67040 UCSC:uc007wtq.1 UCSC:uc007wtt.1
InParanoid:Q501J6 OrthoDB:EOG4QRH3N NextBio:323386 Bgee:Q501J6
CleanEx:MM_DDX17 Genevestigator:Q501J6
GermOnline:ENSMUSG00000055065 GO:GO:0072358 Uniprot:Q501J6
Length = 650
Score = 163 (62.4 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 85/346 (24%), Positives = 142/346 (41%)
Query: 104 LSGRDVLVIMAAGGGKSLCYQLPAV--------LREG---IALVVSPLLSLIQDQVMCLA 152
LSGRD++ I G GK+L Y LPA+ L G I LV++P L Q QV +A
Sbjct: 127 LSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQ-QVQQVA 185
Query: 153 ALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEK-ISKSKRFMSKLEKCH-HA 210
L ST IY KG +++ L E I+ R + LE +
Sbjct: 186 DDYGKCSRLKSTC-------IYGGAPKGP-QIRDLERGVEICIATPGRLIDFLESGKTNL 237
Query: 211 GRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLH 270
R + + +DEA G F P + I+ PD + +AT ++V+ + L
Sbjct: 238 RRCTYLVLDEADRMLDMG--FEPQIRK--IVDQIRPDRQTLMWSATWPKEVRQLAEDFLR 293
Query: 271 IRKCIKF--VSTINRPNLFYMV---REKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSR 325
I + N+ +V E K++ ++ + I N I++ ++
Sbjct: 294 DYTQINVGNLELSANHNILQIVDVCMESEKDHKLI--QLMEEIMAEKENKT--IIFVETK 349
Query: 326 KECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVR 385
+ C+ + + +R+ G A H D R+ V + K +++ T G++ DV+
Sbjct: 350 RRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVK 409
Query: 386 FVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMV 431
FVI++ S E Y GR R FF P ++ + ++
Sbjct: 410 FVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELI 455
>UNIPROTKB|C9JMU5 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 EMBL:Z97056 IPI:IPI01022339
HGNC:HGNC:2740 ChiTaRS:DDX17 ProteinModelPortal:C9JMU5 SMR:C9JMU5
STRING:C9JMU5 PRIDE:C9JMU5 Ensembl:ENST00000381633
ArrayExpress:C9JMU5 Bgee:C9JMU5 Uniprot:C9JMU5
Length = 652
Score = 163 (62.4 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 88/348 (25%), Positives = 145/348 (41%)
Query: 104 LSGRDVLVIMAAGGGKSLCYQLPAV--------LREG---IALVVSPLLSLIQDQVMCLA 152
LSGRD++ I G GK+L Y LPA+ L G I LV++P L Q QV +A
Sbjct: 127 LSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQ-QVQQVA 185
Query: 153 ALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEK-ISKSKRFMSKLEKCH-HA 210
L ST IY KG +++ L E I+ R + LE +
Sbjct: 186 DDYGKCSRLKSTC-------IYGGAPKGP-QIRDLERGVEICIATPGRLIDFLESGKTNL 237
Query: 211 GRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLH 270
R + + +DEA G F P + I+ PD + +AT ++V+ + L
Sbjct: 238 RRCTYLVLDEADRMLDMG--FEPQIRK--IVDQIRPDRQTLMWSATWPKEVRQLAEDFLR 293
Query: 271 IRKCIKF--VSTINRPNLFYMV---REKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSR 325
I + N+ +V E K++ ++ + I N I++ ++
Sbjct: 294 DYTQINVGNLELSANHNILQIVDVCMESEKDHKLI--QLMEEIMAEKENKT--IIFVETK 349
Query: 326 KECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGT-VAF-GMGINKPD 383
+ C+ + + +R+ G A H D R+ V + K +++ T VA G+G + D
Sbjct: 350 RRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLGFDVED 409
Query: 384 VRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMV 431
V+FVI++ S E Y GR R FF P ++ + ++
Sbjct: 410 VKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELI 457
>UNIPROTKB|Q2NL22 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0000184
GO:GO:0008380 GO:GO:0017148 GO:GO:0016607 GO:GO:0006397
GO:GO:0045727 GO:GO:0051028 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
GO:GO:0035145 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 KO:K13025 EMBL:BC111184
IPI:IPI00708766 RefSeq:NP_001039653.1 UniGene:Bt.3377
ProteinModelPortal:Q2NL22 SMR:Q2NL22 PRIDE:Q2NL22
Ensembl:ENSBTAT00000021327 GeneID:515145 KEGG:bta:515145 CTD:9775
InParanoid:Q2NL22 OMA:LALGDFM OrthoDB:EOG4229JV NextBio:20871682
Uniprot:Q2NL22
Length = 411
Score = 131 (51.2 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 23/106 (21%), Positives = 53/106 (50%)
Query: 319 IVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMG 378
+++C ++++ + + +++R+ + H DM RE + + +V++ T + G
Sbjct: 281 VIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARG 340
Query: 379 INKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADV 424
++ P V +I++ L + E Y GR+GR G + F + D+
Sbjct: 341 LDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDI 386
Score = 75 (31.5 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 25/85 (29%), Positives = 40/85 (47%)
Query: 78 RADDVR-LNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAV------LR 130
R D +R + +G A QQ I ++ GRDV+ +G GK+ + + + +R
Sbjct: 46 REDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVR 105
Query: 131 EGIALVVSPLLSLIQDQVMCLAALG 155
E AL+++P L L ALG
Sbjct: 106 ETQALILAPTRELAVQIQKGLLALG 130
>UNIPROTKB|E2RDZ4 [details] [associations]
symbol:EIF4A3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0017148
"negative regulation of translation" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0045727 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0035145 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143
GeneTree:ENSGT00530000062880 KO:K13025 OMA:EDWKFDT CTD:9775
EMBL:AAEX03006203 RefSeq:XP_533130.2 Ensembl:ENSCAFT00000009055
GeneID:475922 KEGG:cfa:475922 NextBio:20851666 Uniprot:E2RDZ4
Length = 411
Score = 131 (51.2 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 23/106 (21%), Positives = 53/106 (50%)
Query: 319 IVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMG 378
+++C ++++ + + +++R+ + H DM RE + + +V++ T + G
Sbjct: 281 VIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARG 340
Query: 379 INKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADV 424
++ P V +I++ L + E Y GR+GR G + F + D+
Sbjct: 341 LDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDI 386
Score = 75 (31.5 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 25/85 (29%), Positives = 40/85 (47%)
Query: 78 RADDVR-LNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAV------LR 130
R D +R + +G A QQ I ++ GRDV+ +G GK+ + + + +R
Sbjct: 46 REDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVR 105
Query: 131 EGIALVVSPLLSLIQDQVMCLAALG 155
E AL+++P L L ALG
Sbjct: 106 ETQALILAPTRELAVQIQKGLLALG 130
>UNIPROTKB|P38919 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9606 "Homo sapiens" [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0045727 "positive regulation
of translation" evidence=IMP] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0035145 "exon-exon junction complex"
evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IMP;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0017148 "negative
regulation of translation" evidence=IDA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0019221
"cytokine-mediated signaling pathway" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005829
GO:GO:0005524 Reactome:REACT_6900 GO:GO:0000184 GO:GO:0017148
GO:GO:0016607 GO:GO:0019221 TCDB:3.A.18.1.1 EMBL:CH471099
GO:GO:0045727 GO:GO:0051028 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0000289 EMBL:AC087741 GO:GO:0035145 PDB:2HYI
PDB:2J0Q PDB:2J0S PDB:2J0U PDB:2XB2 PDB:3EX7 PDBsum:2HYI
PDBsum:2J0Q PDBsum:2J0S PDBsum:2J0U PDBsum:2XB2 PDBsum:3EX7
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0008143 HOVERGEN:HBG107989 KO:K13025
OMA:EDWKFDT CTD:9775 OrthoDB:EOG4229JV EMBL:X79538 EMBL:D21853
EMBL:AK290608 EMBL:CR456750 EMBL:BC003662 EMBL:BC004386
EMBL:BC011151 IPI:IPI00009328 PIR:S45142 RefSeq:NP_055555.1
UniGene:Hs.389649 PDB:2HXY PDBsum:2HXY ProteinModelPortal:P38919
SMR:P38919 DIP:DIP-33218N IntAct:P38919 MINT:MINT-1460615
STRING:P38919 PhosphoSite:P38919 DMDM:20532400
REPRODUCTION-2DPAGE:IPI00009328 PaxDb:P38919 PeptideAtlas:P38919
PRIDE:P38919 DNASU:9775 Ensembl:ENST00000269349 GeneID:9775
KEGG:hsa:9775 UCSC:uc002jxs.3 GeneCards:GC17M078109 HGNC:HGNC:18683
HPA:HPA021878 MIM:608546 neXtProt:NX_P38919 PharmGKB:PA162384945
InParanoid:P38919 PhylomeDB:P38919 ChiTaRS:EIF4A3
EvolutionaryTrace:P38919 GenomeRNAi:9775 NextBio:36802 Bgee:P38919
CleanEx:HS_EIF4A3 Genevestigator:P38919 GermOnline:ENSG00000141543
Uniprot:P38919
Length = 411
Score = 131 (51.2 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 23/106 (21%), Positives = 53/106 (50%)
Query: 319 IVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMG 378
+++C ++++ + + +++R+ + H DM RE + + +V++ T + G
Sbjct: 281 VIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARG 340
Query: 379 INKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADV 424
++ P V +I++ L + E Y GR+GR G + F + D+
Sbjct: 341 LDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDI 386
Score = 75 (31.5 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 25/85 (29%), Positives = 40/85 (47%)
Query: 78 RADDVR-LNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAV------LR 130
R D +R + +G A QQ I ++ GRDV+ +G GK+ + + + +R
Sbjct: 46 REDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVR 105
Query: 131 EGIALVVSPLLSLIQDQVMCLAALG 155
E AL+++P L L ALG
Sbjct: 106 ETQALILAPTRELAVQIQKGLLALG 130
>UNIPROTKB|A6M931 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 KO:K13025 CTD:9775
OrthoDB:EOG4229JV EMBL:DQ351286 RefSeq:NP_001093663.1
UniGene:Ssc.869 ProteinModelPortal:A6M931 SMR:A6M931 PRIDE:A6M931
GeneID:100101926 KEGG:ssc:100101926 Uniprot:A6M931
Length = 411
Score = 131 (51.2 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 23/106 (21%), Positives = 53/106 (50%)
Query: 319 IVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMG 378
+++C ++++ + + +++R+ + H DM RE + + +V++ T + G
Sbjct: 281 VIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARG 340
Query: 379 INKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADV 424
++ P V +I++ L + E Y GR+GR G + F + D+
Sbjct: 341 LDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDI 386
Score = 75 (31.5 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 25/85 (29%), Positives = 40/85 (47%)
Query: 78 RADDVR-LNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAV------LR 130
R D +R + +G A QQ I ++ GRDV+ +G GK+ + + + +R
Sbjct: 46 REDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVR 105
Query: 131 EGIALVVSPLLSLIQDQVMCLAALG 155
E AL+++P L L ALG
Sbjct: 106 ETQALILAPTRELAVQIQKGLLALG 130
>RGD|1591139 [details] [associations]
symbol:Eif4a3 "eukaryotic translation initiation factor 4A,
isoform 3" species:10116 "Rattus norvegicus" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1591139 GO:GO:0005524
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
EMBL:CH473948 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P60842 KO:K13025 CTD:9775 EMBL:BC105875
IPI:IPI00656385 RefSeq:NP_001093628.1 UniGene:Rn.202617
ProteinModelPortal:Q3B8Q2 SMR:Q3B8Q2 PRIDE:Q3B8Q2 GeneID:688288
KEGG:rno:688288 NextBio:736113 Genevestigator:Q3B8Q2 Uniprot:Q3B8Q2
Length = 411
Score = 131 (51.2 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 23/106 (21%), Positives = 53/106 (50%)
Query: 319 IVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMG 378
+++C ++++ + + +++R+ + H DM RE + + +V++ T + G
Sbjct: 281 VIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARG 340
Query: 379 INKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADV 424
++ P V +I++ L + E Y GR+GR G + F + D+
Sbjct: 341 LDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDI 386
Score = 75 (31.5 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 25/85 (29%), Positives = 40/85 (47%)
Query: 78 RADDVR-LNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAV------LR 130
R D +R + +G A QQ I ++ GRDV+ +G GK+ + + + +R
Sbjct: 46 REDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVR 105
Query: 131 EGIALVVSPLLSLIQDQVMCLAALG 155
E AL+++P L L ALG
Sbjct: 106 ETQALILAPTRELAVQIQKGLLALG 130
>UNIPROTKB|Q5ZM36 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0006417 GO:GO:0000184 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0051028 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025 CTD:9775
OrthoDB:EOG4229JV EMBL:AJ719548 IPI:IPI00588271
RefSeq:NP_001025820.1 UniGene:Gga.7844 ProteinModelPortal:Q5ZM36
SMR:Q5ZM36 PRIDE:Q5ZM36 GeneID:416704 KEGG:gga:416704
InParanoid:Q5ZM36 NextBio:20820126 Uniprot:Q5ZM36
Length = 412
Score = 131 (51.2 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 23/106 (21%), Positives = 53/106 (50%)
Query: 319 IVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMG 378
+++C ++++ + + +++R+ + H DM RE + + +V++ T + G
Sbjct: 282 VIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARG 341
Query: 379 INKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADV 424
++ P V +I++ L + E Y GR+GR G + F + D+
Sbjct: 342 LDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDI 387
Score = 75 (31.5 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 25/85 (29%), Positives = 40/85 (47%)
Query: 78 RADDVR-LNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAV------LR 130
R D +R + +G A QQ I ++ GRDV+ +G GK+ + + + +R
Sbjct: 47 REDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVR 106
Query: 131 EGIALVVSPLLSLIQDQVMCLAALG 155
E AL+++P L L ALG
Sbjct: 107 ETQALILAPTRELAVQIQKGLLALG 131
>WB|WBGene00010260 [details] [associations]
symbol:F58E10.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:Z81555 PIR:T22917
RefSeq:NP_001041134.1 ProteinModelPortal:Q9XUW5 SMR:Q9XUW5
STRING:Q9XUW5 PaxDb:Q9XUW5 PRIDE:Q9XUW5 EnsemblMetazoa:F58E10.3a.1
EnsemblMetazoa:F58E10.3a.2 EnsemblMetazoa:F58E10.3a.3
EnsemblMetazoa:F58E10.3a.4 EnsemblMetazoa:F58E10.3a.5 GeneID:179897
KEGG:cel:CELE_F58E10.3 UCSC:F58E10.3a.1 CTD:179897
WormBase:F58E10.3a InParanoid:Q9XUW5 OMA:YVLQEIT NextBio:907314
ArrayExpress:Q9XUW5 Uniprot:Q9XUW5
Length = 561
Score = 162 (62.1 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 76/351 (21%), Positives = 153/351 (43%)
Query: 104 LSGRDVLVIMAAGGGKSLCYQLPAVLR----------EGIA-LVVSPLLSLIQD-QVMCL 151
+SGRD++ I G GK+L + LPA++ EG A LV+ P L Q Q + +
Sbjct: 164 MSGRDIISIAKTGSGKTLAFMLPALVHITKQAHRQRGEGPAVLVLLPTRELAQQVQEVSI 223
Query: 152 A---ALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKS-KRFMSKLEKC 207
+LG+ L SK + + LE+G + ++ TP ++ + ++KC
Sbjct: 224 DFCHSLGLKMTCLFGGASKGPQA---RDLERG---VDIVVATPGRLLDFLDNGTTNMKKC 277
Query: 208 HHAGRLSLISIDEAHCCSQWGHDFRPDYKNL-GILKTQFPDVPMMALTATATQKVQ---N 263
S + +DEA G F P K + G ++ PD + +AT ++V+ +
Sbjct: 278 ------SYLVLDEADRMLDMG--FEPQIKKIIGQIR---PDRQTLMFSATWPKEVRALAS 326
Query: 264 DLME---MLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIV 320
D + L++ ++ + N + ++ E + K++ E+ +I I+
Sbjct: 327 DFQKDAAFLNVGS-LELAANHNITQVVDILEEHAKQAKLM--ELLNHIMNQ--KECKTII 381
Query: 321 YCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGIN 380
+ ++++ +++ + +R+ G H D + R+ V + K +++ T G++
Sbjct: 382 FVETKRKADELTRAMRRDGWPTLCIHGDKNQGERDWVLQEFKAGKTPIMLATDVAARGLD 441
Query: 381 KPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMV 431
D++FVI++ + E Y GR GR FF + + ++
Sbjct: 442 VDDIKFVINYDYPNNSEDYVHRIGRTGRSDKKGTAYTFFTHTNASKAKDLL 492
>ZFIN|ZDB-GENE-990415-272 [details] [associations]
symbol:vasa "vasa homolog" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008406 "gonad development" evidence=IEP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-990415-272 GO:GO:0005524 GO:GO:0008406
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HSSP:Q58083 HOGENOM:HOG000268804 HOVERGEN:HBG015893 KO:K13982
EMBL:AB005147 IPI:IPI00495861 RefSeq:NP_571132.1 UniGene:Dr.559
ProteinModelPortal:O42107 SMR:O42107 STRING:O42107 PRIDE:O42107
GeneID:30263 KEGG:dre:30263 CTD:30263 InParanoid:O42107
NextBio:20806710 ArrayExpress:O42107 Bgee:O42107 Uniprot:O42107
Length = 716
Score = 163 (62.4 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 83/379 (21%), Positives = 147/379 (38%)
Query: 72 TFEWDSRADDVRLNVF--GIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVL 129
TFE D + NV G Q+ I + +GRD++ G GK+ + LP +
Sbjct: 278 TFEEAGLCDSLSKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQ 337
Query: 130 REGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGE---GELKM 186
R V + S IQ+ + A P L + E KF Y + G +
Sbjct: 338 RFMTDGVAASKFSEIQEPEAIIVA---PTRELINQIYLEARKFAYGTCVRPVVVYGGINT 394
Query: 187 LYVTPEKISKSKRFMSKLEKCHHA---GRLSL-----ISIDEAHCCSQWGHDFRPDYKNL 238
Y E + + + H G++ L + +DEA G F P+ + L
Sbjct: 395 GYTIREVLKGCNVLCATPGRLHDLIGRGKIGLSKVRYLVLDEADRMLDMG--FEPEMRKL 452
Query: 239 GILKTQFP---DVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRP--NLFYMVREK 293
+ P + + +AT + +Q + L + V + ++ V +
Sbjct: 453 -VASPGMPSKEERQTLMFSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTVVQV 511
Query: 294 SSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINA 353
K D++ + ++ + +E +V+ +++ + +A L Q IS H D +
Sbjct: 512 DQYSKR--DQLLELLRAT--GNERTMVFVETKRSADFIATFLCQEKISTTSIHGDREQRE 567
Query: 354 REKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPS 413
REK + V+V T G++ V+ V++ + S++ Y GR GR G
Sbjct: 568 REKALSDFRLGHCPVLVATSVAARGLDIEQVQHVVNFDMPSSIDEYVHRIGRTGRCGNTG 627
Query: 414 ECLLFFRP-ADVPRQSSMV 431
+ FF P +D P S+V
Sbjct: 628 RAVSFFNPESDTPLARSLV 646
>UNIPROTKB|Q92841 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0033148 "positive
regulation of intracellular estrogen receptor signaling pathway"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0003724 "RNA helicase activity"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0008186 "RNA-dependent ATPase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005730
EMBL:CH471095 GO:GO:0045944 GO:GO:0006351 GO:GO:0003723
GO:GO:0006396 GO:GO:0003713 GO:GO:0033148 GO:GO:0030331
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 GO:GO:0008186 EMBL:U59321 EMBL:CR456432
EMBL:AL713763 EMBL:Z97056 EMBL:BC000595 IPI:IPI00651653
IPI:IPI00651677 IPI:IPI00889541 IPI:IPI01022339 PIR:S72367
RefSeq:NP_006377.2 UniGene:Hs.706116 UniGene:Hs.725500
ProteinModelPortal:Q92841 SMR:Q92841 DIP:DIP-29843N IntAct:Q92841
MINT:MINT-4545892 STRING:Q92841 PhosphoSite:Q92841 DMDM:3122595
REPRODUCTION-2DPAGE:IPI00023785 PaxDb:Q92841 PRIDE:Q92841
DNASU:10521 Ensembl:ENST00000403230 GeneID:10521 KEGG:hsa:10521
UCSC:uc003avx.4 CTD:10521 GeneCards:GC22M038879 HGNC:HGNC:2740
HPA:CAB024908 MIM:608469 neXtProt:NX_Q92841 PharmGKB:PA27206
HOVERGEN:HBG015893 InParanoid:Q92841 KO:K13178 ChiTaRS:DDX17
GenomeRNAi:10521 NextBio:39902 ArrayExpress:Q92841 Bgee:Q92841
CleanEx:HS_DDX17 Genevestigator:Q92841 GermOnline:ENSG00000100201
GO:GO:2001014 Uniprot:Q92841
Length = 729
Score = 163 (62.4 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 85/346 (24%), Positives = 142/346 (41%)
Query: 104 LSGRDVLVIMAAGGGKSLCYQLPAV--------LREG---IALVVSPLLSLIQDQVMCLA 152
LSGRD++ I G GK+L Y LPA+ L G I LV++P L Q QV +A
Sbjct: 206 LSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQ-QVQQVA 264
Query: 153 ALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEK-ISKSKRFMSKLEKCH-HA 210
L ST IY KG +++ L E I+ R + LE +
Sbjct: 265 DDYGKCSRLKSTC-------IYGGAPKGP-QIRDLERGVEICIATPGRLIDFLESGKTNL 316
Query: 211 GRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLH 270
R + + +DEA G F P + I+ PD + +AT ++V+ + L
Sbjct: 317 RRCTYLVLDEADRMLDMG--FEPQIRK--IVDQIRPDRQTLMWSATWPKEVRQLAEDFLR 372
Query: 271 IRKCIKF--VSTINRPNLFYMV---REKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSR 325
I + N+ +V E K++ ++ + I N I++ ++
Sbjct: 373 DYTQINVGNLELSANHNILQIVDVCMESEKDHKLI--QLMEEIMAEKENKT--IIFVETK 428
Query: 326 KECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVR 385
+ C+ + + +R+ G A H D R+ V + K +++ T G++ DV+
Sbjct: 429 RRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVK 488
Query: 386 FVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMV 431
FVI++ S E Y GR R FF P ++ + ++
Sbjct: 489 FVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELI 534
>UNIPROTKB|H3BLZ8 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IEA] [GO:0072358
"cardiovascular system development" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0009791
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:Z97056 HGNC:HGNC:2740
ChiTaRS:DDX17 GO:GO:0072358 ProteinModelPortal:H3BLZ8 SMR:H3BLZ8
Ensembl:ENST00000396821 Bgee:H3BLZ8 Uniprot:H3BLZ8
Length = 731
Score = 163 (62.4 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 85/346 (24%), Positives = 142/346 (41%)
Query: 104 LSGRDVLVIMAAGGGKSLCYQLPAV--------LREG---IALVVSPLLSLIQDQVMCLA 152
LSGRD++ I G GK+L Y LPA+ L G I LV++P L Q QV +A
Sbjct: 206 LSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQ-QVQQVA 264
Query: 153 ALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEK-ISKSKRFMSKLEKCH-HA 210
L ST IY KG +++ L E I+ R + LE +
Sbjct: 265 DDYGKCSRLKSTC-------IYGGAPKGP-QIRDLERGVEICIATPGRLIDFLESGKTNL 316
Query: 211 GRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLH 270
R + + +DEA G F P + I+ PD + +AT ++V+ + L
Sbjct: 317 RRCTYLVLDEADRMLDMG--FEPQIRK--IVDQIRPDRQTLMWSATWPKEVRQLAEDFLR 372
Query: 271 IRKCIKF--VSTINRPNLFYMV---REKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSR 325
I + N+ +V E K++ ++ + I N I++ ++
Sbjct: 373 DYTQINVGNLELSANHNILQIVDVCMESEKDHKLI--QLMEEIMAEKENKT--IIFVETK 428
Query: 326 KECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVR 385
+ C+ + + +R+ G A H D R+ V + K +++ T G++ DV+
Sbjct: 429 RRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVK 488
Query: 386 FVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMV 431
FVI++ S E Y GR R FF P ++ + ++
Sbjct: 489 FVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELI 534
>UNIPROTKB|F1PID8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:QQFPQPP EMBL:AAEX03007314
Ensembl:ENSCAFT00000002162 Uniprot:F1PID8
Length = 736
Score = 163 (62.4 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 85/346 (24%), Positives = 142/346 (41%)
Query: 104 LSGRDVLVIMAAGGGKSLCYQLPAV--------LREG---IALVVSPLLSLIQDQVMCLA 152
LSGRD++ I G GK+L Y LPA+ L G I LV++P L Q QV +A
Sbjct: 208 LSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQ-QVQQVA 266
Query: 153 ALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEK-ISKSKRFMSKLEKCH-HA 210
L ST IY KG +++ L E I+ R + LE +
Sbjct: 267 DDYGKCSRLKSTC-------IYGGAPKGP-QIRDLERGVEICIATPGRLIDFLESGKTNL 318
Query: 211 GRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLH 270
R + + +DEA G F P + I+ PD + +AT ++V+ + L
Sbjct: 319 RRCTYLVLDEADRMLDMG--FEPQIRK--IVDQIRPDRQTLMWSATWPKEVRQLAEDFLR 374
Query: 271 IRKCIKF--VSTINRPNLFYMV---REKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSR 325
I + N+ +V E K++ ++ + I N I++ ++
Sbjct: 375 DYTQINVGNLELSANHNILQIVDVCMESEKDHKLI--QLMEEIMAEKENKT--IIFVETK 430
Query: 326 KECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVR 385
+ C+ + + +R+ G A H D R+ V + K +++ T G++ DV+
Sbjct: 431 RRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVK 490
Query: 386 FVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMV 431
FVI++ S E Y GR R FF P ++ + ++
Sbjct: 491 FVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELI 536
>UNIPROTKB|F1SKQ0 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 OMA:QQFPQPP
EMBL:FP102457 Ensembl:ENSSSCT00000000110 Uniprot:F1SKQ0
Length = 736
Score = 163 (62.4 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 85/346 (24%), Positives = 142/346 (41%)
Query: 104 LSGRDVLVIMAAGGGKSLCYQLPAV--------LREG---IALVVSPLLSLIQDQVMCLA 152
LSGRD++ I G GK+L Y LPA+ L G I LV++P L Q QV +A
Sbjct: 208 LSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQ-QVQQVA 266
Query: 153 ALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEK-ISKSKRFMSKLEKCH-HA 210
L ST IY KG +++ L E I+ R + LE +
Sbjct: 267 DDYGKCSRLKSTC-------IYGGAPKGP-QIRDLERGVEICIATPGRLIDFLESGKTNL 318
Query: 211 GRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLH 270
R + + +DEA G F P + I+ PD + +AT ++V+ + L
Sbjct: 319 RRCTYLVLDEADRMLDMG--FEPQIRK--IVDQIRPDRQTLMWSATWPKEVRQLAEDFLR 374
Query: 271 IRKCIKF--VSTINRPNLFYMV---REKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSR 325
I + N+ +V E K++ ++ + I N I++ ++
Sbjct: 375 DYTQINVGNLELSANHNILQIVDVCMESEKDHKLI--QLMEEIMAEKENKT--IIFVETK 430
Query: 326 KECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVR 385
+ C+ + + +R+ G A H D R+ V + K +++ T G++ DV+
Sbjct: 431 RRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVK 490
Query: 386 FVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMV 431
FVI++ S E Y GR R FF P ++ + ++
Sbjct: 491 FVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELI 536
>UNIPROTKB|P0A9P6 [details] [associations]
symbol:deaD "DeaD, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030684 "preribosome" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0006401 "RNA catabolic
process" evidence=IGI] [GO:0003724 "RNA helicase activity"
evidence=IDA] [GO:0070417 "cellular response to cold"
evidence=IEP;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021046 Pfam:PF00270 Pfam:PF00271 Pfam:PF12343
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0006401
GO:GO:0070417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 EMBL:M63288 EMBL:U03750 PIR:F65106 RefSeq:NP_417631.2
RefSeq:YP_491349.1 ProteinModelPortal:P0A9P6 SMR:P0A9P6
DIP:DIP-35752N IntAct:P0A9P6 MINT:MINT-1219396 SWISS-2DPAGE:P0A9P6
PaxDb:P0A9P6 PRIDE:P0A9P6 EnsemblBacteria:EBESCT00000000679
EnsemblBacteria:EBESCT00000014242 GeneID:12933435 GeneID:947674
KEGG:ecj:Y75_p3084 KEGG:eco:b3162 PATRIC:32121742 EchoBASE:EB0211
EcoGene:EG10215 OMA:ILFMTPR ProtClustDB:PRK11634
BioCyc:EcoCyc:EG10215-MONOMER BioCyc:ECOL316407:JW5531-MONOMER
Genevestigator:P0A9P6 GO:GO:0030684 Uniprot:P0A9P6
Length = 629
Score = 162 (62.1 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 74/342 (21%), Positives = 146/342 (42%)
Query: 84 LNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSL 143
LN G Q E I +L+GRDVL + G GK+ + LP + L +L L
Sbjct: 21 LNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVL 80
Query: 144 IQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEG---ELKMLYVTPE-KISKSKR 199
+ + + A +T SK AL G+ +L+ L P+ + R
Sbjct: 81 APTRELAVQV----AEAMTDF-SKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGR 135
Query: 200 FMSKLEK-CHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMAL-TATA 257
+ L++ +LS + +DEA + G F D + + Q P+ AL +AT
Sbjct: 136 LLDHLKRGTLDLSKLSGLVLDEADEMLRMG--FIEDVETI---MAQIPEGHQTALFSATM 190
Query: 258 TQKVQNDLMEMLHIRKCIKFVSTIN-RPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSE 316
+ ++ + + ++ S++ RP++ + K + + ++++ + +
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKN--EALVRFLEAE--DFD 246
Query: 317 SGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFG 376
+ I++ ++ +VA+ L + G ++ + DM+ RE+ R +L +++ T
Sbjct: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306
Query: 377 MGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLF 418
G++ + V+++ + E+Y GR GR G LLF
Sbjct: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLF 348
>UNIPROTKB|A4QVP2 [details] [associations]
symbol:TIF1 "ATP-dependent RNA helicase eIF4A"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:CM001231 GO:GO:0043581 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K03257 OrthoDB:EOG4PG98F
RefSeq:XP_003711015.1 ProteinModelPortal:A4QVP2 SMR:A4QVP2
EnsemblFungi:MGG_04400T0 GeneID:2677872 KEGG:mgr:MGG_04400
Uniprot:A4QVP2
Length = 396
Score = 158 (60.7 bits), Expect = 3.4e-08, P = 3.4e-08
Identities = 80/364 (21%), Positives = 157/364 (43%)
Query: 74 EWDSRADDVR-LNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAV---- 128
E + +++ +R + +G A QQ I V+ G DV+ +G GK+ + + +
Sbjct: 27 EMNLKSELLRGIYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQKID 86
Query: 129 --LREGIALVVSPLLSLIQDQVMCLAALGIPAHM-LTSTTSKEDEKFIYKALEKGEGELK 185
+++ AL+++P L Q + A+G ++ + + KAL+ G +
Sbjct: 87 TNVKQCQALILAPTRELAQQIQKVVVAIGDFMNIECHACIGGTSVRDDMKALQDGP---Q 143
Query: 186 MLYVTPEKISK--SKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKT 243
++ TP ++ +RF+ K + G + + +DEA F ++ L
Sbjct: 144 VVVGTPGRVHDMIQRRFL-KTD-----G-MKMFVLDEAD--EMLSRGFTEQIYDIFQLLP 194
Query: 244 QFPDVPMMALTATATQKVQNDLMEMLH--IRKCIKFVS-TINRPNLFYMVREKSSVGKVV 300
Q V + L+AT Q V + + +R +K T+ FY+ EK K
Sbjct: 195 QSTQVVL--LSATMPQDVLEVTTKFMRDPVRILVKKDELTLEGIKQFYIAVEKEE-WK-- 249
Query: 301 IDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMR 360
+D ++ + E+ +++ +++C +R++ + + +L R + H DMD R+ +
Sbjct: 250 LDTLSD-LYETVTITQA-VIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQAQRDLIMKE 307
Query: 361 WSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFR 420
+ +V++ T GI+ V VI++ L + E Y GR GR G + F
Sbjct: 308 FRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVT 367
Query: 421 PADV 424
DV
Sbjct: 368 ADDV 371
>UNIPROTKB|Q8ECL2 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 131 (51.2 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 28/92 (30%), Positives = 49/92 (53%)
Query: 319 IVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMG 378
+++ ++ C +AQ+L +RGISA+ +H D AR +V + ++ V++ T G
Sbjct: 257 LIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVLIATDIAARG 316
Query: 379 INKPDVRFVIHHSLSKSVETYYQESGRAGRDG 410
I+ + VI+ L +S Y GR+GR G
Sbjct: 317 IDIDKLPVVINFDLPRSPADYMHRIGRSGRAG 348
Score = 74 (31.1 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 20/48 (41%), Positives = 24/48 (50%)
Query: 83 RLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR 130
RL G + Q I AVLSGRDVL G GK+ + LP + R
Sbjct: 23 RLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQR 70
>TIGR_CMR|SO_3125 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 131 (51.2 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 28/92 (30%), Positives = 49/92 (53%)
Query: 319 IVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMG 378
+++ ++ C +AQ+L +RGISA+ +H D AR +V + ++ V++ T G
Sbjct: 257 LIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVLIATDIAARG 316
Query: 379 INKPDVRFVIHHSLSKSVETYYQESGRAGRDG 410
I+ + VI+ L +S Y GR+GR G
Sbjct: 317 IDIDKLPVVINFDLPRSPADYMHRIGRSGRAG 348
Score = 74 (31.1 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 20/48 (41%), Positives = 24/48 (50%)
Query: 83 RLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR 130
RL G + Q I AVLSGRDVL G GK+ + LP + R
Sbjct: 23 RLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQR 70
>TIGR_CMR|VC_2564 [details] [associations]
symbol:VC_2564 "ATP-dependent RNA helicase DbpA"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
KO:K05591 ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
OMA:THEKSTI PIR:B82060 RefSeq:NP_232192.1 ProteinModelPortal:Q9KP15
DNASU:2615581 GeneID:2615581 KEGG:vch:VC2564 PATRIC:20084152
Uniprot:Q9KP15
Length = 460
Score = 159 (61.0 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 81/349 (23%), Positives = 146/349 (41%)
Query: 84 LNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGI------ALVV 137
L G Q + + A+L G+DV+ G GK+ + L + + ALV+
Sbjct: 19 LETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSNLNVKRFRVQALVL 78
Query: 138 SPLLSLIQDQVMC-LAALGIPAH---MLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEK 193
P L DQV + LG H +LT I +LE G +L TP +
Sbjct: 79 CPTRELA-DQVATDIRTLGRAIHNIKVLTLCGGMPMGPQI-GSLEHGA---HILVGTPGR 133
Query: 194 ISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMAL 253
I +SK ++ L+ + +DEA + G F+ + I+ + +
Sbjct: 134 ILDH---LSK-DRID-LSELNTLVLDEADRMLEMG--FQEALE--AIIAAAPAERQTLLF 184
Query: 254 TATATQKVQNDLMEMLHIRKCIKFVSTINRPNL---FYMVREKSSVGKVVIDEIAKYIQE 310
+AT ++ + IK +T + ++ FY V E S+ ++ + + Q
Sbjct: 185 SATYPASIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKV-EGSAARDEALETLLLHHQP 243
Query: 311 SYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIV 370
+ S +V+C +++E + VA L Q G S H DM+ R++ ++++ + ++V
Sbjct: 244 T-----SSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILV 298
Query: 371 GTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFF 419
T G++ ++ V ++ LS+ E + GR GR G FF
Sbjct: 299 ATDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFF 347
>TAIR|locus:2081061 [details] [associations]
symbol:AT3G06480 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005773
"vacuole" evidence=IDA] [GO:0006635 "fatty acid beta-oxidation"
evidence=RCA] [GO:0016558 "protein import into peroxisome matrix"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001202
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00397 PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS51194 SMART:SM00456 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0000184 GO:GO:0003723 EMBL:AC011623 Gene3D:2.20.70.10
SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 IPI:IPI00528334 RefSeq:NP_187299.1
UniGene:At.27592 ProteinModelPortal:Q9SQV1 SMR:Q9SQV1 PaxDb:Q9SQV1
PRIDE:Q9SQV1 EnsemblPlants:AT3G06480.1 GeneID:819825
KEGG:ath:AT3G06480 GeneFarm:1016 TAIR:At3g06480
HOGENOM:HOG000154116 InParanoid:Q9SQV1 OMA:GMRENSF PhylomeDB:Q9SQV1
ProtClustDB:CLSN2915418 Genevestigator:Q9SQV1 GermOnline:AT3G06480
Uniprot:Q9SQV1
Length = 1088
Score = 164 (62.8 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 84/356 (23%), Positives = 149/356 (41%)
Query: 88 GIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVL---------REG-IALVV 137
G P+ Q + L RD++ I G GK+L Y +PA + R G L++
Sbjct: 454 GFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSRNGPTVLIL 513
Query: 138 SP---LLSLIQDQVMCLAALG-IPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEK 193
+P L + IQD+ + I L K + K LE+G ++ TP +
Sbjct: 514 APTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQ---LKELERGAD---IVVATPGR 567
Query: 194 ISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMAL 253
++ M ++ ++SL+ +DEA G F P + I+ P +
Sbjct: 568 LNDILE-MKMID----FQQVSLLVLDEADRMLDMG--FEPQIRK--IVNEIPPRRQTLMY 618
Query: 254 TATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKV-VIDEIAKY--IQE 310
TAT ++V+ ++L + V +N + + K+ V V+ ++ K +++
Sbjct: 619 TATWPKEVRKIASDLL-----VNPVQ-VNIGRVDELAANKAITQYVEVVPQMEKERRLEQ 672
Query: 311 SYPNSESG---IVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQ 367
+ E G I++C +++ C+ +A+ + R A H D R+ V ++ K
Sbjct: 673 ILRSQERGSKVIIFCSTKRLCDHLARSVG-RHFGAVVIHGDKTQGERDWVLNQFRSGKSC 731
Query: 368 VIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPAD 423
V++ T G++ D+R VI++ VE Y GR GR G FF D
Sbjct: 732 VLIATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTEQD 787
>UNIPROTKB|P21693 [details] [associations]
symbol:dbpA species:83333 "Escherichia coli K-12"
[GO:0003724 "RNA helicase activity" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0033677 "DNA/RNA helicase
activity" evidence=IDA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0000027 "ribosomal large subunit assembly" evidence=IMP]
[GO:0034459 "ATP-dependent 3'-5' RNA helicase activity"
evidence=IDA] [GO:0019843 "rRNA binding" evidence=IDA] [GO:0043531
"ADP binding" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0043531
GO:GO:0019843 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:X52647 PIR:B64884 RefSeq:NP_415859.1 RefSeq:YP_489613.1
ProteinModelPortal:P21693 SMR:P21693 IntAct:P21693 PRIDE:P21693
EnsemblBacteria:EBESCT00000004879 EnsemblBacteria:EBESCT00000014318
GeneID:12933991 GeneID:947153 KEGG:ecj:Y75_p1320 KEGG:eco:b1343
PATRIC:32117966 EchoBASE:EB0206 EcoGene:EG10210
HOGENOM:HOG000268809 KO:K05591 OMA:HIDPARF ProtClustDB:PRK11776
BioCyc:EcoCyc:EG10210-MONOMER BioCyc:ECOL316407:JW1337-MONOMER
BioCyc:MetaCyc:EG10210-MONOMER Genevestigator:P21693 GO:GO:0034459
GO:GO:0033677 InterPro:IPR005580 Pfam:PF03880 Uniprot:P21693
Length = 457
Score = 140 (54.3 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 38/152 (25%), Positives = 71/152 (46%)
Query: 275 IKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQE 334
I+ ST P + E SS GK+ + + + + P+S +V+C ++K+C+ V
Sbjct: 205 IEIDSTDALPPIEQQFYETSSKGKIPL--LQRLLSLHQPSS--CVVFCNTKKDCQAVCDA 260
Query: 335 LRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSK 394
L + G SA H D++ R++ +R++ +V+V T G++ + V++ L+
Sbjct: 261 LNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAW 320
Query: 395 SVETYYQESGRAGRDGLPSECLLFFRPADVPR 426
E + GR R G + F P + R
Sbjct: 321 DPEVHVHRIGRTARAGNSGLAISFCAPEEAQR 352
Score = 65 (27.9 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 24/71 (33%), Positives = 33/71 (46%)
Query: 84 LNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCY------QLPAVLREGIALVV 137
LN G Q + A+L+G+DV V G GK+ + Q+ A L + ALV+
Sbjct: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVL 77
Query: 138 SPLLSLIQDQV 148
P L DQV
Sbjct: 78 CPTRELA-DQV 87
>UNIPROTKB|E1C8R1 [details] [associations]
symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00530000063986 KO:K12614 InterPro:IPR014014
PROSITE:PS51195 UniGene:Gga.2331 CTD:1656 EMBL:AADN02058042
EMBL:AADN02058043 IPI:IPI00818395 RefSeq:NP_001006319.2
PRIDE:E1C8R1 Ensembl:ENSGALT00000040594 GeneID:419783
KEGG:gga:419783 NextBio:20822787 ArrayExpress:E1C8R1 Uniprot:E1C8R1
Length = 483
Score = 159 (61.0 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 79/328 (24%), Positives = 146/328 (44%)
Query: 96 QQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR-----EGI-ALVVSPLLSL-IQDQV 148
Q+E I LSGRD+L G GKS Y +P + R + I A+V+ P L +Q
Sbjct: 123 QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQ 182
Query: 149 MCLAALGIPAHM----LTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKI-SKSKRFMSK 203
+C+ + HM + +TT + + + + + + ++ TP +I K+ ++K
Sbjct: 183 ICIQ---VSKHMGGAKVMATTGGTN---LRDDIMRLDDTVHVVIATPGRILDLIKKGVAK 236
Query: 204 LEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALT-ATATQKVQ 262
+E H + +I +DEA+ DF +++ + + + + + T + QK
Sbjct: 237 VE---H---VQMIVLDEAN--KLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFM 288
Query: 263 NDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYC 322
N ++ + ++ ++ + V E+ V ++ + +Q + I++C
Sbjct: 289 NSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVH--CLNTLFSRLQIN-----QSIIFC 341
Query: 323 FSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKP 382
S + E +A+++ Q G S Y HA M R +V + + +V T F GI+
Sbjct: 342 NSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQ 401
Query: 383 DVRFVIHHSLSKSVETYYQESGRAGRDG 410
V VI+ K ETY GR+GR G
Sbjct: 402 AVNVVINFDFPKLAETYLHRIGRSGRFG 429
>TAIR|locus:2119176 [details] [associations]
symbol:AT4G33370 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0046872 GO:GO:0008270 EMBL:AL035678 EMBL:AL161583
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13116 HOGENOM:HOG000268792 ProtClustDB:CLSN2685494
IPI:IPI00545227 PIR:T05988 RefSeq:NP_195063.1 UniGene:At.65448
ProteinModelPortal:Q9SZB4 SMR:Q9SZB4 PaxDb:Q9SZB4 PRIDE:Q9SZB4
EnsemblPlants:AT4G33370.1 GeneID:829474 KEGG:ath:AT4G33370
GeneFarm:1022 TAIR:At4g33370 InParanoid:Q9SZB4 OMA:MEETETI
PhylomeDB:Q9SZB4 Genevestigator:Q9SZB4 GermOnline:AT4G33370
Uniprot:Q9SZB4
Length = 542
Score = 156 (60.0 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 81/340 (23%), Positives = 146/340 (42%)
Query: 96 QQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR-------------EG-IALVVSPLL 141
Q + + VLSGRD++ I G GK+L + LP ++ EG IALV+ P
Sbjct: 124 QVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSR 183
Query: 142 SL-------IQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKI 194
L ++ V L G P D + ++KG + ++ TP ++
Sbjct: 184 ELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKG---VHIVVATPGRL 240
Query: 195 SK--SKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNL-GILKTQFPDVPMM 251
+K+ MS L+ C L+++DEA G F D +++ K+Q +
Sbjct: 241 KDILAKKKMS-LDACR------LLTLDEADRLVDLG--FEDDIRHVFDHFKSQRQT---L 288
Query: 252 ALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVV-IDEIAKYIQE 310
+AT K+Q L ++ V NL +++E V + I + + +Q+
Sbjct: 289 LFSATMPAKIQIFATSAL-VKPVTVNVGRAGAANLD-VIQEVEYVKQEAKIVYLLECLQK 346
Query: 311 SYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIV 370
+ P +++C ++ + + + + L +G+ A H D R+ + K V+V
Sbjct: 347 TTPPV---LIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLV 403
Query: 371 GTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDG 410
T G++ PD++ VI++ + +E Y GR GR G
Sbjct: 404 ATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCG 443
Score = 50 (22.7 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 10 LENVEAEVRLVQEQIKQLVDRQDQLYERQSELKSLLEAFEASRGSPIQYGGSSST 64
+E V E RL Q + K + + + E S+ K L+ E +RG I Y ST
Sbjct: 8 VEYVPVEERLAQMKRKVVEEPGKGMMEHLSDKKKLMSVGELARG--ITYTEPLST 60
>TIGR_CMR|CPS_1726 [details] [associations]
symbol:CPS_1726 "RNA helicase DeaD" species:167879
"Colwellia psychrerythraea 34H" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 RefSeq:YP_268464.1 ProteinModelPortal:Q484Q1
STRING:Q484Q1 GeneID:3523325 KEGG:cps:CPS_1726 PATRIC:21466621
OMA:WIVKGVE ProtClustDB:CLSK741103
BioCyc:CPSY167879:GI48-1803-MONOMER Uniprot:Q484Q1
Length = 611
Score = 160 (61.4 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 91/377 (24%), Positives = 167/377 (44%)
Query: 100 INAVLSGRDVLVIMAAGGGKSLCYQLPAV------LREGIALVVSPLLSLIQDQVMCLAA 153
I +L+G+DVL G GK+ + LPA+ +++ +V++P L + +
Sbjct: 46 IPPLLAGKDVLGEAQTGTGKTAAFGLPALAKIDTSIKKPQLMVLAPTRELAMQVAEAIES 105
Query: 154 LGIPAHMLTSTTSKEDEKF--IYKALEKGEGELKMLYVTPEKISKSKRFMS-KLEKCHHA 210
G L T + + ++ LE+G +++ TP ++ R S KL++
Sbjct: 106 FGKDMKGLRVATLYGGQSYGPQFQQLERGA---QVVVGTPGRLMDHLRRKSLKLDE---- 158
Query: 211 GRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMAL-TAT---ATQKVQND-L 265
L + +DEA G F D + IL P M L +AT A +K+ N L
Sbjct: 159 --LRVCVLDEADEMLNMG--FLEDIQ--WILD-HIPKTAQMCLFSATMPPAIRKIANRFL 211
Query: 266 MEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVV-IDEIAKYIQESYPNSESGIVYCFS 324
+ HI+ + V + N+ + S + K+ ++ IA+ ++ Y ++ I++ +
Sbjct: 212 KDPEHIK--VAAVKKA-KANITQYAWKVSGITKMTALERIAEVVE--Y---DAMIIFVRT 263
Query: 325 RKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDV 384
R + +A++L + G A + D++ RE+ + K ++V T G++ P +
Sbjct: 264 RNDTVDIAEKLERAGYPALALNGDLNQAQRERCIDQMKSGKSSILVATDVVARGLDIPRI 323
Query: 385 RFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFYENSGLQNLYDI 444
VI++ L E Y GR GR G + F RP ++ S+ YE L N +
Sbjct: 324 SLVINYDLPGDNEAYVHRIGRTGRAGREGMSIAFVRPREM---YSIRHYER--LTN-GTV 377
Query: 445 VRYSQYPLHWNIEKVRL 461
+ Y P +I K+R+
Sbjct: 378 LNYD-LPNIQDIGKIRI 393
>DICTYBASE|DDB_G0269192 [details] [associations]
symbol:tifA "eukaryotic translation initiation factor
4A" species:44689 "Dictyostelium discoideum" [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0269192 GO:GO:0005524 GO:GO:0005737
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
KO:K13025 OMA:LALGDFM RefSeq:XP_646270.1 ProteinModelPortal:Q55D61
SMR:Q55D61 PRIDE:Q55D61 EnsemblProtists:DDB0191511 GeneID:8617226
KEGG:ddi:DDB_G0269192 Uniprot:Q55D61
Length = 405
Score = 157 (60.3 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 80/365 (21%), Positives = 160/365 (43%)
Query: 72 TFEWDSRADDVRLNVF--GIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAV- 128
TFE +++ +F G A QQ I ++ GRD + +G GK+ + + A+
Sbjct: 33 TFESMGLREELLRGIFNYGFEKPSAIQQRAILPIIKGRDTIAQAQSGTGKTATFSIGALQ 92
Query: 129 -----LREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGE 183
+R L++SP L Q Q+ +A L + M + K + ++K E
Sbjct: 93 CVEVNVRSPQVLILSPTRELAQ-QIQKVA-LALSEFMNIQVHACVGGKNLSDDVKKLETG 150
Query: 184 LKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKT 243
+ ++ TP ++ K H + ++ +DEA G F+ + + +
Sbjct: 151 VHIVSGTPGRVLDM--ITRKSLPTRH---IKMMILDEADEMLSLG--FQ---QQINDVYR 200
Query: 244 QFPDVPMMAL-TATATQKVQNDLMEMLH--IRKCIKFVS-TINRPNLFYMVREKSSVGKV 299
P+ + L +AT TQ V + + + +R +K T++ F++ EK
Sbjct: 201 YLPNGTQIVLVSATLTQDVVSMTEKFMTKPVRILLKRDELTLDGIKQFFVSVEKEDWKFG 260
Query: 300 VIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHM 359
+ +I Y +S +++ +++C ++K+ +Q+ +++R + H DM RE++
Sbjct: 261 TLCDI--Y--DSLTITQA-VIFCNTKKKVDQLTEQMRDANFTVASMHGDMVQKEREEIIK 315
Query: 360 RWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFF 419
+ + +V++ T GI+ V VI++ L E Y GR+GR G + F
Sbjct: 316 SFRSGENRVLITTDILARGIDVQQVSLVINYDLPIDRENYIHRIGRSGRFGRKGVAINFV 375
Query: 420 RPADV 424
+ +D+
Sbjct: 376 KNSDI 380
>POMBASE|SPCC10H11.01 [details] [associations]
symbol:prp11 "ATP-dependent RNA helicase Prp11"
species:4896 "Schizosaccharomyces pombe" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC10H11.01 GO:GO:0005829 GO:GO:0005524
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0044732 GO:GO:0005681
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045292 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 EMBL:AB027964
RefSeq:NP_587856.1 ProteinModelPortal:Q9P7C7 DIP:DIP-59804N
IntAct:Q9P7C7 PRIDE:Q9P7C7 EnsemblFungi:SPCC10H11.01.1
GeneID:2538936 KEGG:spo:SPCC10H11.01 OMA:SLVIIYN OrthoDB:EOG40CMR1
NextBio:20800113 Uniprot:Q9P7C7
Length = 1014
Score = 143 (55.4 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 101/452 (22%), Positives = 178/452 (39%)
Query: 1 METEEILQEL---ENVEAEVRLVQEQIKQLVDRQDQLYERQSELKSLLEA-FEASRGS-- 54
+E EE L L + + +V V D + Y ELK+L A + R S
Sbjct: 345 LEEEENLLALAAKRSKKKDVITVDHSKINYEDFKKDFYVEPEELKNLSPAEVDELRASLD 404
Query: 55 PIQYGG-SSSTAVENWSGTFEWDSRADDVR-LNVFGIPAYRANQQEIINAVLSGRDVLVI 112
I+ G V +WS + A + +N G + Q + I A+ SGRDV+ +
Sbjct: 405 GIKIRGIDCPKPVTSWS---QCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGV 461
Query: 113 MAAGGGKSLCYQLPAV--------LREG---IALVVSPLLSL-IQDQVMC---LAALGIP 157
G GK++ + LP L+ G IA++++P L +Q C L L I
Sbjct: 462 AKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIR 521
Query: 158 AHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEK-ISKSKRFMSKLEKCHHAGRLSLI 216
A +D+ L++G +++ TP + I ++ H R + +
Sbjct: 522 ACCAYGGAPIKDQ---IADLKRGA---EIVVCTPGRMIDVLSANAGRVTNLH---RCTYL 572
Query: 217 SIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIK 276
+DEA G F P + I+ PD + +AT + ME L RK +K
Sbjct: 573 VLDEADRMFDLG--FEPQV--MRIINNIRPDRQTVLFSATFPRA-----MEAL-ARKVLK 622
Query: 277 FVSTINRPNLFYMVREKSSVGKVVIDE-----IAKYIQESYPNSES--GIVYCFSRKECE 329
I + E + +V +E + + + E Y N +V+ ++ +
Sbjct: 623 KPVEITVGGRSVVASEVEQIVEVRPEESKFSRLLELLGELYNNQLDVRTLVFVDRQESAD 682
Query: 330 QVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIH 389
+ +L +RG +++ H D + R+ + V++ T G++ ++ V++
Sbjct: 683 ALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYKAGVFDVLIATSVVARGLDVKSLQLVVN 742
Query: 390 HSLSKSVETYYQESGRAGRDGLPSECLLFFRP 421
+ +E Y GR GR G + F P
Sbjct: 743 YDCPNHMEDYVHRVGRTGRAGHTGVAVTFITP 774
Score = 70 (29.7 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 19/85 (22%), Positives = 43/85 (50%)
Query: 598 HSVLSSQLIRLISARKPSTMEEASSNHLEKI-IGKLKT--GKYGSRILEVISKCGNSEQQ 654
++V ++ +++ P ++ +S LEK+ GK K G +G + L + + N+E++
Sbjct: 779 YAVDIAKALKMSKQPVPKELQTLASQFLEKVKAGKEKAAGGGFGGKGLSRLDETRNAERK 838
Query: 655 HDNNAVSKEEQGRDARASKRTKKEK 679
A ++E+ + A ++ EK
Sbjct: 839 MQRKAYGEDEEDVETEAEAKSPLEK 863
>SGD|S000002319 [details] [associations]
symbol:DHH1 "Cytoplasmic DExD/H-box helicase, stimulates mRNA
decapping" species:4932 "Saccharomyces cerevisiae" [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=IMP] [GO:0003724 "RNA helicase activity" evidence=IGI;ISS]
[GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000002319 GO:GO:0005524
GO:GO:0006417 GO:GO:0006397 EMBL:BK006938 GO:GO:0003723
GO:GO:0000753 GO:GO:0000932 EMBL:Z67750 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0033962 GO:GO:0034063 GO:GO:0008026 eggNOG:COG0513
GeneTree:ENSGT00530000063986 HOGENOM:HOG000268797 KO:K12614
OMA:YSHARMK GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0000290 OrthoDB:EOG4QJVWF EMBL:X66057 EMBL:Z74208 PIR:S31229
RefSeq:NP_010121.1 PDB:1S2M PDBsum:1S2M ProteinModelPortal:P39517
SMR:P39517 DIP:DIP-1243N IntAct:P39517 MINT:MINT-385061
STRING:P39517 PaxDb:P39517 PeptideAtlas:P39517 EnsemblFungi:YDL160C
GeneID:851394 KEGG:sce:YDL160C CYGD:YDL160c
EvolutionaryTrace:P39517 NextBio:968552 Genevestigator:P39517
GermOnline:YDL160C Uniprot:P39517
Length = 506
Score = 158 (60.7 bits), Expect = 5.4e-08, P = 5.4e-08
Identities = 85/358 (23%), Positives = 146/358 (40%)
Query: 66 VENWSG-TFEWDSRADDVRLNVF--GIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLC 122
V N G TFE ++ + +F G Q+E I ++GRD+L G GK+
Sbjct: 40 VLNTKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAA 99
Query: 123 YQLPAV------LREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKA 176
+ +P + L + AL++ P L + LG + T+
Sbjct: 100 FVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTG-GTNLRDDI 158
Query: 177 LEKGEGELKMLYVTPEKI-SKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDY 235
L E + +L TP ++ + R ++ L C SL +DEA DF+
Sbjct: 159 LRLNE-TVHILVGTPGRVLDLASRKVADLSDC------SLFIMDEAD--KMLSRDFKTII 209
Query: 236 KNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNL--FY-MVRE 292
+ IL P + +AT V+ +++ LH I + + + +Y V E
Sbjct: 210 EQ--ILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEE 267
Query: 293 KSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDIN 352
+ + ++ + +Q + I++C S E +A+++ G S Y HA M
Sbjct: 268 RQKLH--CLNTLFSKLQIN-----QAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQ 320
Query: 353 AREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDG 410
R KV + + K++ +V + GI+ V VI+ K+ ETY GR+GR G
Sbjct: 321 ERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFG 378
>UNIPROTKB|Q91372 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:8355 "Xenopus laevis" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=IDA] [GO:0005635
"nuclear envelope" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0045495 "pole plasm" evidence=IDA] [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS] [GO:0032019
"mitochondrial cloud" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005635 GO:GO:0048477 GO:GO:0007283
GO:GO:0003676 GO:GO:0007281 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 HOVERGEN:HBG015893 CTD:54514 KO:K13982
GO:GO:0071547 EMBL:AF046043 PIR:I51235 RefSeq:NP_001081728.1
UniGene:Xl.256 ProteinModelPortal:Q91372 SMR:Q91372 GeneID:398019
KEGG:xla:398019 Xenbase:XB-GENE-1016814 Uniprot:Q91372
Length = 700
Score = 160 (61.4 bits), Expect = 5.5e-08, P = 5.5e-08
Identities = 87/378 (23%), Positives = 153/378 (40%)
Query: 72 TFEWDSRADDVRLNVF--GIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAV- 128
TFE + + +R NV G Q+ I +++GRD++ G GK+ + LP +
Sbjct: 275 TFEEANLCETLRRNVARAGYVKLTPVQKHSIPIIMAGRDLMACAQTGSGKTAAFLLPILS 334
Query: 129 --LREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIY------------ 174
+ EGI S L L + + + +A P L + + KF Y
Sbjct: 335 YMMNEGIT--ASQYLQLQEPEAIIIA----PTRELINQIYLDARKFSYGTCVRPVVVYGG 388
Query: 175 ----KALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHD 230
A+ E +L TP ++ +SK EK +L + +DEA G
Sbjct: 389 IQPVHAMRDVEKGCNILCATPGRLLD---IVSK-EKIG-LSKLRYLVLDEADRMLDMG-- 441
Query: 231 FRPDYKNLGILKTQFPDVPM---MALTATATQKVQNDLMEMLHIRKCIKFVSTINRP--N 285
F P+ + L + K P + +AT ++++ L V + +
Sbjct: 442 FAPEIEKL-MTKPGMPTKEKRQTLMFSATYPEEIRRLASNYLKSEHLFVVVGLVGGACSD 500
Query: 286 LFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYY 345
+ V E GK+ +++ + ++ S E +++ ++K+ + +A L Q S+
Sbjct: 501 VAQTVLEMRENGKM--EKLLEILKSS--EKERTMIFVNTKKKADFIAGYLCQEKFSSTSI 556
Query: 346 HADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGR 405
H D + RE + K VIV T G++ +V+ VI++ + K V+ Y GR
Sbjct: 557 HGDREQYQRESALWDFRTGKCTVIVCTAVAARGLDIENVQHVINYDVPKEVDEYVHRIGR 616
Query: 406 AGRDGLPSECLLFFRPAD 423
GR G + FF D
Sbjct: 617 TGRCGNTGKATSFFNVQD 634
>ASPGD|ASPL0000014018 [details] [associations]
symbol:fal1 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:BN001302 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
EMBL:AACD01000139 KO:K13025 RefSeq:XP_681285.1
ProteinModelPortal:Q5AUL4 SMR:Q5AUL4 PRIDE:Q5AUL4
EnsemblFungi:CADANIAT00004036 GeneID:2869287 KEGG:ani:AN8016.2
OMA:EDWKFDT OrthoDB:EOG4HTD1W Uniprot:Q5AUL4
Length = 399
Score = 156 (60.0 bits), Expect = 5.7e-08, P = 5.7e-08
Identities = 74/351 (21%), Positives = 153/351 (43%)
Query: 87 FGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPA------VLREGIALVVSP- 139
+G + A Q I + GRD + +G GK+ + + A V+RE ALV+SP
Sbjct: 43 YGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISALQVIDTVVRETQALVLSPT 102
Query: 140 --LLSLIQDQVMCLAA-LGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISK 196
L + IQ +M L + + H T+ ++ + L+ G+ ++ TP +++
Sbjct: 103 RELATQIQSVIMALGDYMNVQCHACIGGTNIGED---IRKLDYGQ---HVVSGTPGRVAD 156
Query: 197 SKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTAT 256
R L H + ++ +DEA G FR + + + P ++ ++AT
Sbjct: 157 MIR-RRHLRTRH----IKMLVLDEADELLNRG--FREQIYD--VYRYLPPATQVVVVSAT 207
Query: 257 ATQKVQNDLMEMLH--IRKCIKFVS-TINRPNLFYMVREKSSVGKVVIDEIAKYIQESYP 313
V + + + +R +K T+ +++ EK K D + + ++
Sbjct: 208 LPYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEE-WK--FDTLCD-LYDTLT 263
Query: 314 NSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTV 373
+++ +++C +R++ + + ++R+ + H +M R+ + + + +V++ T
Sbjct: 264 ITQA-VIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTD 322
Query: 374 AFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADV 424
+ GI+ V VI++ L + E Y GR+GR G + F DV
Sbjct: 323 VWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDV 373
>UNIPROTKB|B4DLW8 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 GO:GO:0003724 HOVERGEN:HBG015893 UniGene:Hs.279806
HGNC:HGNC:2746 ChiTaRS:DDX5 EMBL:AK297192 IPI:IPI00798375
STRING:B4DLW8 Ensembl:ENST00000450599 UCSC:uc010wqa.1
Uniprot:B4DLW8
Length = 535
Score = 158 (60.7 bits), Expect = 6.0e-08, P = 6.0e-08
Identities = 77/307 (25%), Positives = 133/307 (43%)
Query: 133 IALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPE 192
I LV++P L Q QV +AA A L ST IY KG +++ L E
Sbjct: 90 ICLVLAPTRELAQ-QVQQVAAEYCRACRLKSTC-------IYGGAPKGP-QIRDLERGVE 140
Query: 193 K-ISKSKRFMSKLEKCHHAG--RLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVP 249
I+ R + LE C R + + +DEA G F P + I+ PD
Sbjct: 141 ICIATPGRLIDFLE-CGKTNLRRTTYLVLDEADRMLDMG--FEPQIRK--IVDQIRPDRQ 195
Query: 250 MMALTATATQKVQN---D-LMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIA 305
+ +AT ++V+ D L + +HI I + N+ +V V K +++
Sbjct: 196 TLMWSATWPKEVRQLAEDFLKDYIHIN--IGALELSANHNILQIVDVCHDVEKD--EKLI 251
Query: 306 KYIQESYPNSESG-IVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKN 364
+ ++E E+ IV+ +++ C+++ +++R+ G A H D R+ V +
Sbjct: 252 RLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHG 311
Query: 365 KLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADV 424
K +++ T G++ DV+FVI++ S E Y GR R FF P ++
Sbjct: 312 KAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNI 371
Query: 425 PRQSSMV 431
+ S ++
Sbjct: 372 KQVSDLI 378
>TIGR_CMR|GSU_0189 [details] [associations]
symbol:GSU_0189 "ATP-dependent RNA helicase DbpA"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:NP_951250.1
ProteinModelPortal:Q74GQ7 GeneID:2687824 KEGG:gsu:GSU0189
PATRIC:22023124 OMA:VAIASHC BioCyc:GSUL243231:GH27-128-MONOMER
Uniprot:Q74GQ7
Length = 460
Score = 154 (59.3 bits), Expect = 6.2e-08, Sum P(2) = 6.2e-08
Identities = 37/119 (31%), Positives = 62/119 (52%)
Query: 316 ESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAF 375
ES +++C ++ EC++VA L RG +A H D+D R++V +R++ V+V T
Sbjct: 243 ESALIFCNTKLECQEVANALAVRGYAALAIHGDLDQRERDRVLVRFANRSASVLVATDVA 302
Query: 376 GMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDG---------LPSECLLFFRPADVP 425
G++ ++ VI++ L+++ E + GR GR G P E L ADVP
Sbjct: 303 ARGLDIKELSAVINYELTRNPEVHTHRIGRTGRAGERGLAVSLVTPRESRLIAAIADVP 361
Score = 48 (22.0 bits), Expect = 6.2e-08, Sum P(2) = 6.2e-08
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 96 QQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR-EGI-----ALVVSPLLSLIQDQV 148
Q + +L+G+DV+ G GK+ + + + R + + ALV+ P L DQV
Sbjct: 31 QAHSLPLILAGKDVIARAKTGSGKTAAFGIGLLSRLDALSFRVQALVLCPTRELA-DQV 88
>UNIPROTKB|F1NTS2 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9031 "Gallus gallus" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008143 "poly(A) RNA binding"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0045727 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0035145 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143
GeneTree:ENSGT00530000062880 IPI:IPI00588271 EMBL:AADN02041229
EMBL:AADN02041230 ProteinModelPortal:F1NTS2
Ensembl:ENSGALT00000038969 OMA:KTRNGVD ArrayExpress:F1NTS2
Uniprot:F1NTS2
Length = 414
Score = 131 (51.2 bits), Expect = 6.2e-08, Sum P(2) = 6.2e-08
Identities = 23/106 (21%), Positives = 53/106 (50%)
Query: 319 IVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMG 378
+++C ++++ + + +++R+ + H DM RE + + +V++ T + G
Sbjct: 284 VIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARG 343
Query: 379 INKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADV 424
++ P V +I++ L + E Y GR+GR G + F + D+
Sbjct: 344 LDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDI 389
Score = 71 (30.1 bits), Expect = 6.2e-08, Sum P(2) = 6.2e-08
Identities = 23/78 (29%), Positives = 39/78 (50%)
Query: 78 RADDVR-LNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAV------LR 130
R D +R + +G A QQ I ++ GRDV+ +G GK+ + + + +R
Sbjct: 48 REDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVR 107
Query: 131 EGIALVVSPLLSL-IQDQ 147
E AL+++P L +Q Q
Sbjct: 108 ETQALILAPTRELAVQIQ 125
>FB|FBgn0036754 [details] [associations]
symbol:CG5589 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014296
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00550000074863 KO:K14779 OMA:NVMKQSG
RefSeq:NP_649009.1 ProteinModelPortal:Q9VVK8 SMR:Q9VVK8
STRING:Q9VVK8 PRIDE:Q9VVK8 EnsemblMetazoa:FBtr0075170 GeneID:39979
KEGG:dme:Dmel_CG5589 UCSC:CG5589-RA FlyBase:FBgn0036754
InParanoid:Q9VVK8 OrthoDB:EOG4QBZMN PhylomeDB:Q9VVK8
GenomeRNAi:39979 NextBio:816380 Bgee:Q9VVK8 Uniprot:Q9VVK8
Length = 594
Score = 162 (62.1 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 81/357 (22%), Positives = 143/357 (40%)
Query: 96 QQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAV--LRE----GI-ALVVSPLLSLIQDQV 148
Q + + +L R ++ G GK+L + P + LR G+ ALV++P L Q
Sbjct: 146 QMQALPVLLQRRALMACAPTGSGKTLAFLTPIINGLRAHKTTGLRALVLAPTRELAQQIY 205
Query: 149 MCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEK-C 207
A L + T SK E A +K E K Y RF+ + E
Sbjct: 206 RECAELTRETGLRTHFISKVSE-----AKQKHGAECKQRYDILVSTPNRVRFLLQQEPPL 260
Query: 208 HHAGRLSLISIDEAHCCSQWG-HDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLM 266
+ +DEA + G ++F+ ++ + P + +AT T V
Sbjct: 261 LDLSHVEWFVLDEADRLMEEGQNNFKEQLDDIYAACSN-PTKCVAFFSATYTVPVAK--W 317
Query: 267 EMLHIRKCIKFVSTINRPNLFYMVREKSSVGK-----VVIDEIAKYIQESYPNSESGIVY 321
+ H++ ++ + + +E VG V I ++ + Q P +V+
Sbjct: 318 ALRHLKNLVRITIGVQNSATETVQQELLFVGSEGGKLVAIRDLVR--QGLQPPV---LVF 372
Query: 322 CFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINK 381
S++ +Q+ +EL GI+ D HA+ + R+ + + + V++ T G GI+
Sbjct: 373 VQSKERAKQLFEELLYDGINVDVIHAERSQHQRDNCVKAFREGSIWVLICTELMGRGIDF 432
Query: 382 PDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSM-VFYENSG 437
V VI++ + +Y GR GR G P + FF D + + +NSG
Sbjct: 433 KGVNLVINYDFPPTTISYIHRIGRTGRAGRPGRAITFFTQEDTSNLRGIALIIKNSG 489
Score = 43 (20.2 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 17/78 (21%), Positives = 36/78 (46%)
Query: 592 SGGILPHSVLSSQLIRL----ISARKPSTMEEASSNHLEKIIGKLKTGKYGSRILEVISK 647
SGG +P +L + +R + A+KP E+ S+ + G K + +E K
Sbjct: 488 SGGTVPEYMLQMKKVRKSEAKMRAKKPLDREDISTKIRPETKGDEKHKSTKLKKVERTEK 547
Query: 648 CGNSEQQHDNNAVSKEEQ 665
+ + ++ + SK+++
Sbjct: 548 ILKNRKGYEKDLNSKQKK 565
>UNIPROTKB|F1S0I6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:VLDITHV EMBL:CU468562
EMBL:AEMK01095428 EMBL:AEMK01188208 EMBL:FP312832
Ensembl:ENSSSCT00000004740 Uniprot:F1S0I6
Length = 650
Score = 159 (61.0 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 72/321 (22%), Positives = 133/321 (41%)
Query: 103 VLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLT 162
+L G D++ + G GK+L Y +P + VV L M + P L
Sbjct: 275 ILQGIDLIGVAQTGTGKTLSYLMPGFIHVDSQPVVFSLQRARNGPGMLVLT---PTRELA 331
Query: 163 STTSKEDEKFIYKALEK----G----EGELKMLYVTPEKISKSKRFMSKLEKCH--HAGR 212
E K+ YK L+ G +G++K L + I + ++ L+ + +
Sbjct: 332 LQVEAECSKYSYKGLKSVCVYGGGDRDGQIKDLLKGVDIIIATPGRLNDLQMNNFVYLKS 391
Query: 213 LSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIR 272
+S + +DEA G F P + +L + PD + +AT V+ L
Sbjct: 392 ISYLVLDEADKMLDMG--FEPQIMKI-LLDIR-PDRQTVMTSATWPYAVRRLAQSYLK-E 446
Query: 273 KCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQ---ESYPNSESGIVYCFSRKECE 329
I +V T++ L + K ++ DE +IQ ES + I++ + +
Sbjct: 447 PMIVYVGTLD---LVAVSTVKQNIIVTTEDEKRSHIQTFIESMSPKDKVIIFVSRKAVAD 503
Query: 330 QVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIH 389
++ +L R IS + H + + RE+ + K+++++ T G++ DV V +
Sbjct: 504 HLSSDLGIRHISVESLHGNREQGDRERALKNFKTGKVRILIATDLASRGLDVHDVTHVYN 563
Query: 390 HSLSKSVETYYQESGRAGRDG 410
+ +++E Y GR GR G
Sbjct: 564 YDFPRNIEEYVHRVGRTGRAG 584
>UNIPROTKB|Q5ZKB9 [details] [associations]
symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962 GO:GO:0008026
eggNOG:COG0513 GeneTree:ENSGT00530000063986 HOGENOM:HOG000268797
OMA:YSHARMK InterPro:IPR014014 PROSITE:PS51195 HSSP:P26196
EMBL:AJ720165 IPI:IPI00595692 UniGene:Gga.2331
ProteinModelPortal:Q5ZKB9 SMR:Q5ZKB9 Ensembl:ENSGALT00000012405
HOVERGEN:HBG106685 InParanoid:Q5ZKB9 OrthoDB:EOG4J1182
ArrayExpress:Q5ZKB9 Uniprot:Q5ZKB9
Length = 483
Score = 157 (60.3 bits), Expect = 6.5e-08, P = 6.5e-08
Identities = 79/328 (24%), Positives = 145/328 (44%)
Query: 96 QQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR-----EGI-ALVVSPLLSL-IQDQV 148
Q+E I LSGRD+L G GKS Y +P + R + I A+V+ P L +Q
Sbjct: 123 QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQ 182
Query: 149 MCLAALGIPAHM----LTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKI-SKSKRFMSK 203
+C+ + HM + +TT + + + + + + ++ TP +I K+ ++K
Sbjct: 183 ICIQ---VSKHMGGAKVMATTGGTN---LRDDIMRLDDTVHVVIATPGRILDLIKKGVAK 236
Query: 204 LEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALT-ATATQKVQ 262
+E H + +I +DEA DF +++ + + + + + T + QK
Sbjct: 237 VE---H---VQMIVLDEAD--KLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFM 288
Query: 263 NDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYC 322
N ++ + ++ ++ + V E+ V ++ + +Q + I++C
Sbjct: 289 NSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVH--CLNTLFSRLQIN-----QSIIFC 341
Query: 323 FSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKP 382
S + E +A+++ Q G S Y HA M R +V + + +V T F GI+
Sbjct: 342 NSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQ 401
Query: 383 DVRFVIHHSLSKSVETYYQESGRAGRDG 410
V VI+ K ETY GR+GR G
Sbjct: 402 AVNVVINFDFPKLAETYLHRIGRSGRFG 429
>ZFIN|ZDB-GENE-060623-1 [details] [associations]
symbol:ddx52 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
52" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-060623-1
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:11056 HOVERGEN:HBG051332 KO:K14779
OrthoDB:EOG4XKV6Q EMBL:BC117610 IPI:IPI00627696
RefSeq:NP_001037780.1 UniGene:Dr.13799 ProteinModelPortal:Q1ECZ5
STRING:Q1ECZ5 GeneID:407696 KEGG:dre:407696 NextBio:20818558
Uniprot:Q1ECZ5
Length = 606
Score = 158 (60.7 bits), Expect = 7.3e-08, P = 7.3e-08
Identities = 84/381 (22%), Positives = 156/381 (40%)
Query: 64 TAVENWSGTFEWDSRA-DDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLC 122
T E ++ D R +++ F P Q + + ++ R++L G GK++
Sbjct: 163 TTFEELQKEYDLDPRIIHNIKAAGFQTPT--PIQMQAVPLMMHKREILACAPTGSGKTMA 220
Query: 123 YQLP--AVLREGI-----ALVVSPLLSLIQD---QVMCLA-ALGIPAHMLTSTTSKEDEK 171
+ LP A LR+ + AL++SP L +++ L+ +G HM+ +K
Sbjct: 221 FCLPLLAHLRQPLNKGFRALIISPTRELATQTHRELLKLSEGVGFRVHMINKGVEAV-KK 279
Query: 172 FIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHD- 230
+ K+ +K + +L TP ++ +++ + + + +DE+ + G
Sbjct: 280 YGPKSAKKFD----ILVTTPNRLIY---LLNQDPPAINLSSVEWLVVDESDKLFEDGKTG 332
Query: 231 FRPDYKNLGILKTQFPDVPMMALTAT-ATQ-----KVQNDLMEMLHIRKCIKFVSTINRP 284
FR + L P+V + +AT AT K+ D + + I T+ +
Sbjct: 333 FREQLATI-FLACSSPNVRRVLFSATFATDVERWCKLNLDNLVSVSIGARNSAAETVEQQ 391
Query: 285 NLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADY 344
LF S GK++ + I++ + +V+ S ++ EL GI+ D
Sbjct: 392 LLFV----GSENGKILA--MRNLIKQGF--LPPVLVFVQSIDRARELYHELVYEGINVDV 443
Query: 345 YHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESG 404
HAD R+ V + K+ V++ T GI+ + VI++ S Y G
Sbjct: 444 IHADRTQQQRDNVVSSFRSGKIWVLICTALLARGIDFKGINLVINYDFPTSAVEYIHRIG 503
Query: 405 RAGRDGLPSECLLFFRPADVP 425
R GR G + + FF D P
Sbjct: 504 RTGRAGHKGKAVTFFTEDDKP 524
>FB|FBgn0010220 [details] [associations]
symbol:Dbp45A "DEAD box protein 45A" species:7227 "Drosophila
melanogaster" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS;NAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE013599
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 GO:GO:0000381
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
GeneTree:ENSGT00670000098028 EMBL:L13612 EMBL:Z23266 EMBL:AY058728
PIR:S38329 RefSeq:NP_476927.1 UniGene:Dm.4231
ProteinModelPortal:Q07886 SMR:Q07886 PaxDb:Q07886
EnsemblMetazoa:FBtr0088564 GeneID:35917 KEGG:dme:Dmel_CG12759
CTD:35917 FlyBase:FBgn0010220 InParanoid:Q07886 OMA:CQLLSMT
OrthoDB:EOG431ZDJ PhylomeDB:Q07886 GenomeRNAi:35917 NextBio:795815
Bgee:Q07886 GermOnline:CG12759 Uniprot:Q07886
Length = 521
Score = 157 (60.3 bits), Expect = 7.4e-08, P = 7.4e-08
Identities = 77/361 (21%), Positives = 156/361 (43%)
Query: 83 RLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR---EGI---ALV 136
+L G+ QQ+ I A+L+G+D + G GK+ + LP + R E + ALV
Sbjct: 21 QLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILERLSEEPVSHFALV 80
Query: 137 VSPLLSL---IQDQVMCLA-ALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPE 192
++P L I +Q + A+G+ +++ T + E K +++ ++ P
Sbjct: 81 LTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVES--QKLMQRPH----IVVAMPG 134
Query: 193 KISKSKRFMSKLEKCHHAG--RLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPM 250
+++ L C L + +DEA DF D ++L I++ P
Sbjct: 135 RLA------DHLTGCDTFSFDNLKYLVVDEAD--RMLNGDF--D-ESLSIIERCLPKTRQ 183
Query: 251 -MALTATATQKVQNDLMEMLHIRKCIKF-----VSTINRPNLFYMVREKSSVGKVVIDEI 304
+ +AT ++ + + C ++ V+T+ + Y++ V+I+ +
Sbjct: 184 NLFFSATMKDFIKESSIFPI-ASDCFEWSQDSDVATVETLDQRYLLCADYDRDMVLIEAL 242
Query: 305 AKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKN 364
KY +E+ + + +++ ++K C+ ++ L+ I H M R R+ N
Sbjct: 243 RKYREEN--ENANVMIFTNTKKYCQLLSMTLKNMEIDNVCLHGFMRQKERVAALSRFKSN 300
Query: 365 KLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFR-PAD 423
+++ ++ T G++ P V V++H L ++ + Y GR R G + FR P D
Sbjct: 301 QIRTLIATDVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFPRD 360
Query: 424 V 424
+
Sbjct: 361 L 361
>TIGR_CMR|CPS_1590 [details] [associations]
symbol:CPS_1590 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_268332.1 ProteinModelPortal:Q485D3
STRING:Q485D3 GeneID:3522084 KEGG:cps:CPS_1590 PATRIC:21466379
OMA:AISECGY ProtClustDB:CLSK768209
BioCyc:CPSY167879:GI48-1671-MONOMER Uniprot:Q485D3
Length = 455
Score = 156 (60.0 bits), Expect = 7.4e-08, P = 7.4e-08
Identities = 87/352 (24%), Positives = 150/352 (42%)
Query: 96 QQEIINAVLSGRDVLVIMAAGGGKSLCYQLP---AVLREGIALVVSPLLSLIQDQVMCLA 152
QQE I + G D+L G GK+ + LP A+ + A S S ++ +
Sbjct: 28 QQEAIPVIRQGVDLLASAQTGTGKTAAFSLPILDAIAKANHA-AKSSTTSTDENSAEEKS 86
Query: 153 ALG--IPAHMLTSTTS---------KEDEKF--IYKALEKGEGEL----KMLYVTPEK-I 194
A G I A +LT T K+ ++ I + G G++ KML + +
Sbjct: 87 ASGQAIRALILTPTRELANQVADNIKQFSQYLPIKSGVVYGGGKMASQTKMLKQGLDVLV 146
Query: 195 SKSKRFMSKLEKCH-HAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMAL 253
+ R + L + ++ + +DEA G F D + L +L + +M
Sbjct: 147 ATPGRLLEHLALRNVDLSQVKFLVLDEADRMLDMG--FLTDIEKL-LLAVKHKHQTLM-F 202
Query: 254 TATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQE--S 311
+AT + +V++ ++L K I VS N + + K +V V + + + E
Sbjct: 203 SATFSDRVKSLANQLLKSPKTIS-VSKENTTS----GKIKQAVYWVTEERKRELLSELIG 257
Query: 312 YPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVG 371
N + +V+ +++ +A+EL+ GI A H D AR K ++S+ K++V+V
Sbjct: 258 VNNWQQVLVFAGTKESANTLAKELKLDGIKAALCHGDKTQGARNKALEQFSEGKVRVLVA 317
Query: 372 TVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPAD 423
T G++ PD+ FV++ L E Y GR GR G + P D
Sbjct: 318 TDVAARGLDIPDLAFVVNFHLPFLPEDYVHRVGRTGRAGKSGTAISLVSPKD 369
>UNIPROTKB|I3LLD5 [details] [associations]
symbol:I3LLD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 Ensembl:ENSSSCT00000032168 OMA:SKRERIM
Uniprot:I3LLD5
Length = 401
Score = 154 (59.3 bits), Expect = 9.6e-08, P = 9.6e-08
Identities = 93/391 (23%), Positives = 168/391 (42%)
Query: 45 LEAFEASRGSPIQYGGSSSTAV--ENWSGTFEWDSRADDVRLN---VFGIPAY-----RA 94
L +A R P + GG V NW+ DS DD+ L+ + GI AY A
Sbjct: 1 LRGDQAGRTRPGRPGGERPEGVIESNWNEIV--DS-FDDMNLSESLLRGIYAYGFEKPSA 57
Query: 95 NQQEIINAVLSGRDVLVIMAAGGGK------SLCYQLPAVLREGIALVVSPLLSL---IQ 145
QQ I + G DV+ +G GK S+ Q+ L+ ALV++P L IQ
Sbjct: 58 IQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQ 117
Query: 146 DQVMCLAA-LGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYV-TPEKISK--SKRFM 201
VM L +G H T+ E ++K + E + V TP ++ ++R++
Sbjct: 118 KVVMALGDYMGASCHACIGGTNVRAE------VQKLQMEAPHIIVGTPGRVFDMLNRRYL 171
Query: 202 SKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKV 261
S + + +DEA F+ + I + + ++ L+AT +
Sbjct: 172 SPKY-------IKMFVLDEAD--EMLSRGFKDQIYD--IFQKLNSNTQVVLLSAT----M 216
Query: 262 QNDLMEMLH--IRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGI 319
+D++E+ +R I+ T+ FY+ E+ K +D + + E+ +++ +
Sbjct: 217 PSDVLEVTKKFMRDPIRIXLTLEGIRQFYINVEREE-WK--LDTLCD-LYETLTITQA-V 271
Query: 320 VYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGI 379
++ +R++ + + +++ R + H DMD R+ + + +V++ T GI
Sbjct: 272 IFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGI 331
Query: 380 NKPDVRFVIHHSLSKSVETYYQESGRAGRDG 410
+ V VI++ L + E Y GR GR G
Sbjct: 332 DVQQVSLVINYDLPTNRENYIHRIGRGGRFG 362
>TIGR_CMR|SO_4034 [details] [associations]
symbol:SO_4034 "ATP-dependent RNA helicase DeaD"
species:211586 "Shewanella oneidensis MR-1" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0009631 "cold
acclimation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:LPQGMPK RefSeq:NP_719564.1
ProteinModelPortal:Q8EA75 GeneID:1171660 KEGG:son:SO_4034
PATRIC:23527732 ProtClustDB:CLSK907463 Uniprot:Q8EA75
Length = 623
Score = 157 (60.3 bits), Expect = 9.8e-08, P = 9.8e-08
Identities = 69/333 (20%), Positives = 145/333 (43%)
Query: 96 QQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIA-----LVVSPLLSL---IQDQ 147
Q I+ +++G+D+L G GK+ + LP + + LV++P L + +
Sbjct: 33 QSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNKVTSQTTPQILVLAPTRELAVQVAEA 92
Query: 148 VMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKI-SKSKRFMSKLEK 206
A H+L + ++ + AL++G +++ TP ++ +R KLE
Sbjct: 93 FSSYAKFMKNFHVLPIYGGQSMQQQL-NALKRGP---QVIVGTPGRVMDHMRRGTLKLET 148
Query: 207 CHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLM 266
L + +DEA + G F D + IL+ P + +AT ++++ +
Sbjct: 149 ------LQALVLDEADEMLKMG--FIDDIE--WILEHTPPQRQLALFSATMPEQIKR--V 196
Query: 267 EMLHIRKCIKFVSTINRPNLFYMVREKSSVGKV-VIDEIAKYIQESYPNSESGIVYCFSR 325
H++ + + + + V + ++ + + ++ N+E I++ +R
Sbjct: 197 ANKHLKNATNISIAASHTTVDSIEQRFVQVSQHNKLEALVRVLEVE--NTEGIIIFVRTR 254
Query: 326 KECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVR 385
C ++A++L RG ++ H DM+ ARE+ + KL +++ T G++ +
Sbjct: 255 NSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKNGKLDILIATDVAARGLDVERIG 314
Query: 386 FVIHHSLSKSVETYYQESGRAGRDGLPSECLLF 418
V+++ + E Y GR GR G +LF
Sbjct: 315 HVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILF 347
>MGI|MGI:1925644 [details] [associations]
symbol:Ddx52 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 52"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1925644 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 EMBL:CH466556 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:11056
GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486
HOVERGEN:HBG051332 KO:K14779 OMA:NVMKQSG OrthoDB:EOG4XKV6Q
EMBL:AK080767 EMBL:AK133545 EMBL:AL645615 EMBL:BC029094
IPI:IPI00336965 RefSeq:NP_084372.2 UniGene:Mm.280544
ProteinModelPortal:Q8K301 SMR:Q8K301 STRING:Q8K301
PhosphoSite:Q8K301 PaxDb:Q8K301 PRIDE:Q8K301
Ensembl:ENSMUST00000049257 GeneID:78394 KEGG:mmu:78394
InParanoid:Q3UZY9 NextBio:348796 Bgee:Q8K301 CleanEx:MM_DDX52
Genevestigator:Q8K301 GermOnline:ENSMUSG00000020677 Uniprot:Q8K301
Length = 598
Score = 156 (60.0 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 80/349 (22%), Positives = 148/349 (42%)
Query: 96 QQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR------EGI-ALVVSP---LLSLIQ 145
Q + I +L GR++L G GK+L + +P +++ +G ALV+SP L S I
Sbjct: 193 QMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPTNKGFRALVISPTRELASQIH 252
Query: 146 DQVMCLA-ALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKL 204
+++ ++ G HM+ +KF K+ +K + +L TP ++ ++ K
Sbjct: 253 RELIKISEGTGFRIHMIHKAAIAA-KKFGPKSSKKFD----ILVTTPNRLI----YLLKQ 303
Query: 205 EKCH-HAGRLSLISIDEAHCCSQWGHD-FRPDYKNLGILKTQFPDVPMMALTATATQKVQ 262
+ + + +DE+ + G FR ++ + T P V +AT V+
Sbjct: 304 DPPGIDLTNVEWLVVDESDKLFEDGKTGFREQLASIFLACTS-PKVRRAMFSATFAYDVE 362
Query: 263 N------DLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSE 316
D + + I V T+ + LF S GK++ + + +++ +
Sbjct: 363 QWCKLNLDNVVSVSIGARNSAVETVEQELLFV----GSETGKLLA--MRELVKKGF--KP 414
Query: 317 SGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFG 376
+V+ S + +++ EL GI+ D HA+ R+ + K+ V++ T
Sbjct: 415 PVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLA 474
Query: 377 MGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVP 425
GI+ V VI++ S Y GR GR G + + FF D P
Sbjct: 475 RGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNRGKAVTFFTEDDKP 523
>FB|FBgn0037573 [details] [associations]
symbol:eIF4AIII "eIF4AIII" species:7227 "Drosophila
melanogaster" [GO:0016281 "eukaryotic translation initiation factor
4F complex" evidence=ISS] [GO:0003743 "translation initiation
factor activity" evidence=ISS] [GO:0006413 "translational
initiation" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0045495 "pole plasm" evidence=IDA] [GO:0045451 "pole plasm
oskar mRNA localization" evidence=IGI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0006974 "response to
DNA damage stimulus" evidence=IMP] [GO:0008380 "RNA splicing"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0016281
GO:GO:0006974 GO:GO:0003743 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045451 GO:GO:0045495 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 ChiTaRS:EIF4A3
EMBL:AY089635 ProteinModelPortal:Q8SXH3 SMR:Q8SXH3 IntAct:Q8SXH3
STRING:Q8SXH3 PaxDb:Q8SXH3 PRIDE:Q8SXH3 FlyBase:FBgn0037573
InParanoid:Q8SXH3 OrthoDB:EOG4XWDD6 Bgee:Q8SXH3 Uniprot:Q8SXH3
Length = 399
Score = 124 (48.7 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 23/106 (21%), Positives = 54/106 (50%)
Query: 319 IVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMG 378
+++C ++++ + + +++R+ + H DM R+++ + + +V++ T + G
Sbjct: 269 VIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRAGQSRVLITTDVWARG 328
Query: 379 INKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADV 424
I+ V VI++ L + E Y GR+GR G + F + D+
Sbjct: 329 IDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDI 374
Score = 75 (31.5 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 29/94 (30%), Positives = 42/94 (44%)
Query: 87 FGIPAYRANQQEIINAVLSGRDVLVIMAAGGGK------SLCYQLPAVLREGIALVVSPL 140
+G A QQ I ++ GRDV+ +G GK S+ L LRE L +SP
Sbjct: 44 YGFEKPSAIQQRSITPIVKGRDVIAQAQSGTGKTATFSISILQSLDTTLRETQVLCLSPT 103
Query: 141 LSL-IQDQVMCLAA---LGIPAHM-LTSTTSKED 169
L +Q Q + LA + + H+ + T ED
Sbjct: 104 RELAVQIQKVILALGDMMNVQCHVCIGGTNLGED 137
>FB|FBgn0001942 [details] [associations]
symbol:eIF-4a "Eukaryotic initiation factor 4a" species:7227
"Drosophila melanogaster" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0006413 "translational initiation"
evidence=ISS;NAS] [GO:0016281 "eukaryotic translation initiation
factor 4F complex" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS;NAS] [GO:0005829 "cytosol"
evidence=ISS;NAS] [GO:0017116 "single-stranded DNA-dependent
ATP-dependent DNA helicase activity" evidence=NAS] [GO:0006268 "DNA
unwinding involved in replication" evidence=NAS] [GO:0000339 "RNA
cap binding" evidence=NAS] [GO:0003729 "mRNA binding" evidence=NAS]
[GO:0007446 "imaginal disc growth" evidence=TAS] [GO:0002168
"instar larval development" evidence=TAS] [GO:0009950
"dorsal/ventral axis specification" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC] [GO:0000022 "mitotic spindle elongation" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0007067 "mitosis" evidence=IMP] [GO:0006974 "response to DNA
damage stimulus" evidence=IMP] [GO:0048132 "female germ-line stem
cell division" evidence=IGI;IMP] [GO:0030718 "germ-line stem cell
maintenance" evidence=IMP] [GO:0048477 "oogenesis" evidence=IGI]
[GO:0072686 "mitotic spindle" evidence=IDA] [GO:0051297 "centrosome
organization" evidence=IMP] [GO:0005813 "centrosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0005813 GO:GO:0005875 GO:GO:0007067 EMBL:AE014134
GO:GO:0051297 GO:GO:0016281 GO:GO:0006974 GO:GO:0003743
GO:GO:0030718 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000022 GO:GO:0072686 GO:GO:0048132 GO:GO:0002168
GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0007446
GeneTree:ENSGT00530000062880 KO:K03257 OMA:TENDARQ EMBL:X69045
EMBL:AF145621 EMBL:AY069283 EMBL:AY121623 PIR:S30278
RefSeq:NP_001245907.1 RefSeq:NP_476595.1 RefSeq:NP_723137.1
RefSeq:NP_723138.1 RefSeq:NP_723139.1 UniGene:Dm.7226
ProteinModelPortal:Q02748 SMR:Q02748 DIP:DIP-18113N IntAct:Q02748
MINT:MINT-892982 STRING:Q02748 PaxDb:Q02748 PRIDE:Q02748
EnsemblMetazoa:FBtr0079175 EnsemblMetazoa:FBtr0079176
EnsemblMetazoa:FBtr0079177 EnsemblMetazoa:FBtr0079178
EnsemblMetazoa:FBtr0307068 EnsemblMetazoa:FBtr0331201 GeneID:33835
KEGG:dme:Dmel_CG9075 CTD:33835 FlyBase:FBgn0001942
InParanoid:Q02748 OrthoDB:EOG4B8GVF PhylomeDB:Q02748 ChiTaRS:eIF-4a
GenomeRNAi:33835 NextBio:785508 Bgee:Q02748 GermOnline:CG9075
Uniprot:Q02748
Length = 403
Score = 153 (58.9 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 78/352 (22%), Positives = 149/352 (42%)
Query: 87 FGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCY------QLPAVLREGIALVVSP- 139
+G A QQ I + GRDV+ +G GK+ + Q+ +RE AL+++P
Sbjct: 48 YGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIAILQQIDTSIRECQALILAPT 107
Query: 140 --LLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKS 197
L + IQ VM L + H + + + + LE G ++ TP ++
Sbjct: 108 RELATQIQRVVMALGEY-MKVHS-HACIGGTNVREDARILESG---CHVVVGTPGRVYDM 162
Query: 198 KRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATA 257
K+ + + + L +DEA F+ ++ + K PDV ++ L+AT
Sbjct: 163 --INRKVLRTQY---IKLFVLDEAD--EMLSRGFKDQIQD--VFKMLPPDVQVILLSATM 213
Query: 258 TQKVQNDLMEMLHIRKCIKFVS-----TINRPNLFYM-VREKSSVGKVVIDEIAKYIQES 311
V + +R + + T+ FY+ V++++ + D + ++
Sbjct: 214 PPDVLE--VSRCFMRDPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCD-----LYDT 266
Query: 312 YPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVG 371
++S +++C +R++ +Q+ QE+ + H DM+ RE + ++ +V++
Sbjct: 267 LSITQS-VIFCNTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLIT 325
Query: 372 TVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPAD 423
T GI+ V VI++ L + E Y GR GR G + F D
Sbjct: 326 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDD 377
>UNIPROTKB|Q8JFP1 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 GeneTree:ENSGT00530000062880 HSSP:P60842
KO:K03257 OrthoDB:EOG4640C1 CTD:1974 OMA:TENDARQ EMBL:AF515726
EMBL:AJ720280 IPI:IPI00588868 RefSeq:NP_989880.1 UniGene:Gga.4580
ProteinModelPortal:Q8JFP1 SMR:Q8JFP1 STRING:Q8JFP1 PRIDE:Q8JFP1
Ensembl:ENSGALT00000014135 Ensembl:ENSGALT00000039726 GeneID:395232
KEGG:gga:395232 InParanoid:Q8JFP1 NextBio:20815321
ArrayExpress:Q8JFP1 Uniprot:Q8JFP1
Length = 407
Score = 153 (58.9 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 95/402 (23%), Positives = 167/402 (41%)
Query: 48 FEASRGSPIQYGGSSSTAVE-NWSGTFEWDSRADDVRLN---VFGIPAY-----RANQQE 98
+ G P G +E NW+ E DD+ L + GI AY A QQ
Sbjct: 8 YSRDHGGP--EGMEPDGVIESNWN---EIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQR 62
Query: 99 IINAVLSGRDVLVIMAAGGGK------SLCYQLPAVLREGIALVVSPLLSLIQD-QVMCL 151
I + G DV+ +G GK S+ QL L+E ALV++P L Q Q + L
Sbjct: 63 AIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIDLKETQALVLAPTRELAQQIQKVIL 122
Query: 152 AA---LGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYV-TPEKISK--SKRFMSKLE 205
A +G H T+ +E ++K + E + V TP ++ ++R++S
Sbjct: 123 ALGDYMGATCHACIGGTNVRNE------MQKLQAEAPHIVVGTPGRVFDMLNRRYLSP-- 174
Query: 206 KCHHAGRLSLISIDEAHCCSQWGHDFRPD-YKNLGILKTQFPDVPMMALTATATQKVQND 264
K + + +DEA F+ Y+ L T ++ ++ L+AT V
Sbjct: 175 KW-----IKMFVLDEAD--EMLSRGFKDQIYEIFQKLST---NIQVVLLSATMPMDVLEV 224
Query: 265 LMEMLH--IRKCIKFVS-TINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVY 321
+ + IR +K T+ FY+ E+ K +D + + E+ +++ +++
Sbjct: 225 TKKFMREPIRILVKKEELTLEGIKQFYINVEREE-WK--LDTLCD-LYETLTITQA-VIF 279
Query: 322 CFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINK 381
+R++ + + +++ R + H DMD R+ + + +V++ T GI+
Sbjct: 280 LNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDV 339
Query: 382 PDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPAD 423
V VI++ L + E Y GR GR G + F D
Sbjct: 340 QQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEED 381
>UNIPROTKB|Q3SZ65 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 GeneTree:ENSGT00530000062880 KO:K03257
OrthoDB:EOG4640C1 EMBL:BC103106 IPI:IPI00711238
RefSeq:NP_001029216.1 UniGene:Bt.13925 ProteinModelPortal:Q3SZ65
SMR:Q3SZ65 STRING:Q3SZ65 PRIDE:Q3SZ65 Ensembl:ENSBTAT00000019596
GeneID:286819 KEGG:bta:286819 CTD:1974 InParanoid:Q3SZ65
OMA:TENDARQ NextBio:20806473 ArrayExpress:Q3SZ65 Uniprot:Q3SZ65
Length = 407
Score = 153 (58.9 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 95/400 (23%), Positives = 162/400 (40%)
Query: 48 FEASRGSPIQYGGSSSTAVE-NWSGTFEWDSRADDVRLN---VFGIPAY-----RANQQE 98
+ G P G +E NW+ E DD+ L + GI AY A QQ
Sbjct: 8 YNREHGGP--EGMDPDGVIESNWN---EIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQR 62
Query: 99 IINAVLSGRDVLVIMAAGGGK------SLCYQLPAVLREGIALVVSPLLSLIQD-QVMCL 151
I + G DV+ +G GK S+ QL +E ALV++P L Q Q + L
Sbjct: 63 AIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVIL 122
Query: 152 AA---LGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYV-TPEKISK--SKRFMSKLE 205
A +G H T+ +E ++K + E + V TP ++ ++R++S
Sbjct: 123 ALGDYMGATCHACIGGTNVRNE------MQKLQAEAPHIVVGTPGRVFDMLNRRYLSP-- 174
Query: 206 KCHHAGRLSLISIDEAHCCSQWGHDFRPD-YKNLGILKTQFPDVPMMALTATATQKVQND 264
K + + +DEA F+ Y+ L T V + A T +V
Sbjct: 175 KW-----IKMFVLDEAD--EMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKK 227
Query: 265 LMEMLHIRKCIKFVS-TINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCF 323
M IR +K T+ FY+ E+ K +D + + E+ +++ +++
Sbjct: 228 FMRD-PIRILVKKEELTLEGIKQFYINVEREE-WK--LDTLCD-LYETLTITQA-VIFLN 281
Query: 324 SRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPD 383
+R++ + + +++ R + H DMD R+ + + +V++ T GI+
Sbjct: 282 TRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 341
Query: 384 VRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPAD 423
V VI++ L + E Y GR GR G + F D
Sbjct: 342 VSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEED 381
>UNIPROTKB|E2R3J1 [details] [associations]
symbol:EIF4A2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 KO:K03257 CTD:1974 OMA:TENDARQ
EMBL:AAEX03017297 RefSeq:XP_860499.2 ProteinModelPortal:E2R3J1
SMR:E2R3J1 PRIDE:E2R3J1 Ensembl:ENSCAFT00000021683 GeneID:488118
KEGG:cfa:488118 NextBio:20861546 Uniprot:E2R3J1
Length = 407
Score = 153 (58.9 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 95/400 (23%), Positives = 162/400 (40%)
Query: 48 FEASRGSPIQYGGSSSTAVE-NWSGTFEWDSRADDVRLN---VFGIPAY-----RANQQE 98
+ G P G +E NW+ E DD+ L + GI AY A QQ
Sbjct: 8 YNREHGGP--EGMDPDGVIESNWN---EIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQR 62
Query: 99 IINAVLSGRDVLVIMAAGGGK------SLCYQLPAVLREGIALVVSPLLSLIQD-QVMCL 151
I + G DV+ +G GK S+ QL +E ALV++P L Q Q + L
Sbjct: 63 AIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVIL 122
Query: 152 AA---LGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYV-TPEKISK--SKRFMSKLE 205
A +G H T+ +E ++K + E + V TP ++ ++R++S
Sbjct: 123 ALGDYMGATCHACIGGTNVRNE------MQKLQAEAPHIVVGTPGRVFDMLNRRYLSP-- 174
Query: 206 KCHHAGRLSLISIDEAHCCSQWGHDFRPD-YKNLGILKTQFPDVPMMALTATATQKVQND 264
K + + +DEA F+ Y+ L T V + A T +V
Sbjct: 175 KW-----IKMFVLDEAD--EMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKK 227
Query: 265 LMEMLHIRKCIKFVS-TINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCF 323
M IR +K T+ FY+ E+ K +D + + E+ +++ +++
Sbjct: 228 FMRD-PIRILVKKEELTLEGIKQFYINVEREE-WK--LDTLCD-LYETLTITQA-VIFLN 281
Query: 324 SRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPD 383
+R++ + + +++ R + H DMD R+ + + +V++ T GI+
Sbjct: 282 TRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 341
Query: 384 VRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPAD 423
V VI++ L + E Y GR GR G + F D
Sbjct: 342 VSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEED 381
>UNIPROTKB|Q14240 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0004386
"helicase activity" evidence=TAS] [GO:0006446 "regulation of
translational initiation" evidence=TAS] [GO:0016281 "eukaryotic
translation initiation factor 4F complex" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019221 "cytokine-mediated signaling
pathway" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_17015
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 Reactome:REACT_6900
GO:GO:0019048 GO:GO:0006446 GO:GO:0016281 EMBL:CH471052
GO:GO:0019221 GO:GO:0004386 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000289
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG107989 Reactome:REACT_1762 KO:K03257
CTD:1974 OMA:TENDARQ EMBL:D30655 EMBL:BT009860 EMBL:AC112907
EMBL:BC012547 EMBL:BC013708 EMBL:BC015842 EMBL:BC048105
IPI:IPI00328328 IPI:IPI00409717 RefSeq:NP_001958.2
UniGene:Hs.518475 UniGene:Hs.599481 PDB:3BOR PDBsum:3BOR
ProteinModelPortal:Q14240 SMR:Q14240 IntAct:Q14240 MINT:MINT-202114
STRING:Q14240 PhosphoSite:Q14240 DMDM:45645183 PaxDb:Q14240
PRIDE:Q14240 DNASU:1974 Ensembl:ENST00000323963
Ensembl:ENST00000440191 GeneID:1974 KEGG:hsa:1974 UCSC:uc003fqs.3
UCSC:uc003fqu.3 GeneCards:GC03P186539 H-InvDB:HIX0003899
HGNC:HGNC:3284 HPA:CAB011690 MIM:601102 neXtProt:NX_Q14240
PharmGKB:PA27712 InParanoid:Q14240 PhylomeDB:Q14240 ChiTaRS:EIF4A2
EvolutionaryTrace:Q14240 GenomeRNAi:1974 NextBio:7991
PMAP-CutDB:Q14240 ArrayExpress:Q14240 Bgee:Q14240 CleanEx:HS_EIF4A2
Genevestigator:Q14240 GermOnline:ENSG00000156976 Uniprot:Q14240
Length = 407
Score = 153 (58.9 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 95/400 (23%), Positives = 162/400 (40%)
Query: 48 FEASRGSPIQYGGSSSTAVE-NWSGTFEWDSRADDVRLN---VFGIPAY-----RANQQE 98
+ G P G +E NW+ E DD+ L + GI AY A QQ
Sbjct: 8 YNREHGGP--EGMDPDGVIESNWN---EIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQR 62
Query: 99 IINAVLSGRDVLVIMAAGGGK------SLCYQLPAVLREGIALVVSPLLSLIQD-QVMCL 151
I + G DV+ +G GK S+ QL +E ALV++P L Q Q + L
Sbjct: 63 AIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVIL 122
Query: 152 AA---LGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYV-TPEKISK--SKRFMSKLE 205
A +G H T+ +E ++K + E + V TP ++ ++R++S
Sbjct: 123 ALGDYMGATCHACIGGTNVRNE------MQKLQAEAPHIVVGTPGRVFDMLNRRYLSP-- 174
Query: 206 KCHHAGRLSLISIDEAHCCSQWGHDFRPD-YKNLGILKTQFPDVPMMALTATATQKVQND 264
K + + +DEA F+ Y+ L T V + A T +V
Sbjct: 175 KW-----IKMFVLDEAD--EMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKK 227
Query: 265 LMEMLHIRKCIKFVS-TINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCF 323
M IR +K T+ FY+ E+ K +D + + E+ +++ +++
Sbjct: 228 FMRD-PIRILVKKEELTLEGIKQFYINVEREE-WK--LDTLCD-LYETLTITQA-VIFLN 281
Query: 324 SRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPD 383
+R++ + + +++ R + H DMD R+ + + +V++ T GI+
Sbjct: 282 TRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 341
Query: 384 VRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPAD 423
V VI++ L + E Y GR GR G + F D
Sbjct: 342 VSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEED 381
>UNIPROTKB|A6M930 [details] [associations]
symbol:EIF4A2 "Eukaryotic translation initiation factor 4A
isoform 2" species:9823 "Sus scrofa" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003743 "translation initiation factor activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 KO:K03257 CTD:1974 OMA:TENDARQ
EMBL:CU633961 EMBL:DQ351285 RefSeq:NP_001093665.1 UniGene:Ssc.10843
ProteinModelPortal:A6M930 SMR:A6M930 PRIDE:A6M930
Ensembl:ENSSSCT00000012915 GeneID:100101928 KEGG:ssc:100101928
Uniprot:A6M930
Length = 407
Score = 153 (58.9 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 95/400 (23%), Positives = 162/400 (40%)
Query: 48 FEASRGSPIQYGGSSSTAVE-NWSGTFEWDSRADDVRLN---VFGIPAY-----RANQQE 98
+ G P G +E NW+ E DD+ L + GI AY A QQ
Sbjct: 8 YNREHGGP--EGMDPDGVIESNWN---EIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQR 62
Query: 99 IINAVLSGRDVLVIMAAGGGK------SLCYQLPAVLREGIALVVSPLLSLIQD-QVMCL 151
I + G DV+ +G GK S+ QL +E ALV++P L Q Q + L
Sbjct: 63 AIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVIL 122
Query: 152 AA---LGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYV-TPEKISK--SKRFMSKLE 205
A +G H T+ +E ++K + E + V TP ++ ++R++S
Sbjct: 123 ALGDYMGATCHACIGGTNVRNE------MQKLQAEAPHIVVGTPGRVFDMLNRRYLSP-- 174
Query: 206 KCHHAGRLSLISIDEAHCCSQWGHDFRPD-YKNLGILKTQFPDVPMMALTATATQKVQND 264
K + + +DEA F+ Y+ L T V + A T +V
Sbjct: 175 KW-----IKMFVLDEAD--EMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKK 227
Query: 265 LMEMLHIRKCIKFVS-TINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCF 323
M IR +K T+ FY+ E+ K +D + + E+ +++ +++
Sbjct: 228 FMRD-PIRILVKKEELTLEGIKQFYINVEREE-WK--LDTLCD-LYETLTITQA-VIFLN 281
Query: 324 SRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPD 383
+R++ + + +++ R + H DMD R+ + + +V++ T GI+
Sbjct: 282 TRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 341
Query: 384 VRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPAD 423
V VI++ L + E Y GR GR G + F D
Sbjct: 342 VSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEED 381
>MGI|MGI:106906 [details] [associations]
symbol:Eif4a2 "eukaryotic translation initiation factor 4A2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:106906 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 KO:K03257 OrthoDB:EOG4640C1 CTD:1974
OMA:TENDARQ EMBL:X12507 EMBL:X14422 EMBL:X56953 EMBL:AK076509
EMBL:U64706 IPI:IPI00400432 IPI:IPI00409918 PIR:S00985
RefSeq:NP_038534.2 UniGene:Mm.260084 ProteinModelPortal:P10630
SMR:P10630 IntAct:P10630 STRING:P10630 PhosphoSite:P10630
PaxDb:P10630 PRIDE:P10630 Ensembl:ENSMUST00000023599
Ensembl:ENSMUST00000115341 GeneID:13682 KEGG:mmu:13682
NextBio:284442 Bgee:P10630 CleanEx:MM_EIF4A2 Genevestigator:P10630
GermOnline:ENSMUSG00000022884 Uniprot:P10630
Length = 407
Score = 153 (58.9 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 95/400 (23%), Positives = 162/400 (40%)
Query: 48 FEASRGSPIQYGGSSSTAVE-NWSGTFEWDSRADDVRLN---VFGIPAY-----RANQQE 98
+ G P G +E NW+ E DD+ L + GI AY A QQ
Sbjct: 8 YNREHGGP--EGMDPDGVIESNWN---EIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQR 62
Query: 99 IINAVLSGRDVLVIMAAGGGK------SLCYQLPAVLREGIALVVSPLLSLIQD-QVMCL 151
I + G DV+ +G GK S+ QL +E ALV++P L Q Q + L
Sbjct: 63 AIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVIL 122
Query: 152 AA---LGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYV-TPEKISK--SKRFMSKLE 205
A +G H T+ +E ++K + E + V TP ++ ++R++S
Sbjct: 123 ALGDYMGATCHACIGGTNVRNE------MQKLQAEAPHIVVGTPGRVFDMLNRRYLSP-- 174
Query: 206 KCHHAGRLSLISIDEAHCCSQWGHDFRPD-YKNLGILKTQFPDVPMMALTATATQKVQND 264
K + + +DEA F+ Y+ L T V + A T +V
Sbjct: 175 KW-----IKMFVLDEAD--EMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKK 227
Query: 265 LMEMLHIRKCIKFVS-TINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCF 323
M IR +K T+ FY+ E+ K +D + + E+ +++ +++
Sbjct: 228 FMRD-PIRILVKKEELTLEGIKQFYINVEREE-WK--LDTLCD-LYETLTITQA-VIFLN 281
Query: 324 SRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPD 383
+R++ + + +++ R + H DMD R+ + + +V++ T GI+
Sbjct: 282 TRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 341
Query: 384 VRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPAD 423
V VI++ L + E Y GR GR G + F D
Sbjct: 342 VSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEED 381
>RGD|1309225 [details] [associations]
symbol:Eif4a2 "eukaryotic translation initiation factor 4A2"
species:10116 "Rattus norvegicus" [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1309225 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989 HSSP:P60842
KO:K03257 OrthoDB:EOG4640C1 CTD:1974 EMBL:BC085859 IPI:IPI00193595
RefSeq:NP_001008336.1 UniGene:Rn.143972 ProteinModelPortal:Q5RKI1
SMR:Q5RKI1 STRING:Q5RKI1 PhosphoSite:Q5RKI1
World-2DPAGE:0004:Q5RKI1 PRIDE:Q5RKI1 GeneID:303831 KEGG:rno:303831
UCSC:RGD:1309225 InParanoid:Q5RKI1 NextBio:652169
ArrayExpress:Q5RKI1 Genevestigator:Q5RKI1
GermOnline:ENSRNOG00000001815 Uniprot:Q5RKI1
Length = 407
Score = 153 (58.9 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 95/400 (23%), Positives = 162/400 (40%)
Query: 48 FEASRGSPIQYGGSSSTAVE-NWSGTFEWDSRADDVRLN---VFGIPAY-----RANQQE 98
+ G P G +E NW+ E DD+ L + GI AY A QQ
Sbjct: 8 YNREHGGP--EGMDPDGVIESNWN---EIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQR 62
Query: 99 IINAVLSGRDVLVIMAAGGGK------SLCYQLPAVLREGIALVVSPLLSLIQD-QVMCL 151
I + G DV+ +G GK S+ QL +E ALV++P L Q Q + L
Sbjct: 63 AIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVIL 122
Query: 152 AA---LGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYV-TPEKISK--SKRFMSKLE 205
A +G H T+ +E ++K + E + V TP ++ ++R++S
Sbjct: 123 ALGDYMGATCHACIGGTNVRNE------MQKLQAEAPHIVVGTPGRVFDMLNRRYLSP-- 174
Query: 206 KCHHAGRLSLISIDEAHCCSQWGHDFRPD-YKNLGILKTQFPDVPMMALTATATQKVQND 264
K + + +DEA F+ Y+ L T V + A T +V
Sbjct: 175 KW-----IKMFVLDEAD--EMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKK 227
Query: 265 LMEMLHIRKCIKFVS-TINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCF 323
M IR +K T+ FY+ E+ K +D + + E+ +++ +++
Sbjct: 228 FMRD-PIRILVKKEELTLEGIKQFYINVEREE-WK--LDTLCD-LYETLTITQA-VIFLN 281
Query: 324 SRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPD 383
+R++ + + +++ R + H DMD R+ + + +V++ T GI+
Sbjct: 282 TRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 341
Query: 384 VRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPAD 423
V VI++ L + E Y GR GR G + F D
Sbjct: 342 VSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEED 381
>RGD|1308685 [details] [associations]
symbol:Ddx23 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 23"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005682 "U5 snRNP"
evidence=IEA;ISO] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0005886 "plasma membrane" evidence=IEA;ISO] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1308685 GO:GO:0005524
GO:GO:0003676 GeneTree:ENSGT00690000102171 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CH474035 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE
RefSeq:NP_001100263.2 UniGene:Rn.2319 Ensembl:ENSRNOT00000055529
GeneID:300208 KEGG:rno:300208 NextBio:646540 Uniprot:G3V9M1
Length = 819
Score = 132 (51.5 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 32/116 (27%), Positives = 54/116 (46%)
Query: 319 IVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMG 378
I++ +K C+ +A+ L + G +A H RE ++V T G G
Sbjct: 667 IIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRG 726
Query: 379 INKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFYE 434
I+ DV V+++ ++K++E Y GR GR G + F + ++ S VFYE
Sbjct: 727 IDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITF-----LTKEDSAVFYE 777
Score = 75 (31.5 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 40/179 (22%), Positives = 71/179 (39%)
Query: 1 METEEILQELENVEAEVRLVQEQIKQLVDRQDQLYERQSELKSLLEA-FEASRG--SPIQ 57
ME L+E E EA +R +++ K+ R D + Q +L + + + R S
Sbjct: 323 MEKRRTLEEKEQEEARLRKLRK--KEAKQRWDDRHWSQKKLDEMTDRDWRIFREDYSITT 380
Query: 58 YGGSSSTAVENWSGTFEWDSRADDVRLNVFGIPAYRAN---QQEIINAVLSGRDVLVIMA 114
GG + +W DS L V Y+ Q++ I L RD++ +
Sbjct: 381 KGGKIPNPIRSWK-----DSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAE 435
Query: 115 AGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMCLAALGI-PAHMLTSTTSKEDEKF 172
G GK+ + +P + + + P + I++ A+ + P L +E KF
Sbjct: 436 TGSGKTAAFLIPLL----VWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKF 490
Score = 38 (18.4 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 2 ETEEILQELENVEAEVRLVQEQIKQLVDRQDQLYERQSELK 42
E E + L E E ++ + +++ +RQ L E + + K
Sbjct: 155 EAEAKPKFLSKAEREAEALKRRQQEVEERQKMLEEERKKRK 195
>UNIPROTKB|A6QLB2 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005886
GO:GO:0005524 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 CTD:9416 HOGENOM:HOG000268796
HOVERGEN:HBG102054 OMA:PIRNWKE OrthoDB:EOG46T312 EMBL:DAAA02012954
EMBL:BC147902 IPI:IPI00866828 RefSeq:NP_001095672.1
UniGene:Bt.14027 STRING:A6QLB2 Ensembl:ENSBTAT00000029071
GeneID:537395 KEGG:bta:537395 InParanoid:A6QLB2 NextBio:20877127
Uniprot:A6QLB2
Length = 820
Score = 132 (51.5 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 32/116 (27%), Positives = 54/116 (46%)
Query: 319 IVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMG 378
I++ +K C+ +A+ L + G +A H RE ++V T G G
Sbjct: 668 IIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRG 727
Query: 379 INKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFYE 434
I+ DV V+++ ++K++E Y GR GR G + F + ++ S VFYE
Sbjct: 728 IDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITF-----LTKEDSAVFYE 778
Score = 75 (31.5 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 40/179 (22%), Positives = 71/179 (39%)
Query: 1 METEEILQELENVEAEVRLVQEQIKQLVDRQDQLYERQSELKSLLEA-FEASRG--SPIQ 57
ME L+E E EA +R +++ K+ R D + Q +L + + + R S
Sbjct: 324 MEKRRTLEEKEQEEARLRKLRK--KEAKQRWDDRHWSQKKLDEMTDRDWRIFREDYSITT 381
Query: 58 YGGSSSTAVENWSGTFEWDSRADDVRLNVFGIPAYRAN---QQEIINAVLSGRDVLVIMA 114
GG + +W DS L V Y+ Q++ I L RD++ +
Sbjct: 382 KGGKIPNPIRSWK-----DSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAE 436
Query: 115 AGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMCLAALGI-PAHMLTSTTSKEDEKF 172
G GK+ + +P + + + P + I++ A+ + P L +E KF
Sbjct: 437 TGSGKTAAFLIPLL----VWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKF 491
>UNIPROTKB|E2RTL6 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005739
GO:GO:0005886 GO:GO:0005524 GO:GO:0005682 GO:GO:0003676
GO:GO:0071013 GeneTree:ENSGT00690000102171 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE EMBL:AAEX03015077
RefSeq:XP_851051.1 ProteinModelPortal:E2RTL6
Ensembl:ENSCAFT00000013894 GeneID:477624 KEGG:cfa:477624
NextBio:20853071 Uniprot:E2RTL6
Length = 820
Score = 132 (51.5 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 32/116 (27%), Positives = 54/116 (46%)
Query: 319 IVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMG 378
I++ +K C+ +A+ L + G +A H RE ++V T G G
Sbjct: 668 IIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRG 727
Query: 379 INKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFYE 434
I+ DV V+++ ++K++E Y GR GR G + F + ++ S VFYE
Sbjct: 728 IDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITF-----LTKEDSAVFYE 778
Score = 75 (31.5 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 40/179 (22%), Positives = 71/179 (39%)
Query: 1 METEEILQELENVEAEVRLVQEQIKQLVDRQDQLYERQSELKSLLEA-FEASRG--SPIQ 57
ME L+E E EA +R +++ K+ R D + Q +L + + + R S
Sbjct: 324 MEKRRTLEEKEQEEARLRKLRK--KEAKQRWDDRHWSQKKLDEMTDRDWRIFREDYSITT 381
Query: 58 YGGSSSTAVENWSGTFEWDSRADDVRLNVFGIPAYRAN---QQEIINAVLSGRDVLVIMA 114
GG + +W DS L V Y+ Q++ I L RD++ +
Sbjct: 382 KGGKIPNPIRSWK-----DSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAE 436
Query: 115 AGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMCLAALGI-PAHMLTSTTSKEDEKF 172
G GK+ + +P + + + P + I++ A+ + P L +E KF
Sbjct: 437 TGSGKTAAFLIPLL----VWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKF 491
>UNIPROTKB|Q9BUQ8 [details] [associations]
symbol:DDX23 "Probable ATP-dependent RNA helicase DDX23"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0000354
"cis assembly of pre-catalytic spliceosome" evidence=IC]
[GO:0005682 "U5 snRNP" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:AF026402 GO:GO:0005739
GO:GO:0005886 GO:GO:0005524 GO:GO:0005654 Reactome:REACT_1675
GO:GO:0005682 GO:GO:0003676 EMBL:CH471111 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000354
KO:K12858 EMBL:AK312379 EMBL:BC002366 IPI:IPI00006725
RefSeq:NP_004809.2 UniGene:Hs.130098 ProteinModelPortal:Q9BUQ8
SMR:Q9BUQ8 DIP:DIP-34974N IntAct:Q9BUQ8 MINT:MINT-1572793
STRING:Q9BUQ8 PhosphoSite:Q9BUQ8 DMDM:160385708 PaxDb:Q9BUQ8
PRIDE:Q9BUQ8 DNASU:9416 Ensembl:ENST00000308025 GeneID:9416
KEGG:hsa:9416 UCSC:uc001rsm.3 CTD:9416 GeneCards:GC12M049223
HGNC:HGNC:17347 HPA:HPA038680 MIM:612172 neXtProt:NX_Q9BUQ8
PharmGKB:PA134934941 HOGENOM:HOG000268796 HOVERGEN:HBG102054
InParanoid:Q9BUQ8 OMA:PIRNWKE OrthoDB:EOG46T312 PhylomeDB:Q9BUQ8
GenomeRNAi:9416 NextBio:35278 ArrayExpress:Q9BUQ8 Bgee:Q9BUQ8
CleanEx:HS_DDX23 Genevestigator:Q9BUQ8 GermOnline:ENSG00000174243
Uniprot:Q9BUQ8
Length = 820
Score = 132 (51.5 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 32/116 (27%), Positives = 54/116 (46%)
Query: 319 IVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMG 378
I++ +K C+ +A+ L + G +A H RE ++V T G G
Sbjct: 668 IIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRG 727
Query: 379 INKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFYE 434
I+ DV V+++ ++K++E Y GR GR G + F + ++ S VFYE
Sbjct: 728 IDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITF-----LTKEDSAVFYE 778
Score = 75 (31.5 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 40/179 (22%), Positives = 71/179 (39%)
Query: 1 METEEILQELENVEAEVRLVQEQIKQLVDRQDQLYERQSELKSLLEA-FEASRG--SPIQ 57
ME L+E E EA +R +++ K+ R D + Q +L + + + R S
Sbjct: 324 MEKRRTLEEKEQEEARLRKLRK--KEAKQRWDDRHWSQKKLDEMTDRDWRIFREDYSITT 381
Query: 58 YGGSSSTAVENWSGTFEWDSRADDVRLNVFGIPAYRAN---QQEIINAVLSGRDVLVIMA 114
GG + +W DS L V Y+ Q++ I L RD++ +
Sbjct: 382 KGGKIPNPIRSWK-----DSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAE 436
Query: 115 AGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMCLAALGI-PAHMLTSTTSKEDEKF 172
G GK+ + +P + + + P + I++ A+ + P L +E KF
Sbjct: 437 TGSGKTAAFLIPLL----VWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKF 491
>UNIPROTKB|Q9NXZ2 [details] [associations]
symbol:DDX43 "Probable ATP-dependent RNA helicase DDX43"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 EMBL:AJ278110 EMBL:AL136751 EMBL:BC066938
IPI:IPI00032899 RefSeq:NP_061135.2 UniGene:Hs.125507
ProteinModelPortal:Q9NXZ2 SMR:Q9NXZ2 STRING:Q9NXZ2
PhosphoSite:Q9NXZ2 DMDM:145559466 PRIDE:Q9NXZ2 DNASU:55510
Ensembl:ENST00000370336 GeneID:55510 KEGG:hsa:55510 UCSC:uc003pgw.3
CTD:55510 GeneCards:GC06P074161 HGNC:HGNC:18677 HPA:HPA031380
HPA:HPA031381 MIM:606286 neXtProt:NX_Q9NXZ2 PharmGKB:PA134988734
InParanoid:Q9NXZ2 OMA:VLDITHV OrthoDB:EOG43BMNQ PhylomeDB:Q9NXZ2
ChiTaRS:DDX43 GenomeRNAi:55510 NextBio:59918 ArrayExpress:Q9NXZ2
Bgee:Q9NXZ2 CleanEx:HS_DDX43 Genevestigator:Q9NXZ2
GermOnline:ENSG00000080007 Uniprot:Q9NXZ2
Length = 648
Score = 156 (60.0 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 76/326 (23%), Positives = 136/326 (41%)
Query: 103 VLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLT 162
VL G D++ + G GK+LCY +P + LV+ P L +++ L P L
Sbjct: 276 VLQGIDLIGVAQTGTGKTLCYLMPGFIH----LVLQPSLKGQRNRPGMLVLT--PTRELA 329
Query: 163 STTSKEDEKFIYKALEK----GEG-------ELK----MLYVTPEKISKSKRFMSKLEKC 207
E K+ YK L G G ELK ++ TP +++ + MS
Sbjct: 330 LQVEGECCKYSYKGLRSVCVYGGGNRDEQIEELKKGVDIIIATPGRLNDLQ--MSNFVNL 387
Query: 208 HHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLME 267
+ ++ + +DEA G F P + +L + PD + +AT V
Sbjct: 388 KN---ITYLVLDEADKMLDMG--FEPQIMKI-LLDVR-PDRQTVMTSATWPHSVHRLAQS 440
Query: 268 MLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQ---ESYPNSESGIVYCFS 324
L I +V T++ L + K ++ +E ++Q +S +++ IV+
Sbjct: 441 YLK-EPMIVYVGTLD---LVAVSSVKQNIIVTTEEEKWSHMQTFLQSMSSTDKVIVFVSR 496
Query: 325 RKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDV 384
+ + ++ +L IS + H D + REK + K+++++ T G++ DV
Sbjct: 497 KAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVRILIATDLASRGLDVHDV 556
Query: 385 RFVIHHSLSKSVETYYQESGRAGRDG 410
V + +++E Y GR GR G
Sbjct: 557 THVYNFDFPRNIEEYVHRIGRTGRAG 582
>UNIPROTKB|Q9KLH6 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 153 (58.9 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 83/350 (23%), Positives = 142/350 (40%)
Query: 76 DSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR----- 130
DSR + L+ GI QQ+ I VL G+DVL G GK+ + LP + R
Sbjct: 14 DSRLLNT-LSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIEQP 72
Query: 131 --------EGIALVVSPLLSLIQDQVMCLAALGIPAHM-LTSTTSKEDEKFIYKALEKGE 181
E ALV+ P L Q + L A + + + K L G
Sbjct: 73 WQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLRGG- 131
Query: 182 GELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGIL 241
+ +L TP ++ S G++ ++ +DEA G F PD + +L
Sbjct: 132 --VDILIATPGRLLDHAHVKSLF-----LGKVEVLVLDEADRMLDMG--FMPDLQR--VL 180
Query: 242 KTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVI 301
+ P + +AT K++ ++ R I+ T + + + V K
Sbjct: 181 RRLSPLRQTLFFSATFDSKIKAVAYRIM--RDPIEVQVTPSNSTAETVQQMVYPVDKKRK 238
Query: 302 DEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRW 361
E+ Y+ S N + +V+ +R+ + +A+EL+ GI A + D AR+K +
Sbjct: 239 RELLSYLIGS-KNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDF 297
Query: 362 SKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGL 411
K++ ++ T G++ + V+++ + E Y GR GR GL
Sbjct: 298 KAGKVRALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGL 347
>TIGR_CMR|VC_A0768 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 153 (58.9 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 83/350 (23%), Positives = 142/350 (40%)
Query: 76 DSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR----- 130
DSR + L+ GI QQ+ I VL G+DVL G GK+ + LP + R
Sbjct: 14 DSRLLNT-LSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIEQP 72
Query: 131 --------EGIALVVSPLLSLIQDQVMCLAALGIPAHM-LTSTTSKEDEKFIYKALEKGE 181
E ALV+ P L Q + L A + + + K L G
Sbjct: 73 WQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLRGG- 131
Query: 182 GELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGIL 241
+ +L TP ++ S G++ ++ +DEA G F PD + +L
Sbjct: 132 --VDILIATPGRLLDHAHVKSLF-----LGKVEVLVLDEADRMLDMG--FMPDLQR--VL 180
Query: 242 KTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVI 301
+ P + +AT K++ ++ R I+ T + + + V K
Sbjct: 181 RRLSPLRQTLFFSATFDSKIKAVAYRIM--RDPIEVQVTPSNSTAETVQQMVYPVDKKRK 238
Query: 302 DEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRW 361
E+ Y+ S N + +V+ +R+ + +A+EL+ GI A + D AR+K +
Sbjct: 239 RELLSYLIGS-KNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDF 297
Query: 362 SKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGL 411
K++ ++ T G++ + V+++ + E Y GR GR GL
Sbjct: 298 KAGKVRALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGL 347
>UNIPROTKB|E1BDM8 [details] [associations]
symbol:DDX6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:DAAA02040478
EMBL:DAAA02040479 IPI:IPI00697295 RefSeq:NP_001137339.1
UniGene:Bt.12357 PRIDE:E1BDM8 Ensembl:ENSBTAT00000011952
GeneID:513906 KEGG:bta:513906 NextBio:20871085 Uniprot:E1BDM8
Length = 483
Score = 154 (59.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 78/328 (23%), Positives = 145/328 (44%)
Query: 96 QQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR-----EGI-ALVVSPLLSL-IQDQV 148
Q+E I LSGRD+L G GKS Y +P + R + I A+V+ P L +Q
Sbjct: 123 QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQ 182
Query: 149 MCLAALGIPAHM----LTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKI-SKSKRFMSK 203
+C+ + HM + +TT + + + + + + ++ TP +I K+ ++K
Sbjct: 183 ICIQ---VSKHMGGAKVMATTGGTN---LRDDIMRLDDTVHVVIATPGRILDLIKKGVAK 236
Query: 204 LEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALT-ATATQKVQ 262
++ H + +I +DEA DF +++ + + + + + T + QK
Sbjct: 237 VD---H---VQMIVLDEAD--KLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFM 288
Query: 263 NDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYC 322
N ++ + ++ ++ + V E+ V ++ + +Q + I++C
Sbjct: 289 NSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVH--CLNTLFSRLQIN-----QSIIFC 341
Query: 323 FSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKP 382
S + E +A+++ Q G S Y HA M R +V + + +V T F GI+
Sbjct: 342 NSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQ 401
Query: 383 DVRFVIHHSLSKSVETYYQESGRAGRDG 410
V VI+ K ETY GR+GR G
Sbjct: 402 AVNVVINFDFPKLAETYLHRIGRSGRFG 429
>UNIPROTKB|E2RR01 [details] [associations]
symbol:DDX6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:AAEX03003444
RefSeq:XP_849975.1 Ensembl:ENSCAFT00000019743 GeneID:479414
KEGG:cfa:479414 NextBio:20854600 Uniprot:E2RR01
Length = 483
Score = 154 (59.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 78/328 (23%), Positives = 145/328 (44%)
Query: 96 QQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR-----EGI-ALVVSPLLSL-IQDQV 148
Q+E I LSGRD+L G GKS Y +P + R + I A+V+ P L +Q
Sbjct: 123 QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQ 182
Query: 149 MCLAALGIPAHM----LTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKI-SKSKRFMSK 203
+C+ + HM + +TT + + + + + + ++ TP +I K+ ++K
Sbjct: 183 ICIQ---VSKHMGGAKVMATTGGTN---LRDDIMRLDDTVHVVIATPGRILDLIKKGVAK 236
Query: 204 LEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALT-ATATQKVQ 262
++ H + +I +DEA DF +++ + + + + + T + QK
Sbjct: 237 VD---H---VQMIVLDEAD--KLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFM 288
Query: 263 NDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYC 322
N ++ + ++ ++ + V E+ V ++ + +Q + I++C
Sbjct: 289 NSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVH--CLNTLFSRLQIN-----QSIIFC 341
Query: 323 FSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKP 382
S + E +A+++ Q G S Y HA M R +V + + +V T F GI+
Sbjct: 342 NSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQ 401
Query: 383 DVRFVIHHSLSKSVETYYQESGRAGRDG 410
V VI+ K ETY GR+GR G
Sbjct: 402 AVNVVINFDFPKLAETYLHRIGRSGRFG 429
>UNIPROTKB|P26196 [details] [associations]
symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0004386 "helicase activity" evidence=TAS]
[GO:0003724 "RNA helicase activity" evidence=TAS] [GO:0016442
"RNA-induced silencing complex" evidence=IDA] [GO:0033962
"cytoplasmic mRNA processing body assembly" evidence=IDA]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
GO:GO:0010467 GO:GO:0003723 GO:GO:0000932 GO:GO:0016442
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0033962 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
KO:K12614 OMA:YSHARMK GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043928 HOVERGEN:HBG106685 OrthoDB:EOG4J1182
EMBL:Z11685 EMBL:BC065007 EMBL:D17532 IPI:IPI00030320 PIR:S22651
RefSeq:NP_001244120.1 RefSeq:NP_004388.2 UniGene:Hs.408461 PDB:1VEC
PDB:2WAX PDB:2WAY PDBsum:1VEC PDBsum:2WAX PDBsum:2WAY
ProteinModelPortal:P26196 SMR:P26196 DIP:DIP-29195N IntAct:P26196
STRING:P26196 PhosphoSite:P26196 DMDM:116241327
DOSAC-COBS-2DPAGE:P26196 PaxDb:P26196 PeptideAtlas:P26196
PRIDE:P26196 DNASU:1656 Ensembl:ENST00000264018
Ensembl:ENST00000526070 Ensembl:ENST00000534980 GeneID:1656
KEGG:hsa:1656 UCSC:uc001pub.2 CTD:1656 GeneCards:GC11M118654
HGNC:HGNC:2747 HPA:CAB004668 HPA:HPA024201 HPA:HPA026644 MIM:600326
neXtProt:NX_P26196 PharmGKB:PA27229 InParanoid:P26196
PhylomeDB:P26196 ChiTaRS:DDX6 EvolutionaryTrace:P26196
GenomeRNAi:1656 NextBio:6820 ArrayExpress:P26196 Bgee:P26196
CleanEx:HS_DDX6 Genevestigator:P26196 GermOnline:ENSG00000110367
Uniprot:P26196
Length = 483
Score = 154 (59.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 78/328 (23%), Positives = 145/328 (44%)
Query: 96 QQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR-----EGI-ALVVSPLLSL-IQDQV 148
Q+E I LSGRD+L G GKS Y +P + R + I A+V+ P L +Q
Sbjct: 123 QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQ 182
Query: 149 MCLAALGIPAHM----LTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKI-SKSKRFMSK 203
+C+ + HM + +TT + + + + + + ++ TP +I K+ ++K
Sbjct: 183 ICIQ---VSKHMGGAKVMATTGGTN---LRDDIMRLDDTVHVVIATPGRILDLIKKGVAK 236
Query: 204 LEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALT-ATATQKVQ 262
++ H + +I +DEA DF +++ + + + + + T + QK
Sbjct: 237 VD---H---VQMIVLDEAD--KLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFM 288
Query: 263 NDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYC 322
N ++ + ++ ++ + V E+ V ++ + +Q + I++C
Sbjct: 289 NSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVH--CLNTLFSRLQIN-----QSIIFC 341
Query: 323 FSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKP 382
S + E +A+++ Q G S Y HA M R +V + + +V T F GI+
Sbjct: 342 NSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQ 401
Query: 383 DVRFVIHHSLSKSVETYYQESGRAGRDG 410
V VI+ K ETY GR+GR G
Sbjct: 402 AVNVVINFDFPKLAETYLHRIGRSGRFG 429
>UNIPROTKB|F1SAJ5 [details] [associations]
symbol:DDX6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:FP089499
RefSeq:XP_003129962.1 RefSeq:XP_003357372.1 UniGene:Ssc.97711
Ensembl:ENSSSCT00000016463 GeneID:100515499 KEGG:ssc:100515499
Uniprot:F1SAJ5
Length = 483
Score = 154 (59.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 78/328 (23%), Positives = 145/328 (44%)
Query: 96 QQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR-----EGI-ALVVSPLLSL-IQDQV 148
Q+E I LSGRD+L G GKS Y +P + R + I A+V+ P L +Q
Sbjct: 123 QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQ 182
Query: 149 MCLAALGIPAHM----LTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKI-SKSKRFMSK 203
+C+ + HM + +TT + + + + + + ++ TP +I K+ ++K
Sbjct: 183 ICIQ---VSKHMGGAKVMATTGGTN---LRDDIMRLDDTVHVVIATPGRILDLIKKGVAK 236
Query: 204 LEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALT-ATATQKVQ 262
++ H + +I +DEA DF +++ + + + + + T + QK
Sbjct: 237 VD---H---VQMIVLDEAD--KLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFM 288
Query: 263 NDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYC 322
N ++ + ++ ++ + V E+ V ++ + +Q + I++C
Sbjct: 289 NSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVH--CLNTLFSRLQIN-----QSIIFC 341
Query: 323 FSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKP 382
S + E +A+++ Q G S Y HA M R +V + + +V T F GI+
Sbjct: 342 NSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQ 401
Query: 383 DVRFVIHHSLSKSVETYYQESGRAGRDG 410
V VI+ K ETY GR+GR G
Sbjct: 402 AVNVVINFDFPKLAETYLHRIGRSGRFG 429
>MGI|MGI:104976 [details] [associations]
symbol:Ddx6 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 6"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISO] [GO:0016442 "RNA-induced silencing complex"
evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:104976 GO:GO:0005524
GO:GO:0003723 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 eggNOG:COG0513 GeneTree:ENSGT00530000063986
HOGENOM:HOG000268797 KO:K12614 OMA:YSHARMK InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG106685 OrthoDB:EOG4J1182 CTD:1656
EMBL:D50494 EMBL:AK054144 EMBL:AK148483 EMBL:BC021452 EMBL:AF038995
IPI:IPI00109932 RefSeq:NP_001104296.1 RefSeq:NP_031867.1
RefSeq:NP_851841.2 UniGene:Mm.267061 ProteinModelPortal:P54823
SMR:P54823 IntAct:P54823 STRING:P54823 PhosphoSite:P54823
PaxDb:P54823 PRIDE:P54823 Ensembl:ENSMUST00000170489 GeneID:13209
KEGG:mmu:13209 UCSC:uc009pdy.2 InParanoid:P54823 NextBio:283376
Bgee:P54823 CleanEx:MM_DDX6 Genevestigator:P54823
GermOnline:ENSMUSG00000032097 Uniprot:P54823
Length = 483
Score = 154 (59.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 78/328 (23%), Positives = 145/328 (44%)
Query: 96 QQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR-----EGI-ALVVSPLLSL-IQDQV 148
Q+E I LSGRD+L G GKS Y +P + R + I A+V+ P L +Q
Sbjct: 123 QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQ 182
Query: 149 MCLAALGIPAHM----LTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKI-SKSKRFMSK 203
+C+ + HM + +TT + + + + + + ++ TP +I K+ ++K
Sbjct: 183 ICIQ---VSKHMGGAKVMATTGGTN---LRDDIMRLDDTVHVVIATPGRILDLIKKGVAK 236
Query: 204 LEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALT-ATATQKVQ 262
++ H + +I +DEA DF +++ + + + + + T + QK
Sbjct: 237 VD---H---VQMIVLDEAD--KLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFM 288
Query: 263 NDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYC 322
N ++ + ++ ++ + V E+ V ++ + +Q + I++C
Sbjct: 289 NSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVH--CLNTLFSRLQIN-----QSIIFC 341
Query: 323 FSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKP 382
S + E +A+++ Q G S Y HA M R +V + + +V T F GI+
Sbjct: 342 NSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQ 401
Query: 383 DVRFVIHHSLSKSVETYYQESGRAGRDG 410
V VI+ K ETY GR+GR G
Sbjct: 402 AVNVVINFDFPKLAETYLHRIGRSGRFG 429
>RGD|1564560 [details] [associations]
symbol:Ddx6 "DEAD (Asp-Glu-Ala-Asp) box helicase 6"
species:10116 "Rattus norvegicus" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IEA;ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA;ISO] [GO:0016442 "RNA-induced silencing
complex" evidence=IEA;ISO] [GO:0033962 "cytoplasmic mRNA processing
body assembly" evidence=IEA;ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1564560
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CH473975 GO:GO:0008026
GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 OrthoDB:EOG4J1182 CTD:1656
IPI:IPI00558056 RefSeq:NP_001102762.1 UniGene:Rn.231713
Ensembl:ENSRNOT00000017391 GeneID:500988 KEGG:rno:500988
UCSC:RGD:1564560 NextBio:707903 Uniprot:D3ZD73
Length = 483
Score = 154 (59.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 78/328 (23%), Positives = 145/328 (44%)
Query: 96 QQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR-----EGI-ALVVSPLLSL-IQDQV 148
Q+E I LSGRD+L G GKS Y +P + R + I A+V+ P L +Q
Sbjct: 123 QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQ 182
Query: 149 MCLAALGIPAHM----LTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKI-SKSKRFMSK 203
+C+ + HM + +TT + + + + + + ++ TP +I K+ ++K
Sbjct: 183 ICIQ---VSKHMGGAKVMATTGGTN---LRDDIMRLDDTVHVVIATPGRILDLIKKGVAK 236
Query: 204 LEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALT-ATATQKVQ 262
++ H + +I +DEA DF +++ + + + + + T + QK
Sbjct: 237 VD---H---VQMIVLDEAD--KLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFM 288
Query: 263 NDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYC 322
N ++ + ++ ++ + V E+ V ++ + +Q + I++C
Sbjct: 289 NSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVH--CLNTLFSRLQIN-----QSIIFC 341
Query: 323 FSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKP 382
S + E +A+++ Q G S Y HA M R +V + + +V T F GI+
Sbjct: 342 NSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQ 401
Query: 383 DVRFVIHHSLSKSVETYYQESGRAGRDG 410
V VI+ K ETY GR+GR G
Sbjct: 402 AVNVVINFDFPKLAETYLHRIGRSGRFG 429
>ZFIN|ZDB-GENE-070912-83 [details] [associations]
symbol:ddx6 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
6" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-070912-83 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00530000063986 InterPro:IPR014014 PROSITE:PS51195
EMBL:CR759774 IPI:IPI00505165 ProteinModelPortal:E7FD91
Ensembl:ENSDART00000087382 Bgee:E7FD91 Uniprot:E7FD91
Length = 485
Score = 154 (59.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 82/329 (24%), Positives = 142/329 (43%)
Query: 96 QQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR-----EGI--ALVVSPLLSL-IQDQ 147
Q+E I LSGRD+L G GKS Y +P + R + I A+V+ P L +Q
Sbjct: 124 QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDSIQAAVVIVPTRELALQVS 183
Query: 148 VMCLAALGIPAHM----LTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKI-SKSKRFMS 202
+C+ + HM + +TT + + L++ + ++ TP +I K+ ++
Sbjct: 184 QICIQ---VSKHMGGVKVMATTGGTNLRDDIMRLDE---TVHVVIATPGRILDLIKKGVA 237
Query: 203 KLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKN-LGILKTQFPDVPMMALTATATQKV 261
K+ G++ +I +DEA DF + L L Q + A + QK
Sbjct: 238 KV------GQVQMIVLDEAD--KLLSQDFVQMMEEILSSLSKQRQILLYSATFPLSVQKF 289
Query: 262 QNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVY 321
N ++ + ++ ++ + V E+ V ++ + +Q + I++
Sbjct: 290 MNSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVH--CLNTLFSRLQIN-----QSIIF 342
Query: 322 CFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINK 381
C S + E +A+++ Q G S Y HA M R +V + + +V T F GI+
Sbjct: 343 CNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDI 402
Query: 382 PDVRFVIHHSLSKSVETYYQESGRAGRDG 410
V VI+ K ETY GR+GR G
Sbjct: 403 QAVNVVINFDFPKLGETYLHRIGRSGRFG 431
>DICTYBASE|DDB_G0274325 [details] [associations]
symbol:ddx52 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006200 "ATP
catabolic process" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0274325 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000151_GR GO:GO:0016887 GO:GO:0003723
EMBL:AAFI02000012 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 KO:K14779 RefSeq:XP_643949.1
ProteinModelPortal:Q86IZ9 EnsemblProtists:DDB0234211 GeneID:8619377
KEGG:ddi:DDB_G0274325 OMA:NGITSHE Uniprot:Q86IZ9
Length = 668
Score = 156 (60.0 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 74/365 (20%), Positives = 161/365 (44%)
Query: 84 LNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVL------REGI-ALV 136
+N G Q ++I +L R+V+ I G GK+ + +P + +EG +++
Sbjct: 214 INEIGYKEPSPIQMQVIPILLKEREVVAIAPTGSGKTASFSIPILQALYEPKKEGFRSVI 273
Query: 137 VSPLLSLIQD--QVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKI 194
++P L Q + L + G P + + + ++ ++ + +L TP ++
Sbjct: 274 IAPTRELAQQIYRNFRLLSKGKPFRICVLSKNLHNQSTNENLIKNYD----ILITTPLRL 329
Query: 195 SKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALT 254
++ K E ++ + DEA + +F+ + ++ + Q P + + +
Sbjct: 330 V----YLIK-ENLLSLNKVEYLVFDEAD--KLFDKNFQ-EQVDIVVTACQNPKLKICLFS 381
Query: 255 ATATQKVQNDLMEMLHIRKCIKFVS--------TINRPNLFYMVREKSSVGKVVIDEIAK 306
AT Q+V+ +L + ++ IK + T+++ L Y+ +E+ GK++ + +
Sbjct: 382 ATMNQQVE-ELGHSI-MKNPIKIIIGEQNAAAITVDQ-KLIYVGKEE---GKLLA--VRQ 433
Query: 307 YIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKL 366
IQ+ +++ S++ + QEL GI+ D H++ R+ + ++ K+
Sbjct: 434 LIQKGL--EPPILIFTQSKERAHDLFQELIFDGINVDVIHSERTQFQRDTIVKKFRMGKI 491
Query: 367 QVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPR 426
V++ T G++ V FVI+ ++ +Y GR GR G P + AD P
Sbjct: 492 WVLICTELMARGMDFKGVNFVINFDFPHTLASYIHRIGRTGRAGRPGVAYTLYTDADTPM 551
Query: 427 QSSMV 431
++V
Sbjct: 552 LPTIV 556
>DICTYBASE|DDB_G0281925 [details] [associations]
symbol:DDB_G0281925 "DEAD/DEAH box helicase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0281925 GO:GO:0005524 GO:GO:0003676
EMBL:AAFI02000043 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 RefSeq:XP_640502.1
ProteinModelPortal:Q54T87 PRIDE:Q54T87 EnsemblProtists:DDB0304645
GeneID:8623317 KEGG:ddi:DDB_G0281925 InParanoid:Q54T87 OMA:SWGNRDN
Uniprot:Q54T87
Length = 586
Score = 155 (59.6 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 77/334 (23%), Positives = 141/334 (42%)
Query: 103 VLSGRDVLVIMAAGGGKSLCYQLPAVLR------------EGIALVVSPLLSLIQD-QVM 149
+L G D++ + A G GK+L + LPA+L+ + LV++P L Q + +
Sbjct: 144 ILGGNDLVGLAATGSGKTLAFLLPALLKIISLPKRPSYGATPLVLVMAPTRELAQQIEEV 203
Query: 150 CLAAL-GIPAHMLTST--TSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEK 206
C ++ G L + K D+ I L G + ++ TP +++ L K
Sbjct: 204 CKTSIRGTSIRQLCAYGGLGKIDQSRI---LRNG---VDIVIGTPGRLN------DLLRK 251
Query: 207 CHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLM 266
HH + + +DEA G F P ++L Q P L +AT + L+
Sbjct: 252 -HHLSSVQYLVLDEADRMLDMG--FMPQIESL---IDQIPK-ERQTLMFSATWPKEVKLL 304
Query: 267 EMLHIRKCIKFV-------STINRPNLFYMVREKSSVGK--VVIDEIAKYIQESYPNSES 317
++ IK +IN + + S + ++ DEI K + N+
Sbjct: 305 ASKFLKDPIKITVGSQELTGSINVTQHIVNIDDLSDLQSDDLIYDEINKILTADPTNTV- 363
Query: 318 GIVYCFSRKECEQVAQELR-QRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFG 376
IV+C + +C+ L Q+ + + H+ D RE + +++++++ T
Sbjct: 364 -IVFCNEKYKCDDFQHYLSTQKNVKSIVLHSGKDQRMRESGLKLFRDHRIRILIATDVAA 422
Query: 377 MGINKPDVRFVIHHSLSKSVETYYQESGRAGRDG 410
G++ P V+ V ++ L ++E Y GR GR G
Sbjct: 423 RGLDIPSVKAVFNYRLPGNIEDYVHRIGRTGRAG 456
>UNIPROTKB|Q81QF0 [details] [associations]
symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 153 (58.9 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 77/345 (22%), Positives = 140/345 (40%)
Query: 88 GIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQ 147
GI Q++ I +LSG+D++ G GK+L + LP + E I S + +LI
Sbjct: 24 GITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL--EKIDPESSDVQALIVAP 81
Query: 148 VMCLAALGIPAHMLTSTTSKEDEKF--IYKALEKGEGELKMLYVTPEKISKSKRFMSKLE 205
LA L I + +ED IY + + K+ T ++ R + +
Sbjct: 82 TRELA-LQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNTHIVVATPGRLLDHIR 140
Query: 206 K-CHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQN- 263
+ LS I +DEA +G F D ++ IL M +AT + ++
Sbjct: 141 RETIDLSNLSTIVLDEADQMLYFG--FLYDIED--ILDETPGSKQTMLFSATIPKDIKKL 196
Query: 264 -----DLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESG 318
D +M+ ++ V TI + + R K + V+D ++
Sbjct: 197 AKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPFL---------A 247
Query: 319 IVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMG 378
+++C ++ ++ L+ G + H D+ RE+V + + K+Q ++ T G
Sbjct: 248 VIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARG 307
Query: 379 INKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPAD 423
++ V V ++ + + VE+Y GR GR G + F D
Sbjct: 308 LDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKD 352
>TIGR_CMR|BA_2475 [details] [associations]
symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 153 (58.9 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 77/345 (22%), Positives = 140/345 (40%)
Query: 88 GIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQ 147
GI Q++ I +LSG+D++ G GK+L + LP + E I S + +LI
Sbjct: 24 GITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL--EKIDPESSDVQALIVAP 81
Query: 148 VMCLAALGIPAHMLTSTTSKEDEKF--IYKALEKGEGELKMLYVTPEKISKSKRFMSKLE 205
LA L I + +ED IY + + K+ T ++ R + +
Sbjct: 82 TRELA-LQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNTHIVVATPGRLLDHIR 140
Query: 206 K-CHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQN- 263
+ LS I +DEA +G F D ++ IL M +AT + ++
Sbjct: 141 RETIDLSNLSTIVLDEADQMLYFG--FLYDIED--ILDETPGSKQTMLFSATIPKDIKKL 196
Query: 264 -----DLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESG 318
D +M+ ++ V TI + + R K + V+D ++
Sbjct: 197 AKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPFL---------A 247
Query: 319 IVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMG 378
+++C ++ ++ L+ G + H D+ RE+V + + K+Q ++ T G
Sbjct: 248 VIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARG 307
Query: 379 INKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPAD 423
++ V V ++ + + VE+Y GR GR G + F D
Sbjct: 308 LDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKD 352
>UNIPROTKB|F8WFX2 [details] [associations]
symbol:Eif4a2 "Eukaryotic initiation factor 4A-II"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1309225 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00530000062880
OMA:TENDARQ IPI:IPI00193595 ProteinModelPortal:F8WFX2 PRIDE:F8WFX2
Ensembl:ENSRNOT00000002484 Uniprot:F8WFX2
Length = 408
Score = 152 (58.6 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 91/379 (24%), Positives = 156/379 (41%)
Query: 68 NWSGTFEWDSRADDVRLN---VFGIPAY-----RANQQEIINAVLSGRDVLVIMAAGGGK 119
NW+ E DD+ L + GI AY A QQ I + G DV+ +G GK
Sbjct: 28 NWN---EIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGK 84
Query: 120 ------SLCYQLPAVLREGIALVVSPLLSLIQD-QVMCLAA---LGIPAHMLTSTTSKED 169
S+ QL +E ALV++P L Q Q + LA +G H T+ +
Sbjct: 85 TATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN 144
Query: 170 EKFIYKALEKGEGELKMLYV-TPEKISK--SKRFMSKLEKCHHAGRLSLISIDEAHCCSQ 226
E ++K + E + V TP ++ ++R++S K + + +DEA
Sbjct: 145 E------MQKLQAEAPHIVVGTPGRVFDMLNRRYLSP--KW-----IKMFVLDEAD--EM 189
Query: 227 WGHDFRPD-YKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVS-TINRP 284
F+ Y+ L T V + A T +V M IR +K T+
Sbjct: 190 LSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRD-PIRILVKKEELTLEGI 248
Query: 285 NLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADY 344
FY+ E+ K +D + + E+ +++ +++ +R++ + + +++ R +
Sbjct: 249 KQFYINVEREE-WK--LDTLCD-LYETLTITQA-VIFLNTRRKVDWLTEKMHARDFTVSA 303
Query: 345 YHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESG 404
H DMD R+ + + +V++ T GI+ V VI++ L + E Y G
Sbjct: 304 LHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIG 363
Query: 405 RAGRDGLPSECLLFFRPAD 423
R GR G + F D
Sbjct: 364 RGGRFGRKGVAINFVTEED 382
>CGD|CAL0006152 [details] [associations]
symbol:DHH1 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IEA] [GO:0030996 "cell cycle arrest
in response to nitrogen starvation" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IEA] [GO:0000753 "cell
morphogenesis involved in conjugation with cellular fusion"
evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0000290 "deadenylation-dependent
decapping of nuclear-transcribed mRNA" evidence=IEA] [GO:0031142
"induction of conjugation upon nitrogen starvation" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0006152 GO:GO:0005524 GO:GO:0006417
GO:GO:0006397 GO:GO:0003723 GO:GO:0000932 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0008026 EMBL:AACQ01000038 EMBL:AACQ01000037 eggNOG:COG0513
KO:K12614 InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_718704.1
RefSeq:XP_718788.1 ProteinModelPortal:Q5AAW3 SMR:Q5AAW3
GeneID:3639490 GeneID:3639628 KEGG:cal:CaO19.13577
KEGG:cal:CaO19.6197 Uniprot:Q5AAW3
Length = 549
Score = 154 (59.3 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 80/327 (24%), Positives = 140/327 (42%)
Query: 96 QQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAV------LREGIALVVSPLLSLIQDQVM 149
Q+E I L+GRD+L G GK+ + +P + L + AL++ P L
Sbjct: 57 QEESIPMALAGRDILARAKNGTGKTASFIIPCLQLVKPKLNKVQALILVPTRELALQTSQ 116
Query: 150 CLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKI-SKSKRFMSKLEKCH 208
+ LG H+ T + + + + +L TP ++ + R + L +C
Sbjct: 117 VVRTLG--KHVGTQCMVTTGGTSLRDDIVRLHDPVHILVGTPGRVLDLAARKVVDLSEC- 173
Query: 209 HAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEM 268
L +DEA +F+ + IL+ P+ + +AT V++ M+
Sbjct: 174 -----PLFVMDEAD--KMLSREFKGIIEQ--ILEFFPPNRQALLFSATFPLAVKS-FMDK 223
Query: 269 LHIRKC--IKFVS--TINRPNLFY-MVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCF 323
H+ K I + T+ + FY V EK + ++ + +Q + I++C
Sbjct: 224 -HLTKPYEINLMDELTLKGISQFYAFVEEKQKLH--CLNTLFSKLQIN-----QSIIFCN 275
Query: 324 SRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPD 383
S E +A+++ + G S Y HA M AR KV + + K++ +V + GI+
Sbjct: 276 STNRVELLAKKITELGYSCYYSHAKMPQQARNKVFHEFRQGKVRNLVCSDLLTRGIDIQA 335
Query: 384 VRFVIHHSLSKSVETYYQESGRAGRDG 410
V VI+ K+ ETY GR+GR G
Sbjct: 336 VNVVINFDFPKTAETYLHRIGRSGRFG 362
>UNIPROTKB|Q5AAW3 [details] [associations]
symbol:DHH1 "ATP-dependent RNA helicase DHH1"
species:237561 "Candida albicans SC5314" [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0006152 GO:GO:0005524
GO:GO:0006417 GO:GO:0006397 GO:GO:0003723 GO:GO:0000932
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0008026 EMBL:AACQ01000038 EMBL:AACQ01000037
eggNOG:COG0513 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_718704.1 RefSeq:XP_718788.1 ProteinModelPortal:Q5AAW3
SMR:Q5AAW3 GeneID:3639490 GeneID:3639628 KEGG:cal:CaO19.13577
KEGG:cal:CaO19.6197 Uniprot:Q5AAW3
Length = 549
Score = 154 (59.3 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 80/327 (24%), Positives = 140/327 (42%)
Query: 96 QQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAV------LREGIALVVSPLLSLIQDQVM 149
Q+E I L+GRD+L G GK+ + +P + L + AL++ P L
Sbjct: 57 QEESIPMALAGRDILARAKNGTGKTASFIIPCLQLVKPKLNKVQALILVPTRELALQTSQ 116
Query: 150 CLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKI-SKSKRFMSKLEKCH 208
+ LG H+ T + + + + +L TP ++ + R + L +C
Sbjct: 117 VVRTLG--KHVGTQCMVTTGGTSLRDDIVRLHDPVHILVGTPGRVLDLAARKVVDLSEC- 173
Query: 209 HAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEM 268
L +DEA +F+ + IL+ P+ + +AT V++ M+
Sbjct: 174 -----PLFVMDEAD--KMLSREFKGIIEQ--ILEFFPPNRQALLFSATFPLAVKS-FMDK 223
Query: 269 LHIRKC--IKFVS--TINRPNLFY-MVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCF 323
H+ K I + T+ + FY V EK + ++ + +Q + I++C
Sbjct: 224 -HLTKPYEINLMDELTLKGISQFYAFVEEKQKLH--CLNTLFSKLQIN-----QSIIFCN 275
Query: 324 SRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPD 383
S E +A+++ + G S Y HA M AR KV + + K++ +V + GI+
Sbjct: 276 STNRVELLAKKITELGYSCYYSHAKMPQQARNKVFHEFRQGKVRNLVCSDLLTRGIDIQA 335
Query: 384 VRFVIHHSLSKSVETYYQESGRAGRDG 410
V VI+ K+ ETY GR+GR G
Sbjct: 336 VNVVINFDFPKTAETYLHRIGRSGRFG 362
>ZFIN|ZDB-GENE-040426-915 [details] [associations]
symbol:eif4a3 "eukaryotic translation initiation
factor 4A, isoform 3" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-040426-915
GO:GO:0005524 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
GO:GO:0008380 GO:GO:0016607 GO:GO:0006397 GO:GO:0003723
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025 CTD:9775
OrthoDB:EOG4229JV EMBL:BC045939 IPI:IPI00481285 RefSeq:NP_957372.1
UniGene:Dr.78203 ProteinModelPortal:Q7ZVA6 SMR:Q7ZVA6 STRING:Q7ZVA6
PRIDE:Q7ZVA6 GeneID:394053 KEGG:dre:394053 InParanoid:Q7ZVA6
NextBio:20815014 ArrayExpress:Q7ZVA6 Uniprot:Q7ZVA6
Length = 406
Score = 123 (48.4 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 22/106 (20%), Positives = 52/106 (49%)
Query: 319 IVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMG 378
+++C ++++ + + +++R+ + H DM RE + + +V++ T + G
Sbjct: 276 VIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARG 335
Query: 379 INKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADV 424
++ V +I++ L + E Y GR+GR G + F + D+
Sbjct: 336 LDVSQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDI 381
Score = 75 (31.5 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 27/85 (31%), Positives = 39/85 (45%)
Query: 78 RADDVR-LNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKS--LCYQ----LPAVLR 130
R D +R + +G A QQ I ++ GRDV+ +G GK+ C L +R
Sbjct: 41 REDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVR 100
Query: 131 EGIALVVSPLLSLIQDQVMCLAALG 155
E AL+++P L L ALG
Sbjct: 101 ETQALILAPTRELAGQIQKVLLALG 125
>FB|FBgn0036104 [details] [associations]
symbol:CG6418 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE014296 GO:GO:0006200
GO:GO:0003676 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 KO:K12835 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AY061400 RefSeq:NP_648413.1
UniGene:Dm.922 SMR:Q9VTC1 IntAct:Q9VTC1 MINT:MINT-311970
STRING:Q9VTC1 EnsemblMetazoa:FBtr0076274 GeneID:39218
KEGG:dme:Dmel_CG6418 UCSC:CG6418-RB FlyBase:FBgn0036104
InParanoid:Q9VTC1 OrthoDB:EOG4KKWJ0 ChiTaRS:CG6418 GenomeRNAi:39218
NextBio:812543 Uniprot:Q9VTC1
Length = 791
Score = 156 (60.0 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 75/336 (22%), Positives = 147/336 (43%)
Query: 96 QQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAV--------LREG---IALVVSPL--LS 142
Q + + LSGRD++ I G GK+ + P + L+ G I L+++P LS
Sbjct: 296 QAQAVPTALSGRDIIGIAKTGSGKTAAFIWPMLMHVMDQKQLKPGDGPIGLILAPTRELS 355
Query: 143 L-IQDQVMCLAAL-GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRF 200
L I ++ + + SK ++ KALE+G +++ TP ++
Sbjct: 356 LQIYNEAKKFGKVYNLNVVCCYGGGSKWEQS---KALEQGA---EIIVATPGRMID---- 405
Query: 201 MSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQK 260
M K+ K + R++ + +DEA G F P ++ I PD + +AT ++
Sbjct: 406 MVKM-KATNLRRVTFLVLDEADRMFHMG--FEPQVRS--ICNHVRPDRQCLMFSATFKKR 460
Query: 261 VQNDLMEMLHIRKCIKFVS-TINRPNL-----FYMVREKSSVGKVVIDEIAKYIQESYPN 314
++ ++L ++ V +N N Y+ ++ + K++ E
Sbjct: 461 IERLARDVLS--DPVRIVQGDLNEANQDITQSVYVFPNPLQKWNWLLCHLVKFLSEG--- 515
Query: 315 SESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVA 374
S +++ + + E V+ L + + H DMD R KV ++ + + ++V T
Sbjct: 516 --SVLIFVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQFKRKECDILVATDV 573
Query: 375 FGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDG 410
G++ P +R V+++ ++ +ET+ GR GR G
Sbjct: 574 AARGLDIPHIRNVVNYDTARDIETHTHRIGRTGRAG 609
>WB|WBGene00000479 [details] [associations]
symbol:cgh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0051729 "germline cell cycle switching, mitotic
to meiotic cell cycle" evidence=IMP] [GO:0008219 "cell death"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0010467 "gene expression" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0043066 "negative
regulation of apoptotic process" evidence=IMP] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0043186 "P granule" evidence=IDA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IDA] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0017148 "negative regulation of translation"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040007
GO:GO:0006915 GO:GO:0010467 GO:GO:0016071 GO:GO:0043066
GO:GO:0030154 GO:GO:0007052 GO:GO:0002119 GO:GO:0017148
GO:GO:0048477 GO:GO:0007283 GO:GO:0051729 GO:GO:0003723
GO:GO:0040035 GO:GO:0000932 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026 EMBL:FO080423
RefSeq:NP_498646.1 ProteinModelPortal:Q95YF3 SMR:Q95YF3
DIP:DIP-25457N IntAct:Q95YF3 MINT:MINT-250782 STRING:Q95YF3
PaxDb:Q95YF3 EnsemblMetazoa:C07H6.5.1 EnsemblMetazoa:C07H6.5.2
GeneID:176061 KEGG:cel:CELE_C07H6.5 UCSC:C07H6.5.1 CTD:176061
WormBase:C07H6.5 eggNOG:COG0513 GeneTree:ENSGT00530000063986
HOGENOM:HOG000268797 InParanoid:Q95YF3 KO:K12614 OMA:YSHARMK
NextBio:890944 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
Uniprot:Q95YF3
Length = 430
Score = 152 (58.6 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 78/330 (23%), Positives = 145/330 (43%)
Query: 96 QQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAV------LREGIALVVSPLLSL-IQDQV 148
Q+ I L+G+D+L G GK+ Y +P + L+ A+V+ P L +Q
Sbjct: 70 QEASIGVALTGQDILARAKNGTGKTGAYCIPVIEKIQPALKAIQAMVIVPTRELALQTSQ 129
Query: 149 MCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKI-SKSKRFMSKLEKC 207
+C+ + TT D + + + G + ++ TP +I ++ ++K+E C
Sbjct: 130 ICVELSKHIQLKVMVTTGGTD---LRDDIMRLNGTVHLVIATPGRILDLMEKGVAKMEHC 186
Query: 208 HHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVP----MMALTATATQKVQN 263
+L+ +DEA DF+ GIL +P +M +AT V +
Sbjct: 187 K-----TLV-LDEAD--KLLSQDFQ------GILDRLINFLPKERQVMLYSATFPNTVTS 232
Query: 264 DLMEMLHIRKCIKFVS--TINRPNLFY-MVREKSSVGKVVIDEIAKYIQESYPNSESGIV 320
+ + +H I + T+ +Y V+EK V ++ + + +Q + I+
Sbjct: 233 FMQKHMHKPYEINLMEELTLLGVTQYYAFVQEKQKVH--CLNTLFRKLQIN-----QSII 285
Query: 321 YCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGIN 380
+C S + E +A+++ + G S Y H+ M N R +V + + + +V + GI+
Sbjct: 286 FCNSTQRVELLAKKITEIGYSCYYIHSKMAQNHRNRVFHDFRQGNCRNLVCSDLLTRGID 345
Query: 381 KPDVRFVIHHSLSKSVETYYQESGRAGRDG 410
V VI+ ++ ETY GR+GR G
Sbjct: 346 IQAVNVVINFDFPRNAETYLHRIGRSGRFG 375
>UNIPROTKB|Q95YF3 [details] [associations]
symbol:cgh-1 "ATP-dependent RNA helicase cgh-1"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040007
GO:GO:0006915 GO:GO:0010467 GO:GO:0016071 GO:GO:0043066
GO:GO:0030154 GO:GO:0007052 GO:GO:0002119 GO:GO:0017148
GO:GO:0048477 GO:GO:0007283 GO:GO:0051729 GO:GO:0003723
GO:GO:0040035 GO:GO:0000932 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026 EMBL:FO080423
RefSeq:NP_498646.1 ProteinModelPortal:Q95YF3 SMR:Q95YF3
DIP:DIP-25457N IntAct:Q95YF3 MINT:MINT-250782 STRING:Q95YF3
PaxDb:Q95YF3 EnsemblMetazoa:C07H6.5.1 EnsemblMetazoa:C07H6.5.2
GeneID:176061 KEGG:cel:CELE_C07H6.5 UCSC:C07H6.5.1 CTD:176061
WormBase:C07H6.5 eggNOG:COG0513 GeneTree:ENSGT00530000063986
HOGENOM:HOG000268797 InParanoid:Q95YF3 KO:K12614 OMA:YSHARMK
NextBio:890944 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
Uniprot:Q95YF3
Length = 430
Score = 152 (58.6 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 78/330 (23%), Positives = 145/330 (43%)
Query: 96 QQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAV------LREGIALVVSPLLSL-IQDQV 148
Q+ I L+G+D+L G GK+ Y +P + L+ A+V+ P L +Q
Sbjct: 70 QEASIGVALTGQDILARAKNGTGKTGAYCIPVIEKIQPALKAIQAMVIVPTRELALQTSQ 129
Query: 149 MCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKI-SKSKRFMSKLEKC 207
+C+ + TT D + + + G + ++ TP +I ++ ++K+E C
Sbjct: 130 ICVELSKHIQLKVMVTTGGTD---LRDDIMRLNGTVHLVIATPGRILDLMEKGVAKMEHC 186
Query: 208 HHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVP----MMALTATATQKVQN 263
+L+ +DEA DF+ GIL +P +M +AT V +
Sbjct: 187 K-----TLV-LDEAD--KLLSQDFQ------GILDRLINFLPKERQVMLYSATFPNTVTS 232
Query: 264 DLMEMLHIRKCIKFVS--TINRPNLFY-MVREKSSVGKVVIDEIAKYIQESYPNSESGIV 320
+ + +H I + T+ +Y V+EK V ++ + + +Q + I+
Sbjct: 233 FMQKHMHKPYEINLMEELTLLGVTQYYAFVQEKQKVH--CLNTLFRKLQIN-----QSII 285
Query: 321 YCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGIN 380
+C S + E +A+++ + G S Y H+ M N R +V + + + +V + GI+
Sbjct: 286 FCNSTQRVELLAKKITEIGYSCYYIHSKMAQNHRNRVFHDFRQGNCRNLVCSDLLTRGID 345
Query: 381 KPDVRFVIHHSLSKSVETYYQESGRAGRDG 410
V VI+ ++ ETY GR+GR G
Sbjct: 346 IQAVNVVINFDFPRNAETYLHRIGRSGRFG 375
>UNIPROTKB|I3LJA0 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:NVMKQSG
EMBL:FP565631 EMBL:FP312903 Ensembl:ENSSSCT00000024730
Uniprot:I3LJA0
Length = 507
Score = 153 (58.9 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 80/349 (22%), Positives = 148/349 (42%)
Query: 96 QQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR------EGI-ALVVSP---LLSLIQ 145
Q + I +L GR++L G GK+L + +P +++ +G ALV+SP L S I
Sbjct: 100 QMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPTNKGFRALVISPTRELASQIH 159
Query: 146 DQVMCLA-ALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKL 204
+++ ++ G HM+ +KF K+ +K + +L TP ++ ++ K
Sbjct: 160 RELVKISEGTGFRIHMIHKAAVAA-KKFGPKSSKKFD----ILVTTPNRLI----YLLKQ 210
Query: 205 EKCH-HAGRLSLISIDEAHCCSQWGHD-FRPDYKNLGILKTQFPDVPMMALTATATQKVQ 262
+ + + +DE+ + G FR ++ + T V +AT V+
Sbjct: 211 DPPGIDLTSVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHK-VKRAMFSATFAYDVE 269
Query: 263 N------DLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSE 316
D + + I V T+ + LF S GK++ + + +++ + +
Sbjct: 270 QWCKLNLDNVITVSIGARNSAVETVEQELLFV----GSETGKLLA--MRELVKKGF--NP 321
Query: 317 SGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFG 376
+V+ S + +++ EL GI+ D HAD R+ + K+ V++ T
Sbjct: 322 PVLVFVQSIERAKELFHELIYEGINVDVIHADRTQQQRDNTVHSFRAGKIWVLICTALLA 381
Query: 377 MGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVP 425
GI+ V VI++ S Y GR GR G + + FF D P
Sbjct: 382 RGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGHKGKAVTFFTEDDKP 430
>UNIPROTKB|Q8EHT1 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 152 (58.6 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 84/338 (24%), Positives = 144/338 (42%)
Query: 96 QQEIINAVLSGRDVLVIMAAGGGKSLCYQLPA--VLREGIAL--------VVSPL-LSLI 144
QQ I A+L+GRD+L + G GK+ + LP +L + IA+ PL L L+
Sbjct: 43 QQLAIPAILAGRDLLALSQTGSGKTFAFGLPLLQILWQQIAVQTTAKSVPAAKPLALVLV 102
Query: 145 QDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKG---EGELKMLYVTPEKISKSK-RF 200
+ + L + H L S S I + L G E +L L P+ + + R
Sbjct: 103 PTRELALQ-VSEALHALASQLSTSAPLNI-QLLCGGVALEQQLADLSAKPQLVVATPGRL 160
Query: 201 MSKLEKCHHA-GRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQ------FPDVPMMAL 253
+ + H + + + +DEA + G F PD + L + + F AL
Sbjct: 161 LDLCTQSHISLDAIKHLVLDEADRLLEMG--FWPDMQKLMAMMPKRKQTLLFSATLPEAL 218
Query: 254 TATATQKVQNDLMEM-LHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESY 312
+ A + + ND +++ R + V I Y+V K S + +I + +Y +
Sbjct: 219 DSLAGKLLTNDPLKVEASTRNAV--VGEIEEQ--LYLVN-KGSKAQALIALLKQY---QW 270
Query: 313 PNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGT 372
P +V+ +R + + +A+ L + GI+A H + D R + + +++QV+V T
Sbjct: 271 PQV---LVFISARDDADAIAKRLVKAGINAAALHGEKDQTVRSQTLADFKADRIQVLVAT 327
Query: 373 VAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDG 410
GI+ + VI+ L S Y GR R G
Sbjct: 328 DLMARGIHVDALPVVINLDLPTSAPVYVHRIGRTARAG 365
>TIGR_CMR|SO_1136 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 152 (58.6 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 84/338 (24%), Positives = 144/338 (42%)
Query: 96 QQEIINAVLSGRDVLVIMAAGGGKSLCYQLPA--VLREGIAL--------VVSPL-LSLI 144
QQ I A+L+GRD+L + G GK+ + LP +L + IA+ PL L L+
Sbjct: 43 QQLAIPAILAGRDLLALSQTGSGKTFAFGLPLLQILWQQIAVQTTAKSVPAAKPLALVLV 102
Query: 145 QDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKG---EGELKMLYVTPEKISKSK-RF 200
+ + L + H L S S I + L G E +L L P+ + + R
Sbjct: 103 PTRELALQ-VSEALHALASQLSTSAPLNI-QLLCGGVALEQQLADLSAKPQLVVATPGRL 160
Query: 201 MSKLEKCHHA-GRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQ------FPDVPMMAL 253
+ + H + + + +DEA + G F PD + L + + F AL
Sbjct: 161 LDLCTQSHISLDAIKHLVLDEADRLLEMG--FWPDMQKLMAMMPKRKQTLLFSATLPEAL 218
Query: 254 TATATQKVQNDLMEM-LHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESY 312
+ A + + ND +++ R + V I Y+V K S + +I + +Y +
Sbjct: 219 DSLAGKLLTNDPLKVEASTRNAV--VGEIEEQ--LYLVN-KGSKAQALIALLKQY---QW 270
Query: 313 PNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGT 372
P +V+ +R + + +A+ L + GI+A H + D R + + +++QV+V T
Sbjct: 271 PQV---LVFISARDDADAIAKRLVKAGINAAALHGEKDQTVRSQTLADFKADRIQVLVAT 327
Query: 373 VAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDG 410
GI+ + VI+ L S Y GR R G
Sbjct: 328 DLMARGIHVDALPVVINLDLPTSAPVYVHRIGRTARAG 365
>UNIPROTKB|F1RZ83 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9823 "Sus scrofa" [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0045727 "positive regulation of
translation" evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 OMA:EDWKFDT
EMBL:CU655945 Ensembl:ENSSSCT00000018679 ArrayExpress:F1RZ83
Uniprot:F1RZ83
Length = 411
Score = 131 (51.2 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 23/106 (21%), Positives = 53/106 (50%)
Query: 319 IVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMG 378
+++C ++++ + + +++R+ + H DM RE + + +V++ T + G
Sbjct: 281 VIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARG 340
Query: 379 INKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADV 424
++ P V +I++ L + E Y GR+GR G + F + D+
Sbjct: 341 LDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDI 386
Score = 66 (28.3 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 25/85 (29%), Positives = 40/85 (47%)
Query: 78 RADDVR-LNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAV------LR 130
R D +R + +G P A QQ I V+ + +VI +G GK+ + + + +R
Sbjct: 46 REDLLRGIYAYGRPEPGAFQQRKILVVMKSNNAVVISQSGTGKTATFSISVLQCLDIQVR 105
Query: 131 EGIALVVSPLLSLIQDQVMCLAALG 155
E AL+++P L L ALG
Sbjct: 106 ETQALILAPTRELAVQIQKGLLALG 130
>POMBASE|SPAC1F5.10 [details] [associations]
symbol:SPAC1F5.10 "ATP-dependent RNA helicase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC1F5.10 GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 KO:K13025 OMA:EDWKFDT
OrthoDB:EOG4HTD1W PIR:T38085 RefSeq:NP_592863.1
ProteinModelPortal:Q10055 SMR:Q10055 PRIDE:Q10055
EnsemblFungi:SPAC1F5.10.1 GeneID:2541602 KEGG:spo:SPAC1F5.10
NextBio:20802696 Uniprot:Q10055
Length = 394
Score = 151 (58.2 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 81/382 (21%), Positives = 168/382 (43%)
Query: 61 SSSTAVENWSGTFEWDSRADDVR-LNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGK 119
++S V S E + + D +R + +G A Q I + GRDV+ +G GK
Sbjct: 12 TTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGK 71
Query: 120 SLCYQLPAV------LREGIALVVSPLLSL---IQDQVMCLAA-LGIPAHMLTSTTSKED 169
+ + + + +R+ AL++SP L IQ+ V+ L + + H TS +
Sbjct: 72 TATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGN 131
Query: 170 EKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGH 229
+ K L+ G+ ++ TP +++ R + + + ++ +DEA G
Sbjct: 132 D---IKKLDYGQ---HVVSGTPGRVTDMIRRRNLRTR-----NVKMLILDEADELLNQG- 179
Query: 230 DFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLH------IRKCIKFVS-TIN 282
F+ + I + P ++ ++AT Q D++EM + +R +K T+
Sbjct: 180 -FKEQIYD--IYRYLPPGTQVVVVSATLPQ----DVLEMTNKFTTNPVRILVKRDELTLE 232
Query: 283 RPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISA 342
+++ EK K D + + ++ +++ +++C SR++ + + +++R+ +
Sbjct: 233 GLKQYFIAVEKEE-WK--FDTLCD-LYDTLTITQA-VIFCNSRRKVDWLTEKMREANFTV 287
Query: 343 DYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQE 402
H +M R+ + + + +V++ T + GI+ V VI++ L + E Y
Sbjct: 288 TSMHGEMPQKERDAIMQDFRQGNSRVLICTDIWARGIDVQQVSLVINYDLPANRENYIHR 347
Query: 403 SGRAGRDGLPSECLLFFRPADV 424
GR+GR G + F DV
Sbjct: 348 IGRSGRFGRKGVAINFVTNEDV 369
>DICTYBASE|DDB_G0270396 [details] [associations]
symbol:ddx49 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0270396 GO:GO:0005524 EMBL:AAFI02000005
GenomeReviews:CM000150_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:FRNLCAI
RefSeq:XP_646762.1 HSSP:P60842 ProteinModelPortal:Q55BR9
PRIDE:Q55BR9 EnsemblProtists:DDB0234206 GeneID:8617735
KEGG:ddi:DDB_G0270396 ProtClustDB:CLSZ2846935 Uniprot:Q55BR9
Length = 508
Score = 154 (59.3 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 77/337 (22%), Positives = 137/337 (40%)
Query: 96 QQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAV--LRE---GI-ALVVSPLLSLIQDQVM 149
Q I +L GRD++ G GK+ + +P + L E G+ A++++P L
Sbjct: 31 QANTIPEILKGRDIIASAKTGSGKTASFAIPILNQLSEDPYGVFAVILTPTRELAVQIGE 90
Query: 150 CLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISK--SKRFMSKLEKC 207
A+G P ++ S + + +AL + ++ TP +++ + L+ C
Sbjct: 91 QFNAIGAPMNVNCSVVIGGIDN-VTQALILDKRP-HIIVATPGRLASHLNNGLKIALKFC 148
Query: 208 HHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLME 267
+ +DEA G DF + + IL+ P L +AT ++
Sbjct: 149 ------KFLVLDEAD--RLLGEDFELEIAS--ILEHLPPPEKRQTLLFSATMTKNLTKLD 198
Query: 268 MLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKE 327
+ + K F + + +E + D YI + + S S IV+ +
Sbjct: 199 SIALNKPFIFEDNSKYDTVDTLKQEYIYMPAPTKDCYLVYILKKHEGS-SAIVFVNNCYA 257
Query: 328 CEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFV 387
E V L + I + H+ +D +R + K++V+V T G++ PDV+ V
Sbjct: 258 VEAVKGMLNKLDIPSVSLHSFLDQKSRLAALKTFKSGKVKVLVATDVASRGLDIPDVQIV 317
Query: 388 IHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADV 424
I++ LS S + Y GR R G + F P DV
Sbjct: 318 INYKLSNSSKDYIHRVGRTARFGRSGRAISFITPHDV 354
Score = 44 (20.5 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 492 IQDN-NQRLTMLQLVDKMK--IKLKEIDSDLKREE 523
IQ+ ++ T + ++K I+ K+ID D+KR+E
Sbjct: 455 IQEQPSKSTTTTKSIEKKPTTIESKKIDKDIKRKE 489
Score = 43 (20.2 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 547 KKIIKLEISSVQKNTADNKKSTKRSLTSSALEFELDELRKE 587
K+I K++ K+T K K+ T + + + D RKE
Sbjct: 450 KEITKIQ-EQPSKSTTTTKSIEKKPTTIESKKIDKDIKRKE 489
Score = 43 (20.2 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 15/68 (22%), Positives = 32/68 (47%)
Query: 522 EEIEQLVLQLII---DRVLVRIGPFSPGKKIIKLEISSVQKNTADNKKSTKRSLTSSALE 578
EEI + L+L D V + S +KI+++ + ++ ++ T+R+ L+
Sbjct: 361 EEIIKKQLELYKTDDDEVFRHLKEASTARKIVEIHLDEIEFGVKQKERRTERNELQKQLK 420
Query: 579 FELDELRK 586
E++ K
Sbjct: 421 -EVNNKEK 427
>UNIPROTKB|A5D7C1 [details] [associations]
symbol:DDX52 "Probable ATP-dependent RNA helicase DDX52"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:BC140501 IPI:IPI00692860
RefSeq:NP_001096708.1 UniGene:Bt.51117 ProteinModelPortal:A5D7C1
SMR:A5D7C1 PRIDE:A5D7C1 Ensembl:ENSBTAT00000013622 GeneID:510826
KEGG:bta:510826 CTD:11056 GeneTree:ENSGT00550000074863
HOGENOM:HOG000242486 HOVERGEN:HBG051332 InParanoid:A5D7C1 KO:K14779
OMA:NVMKQSG OrthoDB:EOG4XKV6Q NextBio:20869637 ArrayExpress:A5D7C1
Uniprot:A5D7C1
Length = 596
Score = 153 (58.9 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 79/349 (22%), Positives = 147/349 (42%)
Query: 96 QQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR------EGI-ALVVSP---LLSLIQ 145
Q + I +L GR++L G GK+L + +P ++ +G AL++SP L S I
Sbjct: 190 QMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMHLKQPTNKGFRALIISPTRELASQIH 249
Query: 146 DQVMCLA-ALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKL 204
+++ L+ G HM+ +KF K+ +K + +L TP ++ ++ K
Sbjct: 250 RELVKLSEGTGFRIHMIHKAAVAA-KKFGPKSSKKFD----ILVTTPNRLI----YLLKQ 300
Query: 205 EKCH-HAGRLSLISIDEAHCCSQWGHD-FRPDYKNLGILKTQFPDVPMMALTATATQKVQ 262
+ + + +DE+ + G FR ++ + T V +AT V+
Sbjct: 301 DPPGIDLTSVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHK-VKRAMFSATFAYDVE 359
Query: 263 N------DLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSE 316
D + + + V T+ + LF S GK++ + + +++ + +
Sbjct: 360 QWCRLNLDSVITVSVGARNSAVETVEQELLFV----GSETGKLLA--MRELVKKGF--NP 411
Query: 317 SGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFG 376
+V+ S + +++ EL GI+ D HAD R+ + K+ V++ T
Sbjct: 412 PVLVFVQSIERAKELFHELIYEGINVDVIHADRTQQQRDNTVHSFRAGKIWVLICTALLA 471
Query: 377 MGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVP 425
GI+ V VI++ S Y GR GR G + + FF D P
Sbjct: 472 RGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGHKGKAVTFFTEDDKP 520
WARNING: HSPs involving 241 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.133 0.372 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 692 682 0.00079 121 3 11 22 0.40 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 491
No. of states in DFA: 621 (66 KB)
Total size of DFA: 335 KB (2169 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 67.88u 0.12s 68.00t Elapsed: 00:00:03
Total cpu time: 67.94u 0.12s 68.06t Elapsed: 00:00:03
Start: Fri May 10 17:44:03 2013 End: Fri May 10 17:44:06 2013
WARNINGS ISSUED: 2