BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035988
(692 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FT73|MED34_ARATH Mediator of RNA polymerase II transcription subunit 34
OS=Arabidopsis thaliana GN=MED34 PE=1 SV=1
Length = 705
Score = 919 bits (2376), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/721 (65%), Positives = 565/721 (78%), Gaps = 45/721 (6%)
Query: 1 METEEILQELENVEAEVRLVQEQIKQLVDRQDQLYERQSELKSLLEAFEASRGSPIQYGG 60
ME+E I ++L+N++ E++ VQ QI L++ QD+LYER+SELK+LL+A AS GSP+ G
Sbjct: 1 MESEAIQEDLQNLDVELKDVQGQISALIEHQDRLYERKSELKTLLKALAAS-GSPVASSG 59
Query: 61 SSSTAVENWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKS 120
SS A+ENWS TFEWDSRADDVR NVFGI YRANQ+EIINA+++GRDVLVIMAAGGGKS
Sbjct: 60 GSS-AIENWSETFEWDSRADDVRFNVFGISKYRANQKEIINAIMTGRDVLVIMAAGGGKS 118
Query: 121 LCYQLPAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKG 180
LCYQLPA+LR G LVVSPLLSLIQDQVM LAALGI A+MLTST+ KE+EKF+YKALEKG
Sbjct: 119 LCYQLPAMLRGGTTLVVSPLLSLIQDQVMGLAALGISAYMLTSTSGKENEKFVYKALEKG 178
Query: 181 EGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGI 240
E +LK+LYVTPEK+SKSKRFMSKLEKCH+AGRLSLISIDEAHCCSQWGHDFRPDYKNL I
Sbjct: 179 EDDLKILYVTPEKVSKSKRFMSKLEKCHNAGRLSLISIDEAHCCSQWGHDFRPDYKNLSI 238
Query: 241 LKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVV 300
LKTQFP VPM+ALTATATQKVQNDL+EMLHI KC+KFVS++NRPNLFY VREKS+VGK+V
Sbjct: 239 LKTQFPKVPMVALTATATQKVQNDLIEMLHIPKCVKFVSSVNRPNLFYSVREKSAVGKLV 298
Query: 301 IDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMR 360
+DEIA++I+ESY N+ESGIVYCFSRKECEQ+A +LR+RGISADYYHADMD N REKVHMR
Sbjct: 299 VDEIAEFIRESYSNNESGIVYCFSRKECEQIAGDLRERGISADYYHADMDANMREKVHMR 358
Query: 361 WSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFR 420
WSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKS+ETYYQESGRAGRDGLPSEC+LFFR
Sbjct: 359 WSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECILFFR 418
Query: 421 PADVPRQSSMVFYENSGLQNLYDIVRYSQYPLHWNIEKVRLVIFEKLQQVNLFC------ 474
ADVPRQSSMVFYE SGLQNLYDIVRY Q E Q N C
Sbjct: 419 SADVPRQSSMVFYEYSGLQNLYDIVRYCQSKTKCRRSAFFRHFGEPSQDCNGMCDNCALS 478
Query: 475 ----MVVLAGHAQCIISLLQDIQDNNQRLTMLQLVDKMKIKLKEIDSDLKREEIEQLVLQ 530
V ++ ++ ++S++Q+ Q +QR+TMLQL DK++ K K++ ++LKR+E+E LV++
Sbjct: 479 SEVKEVDVSDLSKLVVSMVQETQAKDQRVTMLQLGDKLRNKHKDLIAELKRDEVEHLVIK 538
Query: 531 LIIDRVL--------------VRIGPFS----PGKKIIKLEISSVQKNTADNKKSTKRSL 572
LI+D VL V +GP + G+K IK+E SS Q K KRS+
Sbjct: 539 LIVDSVLKEEFQHTPYSTNAYVTMGPLANQLLQGRKTIKMETSSRQ------TKKLKRSI 592
Query: 573 TSSALEFELDELRKELASISGGILPHSVLSSQLIRLISARKPSTMEEASSNHLEKIIGKL 632
T S LE +LDELRKE+++ G ILPH+VLS+Q I IS++KP +++E LE IIGKL
Sbjct: 593 TFSGLELKLDELRKEISAADGSILPHTVLSTQQIGSISSQKPVSLQE-----LESIIGKL 647
Query: 633 KTGKYGSRIL-EVISKCGNSEQQHDNNAVSKEEQGRDARASKRTKKEKAVVVVDSSDDSE 691
KT KYG RIL EV+ SEQ ++ +KEE + +R KR K +K VV+V+SS + E
Sbjct: 648 KTEKYGDRILEEVMRHEAVSEQLVEDP--TKEETCK-SRLRKRAKTQKDVVLVESSGEEE 704
Query: 692 V 692
Sbjct: 705 A 705
>sp|Q6AYJ1|RECQ1_RAT ATP-dependent DNA helicase Q1 OS=Rattus norvegicus GN=Recql PE=2
SV=1
Length = 621
Score = 472 bits (1215), Expect = e-132, Method: Compositional matrix adjust.
Identities = 260/620 (41%), Positives = 382/620 (61%), Gaps = 44/620 (7%)
Query: 6 ILQELENVEAEVRLVQEQIKQLVDRQDQLYERQSELKSLLEAFEASRGSPIQYGGSSSTA 65
+ ELE+V +E+ V QI++L +RQ +L +R+S L ++ + S + G T+
Sbjct: 7 LTDELESVSSELHAVDIQIQELTERQHELLQRKSVLTKRIK--QCLEDSAAEASGDCDTS 64
Query: 66 VENWSG-TFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQ 124
WS F W + V +VF + +R Q E +NA ++ +D+ ++M GGGKSLCYQ
Sbjct: 65 PAAWSKEDFPWSGKVKHVLRDVFKLQKFRPLQLETVNATMARKDIFLVMPTGGGKSLCYQ 124
Query: 125 LPAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGEL 184
LPA+ +G LV+ PL+SL++DQ+M L LGI A ML S++SKE K ++ + L
Sbjct: 125 LPALCSDGFTLVICPLISLMEDQLMVLQQLGISATMLNSSSSKEHVKCVHTEMMNKNSHL 184
Query: 185 KMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQ 244
K++YVTPEKI+KSK FMS+LEK + AGRL+ +++DE HCCSQWGHDFRPDYK LGILK Q
Sbjct: 185 KLIYVTPEKIAKSKMFMSRLEKAYEAGRLTGVAVDEVHCCSQWGHDFRPDYKALGILKRQ 244
Query: 245 FPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEI 304
FP++ ++ LTATAT V D ++L + KC+ F ++ NRPNL+Y VR+K S + I+ I
Sbjct: 245 FPNISLIGLTATATNHVLKDAQKILCVEKCLTFTASFNRPNLYYEVRQKPSSAEDFIENI 304
Query: 305 AKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKN 364
A I Y +SGI+YCFS+K+ EQV L++ G+ A YHA+M+ R KVH +WS N
Sbjct: 305 ANLINGRY-KGKSGIIYCFSQKDSEQVTISLQKLGVRAGTYHANMEPEDRTKVHTQWSAN 363
Query: 365 KLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADV 424
+LQV+V TVAFGMGI+KPDVRFVIHHS+SKS+E YYQESGRAGRD ++C+L++ D+
Sbjct: 364 ELQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDWRADCILYYGFGDI 423
Query: 425 PRQSSMVFYENSGLQNLYDIVRYSQYPLHWNIEKV-RLVIFEKLQQV------NLFCMVV 477
R SSMV EN G Q LY++V Y Q NI K R +I + +V N C
Sbjct: 424 FRISSMVVMENVGQQKLYEMVSYCQ-----NISKCRRALIAQHFDEVWNADACNKMCDNC 478
Query: 478 ----------LAGHAQCIISLLQDIQDNNQRLTMLQLVD--------KMKIKLKEIDSDL 519
+ H Q +I +L+ + N++LT L+L+D K ++ + + L
Sbjct: 479 CKDDSFEKKNITEHCQALIKILKQAEGLNEKLTPLKLIDAWMGKGAAKFRVAGVAVPA-L 537
Query: 520 KREEIEQLVLQLIIDRVLVRIGPFSPGKKIIKLEI---SSVQKN-----TADNKKSTKRS 571
RE++E++++ ++ + L F+ I L++ +S+ N T K+ST+ S
Sbjct: 538 PREDLEKIIVHALLQQYLKEDYSFTAYATISYLKVGPRASLLSNEGHAVTMQVKRSTQSS 597
Query: 572 LTSSALE-FELDELRKELAS 590
+ +++ E E+D KE +S
Sbjct: 598 VRAASPEACEVDSKGKEKSS 617
>sp|Q9Z129|RECQ1_MOUSE ATP-dependent DNA helicase Q1 OS=Mus musculus GN=Recql PE=1 SV=2
Length = 648
Score = 464 bits (1195), Expect = e-130, Method: Compositional matrix adjust.
Identities = 245/573 (42%), Positives = 360/573 (62%), Gaps = 31/573 (5%)
Query: 6 ILQELENVEAEVRLVQEQIKQLVDRQDQLYERQSELKSLLEAFEASRGSPIQYGGSSSTA 65
+ +ELE+V +E+ + QI++L +R+ +L +R+S L ++ + + +S A
Sbjct: 7 LTEELESVASELHAIDIQIQELTERRQELLQRKSVLTGKIKQYLEDSSAEASSDLDTSPA 66
Query: 66 VENWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQL 125
N F W + DV NVF + +R Q E IN ++ +D+ ++M GGGKSLCYQL
Sbjct: 67 AWN-KEDFPWFGKVKDVLQNVFKLQKFRPLQLETINVTMARKDIFLVMPTGGGKSLCYQL 125
Query: 126 PAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELK 185
PA+ +G LV+ PL+SL++DQ+M L LGI A ML +++SKE K+++ + +LK
Sbjct: 126 PALCSDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSQLK 185
Query: 186 MLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQF 245
++YVTPEKI+KSK FMS+LEK + AGRL+ ++DE HCCSQWGHDFRPDYK LGILK QF
Sbjct: 186 LIYVTPEKIAKSKMFMSRLEKAYEAGRLTGAAVDEVHCCSQWGHDFRPDYKALGILKRQF 245
Query: 246 PDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIA 305
P+ +M LTATAT V D+ ++L + KC+ F ++ NRPNLFY VR+K S + ++I
Sbjct: 246 PNASLMGLTATATNHVLKDVQKILCVGKCLTFTASFNRPNLFYEVRQKPSSAEDFTEDIV 305
Query: 306 KYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNK 365
K I Y +SGI+YCFS+K+ EQ+ L++ GI A YHA+M+ + KVH +WS N+
Sbjct: 306 KLINGRY-KGQSGIIYCFSQKDSEQITISLQKLGIHAGTYHANMEPEDKTKVHTQWSANE 364
Query: 366 LQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVP 425
LQV+V TVAFGMGI+KPDVRFVIHHS+SKS+E YYQESGRAGRD ++C+L++ D+
Sbjct: 365 LQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDSRADCILYYGFGDIF 424
Query: 426 RQSSMVFYENSGLQNLYDIVRYSQYPLHWNIEKVRLVI----FEKLQQVNL-------FC 474
R SSMV EN G Q LY++V Y Q N+ K R V+ F+++ + C
Sbjct: 425 RISSMVVMENVGQQKLYEMVSYCQ-----NVSKCRRVLIAQHFDEVWNADACNKMCDNCC 479
Query: 475 MVV------LAGHAQCIISLLQDIQDNNQRLTMLQLVD----KMKIKLK---EIDSDLKR 521
V + H + +I +L+ + N++LT L+L+D K KL+ + L R
Sbjct: 480 KDVSFEKKNVTQHCRDLIKILKQAEGLNEKLTPLKLIDAWMGKGAAKLRVAGVVAPALPR 539
Query: 522 EEIEQLVLQLIIDRVLVRIGPFSPGKKIIKLEI 554
E++E++V ++ + L F+ I L++
Sbjct: 540 EDLERIVAHALLQQYLKEDYSFTAYATISYLKV 572
>sp|Q5RF63|RECQ1_PONAB ATP-dependent DNA helicase Q1 OS=Pongo abelii GN=RECQL PE=2 SV=1
Length = 649
Score = 459 bits (1182), Expect = e-128, Method: Compositional matrix adjust.
Identities = 247/578 (42%), Positives = 362/578 (62%), Gaps = 41/578 (7%)
Query: 6 ILQELENVEAEVRLVQEQIKQLVDRQDQLYERQSELKS----LLEAFEASRGSPIQYGGS 61
+ +EL+++ +E+ V+ QI++L +RQ++L +++ L LE +A G+ +Y S
Sbjct: 7 LTEELDSITSELHAVEIQIQELTERQEELIQKKKVLTKKIKQCLEDSDA--GASNEYDSS 64
Query: 62 SSTAVENWSG-TFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKS 120
+ W+ F W + DV NVF + +R Q E IN ++G++V ++M GGGK
Sbjct: 65 PAA----WNKEDFPWSGKVKDVLQNVFKLQKFRPLQLETINVTMAGKEVFLVMPTGGGKG 120
Query: 121 LCYQLPAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKG 180
LCYQLPA+ +G LV+ PL+SL++DQ+M L LGI A ML +++SKE K+++ +
Sbjct: 121 LCYQLPALCSDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNK 180
Query: 181 EGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGI 240
ELK++YVTPEKI+KSK FMS+LEK + A R + I++DE HCCSQWGHDFRPDYK LGI
Sbjct: 181 NSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGI 240
Query: 241 LKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVV 300
LK QFP+ ++ LTATAT V D ++L I KC F ++ NRPNL+Y VR+K S +
Sbjct: 241 LKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDF 300
Query: 301 IDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMR 360
I++I K I Y +SGI+YCFS+K+ EQV LR GI A YHA+++ + VH +
Sbjct: 301 IEDIVKLINGRY-KGQSGIIYCFSQKDSEQVTVSLRNLGIHAGAYHANLEPEDKTTVHRK 359
Query: 361 WSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFR 420
WS N++QV+V TVAFGMGI+KPDVRFVIHHS+SKS+E YYQESGRAGRD + ++C+L++
Sbjct: 360 WSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYG 419
Query: 421 PADVPRQSSMVFYENSGLQNLYDIVRYSQYPLHWNIEKV-RLVIFEKLQQV------NLF 473
D+ R SSMV EN G Q LY++V Y Q NI K RL++ + +V N
Sbjct: 420 FGDIFRISSMVVMENVGQQKLYEMVSYCQ-----NISKCRRLLMAQHFDEVWNSEACNKM 474
Query: 474 CMVV----------LAGHAQCIISLLQDIQDNNQRLTMLQLVD----KMKIKLK---EID 516
C + + + +I +L+ ++ N++LT L+L+D K KL+ +
Sbjct: 475 CDNCCKDSAFERKNITEYCRDLIKILKQAEELNEKLTPLKLIDSWMGKGAAKLRVAGVVA 534
Query: 517 SDLKREEIEQLVLQLIIDRVLVRIGPFSPGKKIIKLEI 554
L RE++E+++ +I + L F+ I L+I
Sbjct: 535 PTLPREDLEKIIAHFLIQQYLKEDYSFTAYATISYLKI 572
>sp|P46063|RECQ1_HUMAN ATP-dependent DNA helicase Q1 OS=Homo sapiens GN=RECQL PE=1 SV=3
Length = 649
Score = 459 bits (1181), Expect = e-128, Method: Compositional matrix adjust.
Identities = 246/578 (42%), Positives = 363/578 (62%), Gaps = 41/578 (7%)
Query: 6 ILQELENVEAEVRLVQEQIKQLVDRQDQLYERQSELKS----LLEAFEASRGSPIQYGGS 61
+ +EL+++ +E+ V+ QI++L +RQ +L +++ L LE +A G+ +Y S
Sbjct: 7 LTEELDSITSELHAVEIQIQELTERQQELIQKKKVLTKKIKQCLEDSDA--GASNEYDSS 64
Query: 62 SSTAVENWSG-TFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKS 120
+ W+ F W + D+ NVF + +R Q E IN ++G++V ++M GGGKS
Sbjct: 65 PAA----WNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKS 120
Query: 121 LCYQLPAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKG 180
LCYQLPA+ +G LV+ PL+SL++DQ+M L LGI A ML +++SKE K+++ +
Sbjct: 121 LCYQLPALCSDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNK 180
Query: 181 EGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGI 240
ELK++YVTPEKI+KSK FMS+LEK + A R + I++DE HCCSQWGHDFRPDYK LGI
Sbjct: 181 NSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGI 240
Query: 241 LKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVV 300
LK QFP+ ++ LTATAT V D ++L I KC F ++ NRPNL+Y VR+K S +
Sbjct: 241 LKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDF 300
Query: 301 IDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMR 360
I++I K I Y +SGI+YCFS+K+ EQV L+ GI A YHA+++ + VH +
Sbjct: 301 IEDIVKLINGRY-KGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRK 359
Query: 361 WSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFR 420
WS N++QV+V TVAFGMGI+KPDVRFVIHHS+SKS+E YYQESGRAGRD + ++C+L++
Sbjct: 360 WSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYG 419
Query: 421 PADVPRQSSMVFYENSGLQNLYDIVRYSQYPLHWNIEKVRLVI----FEKL---QQVNLF 473
D+ R SSMV EN G Q LY++V Y Q NI K R V+ F+++ + N
Sbjct: 420 FGDIFRISSMVVMENVGQQKLYEMVSYCQ-----NISKCRRVLMAQHFDEVWNSEACNKM 474
Query: 474 CMVV----------LAGHAQCIISLLQDIQDNNQRLTMLQLVD----KMKIKLK---EID 516
C + + + +I +L+ ++ N++LT L+L+D K KL+ +
Sbjct: 475 CDNCCKDSAFERKNITEYCRDLIKILKQAEELNEKLTPLKLIDSWMGKGAAKLRVAGVVA 534
Query: 517 SDLKREEIEQLVLQLIIDRVLVRIGPFSPGKKIIKLEI 554
L RE++E+++ +I + L F+ I L+I
Sbjct: 535 PTLPREDLEKIIAHFLIQQYLKEDYSFTAYATISYLKI 572
>sp|A8WK63|RECQ1_CAEBR Putative ATP-dependent DNA helicase Q1 OS=Caenorhabditis briggsae
GN=CBG24191 PE=3 SV=1
Length = 618
Score = 426 bits (1094), Expect = e-118, Method: Compositional matrix adjust.
Identities = 206/441 (46%), Positives = 296/441 (67%), Gaps = 11/441 (2%)
Query: 9 ELENVEAEVRLVQEQIKQLVDRQDQLYERQSELKSLLEAFEASRGSPIQYGGSSSTAVEN 68
EL +++ +V + +QI QL ++ +L +++ L+ +E ++ S ++
Sbjct: 12 ELADLDGQVSQIDQQISQLRRKKAELIQKKQALERKIE---------MKTNEDSDVVLDR 62
Query: 69 WS-GTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPA 127
W +F W A+ + N F + +R Q INAV+S D +VI++ GGGKSLCYQLPA
Sbjct: 63 WDQDSFPWSDEANQILKNKFRLEKFRPLQSAAINAVMSKEDAIVILSTGGGKSLCYQLPA 122
Query: 128 VLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKML 187
+L +G+ LV+SPL+SL++DQ+M L LGI A L + T K++ K + +A+ KG EL++L
Sbjct: 123 LLAKGLTLVISPLVSLVEDQIMQLQKLGIDAASLNANTPKDEAKRVEQAITKGSTELRLL 182
Query: 188 YVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPD 247
YVTPEK++KSKR M++LEK G L LI+IDE HCCSQWGHDFR DY L +LK QF
Sbjct: 183 YVTPEKLAKSKRMMNQLEKSLGVGYLKLIAIDEVHCCSQWGHDFRTDYSFLNVLKRQFKG 242
Query: 248 VPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKY 307
VP++ LTATAT V +D+ +ML I I F + NR NL Y V K +++I +
Sbjct: 243 VPILGLTATATSNVLDDVKKMLGIPVAIVFRAGFNRANLNYKVLTKPGSEDECVEKIVRT 302
Query: 308 IQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQ 367
I+ + + ++GI+YC SR +CE++A+ L+ GI A +YHA M+ R H +W ++Q
Sbjct: 303 IKRKF-SGKTGIIYCLSRNDCEKLAKSLKANGIRAKHYHAYMEPVDRSAAHQKWVSGEIQ 361
Query: 368 VIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQ 427
VIV TVAFGMGI+KPDVRFVIHHSL KS+E YYQESGRAGRDGLP+ C+L++R +D+ +Q
Sbjct: 362 VIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQESGRAGRDGLPATCILYYRMSDIFKQ 421
Query: 428 SSMVFYENSGLQNLYDIVRYS 448
SSM+ E +G+ NLY++VRY+
Sbjct: 422 SSMIQQEQTGIANLYNMVRYA 442
>sp|Q9TXJ8|RECQ1_CAEEL Putative ATP-dependent DNA helicase Q1 OS=Caenorhabditis elegans
GN=K02F3.12 PE=3 SV=3
Length = 631
Score = 422 bits (1086), Expect = e-117, Method: Compositional matrix adjust.
Identities = 207/441 (46%), Positives = 292/441 (66%), Gaps = 11/441 (2%)
Query: 9 ELENVEAEVRLVQEQIKQLVDRQDQLYERQSELKSLLEAFEASRGSPIQYGGSSSTAVEN 68
EL +++ E+ + +QI QL ++ +L +++ ++ +E ++ S +
Sbjct: 35 ELADLDGEIGQIDQQISQLRRKKSELTQKRQAIERKIE---------LKTNEDSDVVTDR 85
Query: 69 WS-GTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPA 127
W F W A + F + +R Q+ INAV+S D +VI++ GGGKSLCYQLPA
Sbjct: 86 WDRDGFPWSDEATKILKEQFHLEKFRPLQRAAINAVMSKEDAVVILSTGGGKSLCYQLPA 145
Query: 128 VLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKML 187
+L G+ALVVSPL+SL++DQ++ L +LGI + L + TSKE+ K + A+ + + ++L
Sbjct: 146 LLANGLALVVSPLISLVEDQILQLRSLGIDSSSLNANTSKEEAKRVEDAITNKDSKFRLL 205
Query: 188 YVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPD 247
YVTPEK++KSK+ M+KLEK G L LI+IDE HCCSQWGHDFR DY L +LK QF
Sbjct: 206 YVTPEKLAKSKKMMNKLEKSLSVGFLKLIAIDEVHCCSQWGHDFRTDYSFLNVLKRQFKG 265
Query: 248 VPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKY 307
VP++ LTATAT V +D+ +ML I+ + F + NR NL Y V +K +EIAK
Sbjct: 266 VPILGLTATATSNVLDDVKDMLGIQAALTFRAGFNRSNLKYKVVQKPGSEDECTEEIAKT 325
Query: 308 IQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQ 367
I+ + ++GI+YC SR +CE+VA+ L+ GI A +YHA M+ R H W K+Q
Sbjct: 326 IKRDFAG-QTGIIYCLSRNDCEKVAKALKSHGIKAKHYHAYMEPVDRSGAHQGWISGKIQ 384
Query: 368 VIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQ 427
VIV TVAFGMGI+KP+VRFVIHHSL KS+E YYQESGRAGRDG P+ C+L++R AD+ +Q
Sbjct: 385 VIVATVAFGMGIDKPNVRFVIHHSLPKSIENYYQESGRAGRDGQPATCILYYRLADIFKQ 444
Query: 428 SSMVFYENSGLQNLYDIVRYS 448
SSMV E +G+QNLY++VRY+
Sbjct: 445 SSMVQQERTGIQNLYNMVRYA 465
>sp|Q8L840|RQL4A_ARATH ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana
GN=RECQL4A PE=2 SV=1
Length = 1188
Score = 371 bits (953), Expect = e-102, Method: Compositional matrix adjust.
Identities = 178/364 (48%), Positives = 248/364 (68%), Gaps = 5/364 (1%)
Query: 69 WSG-TFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPA 127
WS F W + + VFG ++R NQ+EIINA +SG DV V+M GGGKSL YQLPA
Sbjct: 430 WSSREFPWTRKLEVNNKKVFGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPA 489
Query: 128 VLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKML 187
++ GI LV+SPL+SLIQDQ+M L IPA L++ ++ I++ L + K+L
Sbjct: 490 LICGGITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLKIFQELNSEHSKYKLL 549
Query: 188 YVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPD 247
YVTPEK++KS + LE + G L+ IDEAHC SQWGHDFRPDY++LGILK +FP+
Sbjct: 550 YVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQSLGILKQKFPN 609
Query: 248 VPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKY 307
+P++ALTATAT V+ D+++ L + C+ F + NRPNL+Y V K+ K +++I K+
Sbjct: 610 IPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKT---KKCLEDIDKF 666
Query: 308 IQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQ 367
I+E++ + E GI+YC SR +CE+V++ L++ G A +YH M+ R + +WSK+++
Sbjct: 667 IKENHFD-ECGIIYCLSRMDCEKVSERLQEFGHKAAFYHGSMEPEQRAFIQTQWSKDEIN 725
Query: 368 VIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQ 427
+I TVAFGMGINKPDVRFVIHHSL KS+E Y+QE GRAGRDG S C+L++ D R
Sbjct: 726 IICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYGYGDYIRV 785
Query: 428 SSMV 431
M+
Sbjct: 786 KHMI 789
>sp|Q9VGI8|BLM_DROME Bloom syndrome protein homolog OS=Drosophila melanogaster GN=mus309
PE=1 SV=1
Length = 1487
Score = 367 bits (943), Expect = e-100, Method: Compositional matrix adjust.
Identities = 200/489 (40%), Positives = 288/489 (58%), Gaps = 41/489 (8%)
Query: 87 FGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQD 146
FG+ ++R NQ ++INA L G D V+M GGGKSLCYQLPA+L EG+ +V+SPL SLI D
Sbjct: 733 FGLKSFRPNQLQVINATLLGNDCFVLMPTGGGKSLCYQLPAILTEGVTIVISPLKSLIFD 792
Query: 147 QVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEK 206
Q+ LA+L I A L+ D IY+ LE +K+LYVTPEKIS S RF L+
Sbjct: 793 QINKLASLDICAKSLSGEQKMADVMAIYRDLESQPPMVKLLYVTPEKISSSARFQDTLDT 852
Query: 207 CHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLM 266
+ +S IDEAHC SQWGHDFRPDYK LG+LK +FP+VP +ALTATAT +V+ D++
Sbjct: 853 LNSNNYISRFVIDEAHCVSQWGHDFRPDYKKLGVLKKRFPNVPTIALTATATPRVRLDIL 912
Query: 267 EMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRK 326
L+++ C F+S+ NR NL Y V K V +D+I++YI+ S P SGI+YC SRK
Sbjct: 913 AQLNLKNCKWFLSSFNRSNLRYRVLPKKGVS--TLDDISRYIR-SKPQHFSGIIYCLSRK 969
Query: 327 ECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRF 386
EC++ ++++ + G+ A YHA + RE W K++VI TVAFGMGI+KPDVRF
Sbjct: 970 ECDETSKKMCKDGVRAVSYHAGLTDTDRESRQKDWLTGKMRVICATVAFGMGIDKPDVRF 1029
Query: 387 VIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFYENS--------GL 438
V+H+SL KS+E YYQE+GRAGRDG ++C+L++ +D+ R M+ + + +
Sbjct: 1030 VLHYSLPKSIEGYYQEAGRAGRDGDVADCILYYNYSDMLRIKKMLDSDKALQYNVKKIHV 1089
Query: 439 QNLYDIVRYSQ-------------YPLHWNIEKV---RLVIFEKLQQVNLFCMVVLAGHA 482
NLY IV Y + + H+ E+ R + + V HA
Sbjct: 1090 DNLYRIVGYCENLTDCRRAQQLDYFGEHFTSEQCLENRETACDNCINKRAYKAVDALEHA 1149
Query: 483 QCIISLLQDIQDNNQRLTMLQLVDKMK-IKLKEIDS-------------DLKREEIEQLV 528
+ ++D+ R T+L + D +K K+K+I D + ++ +L+
Sbjct: 1150 RKAARAVKDLCSGRSRFTLLHIADVLKGSKIKKIIDFNHHKTPHHGVLKDWDKNDVHRLL 1209
Query: 529 LQLIIDRVL 537
+++ID L
Sbjct: 1210 RKMVIDGFL 1218
>sp|Q9FT70|RQL4B_ARATH ATP-dependent DNA helicase Q-like 4B OS=Arabidopsis thaliana
GN=RECQL4B PE=2 SV=1
Length = 1150
Score = 366 bits (939), Expect = e-100, Method: Compositional matrix adjust.
Identities = 190/418 (45%), Positives = 267/418 (63%), Gaps = 10/418 (2%)
Query: 20 VQEQIKQLVDR----QDQLYERQS-ELKSLLEAFEASRGSPIQYGGSSSTAVENWSGT-F 73
V+EQ + + D +D L ++ ++ S E E S I + S+ + W+ + F
Sbjct: 392 VKEQGRCVTDNWNMPRDYLVSKERYDISSGSEEREQSVSEVIDVTDTESSNDKKWTSSDF 451
Query: 74 EWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGI 133
W + VFG ++R NQ+EIINA +SG DV V+M GGGKSL YQLPA+L GI
Sbjct: 452 PWTKNLEVYNKLVFGNHSFRPNQREIINATMSGCDVFVLMPTGGGKSLTYQLPALLCAGI 511
Query: 134 ALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEK 193
LV+SPL+SLIQDQ+M L I A L++ ++ I + L + + K+LYVTPEK
Sbjct: 512 TLVISPLVSLIQDQIMNLLQTNISAASLSAGMEWAEQLEILQELSSEKSKYKLLYVTPEK 571
Query: 194 ISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMAL 253
++KS+ + LE + L+ IDEAHC SQWGHDFRPDY+ LG+LK +FP++PM+AL
Sbjct: 572 VAKSESLLRHLEILNSRSLLARFVIDEAHCVSQWGHDFRPDYQGLGVLKQKFPNIPMLAL 631
Query: 254 TATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYP 313
TATAT V+ D+++ L + C+ F + NRPNL+Y V K++ +++I K+I+E++
Sbjct: 632 TATATTSVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTN---KCLEDIDKFIRENHF 688
Query: 314 NSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTV 373
+ E GI+YC SR +CE+V + LR G A +YH MD R V +WSK+++ +I TV
Sbjct: 689 D-ECGIIYCLSRMDCEKVTEALRVFGHKAAFYHGSMDPGKRAFVQKQWSKDEINIICATV 747
Query: 374 AFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMV 431
AFGMGINKPDVRFVIHHSL KS+E Y+QE GRAGRDG S C+L++ D R M+
Sbjct: 748 AFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYTDYIRVKHMI 805
>sp|P54132|BLM_HUMAN Bloom syndrome protein OS=Homo sapiens GN=BLM PE=1 SV=1
Length = 1417
Score = 351 bits (901), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 184/385 (47%), Positives = 243/385 (63%), Gaps = 17/385 (4%)
Query: 87 FGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQD 146
FG+ +R NQ E INA L G D ++M GGGKSLCYQLPA + G+ +V+SPL SLI D
Sbjct: 663 FGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTVVISPLRSLIVD 722
Query: 147 QVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEK 206
QV L +L IPA LT + + IY L K + +K+LYVTPEKI S R +S LE
Sbjct: 723 QVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEKICASNRLISTLEN 782
Query: 207 CHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLM 266
+ L+ IDEAHC SQWGHDFR DYK + +L+ +FP VP+MALTATA +VQ D++
Sbjct: 783 LYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDIL 842
Query: 267 EMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRK 326
L I + F + NR NL Y V K KV D + ++I++ +P +SGI+YC SR+
Sbjct: 843 TQLKILRPQVFSMSFNRHNLKYYVLPKKP-KKVAFDCL-EWIRKHHP-YDSGIIYCLSRR 899
Query: 327 ECEQVAQELRQRGISADYYHADMDINAREKVHMRW-SKNKLQVIVGTVAFGMGINKPDVR 385
EC+ +A L++ G++A YHA + +AR++V +W +++ QVI T+AFGMGI+KPDVR
Sbjct: 900 ECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAFGMGIDKPDVR 959
Query: 386 FVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFYENSG-------- 437
FVIH SL KSVE YYQESGRAGRDG S CLLF+ DV R ++ E G
Sbjct: 960 FVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEKDGNHHTRETH 1019
Query: 438 LQNLYDIVRYSQYPLHWNIEKVRLV 462
NLY +V Y + NI + R +
Sbjct: 1020 FNNLYSMVHYCE-----NITECRRI 1039
>sp|Q9DEY9|BLM_XENLA Bloom syndrome protein homolog OS=Xenopus laevis GN=blm PE=2 SV=1
Length = 1364
Score = 350 bits (897), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 202/500 (40%), Positives = 276/500 (55%), Gaps = 57/500 (11%)
Query: 87 FGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQD 146
FG+ +R NQ E INA L G D ++M GGGKSLCYQLP + G+ +V+SPL SLI D
Sbjct: 615 FGLHRFRTNQLEAINACLCGEDCFILMPTGGGKSLCYQLPGCISPGVTIVISPLRSLIVD 674
Query: 147 QVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEK 206
QV L +L IPA LT + + IY L K + +K+LYVTPEK+ S R +S +E
Sbjct: 675 QVQKLTSLDIPATYLTGDKTDAEAASIYLQLSKKDPIIKLLYVTPEKVCASTRLISTMEN 734
Query: 207 CHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLM 266
+ L+ IDEAHC SQWGHDFRPDYK L +L+ +F VPMMALTATA +V+ D++
Sbjct: 735 LYERQLLARFVIDEAHCVSQWGHDFRPDYKRLNVLRQKFQSVPMMALTATANPRVKKDIL 794
Query: 267 EMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRK 326
L + K F + NR NL Y V K K V + ++I++ +PN +SGI+YC SR
Sbjct: 795 NQLKMTKPQIFTMSFNRDNLKYEVLPKKP--KRVALDCVEWIKKHHPN-DSGIIYCLSRH 851
Query: 327 ECEQVAQELRQRGISADYYHADMDINAREKVHMRW-SKNKLQVIVGTVAFGMGINKPDVR 385
EC+ +A L++ G++A YHA + + R+ V +W +++ QVI T+AFGMGI+KPDVR
Sbjct: 852 ECDTMADTLQKEGLAALAYHAGLADSNRDYVQHKWINQDDCQVICATIAFGMGIDKPDVR 911
Query: 386 FVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFYENSG-------- 437
+VIH SL KSVE YYQESGRAGRDG S CLLF+ DV R ++ E G
Sbjct: 912 YVIHASLPKSVEGYYQESGRAGRDGETSHCLLFYSYHDVTRIRRLIQMEKDGNSHTKQTH 971
Query: 438 LQNLYDIVRYSQYPLHWNIEKVRLVIFEKLQQVNLFCMVVLAGHAQ--C----------- 484
NLY +V Y + N+ + R + N F H Q C
Sbjct: 972 FNNLYSMVHYCE-----NVVECRRMQLLSYFGENNFNPNFCKEHTQVACDNCLGKKNYKS 1026
Query: 485 ---------IISLLQDI----------QDNNQRLTMLQLVD--------KMKIKLKEIDS 517
I+ +QD + NN RLT+ +VD K++ L +
Sbjct: 1027 RDVTDDVGNIVRFVQDNCSLVQGRGKGRSNNTRLTLNMMVDIFLGSKSAKIQTGLFGKGA 1086
Query: 518 DLKREEIEQLVLQLIIDRVL 537
R E+L +L++DR++
Sbjct: 1087 AYSRHNAERLFRKLVLDRII 1106
>sp|O88700|BLM_MOUSE Bloom syndrome protein homolog OS=Mus musculus GN=Blm PE=1 SV=1
Length = 1416
Score = 346 bits (888), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 180/385 (46%), Positives = 243/385 (63%), Gaps = 17/385 (4%)
Query: 87 FGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQD 146
FG+ +R NQ E INA L G D ++M GGGKSLCYQLPA + G+ +V+SPL SLI D
Sbjct: 671 FGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVISPLRSLIVD 730
Query: 147 QVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEK 206
QV L + IPA LT + + IY L K + +K+LYVTPEK+ S R +S LE
Sbjct: 731 QVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYVTPEKVCASNRLISTLEN 790
Query: 207 CHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLM 266
+ L+ IDEAHC SQWGHDFR DYK + +L+ +FP VP+MALTATA +VQ D++
Sbjct: 791 LYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDIL 850
Query: 267 EMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRK 326
L I + F + NR NL Y V K KV D + ++I++ +P +SGI+YC SR+
Sbjct: 851 TQLKILRPQVFSMSFNRHNLKYYVLPKKP-KKVAFDCL-EWIRKHHP-YDSGIIYCLSRR 907
Query: 327 ECEQVAQELRQRGISADYYHADMDINAREKVHMRW-SKNKLQVIVGTVAFGMGINKPDVR 385
EC+ +A L++ G++A YHA + +AR++V +W +++ QVI T+AFGMGI+KPDVR
Sbjct: 908 ECDTMADTLQREGLAALAYHAGLSDSARDEVQHKWINQDNCQVICATIAFGMGIDKPDVR 967
Query: 386 FVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFYENSG-------- 437
FVIH SL KS+E YYQESGRAGRDG S C+LF+ DV R ++ E G
Sbjct: 968 FVIHASLPKSMEGYYQESGRAGRDGEISHCVLFYTYHDVTRLKRLIMMEKDGNYHTKETH 1027
Query: 438 LQNLYDIVRYSQYPLHWNIEKVRLV 462
+ NLY +V Y + NI + R +
Sbjct: 1028 VNNLYSMVHYCE-----NITECRRI 1047
>sp|Q9I920|BLM_CHICK Bloom syndrome protein homolog (Fragment) OS=Gallus gallus GN=BLM
PE=2 SV=1
Length = 1142
Score = 333 bits (855), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 177/372 (47%), Positives = 231/372 (62%), Gaps = 12/372 (3%)
Query: 87 FGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQD 146
FG+ ++R NQ E INA L G D ++M GGGKSLCYQLPA + G+ +V+SPL SLI D
Sbjct: 393 FGLHSFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSAGVTVVISPLRSLIID 452
Query: 147 QVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEK 206
QV L L I A LT + D Y L K + +K+LYVTPEK+ S R +S LE
Sbjct: 453 QVQKLKTLDIAATYLTGDITDADASKTYMQLSKKDPIIKLLYVTPEKVCASNRLLSALEN 512
Query: 207 CHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLM 266
+ L+ IDEAHC SQWGHDFR DYK L +L+ +F VPMMALTATA +VQ D+
Sbjct: 513 LYDRKLLARFVIDEAHCVSQWGHDFRKDYKRLNMLRKKFHSVPMMALTATANPRVQKDIQ 572
Query: 267 EMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRK 326
L + K F + NR NL Y V K KV +D + ++I++ +P+ +SGI+YC SR
Sbjct: 573 NQLEMLKPQVFTMSFNRHNLKYDVLPKKP-KKVAMDCL-EWIKKYHPH-DSGIIYCLSRH 629
Query: 327 ECEQVAQELRQRGISADYYHADMDINAREKVHMRW-SKNKLQVIVGTVAFGMGINKPDVR 385
EC+ A L++ G++A YHA + + R+ V +W ++ QVI T+AFGMGI+KPDVR
Sbjct: 630 ECDTTAAILQKEGLAALAYHAGLTDSNRDLVQKKWVNQEGCQVICATIAFGMGIDKPDVR 689
Query: 386 FVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFYENSG-------- 437
+VIH SL KSVE YY ESGRAGRDG S CLLF+ +DV R ++ E G
Sbjct: 690 YVIHASLPKSVEGYYHESGRAGRDGEMSHCLLFYSYSDVTRLRRLILMEKDGNSHTRQTH 749
Query: 438 LQNLYDIVRYSQ 449
NLY +V Y +
Sbjct: 750 FNNLYSMVHYCE 761
>sp|P35187|SGS1_YEAST ATP-dependent helicase SGS1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SGS1 PE=1 SV=1
Length = 1447
Score = 329 bits (843), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 160/367 (43%), Positives = 238/367 (64%), Gaps = 16/367 (4%)
Query: 72 TFEWDSRADDV--RLN-VFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAV 128
T+ W +D+V RL+ VF +P +R NQ E +NA L G+DV V+M GGGKSLCYQLPAV
Sbjct: 659 TYPW---SDEVLYRLHEVFKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAV 715
Query: 129 LR----EGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGEL 184
++ G +V+SPL+SL+QDQV L I A M +S + E + + G L
Sbjct: 716 VKSGKTHGTTIVISPLISLMQDQVEHLLNKNIKASMFSSRGTAEQRRQTFNLFINGL--L 773
Query: 185 KMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQ 244
++Y++PE IS S++ + + + G+L+ I +DEAHC S WGHDFRPDYK L K +
Sbjct: 774 DLVYISPEMISASEQCKRAISRLYADGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKRE 833
Query: 245 FPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEI 304
+PD+PM+ALTATA+++V+ D++ L +++ + + NR NL+Y V +K+ K I EI
Sbjct: 834 YPDIPMIALTATASEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEVNKKT---KNTIFEI 890
Query: 305 AKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKN 364
++ + N ++GI+YC S+K CEQ + ++++ GI YYHA M+ + R V W +
Sbjct: 891 CDAVKSRFKN-QTGIIYCHSKKSCEQTSAQMQRNGIKCAYYHAGMEPDERLSVQKAWQAD 949
Query: 365 KLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADV 424
++QVI TVAFGMGI+KPDVRFV H ++ +++E YYQE+GRAGRDG S C+ +F D+
Sbjct: 950 EIQVICATVAFGMGIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSYCITYFSFRDI 1009
Query: 425 PRQSSMV 431
+M+
Sbjct: 1010 RTMQTMI 1016
>sp|P15043|RECQ_ECOLI ATP-dependent DNA helicase RecQ OS=Escherichia coli (strain K12)
GN=recQ PE=1 SV=5
Length = 609
Score = 328 bits (842), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 159/349 (45%), Positives = 233/349 (66%), Gaps = 13/349 (3%)
Query: 76 DSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIAL 135
+S A V FG +R Q+EII+ VLSGRD LV+M GGGKSLCYQ+PA+L G+ +
Sbjct: 10 ESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTV 69
Query: 136 VVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKIS 195
VVSPL+SL++DQV L A G+ A L ST ++E + + G+ +++LY+ PE++
Sbjct: 70 VVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLM 127
Query: 196 KSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTA 255
F+ L + L+++DEAHC SQWGHDFRP+Y LG L+ +FP +P MALTA
Sbjct: 128 LDN-FLEHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTA 182
Query: 256 TATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNS 315
TA + D++ +L + + +S+ +RPN+ YM+ EK +D++ +Y+QE
Sbjct: 183 TADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKP----LDQLMRYVQEQ--RG 236
Query: 316 ESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAF 375
+SGI+YC SR + E A L+ +GISA YHA ++ N R V ++ ++ LQ++V TVAF
Sbjct: 237 KSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAF 296
Query: 376 GMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADV 424
GMGINKP+VRFV+H + +++E+YYQE+GRAGRDGLP+E +LF+ PAD+
Sbjct: 297 GMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADM 345
>sp|P71359|RECQ_HAEIN ATP-dependent DNA helicase RecQ OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=recQ PE=3 SV=1
Length = 619
Score = 328 bits (840), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 157/339 (46%), Positives = 231/339 (68%), Gaps = 13/339 (3%)
Query: 85 NVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLI 144
+VFG ++R Q+E+INA L+G+D LV+MA G GKSLCYQ+PA+ +G+ LV+SPL+SL+
Sbjct: 22 SVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISPLISLM 81
Query: 145 QDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKL 204
+DQV L A GI A L S+ + E ++ + L G+LK+LYV+PEK+ + F
Sbjct: 82 KDQVDQLQANGIEADFLNSSQTLEQQQQVQNKLI--SGQLKLLYVSPEKVMTNSFF---- 135
Query: 205 EKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQND 264
+ ++ I+IDEAHC SQWGHDFRP+Y LG LK FPD P+MALTATA Q D
Sbjct: 136 -QLISYSKVCFIAIDEAHCISQWGHDFRPEYTQLGGLKASFPDAPIMALTATADYATQQD 194
Query: 265 LMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFS 324
++ L+++ K++ + +RPN+ Y + EK ++++ +++ +SGI+YC S
Sbjct: 195 ILRHLNLKNLHKYIGSFDRPNIRYTLEEKYKP----MEQLTRFVLAQ--KGKSGIIYCNS 248
Query: 325 RKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDV 384
R + E++A+ LR +G+SA YHA M+ RE+V + ++ +QV+V T+AFGMGINK +V
Sbjct: 249 RNKVERIAESLRNKGVSAAAYHAGMETAIRERVQQDFQRDNVQVVVATIAFGMGINKSNV 308
Query: 385 RFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPAD 423
RFV H L +S+E+YYQE+GRAGRD LP+E +LF+ PAD
Sbjct: 309 RFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPAD 347
>sp|O18017|BLM_CAEEL Bloom syndrome protein homolog OS=Caenorhabditis elegans GN=him-6
PE=2 SV=2
Length = 988
Score = 327 bits (838), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 174/372 (46%), Positives = 230/372 (61%), Gaps = 13/372 (3%)
Query: 87 FGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQD 146
FG +R Q++ I + L G D V+M G GKSLCYQLPAV+ G+ +VVSPL SLI+D
Sbjct: 243 FGFNQFRHRQKQCILSTLMGHDTFVLMPTGAGKSLCYQLPAVILPGVTVVVSPLRSLIED 302
Query: 147 QVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEK 206
Q M + LGI LT+ ++ IY L G +K+LYVTPEKIS S R S
Sbjct: 303 QKMKMKELGIGCEALTADLGAPAQEKIYAELGSGNPSIKLLYVTPEKISASGRLNSVFFD 362
Query: 207 CHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQF--PDVPMMALTATATQKVQND 264
H G L+ IDEAHC SQWGHDFRPDY L L+ ++ P VP++ALTATAT K+ D
Sbjct: 363 LHRRGLLARFVIDEAHCVSQWGHDFRPDYTKLSSLREKYANPPVPIIALTATATPKIVTD 422
Query: 265 LMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFS 324
+ L ++ F+S+ R NL Y + K++ + +I+ + K +++ YP +SGIVYC S
Sbjct: 423 ARDHLKMQNSKLFISSFVRDNLKYDLIPKAA--RSLINVVEK-MKQLYPG-KSGIVYCLS 478
Query: 325 RKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDV 384
RKECE V L + G+SA+ YHA ++ N R V W NK VI T+AFGMGI+KPDV
Sbjct: 479 RKECETVQMMLTKAGLSAEVYHAGLNDNLRVSVQRSWIANKFDVICATIAFGMGIDKPDV 538
Query: 385 RFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFYENSG------- 437
RFVIH+SL KS+E YYQE+GRAGRDG+PS CL+ + D R M+ N+
Sbjct: 539 RFVIHYSLPKSIEGYYQETGRAGRDGMPSYCLMLYSYHDSIRLRRMIEEGNTTTGVRSMH 598
Query: 438 LQNLYDIVRYSQ 449
L N+ +V Y +
Sbjct: 599 LNNVLQVVAYCE 610
>sp|Q09811|HUS2_SCHPO ATP-dependent DNA helicase hus2/rqh1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rqh1 PE=1 SV=1
Length = 1328
Score = 326 bits (836), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 157/357 (43%), Positives = 225/357 (63%), Gaps = 10/357 (2%)
Query: 72 TFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR- 130
++ W + F + +R NQ E IN LSG+DV ++M GGGKSLCYQLPAV+
Sbjct: 500 SYPWSKEVLGCLKHKFHLKGFRKNQLEAINGTLSGKDVFILMPTGGGKSLCYQLPAVIEG 559
Query: 131 ---EGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKML 187
G+ LV+SPLLSL+QDQ+ L L IP+ L+ ++ + + L +K+L
Sbjct: 560 GASRGVTLVISPLLSLMQDQLDHLRKLNIPSLPLSGEQPADERRQVISFLMAKNVLVKLL 619
Query: 188 YVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPD 247
YVTPE ++ + L+ + L+ I IDEAHC S WGHDFRPDYK LG+L+ ++
Sbjct: 620 YVTPEGLASNGAITRVLKSLYERKLLARIVIDEAHCVSHWGHDFRPDYKQLGLLRDRYQG 679
Query: 248 VPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKY 307
+P MALTATA + V+ D++ L + C++ S+ NRPNLFY ++ K K + E+ ++
Sbjct: 680 IPFMALTATANEIVKKDIINTLRMENCLELKSSFNRPNLFYEIKPK----KDLYTELYRF 735
Query: 308 IQESYPNSESGIVYCFSRKECEQVAQELRQR-GISADYYHADMDINAREKVHMRWSKNKL 366
I + + ESGI+YC SR CEQVA +LR G+ A +YHA ++ R+++ W
Sbjct: 736 ISNGHLH-ESGIIYCLSRTSCEQVAAKLRNDYGLKAWHYHAGLEKVERQRIQNEWQSGSY 794
Query: 367 QVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPAD 423
++IV T+AFGMG++K DVRFVIHHS KS+E YYQE+GRAGRDG P+ C++F+ D
Sbjct: 795 KIIVATIAFGMGVDKGDVRFVIHHSFPKSLEGYYQETGRAGRDGKPAHCIMFYSYKD 851
>sp|Q9CL21|RECQ_PASMU ATP-dependent DNA helicase RecQ OS=Pasteurella multocida (strain
Pm70) GN=recQ PE=3 SV=1
Length = 632
Score = 323 bits (829), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 157/345 (45%), Positives = 234/345 (67%), Gaps = 13/345 (3%)
Query: 79 ADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVS 138
A DV VFG ++R Q+E+I+A L G+D LVIMA G GKSLCYQ+PA+ EG+ LV+S
Sbjct: 26 ALDVLHAVFGYQSFRKGQEEVIDATLMGKDSLVIMATGNGKSLCYQIPALCFEGLTLVIS 85
Query: 139 PLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSK 198
PL+SL++DQV L A GI A L S+ + +++ + L G LK+LYV+PEK+ +
Sbjct: 86 PLISLMKDQVDQLLANGIEADYLNSSQTFTEQQQVQNKLM--SGTLKLLYVSPEKVMTTS 143
Query: 199 RFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATAT 258
F + C ++S ++IDEAHC SQWGHDFRP+Y LG LK+ FP P+MALTATA
Sbjct: 144 -FFHLISHC----KVSFVAIDEAHCISQWGHDFRPEYTQLGGLKSCFPHAPIMALTATAD 198
Query: 259 QKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESG 318
+ D++ L+++ ++ + +RPN+ Y + EK ++++ +++ +SG
Sbjct: 199 HATRQDILRHLNLQSPHVYIGSFDRPNIRYTLVEKFKP----MEQLCRFVLGQ--KGKSG 252
Query: 319 IVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMG 378
I+YC SR + E++A+ LR +G+SA YHA ++ + RE+V + ++ +QV+V T+AFGMG
Sbjct: 253 IIYCNSRSKVERIAESLRNKGVSAQAYHAGLETSQREQVQRAFQRDNVQVVVATIAFGMG 312
Query: 379 INKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPAD 423
INK +VRFV+H L +S+E+YYQE+GRAGRD LP+E +LF+ PAD
Sbjct: 313 INKSNVRFVVHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPAD 357
>sp|P40724|RECQ_SALTY ATP-dependent DNA helicase RecQ OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=recQ PE=3 SV=3
Length = 609
Score = 323 bits (828), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 158/349 (45%), Positives = 231/349 (66%), Gaps = 13/349 (3%)
Query: 76 DSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIAL 135
+S A V FG +R Q+ II+ LSGRD LV+M GGGKSLCYQ+PA+L +G+ +
Sbjct: 10 ESGAKQVLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTV 69
Query: 136 VVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKIS 195
VVSPL+SL++DQV L A G+ A L ST S+E + + G+ +++LY+ PE++
Sbjct: 70 VVSPLISLMKDQVDQLLANGVAAACLNSTQSREQQLEVMAGCRTGQ--IRLLYIAPERLM 127
Query: 196 KSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTA 255
F+ L + L+++DEAHC SQWGHDFRP+Y LG L+ +FP +P MALTA
Sbjct: 128 LDN-FLDHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTA 182
Query: 256 TATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNS 315
TA + D++ +L + + +S+ +RPN+ YM+ EK +D++ +Y+QE
Sbjct: 183 TADDTTRQDIIRLLGLNDPLIQISSFDRPNIRYMLMEKFKP----LDQLMRYVQEQ--RG 236
Query: 316 ESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAF 375
+SGI+YC SR + E A L+ RGISA YHA ++ R V ++ ++ LQ++V TVAF
Sbjct: 237 KSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLENAIRVDVQEKFQRDDLQIVVATVAF 296
Query: 376 GMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADV 424
GMGINKP+VRFV+H + +++E+YYQE+GRAGRDGLP+E +LF+ PAD+
Sbjct: 297 GMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADM 345
>sp|Q9FT72|RQL3_ARATH ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana
GN=RECQL3 PE=1 SV=1
Length = 713
Score = 317 bits (812), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 156/333 (46%), Positives = 217/333 (65%), Gaps = 4/333 (1%)
Query: 87 FGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQD 146
FG +R Q E I AV+SGRD +M GGGKS+CYQ+PA+ + GI LVVSPL++L+++
Sbjct: 32 FGHADFRGKQLEAIQAVVSGRDCFCLMPTGGGKSICYQIPALAKPGIVLVVSPLIALMEN 91
Query: 147 QVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEK 206
QVM L GI A L+ST + + I++ L+ G+ +++LYVTPE I+ +K FM KL K
Sbjct: 92 QVMALKEKGIAAEYLSSTQATHVKNKIHEDLDSGKPSVRLLYVTPELIA-TKGFMLKLRK 150
Query: 207 CHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLM 266
H G L+LI+IDEAHC S WGHDFRP Y+ L L+ DVP++ALTATA KVQ D++
Sbjct: 151 LHSRGLLNLIAIDEAHCISSWGHDFRPSYRQLSTLRDSLADVPVLALTATAAPKVQKDVI 210
Query: 267 EMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRK 326
+ L++R + S+ NRPN+FY VR K + D + ++ + I+YC R
Sbjct: 211 DSLNLRNPLVLKSSFNRPNIFYEVRYKDLLDNAYTD-LGNLLKSC--GNICAIIYCLERT 267
Query: 327 ECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRF 386
C+ ++ L GIS+ YHA ++ R V W +K Q+IV TVAFGMGI+K DVR
Sbjct: 268 TCDDLSVHLSSIGISSAAYHAGLNSKMRSTVLDDWLSSKKQIIVATVAFGMGIDKKDVRM 327
Query: 387 VIHHSLSKSVETYYQESGRAGRDGLPSECLLFF 419
V H ++ KS+E++YQESGRAGRD LPS +L++
Sbjct: 328 VCHFNIPKSMESFYQESGRAGRDQLPSRSVLYY 360
>sp|Q9FT74|RQL1_ARATH ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana
GN=RECQL1 PE=2 SV=1
Length = 606
Score = 310 bits (794), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 155/350 (44%), Positives = 220/350 (62%), Gaps = 6/350 (1%)
Query: 84 LNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSL 143
L +FG +R Q + A + +D V+M GGGKSLCYQLPA L+ G+ +V+SPLLSL
Sbjct: 199 LVIFGNKVFRPLQHQACRASMERKDCFVLMPTGGGKSLCYQLPATLKAGVTIVISPLLSL 258
Query: 144 IQDQVMCLA-ALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMS 202
IQDQ++ L GIPA L S + + + L + K+LYVTPEKI+ S F+
Sbjct: 259 IQDQIVALNLKFGIPATFLNSQQTSSQAAAVLQELRRDNPSCKLLYVTPEKIAGSSSFLE 318
Query: 203 KLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQ 262
L G L+ +DEAHC SQWGHDFRPDY+ LG LK FP VP+MALTATAT+ V
Sbjct: 319 TLRCLDRKGLLAGFVVDEAHCVSQWGHDFRPDYRELGCLKQNFPRVPVMALTATATESVC 378
Query: 263 NDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYC 322
D+++ L I + + +R NL Y V K+ K + ++ + +++ + + +SGIVYC
Sbjct: 379 QDVLKSLRIPRAPVLKMSFDRINLKYEVIVKT---KEPLKQLQELLRDRFKD-QSGIVYC 434
Query: 323 FSRKECEQVAQELRQRG-ISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINK 381
S+ EC VA+ L ++ + YYHA + R V +W +++++ T+AFGMGI+K
Sbjct: 435 LSKSECVDVAKFLNEKCKVKTVYYHAGVPAKQRVDVQRKWQTGEVRIVCATIAFGMGIDK 494
Query: 382 PDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMV 431
DVRFVIH++LSK+VE+YYQESGRAGRDGL ++C+ ++ D R M+
Sbjct: 495 ADVRFVIHNTLSKAVESYYQESGRAGRDGLQAQCICLYQKKDFSRVVCML 544
>sp|O34748|RECQ_BACSU Probable ATP-dependent DNA helicase RecQ OS=Bacillus subtilis
(strain 168) GN=recQ PE=3 SV=1
Length = 591
Score = 286 bits (731), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 203/603 (33%), Positives = 331/603 (54%), Gaps = 58/603 (9%)
Query: 78 RADDVRLNVFGIPAYRANQQEIINAVLSGR-DVLVIMAAGGGKSLCYQLPAVLREGIALV 136
RA + + FG +R+ Q E I V R + IM GGGKS+CYQ+PA++ EG +V
Sbjct: 4 RAQSLLAHYFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIV 63
Query: 137 VSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEK-GEGELKMLYVTPEKIS 195
+SPL+SL++DQV L GI A + ST S ++ IY+ L EG K+ Y+TPE+++
Sbjct: 64 ISPLISLMKDQVDALEEAGINAAYINSTQSNQE---IYERLNGLKEGAYKLFYITPERLT 120
Query: 196 KSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVP-MMALT 254
S F+ L+ + L++IDEAHC SQWGHDFRP Y+N+ IL + D P +MALT
Sbjct: 121 -SIEFIRILQGID----VPLVAIDEAHCISQWGHDFRPSYRNIEILFRELHDKPVIMALT 175
Query: 255 ATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPN 314
ATAT +V +D+ + LHI+K + +R NL + V + + + IDE Y+Q +
Sbjct: 176 ATATPEVHDDICKQLHIQKENTVYTGFSRENLTFKVVKGENKDRF-IDE---YVQNN--R 229
Query: 315 SESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVA 374
E+GIVY +RKE +++ + L++ + A YH + + R++ R+ ++LQV+V T A
Sbjct: 230 HEAGIVYTATRKEADRIYERLKRNQVRAGRYHGGLADDVRKEQQERFLNDELQVMVATSA 289
Query: 375 FGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMV--- 431
FGMGI+K ++RFV+H + K +E+YYQE+GRAGRDGL SEC+L F P D+ Q ++
Sbjct: 290 FGMGIDKSNIRFVLHAQIPKDMESYYQEAGRAGRDGLASECVLLFSPQDIMVQRFLIEQS 349
Query: 432 FYENSGLQNLYDIVRYSQYPLHWNIEKVRLVIFEKLQQVNLF-----CMVVLAGH----- 481
+E Q+L + + Y + + ++++ ++ + C A H
Sbjct: 350 EHEEKQKQDLKKLRQMVDYCHTEDCLQRFILMYFGEKEPDACGQCGNCTDTRAAHDVTRE 409
Query: 482 AQCIISLLQDIQDNNQRLTMLQLVDKMKIK--LKEIDSD------LKREEIEQL--VLQL 531
AQ ++S + +++ + + Q++ K K L+ SD LK + + ++ ++
Sbjct: 410 AQMVLSCIIRMKERFGKTMVAQVLAGSKNKKVLENGFSDLSTYGILKHQSVGEISDFIEF 469
Query: 532 IIDRVLVRI--GPF------SPGKKIIKLEISSVQKNTADNKKSTKRSLTSSALEFE-LD 582
+I +R+ G F S G+ ++K E+S +K ++T + FE L
Sbjct: 470 LISDDFIRMSDGTFPTLFVSSKGRNVLKGELSVARKEAL-----KAAAITENDELFERLR 524
Query: 583 ELRKELASISGGILPHSVLSSQLIRLISARKPSTMEEASSNHLEKIIGKLKTGKYGSRIL 642
+RKE+A+ G+ P V S Q ++ +S ++P +E S K +G+ K KYG L
Sbjct: 525 MVRKEIAA-EQGVPPFVVFSDQTLKEMSGKQPVNDDELLSI---KGVGEQKRAKYGRLFL 580
Query: 643 EVI 645
+ I
Sbjct: 581 QEI 583
>sp|O94762|RECQ5_HUMAN ATP-dependent DNA helicase Q5 OS=Homo sapiens GN=RECQL5 PE=1 SV=2
Length = 991
Score = 280 bits (717), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 164/384 (42%), Positives = 226/384 (58%), Gaps = 23/384 (5%)
Query: 72 TFEWDS--RADDVRLNVFGIPAYRANQQEIIN-AVLSG-RDVLVIMAAGGGKSLCYQLPA 127
TF +D R VFG +++ QE AV+ G +DV V M G GKSLCYQLPA
Sbjct: 7 TFPFDPERRVRSTLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPA 66
Query: 128 VLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKML 187
+L +GI +VVSPL++LIQDQV L L + L S S ++ K + LE+ + + K+L
Sbjct: 67 LLAKGITIVVSPLIALIQDQVDHLLTLKVRVSSLNSKLSAQERKELLADLEREKPQTKIL 126
Query: 188 YVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPD 247
Y+TPE ++ S F L LS + +DEAHC SQWGHDFRPDY LG L+++
Sbjct: 127 YITPE-MAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGH 185
Query: 248 VPMMALTATATQKVQNDLMEMLHIRKCIK-FVSTINRPNLFYMVREKSSVG--------- 297
P +ALTATAT +VQ D+ LH++K + F + R NLFY V+ K +
Sbjct: 186 APCVALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDF 245
Query: 298 --KVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINARE 355
K + E K + S GIVYC +R+ CEQ+A EL RG++A YHA + + R
Sbjct: 246 CLKALGQEADKGL------SGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERT 299
Query: 356 KVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSEC 415
V W + K+ VIV T++FGMG++K +VRFV H +++KS+ YYQESGRAGRDG PS C
Sbjct: 300 LVQNDWMEEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWC 359
Query: 416 LLFFRPADVPRQSSMVFYENSGLQ 439
L++ D + S ++ E + LQ
Sbjct: 360 RLYYSRNDRDQVSFLIRKEVAKLQ 383
>sp|P50729|RECS_BACSU Probable ATP-dependent DNA helicase RecS OS=Bacillus subtilis
(strain 168) GN=recS PE=3 SV=1
Length = 496
Score = 272 bits (695), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 140/362 (38%), Positives = 223/362 (61%), Gaps = 15/362 (4%)
Query: 87 FGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQD 146
FG +++ QQ+II ++LSG+D + ++ GGGKSLCYQLP + +G+ L+VSPLLSL++D
Sbjct: 12 FGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIVSPLLSLMED 71
Query: 147 QVMCLAALGIP-AHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLE 205
QV L A G A L S ++++ +F+ + + + K LY++PE + +S + KL+
Sbjct: 72 QVQQLKARGEKRAAALNSMLNRQERQFVLEHIHR----YKFLYLSPEAL-QSPYVLEKLK 126
Query: 206 KCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDL 265
+SL IDEAHC S+WGHDFRPDY LG L+ + P++ALTATAT++ D+
Sbjct: 127 SV----PISLFVIDEAHCISEWGHDFRPDYSKLGQLRKKLGHPPVLALTATATKETLQDV 182
Query: 266 MEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSR 325
M +L ++ ++ ++++NRPN+ V + ++I + IQ GIVYC +R
Sbjct: 183 MNLLELQHAVRHLNSVNRPNIALRVENAADTA----EKIDRVIQLVENLQGPGIVYCPTR 238
Query: 326 KECEQVAQELRQRGIS-ADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDV 384
K +++A E++ + S AD+YH ++ R + ++ N+L VI T AFGMG++KPD+
Sbjct: 239 KWAKELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDI 298
Query: 385 RFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFYENSGLQNLYDI 444
R+VIH L ++ E + QE GRAGRDG PS +L P D Q ++ E+ + + D+
Sbjct: 299 RYVIHFHLPQTAEAFMQEIGRAGRDGKPSVSILLRAPGDFELQEQIIQMESVTAEEIADV 358
Query: 445 VR 446
+R
Sbjct: 359 IR 360
>sp|Q14191|WRN_HUMAN Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1
SV=2
Length = 1432
Score = 267 bits (682), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 144/344 (41%), Positives = 213/344 (61%), Gaps = 20/344 (5%)
Query: 87 FGIPAYRANQQEIINAVLSGR-DVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQ 145
FG +++ Q ++I++VL R D + +MA G GKSLC+Q P V I LV+SPL+SL++
Sbjct: 544 FGHSSFKPVQWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPVYVGKIGLVISPLISLME 603
Query: 146 DQVMCLAALGIPAHMLTSTTSKE---DEKFIYKALEKGEGELKMLYVTPEKISKSKRFMS 202
DQV+ L IPA L S S+ D K G+ +++YVTPE S + +
Sbjct: 604 DQVLQLKMSNIPACFLGSAQSENVLTDIKL---------GKYRIVYVTPEYCSGNMGLLQ 654
Query: 203 KLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQ 262
+LE G ++LI++DEAHC S+WGHDFR ++ LG LKT P VP++ALTATA+ ++
Sbjct: 655 QLEA--DIG-ITLIAVDEAHCISEWGHDFRDSFRKLGSLKTALPMVPIVALTATASSSIR 711
Query: 263 NDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESG--IV 320
D++ L++R + +RPNL+ VR K+ G ++ D ++ S G I+
Sbjct: 712 EDIVRCLNLRNPQITCTGFDRPNLYLEVRRKT--GNILQDLQPFLVKTSSHWEFEGPTII 769
Query: 321 YCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGIN 380
YC SRK +QV ELR+ +S YHA M + R+ +H R+ ++++Q ++ T+AFGMGIN
Sbjct: 770 YCPSRKMTQQVTGELRKLNLSCGTYHAGMSFSTRKDIHHRFVRDEIQCVIATIAFGMGIN 829
Query: 381 KPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADV 424
K D+R VIH+ K +E+YYQE GRAGRDGL S C + + PAD+
Sbjct: 830 KADIRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADI 873
>sp|O93530|WRN_XENLA Werner syndrome ATP-dependent helicase homolog OS=Xenopus laevis
GN=wrn PE=2 SV=1
Length = 1436
Score = 266 bits (680), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 144/344 (41%), Positives = 214/344 (62%), Gaps = 18/344 (5%)
Query: 87 FGIPAYRANQQEIINAVL-SGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQ 145
FG +++ Q +++++VL RD LV+MA G GKSLCYQ V GI +V+ PL+SL++
Sbjct: 485 FGHSSFKPVQWKVVHSVLRERRDNLVVMATGYGKSLCYQFAPVYTSGIGIVICPLISLME 544
Query: 146 DQVMCLAALGIPAHMLTSTTSK---EDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMS 202
DQV+ L I + L S SK +D K +G+++++Y+TPE S R +S
Sbjct: 545 DQVLQLEMSNISSCFLGSAQSKNVLQDVK---------DGKMRVIYMTPEFCS---RGIS 592
Query: 203 KLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQ 262
L+ + ++LI+IDEAHC S+WGHDFR Y++LG LK P+VP++ALTATA+ ++
Sbjct: 593 LLQDLDNRYGITLIAIDEAHCISEWGHDFRSAYRSLGSLKRMLPNVPIVALTATASPSIR 652
Query: 263 NDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDE--IAKYIQESYPNSESGIV 320
D+ + L++ ++ +RPNL+ V K++ + + + I K + + IV
Sbjct: 653 EDITKSLNLHNPQVTCTSFDRPNLYLDVARKTTNISIDLRQFLIKKQQGSGWEFEGATIV 712
Query: 321 YCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGIN 380
YC +RK EQV EL + GI+ YHA M I R +VH R+ ++++ +V TVAFGMGIN
Sbjct: 713 YCPTRKTSEQVTAELIKLGIACGTYHAGMGIKQRREVHHRFMRDEIHCVVATVAFGMGIN 772
Query: 381 KPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADV 424
KPD+R VIH+ K +E+YYQE GRAGRDGLPS C + AD+
Sbjct: 773 KPDIRKVIHYGAPKEMESYYQEIGRAGRDGLPSCCHALWAQADM 816
>sp|O09053|WRN_MOUSE Werner syndrome ATP-dependent helicase homolog OS=Mus musculus
GN=Wrn PE=1 SV=3
Length = 1401
Score = 260 bits (664), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 140/344 (40%), Positives = 213/344 (61%), Gaps = 21/344 (6%)
Query: 87 FGIPAYRANQQEIINAVLSGR-DVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQ 145
FG +++ Q ++I++VL R D +V+MA G GKSLC+Q P V I +V+SPL+SL++
Sbjct: 508 FGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYTGKIGIVISPLISLME 567
Query: 146 DQVMCLAALGIPAHMLTSTTSKE---DEKFIYKALEKGEGELKMLYVTPEKISKSKRFMS 202
DQV+ L +PA +L S SK D K G+ +++Y+TPE S + +
Sbjct: 568 DQVLQLELSNVPACLLGSAQSKNILGDVKL---------GKYRVIYITPEFCSGNLDLLQ 618
Query: 203 KLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQ 262
+L+ + ++LI++DEAHC S+WGHDFR ++ LG LKT P VP++AL+ATA+ ++
Sbjct: 619 QLDS---SIGITLIAVDEAHCISEWGHDFRSSFRMLGSLKTALPLVPVIALSATASSSIR 675
Query: 263 NDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVID---EIAKYIQESYPNSESGI 319
D++ L+++ + +RPNL+ V K+ G ++ D + + ++ I
Sbjct: 676 EDIISCLNLKDPQITCTGFDRPNLYLEVGRKT--GNILQDLKPFLVRKASSAWEFEGPTI 733
Query: 320 VYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGI 379
+YC SRK EQV EL + ++ YHA M I+ R+ VH R+ ++++Q +V TVAFGMGI
Sbjct: 734 IYCPSRKMTEQVTAELGKLNLACRTYHAGMKISERKDVHHRFLRDEIQCVVATVAFGMGI 793
Query: 380 NKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPAD 423
NK D+R VIH+ K +E+YYQE GRAGRDGL S C L + PAD
Sbjct: 794 NKADIRKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHLLWAPAD 837
>sp|Q5UPX0|YR290_MIMIV Putative ATP-dependent RNA helicase R290 OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_R290 PE=3 SV=1
Length = 548
Score = 256 bits (654), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 139/351 (39%), Positives = 208/351 (59%), Gaps = 12/351 (3%)
Query: 86 VFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQ 145
V+G +R Q EIIN V++G DV I+ GKSLC+Q+PA+ + A+++SPL+SL++
Sbjct: 24 VYGYDNFRPRQYEIINKVINGEDVCAILMTSAGKSLCFQIPALYLDKPAIIISPLISLME 83
Query: 146 DQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLE 205
DQ + L LGI + S E++ + K + + + K +YV+PE + K + KLE
Sbjct: 84 DQRLILEKLGISSCCYNSNV--ENKAQMRKDIM--QFKYKFIYVSPESVVHLKDLIVKLE 139
Query: 206 KCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDL 265
+SLI+IDEAHC S +G DFR Y+ + K P+VP++ALTATAT V D+
Sbjct: 140 DFQG---ISLIAIDEAHCISAYGFDFRTAYREITFFKEILPNVPILALTATATNIVAKDI 196
Query: 266 MEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSR 325
++L ++ ++ +RPNL+ VR KS K ++I I + YPN +S I+YC ++
Sbjct: 197 CKVLQLKTNEPIKASFDRPNLYLEVRTKS---KNPANDIVPIINK-YPN-QSVIIYCLTK 251
Query: 326 KECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVR 385
KE +++A L + YHA + + K H + NK++++V T+AFGMGINKPDVR
Sbjct: 252 KETQKIADILTVHKVVCGIYHAGLSNEHKTKTHTNFINNKIKIVVATIAFGMGINKPDVR 311
Query: 386 FVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFYENS 436
VIH+ K++E YYQE GRAGRDG S C F+ D Q + N+
Sbjct: 312 VVIHYGAPKNIEGYYQEIGRAGRDGEKSYCYAFYNFQDFMIQRRFISQNNN 362
>sp|Q19546|WRN_CAEEL Probable Werner syndrome ATP-dependent helicase homolog 1
OS=Caenorhabditis elegans GN=wrn-1 PE=3 SV=2
Length = 1056
Score = 254 bits (649), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 133/345 (38%), Positives = 213/345 (61%), Gaps = 19/345 (5%)
Query: 87 FGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQD 146
FG +R Q +++ VL G+D V+M+ G GKS+CYQLP++L + +VVSPL+SL+ D
Sbjct: 223 FGHKGFREKQWDVVRNVLGGKDQFVLMSTGYGKSVCYQLPSLLLNSMTVVVSPLISLMND 282
Query: 147 QVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEK 206
QV L + GI A L +++ + + + + ++ +Y++PE ++ S++ + L
Sbjct: 283 QVTTLVSKGIDAVKLDGHSTQIEWDQVANNMHR----IRFIYMSPEMVT-SQKGLELLTS 337
Query: 207 CHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILK--TQFPDVPMMALTATATQKVQND 264
C +SL++IDEAHC SQWGHDFR Y++L ++ + ++PM+ALTATAT +V++D
Sbjct: 338 CRK--HISLLAIDEAHCVSQWGHDFRNSYRHLAEIRNRSDLCNIPMIALTATATVRVRDD 395
Query: 265 LMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGK-----VVIDEIAKYIQESYPNSESGI 319
++ L +RK + ++ +R NL+ V + + + DE+ K P I
Sbjct: 396 VIANLRLRKPLITTTSFDRKNLYISVHSSKDMAEDLGLFMKTDEV-KGRHFGGPT----I 450
Query: 320 VYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGI 379
+YC +++ + V LR+ G+ + +YHA + N REK H + ++K+ IV TVAFGMGI
Sbjct: 451 IYCQTKQMVDDVNCVLRRIGVRSAHYHAGLTKNQREKAHTDFMRDKITTIVATVAFGMGI 510
Query: 380 NKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADV 424
+KPDVR VIH+ ++E+YYQE GRAGRDG PS C +F+ P D+
Sbjct: 511 DKPDVRNVIHYGCPNNIESYYQEIGRAGRDGSPSICRVFWAPKDL 555
>sp|P73421|RECQ_SYNY3 ATP-dependent DNA helicase RecQ OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=recQ PE=3 SV=1
Length = 478
Score = 204 bits (518), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 124/345 (35%), Positives = 196/345 (56%), Gaps = 32/345 (9%)
Query: 86 VFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQ 145
++G +R Q E+I+ +L+ RD LV++ GGGKS+C+QLPA+L EG+ LVVSPL++L++
Sbjct: 14 IWGYDHFRYPQGEVIDCLLARRDCLVVLPTGGGKSICFQLPALLGEGLTLVVSPLVALME 73
Query: 146 DQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLE 205
DQV L +PA L S S+ + K + L + + +L ++PE + S+ + L
Sbjct: 74 DQVQSLRRQNLPAACLHSQLSRPERKQVLYQLGQQQLKLLY--LSPETL-LSEPVWNLLR 130
Query: 206 KCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFP----DVPMMALTATATQKV 261
+ +L I +DEAHC QWG FRP Y+ LG L+ +P+ A TATA ++
Sbjct: 131 QPQV--KLQGIMLDEAHCLVQWGDSFRPAYRRLGALRRGLGRDKGQIPLAAFTATADRQQ 188
Query: 262 QNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDE----------IAKYIQES 311
QN ++E L++R F + +RP L V K+V+ E + K++QES
Sbjct: 189 QNLIVEGLNLRSPECFQVSPHRPQLHLKV-------KMVLSEYCRRQQLRRFLLKHLQES 241
Query: 312 YPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVG 371
G++Y +R +AQ L++RG ++ YH + + R ++ +W ++ +V
Sbjct: 242 ------GLIYVRTRTMAINLAQWLQERGFDSEAYHGGLGPHQRRQLEQKWLTGQISSVVC 295
Query: 372 TVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECL 416
T AFG+GI+KPD R+V+H+ + Y QE GRAGRD P+ECL
Sbjct: 296 TNAFGLGIDKPDTRWVLHYQAPLMLMDYLQEVGRAGRDLQPAECL 340
>sp|O94761|RECQ4_HUMAN ATP-dependent DNA helicase Q4 OS=Homo sapiens GN=RECQL4 PE=1 SV=1
Length = 1208
Score = 185 bits (470), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 123/359 (34%), Positives = 183/359 (50%), Gaps = 32/359 (8%)
Query: 84 LNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVL----REGIALVVSP 139
L G A+R Q+ + +LSG L+++ G GKSLCYQLPA+L + LVVSP
Sbjct: 473 LEQLGHQAFRPGQERAVMRILSGISTLLVLPTGAGKSLCYQLPALLYSRRSPCLTLVVSP 532
Query: 140 LLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKR 199
LLSL+ DQV L A + + T K+ E + K ++ +L +TPE + +
Sbjct: 533 LLSLMDDQVSGLPPCLKAACIHSGMTRKQRESVLQKIRA---AQVHVLMLTPEALVGA-- 587
Query: 200 FMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDY-KNLGILKTQFPDVPMMALTATAT 258
L ++ IDEAHC SQW H+FRP Y + +L+ + + LTATAT
Sbjct: 588 --GGLPPAAQLPPVAFACIDEAHCLSQWSHNFRPCYLRVCKVLRERMGVHCFLGLTATAT 645
Query: 259 QKVQNDLMEMLHIRKCIKFVSTINRP-NLFYMVREKSSVGKVVIDEI-AKYIQESYPNSE 316
++ +D+ + L + + P NL V + ++ + K Q N +
Sbjct: 646 RRTASDVAQHLAVAEEPDLHGPAPVPTNLHLSVSMDRDTDQALLTLLQGKRFQ----NLD 701
Query: 317 SGIVYCFSRKECEQVAQELRQ--------------RGISADYYHADMDINAREKVHMRWS 362
S I+YC R++ E++A LR +A+ YHA M R +V +
Sbjct: 702 SIIIYCNRREDTERIAALLRTCLHAAWVPGSGGRAPKTTAEAYHAGMCSRERRRVQRAFM 761
Query: 363 KNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRP 421
+ +L+V+V TVAFGMG+++PDVR V+H L S E+Y Q GRAGRDG P+ C LF +P
Sbjct: 762 QGQLRVVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAVGRAGRDGQPAHCHLFLQP 820
>sp|Q0WVW7|RQL5_ARATH ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis thaliana
GN=RECQL5 PE=2 SV=2
Length = 911
Score = 185 bits (470), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 125/338 (36%), Positives = 193/338 (57%), Gaps = 15/338 (4%)
Query: 86 VFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQ 145
V+G ++R Q + I +L G ++++ G GKSLCYQ+PA++ GI LVVSPL+SL+
Sbjct: 264 VYGYDSFRDGQLQAIKMILGGSSTMLVLPTGAGKSLCYQIPAMILPGITLVVSPLVSLMI 323
Query: 146 DQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLE 205
DQ+ L ++ I +L+S+ E+ + L+ EG +K+L+V+PE++ + F+S
Sbjct: 324 DQLKHLPSI-IKGGLLSSSQRPEEATETLRKLK--EGIIKVLFVSPERLLNVE-FLSMFR 379
Query: 206 KCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNL--GILKTQFPDVPMMALTATATQKVQN 263
+ +SL+ +DEAHC S+W H+FRP Y L +L ++ ++A+TATAT
Sbjct: 380 ---MSLSVSLVVVDEAHCVSEWSHNFRPSYMRLKASMLFSELKAECILAMTATATTMTLQ 436
Query: 264 DLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSE--SGIVY 321
+M L I + R N V S G + ++ + ES P E S IVY
Sbjct: 437 AVMSSLEIPSTNLIQKSQLRDNFELSV---SLSGANRMKDLL-ILMESPPYKEIRSIIVY 492
Query: 322 CFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINK 381
C + E + +++ LR I+A YH+ + R ++ + NK++V+V TVAFGMG++K
Sbjct: 493 CKFQYETDMISKYLRDNNINAKGYHSGLPAKDRVRIQESFCSNKIRVVVATVAFGMGLDK 552
Query: 382 PDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFF 419
DV VIH S+ S+E Y QE GRAGRDG S C LF+
Sbjct: 553 GDVGAVIHFSVPGSMEEYVQEIGRAGRDGRLSYCHLFY 590
>sp|Q75NR7|RECQ4_MOUSE ATP-dependent DNA helicase Q4 OS=Mus musculus GN=Recql4 PE=2 SV=2
Length = 1216
Score = 185 bits (469), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 121/359 (33%), Positives = 177/359 (49%), Gaps = 27/359 (7%)
Query: 84 LNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVL----REGIALVVSP 139
L G A+R Q+ I +LSG L+++ G GKSLCYQLPA+L + LVVSP
Sbjct: 490 LERLGYRAFRPGQERAIMRILSGISTLLVLPTGAGKSLCYQLPALLYAQRSPCLTLVVSP 549
Query: 140 LLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEK-ISKSK 198
LLSL+ DQV L + A + + T K+ E + K ++ +L V+PE +
Sbjct: 550 LLSLMDDQVSDLPSCLKAACLHSGMTKKQRESVLKKVRA---AQVHVLIVSPEALVGCGA 606
Query: 199 RFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDY-KNLGILKTQFPDVPMMALTATA 257
R L + ++ IDE HC SQW H+FRP Y + +L+ + LTATA
Sbjct: 607 RGPGSLPQAAQLPPIAFACIDEVHCLSQWSHNFRPCYLRVCKVLREHMGVRCFLGLTATA 666
Query: 258 TQKVQNDLMEMLHIRKCIKFVSTINRP-NLFYMVREKSSVGKVVIDEIAKYIQESYPNSE 316
T+ D+ + L I + + N P NL V + ++ + + + +
Sbjct: 667 TRSTARDVAQHLGIAGEFELSGSANIPANLHLSVSMDRDSDQALVTLLQG---DRFRTLD 723
Query: 317 SGIVYCFSRK----------ECEQVAQELRQRGIS----ADYYHADMDINAREKVHMRWS 362
S I+YC + C + + R RG A+ YHA M R +V +
Sbjct: 724 SVIIYCTRERIQNGWLALLRTCLSMVGDSRPRGCGPEAIAEAYHAGMSSQERRRVQQAFM 783
Query: 363 KNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRP 421
+ L+++V TVAFGMG+++PDVR V+H L S E+Y Q GRAGRDG P+ C LF P
Sbjct: 784 RGHLRMVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAIGRAGRDGKPAHCHLFMHP 842
>sp|Q9FT69|RQSIM_ARATH ATP-dependent DNA helicase Q-like SIM OS=Arabidopsis thaliana
GN=RECQSIM PE=2 SV=1
Length = 858
Score = 167 bits (424), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/227 (40%), Positives = 139/227 (61%), Gaps = 18/227 (7%)
Query: 75 WDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIA 134
W+ R + + N FGI + R+ Q+E ++ ++ +D LV+ A G GKSLC+Q+PA+L +
Sbjct: 152 WEKRVNSILRNRFGISSLRSFQREALSTWVAHKDCLVLAATGSGKSLCFQIPALLTGKVV 211
Query: 135 LVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKI 194
+V+SPL+SL+ DQ + L+ + A L S + D KA+ +G +++YV PE +
Sbjct: 212 VVISPLISLMHDQCLKLSRHKVSACFLGS--GQLDNCIEEKAM---QGMYQIIYVCPETV 266
Query: 195 SKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFP-------- 246
+ + + KL K H ++L +IDEAHC S+WGHDFRP Y+ L +L+ F
Sbjct: 267 VRLIKPLQKLAKTHG---IALFAIDEAHCVSKWGHDFRPHYRKLSVLRENFCASNLEFLE 323
Query: 247 -DVPMMALTATATQKVQNDLMEMLHIRKCIKFV-STINRPNLFYMVR 291
DVP+MALTATAT VQ D++E LH+ K K V ++ RPNL + V+
Sbjct: 324 YDVPIMALTATATVNVQEDILESLHLSKETKIVLTSFFRPNLQFSVK 370
Score = 100 bits (250), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 81/135 (60%), Gaps = 9/135 (6%)
Query: 319 IVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMG 378
I+Y +RKE +A+ L G+ A Y+A + +VH + NKLQV+V T+AFGMG
Sbjct: 501 IIYVPTRKESVNIAKYLCGVGLKAAAYNASLPKKHLRQVHQDFHDNKLQVVVATIAFGMG 560
Query: 379 INKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFYENSGL 438
I+K +VR +IH+ +S+E YYQE+GRAGRDG +EC+L+ AD+ R +++ S
Sbjct: 561 IDKKNVRKIIHYGWLQSLEAYYQEAGRAGRDGELAECVLY---ADLSRAPTLLPSRRSKE 617
Query: 439 QN------LYDIVRY 447
Q L D RY
Sbjct: 618 QTEQAYKMLSDCFRY 632
>sp|Q1RKN3|TLH2_SCHPO ATP-dependent DNA helicase tlh2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=tlh2 PE=2 SV=1
Length = 1919
Score = 96.7 bits (239), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 88/348 (25%), Positives = 157/348 (45%), Gaps = 36/348 (10%)
Query: 97 QEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREG----------IALVVSPLLSLIQD 146
Q + ++L+ +++ ++ GGGKSL + +PA++ + + LV+ P++SL QD
Sbjct: 1197 QSVYFSLLNRMNLITVLPTGGGKSLSFLIPALIEKKRQTPGKVMNMVTLVLVPMMSLRQD 1256
Query: 147 QVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEK 206
++ + G +L + + K + LE +L +L + RF L
Sbjct: 1257 MMLRVNEKG----LLVCSGNWTAFKDVRLTLETQLPDLFILTYESALTNSGLRFFESLAT 1312
Query: 207 CHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLM 266
GRL+ + IDEAH G +R L + P+ L+AT ++ +
Sbjct: 1313 ---LGRLARVVIDEAHLLLTSG-AWRTALSRASRLSGLY--APLHLLSATFPRQ-----L 1361
Query: 267 EMLHIRK-CIKFV----STINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVY 321
EM+ + C F ++ R N+FY + + ++ + + I++
Sbjct: 1362 EMVARQTFCTNFYVLRETSTARENIFYFLHPYDNTEFLLDLRTLMKRTKVFEGDGRAIIF 1421
Query: 322 CFSRKECEQVAQELRQRGISA----DYYHADMDINAREKVH--MRWSKNKLQVIVGTVAF 375
C ++K+ E + + L Q + A Y D+ R+ R + K ++++ T AF
Sbjct: 1422 CRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMIATKAF 1481
Query: 376 GMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPAD 423
G+GIN VR V+H+ L S Y QE+GRAGRDG + LF+ D
Sbjct: 1482 GLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDGKYAIAALFYEKYD 1529
>sp|Q5EAK4|TLH1_SCHPO ATP-dependent DNA helicase tlh1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=tlh1 PE=2 SV=1
Length = 2100
Score = 96.3 bits (238), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 86/347 (24%), Positives = 155/347 (44%), Gaps = 34/347 (9%)
Query: 97 QEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREG----------IALVVSPLLSLIQD 146
Q + ++L+ +++ ++ GGGKSL + +PA++ + + LV+ P++SL QD
Sbjct: 1378 QSVYFSLLNRMNLITVLPTGGGKSLSFLIPALIEKKRQTPGKVMNMVTLVLVPMMSLRQD 1437
Query: 147 QVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEK 206
++ + G +L + + K + LE +L +L + RF L
Sbjct: 1438 MMLRVNEKG----LLVCSGNWTAFKDVRLTLETQLPDLFILTYESALTNSGLRFFESLAT 1493
Query: 207 CHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLM 266
GRL+ + IDEAH G +R L + P+ L+AT ++++
Sbjct: 1494 ---LGRLARVVIDEAHLLLTSG-AWRTALSRASRLSGLY--APLHLLSATFPRQLEMVAR 1547
Query: 267 EMLHIRKCIKFV----STINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYC 322
+ C F ++ R N+FY + + ++ + + I++C
Sbjct: 1548 QTF----CTNFYVLRETSTARENIFYFLHPYDNTEFLLDLRTLMKRTKVFEGDGRAIIFC 1603
Query: 323 FSRKECEQVAQELRQRGISA----DYYHADMDINAREKVH--MRWSKNKLQVIVGTVAFG 376
++K+ E + + L Q + A Y D+ R+ R + K ++++ T AFG
Sbjct: 1604 RTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMIATKAFG 1663
Query: 377 MGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPAD 423
+GIN VR V+H+ L S Y QE+GRAGRDG + LF+ D
Sbjct: 1664 LGINYMGVRLVVHYGLPASSMDYVQETGRAGRDGKYAIAALFYEKYD 1710
>sp|Q6FLF3|DBP2_CANGA ATP-dependent RNA helicase DBP2 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=DBP2 PE=3 SV=1
Length = 544
Score = 87.8 bits (216), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 88/364 (24%), Positives = 159/364 (43%), Gaps = 28/364 (7%)
Query: 103 VLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLT 162
LSGRD++ I A G GK+L Y LP + + + PLLS ++ + A P L
Sbjct: 144 ALSGRDMVGIAATGSGKTLSYCLPGI----VHINAQPLLSPGDGPIVLVLA---PTRELA 196
Query: 163 STTSKEDEKF----------IYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCH-HAG 211
KE KF +Y + +G+ +++ I+ R + LE +
Sbjct: 197 VQIQKECSKFGKSSRIRNTCVYGGVPRGQQIRELIRGAEIVIATPGRLIDMLEAGKTNLK 256
Query: 212 RLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLH- 270
R++ + +DEA G F P + I+ PD + +AT ++VQ + L+
Sbjct: 257 RVTYLVLDEADRMLDMG--FEPQIRK--IVDQIRPDRQTLMWSATWPKEVQQLARDYLND 312
Query: 271 -IRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGI-VYCFSRKEC 328
I+ I + N+ +V S K D + K++ + + ES I ++ +++ C
Sbjct: 313 PIQVQIGSLELAASHNITQLVEVVSEFEKR--DRLVKHLDTASQDKESKILIFASTKRTC 370
Query: 329 EQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVI 388
+++ LRQ G A H D D R+ V + ++V T GI+ + FV+
Sbjct: 371 DEITSYLRQDGWPALAIHGDKDQRERDWVLNEFRTGNSPIMVATDVAARGIDVKGINFVV 430
Query: 389 HHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFYENSGLQNLY-DIVRY 447
++ + ++E Y GR GR G + FF + +S++ QN+ ++++Y
Sbjct: 431 NYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEDNKSLGASLISIMREAKQNIPEELMKY 490
Query: 448 SQYP 451
+ P
Sbjct: 491 DRRP 494
>sp|Q755N4|DBP2_ASHGO ATP-dependent RNA helicase DBP2 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DBP2
PE=3 SV=2
Length = 557
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 83/335 (24%), Positives = 143/335 (42%), Gaps = 27/335 (8%)
Query: 103 VLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLT 162
LSGRD++ + A G GK+L Y LP + + + PLLS V+ + A P L
Sbjct: 148 ALSGRDMIGVAATGSGKTLSYCLPGI----VHINAQPLLSPGDGPVVLVLA---PTRELA 200
Query: 163 STTSKEDEKF----------IYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCH-HAG 211
KE KF +Y + K + + I+ R + LE +
Sbjct: 201 VQIQKECSKFGRSSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLK 260
Query: 212 RLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLH- 270
R++ + +DEA G F P + I+ PD + +AT ++VQ + LH
Sbjct: 261 RVTYLVLDEADRMLDMG--FEPQIRK--IVDQIRPDRQTLMWSATWPKEVQQLARDYLHD 316
Query: 271 -IRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIV-YCFSRKEC 328
I+ I + + +V S K D + K+++ + + +S I+ + +++ C
Sbjct: 317 PIQVNIGSLELAASHTITQLVEVVSDFDKR--DRLVKHLEIASKDKDSKIIIFASTKRTC 374
Query: 329 EQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVI 388
+++ LRQ G A H D R+ V + + ++V T GI+ + FVI
Sbjct: 375 DEITSYLRQDGWPALAIHGDKQQQERDWVLNEFRTGRSPIMVATDVAARGIDVKGINFVI 434
Query: 389 HHSLSKSVETYYQESGRAGRDGLPSECLLFFRPAD 423
++ + ++E Y GR GR G + FF A+
Sbjct: 435 NYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEAN 469
>sp|Q6CIV2|DBP2_KLULA ATP-dependent RNA helicase DBP2 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=DBP2 PE=3 SV=1
Length = 554
Score = 80.1 bits (196), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 85/369 (23%), Positives = 157/369 (42%), Gaps = 33/369 (8%)
Query: 103 VLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLT 162
LSGRD++ + A G GK+L Y LP + + + PLLS ++ + A P L
Sbjct: 147 ALSGRDMIGVAATGSGKTLSYCLPGI----VHINAQPLLSPGDGPIVLVLA---PTRELA 199
Query: 163 STTSKEDEKF----------IYKALEKGEGELKMLYVTPEKISKSKRFMSKLE-KCHHAG 211
KE KF +Y + K + + I+ R + LE +
Sbjct: 200 VQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLK 259
Query: 212 RLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLH- 270
R++ + +DEA G F P + I+ PD + +AT ++V+ + LH
Sbjct: 260 RVTYLVLDEADRMLDMG--FEPQIRK--IVDQIRPDRQTLMWSATWPKEVKQLASDYLHD 315
Query: 271 -IRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIV-YCFSRKEC 328
I+ I + + +V + K D +AK+++ + + +S I+ + +++ C
Sbjct: 316 PIQVQIGSLELSASHTITQIVEVLTDFEKR--DRLAKHLETASQDQDSKIIIFASTKRTC 373
Query: 329 EQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVI 388
+++ LR G A H D N R+ V + + ++V T GI+ + +VI
Sbjct: 374 DEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGIDVKGINYVI 433
Query: 389 HHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFYENSGLQNL------Y 442
++ + ++E Y GR GR G + FF + ++++ Q++ Y
Sbjct: 434 NYDMPGNIEDYVHRIGRTGRAGSTGTAISFFTEGNKSLGAALIKIMREAKQDIPEELRRY 493
Query: 443 DIVRYSQYP 451
D +Y Q+P
Sbjct: 494 DRGQYGQHP 502
>sp|A5DL80|DBP2_PICGU ATP-dependent RNA helicase DBP2 OS=Meyerozyma guilliermondii
(strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC
10279 / NRRL Y-324) GN=DBP2 PE=3 SV=3
Length = 554
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 84/350 (24%), Positives = 147/350 (42%), Gaps = 27/350 (7%)
Query: 88 GIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQ 147
G P A Q + LSGRD++ I A G GK+L Y LP++ + + PLL
Sbjct: 144 GFPKPTAIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPSI----VHINAQPLLGPGDGP 199
Query: 148 VMCLAALGIPAHMLTSTTSKEDEKF----------IYKALEKGEGELKMLYVTPEKISKS 197
++ + A P L +E KF IY KG+ + I+
Sbjct: 200 IVLVLA---PTRELAVQIQQECSKFGASSRIRNTCIYGGAPKGQQIRDLARGVEICIATP 256
Query: 198 KRFMSKLEKCH-HAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTAT 256
R + LE + R++ + +DEA G F P + I+ PD + +AT
Sbjct: 257 GRLIDMLETGKTNLRRVTYLVLDEADRMLDMG--FEPQIRK--IVDQIRPDRQTLMWSAT 312
Query: 257 ATQKVQNDLMEMLH--IRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPN 314
++VQ + L+ I+ I + + +V S K D + K+++ + +
Sbjct: 313 WPKEVQTLTRDYLNDPIQVTIGSLELAASHTITQIVEVLSEFEKR--DRLVKHLETATAD 370
Query: 315 SESGI-VYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTV 373
E+ + ++ +++ C+++ LR G A H D N R+ V + K ++V T
Sbjct: 371 KEAKVLIFSSTKRACDEITSYLRADGWPALAIHGDKQQNERDWVLREFKTGKSPIMVATD 430
Query: 374 AFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPAD 423
GI+ + +VI++ + ++E Y GR GR G + F A+
Sbjct: 431 VAARGIDVKGISYVINYDMPGNIEDYVHRIGRTGRAGTTGTAVSLFTEAN 480
>sp|Q7SBC6|DBP2_NEUCR ATP-dependent RNA helicase dbp-2 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=dbp-2 PE=3 SV=2
Length = 562
Score = 76.6 bits (187), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 143/347 (41%), Gaps = 27/347 (7%)
Query: 88 GIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQ 147
G PA A Q + LSGRDV+ I G GK+L Y LPA+ + + PLL+
Sbjct: 151 GFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAI----VHINAQPLLAPGDGP 206
Query: 148 VMCLAALGIPAHMLTSTTSKEDEKF----------IYKALEKGEGELKMLYVTPEKISKS 197
++ + A P L +E KF +Y + KG + I+
Sbjct: 207 IVLILA---PTRELAVQIQQEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATP 263
Query: 198 KRFMSKLEKCH-HAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTAT 256
R + LE + R++ + +DEA G F P + I+ PD + +AT
Sbjct: 264 GRLIDMLESGKTNLRRVTYLVLDEADRMLDMG--FEPQIRK--IIGQIRPDRQTLMWSAT 319
Query: 257 ATQKVQN----DLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESY 312
++V+N L + + + ++ +R V +S +I + K I E
Sbjct: 320 WPKEVRNLAADFLTDFIQVNIGSMDLAANHRITQIVEVVSESEKRDRMIKHLEK-IMEGR 378
Query: 313 PNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGT 372
N +++ +++ + + + LRQ G A H D N R+ V ++ K ++V T
Sbjct: 379 ENQNKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSPIMVAT 438
Query: 373 VAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFF 419
GI+ ++ V+++ + E Y GR GR G + FF
Sbjct: 439 DVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFF 485
>sp|Q59LU0|DBP2_CANAL ATP-dependent RNA helicase DBP2 OS=Candida albicans (strain SC5314
/ ATCC MYA-2876) GN=DBP2 PE=3 SV=2
Length = 562
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 86/348 (24%), Positives = 147/348 (42%), Gaps = 31/348 (8%)
Query: 88 GIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAV--------LREG---IALV 136
G P Q + LSGRD++ I A G GK+L Y LP++ L+ G I LV
Sbjct: 146 GFPKPTPIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPSIVHINAQPQLQYGDGPIVLV 205
Query: 137 VSPLLSL-IQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKIS 195
++P L +Q Q C + G +S+ +Y KG + I+
Sbjct: 206 LAPTRELAVQIQTEC-SKFG--------KSSRIRNTCVYGGAPKGPQIRDLARGVEICIA 256
Query: 196 KSKRFMSKLEKCH-HAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALT 254
R + LE + R++ + +DEA G F P + I+ PD + +
Sbjct: 257 TPGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMG--FEPQIRK--IVDQIRPDRQTLMWS 312
Query: 255 ATATQKVQNDLMEMLH--IRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESY 312
AT ++VQ + L+ I+ I + + +V K D + K+++ +
Sbjct: 313 ATWPKEVQQLTRDYLNDPIQVTIGSLELAASHTITQLVEVIDEFSKR--DRLVKHLESAL 370
Query: 313 PNSESGI-VYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVG 371
++ I V+ +++ C+++ LR G A H D + N R+ V + K K ++V
Sbjct: 371 NEKDNKILVFASTKRTCDEITTYLRSDGWPALAIHGDKEQNERDWVLDEFRKGKTSIMVA 430
Query: 372 TVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFF 419
T GI+ + VI++ + ++E Y GR GR G + FF
Sbjct: 431 TDVAARGIDVKGITHVINYDMPGNIEDYVHRIGRTGRGGASGTAISFF 478
>sp|A6ZRX0|DBP2_YEAS7 ATP-dependent RNA helicase DBP2 OS=Saccharomyces cerevisiae (strain
YJM789) GN=DBP2 PE=3 SV=1
Length = 546
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 77/331 (23%), Positives = 143/331 (43%), Gaps = 27/331 (8%)
Query: 103 VLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLT 162
LSGRD++ I A G GK+L Y LP + + + PLL+ ++ + A P L
Sbjct: 147 ALSGRDMVGIAATGSGKTLSYCLPGI----VHINAQPLLAPGDGPIVLVLA---PTRELA 199
Query: 163 STTSKEDEKF----------IYKALEKGEGELKMLYVTPEKISKSKRFMSKLE-KCHHAG 211
E KF +Y + K + + + I+ R + LE +
Sbjct: 200 VQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDLSRGSEIVIATPGRLIDMLEIGKTNLK 259
Query: 212 RLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLH- 270
R++ + +DEA G F P + I+ PD + +AT ++V+ + L+
Sbjct: 260 RVTYLVLDEADRMLDMG--FEPQIRK--IVDQIRPDRQTLMWSATWPKEVKQLAADYLND 315
Query: 271 -IRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSE-SGIVYCFSRKEC 328
I+ + + N+ +V S K D + KY++ + ++E +++ +++ C
Sbjct: 316 PIQVQVGSLELSASHNITQIVEVVSDFEKR--DRLNKYLETASQDNEYKTLIFASTKRMC 373
Query: 329 EQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVI 388
+ + + LR+ G A H D D R+ V + + ++V T GI+ + +VI
Sbjct: 374 DDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAARGIDVKGINYVI 433
Query: 389 HHSLSKSVETYYQESGRAGRDGLPSECLLFF 419
++ + ++E Y GR GR G + FF
Sbjct: 434 NYDMPGNIEDYVHRIGRTGRAGATGTAISFF 464
>sp|P24783|DBP2_YEAST ATP-dependent RNA helicase DBP2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=DBP2 PE=1 SV=1
Length = 546
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 77/331 (23%), Positives = 143/331 (43%), Gaps = 27/331 (8%)
Query: 103 VLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLT 162
LSGRD++ I A G GK+L Y LP + + + PLL+ ++ + A P L
Sbjct: 147 ALSGRDMVGIAATGSGKTLSYCLPGI----VHINAQPLLAPGDGPIVLVLA---PTRELA 199
Query: 163 STTSKEDEKF----------IYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCH-HAG 211
E KF +Y + K + + + I+ R + LE +
Sbjct: 200 VQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDLSRGSEIVIATPGRLIDMLEIGKTNLK 259
Query: 212 RLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLH- 270
R++ + +DEA G F P + I+ PD + +AT ++V+ + L+
Sbjct: 260 RVTYLVLDEADRMLDMG--FEPQIRK--IVDQIRPDRQTLMWSATWPKEVKQLAADYLND 315
Query: 271 -IRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSE-SGIVYCFSRKEC 328
I+ + + N+ +V S K D + KY++ + ++E +++ +++ C
Sbjct: 316 PIQVQVGSLELSASHNITQIVEVVSDFEKR--DRLNKYLETASQDNEYKTLIFASTKRMC 373
Query: 329 EQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVI 388
+ + + LR+ G A H D D R+ V + + ++V T GI+ + +VI
Sbjct: 374 DDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAARGIDVKGINYVI 433
Query: 389 HHSLSKSVETYYQESGRAGRDGLPSECLLFF 419
++ + ++E Y GR GR G + FF
Sbjct: 434 NYDMPGNIEDYVHRIGRTGRAGATGTAISFF 464
>sp|A4QSS5|DBP2_MAGO7 ATP-dependent RNA helicase DBP2 OS=Magnaporthe oryzae (strain 70-15
/ ATCC MYA-4617 / FGSC 8958) GN=DBP2 PE=3 SV=1
Length = 548
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 85/360 (23%), Positives = 142/360 (39%), Gaps = 53/360 (14%)
Query: 88 GIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQ 147
G PA A Q + LSGRDV+ I G GK+L Y LPA+ + + PLL+
Sbjct: 144 GFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAI----VHINAQPLLAPGDGP 199
Query: 148 VMCLAALGIPAHMLTSTTSKEDEKF----------IYKALEKGEGELKMLYVTPEKISKS 197
++ + A P L E KF +Y + KG + I+
Sbjct: 200 IVLILA---PTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATP 256
Query: 198 KRFMSKLEKCH-HAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTAT 256
R + LE + R++ + +DEA G F P + I+ PD + +AT
Sbjct: 257 GRLIDMLESGKTNLRRVTYLVLDEADRMLDMG--FEPQIRK--IIGQIRPDRQTLMWSAT 312
Query: 257 ATQKVQN-----------------DLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKV 299
++V+N DL I + ++ VS + + EK GK
Sbjct: 313 WPKEVRNMAADFLQDFIQVNIGSLDLSANHRITQIVEVVSESEKRDRMIRHMEKVMDGKD 372
Query: 300 VIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHM 359
++I +++ +++ +++ + LRQ G A H D N R+ V
Sbjct: 373 SKNKI--------------LIFVGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLD 418
Query: 360 RWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFF 419
++ K ++V T GI+ ++ V+++ + E Y GR GR G + FF
Sbjct: 419 QFKTGKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFF 478
>sp|Q5QMN3|RH20_ORYSJ DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sativa subsp.
japonica GN=Os01g0197200 PE=3 SV=2
Length = 494
Score = 73.2 bits (178), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 82/339 (24%), Positives = 137/339 (40%), Gaps = 35/339 (10%)
Query: 103 VLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLT 162
L GRD++ I G GK+L Y LPA++ +++P I V+ LA P L
Sbjct: 125 ALRGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILAPGDGPI---VLVLA----PTRELA 177
Query: 163 STTSKEDEKF----------IYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAG- 211
+E KF IY + KG + I+ R + +E HH
Sbjct: 178 VQIQQEATKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMIE-SHHTNL 236
Query: 212 -RLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLH 270
R++ + +DEA G F P K I+ PD + +AT ++V+ L
Sbjct: 237 RRVTYLVLDEADRMLDMG--FEPQIKK--IVSQIRPDRQTLYWSATWPKEVEQLARNFLF 292
Query: 271 IRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKY-----IQESYPNSESGIVYCFSR 325
+ S + N + + + + + E KY + E + +++ ++
Sbjct: 293 DPYKVIIGSEELKAN--HAISQHVEI----LSESQKYNKLVNLLEDIMDGSRILIFMDTK 346
Query: 326 KECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVR 385
K C+Q+ ++LR G A H D R+ V + K ++ T G++ DV+
Sbjct: 347 KGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVK 406
Query: 386 FVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADV 424
+VI++ S+E Y GR GR G FF A+
Sbjct: 407 YVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 445
>sp|Q6C4D4|DBP2_YARLI ATP-dependent RNA helicase DBP2 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=DBP2 PE=3 SV=1
Length = 552
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 79/331 (23%), Positives = 139/331 (41%), Gaps = 27/331 (8%)
Query: 103 VLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLT 162
L+GRDV+ I + G GK+L Y LPA+ + + P+LS ++ + A P L
Sbjct: 150 ALTGRDVIGIASTGSGKTLSYCLPAI----VHINAQPMLSHGDGPIVLVLA---PTRELA 202
Query: 163 STTSKEDEKF----------IYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCH-HAG 211
+E KF +Y + +G+ + I+ R + LE +
Sbjct: 203 VQIQQECSKFGKSSKIRNTCVYGGVPRGQQIRDLARGVEIVIATPGRLLDMLESGKTNLR 262
Query: 212 RLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEML-- 269
R++ + +DEA G F P + I+ PD + +AT ++VQ + L
Sbjct: 263 RVTYLVLDEADRMLDMG--FEPQIRK--IVDQIRPDRQTLMWSATWPKEVQRLAHDYLKD 318
Query: 270 HIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESG-IVYCFSRKEC 328
I+ I + N+ +V + K D + K+++ N ES +++ +++
Sbjct: 319 QIQVNIGSLELSASHNITQVVEVCTEYEKR--DRLVKHLETVMENKESKCLIFTGTKRVA 376
Query: 329 EQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVI 388
+ + + LRQ G A H D R+ V + + K ++V T GI+ + FVI
Sbjct: 377 DDITKFLRQDGWPALAIHGDKQQQERDWVLNEFRQGKSPIMVATDVASRGIDVKGINFVI 436
Query: 389 HHSLSKSVETYYQESGRAGRDGLPSECLLFF 419
++ + E Y GR GR G +F
Sbjct: 437 NYDYPSNSEDYVHRIGRTGRAGTKGTAYTYF 467
>sp|Q2H720|DBP2_CHAGB ATP-dependent RNA helicase DBP2 OS=Chaetomium globosum (strain ATCC
6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970)
GN=DBP2 PE=3 SV=1
Length = 562
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 82/347 (23%), Positives = 143/347 (41%), Gaps = 27/347 (7%)
Query: 88 GIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQ 147
G PA A Q + LSGRDV+ I G GK+L Y LPA+ + + PLL+
Sbjct: 155 GFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAI----VHINAQPLLAPGDGP 210
Query: 148 VMCLAALGIPAHMLTSTTSKEDEKF----------IYKALEKGEGELKMLYVTPEKISKS 197
++ + A P L +E KF +Y + KG + I+
Sbjct: 211 IVLVLA---PTRELAVQIQQEITKFGKSSRIRNTCVYGGVPKGPQTRDLSRGVEVCIATP 267
Query: 198 KRFMSKLEKCH-HAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTAT 256
R + LE + R++ + +DEA G F P + I+ PD +AT
Sbjct: 268 GRLIDMLESGRTNLRRVTYLVLDEADRMLDMG--FEPQIRK--IIGQIRPDRQTCMWSAT 323
Query: 257 ATQKVQ----NDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESY 312
++V+ + L + + + ++ +R V +S +I + K I E
Sbjct: 324 WPKEVRALASDFLTDFIQVNIGSMDLAANHRITQVVEVVNESEKRDKMIKHLEK-IMEDK 382
Query: 313 PNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGT 372
+ +++ +++ +++ + LRQ G A H D N R+ V ++ K ++V T
Sbjct: 383 ESQNKILIFTGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSPIMVAT 442
Query: 373 VAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFF 419
GI+ ++ V+++ + E Y GR GR G + FF
Sbjct: 443 DVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFF 489
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 236,252,973
Number of Sequences: 539616
Number of extensions: 9721380
Number of successful extensions: 41892
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1246
Number of HSP's successfully gapped in prelim test: 263
Number of HSP's that attempted gapping in prelim test: 39434
Number of HSP's gapped (non-prelim): 2402
length of query: 692
length of database: 191,569,459
effective HSP length: 125
effective length of query: 567
effective length of database: 124,117,459
effective search space: 70374599253
effective search space used: 70374599253
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)