Query 035988
Match_columns 692
No_of_seqs 534 out of 4230
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 08:18:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035988.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035988hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03137 ATP-dependent DNA hel 100.0 6E-104 1E-108 904.3 60.3 578 67-656 435-1108(1195)
2 COG0514 RecQ Superfamily II DN 100.0 1E-101 3E-106 842.6 50.6 541 78-650 4-589 (590)
3 PRK11057 ATP-dependent DNA hel 100.0 4.8E-95 1E-99 828.6 58.7 557 72-651 6-605 (607)
4 TIGR01389 recQ ATP-dependent D 100.0 1.7E-90 3.7E-95 793.5 61.1 546 80-648 2-591 (591)
5 KOG0353 ATP-dependent DNA heli 100.0 2.4E-88 5.2E-93 675.7 42.1 548 4-557 7-640 (695)
6 KOG0351 ATP-dependent DNA heli 100.0 2E-78 4.3E-83 696.4 32.2 569 75-653 248-906 (941)
7 TIGR00614 recQ_fam ATP-depende 100.0 1.7E-72 3.7E-77 627.2 48.7 419 82-512 2-449 (470)
8 KOG0352 ATP-dependent DNA heli 100.0 5E-73 1.1E-77 574.0 31.3 424 77-503 5-457 (641)
9 PTZ00110 helicase; Provisional 100.0 2.2E-56 4.8E-61 503.8 37.9 424 14-456 73-522 (545)
10 KOG0331 ATP-dependent RNA heli 100.0 2.3E-56 4.9E-61 479.2 31.4 344 72-434 95-460 (519)
11 KOG0333 U5 snRNP-like RNA heli 100.0 5E-54 1.1E-58 446.4 31.5 355 53-429 231-631 (673)
12 PLN00206 DEAD-box ATP-dependen 100.0 8.1E-53 1.8E-57 473.5 39.5 366 44-431 99-484 (518)
13 KOG0336 ATP-dependent RNA heli 100.0 3.3E-53 7.1E-58 427.7 27.3 395 17-433 159-583 (629)
14 PRK04837 ATP-dependent RNA hel 100.0 2.6E-52 5.6E-57 460.5 34.8 342 67-430 8-370 (423)
15 KOG0330 ATP-dependent RNA heli 100.0 1.3E-52 2.8E-57 422.6 28.2 340 68-431 62-416 (476)
16 COG0513 SrmB Superfamily II DN 100.0 3E-51 6.5E-56 457.9 37.4 343 67-430 29-389 (513)
17 PRK11776 ATP-dependent RNA hel 100.0 3.4E-51 7.4E-56 456.4 36.4 341 68-430 5-357 (460)
18 PRK10590 ATP-dependent RNA hel 100.0 5.2E-51 1.1E-55 453.3 36.8 340 69-429 3-359 (456)
19 PRK04537 ATP-dependent RNA hel 100.0 1E-50 2.3E-55 459.2 38.5 342 68-430 10-372 (572)
20 PRK11192 ATP-dependent RNA hel 100.0 2.9E-50 6.4E-55 446.0 37.4 341 69-429 3-359 (434)
21 PRK01297 ATP-dependent RNA hel 100.0 1.4E-49 3.1E-54 444.6 38.3 339 72-427 91-447 (475)
22 KOG0338 ATP-dependent RNA heli 100.0 5.6E-51 1.2E-55 422.0 23.0 343 72-433 185-544 (691)
23 PRK11634 ATP-dependent RNA hel 100.0 2.2E-49 4.7E-54 450.9 37.9 341 68-430 7-360 (629)
24 KOG0345 ATP-dependent RNA heli 100.0 5.1E-49 1.1E-53 405.1 33.6 345 68-431 5-373 (567)
25 PTZ00424 helicase 45; Provisio 100.0 2E-48 4.3E-53 427.7 36.7 345 66-430 27-382 (401)
26 KOG0342 ATP-dependent RNA heli 100.0 4.9E-49 1.1E-53 408.2 28.2 337 72-431 86-446 (543)
27 KOG0339 ATP-dependent RNA heli 100.0 4E-49 8.7E-54 407.5 27.2 393 20-432 173-585 (731)
28 KOG0343 RNA Helicase [RNA proc 100.0 1.9E-48 4.2E-53 406.4 30.7 336 72-431 73-431 (758)
29 KOG0328 Predicted ATP-dependen 100.0 1.5E-48 3.1E-53 377.6 25.4 346 65-432 25-383 (400)
30 TIGR03817 DECH_helic helicase/ 100.0 6.6E-47 1.4E-51 438.5 36.0 333 74-421 20-385 (742)
31 KOG0334 RNA helicase [RNA proc 100.0 8.5E-48 1.8E-52 431.8 25.5 397 17-431 311-729 (997)
32 KOG0335 ATP-dependent RNA heli 100.0 1.7E-47 3.6E-52 404.0 25.8 358 56-430 63-452 (482)
33 KOG0348 ATP-dependent RNA heli 100.0 8.9E-47 1.9E-51 393.0 28.6 340 72-432 140-564 (708)
34 KOG0340 ATP-dependent RNA heli 100.0 1.4E-46 3E-51 374.9 26.3 347 68-432 8-371 (442)
35 KOG0341 DEAD-box protein abstr 100.0 1.2E-47 2.6E-52 384.9 15.5 347 55-423 158-529 (610)
36 KOG0347 RNA helicase [RNA proc 100.0 1.4E-46 3.1E-51 392.6 23.1 341 61-430 175-578 (731)
37 KOG0326 ATP-dependent RNA heli 100.0 1.3E-46 2.8E-51 369.6 17.2 337 73-432 90-439 (459)
38 KOG0346 RNA helicase [RNA proc 100.0 1.1E-44 2.3E-49 369.9 27.0 333 72-425 23-413 (569)
39 PRK13767 ATP-dependent helicas 100.0 2.4E-43 5.3E-48 416.6 42.5 406 75-534 18-475 (876)
40 TIGR00580 mfd transcription-re 100.0 7.8E-42 1.7E-46 399.6 42.1 321 73-423 434-771 (926)
41 KOG0344 ATP-dependent RNA heli 100.0 2.8E-43 6.1E-48 373.6 22.5 362 55-432 120-505 (593)
42 PRK02362 ski2-like helicase; P 100.0 5.8E-41 1.3E-45 392.8 41.7 324 72-422 5-397 (737)
43 COG1201 Lhr Lhr-like helicases 100.0 4.1E-41 8.9E-46 380.7 36.9 401 74-537 7-444 (814)
44 PRK10689 transcription-repair 100.0 7.2E-40 1.6E-44 390.9 45.7 320 73-422 583-919 (1147)
45 KOG0332 ATP-dependent RNA heli 100.0 2.2E-41 4.7E-46 339.6 26.4 337 64-424 87-445 (477)
46 PRK10917 ATP-dependent DNA hel 100.0 5.9E-40 1.3E-44 379.2 42.3 315 77-420 248-587 (681)
47 PRK14701 reverse gyrase; Provi 100.0 1.3E-40 2.9E-45 405.4 33.5 335 78-434 67-468 (1638)
48 TIGR00643 recG ATP-dependent D 100.0 1.6E-39 3.5E-44 373.3 40.2 318 74-420 219-564 (630)
49 KOG0350 DEAD-box ATP-dependent 100.0 2.5E-41 5.4E-46 350.3 20.3 335 83-434 152-552 (620)
50 KOG4284 DEAD box protein [Tran 100.0 1.2E-40 2.5E-45 353.0 21.0 342 63-423 21-380 (980)
51 PRK00254 ski2-like helicase; P 100.0 1.7E-39 3.7E-44 379.5 32.7 323 72-423 5-389 (720)
52 PRK09751 putative ATP-dependen 100.0 9.3E-39 2E-43 382.7 38.2 374 111-533 1-461 (1490)
53 KOG0337 ATP-dependent RNA heli 100.0 5.4E-40 1.2E-44 334.1 17.7 343 68-430 22-376 (529)
54 PRK01172 ski2-like helicase; P 100.0 2.8E-38 6E-43 367.8 34.1 336 72-431 5-388 (674)
55 KOG0327 Translation initiation 100.0 4.8E-39 1E-43 326.1 22.0 337 72-431 30-379 (397)
56 TIGR02621 cas3_GSU0051 CRISPR- 100.0 8.9E-37 1.9E-41 347.4 30.6 320 79-419 4-388 (844)
57 TIGR01587 cas3_core CRISPR-ass 100.0 6.1E-36 1.3E-40 323.6 27.5 308 108-423 1-337 (358)
58 PRK09401 reverse gyrase; Revie 100.0 4.1E-35 8.8E-40 350.9 33.6 304 79-407 69-429 (1176)
59 TIGR03158 cas3_cyano CRISPR-as 100.0 3.9E-35 8.5E-40 315.0 30.0 302 95-407 1-357 (357)
60 PRK12898 secA preprotein trans 100.0 4.2E-34 9.1E-39 319.1 37.5 328 79-424 92-588 (656)
61 PHA02653 RNA helicase NPH-II; 100.0 1.1E-34 2.4E-39 328.8 29.1 302 94-424 167-516 (675)
62 COG1202 Superfamily II helicas 100.0 9.2E-35 2E-39 305.5 25.6 333 72-423 198-554 (830)
63 TIGR01970 DEAH_box_HrpB ATP-de 100.0 6E-34 1.3E-38 330.3 30.5 303 96-427 7-341 (819)
64 PHA02558 uvsW UvsW helicase; P 100.0 4.6E-34 1E-38 320.3 28.3 298 90-420 113-450 (501)
65 COG1111 MPH1 ERCC4-like helica 100.0 2.8E-33 6.1E-38 293.4 31.4 317 89-424 13-483 (542)
66 PRK11664 ATP-dependent RNA hel 100.0 5.1E-34 1.1E-38 331.6 28.0 303 97-426 11-343 (812)
67 PRK09200 preprotein translocas 100.0 9.2E-33 2E-37 314.7 37.3 328 79-424 67-543 (790)
68 COG1205 Distinct helicase fami 100.0 1.6E-33 3.5E-38 327.9 30.2 332 80-420 60-420 (851)
69 TIGR03714 secA2 accessory Sec 100.0 2.2E-32 4.7E-37 308.7 38.1 331 80-424 60-539 (762)
70 COG1204 Superfamily II helicas 100.0 4.4E-33 9.6E-38 319.9 27.3 325 75-419 16-405 (766)
71 TIGR00963 secA preprotein tran 100.0 1.6E-32 3.6E-37 307.7 29.6 327 79-424 45-519 (745)
72 PRK13766 Hef nuclease; Provisi 100.0 6.1E-32 1.3E-36 320.2 35.3 318 90-426 14-483 (773)
73 PRK05580 primosome assembly pr 100.0 1.9E-31 4.1E-36 307.3 34.6 325 91-432 144-559 (679)
74 KOG0329 ATP-dependent RNA heli 100.0 8.8E-34 1.9E-38 271.3 12.3 311 58-424 33-357 (387)
75 COG1197 Mfd Transcription-repa 100.0 1.1E-30 2.5E-35 299.5 38.3 374 25-449 542-932 (1139)
76 TIGR01054 rgy reverse gyrase. 100.0 2.7E-31 5.8E-36 318.6 33.2 291 78-394 66-409 (1171)
77 COG1200 RecG RecG-like helicas 100.0 2.7E-30 6E-35 282.0 37.1 323 72-423 244-592 (677)
78 TIGR00595 priA primosomal prot 100.0 4.6E-31 1E-35 293.8 27.9 304 110-430 1-389 (505)
79 KOG0354 DEAD-box like helicase 100.0 6.1E-31 1.3E-35 291.2 25.8 318 89-423 60-530 (746)
80 PRK11131 ATP-dependent RNA hel 100.0 1.3E-30 2.8E-35 307.7 28.3 301 96-426 79-415 (1294)
81 TIGR00603 rad25 DNA repair hel 100.0 4.5E-30 9.8E-35 290.0 31.0 305 91-424 255-609 (732)
82 KOG0952 DNA/RNA helicase MER3/ 100.0 8.2E-30 1.8E-34 284.5 27.6 334 84-434 103-503 (1230)
83 PRK04914 ATP-dependent helicas 100.0 2.4E-28 5.1E-33 285.2 33.5 318 91-421 152-602 (956)
84 TIGR01967 DEAH_box_HrpA ATP-de 100.0 2E-28 4.4E-33 290.3 27.6 303 97-426 73-408 (1283)
85 COG1061 SSL2 DNA or RNA helica 100.0 4.6E-28 1E-32 266.7 28.4 288 91-408 36-375 (442)
86 PRK12906 secA preprotein trans 100.0 4.5E-27 9.7E-32 266.3 32.9 327 79-423 69-554 (796)
87 PRK09694 helicase Cas3; Provis 100.0 1.1E-26 2.5E-31 269.6 33.4 313 87-411 282-664 (878)
88 PRK13104 secA preprotein trans 100.0 2.7E-26 5.9E-31 261.1 34.5 327 80-424 72-589 (896)
89 PRK12904 preprotein translocas 99.9 2.7E-25 5.8E-30 252.9 35.4 328 79-424 70-575 (830)
90 KOG0349 Putative DEAD-box RNA 99.9 2.6E-27 5.6E-32 241.6 16.4 273 133-421 288-614 (725)
91 COG4098 comFA Superfamily II D 99.9 7.2E-25 1.6E-29 219.0 30.4 296 91-420 97-414 (441)
92 KOG0947 Cytoplasmic exosomal R 99.9 2.4E-25 5.1E-30 246.2 27.3 317 86-432 293-735 (1248)
93 PRK12899 secA preprotein trans 99.9 2.1E-24 4.6E-29 245.0 35.8 125 298-424 551-683 (970)
94 KOG0951 RNA helicase BRR2, DEA 99.9 1.7E-25 3.6E-30 252.7 25.9 333 86-433 304-713 (1674)
95 PRK11448 hsdR type I restricti 99.9 1.6E-25 3.4E-30 267.3 26.4 305 91-411 413-802 (1123)
96 COG4581 Superfamily II RNA hel 99.9 7.5E-25 1.6E-29 251.9 24.9 309 86-422 115-537 (1041)
97 PRK13107 preprotein translocas 99.9 5.5E-24 1.2E-28 241.5 30.8 327 79-424 71-593 (908)
98 KOG0948 Nuclear exosomal RNA h 99.9 1.3E-24 2.8E-29 235.0 17.4 320 86-433 125-551 (1041)
99 KOG0950 DNA polymerase theta/e 99.9 4E-24 8.6E-29 238.6 21.2 337 77-434 209-623 (1008)
100 COG1198 PriA Primosomal protei 99.9 2.1E-22 4.5E-27 227.6 30.9 350 91-465 198-637 (730)
101 PLN03142 Probable chromatin-re 99.9 3.2E-22 7E-27 234.7 30.8 315 91-423 169-600 (1033)
102 cd00268 DEADc DEAD-box helicas 99.9 5.6E-23 1.2E-27 204.1 20.6 183 72-270 3-197 (203)
103 PRK12900 secA preprotein trans 99.9 7.8E-22 1.7E-26 224.8 29.2 125 298-424 581-713 (1025)
104 KOG0922 DEAH-box RNA helicase 99.9 2.3E-22 5E-27 218.0 23.3 299 95-426 55-394 (674)
105 COG1643 HrpA HrpA-like helicas 99.9 2.6E-22 5.6E-27 230.0 23.7 303 94-425 53-390 (845)
106 TIGR00631 uvrb excinuclease AB 99.9 7.5E-21 1.6E-25 217.0 34.0 124 301-425 428-556 (655)
107 COG1203 CRISPR-associated heli 99.9 2.5E-22 5.5E-27 233.9 22.3 323 91-422 195-550 (733)
108 PRK12326 preprotein translocas 99.9 2.2E-20 4.8E-25 207.7 33.8 327 79-423 67-548 (764)
109 PF00270 DEAD: DEAD/DEAH box h 99.9 2E-21 4.3E-26 186.8 16.7 157 93-261 1-166 (169)
110 PRK13103 secA preprotein trans 99.9 7.9E-20 1.7E-24 208.0 31.2 327 80-424 72-593 (913)
111 KOG0923 mRNA splicing factor A 99.9 8.9E-21 1.9E-25 203.3 19.8 306 91-423 265-607 (902)
112 PRK05298 excinuclease ABC subu 99.9 2.1E-19 4.6E-24 206.7 32.7 123 301-424 432-559 (652)
113 TIGR00348 hsdR type I site-spe 99.9 1.6E-19 3.5E-24 208.4 28.6 300 91-409 238-634 (667)
114 TIGR01407 dinG_rel DnaQ family 99.9 2.4E-19 5.1E-24 213.3 30.6 334 78-421 234-813 (850)
115 COG1110 Reverse gyrase [DNA re 99.8 3E-19 6.4E-24 200.7 28.2 290 79-394 71-417 (1187)
116 PRK12903 secA preprotein trans 99.8 1.2E-18 2.7E-23 196.2 33.1 326 79-423 67-540 (925)
117 KOG0920 ATP-dependent RNA heli 99.8 1E-19 2.2E-24 207.8 23.8 479 92-628 174-735 (924)
118 KOG0924 mRNA splicing factor A 99.8 6.1E-20 1.3E-24 197.1 20.3 297 93-422 358-697 (1042)
119 COG0556 UvrB Helicase subunit 99.8 3.8E-17 8.3E-22 172.6 32.3 164 248-420 387-555 (663)
120 COG4096 HsdR Type I site-speci 99.8 6.7E-19 1.5E-23 195.4 18.9 295 89-409 163-525 (875)
121 KOG4150 Predicted ATP-dependen 99.8 2.9E-19 6.2E-24 188.3 14.7 324 88-420 283-638 (1034)
122 KOG0385 Chromatin remodeling c 99.8 4.6E-18 9.9E-23 185.6 24.3 312 91-423 167-600 (971)
123 PRK07246 bifunctional ATP-depe 99.8 1.4E-17 3.1E-22 195.5 30.2 324 88-421 243-782 (820)
124 CHL00122 secA preprotein trans 99.8 6.2E-17 1.4E-21 183.8 32.2 286 79-382 65-491 (870)
125 KOG0926 DEAH-box RNA helicase 99.8 1.3E-18 2.8E-23 190.0 17.1 300 98-422 263-704 (1172)
126 KOG0953 Mitochondrial RNA heli 99.8 3.4E-17 7.4E-22 173.4 22.0 280 107-434 192-488 (700)
127 PRK12902 secA preprotein trans 99.8 4.7E-16 1E-20 176.3 31.7 285 80-382 75-506 (939)
128 KOG0949 Predicted helicase, DE 99.7 1.6E-17 3.4E-22 185.0 16.3 153 91-259 511-673 (1330)
129 cd00079 HELICc Helicase superf 99.7 3.9E-17 8.5E-22 149.6 14.3 120 299-418 12-131 (131)
130 PRK12901 secA preprotein trans 99.7 2.4E-15 5.2E-20 172.1 29.5 124 298-423 611-742 (1112)
131 PRK08074 bifunctional ATP-depe 99.7 3.5E-15 7.7E-20 178.5 32.5 173 249-421 674-892 (928)
132 KOG0384 Chromodomain-helicase 99.7 7.9E-17 1.7E-21 183.8 15.7 321 90-424 369-813 (1373)
133 KOG0925 mRNA splicing factor A 99.7 1E-15 2.3E-20 159.6 21.5 323 66-422 24-387 (699)
134 PF00271 Helicase_C: Helicase 99.7 5.8E-17 1.2E-21 134.8 9.4 78 333-410 1-78 (78)
135 TIGR03117 cas_csf4 CRISPR-asso 99.7 1.4E-14 3E-19 163.4 29.1 159 249-412 373-604 (636)
136 KOG0387 Transcription-coupled 99.7 1.3E-15 2.9E-20 167.4 20.2 319 91-424 205-660 (923)
137 KOG1123 RNA polymerase II tran 99.7 8.7E-16 1.9E-20 160.5 17.5 289 88-410 299-635 (776)
138 smart00487 DEXDc DEAD-like hel 99.7 3.9E-15 8.5E-20 145.7 17.5 170 87-270 4-183 (201)
139 COG4889 Predicted helicase [Ge 99.6 8.5E-16 1.8E-20 169.2 13.4 326 88-419 158-585 (1518)
140 PRK14873 primosome assembly pr 99.6 2.6E-14 5.6E-19 163.2 26.1 294 113-433 167-549 (665)
141 PRK11747 dinG ATP-dependent DN 99.6 1.9E-13 4.2E-18 158.8 31.1 167 250-420 459-672 (697)
142 KOG0389 SNF2 family DNA-depend 99.6 1.2E-13 2.7E-18 151.9 21.6 321 91-425 399-891 (941)
143 PF04851 ResIII: Type III rest 99.6 1.3E-14 2.8E-19 141.0 12.7 154 91-258 3-183 (184)
144 COG1199 DinG Rad3-related DNA 99.6 2.4E-13 5.3E-18 158.7 23.3 167 249-418 405-614 (654)
145 TIGR00604 rad3 DNA repair heli 99.6 1.1E-12 2.4E-17 153.5 28.7 168 250-420 444-672 (705)
146 KOG0390 DNA repair protein, SN 99.6 1.7E-12 3.8E-17 146.7 28.4 309 91-418 238-701 (776)
147 KOG0951 RNA helicase BRR2, DEA 99.6 1.2E-13 2.7E-18 157.7 18.9 314 91-433 1143-1505(1674)
148 smart00490 HELICc helicase sup 99.5 2.9E-14 6.3E-19 119.1 9.0 81 330-410 2-82 (82)
149 KOG1000 Chromatin remodeling p 99.5 2.1E-12 4.6E-17 135.5 20.2 307 91-419 198-598 (689)
150 PF00570 HRDC: HRDC domain Blo 99.5 3E-14 6.5E-19 115.0 5.1 65 575-645 2-68 (68)
151 cd00046 DEXDc DEAD-like helica 99.5 6.9E-13 1.5E-17 122.0 13.1 136 107-257 1-144 (144)
152 COG0653 SecA Preprotein transl 99.4 9.8E-12 2.1E-16 141.2 21.5 330 81-424 71-547 (822)
153 KOG0392 SNF2 family DNA-depend 99.4 1.6E-11 3.4E-16 140.7 21.0 110 314-423 1339-1455(1549)
154 TIGR02562 cas3_yersinia CRISPR 99.4 2.8E-11 6E-16 139.9 22.6 309 94-412 411-882 (1110)
155 smart00341 HRDC Helicase and R 99.4 1.6E-12 3.4E-17 108.9 8.6 74 574-653 4-79 (81)
156 KOG0386 Chromatin remodeling c 99.4 8.6E-12 1.9E-16 140.7 16.9 313 91-423 394-837 (1157)
157 PF02399 Herpes_ori_bp: Origin 99.3 1.8E-10 4E-15 130.2 20.5 284 108-421 51-387 (824)
158 KOG4439 RNA polymerase II tran 99.2 9.9E-10 2.1E-14 120.1 17.5 105 314-418 745-852 (901)
159 KOG1002 Nucleotide excision re 99.1 5.7E-10 1.2E-14 117.3 13.6 110 314-423 637-750 (791)
160 COG0610 Type I site-specific r 99.1 9.5E-09 2.1E-13 123.0 24.3 285 107-409 274-636 (962)
161 KOG0388 SNF2 family DNA-depend 99.1 9.8E-09 2.1E-13 112.2 20.1 119 301-422 1033-1154(1185)
162 PF07517 SecA_DEAD: SecA DEAD- 99.0 1.8E-08 3.9E-13 102.6 18.9 135 79-225 66-210 (266)
163 PF06862 DUF1253: Protein of u 99.0 9.5E-08 2.1E-12 103.4 25.2 249 182-434 130-427 (442)
164 COG0553 HepA Superfamily II DN 99.0 3.7E-08 7.9E-13 119.3 24.7 119 300-418 693-816 (866)
165 PF07652 Flavi_DEAD: Flaviviru 99.0 1.1E-09 2.3E-14 99.5 6.2 132 106-261 4-140 (148)
166 PF00176 SNF2_N: SNF2 family N 98.9 6.1E-09 1.3E-13 109.5 11.6 158 95-270 1-185 (299)
167 KOG1015 Transcription regulato 98.7 3.5E-07 7.6E-12 103.1 18.1 115 304-418 1131-1271(1567)
168 KOG0952 DNA/RNA helicase MER3/ 98.6 4.3E-09 9.3E-14 119.9 -0.7 259 91-367 927-1207(1230)
169 PRK10829 ribonuclease D; Provi 98.6 1.1E-07 2.4E-12 101.9 10.0 71 574-650 213-284 (373)
170 PF09382 RQC: RQC domain; Int 98.6 9.7E-08 2.1E-12 84.2 7.3 76 477-555 1-105 (106)
171 KOG2340 Uncharacterized conser 98.5 2.9E-06 6.2E-11 90.9 16.7 341 90-435 215-681 (698)
172 smart00489 DEXDc3 DEAD-like he 98.5 7.9E-07 1.7E-11 92.9 11.9 90 87-178 5-107 (289)
173 smart00488 DEXDc2 DEAD-like he 98.5 7.9E-07 1.7E-11 92.9 11.9 90 87-178 5-107 (289)
174 KOG0921 Dosage compensation co 98.3 4.5E-06 9.8E-11 94.1 13.1 295 97-421 384-773 (1282)
175 TIGR01388 rnd ribonuclease D. 98.3 2.2E-06 4.7E-11 92.5 8.4 71 574-650 209-280 (367)
176 PRK15483 type III restriction- 98.2 1.4E-05 2.9E-10 93.9 14.6 45 365-409 501-545 (986)
177 TIGR00596 rad1 DNA repair prot 98.1 6.2E-05 1.3E-09 88.3 17.5 68 183-259 7-74 (814)
178 PF13086 AAA_11: AAA domain; P 98.1 1.1E-05 2.4E-10 81.3 9.8 62 92-153 2-75 (236)
179 KOG0391 SNF2 family DNA-depend 98.0 3.5E-05 7.6E-10 89.1 12.0 123 301-423 1262-1388(1958)
180 PF13307 Helicase_C_2: Helicas 98.0 1.3E-05 2.8E-10 76.8 6.7 104 314-419 8-147 (167)
181 KOG0391 SNF2 family DNA-depend 97.9 5E-05 1.1E-09 87.9 9.3 165 91-273 615-791 (1958)
182 KOG1802 RNA helicase nonsense 97.8 0.00015 3.3E-09 79.9 12.0 78 86-164 405-487 (935)
183 PF13872 AAA_34: P-loop contai 97.8 0.00012 2.7E-09 75.1 10.5 163 91-261 37-224 (303)
184 COG3587 Restriction endonuclea 97.7 0.00052 1.1E-08 78.1 14.0 46 364-409 482-527 (985)
185 COG0349 Rnd Ribonuclease D [Tr 97.7 0.0003 6.4E-09 73.9 10.7 98 574-677 209-308 (361)
186 KOG1016 Predicted DNA helicase 97.6 0.017 3.8E-07 65.1 23.6 151 314-464 718-892 (1387)
187 TIGR00376 DNA helicase, putati 97.6 0.00093 2E-08 77.4 14.1 75 90-164 156-234 (637)
188 KOG1803 DNA helicase [Replicat 97.4 0.00081 1.7E-08 74.1 10.0 63 90-152 184-250 (649)
189 PF13604 AAA_30: AAA domain; P 97.3 0.0012 2.7E-08 64.9 10.1 60 91-150 1-65 (196)
190 PF13245 AAA_19: Part of AAA d 97.3 0.0007 1.5E-08 55.6 6.6 53 99-151 2-62 (76)
191 KOG1132 Helicase of the DEAD s 97.3 0.0008 1.7E-08 77.0 9.1 69 86-155 17-134 (945)
192 PF02562 PhoH: PhoH-like prote 97.3 0.00086 1.9E-08 65.9 8.2 53 91-143 4-61 (205)
193 KOG1131 RNA polymerase II tran 97.2 0.002 4.3E-08 69.6 10.8 68 86-153 11-89 (755)
194 PF12340 DUF3638: Protein of u 97.2 0.0062 1.3E-07 60.5 13.3 132 91-226 23-186 (229)
195 KOG1805 DNA replication helica 97.1 0.0027 5.8E-08 73.5 11.1 141 72-226 655-810 (1100)
196 PF09848 DUF2075: Uncharacteri 97.0 0.0019 4.1E-08 69.8 8.7 47 108-154 3-54 (352)
197 smart00492 HELICc3 helicase su 97.0 0.0047 1E-07 57.3 9.6 52 343-394 25-79 (141)
198 PRK08181 transposase; Validate 96.9 0.041 8.9E-07 56.8 16.6 55 93-147 89-149 (269)
199 smart00491 HELICc2 helicase su 96.9 0.0046 9.9E-08 57.4 8.7 68 352-419 31-136 (142)
200 PRK10536 hypothetical protein; 96.8 0.022 4.7E-07 57.8 13.2 57 87-143 55-116 (262)
201 PRK10875 recD exonuclease V su 96.8 0.016 3.5E-07 66.6 13.9 76 78-153 138-221 (615)
202 TIGR01448 recD_rel helicase, p 96.7 0.015 3.2E-07 68.6 13.0 61 85-146 318-383 (720)
203 PRK05703 flhF flagellar biosyn 96.7 0.28 6.1E-06 54.2 22.2 56 211-270 298-355 (424)
204 PRK11773 uvrD DNA-dependent he 96.7 0.11 2.3E-06 61.9 20.1 62 91-154 9-77 (721)
205 PRK12726 flagellar biosynthesi 96.6 0.28 6.1E-06 52.7 20.3 20 105-124 205-224 (407)
206 PRK06526 transposase; Provisio 96.5 0.021 4.6E-07 58.5 11.4 23 102-124 94-116 (254)
207 PRK12723 flagellar biosynthesi 96.5 0.058 1.3E-06 58.6 15.2 124 106-269 174-309 (388)
208 PF13401 AAA_22: AAA domain; P 96.5 0.021 4.6E-07 51.7 10.2 19 106-124 4-22 (131)
209 PRK06835 DNA replication prote 96.4 0.91 2E-05 48.4 23.2 42 106-147 183-226 (329)
210 TIGR01073 pcrA ATP-dependent D 96.4 0.27 5.9E-06 58.5 21.3 63 90-154 3-72 (726)
211 PRK14722 flhF flagellar biosyn 96.4 0.19 4.2E-06 54.2 17.8 54 211-269 214-269 (374)
212 TIGR01447 recD exodeoxyribonuc 96.4 0.034 7.4E-07 63.8 12.7 61 93-153 147-215 (586)
213 PF11408 Helicase_Sgs1: Sgs1 R 96.3 0.0068 1.5E-07 49.5 4.9 56 576-637 7-64 (80)
214 cd00009 AAA The AAA+ (ATPases 96.3 0.028 6E-07 51.3 9.8 18 106-123 19-36 (151)
215 PRK11889 flhF flagellar biosyn 96.2 0.14 2.9E-06 55.3 15.3 55 212-270 320-375 (436)
216 COG1419 FlhF Flagellar GTP-bin 96.2 0.28 6.2E-06 52.7 17.4 124 106-271 203-337 (407)
217 PF00448 SRP54: SRP54-type pro 96.1 0.11 2.5E-06 51.0 13.5 54 211-268 82-136 (196)
218 PF05970 PIF1: PIF1-like helic 96.1 0.0094 2E-07 64.6 6.3 54 92-145 2-64 (364)
219 PF00580 UvrD-helicase: UvrD/R 96.0 0.012 2.7E-07 61.9 6.7 61 92-154 1-68 (315)
220 PRK08727 hypothetical protein; 95.9 0.065 1.4E-06 54.3 10.7 16 107-122 42-57 (233)
221 PF13871 Helicase_C_4: Helicas 95.8 0.023 5E-07 58.4 7.2 58 356-413 52-117 (278)
222 smart00382 AAA ATPases associa 95.8 0.043 9.3E-07 49.5 8.5 38 106-143 2-42 (148)
223 PRK07952 DNA replication prote 95.8 0.18 3.9E-06 51.2 13.7 47 211-260 161-208 (244)
224 PRK14974 cell division protein 95.8 0.22 4.7E-06 53.1 14.8 128 107-268 141-275 (336)
225 PRK12727 flagellar biosynthesi 95.7 3.2 6.9E-05 46.8 23.9 54 211-268 427-480 (559)
226 PRK08116 hypothetical protein; 95.7 0.22 4.7E-06 51.6 13.8 40 107-146 115-156 (268)
227 PRK12377 putative replication 95.6 0.13 2.8E-06 52.4 11.7 43 106-148 101-145 (248)
228 KOG0383 Predicted helicase [Ge 95.6 0.0059 1.3E-07 69.8 2.1 74 304-378 620-696 (696)
229 COG2256 MGS1 ATPase related to 95.5 0.057 1.2E-06 57.5 8.7 40 211-259 103-142 (436)
230 KOG1001 Helicase-like transcri 95.5 0.083 1.8E-06 61.2 10.9 137 107-270 153-305 (674)
231 cd01124 KaiC KaiC is a circadi 95.4 0.071 1.5E-06 51.6 8.7 48 109-157 2-52 (187)
232 PRK06921 hypothetical protein; 95.2 0.35 7.6E-06 50.0 13.6 17 106-122 117-133 (266)
233 COG1110 Reverse gyrase [DNA re 95.2 0.084 1.8E-06 62.0 9.5 77 297-375 109-191 (1187)
234 PRK05707 DNA polymerase III su 95.2 0.1 2.3E-06 55.5 9.7 34 91-124 3-40 (328)
235 cd01122 GP4d_helicase GP4d_hel 95.1 0.25 5.5E-06 51.1 12.3 118 104-226 28-154 (271)
236 PRK12724 flagellar biosynthesi 95.1 2.1 4.6E-05 46.8 19.3 55 211-269 298-356 (432)
237 PRK08769 DNA polymerase III su 95.0 0.18 4E-06 53.3 11.0 36 89-124 2-44 (319)
238 PRK05580 primosome assembly pr 95.0 0.12 2.5E-06 60.9 10.3 77 314-391 189-266 (679)
239 cd01126 TraG_VirD4 The TraG/Tr 95.0 0.02 4.4E-07 62.6 3.7 57 108-164 1-58 (384)
240 TIGR02768 TraA_Ti Ti-type conj 94.9 0.1 2.2E-06 61.9 9.8 56 91-146 352-411 (744)
241 TIGR00595 priA primosomal prot 94.9 0.12 2.6E-06 58.5 9.8 77 314-391 24-101 (505)
242 cd01120 RecA-like_NTPases RecA 94.9 0.34 7.3E-06 45.2 11.6 35 109-143 2-39 (165)
243 COG1875 NYN ribonuclease and A 94.9 0.16 3.4E-06 53.5 9.7 61 85-145 222-290 (436)
244 PTZ00112 origin recognition co 94.7 0.28 6.1E-06 57.6 12.0 58 479-537 1019-1083(1164)
245 PF00308 Bac_DnaA: Bacterial d 94.7 0.2 4.3E-06 50.2 9.8 16 211-226 96-111 (219)
246 PF02534 T4SS-DNA_transf: Type 94.7 0.031 6.7E-07 62.9 4.4 58 107-164 45-103 (469)
247 PF05621 TniB: Bacterial TniB 94.6 0.23 5E-06 51.5 10.1 43 211-256 144-188 (302)
248 PRK04296 thymidine kinase; Pro 94.6 0.15 3.2E-06 49.9 8.4 33 107-139 3-38 (190)
249 PRK06893 DNA replication initi 94.5 0.15 3.3E-06 51.4 8.7 48 211-261 90-138 (229)
250 PRK10917 ATP-dependent DNA hel 94.5 0.19 4E-06 59.3 10.6 78 314-391 309-391 (681)
251 PRK00411 cdc6 cell division co 94.5 0.57 1.2E-05 51.3 13.8 61 478-538 294-356 (394)
252 TIGR01075 uvrD DNA helicase II 94.5 0.088 1.9E-06 62.5 7.8 63 90-154 3-72 (715)
253 PRK09183 transposase/IS protei 94.5 0.78 1.7E-05 47.2 13.7 22 103-124 99-120 (259)
254 KOG0298 DEAD box-containing he 94.4 0.064 1.4E-06 64.2 6.2 145 106-265 374-557 (1394)
255 TIGR02760 TraI_TIGR conjugativ 94.4 1.2 2.6E-05 58.3 18.1 207 91-337 429-648 (1960)
256 PF13173 AAA_14: AAA domain 94.3 0.25 5.5E-06 44.8 8.9 42 212-261 61-102 (128)
257 TIGR03015 pepcterm_ATPase puta 94.3 0.51 1.1E-05 48.6 12.3 33 93-125 25-62 (269)
258 PRK14873 primosome assembly pr 94.3 0.16 3.4E-06 59.2 9.1 87 301-388 174-262 (665)
259 PRK14964 DNA polymerase III su 94.3 0.34 7.5E-06 54.2 11.3 21 107-127 36-56 (491)
260 TIGR02928 orc1/cdc6 family rep 94.3 0.32 6.9E-06 52.7 11.0 60 479-538 287-348 (365)
261 PF00004 AAA: ATPase family as 94.3 0.16 3.5E-06 45.7 7.4 17 109-125 1-17 (132)
262 PRK13897 type IV secretion sys 94.3 0.046 9.9E-07 62.7 4.5 58 107-164 159-217 (606)
263 TIGR01425 SRP54_euk signal rec 94.2 0.59 1.3E-05 51.4 12.7 53 108-160 102-160 (429)
264 KOG1133 Helicase of the DEAD s 94.0 2.2 4.8E-05 48.6 16.7 119 299-420 612-778 (821)
265 cd00984 DnaB_C DnaB helicase C 94.0 0.57 1.2E-05 47.4 11.6 117 105-225 12-136 (242)
266 TIGR03499 FlhF flagellar biosy 94.0 2.9 6.3E-05 43.6 17.0 19 106-124 194-212 (282)
267 PRK08084 DNA replication initi 94.0 0.47 1E-05 48.1 10.8 17 107-123 46-62 (235)
268 PRK14956 DNA polymerase III su 93.9 0.55 1.2E-05 52.2 12.0 17 109-125 43-59 (484)
269 COG1474 CDC6 Cdc6-related prot 93.9 0.93 2E-05 49.0 13.6 55 478-537 277-331 (366)
270 PRK14949 DNA polymerase III su 93.9 0.16 3.4E-06 60.1 8.1 17 109-125 41-57 (944)
271 PRK14723 flhF flagellar biosyn 93.8 3 6.4E-05 49.2 18.1 19 106-124 185-203 (767)
272 PRK13826 Dtr system oriT relax 93.8 1.4 3E-05 54.1 15.8 56 91-146 381-440 (1102)
273 PRK12422 chromosomal replicati 93.7 0.46 1E-05 52.9 11.1 17 107-123 142-158 (445)
274 TIGR00064 ftsY signal recognit 93.6 0.98 2.1E-05 46.8 12.6 51 107-157 73-129 (272)
275 PRK13889 conjugal transfer rel 93.6 0.22 4.7E-06 60.3 8.7 56 91-146 346-405 (988)
276 PRK12323 DNA polymerase III su 93.6 0.73 1.6E-05 52.9 12.3 18 108-125 40-57 (700)
277 KOG2206 Exosome 3'-5' exoribon 93.6 0.21 4.6E-06 55.2 7.7 70 574-649 406-477 (687)
278 COG1198 PriA Primosomal protei 93.5 0.17 3.6E-06 59.0 7.3 73 302-374 232-305 (730)
279 PRK06871 DNA polymerase III su 93.5 0.53 1.1E-05 50.0 10.6 74 183-262 73-151 (325)
280 PRK14960 DNA polymerase III su 93.5 0.64 1.4E-05 53.5 11.7 18 108-125 39-56 (702)
281 TIGR02881 spore_V_K stage V sp 93.5 0.58 1.3E-05 48.2 10.7 19 107-125 43-61 (261)
282 PRK13850 type IV secretion sys 93.4 0.086 1.9E-06 61.3 4.7 57 107-163 140-197 (670)
283 PRK08903 DnaA regulatory inact 93.3 0.48 1E-05 47.6 9.6 17 106-122 42-58 (227)
284 KOG0989 Replication factor C, 93.3 0.39 8.4E-06 49.5 8.6 33 95-127 40-78 (346)
285 PRK06731 flhF flagellar biosyn 93.3 2.9 6.4E-05 43.2 15.3 128 105-269 74-208 (270)
286 PRK09111 DNA polymerase III su 93.3 0.88 1.9E-05 52.5 12.6 18 108-125 48-65 (598)
287 PRK05986 cob(I)alamin adenolsy 93.2 1.8 4E-05 42.0 12.9 135 104-259 20-159 (191)
288 COG2805 PilT Tfp pilus assembl 93.2 0.54 1.2E-05 48.4 9.5 21 109-129 128-150 (353)
289 PRK05642 DNA replication initi 93.2 0.51 1.1E-05 47.8 9.6 16 107-122 46-61 (234)
290 PRK14958 DNA polymerase III su 93.2 0.71 1.5E-05 52.3 11.6 17 109-125 41-57 (509)
291 PRK06964 DNA polymerase III su 93.1 0.56 1.2E-05 50.1 10.1 33 92-124 2-39 (342)
292 PRK06645 DNA polymerase III su 93.1 0.99 2.1E-05 51.0 12.5 19 108-126 45-63 (507)
293 TIGR00643 recG ATP-dependent D 93.1 0.37 8E-06 56.3 9.5 78 314-391 283-365 (630)
294 PRK14961 DNA polymerase III su 93.1 0.49 1.1E-05 51.3 9.8 17 109-125 41-57 (363)
295 PRK00149 dnaA chromosomal repl 93.0 0.91 2E-05 50.8 12.1 17 107-123 149-165 (450)
296 PRK14721 flhF flagellar biosyn 93.0 1.4 3E-05 48.4 13.0 56 211-270 268-324 (420)
297 PRK13822 conjugal transfer cou 93.0 0.12 2.7E-06 59.8 5.2 58 107-164 225-283 (641)
298 PRK10867 signal recognition pa 92.9 1.3 2.9E-05 48.9 12.8 53 108-160 102-161 (433)
299 PRK13342 recombination factor 92.9 0.44 9.5E-06 52.7 9.3 18 108-125 38-55 (413)
300 PRK07994 DNA polymerase III su 92.9 1.2 2.6E-05 51.6 13.0 44 210-259 117-160 (647)
301 PRK07003 DNA polymerase III su 92.9 0.63 1.4E-05 54.2 10.5 17 109-125 41-57 (830)
302 PF06745 KaiC: KaiC; InterPro 92.8 0.94 2E-05 45.4 10.8 101 106-224 19-127 (226)
303 PRK05973 replicative DNA helic 92.8 2.1 4.6E-05 43.3 13.1 65 91-157 50-117 (237)
304 PRK04195 replication factor C 92.8 0.93 2E-05 51.2 11.8 20 106-125 39-58 (482)
305 PF13177 DNA_pol3_delta2: DNA 92.7 1 2.2E-05 42.7 10.2 49 211-265 101-149 (162)
306 PRK09112 DNA polymerase III su 92.6 1.8 3.9E-05 46.6 13.2 44 209-258 138-181 (351)
307 cd01121 Sms Sms (bacterial rad 92.6 1.1 2.3E-05 48.7 11.5 50 106-156 82-134 (372)
308 PRK14955 DNA polymerase III su 92.6 1.6 3.5E-05 47.9 13.1 17 109-125 41-57 (397)
309 PRK06067 flagellar accessory p 92.6 5.6 0.00012 40.1 16.2 51 106-157 25-78 (234)
310 PF05127 Helicase_RecD: Helica 92.6 0.18 3.9E-06 48.4 4.9 116 110-258 1-124 (177)
311 PRK14952 DNA polymerase III su 92.6 1.3 2.9E-05 50.8 12.7 44 210-259 116-159 (584)
312 PF10593 Z1: Z1 domain; Inter 92.6 0.38 8.2E-06 48.8 7.5 91 339-434 110-205 (239)
313 COG3421 Uncharacterized protei 92.5 0.24 5.2E-06 55.1 6.3 134 111-259 2-167 (812)
314 PHA02533 17 large terminase pr 92.5 2.7 5.8E-05 47.9 15.0 63 91-153 59-126 (534)
315 PRK10689 transcription-repair 92.5 1.4 3.1E-05 54.7 13.7 83 128-223 806-890 (1147)
316 PRK06090 DNA polymerase III su 92.5 1.1 2.3E-05 47.5 11.0 77 183-265 73-155 (319)
317 KOG0739 AAA+-type ATPase [Post 92.5 1.4 3E-05 45.3 11.0 117 101-264 156-284 (439)
318 TIGR02767 TraG-Ti Ti-type conj 92.4 0.17 3.8E-06 58.3 5.4 58 107-164 212-271 (623)
319 COG1219 ClpX ATP-dependent pro 92.4 0.12 2.5E-06 53.4 3.5 21 105-125 96-116 (408)
320 PLN03025 replication factor C 92.4 1.9 4.1E-05 45.9 12.9 44 212-261 99-142 (319)
321 PRK05563 DNA polymerase III su 92.4 0.3 6.5E-06 56.0 7.2 18 108-125 40-57 (559)
322 TIGR03877 thermo_KaiC_1 KaiC d 92.3 0.52 1.1E-05 47.8 8.3 51 106-157 21-74 (237)
323 PRK14962 DNA polymerase III su 92.3 1.6 3.4E-05 49.0 12.7 17 109-125 39-55 (472)
324 KOG1133 Helicase of the DEAD s 92.3 0.15 3.3E-06 57.5 4.5 41 87-128 12-56 (821)
325 PRK05896 DNA polymerase III su 92.3 1.1 2.3E-05 51.4 11.3 42 211-258 118-159 (605)
326 TIGR00362 DnaA chromosomal rep 92.3 1.2 2.5E-05 49.2 11.6 16 108-123 138-153 (405)
327 TIGR03420 DnaA_homol_Hda DnaA 92.3 0.56 1.2E-05 46.9 8.4 19 106-124 38-56 (226)
328 PF01695 IstB_IS21: IstB-like 92.3 0.23 4.9E-06 48.1 5.2 42 105-146 46-89 (178)
329 TIGR00708 cobA cob(I)alamin ad 92.2 0.96 2.1E-05 43.3 9.3 52 205-259 90-141 (173)
330 KOG0701 dsRNA-specific nucleas 92.2 0.088 1.9E-06 65.5 2.8 95 316-410 293-399 (1606)
331 PRK08939 primosomal protein Dn 92.2 1.2 2.6E-05 47.0 11.0 17 106-122 156-172 (306)
332 PRK11823 DNA repair protein Ra 92.2 1.5 3.2E-05 48.9 12.2 50 106-156 80-132 (446)
333 PRK05748 replicative DNA helic 92.1 1.4 2.9E-05 49.4 12.0 117 106-226 203-328 (448)
334 PRK07764 DNA polymerase III su 92.1 0.86 1.9E-05 54.5 10.8 43 211-259 119-161 (824)
335 TIGR00580 mfd transcription-re 92.0 0.73 1.6E-05 55.8 10.2 78 314-391 499-581 (926)
336 PRK13876 conjugal transfer cou 92.0 0.17 3.8E-06 58.7 4.7 56 107-163 145-201 (663)
337 PRK07940 DNA polymerase III su 91.9 2.4 5.2E-05 46.4 13.3 75 183-263 84-162 (394)
338 PRK04328 hypothetical protein; 91.9 0.71 1.5E-05 47.2 8.6 51 105-156 22-75 (249)
339 COG0552 FtsY Signal recognitio 91.9 2.3 5E-05 44.7 12.2 52 109-160 142-199 (340)
340 PHA02544 44 clamp loader, smal 91.8 1.3 2.9E-05 46.8 11.1 13 212-224 100-112 (316)
341 PRK14088 dnaA chromosomal repl 91.7 1.6 3.4E-05 48.7 11.8 18 107-124 131-148 (440)
342 PRK10919 ATP-dependent DNA hel 91.7 0.28 6E-06 57.7 6.1 62 91-154 2-70 (672)
343 PRK14951 DNA polymerase III su 91.7 1.7 3.6E-05 50.3 12.2 17 109-125 41-57 (618)
344 cd00561 CobA_CobO_BtuR ATP:cor 91.6 4.3 9.3E-05 38.4 12.8 56 205-262 88-143 (159)
345 TIGR03600 phage_DnaB phage rep 91.6 1.9 4.1E-05 47.8 12.3 147 106-256 194-353 (421)
346 PRK13341 recombination factor 91.6 0.97 2.1E-05 53.3 10.3 18 108-125 54-71 (725)
347 PRK09354 recA recombinase A; P 91.5 1.1 2.4E-05 47.9 9.8 89 106-225 60-151 (349)
348 PRK07993 DNA polymerase III su 91.5 1.1 2.4E-05 47.9 9.8 77 183-265 73-155 (334)
349 PRK08699 DNA polymerase III su 91.4 1.8 4E-05 46.0 11.4 33 92-124 2-39 (325)
350 PRK11034 clpA ATP-dependent Cl 91.4 1.8 3.9E-05 51.4 12.4 19 106-124 207-225 (758)
351 TIGR03878 thermo_KaiC_2 KaiC d 91.3 1.5 3.3E-05 45.1 10.4 52 105-156 35-92 (259)
352 COG1484 DnaC DNA replication p 91.3 0.45 9.8E-06 48.8 6.4 49 105-153 104-154 (254)
353 TIGR02760 TraI_TIGR conjugativ 91.2 0.47 1E-05 62.0 7.9 63 91-157 1019-1090(1960)
354 KOG2028 ATPase related to the 91.2 1.1 2.3E-05 47.3 8.9 21 108-128 164-184 (554)
355 PRK07133 DNA polymerase III su 91.2 2 4.4E-05 50.3 12.2 44 209-258 115-158 (725)
356 PRK06995 flhF flagellar biosyn 91.2 15 0.00032 41.3 18.5 19 106-124 256-274 (484)
357 PRK10416 signal recognition pa 91.1 3.5 7.5E-05 43.8 13.1 53 106-158 114-172 (318)
358 PHA02542 41 41 helicase; Provi 91.1 1.2 2.6E-05 49.9 10.0 31 108-138 192-225 (473)
359 PRK05636 replicative DNA helic 91.1 2.2 4.7E-05 48.3 12.1 115 108-226 267-389 (505)
360 CHL00181 cbbX CbbX; Provisiona 91.0 3.4 7.4E-05 43.2 12.9 20 106-125 59-78 (287)
361 PRK00771 signal recognition pa 90.9 3.4 7.4E-05 45.8 13.2 49 213-265 176-225 (437)
362 PRK08691 DNA polymerase III su 90.9 1.6 3.4E-05 50.7 10.9 18 108-125 40-57 (709)
363 PF03354 Terminase_1: Phage Te 90.9 0.99 2.1E-05 50.9 9.3 61 94-154 1-77 (477)
364 COG2255 RuvB Holliday junction 90.9 0.76 1.6E-05 47.0 7.3 19 107-125 53-71 (332)
365 KOG0742 AAA+-type ATPase [Post 90.8 1 2.2E-05 48.2 8.4 17 107-123 385-401 (630)
366 cd03115 SRP The signal recogni 90.8 3.8 8.3E-05 39.0 12.2 51 211-265 81-132 (173)
367 TIGR02237 recomb_radB DNA repa 90.8 1.3 2.9E-05 43.7 9.2 35 106-140 12-49 (209)
368 PF03796 DnaB_C: DnaB-like hel 90.8 0.78 1.7E-05 47.1 7.8 145 107-257 20-180 (259)
369 cd00983 recA RecA is a bacter 90.7 1.2 2.6E-05 47.2 9.1 89 106-225 55-146 (325)
370 TIGR02012 tigrfam_recA protein 90.7 1.1 2.3E-05 47.5 8.7 89 106-225 55-146 (321)
371 PRK14950 DNA polymerase III su 90.7 1.7 3.6E-05 50.4 11.1 17 109-125 41-57 (585)
372 TIGR02639 ClpA ATP-dependent C 90.7 1.8 3.9E-05 51.6 11.6 18 106-123 203-220 (731)
373 PF05876 Terminase_GpA: Phage 90.6 0.58 1.3E-05 53.7 7.1 59 91-149 16-80 (557)
374 PRK12402 replication factor C 90.6 2.4 5.1E-05 45.2 11.6 17 108-124 38-54 (337)
375 PRK14712 conjugal transfer nic 90.6 1.3 2.8E-05 56.2 10.5 57 91-147 835-900 (1623)
376 TIGR02238 recomb_DMC1 meiotic 90.5 1.3 2.7E-05 47.0 9.1 57 99-155 84-155 (313)
377 PRK14954 DNA polymerase III su 90.5 3.5 7.5E-05 47.8 13.3 42 209-256 124-165 (620)
378 PRK14953 DNA polymerase III su 90.5 2.7 5.8E-05 47.4 12.2 18 109-126 41-58 (486)
379 COG4962 CpaF Flp pilus assembl 90.5 0.48 1E-05 49.8 5.7 58 88-145 154-214 (355)
380 TIGR00767 rho transcription te 90.4 1.7 3.7E-05 47.2 10.0 20 105-124 167-186 (415)
381 PRK13880 conjugal transfer cou 90.4 0.24 5.1E-06 57.6 3.8 57 107-163 176-234 (636)
382 PRK08760 replicative DNA helic 90.3 1.8 4E-05 48.6 10.7 145 106-254 229-386 (476)
383 cd01394 radB RadB. The archaea 90.2 1.6 3.4E-05 43.5 9.2 32 106-137 19-53 (218)
384 PRK14957 DNA polymerase III su 90.1 2.5 5.4E-05 48.1 11.6 17 109-125 41-57 (546)
385 TIGR02655 circ_KaiC circadian 90.1 1.2 2.6E-05 50.3 9.0 108 99-225 251-366 (484)
386 PRK14959 DNA polymerase III su 90.0 2.6 5.7E-05 48.5 11.6 18 108-125 40-57 (624)
387 PRK14969 DNA polymerase III su 90.0 2.1 4.6E-05 48.8 11.0 17 109-125 41-57 (527)
388 PRK06904 replicative DNA helic 90.0 4.6 0.0001 45.4 13.5 118 106-226 221-348 (472)
389 PRK11054 helD DNA helicase IV; 90.0 0.7 1.5E-05 54.2 7.3 78 75-154 177-264 (684)
390 TIGR01074 rep ATP-dependent DN 90.0 0.6 1.3E-05 55.0 6.8 61 92-154 2-69 (664)
391 PF05496 RuvB_N: Holliday junc 89.9 1.1 2.4E-05 44.6 7.5 53 108-160 52-105 (233)
392 KOG2543 Origin recognition com 89.9 2 4.3E-05 45.8 9.6 137 91-260 9-161 (438)
393 PRK08533 flagellar accessory p 89.8 3.3 7.1E-05 41.8 11.1 51 105-156 23-76 (230)
394 PRK09165 replicative DNA helic 89.8 2.4 5.2E-05 48.0 11.1 117 107-226 218-355 (497)
395 TIGR00959 ffh signal recogniti 89.7 3.7 7.9E-05 45.4 12.2 53 108-160 101-160 (428)
396 PRK13833 conjugal transfer pro 89.7 0.76 1.7E-05 48.7 6.6 53 91-143 128-186 (323)
397 KOG0734 AAA+-type ATPase conta 89.6 1.9 4.1E-05 47.8 9.5 51 211-263 395-453 (752)
398 PRK05595 replicative DNA helic 89.6 1.8 3.9E-05 48.3 9.9 145 107-255 202-359 (444)
399 PRK14087 dnaA chromosomal repl 89.6 3.6 7.8E-05 46.0 12.2 15 107-121 142-156 (450)
400 PRK14086 dnaA chromosomal repl 89.5 2.1 4.6E-05 49.1 10.3 15 108-122 316-330 (617)
401 COG0556 UvrB Helicase subunit 89.5 6 0.00013 44.0 13.1 120 131-265 446-565 (663)
402 COG2804 PulE Type II secretory 89.4 0.39 8.4E-06 53.0 4.2 32 91-122 241-274 (500)
403 TIGR00665 DnaB replicative DNA 89.4 2.9 6.3E-05 46.5 11.4 116 106-225 195-318 (434)
404 cd00079 HELICc Helicase superf 89.3 4.4 9.6E-05 35.9 10.7 79 131-222 28-106 (131)
405 PRK09376 rho transcription ter 89.3 3.2 6.9E-05 45.0 10.9 19 105-123 168-186 (416)
406 KOG0741 AAA+-type ATPase [Post 89.3 2.7 5.8E-05 46.6 10.3 48 211-258 597-649 (744)
407 PRK14948 DNA polymerase III su 89.2 4.4 9.6E-05 47.1 12.9 19 107-125 39-57 (620)
408 PRK09361 radB DNA repair and r 89.2 2.8 6.1E-05 41.9 10.1 33 106-138 23-58 (225)
409 PLN03187 meiotic recombination 89.1 1.3 2.8E-05 47.5 7.9 58 99-156 114-186 (344)
410 PRK14701 reverse gyrase; Provi 89.1 2 4.4E-05 55.1 10.8 61 314-374 121-187 (1638)
411 COG1200 RecG RecG-like helicas 89.1 2 4.4E-05 49.1 9.6 76 314-389 310-390 (677)
412 CHL00095 clpC Clp protease ATP 89.1 2.9 6.4E-05 50.4 11.8 31 94-124 512-557 (821)
413 TIGR00763 lon ATP-dependent pr 89.0 5.4 0.00012 47.9 13.9 20 106-125 347-366 (775)
414 KOG2373 Predicted mitochondria 88.9 0.72 1.6E-05 48.2 5.5 117 99-226 262-388 (514)
415 KOG0738 AAA+-type ATPase [Post 88.9 0.31 6.7E-06 51.7 2.9 17 107-123 246-262 (491)
416 TIGR02397 dnaX_nterm DNA polym 88.9 2.1 4.6E-05 46.0 9.6 17 108-124 38-54 (355)
417 PF08423 Rad51: Rad51; InterP 88.9 2.1 4.5E-05 44.0 9.0 107 98-225 25-146 (256)
418 COG1222 RPT1 ATP-dependent 26S 88.7 3.7 8E-05 43.5 10.5 17 107-123 186-202 (406)
419 COG3972 Superfamily I DNA and 88.7 3.2 6.9E-05 45.6 10.3 130 90-224 161-307 (660)
420 PRK00080 ruvB Holliday junctio 88.5 0.93 2E-05 48.4 6.4 49 479-537 258-307 (328)
421 TIGR02785 addA_Gpos recombinat 88.5 1.1 2.4E-05 56.4 8.0 62 91-154 1-68 (1232)
422 PRK13894 conjugal transfer ATP 88.5 0.75 1.6E-05 48.8 5.5 52 92-143 133-190 (319)
423 KOG1513 Nuclear helicase MOP-3 88.3 0.61 1.3E-05 53.5 4.9 169 91-265 264-462 (1300)
424 PRK14963 DNA polymerase III su 88.3 3.4 7.4E-05 46.8 10.9 17 109-125 39-55 (504)
425 PF06733 DEAD_2: DEAD_2; Inte 88.2 0.4 8.7E-06 46.1 3.1 44 182-228 118-161 (174)
426 KOG1001 Helicase-like transcri 88.2 0.17 3.7E-06 58.7 0.5 118 300-417 523-643 (674)
427 PRK07471 DNA polymerase III su 88.2 4.9 0.00011 43.6 11.7 44 209-258 138-181 (365)
428 PRK08451 DNA polymerase III su 88.2 1.8 3.8E-05 49.1 8.5 16 109-124 39-54 (535)
429 PRK00440 rfc replication facto 88.1 7.8 0.00017 40.8 13.2 17 108-124 40-56 (319)
430 PRK14965 DNA polymerase III su 88.1 4.3 9.3E-05 46.9 11.9 44 210-259 117-160 (576)
431 cd01128 rho_factor Transcripti 87.9 4.7 0.0001 41.1 10.7 19 105-123 15-33 (249)
432 TIGR02640 gas_vesic_GvpN gas v 87.8 0.89 1.9E-05 46.9 5.5 40 98-137 13-52 (262)
433 TIGR00678 holB DNA polymerase 87.8 4.4 9.4E-05 39.3 10.2 25 202-226 86-110 (188)
434 TIGR02782 TrbB_P P-type conjug 87.7 1.3 2.9E-05 46.5 6.8 53 91-143 116-174 (299)
435 PRK13851 type IV secretion sys 87.6 0.76 1.6E-05 49.2 5.0 42 103-144 159-202 (344)
436 PF02456 Adeno_IVa2: Adenoviru 87.6 4.3 9.2E-05 42.1 10.0 33 109-143 90-129 (369)
437 TIGR03345 VI_ClpV1 type VI sec 87.5 14 0.00031 44.7 16.1 30 94-123 569-613 (852)
438 TIGR00631 uvrb excinuclease AB 87.4 5 0.00011 47.0 11.9 80 131-223 442-521 (655)
439 PRK08506 replicative DNA helic 87.4 4.1 9E-05 45.8 10.9 117 106-226 192-316 (472)
440 PRK10865 protein disaggregatio 87.3 3.9 8.5E-05 49.5 11.4 18 107-124 200-217 (857)
441 PRK08840 replicative DNA helic 87.3 6.4 0.00014 44.1 12.3 118 106-226 217-343 (464)
442 PRK14971 DNA polymerase III su 87.3 3.3 7.1E-05 48.1 10.3 44 209-258 118-161 (614)
443 CHL00176 ftsH cell division pr 87.2 8 0.00017 45.1 13.3 18 107-124 217-234 (638)
444 COG0593 DnaA ATPase involved i 87.1 3 6.5E-05 45.5 9.1 15 107-121 114-128 (408)
445 cd01123 Rad51_DMC1_radA Rad51_ 87.0 3.2 7E-05 41.7 9.1 19 106-124 19-37 (235)
446 PRK07004 replicative DNA helic 86.9 5.5 0.00012 44.6 11.5 117 106-226 213-338 (460)
447 TIGR00614 recQ_fam ATP-depende 86.8 4 8.7E-05 45.9 10.5 88 119-219 211-301 (470)
448 PHA03368 DNA packaging termina 86.8 21 0.00046 41.3 15.8 74 77-154 229-307 (738)
449 PRK12608 transcription termina 86.6 4.7 0.0001 43.5 10.2 30 94-123 118-150 (380)
450 KOG0333 U5 snRNP-like RNA heli 86.6 3.7 7.9E-05 45.4 9.3 79 111-192 496-576 (673)
451 COG0470 HolB ATPase involved i 86.5 3.7 8E-05 43.4 9.6 42 211-258 108-149 (325)
452 TIGR01547 phage_term_2 phage t 86.5 3.3 7.1E-05 45.4 9.4 127 108-259 3-142 (396)
453 COG0466 Lon ATP-dependent Lon 86.4 6.8 0.00015 45.2 11.7 17 106-122 350-366 (782)
454 TIGR03689 pup_AAA proteasome A 86.3 3.6 7.8E-05 46.4 9.6 18 107-124 217-234 (512)
455 TIGR03880 KaiC_arch_3 KaiC dom 85.9 6.1 0.00013 39.4 10.3 51 106-157 16-69 (224)
456 PTZ00110 helicase; Provisional 85.8 3.5 7.5E-05 47.3 9.5 60 130-191 376-435 (545)
457 TIGR03345 VI_ClpV1 type VI sec 85.6 5 0.00011 48.6 11.0 29 96-124 192-226 (852)
458 PRK04837 ATP-dependent RNA hel 85.6 2.5 5.3E-05 46.9 7.9 59 131-191 255-313 (423)
459 PRK04537 ATP-dependent RNA hel 85.5 2.4 5.3E-05 48.9 8.1 76 131-219 257-332 (572)
460 cd01130 VirB11-like_ATPase Typ 85.4 1 2.3E-05 43.7 4.3 33 91-123 9-42 (186)
461 PTZ00454 26S protease regulato 85.3 6.3 0.00014 43.2 10.7 49 2-50 16-64 (398)
462 TIGR03346 chaperone_ClpB ATP-d 85.2 3.6 7.7E-05 50.0 9.6 18 107-124 195-212 (852)
463 PRK13900 type IV secretion sys 85.2 1.1 2.4E-05 47.8 4.7 41 103-143 157-199 (332)
464 KOG0733 Nuclear AAA ATPase (VC 85.2 4.6 0.0001 45.6 9.4 19 106-124 223-241 (802)
465 COG0464 SpoVK ATPases of the A 85.1 5.3 0.00012 45.2 10.5 25 107-131 277-301 (494)
466 PF05673 DUF815: Protein of un 84.9 4.7 0.0001 40.7 8.6 88 107-194 53-151 (249)
467 PF13481 AAA_25: AAA domain; P 84.9 7 0.00015 37.8 9.9 49 105-154 31-92 (193)
468 TIGR00635 ruvB Holliday juncti 84.8 2 4.2E-05 45.3 6.4 48 480-537 238-286 (305)
469 COG2909 MalT ATP-dependent tra 84.8 3.8 8.3E-05 48.1 8.9 43 211-257 128-170 (894)
470 TIGR01054 rgy reverse gyrase. 84.8 4.4 9.6E-05 50.6 10.2 61 314-374 120-187 (1171)
471 PRK11192 ATP-dependent RNA hel 84.7 2.8 6.2E-05 46.5 7.9 59 131-191 245-303 (434)
472 COG4626 Phage terminase-like p 84.6 8.9 0.00019 43.1 11.4 64 91-154 61-141 (546)
473 PRK06647 DNA polymerase III su 84.6 8.2 0.00018 44.4 11.6 18 108-125 40-57 (563)
474 cd01393 recA_like RecA is a b 84.6 9.2 0.0002 38.1 10.9 35 106-140 19-62 (226)
475 PRK09519 recA DNA recombinatio 84.6 4.7 0.0001 47.7 9.8 89 106-225 60-151 (790)
476 COG3973 Superfamily I DNA and 84.5 2.9 6.3E-05 47.1 7.5 54 106-159 226-288 (747)
477 PRK04841 transcriptional regul 84.4 5.7 0.00012 48.6 11.1 19 105-123 31-49 (903)
478 PF03969 AFG1_ATPase: AFG1-lik 84.4 5.5 0.00012 43.0 9.6 48 105-154 61-110 (362)
479 PRK08006 replicative DNA helic 84.2 9.4 0.0002 42.9 11.7 144 107-254 225-383 (471)
480 COG1444 Predicted P-loop ATPas 84.2 10 0.00022 44.6 12.0 132 92-258 212-357 (758)
481 KOG0347 RNA helicase [RNA proc 84.0 1.5 3.3E-05 48.5 5.1 71 317-391 265-348 (731)
482 PRK06321 replicative DNA helic 84.0 10 0.00022 42.6 11.8 124 99-226 215-350 (472)
483 PF14617 CMS1: U3-containing 9 84.0 2.6 5.7E-05 42.9 6.5 83 131-223 126-212 (252)
484 KOG0745 Putative ATP-dependent 84.0 1.1 2.3E-05 48.4 3.8 22 104-125 224-245 (564)
485 cd01129 PulE-GspE PulE/GspE Th 84.0 2 4.4E-05 44.3 5.9 32 92-123 64-97 (264)
486 PF02572 CobA_CobO_BtuR: ATP:c 83.9 15 0.00033 35.1 11.3 128 109-259 6-140 (172)
487 KOG0737 AAA+-type ATPase [Post 83.8 3.2 7E-05 44.1 7.2 20 106-125 127-146 (386)
488 PRK10436 hypothetical protein; 83.8 1.8 3.8E-05 48.4 5.6 32 92-123 202-235 (462)
489 PRK10590 ATP-dependent RNA hel 83.7 3.6 7.7E-05 46.1 8.2 58 132-191 246-303 (456)
490 TIGR03743 SXT_TraD conjugative 83.6 2.6 5.6E-05 49.1 7.1 59 106-164 176-241 (634)
491 PF01443 Viral_helicase1: Vira 83.6 1.8 4E-05 43.3 5.4 15 109-123 1-15 (234)
492 PRK11776 ATP-dependent RNA hel 83.6 3.5 7.6E-05 46.2 8.1 59 131-191 242-300 (460)
493 PHA00350 putative assembly pro 83.5 2 4.3E-05 46.8 5.7 24 109-132 4-31 (399)
494 COG0513 SrmB Superfamily II DN 83.5 3.3 7E-05 47.2 7.8 60 131-192 273-332 (513)
495 PF00437 T2SE: Type II/IV secr 83.3 1 2.3E-05 46.5 3.5 39 105-143 126-167 (270)
496 TIGR00416 sms DNA repair prote 83.0 12 0.00026 41.9 11.9 57 99-156 82-146 (454)
497 CHL00095 clpC Clp protease ATP 83.0 8.2 0.00018 46.7 11.3 19 106-124 200-218 (821)
498 KOG0331 ATP-dependent RNA heli 83.0 8 0.00017 43.4 10.2 60 131-192 341-400 (519)
499 PHA03333 putative ATPase subun 82.9 15 0.00032 42.7 12.4 63 92-154 170-239 (752)
500 COG1197 Mfd Transcription-repa 82.9 13 0.00028 45.4 12.6 117 95-224 731-885 (1139)
No 1
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=6.2e-104 Score=904.26 Aligned_cols=578 Identities=39% Similarity=0.660 Sum_probs=507.9
Q ss_pred ccccc-CCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhcCCeEEEEcccHHHHH
Q 035988 67 ENWSG-TFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQ 145 (692)
Q Consensus 67 ~~w~~-~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~~~~~lvi~Pt~~L~~ 145 (692)
.+|.+ .|+|+..+...+++.|||..|||+|.++|++++.|+|++++||||+|||+||++|++..++.+|||+|+++||+
T Consensus 435 ~~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~~GiTLVISPLiSLmq 514 (1195)
T PLN03137 435 KKWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQ 514 (1195)
T ss_pred ccccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHcCCcEEEEeCHHHHHH
Confidence 35887 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCccccc
Q 035988 146 DQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCS 225 (692)
Q Consensus 146 q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~ 225 (692)
||+..+...|+++..++++....+...++..+....+.++|+|+|||++.....+...+........+.+||||||||++
T Consensus 515 DQV~~L~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVS 594 (1195)
T PLN03137 515 DQIMNLLQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVS 594 (1195)
T ss_pred HHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhh
Confidence 99999999999999999999988888888777664458999999999997654556666554445679999999999999
Q ss_pred ccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEeccCCCCcceEEEeeccCcchHHHHHHH
Q 035988 226 QWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIA 305 (692)
Q Consensus 226 ~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~l~ 305 (692)
+|||+||+.|..+..++..+|++|+++||||+++.+..++.+.|++..+.++..+++|||+.|.+..+.. .....+.
T Consensus 595 qWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~RpNL~y~Vv~k~k---k~le~L~ 671 (1195)
T PLN03137 595 QWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTK---KCLEDID 671 (1195)
T ss_pred hcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCccceEEEEeccch---hHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999887532 2345677
Q ss_pred HHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCcc
Q 035988 306 KYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVR 385 (692)
Q Consensus 306 ~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~ 385 (692)
.++.... .++++||||.|++.|+.++..|...|+.+..|||+|++++|..+++.|.+|+++|||||++|+||||+|+|+
T Consensus 672 ~~I~~~~-~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR 750 (1195)
T PLN03137 672 KFIKENH-FDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVR 750 (1195)
T ss_pred HHHHhcc-cCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCc
Confidence 7776543 567899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHHHHHHHHhhhh---------------------hhhHhHHHH
Q 035988 386 FVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFYEN---------------------SGLQNLYDI 444 (692)
Q Consensus 386 ~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~~~~l~~~~~---------------------~~~~~l~~~ 444 (692)
+||||++|+|++.|+||+|||||+|.+|.|++||+..|+..++.++.... ....+|..|
T Consensus 751 ~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~~~~~~~s~~~~~~~r~~~s~~~~e~~~~~L~~m 830 (1195)
T PLN03137 751 FVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMISQGGVEQSPMAMGYNRMASSGRILETNTENLLRM 830 (1195)
T ss_pred EEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHhccccccchhhhhhcccchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888875321 134679999
Q ss_pred HHHhcCCccchHHHHHhhhCCCc--ccccCCCc----------cchhHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhcc
Q 035988 445 VRYSQYPLHWNIEKVRLVIFEKL--QQVNLFCM----------VVLAGHAQCIISLLQDIQDNNQRLTMLQLVDKMKIKL 512 (692)
Q Consensus 445 ~~~~~~~~~crr~~ll~~f~~~~--~~C~~~Cd----------~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (692)
++||++...|||.++|.||||.+ ..|+..|| .|+|.+|+.++++|.+ .++++|...++|+|+|+.
T Consensus 831 ~~yce~~~~CRR~~lL~yFGE~~~~~~C~~~CDnC~~~~~~~~~D~T~~Aq~~ls~V~~---~~~~fg~~~iidvlrGs~ 907 (1195)
T PLN03137 831 VSYCENEVDCRRFLQLVHFGEKFDSTNCKKTCDNCSSSKSLIDKDVTEIARQLVELVKL---TGERFSSAHILEVYRGSL 907 (1195)
T ss_pred HHHHhChHhhHHHHHHHHcccccCccCCCCCCCCCCCCCcccccccHHHHHHHHHHHHH---hccCcchhheehhhhccc
Confidence 99999667999999999999986 46754576 3899999999999875 578999999999999973
Q ss_pred --------------cCCCcccCHHHHHHHHHHHHHcCcccc---------------------ccccCCCceeEEEEeecc
Q 035988 513 --------------KEIDSDLKREEIEQLVLQLIIDRVLVR---------------------IGPFSPGKKIIKLEISSV 557 (692)
Q Consensus 513 --------------~~~~~~~~~~~~~~~i~~l~~~~~l~~---------------------~~~~L~g~~~v~l~~~~~ 557 (692)
.|.|+++++.+|+++|++|+.+|||.. +.++|+|+.++.++++..
T Consensus 908 ~~~i~~~~~d~l~~~G~gk~~s~~~~~~li~~Li~~g~L~~~~~~~~~y~~~~~~L~l~~~ka~~vL~g~~~v~l~~~~~ 987 (1195)
T PLN03137 908 NQYVKKHRHETLSLHGAGKHLSKGEASRILHYLVTEDILAEDVKKSDLYGSVSSLLKVNESKAYKLFSGGQTIIMRFPSS 987 (1195)
T ss_pred cHHHHHhCcccccccCccccCCHHHHHHHHHHHHHcCCceeeccccccCCccceEEEeChHHHHHHhCCCceEEEecccc
Confidence 278999999999999999999999921 224689999999987432
Q ss_pred ccccc--------ccc-----cccc-----------cccchHHHHHHHHHHHHHHHHHh-CCCCceEeccHHHHHHHHHc
Q 035988 558 QKNTA--------DNK-----KSTK-----------RSLTSSALEFELDELRKELASIS-GGILPHSVLSSQLIRLISAR 612 (692)
Q Consensus 558 ~~~~~--------~~~-----~~~~-----------~~~~~~~l~~~l~~~r~~~a~~~-~~~~~~~i~~~~~l~~~~~~ 612 (692)
.+..+ ... .... ....++.||++|++||+++|++. .|+|||+||+|.||++||..
T Consensus 988 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~Lfe~Lr~lR~elA~e~~~~vppyvIFsD~TL~eIA~~ 1067 (1195)
T PLN03137 988 VKASKPSKFEATPAKGPLTSGKQSTLPMATPAQPPVDLNLSAILYTALRKLRTALVKEAGDGVMAYHIFGNATLQQISKR 1067 (1195)
T ss_pred cccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHhhhcCCCCeEEECHHHHHHHHHH
Confidence 11110 000 0000 01136789999999999999981 29999999999999999999
Q ss_pred CCCChhhcchhhhhhc--ccchhhhhhhHHHHHHHHhhhccCCCCC
Q 035988 613 KPSTMEEASSNHLEKI--IGKLKTGKYGSRILEVISKCGNSEQQHD 656 (692)
Q Consensus 613 ~p~~~~~~~~~~l~~i--~g~~k~~~~g~~~l~~~~~~~~~~~~~~ 656 (692)
+|.|.++ |++| ||+.|+++||++||++|++|..+.+...
T Consensus 1068 ~P~T~~e-----Ll~I~GVG~~KlekYG~~fL~vI~~~~~ey~~~~ 1108 (1195)
T PLN03137 1068 IPRTKEE-----LLEINGLGKAKVSKYGDRLLETIESTINEYYKTD 1108 (1195)
T ss_pred CCCCHHH-----HhcCCCccHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 9999999 9999 9999999999999999999987666444
No 2
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.4e-101 Score=842.61 Aligned_cols=541 Identities=39% Similarity=0.645 Sum_probs=490.3
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHcCCC
Q 035988 78 RADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMCLAALGIP 157 (692)
Q Consensus 78 ~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~~~~~lvi~Pt~~L~~q~~~~l~~~gi~ 157 (692)
.+...|++.|||..|||.|.++|..+++|+|+|+++|||+|||+|||+|+++..|.+|||+|+++||+||++.++..|+.
T Consensus 4 ~~~~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~~G~TLVVSPLiSLM~DQV~~l~~~Gi~ 83 (590)
T COG0514 4 EAQQVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLLEGLTLVVSPLISLMKDQVDQLEAAGIR 83 (590)
T ss_pred HHHHHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhcCCCEEEECchHHHHHHHHHHHHHcCce
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHH
Q 035988 158 AHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKN 237 (692)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~ 237 (692)
+..++|..+..++..++..+..+ ..+++|.+||++.+. .|++.+.. ..+.++|||||||+++|||+|||+|.+
T Consensus 84 A~~lnS~l~~~e~~~v~~~l~~g--~~klLyisPErl~~~-~f~~~L~~----~~i~l~vIDEAHCiSqWGhdFRP~Y~~ 156 (590)
T COG0514 84 AAYLNSTLSREERQQVLNQLKSG--QLKLLYISPERLMSP-RFLELLKR----LPISLVAIDEAHCISQWGHDFRPDYRR 156 (590)
T ss_pred eehhhcccCHHHHHHHHHHHhcC--ceeEEEECchhhcCh-HHHHHHHh----CCCceEEechHHHHhhcCCccCHhHHH
Confidence 99999999999999999999988 899999999999865 77777763 589999999999999999999999999
Q ss_pred HHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEeccCCCCcceEEEeeccCcchHHHHHHHHHHHH-hCCCCC
Q 035988 238 LGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQE-SYPNSE 316 (692)
Q Consensus 238 l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~l~~~l~~-~~~~~~ 316 (692)
++.+...+|+.|+++||||+++.+..+|.+.|++..+..+..+++|||++|.+..+.... ..+. ++.+ .....+
T Consensus 157 lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~~~~~----~q~~-fi~~~~~~~~~ 231 (590)
T COG0514 157 LGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEKGEPS----DQLA-FLATVLPQLSK 231 (590)
T ss_pred HHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhhhcccHH----HHHH-HHHhhccccCC
Confidence 999999999999999999999999999999999999999999999999999999876322 2222 4442 122677
Q ss_pred ceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEEeCCCCCH
Q 035988 317 SGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSV 396 (692)
Q Consensus 317 ~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~~P~s~ 396 (692)
++||||.|++.++.++++|...|+.+..|||||+.++|..++++|.+++++|+|||.+||||||+||||+||||++|.|+
T Consensus 232 ~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~ 311 (590)
T COG0514 232 SGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSI 311 (590)
T ss_pred CeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCeeEeecCCCCHHHHHHHHhhh-------hhhhHhHHHHHHHhcCCccchHHHHHhhhCCCc-c
Q 035988 397 ETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFYE-------NSGLQNLYDIVRYSQYPLHWNIEKVRLVIFEKL-Q 468 (692)
Q Consensus 397 ~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~~~~l~~~~-------~~~~~~l~~~~~~~~~~~~crr~~ll~~f~~~~-~ 468 (692)
++|+|++|||||||.++.|++||++.|....+.++... .....++..|..||+ +..|||..++.|||++. .
T Consensus 312 EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~~~~~~~~~~~~~~kl~~~~~~~e-~~~crr~~ll~yfge~~~~ 390 (590)
T COG0514 312 ESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQSKPDEEQKQIELAKLRQMIAYCE-TQTCRRLVLLKYFGEDEPE 390 (590)
T ss_pred HHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcc-cccchHHHHHHhcCccccc
Confidence 99999999999999999999999999999888888764 234578999999999 56699999999999975 4
Q ss_pred cccCCCc--------cchhHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhcc--------------cCCCcccCHHHHHH
Q 035988 469 QVNLFCM--------VVLAGHAQCIISLLQDIQDNNQRLTMLQLVDKMKIKL--------------KEIDSDLKREEIEQ 526 (692)
Q Consensus 469 ~C~~~Cd--------~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~ 526 (692)
.| ++|| .|.|.+++++++++.++ +++++..+++++++|+. .|.|++.+..+|..
T Consensus 391 ~c-~~c~~c~~~~~~~d~t~~a~~~ls~~~r~---~~~~~~~~~~~~l~g~~~~~~~~~~~~~l~~~G~~k~~~~~~~~~ 466 (590)
T COG0514 391 PC-GNCDNCLDTPKQFDGTIEAQKVLSCIYRM---GQRFGVGYVIDVLRGSKNLKIRLLGHEKLSTYGIGKDLSKKTWGS 466 (590)
T ss_pred cc-cCCCcccCcchhcchHHHHHHHHHhHhhh---hhhhhHHHHHHHHhcccchhhhhcccccccccCCCcccCccchhh
Confidence 55 5566 79999999999998764 66799999999999963 27899999999999
Q ss_pred HHHHHHHcCccc------------cccccCCCceeEEEEeecccccccccccccccccchHHHHHHHHHHHHHHHHHhCC
Q 035988 527 LVLQLIIDRVLV------------RIGPFSPGKKIIKLEISSVQKNTADNKKSTKRSLTSSALEFELDELRKELASISGG 594 (692)
Q Consensus 527 ~i~~l~~~~~l~------------~~~~~L~g~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~~~a~~~~~ 594 (692)
++++|+..|++. ...++|+|+..++++.+..++.... .+..||++|+.||+++|++ .+
T Consensus 467 ~~~~l~~~~~~~~~~~~~~l~l~~~~~~vl~ge~~~~l~~~~~~~~~~~---------~~~~lf~~lr~~r~~~a~~-~~ 536 (590)
T COG0514 467 LIRQLIALGLLRQSLGTPGLKLTEKARNVLRGELSVELAVPRLRALSIG---------EDRDLFERLRALRKEIADE-EN 536 (590)
T ss_pred hHHHHHhcCceeecCCcccccccHhhhHhhccceeeeeccccccccccc---------ccHHHHHHHHHHHHHhhhh-hc
Confidence 999999999991 1224699999999998333322211 1777999999999999999 89
Q ss_pred CCceEeccHHHHHHHHHcCCCChhhcchhhhhhc--ccchhhhhhhHHHHHHHHhhhc
Q 035988 595 ILPHSVLSSQLIRLISARKPSTMEEASSNHLEKI--IGKLKTGKYGSRILEVISKCGN 650 (692)
Q Consensus 595 ~~~~~i~~~~~l~~~~~~~p~~~~~~~~~~l~~i--~g~~k~~~~g~~~l~~~~~~~~ 650 (692)
+|||+||+|+||.+||+.+|.+..+ |.+| ||..|+++||..|+++|++|..
T Consensus 537 vp~~vif~d~tl~~ma~~~p~~~~~-----~~~i~gvg~~k~~~yg~~fl~~i~~~~~ 589 (590)
T COG0514 537 VPPYVVFSDATLKEMAEKQPQSADE-----LLSINGVGEAKLERYGQAFLAVIQAHAA 589 (590)
T ss_pred CCceEEecchHHHHHHHHcCCCHHH-----HHHhcCCcccchhhccHHHHHHHHHhcc
Confidence 9999999999999999999999999 9999 9999999999999999998864
No 3
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=4.8e-95 Score=828.62 Aligned_cols=557 Identities=36% Similarity=0.587 Sum_probs=492.2
Q ss_pred CCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHH
Q 035988 72 TFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMCL 151 (692)
Q Consensus 72 ~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~~~~~lvi~Pt~~L~~q~~~~l 151 (692)
.++.+....+.|++.|||+.|||+|.++|+++++|+|++++||||+|||+||++|++...+.+|||+|+++|+.|+++.+
T Consensus 6 ~~~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~~g~tlVisPl~sL~~dqv~~l 85 (607)
T PRK11057 6 VLNLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVLDGLTLVVSPLISLMKDQVDQL 85 (607)
T ss_pred cCCchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHcCCCEEEEecHHHHHHHHHHHH
Confidence 45677778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCc
Q 035988 152 AALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDF 231 (692)
Q Consensus 152 ~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~f 231 (692)
+..|+.+..+++..........+..+..+ ..+++|+||+++... .|.+.+. ..++++|||||||++++||++|
T Consensus 86 ~~~gi~~~~~~s~~~~~~~~~~~~~~~~g--~~~il~~tPe~l~~~-~~~~~l~----~~~l~~iVIDEaH~i~~~G~~f 158 (607)
T PRK11057 86 LANGVAAACLNSTQTREQQLEVMAGCRTG--QIKLLYIAPERLMMD-NFLEHLA----HWNPALLAVDEAHCISQWGHDF 158 (607)
T ss_pred HHcCCcEEEEcCCCCHHHHHHHHHHHhCC--CCcEEEEChHHhcCh-HHHHHHh----hCCCCEEEEeCccccccccCcc
Confidence 99999999999998887777777777665 789999999998743 3444333 3579999999999999999999
Q ss_pred hHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEeccCCCCcceEEEeeccCcchHHHHHHHHHHHHh
Q 035988 232 RPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQES 311 (692)
Q Consensus 232 r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~l~~~l~~~ 311 (692)
++.|..+..++..+|+.|++++|||+++.+..++...+++..+..+..++++||+.|.+..... ....+..++...
T Consensus 159 r~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~nl~~~v~~~~~----~~~~l~~~l~~~ 234 (607)
T PRK11057 159 RPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYTLVEKFK----PLDQLMRYVQEQ 234 (607)
T ss_pred cHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCCCCCcceeeeeeccc----hHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999988876543 245667777654
Q ss_pred CCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEEeC
Q 035988 312 YPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHS 391 (692)
Q Consensus 312 ~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~ 391 (692)
.++++||||+|++.|+.++..|...|+.+..|||+|++++|..+++.|++|+++|||||++++||||+|+|++||||+
T Consensus 235 --~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d 312 (607)
T PRK11057 235 --RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFD 312 (607)
T ss_pred --CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeC
Confidence 778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHHHHHHHHhhhh------hhhHhHHHHHHHhcCCccchHHHHHhhhCC
Q 035988 392 LSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFYEN------SGLQNLYDIVRYSQYPLHWNIEKVRLVIFE 465 (692)
Q Consensus 392 ~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~~~~l~~~~~------~~~~~l~~~~~~~~~~~~crr~~ll~~f~~ 465 (692)
+|.|+++|+||+|||||+|.+|.|++||++.|...++.++.... ....++..|..||+ +..|||.++++||||
T Consensus 313 ~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~Crr~~~l~yf~e 391 (607)
T PRK11057 313 IPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPAGQQQDIERHKLNAMGAFAE-AQTCRRLVLLNYFGE 391 (607)
T ss_pred CCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh-cccCHHHHHHHHhCC
Confidence 99999999999999999999999999999999988888876432 23457889999998 678999999999999
Q ss_pred CcccccCCCc--------cchhHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhcc--------------cCCCcccCHHH
Q 035988 466 KLQQVNLFCM--------VVLAGHAQCIISLLQDIQDNNQRLTMLQLVDKMKIKL--------------KEIDSDLKREE 523 (692)
Q Consensus 466 ~~~~C~~~Cd--------~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~ 523 (692)
.+..||++|| .|.+.+|+.+++++.+ .++++|...++++|+|+. .|.|+++++.+
T Consensus 392 ~~~~~c~~cd~c~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~ 468 (607)
T PRK11057 392 GRQEPCGNCDICLDPPKQYDGLEDAQKALSCIYR---VNQRFGMGYVVEVLRGANNQRIRDYGHDKLKVYGIGRDKSHEH 468 (607)
T ss_pred CCCCCCCCCCCCCCcccccccHHHHHHHHHHHHH---hcCCCCcceeeeeeeccCcchhhhcccccCCccCcCCcCCHHH
Confidence 8755557777 5888999999998875 478999999999999973 27899999999
Q ss_pred HHHHHHHHHHcCcc---------cc----ccccCCCceeEEEEeecccccccccccccccccchHHHHHHHHHHHHHHHH
Q 035988 524 IEQLVLQLIIDRVL---------VR----IGPFSPGKKIIKLEISSVQKNTADNKKSTKRSLTSSALEFELDELRKELAS 590 (692)
Q Consensus 524 ~~~~i~~l~~~~~l---------~~----~~~~L~g~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~~~a~ 590 (692)
|++++++|+.+||| ++ +..+|+|+.++.+..+...+...........+..+..||++|++||+++|+
T Consensus 469 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Lr~~R~~~a~ 548 (607)
T PRK11057 469 WVSVIRQLIHLGLVTQNIAQHSALQLTEAARPVLRGEVSLQLAVPRIVALKPRAMQKSFGGNYDRKLFAKLRKLRKSIAD 548 (607)
T ss_pred HHHHHHHHHHcCCceeccCccceEEECHHHHHHhcCCceEEEecccccccccccccccccccchHHHHHHHHHHHHHHHH
Confidence 99999999999999 22 234799999999877543221111111112244588999999999999999
Q ss_pred HhCCCCceEeccHHHHHHHHHcCCCChhhcchhhhhhc--ccchhhhhhhHHHHHHHHhhhcc
Q 035988 591 ISGGILPHSVLSSQLIRLISARKPSTMEEASSNHLEKI--IGKLKTGKYGSRILEVISKCGNS 651 (692)
Q Consensus 591 ~~~~~~~~~i~~~~~l~~~~~~~p~~~~~~~~~~l~~i--~g~~k~~~~g~~~l~~~~~~~~~ 651 (692)
+ .++|||+||+|.||++||..+|.|.++ |.+| ||++|+++||++||++|+.|+++
T Consensus 549 ~-~~~~~~~if~d~tL~~ia~~~P~t~~~-----l~~i~Gvg~~K~~~yg~~~l~~i~~~~~~ 605 (607)
T PRK11057 549 E-ENIPPYVVFNDATLIEMAEQMPITASE-----MLSVNGVGQRKLERFGKPFMALIRAHVDG 605 (607)
T ss_pred H-cCCCCeEEECHHHHHHHHHHCCCCHHH-----HcCCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 9 899999999999999999999999999 9999 99999999999999999999753
No 4
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1.7e-90 Score=793.47 Aligned_cols=546 Identities=37% Similarity=0.587 Sum_probs=480.3
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHcCCCEE
Q 035988 80 DDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMCLAALGIPAH 159 (692)
Q Consensus 80 ~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~ 159 (692)
.+.|++.|||++|||+|.++|++++.|+|++++||||+|||+||++|++..++.++||+|+++|++|+++.++.+|+.+.
T Consensus 2 ~~~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~~g~~lVisPl~sL~~dq~~~l~~~gi~~~ 81 (591)
T TIGR01389 2 QQVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLLKGLTVVISPLISLMKDQVDQLRAAGVAAA 81 (591)
T ss_pred hHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHcCCcEE
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHH
Q 035988 160 MLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLG 239 (692)
Q Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~ 239 (692)
.++++.+..+...++..+..+ .++|+|+||+++... .+...+ ...++++||||||||+++||++|++.|..+.
T Consensus 82 ~~~s~~~~~~~~~~~~~l~~~--~~~il~~tpe~l~~~-~~~~~l----~~~~l~~iViDEaH~i~~~g~~frp~y~~l~ 154 (591)
T TIGR01389 82 YLNSTLSAKEQQDIEKALVNG--ELKLLYVAPERLEQD-YFLNML----QRIPIALVAVDEAHCVSQWGHDFRPEYQRLG 154 (591)
T ss_pred EEeCCCCHHHHHHHHHHHhCC--CCCEEEEChhHhcCh-HHHHHH----hcCCCCEEEEeCCcccccccCccHHHHHHHH
Confidence 999999988887777777766 899999999998743 343333 3468999999999999999999999999999
Q ss_pred HHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEeccCCCCcceEEEeeccCcchHHHHHHHHHHHHhCCCCCceE
Q 035988 240 ILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGI 319 (692)
Q Consensus 240 ~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~~I 319 (692)
.+...+|+.|++++|||+++.+..++...+++..+..+..+++++|+.|.+..... ....+.+++... .+.++|
T Consensus 155 ~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~----~~~~l~~~l~~~--~~~~~I 228 (591)
T TIGR01389 155 SLAERFPQVPRIALTATADAETRQDIRELLRLADANEFITSFDRPNLRFSVVKKNN----KQKFLLDYLKKH--RGQSGI 228 (591)
T ss_pred HHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCCCCcEEEEEeCCC----HHHHHHHHHHhc--CCCCEE
Confidence 99999999999999999999999999999999988888899999999998876543 345677777755 578999
Q ss_pred EEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEEeCCCCCHHHH
Q 035988 320 VYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETY 399 (692)
Q Consensus 320 If~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y 399 (692)
|||+|++.|+.+++.|...|+++..|||+|+.++|..+++.|.+|+++|||||++++||||+|+|++||||++|.|+++|
T Consensus 229 If~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y 308 (591)
T TIGR01389 229 IYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESY 308 (591)
T ss_pred EEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCeeEeecCCCCHHHHHHHHhhh-------hhhhHhHHHHHHHhcCCccchHHHHHhhhCCCcccccC
Q 035988 400 YQESGRAGRDGLPSECLLFFRPADVPRQSSMVFYE-------NSGLQNLYDIVRYSQYPLHWNIEKVRLVIFEKLQQVNL 472 (692)
Q Consensus 400 ~Qr~GRagR~G~~g~~i~l~~~~d~~~~~~l~~~~-------~~~~~~l~~~~~~~~~~~~crr~~ll~~f~~~~~~C~~ 472 (692)
+|++|||||+|.+|.|+++|++.|...++.++... .....++..|..||+ +..|||..+++|||+....+|+
T Consensus 309 ~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~-~~~c~r~~~~~~f~~~~~~~c~ 387 (591)
T TIGR01389 309 YQEAGRAGRDGLPAEAILLYSPADIALLKRRIEQSEADDDYKQIEREKLRAMIAYCE-TQTCRRAYILRYFGENEVEPCG 387 (591)
T ss_pred hhhhccccCCCCCceEEEecCHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHc-ccccHhHHHHHhcCCCCCCCCC
Confidence 99999999999999999999999999888887652 123567889999998 6899999999999997633446
Q ss_pred CCc--------cchhHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhcc--------------cCCCcccCHHHHHHHHHH
Q 035988 473 FCM--------VVLAGHAQCIISLLQDIQDNNQRLTMLQLVDKMKIKL--------------KEIDSDLKREEIEQLVLQ 530 (692)
Q Consensus 473 ~Cd--------~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~i~~ 530 (692)
+|| .|+|.+++.+++++.+ .++++++..++++++|+. .|.|++++..+|+.++++
T Consensus 388 ~cd~c~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 464 (591)
T TIGR01389 388 NCDNCLDPPKSYDATVEAQKALSCVYR---MGQRFGVGYIIEVLRGSKNDKILQKGHDQLSTYGIGKDYTQKEWRSLIDQ 464 (591)
T ss_pred CCCCCCCCCceeehHHHHHHHHHHHHH---hcCCCchhHhHHHHhCccchhHHhcCcccCCccCcCCCCCHHHHHHHHHH
Confidence 777 6899999999999875 467899999999999863 267899999999999999
Q ss_pred HHHcCccc-------------cccccCCCceeEEEEeecccccccccccccccccchHHHHHHHHHHHHHHHHHhCCCCc
Q 035988 531 LIIDRVLV-------------RIGPFSPGKKIIKLEISSVQKNTADNKKSTKRSLTSSALEFELDELRKELASISGGILP 597 (692)
Q Consensus 531 l~~~~~l~-------------~~~~~L~g~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~~~a~~~~~~~~ 597 (692)
|+..|||. +..++|.++..+.++.......+....+.......+.+||++|++||+++|++ .++||
T Consensus 465 l~~~~~l~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~wR~~~A~~-~~~p~ 543 (591)
T TIGR01389 465 LIAEGLLTENDEIYIGLQLTEAARKVLKNEVEVLLRPFKVVAKEKTRVQKNLSVGVDNALFEALRELRKEQADE-QNVPP 543 (591)
T ss_pred HHHcCCceeccCcCceEEeccchhhhccCcceeeecccccccchhhhhccccccccHHHHHHHHHHHHHHHHHH-cCCCC
Confidence 99999992 23357888888877653221111100011111223569999999999999999 89999
Q ss_pred eEeccHHHHHHHHHcCCCChhhcchhhhhhc--ccchhhhhhhHHHHHHHHhh
Q 035988 598 HSVLSSQLIRLISARKPSTMEEASSNHLEKI--IGKLKTGKYGSRILEVISKC 648 (692)
Q Consensus 598 ~~i~~~~~l~~~~~~~p~~~~~~~~~~l~~i--~g~~k~~~~g~~~l~~~~~~ 648 (692)
|+||+|.+|.+||..+|.|.++ |..| ||+.|+++||++||++|++|
T Consensus 544 ~~If~d~~L~~ia~~~P~~~~~-----l~~i~gv~~~k~~~~G~~~l~~i~~~ 591 (591)
T TIGR01389 544 YVIFSDSTLREMAEKRPATLNA-----LLKIKGVGQNKLDRYGEAFLEVIREY 591 (591)
T ss_pred eEEECHHHHHHHHHHCCCCHHH-----HhCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999 9999 99999999999999999875
No 5
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=2.4e-88 Score=675.69 Aligned_cols=548 Identities=41% Similarity=0.726 Sum_probs=494.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCCCccCCCCCcccccccc-CCCCcHHHHH
Q 035988 4 EEILQELENVEAEVRLVQEQIKQLVDRQDQLYERQSELKSLLEAFE-ASRGSPIQYGGSSSTAVENWSG-TFEWDSRADD 81 (692)
Q Consensus 4 ~~~~~el~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~w~~-~~~~~~~~~~ 81 (692)
.++.+||..++.|+-.++.++.++++++.++.+....++.+++-.. .+.+.... .+-......|.. .|||+.+..+
T Consensus 7 s~ls~el~~i~~ei~~id~qiqel~~kkqel~qkkk~i~kkielk~~edsdag~~--~eyd~spaawdkd~fpws~e~~~ 84 (695)
T KOG0353|consen 7 SALSEELADIDGEIGAIDIQIQELREKKQELIQKKKAIEKKIELKCLEDSDAGAS--NEYDRSPAAWDKDDFPWSDEAKD 84 (695)
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccc--ccccCCccccccCCCCCchHHHH
Confidence 5788999999999999999999999999999988888888876322 11111111 112444557988 9999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHcCCCEEEE
Q 035988 82 VRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHML 161 (692)
Q Consensus 82 ~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~ 161 (692)
.|++.|.+..|||.|..+|++.+.|.|+++++|||+|||+||++|+++..+.+|||+|+++|+++|.-.++.+|+.+.++
T Consensus 85 ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~adg~alvi~plislmedqil~lkqlgi~as~l 164 (695)
T KOG0353|consen 85 ILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCADGFALVICPLISLMEDQILQLKQLGIDASML 164 (695)
T ss_pred HHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhcCCceEeechhHHHHHHHHHHHHHhCcchhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHHH
Q 035988 162 TSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGIL 241 (692)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l 241 (692)
+...+.++...+...+.+...+.+++|+|||++..+..|++.+++.+....+.++.|||+||.++|||+|||+|..|+.+
T Consensus 165 nansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~il 244 (695)
T KOG0353|consen 165 NANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGIL 244 (695)
T ss_pred cCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHHH
Confidence 99999999988888888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEeccCCCCcceEEEeeccCcchHHHHHHHHHHHHhCCCCCceEEE
Q 035988 242 KTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVY 321 (692)
Q Consensus 242 ~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf 321 (692)
++.|+++|++++|||++..+.++....|++.....|..+|+|||+.|.++.++....+..+.+.++|+..+ .++.+|||
T Consensus 245 krqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~yev~qkp~n~dd~~edi~k~i~~~f-~gqsgiiy 323 (695)
T KOG0353|consen 245 KRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKYEVRQKPGNEDDCIEDIAKLIKGDF-AGQSGIIY 323 (695)
T ss_pred HHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCceeEeeeCCCChHHHHHHHHHHhcccc-CCCcceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887 89999999
Q ss_pred EeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEEeCCCCCHHHHHH
Q 035988 322 CFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQ 401 (692)
Q Consensus 322 ~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Q 401 (692)
|.|+++|+.++..|+.+|+.+..||+.|.+++|.-+.+.|..|+++|+|||.+||||||.|+||+|||+.+|+|+++|||
T Consensus 324 c~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyq 403 (695)
T KOG0353|consen 324 CFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQ 403 (695)
T ss_pred EeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -------------------------------------------HHhhcCCCCCCCeeEeecCCCCHHHHHHHHhhhhhhh
Q 035988 402 -------------------------------------------ESGRAGRDGLPSECLLFFRPADVPRQSSMVFYENSGL 438 (692)
Q Consensus 402 -------------------------------------------r~GRagR~G~~g~~i~l~~~~d~~~~~~l~~~~~~~~ 438 (692)
+.|||||+|.++.|++||...|+.++..|+..++.+.
T Consensus 404 asarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~difk~ssmv~~e~~g~ 483 (695)
T KOG0353|consen 404 ASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADIFKISSMVQMENTGI 483 (695)
T ss_pred HHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHHHhHHHHHHHHhhhH
Confidence 8899999999999999999999999999999999999
Q ss_pred HhHHHHHHHhcCCccchHHHHHhhhCCCc--ccccCCCc----------cchhHHHHHHHHHHHHHH-----------hc
Q 035988 439 QNLYDIVRYSQYPLHWNIEKVRLVIFEKL--QQVNLFCM----------VVLAGHAQCIISLLQDIQ-----------DN 495 (692)
Q Consensus 439 ~~l~~~~~~~~~~~~crr~~ll~~f~~~~--~~C~~~Cd----------~d~~~~~~~~~~~~~~~~-----------~~ 495 (692)
++|+.|++||.+.+.|||..+.++|+|.| .+|+.+|| .+.+.+++.++.+..... ..
T Consensus 484 q~ly~mv~y~~d~s~crrv~laehfde~w~~~~c~k~cd~c~~~n~f~~~n~~ey~~dl~e~~kt~~~~i~e~ln~~k~~ 563 (695)
T KOG0353|consen 484 QKLYEMVRYAADISKCRRVKLAEHFDEAWEPEACNKMCDNCCKDNAFEGKNIKEYCRDLIEAAKTQAEEIEEHLNPAKDG 563 (695)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCHHHHHHHhhhhccCccccccchHHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 99999999999999999999999999998 67766666 456666777777665211 12
Q ss_pred CCCccHHHHHHHHHhcccCCCcccCHHHHHHHHHHHHHcCcc--------------ccccc---cCCCc-eeEEEEeecc
Q 035988 496 NQRLTMLQLVDKMKIKLKEIDSDLKREEIEQLVLQLIIDRVL--------------VRIGP---FSPGK-KIIKLEISSV 557 (692)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~l--------------~~~~~---~L~g~-~~v~l~~~~~ 557 (692)
.+++|-+.+...+.|+ +...+.+++++.+|-+++.+||| ++.|| +|+|+ -.+.+....+
T Consensus 564 ~~~i~~~~~~~~la~~---l~~s~~re~~ekii~~~lie~ylkedf~ft~ya~isyl~ig~k~~l~n~ea~ai~mqvtks 640 (695)
T KOG0353|consen 564 DGRIGGGAAKELLAGK---LAGSLNREDCEKIIAHFLIEGYLKEDFHFTAYATISYLKIGPKANLLNGEADAIKMQVTKS 640 (695)
T ss_pred ccccccchHHHHHhhh---hcCCCCHHHHHHHHHHHHHHHHHhhccceEEEEEEEEEEecchhhhhcCccceEEEEeecc
Confidence 3555555566666654 45689999999999999999999 45666 69998 5566665543
No 6
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=2e-78 Score=696.43 Aligned_cols=569 Identities=37% Similarity=0.542 Sum_probs=478.8
Q ss_pred CcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHc
Q 035988 75 WDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMCLAAL 154 (692)
Q Consensus 75 ~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~~~~~lvi~Pt~~L~~q~~~~l~~~ 154 (692)
|..+....++..||+..|||.|.+||.+++.|+|+++.||||+||++|||+||++.++.+|||+|+++||+||+..+...
T Consensus 248 ~t~~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~~gitvVISPL~SLm~DQv~~L~~~ 327 (941)
T KOG0351|consen 248 ETKELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLLGGVTVVISPLISLMQDQVTHLSKK 327 (941)
T ss_pred cchHHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccccCCceEEeccHHHHHHHHHHhhhhc
Confidence 55578889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHH
Q 035988 155 GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPD 234 (692)
Q Consensus 155 gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~ 234 (692)
+|++..++++.+..++..++..+..+...++|+|+|||++.....+...+......+-+.++|||||||+++|||+|||.
T Consensus 328 ~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~ 407 (941)
T KOG0351|consen 328 GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPS 407 (941)
T ss_pred CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHH
Confidence 99999999999999999999999998889999999999999988888887777666669999999999999999999999
Q ss_pred HHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEeccCCCCcceEEEeeccCcchHHHHHHHHHHHHhCCC
Q 035988 235 YKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPN 314 (692)
Q Consensus 235 ~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~l~~~l~~~~~~ 314 (692)
|++++.++..+|++|+|++|||++..+..++.+.|++.++..+..+|+|+|++|.|..+... .....+...+.... +
T Consensus 408 Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~NL~yeV~~k~~~--~~~~~~~~~~~~~~-~ 484 (941)
T KOG0351|consen 408 YKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSSFNRPNLKYEVSPKTDK--DALLDILEESKLRH-P 484 (941)
T ss_pred HHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecccCCCCCceEEEEeccCc--cchHHHHHHhhhcC-C
Confidence 99999999999999999999999999999999999999999999999999999999998742 33455666666554 8
Q ss_pred CCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEEeCCCC
Q 035988 315 SESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSK 394 (692)
Q Consensus 315 ~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~~P~ 394 (692)
++++||||.+++.|+.++..|+..|+.+..||+||++.+|..+++.|..++++|+|||.+||||||+||||+||||++|+
T Consensus 485 ~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPk 564 (941)
T KOG0351|consen 485 DQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPK 564 (941)
T ss_pred CCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhcCCCCCCCeeEeecCCCCHHHHHHHHhhhh--------hhhHhHHHHHHHhcCCccchHHHHHhhhCCC
Q 035988 395 SVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFYEN--------SGLQNLYDIVRYSQYPLHWNIEKVRLVIFEK 466 (692)
Q Consensus 395 s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~~~~l~~~~~--------~~~~~l~~~~~~~~~~~~crr~~ll~~f~~~ 466 (692)
|++.|||++|||||||.++.|++||+..|...++.++..++ ....++.+|+.||+|...|||++++.|||+.
T Consensus 565 s~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s~~~~~~~~~~~~~~~l~~~~~yCen~t~crr~~~l~~fge~ 644 (941)
T KOG0351|consen 565 SFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLTSGNRLSGVKKFTRLLELVQVVTYCENETDCRRKQILEYFGEE 644 (941)
T ss_pred hHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHHccccccchhhccchhhHHHHHHhhcCccchhHHHHHHhcccc
Confidence 99999999999999999999999999999999999998762 2467789999999999999999999999999
Q ss_pred c--cccc--CCCc------------cchhHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhcc----------------cC
Q 035988 467 L--QQVN--LFCM------------VVLAGHAQCIISLLQDIQDNNQRLTMLQLVDKMKIKL----------------KE 514 (692)
Q Consensus 467 ~--~~C~--~~Cd------------~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~ 514 (692)
+ ..|. ..|| .|++..+..+...+.... ..+++|+..+.+..+|+. .|
T Consensus 645 f~~~~c~~~k~cd~C~~~~dv~~~~~d~~~~~~~~~~~v~~~~-~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g 723 (941)
T KOG0351|consen 645 FDSKHCKKHKTCDNCRESLDVAYELRDVTLTALDAHPLVTIYT-LSERFTLAAIEDVGGGTLIQKAAKAEPLHDGLPAHG 723 (941)
T ss_pred cchhhccCCchHHHhhcccccchHHHHHHHHHHHHhhhheeee-ccchhhhhhHHhcccccHhHHHHHhcCccccccccC
Confidence 7 4564 2565 566677777777665433 237899999999888752 25
Q ss_pred CCcccCHHHHHHHHHHHHHcCcccc-------------------cc--ccCCCceeEEEEeecccccccc--------cc
Q 035988 515 IDSDLKREEIEQLVLQLIIDRVLVR-------------------IG--PFSPGKKIIKLEISSVQKNTAD--------NK 565 (692)
Q Consensus 515 ~~~~~~~~~~~~~i~~l~~~~~l~~-------------------~~--~~L~g~~~v~l~~~~~~~~~~~--------~~ 565 (692)
.|+.+++.+|++++++|+.+|++.. .. .++.+...+.+.........+. +.
T Consensus 724 ~~~~~~~~~~~r~~~~Lv~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~~~~s~ 803 (941)
T KOG0351|consen 724 KGKGQSTSDAERLLRKLVAEGFIEEYDSANSSYQLKSYKNLGNLALRCKVLTLRFSLKVVGEESASETKVAVKSLSGTSA 803 (941)
T ss_pred cccccccchHHHHHHHHHhhhhHHHhhhhhhhhhHhHhhhhcccccchhhhhccccccccccccchhhhcccccccchhh
Confidence 6889999999999999999999910 01 2333433333322111100000 00
Q ss_pred ----ccc----ccccchHHHHHHHHHHHHHHHHHhCCCCceEecc----------HHHHHHHHHc-CCCChhhcchhhhh
Q 035988 566 ----KST----KRSLTSSALEFELDELRKELASISGGILPHSVLS----------SQLIRLISAR-KPSTMEEASSNHLE 626 (692)
Q Consensus 566 ----~~~----~~~~~~~~l~~~l~~~r~~~a~~~~~~~~~~i~~----------~~~l~~~~~~-~p~~~~~~~~~~l~ 626 (692)
... ..+....-.|..+.+.+...+.+ .+........ +.+|..++.. .|.+... +.
T Consensus 804 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~-----~~ 877 (941)
T KOG0351|consen 804 SCSGSISPQSRSSSSTAEVSLGELTEICLRPGSR-SSTCVKSFSNANGLLEYGLERMTLEHIRESKLSDGVRG-----VV 877 (941)
T ss_pred hhccccCccccccccceeeecccchhhhhccccc-cchhHHhhhccchhhhccccccchhhhcccccCCCcee-----cc
Confidence 000 00111333566777778877777 6777766666 4455555555 6777777 66
Q ss_pred hc--ccchhhhhhhHHHHHHHHhhhccCC
Q 035988 627 KI--IGKLKTGKYGSRILEVISKCGNSEQ 653 (692)
Q Consensus 627 ~i--~g~~k~~~~g~~~l~~~~~~~~~~~ 653 (692)
.| +-..+...||..++.+...+..+..
T Consensus 878 ~i~~~~~~~~~~~~~~~~~i~~~~~~~~~ 906 (941)
T KOG0351|consen 878 RIGIVTRDKDKFGGRAIRRIFQVIYSSRV 906 (941)
T ss_pred cCCCcccccccccchhheeechhcccchh
Confidence 67 6677999999999999887764443
No 7
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.7e-72 Score=627.22 Aligned_cols=419 Identities=48% Similarity=0.818 Sum_probs=372.3
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHcCCCEEEE
Q 035988 82 VRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHML 161 (692)
Q Consensus 82 ~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~ 161 (692)
.|++.|||+.|||+|.++|+++++|+|++++||||+|||+||++|++..++.+|||+|+++|+.|+++.+...|+++..+
T Consensus 2 ~l~~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l 81 (470)
T TIGR00614 2 ILKTVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCSDGITLVISPLISLMEDQVLQLKASGIPATFL 81 (470)
T ss_pred hhHhhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHcCCcEEEEecHHHHHHHHHHHHHHcCCcEEEE
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHHH
Q 035988 162 TSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGIL 241 (692)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l 241 (692)
+++....+...++..+..+ .++|+|+||+++....++.+.+. ...++++|||||||++++||++|++.|..+..+
T Consensus 82 ~~~~~~~~~~~i~~~~~~~--~~~il~~TPe~l~~~~~~~~~l~---~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l 156 (470)
T TIGR00614 82 NSSQSKEQQKNVLTDLKDG--KIKLLYVTPEKCSASNRLLQTLE---ERKGITLIAVDEAHCISQWGHDFRPDYKALGSL 156 (470)
T ss_pred eCCCCHHHHHHHHHHHhcC--CCCEEEECHHHHcCchhHHHHHH---hcCCcCEEEEeCCcccCccccccHHHHHHHHHH
Confidence 9998888777777777655 79999999999976555655553 357899999999999999999999999999999
Q ss_pred HhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEeccCCCCcceEEEeeccCcchHHHHHHHHHHHHhCCCCCceEEE
Q 035988 242 KTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVY 321 (692)
Q Consensus 242 ~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf 321 (692)
+..+|+.|+++||||+++.+..++.+.+++..+..+..+++++|+.+.+..... ..+..+..++.... .++++|||
T Consensus 157 ~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~nl~~~v~~~~~---~~~~~l~~~l~~~~-~~~~~IIF 232 (470)
T TIGR00614 157 KQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDRPNLYYEVRRKTP---KILEDLLRFIRKEF-KGKSGIIY 232 (470)
T ss_pred HHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCCcEEEEEeCCc---cHHHHHHHHHHHhc-CCCceEEE
Confidence 999999999999999999999999999999999999999999999998887653 34566777776443 67788999
Q ss_pred EeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEEeCCCCCHHHHHH
Q 035988 322 CFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQ 401 (692)
Q Consensus 322 ~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Q 401 (692)
|+|++.|+.++..|...|+.+..|||+|++++|..+++.|++|+++|||||++++||||+|+|++|||+++|.|+++|+|
T Consensus 233 ~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Q 312 (470)
T TIGR00614 233 CPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQ 312 (470)
T ss_pred ECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCCeeEeecCCCCHHHHHHHHhhhhhh-----hHhHHHHHHHhcCCccchHHHHHhhhCCCc---------
Q 035988 402 ESGRAGRDGLPSECLLFFRPADVPRQSSMVFYENSG-----LQNLYDIVRYSQYPLHWNIEKVRLVIFEKL--------- 467 (692)
Q Consensus 402 r~GRagR~G~~g~~i~l~~~~d~~~~~~l~~~~~~~-----~~~l~~~~~~~~~~~~crr~~ll~~f~~~~--------- 467 (692)
|+|||||+|.+|.|++||++.|...++.++...... ...+..++.+|.+...|||..+++|||+.+
T Consensus 313 r~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~crr~~l~~~f~~~~~~~~~~~~~ 392 (470)
T TIGR00614 313 ESGRAGRDGLPSECHLFYAPADINRLRRLLMEEPDGQQRTYKLKLYEMMEYCLNSSTCRRLILLSHFGEKQLNKSFGIMG 392 (470)
T ss_pred hhcCcCCCCCCceEEEEechhHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhccccCHHHHHHHHcCCccccccccccc
Confidence 999999999999999999999999999887654322 123445555666689999999999999952
Q ss_pred -ccccCCCc--------------cchhHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhcc
Q 035988 468 -QQVNLFCM--------------VVLAGHAQCIISLLQDIQDNNQRLTMLQLVDKMKIKL 512 (692)
Q Consensus 468 -~~C~~~Cd--------------~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (692)
..||++|| .|++.+++.+++++.+ .++++|+..++++++|+.
T Consensus 393 ~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~ 449 (470)
T TIGR00614 393 TEKCCDNCCKRLDYKTKDVTDKVYDFGPQAQKALSAVGR---LNQKFGMGYPIDFLRGSN 449 (470)
T ss_pred CCCCCCCCCCccccccCCCChhHhhHHHHHHHHHHHHHH---hcCCCchhhhHHHHhCCc
Confidence 33557776 3677888888888764 578999999999999973
No 8
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=5e-73 Score=573.96 Aligned_cols=424 Identities=37% Similarity=0.585 Sum_probs=374.2
Q ss_pred HHHHHHHHHhcCCCCCC-HHHHHHHHHHHcC-CCEEEEecCCChhHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHc
Q 035988 77 SRADDVRLNVFGIPAYR-ANQQEIINAVLSG-RDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMCLAAL 154 (692)
Q Consensus 77 ~~~~~~l~~~fg~~~~r-~~Q~~ai~~il~g-~dviv~apTGsGKTl~~~lpal~~~~~~lvi~Pt~~L~~q~~~~l~~~ 154 (692)
..+.+.|++.||+++|. +.|.+|+..+..+ +||.|+||||+|||+|||||+|+.++.+||++|+++|++||++.|..+
T Consensus 5 r~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~~gITIV~SPLiALIkDQiDHL~~L 84 (641)
T KOG0352|consen 5 RKVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVHGGITIVISPLIALIKDQIDHLKRL 84 (641)
T ss_pred HHHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHhCCeEEEehHHHHHHHHHHHHHHhc
Confidence 45788999999999886 8999999998864 799999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHH
Q 035988 155 GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPD 234 (692)
Q Consensus 155 gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~ 234 (692)
.+++..+++-++..++..++.++....+...++|.|||+... ..|...++.+.+...+.++|||||||+++|||||||+
T Consensus 85 KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt-~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPD 163 (641)
T KOG0352|consen 85 KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAAT-DGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPD 163 (641)
T ss_pred CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhh-hhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcc
Confidence 999999999999999999999999988899999999999885 4788888888888899999999999999999999999
Q ss_pred HHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEE-EeccCCCCcceEEEeeccCcchHHHHHHHHHHHHhCC
Q 035988 235 YKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIK-FVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYP 313 (692)
Q Consensus 235 ~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~-~~~~~~r~~l~~~v~~~~~~~~~~~~~l~~~l~~~~~ 313 (692)
|..|+.|+..++++|+++||||+++.+.+++...|.+..++. |..+.-|.|++|.+..+..- .+-+..|.++-...+.
T Consensus 164 YL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~K~~I-~D~~~~LaDF~~~~LG 242 (641)
T KOG0352|consen 164 YLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHMKSFI-TDCLTVLADFSSSNLG 242 (641)
T ss_pred hhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHHHHHh-hhHhHhHHHHHHHhcC
Confidence 999999999999999999999999999999999999988764 56677899999988776542 2335566666554432
Q ss_pred -----------CCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCC
Q 035988 314 -----------NSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKP 382 (692)
Q Consensus 314 -----------~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip 382 (692)
..+.+||||.|++.||.++-.|...|+++..||+|+...+|.++++.|+++++.|++||..||||+|.|
T Consensus 243 ~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp 322 (641)
T KOG0352|consen 243 KHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKP 322 (641)
T ss_pred ChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCc
Confidence 246789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHHHHHHHHhhhh--------------hhhHhHHHHHHHh
Q 035988 383 DVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFYEN--------------SGLQNLYDIVRYS 448 (692)
Q Consensus 383 ~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~~~~l~~~~~--------------~~~~~l~~~~~~~ 448 (692)
+||+|||+++|+|+..|||+.|||||+|.++.|-+||+.+|...++.++..+- .....+..|+.||
T Consensus 323 ~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~~e~aklrek~~ke~~~k~~I~~F~k~~eFC 402 (641)
T KOG0352|consen 323 DVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVSGELAKLREKAKKEMQIKSIITGFAKMLEFC 402 (641)
T ss_pred ceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHHhhHHHHHHHhcchhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987652 2245678999999
Q ss_pred cCCccchHHHHHhhhCCCcccccCCCc-cchhHHHHHHHHHHHHHHhcCCCccHHH
Q 035988 449 QYPLHWNIEKVRLVIFEKLQQVNLFCM-VVLAGHAQCIISLLQDIQDNNQRLTMLQ 503 (692)
Q Consensus 449 ~~~~~crr~~ll~~f~~~~~~C~~~Cd-~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (692)
+ ...||+..+..|||+....|.++|| ..-+.-++..+.+..+.....+..+..+
T Consensus 403 E-~~~CRH~~ia~fFgD~~p~ckg~cd~c~~p~k~~r~~e~f~~s~~s~~~~~~~~ 457 (641)
T KOG0352|consen 403 E-SARCRHVSIASFFDDTECPCKTNCDYCRDPTKTIRNVEAFINSEASTGRSMFRK 457 (641)
T ss_pred H-HcccchHHHHHhcCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhcccccccc
Confidence 9 7899999999999998776667777 2334455556666655554444444433
No 9
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=2.2e-56 Score=503.83 Aligned_cols=424 Identities=19% Similarity=0.271 Sum_probs=326.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhccCCCCccCCCCCccccccccCCCCcHHHHHHHHHhcCC
Q 035988 14 EAEVRLVQEQIKQLVDRQDQLYERQSE----LKSLLEAFEASRGSPIQYGGSSSTAVENWSGTFEWDSRADDVRLNVFGI 89 (692)
Q Consensus 14 ~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~~~~~~~~~~~~l~~~fg~ 89 (692)
...+..+++....+..++++++.+... ....+..++.........|.+.|.|+.+|. ..++++.+.+.|.+ .||
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~p~p~~~f~-~~~l~~~l~~~l~~-~g~ 150 (545)
T PTZ00110 73 GKRLQPIDWKSINLVPFEKNFYKEHPEVSALSSKEVDEIRKEKEITIIAGENVPKPVVSFE-YTSFPDYILKSLKN-AGF 150 (545)
T ss_pred ccccCCCCCccccccchhhhcccCChhhhcCCHHHHHHHHHhcCcEEecCCCCCcccCCHh-hcCCCHHHHHHHHH-CCC
Confidence 334555666666677888888766554 333345555443434346888999999999 46788899999985 599
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc-----------CCeEEEEcccHHHHHHHHHHHHHc----
Q 035988 90 PAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR-----------EGIALVVSPLLSLIQDQVMCLAAL---- 154 (692)
Q Consensus 90 ~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~-----------~~~~lvi~Pt~~L~~q~~~~l~~~---- 154 (692)
..|+|+|.++||.+++|+|+|++||||||||++|++|++.+ ++.+|||+||++|+.|+.+.++++
T Consensus 151 ~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~ 230 (545)
T PTZ00110 151 TEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASS 230 (545)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999753 367999999999999999999987
Q ss_pred CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHH
Q 035988 155 GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPD 234 (692)
Q Consensus 155 gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~ 234 (692)
++++..+.++.....+.. .+.. .++|+|+||++|.+ ++. .....+.++++|||||||++.+|| |.+.
T Consensus 231 ~i~~~~~~gg~~~~~q~~---~l~~---~~~IlVaTPgrL~d---~l~--~~~~~l~~v~~lViDEAd~mld~g--f~~~ 297 (545)
T PTZ00110 231 KIRNTVAYGGVPKRGQIY---ALRR---GVEILIACPGRLID---FLE--SNVTNLRRVTYLVLDEADRMLDMG--FEPQ 297 (545)
T ss_pred CccEEEEeCCCCHHHHHH---HHHc---CCCEEEECHHHHHH---HHH--cCCCChhhCcEEEeehHHhhhhcc--hHHH
Confidence 467777888776554332 2322 68999999997753 221 233456789999999999999999 9888
Q ss_pred HHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEeccCC---CCcceEEEeeccCcchHHHHHHHHHHHHh
Q 035988 235 YKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTIN---RPNLFYMVREKSSVGKVVIDEIAKYIQES 311 (692)
Q Consensus 235 ~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~---r~~l~~~v~~~~~~~~~~~~~l~~~l~~~ 311 (692)
+.. .+....++.+++++|||++..+......++............. ..++...+.... ...+...+..++...
T Consensus 298 i~~--il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~--~~~k~~~L~~ll~~~ 373 (545)
T PTZ00110 298 IRK--IVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVE--EHEKRGKLKMLLQRI 373 (545)
T ss_pred HHH--HHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEe--chhHHHHHHHHHHHh
Confidence 877 3445567889999999999887776666554322222222211 122322222111 123445566666655
Q ss_pred CCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEEeC
Q 035988 312 YPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHS 391 (692)
Q Consensus 312 ~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~ 391 (692)
...+.++||||+|++.|+.++..|+..|+++..+||++++++|..+++.|++|+.+|||||+++++|||+|+|++|||||
T Consensus 374 ~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d 453 (545)
T PTZ00110 374 MRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFD 453 (545)
T ss_pred cccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeC
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHHHHHHHHhhhh----hhhHhHHHHHHHhcCCccchH
Q 035988 392 LSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFYEN----SGLQNLYDIVRYSQYPLHWNI 456 (692)
Q Consensus 392 ~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~~~~l~~~~~----~~~~~l~~~~~~~~~~~~crr 456 (692)
+|.++++|+||+||+||.|..|.|++|+++.|......++..-. .-...|..|.....+...|++
T Consensus 454 ~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~vp~~l~~~~~~~~~~~~~~~ 522 (545)
T PTZ00110 454 FPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLREAKQPVPPELEKLSNERSNGTERRR 522 (545)
T ss_pred CCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHHccCCCCHHHHHHHHHhcCCccccc
Confidence 99999999999999999999999999999999877776655322 123445566555554445653
No 10
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-56 Score=479.23 Aligned_cols=344 Identities=23% Similarity=0.350 Sum_probs=284.4
Q ss_pred CCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc------------CCeEEEEcc
Q 035988 72 TFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR------------EGIALVVSP 139 (692)
Q Consensus 72 ~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~------------~~~~lvi~P 139 (692)
.++++++....++.. ||+.|+|+|.+.||.++.|+|++.+|.|||||||+|++|++.+ ++++||++|
T Consensus 95 ~~~ls~~~~~~lk~~-g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~P 173 (519)
T KOG0331|consen 95 ELGLSEELMKALKEQ-GFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAP 173 (519)
T ss_pred cccccHHHHHHHHhc-CCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcC
Confidence 345666777777754 9999999999999999999999999999999999999999853 478999999
Q ss_pred cHHHHHHHHHHHHHc----CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHH-hhhhcCCce
Q 035988 140 LLSLIQDQVMCLAAL----GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLE-KCHHAGRLS 214 (692)
Q Consensus 140 t~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~-~~~~~~~l~ 214 (692)
||+|+.|+.+.+.++ +++..+++|+.+...+...+ .. +++|+|+||+++. ++++ ....+.++.
T Consensus 174 TRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l---~~---gvdiviaTPGRl~------d~le~g~~~l~~v~ 241 (519)
T KOG0331|consen 174 TRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDL---ER---GVDVVIATPGRLI------DLLEEGSLNLSRVT 241 (519)
T ss_pred cHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHH---hc---CCcEEEeCChHHH------HHHHcCCcccccee
Confidence 999999999999987 46688999998877654333 33 6999999999664 4444 455778999
Q ss_pred EEEEeCcccccccCCCchHHHHHHHHHHhh-CCCCCEEEEecccchhhHHHHHHHhcccceEEEeccC---CCCcceEEE
Q 035988 215 LISIDEAHCCSQWGHDFRPDYKNLGILKTQ-FPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTI---NRPNLFYMV 290 (692)
Q Consensus 215 ~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~-~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~---~r~~l~~~v 290 (692)
++|+||||+|+++| |+++++. .+.+. .|..|++++|||++..+......+|+.+..+.+.... ...++...+
T Consensus 242 ylVLDEADrMldmG--Fe~qI~~--Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qiv 317 (519)
T KOG0331|consen 242 YLVLDEADRMLDMG--FEPQIRK--ILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIV 317 (519)
T ss_pred EEEeccHHhhhccc--cHHHHHH--HHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhh
Confidence 99999999999999 9999998 67777 4566899999999999999999999944443333221 112222111
Q ss_pred eeccCcchHHHHHHHHHHHHhC-CCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEE
Q 035988 291 REKSSVGKVVIDEIAKYIQESY-PNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVI 369 (692)
Q Consensus 291 ~~~~~~~~~~~~~l~~~l~~~~-~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~IL 369 (692)
. ... ...+...|..+|.... ..++++||||+|++.|++|+..|+..++++..+||+.++.+|..+++.|++|+..||
T Consensus 318 e-~~~-~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vL 395 (519)
T KOG0331|consen 318 E-VCD-ETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVL 395 (519)
T ss_pred h-hcC-HHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceE
Confidence 1 111 2233344444444432 367899999999999999999999999999999999999999999999999999999
Q ss_pred EeccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHHHHHHHHhhh
Q 035988 370 VGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFYE 434 (692)
Q Consensus 370 VaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~~~~l~~~~ 434 (692)
|||+++++|+|+|+|++||+||+|.++++|+||+||+||.|+.|.+++|++..+....+.++...
T Consensus 396 VATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l 460 (519)
T KOG0331|consen 396 VATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVL 460 (519)
T ss_pred EEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988777776543
No 11
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=5e-54 Score=446.40 Aligned_cols=355 Identities=21% Similarity=0.306 Sum_probs=296.7
Q ss_pred CCCCccCCCCCccccccccCCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc--
Q 035988 53 GSPIQYGGSSSTAVENWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR-- 130 (692)
Q Consensus 53 ~~~~~~g~~~~~~~~~w~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~-- 130 (692)
-++..+|+..|.|+.+|.+ .+++.+++.++.+ .||..|+|+|+++||..++.+|+|.+|.||||||++|++|.+..
T Consensus 231 ynis~kg~~lpnplrnwEE-~~~P~e~l~~I~~-~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~Is 308 (673)
T KOG0333|consen 231 YNISIKGGRLPNPLRNWEE-SGFPLELLSVIKK-PGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWIS 308 (673)
T ss_pred eeeeecCCCCCccccChhh-cCCCHHHHHHHHh-cCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHH
Confidence 4467789999999999995 5588889998876 59999999999999999999999999999999999999988732
Q ss_pred -------------CCeEEEEcccHHHHHHHHHHHHHc----CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhh
Q 035988 131 -------------EGIALVVSPLLSLIQDQVMCLAAL----GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEK 193 (692)
Q Consensus 131 -------------~~~~lvi~Pt~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~ 193 (692)
++.++|+.|||+|++|+.++-.++ |+++..+.|+.+.+++...+.. +|+|+|+||++
T Consensus 309 slP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~------gceiviatPgr 382 (673)
T KOG0333|consen 309 SLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSM------GCEIVIATPGR 382 (673)
T ss_pred cCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhc------cceeeecCchH
Confidence 589999999999999999988876 7889999999998876544432 79999999998
Q ss_pred hhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHHHHhh---------------------CC--C--C
Q 035988 194 ISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQ---------------------FP--D--V 248 (692)
Q Consensus 194 l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~---------------------~~--~--~ 248 (692)
|.+... ...+.++++.+||+|||++|.++| |.+++..+ |... |. . .
T Consensus 383 Lid~Le-----nr~lvl~qctyvvldeadrmiDmg--fE~dv~~i--L~~mPssn~k~~tde~~~~~~~~~~~~~~k~yr 453 (673)
T KOG0333|consen 383 LIDSLE-----NRYLVLNQCTYVVLDEADRMIDMG--FEPDVQKI--LEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYR 453 (673)
T ss_pred HHHHHH-----HHHHHhccCceEeccchhhhhccc--ccHHHHHH--HHhCCccccCCCccchhhHHHHHhhccccccee
Confidence 765311 233456789999999999999999 99998773 2221 11 1 5
Q ss_pred CEEEEecccchhhHHHHHHHhcccceEEEeccCCCCc--ceEEEeeccCcchHHHHHHHHHHHHhCCCCCceEEEEeccc
Q 035988 249 PMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPN--LFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRK 326 (692)
Q Consensus 249 ~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~--l~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~ 326 (692)
+.++||||+++.+......+|.-+..+.+. +..++. +...+.... .......|..++... ...++|||+|+++
T Consensus 454 qT~mftatm~p~verlar~ylr~pv~vtig-~~gk~~~rveQ~v~m~~--ed~k~kkL~eil~~~--~~ppiIIFvN~kk 528 (673)
T KOG0333|consen 454 QTVMFTATMPPAVERLARSYLRRPVVVTIG-SAGKPTPRVEQKVEMVS--EDEKRKKLIEILESN--FDPPIIIFVNTKK 528 (673)
T ss_pred EEEEEecCCChHHHHHHHHHhhCCeEEEec-cCCCCccchheEEEEec--chHHHHHHHHHHHhC--CCCCEEEEEechh
Confidence 679999999999998888888766555443 333322 222222221 233477888888876 6789999999999
Q ss_pred hHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEEeCCCCCHHHHHHHHhhc
Q 035988 327 ECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRA 406 (692)
Q Consensus 327 ~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRa 406 (692)
.|+.|++.|.+.|+.+..|||+-++++|+..++.|++|..+|||||+++++|||+|||.+||+||+++|+++|.||+||+
T Consensus 529 ~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRT 608 (673)
T KOG0333|consen 529 GADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRT 608 (673)
T ss_pred hHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCeeEeecCCCCHHHHHH
Q 035988 407 GRDGLPSECLLFFRPADVPRQSS 429 (692)
Q Consensus 407 gR~G~~g~~i~l~~~~d~~~~~~ 429 (692)
||+|+.|.++.|+++.|......
T Consensus 609 gRAGk~GtaiSflt~~dt~v~yd 631 (673)
T KOG0333|consen 609 GRAGKSGTAISFLTPADTAVFYD 631 (673)
T ss_pred cccccCceeEEEeccchhHHHHH
Confidence 99999999999999999654433
No 12
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=8.1e-53 Score=473.47 Aligned_cols=366 Identities=19% Similarity=0.260 Sum_probs=287.2
Q ss_pred HHHHHHhccCCCCccCCCCCccccccccCCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHH
Q 035988 44 LLEAFEASRGSPIQYGGSSSTAVENWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCY 123 (692)
Q Consensus 44 ~~~~~~~~~~~~~~~g~~~~~~~~~w~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~ 123 (692)
.++.++.. .++...|...|.|+.+|. .+++++.+.+.|.+ .||..|+|+|.++|+.+++|+|++++||||||||++|
T Consensus 99 ~~~~~r~~-~~i~~~g~~~p~pi~~f~-~~~l~~~l~~~L~~-~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlay 175 (518)
T PLN00206 99 QAELLRRK-LEIHVKGEAVPPPILSFS-SCGLPPKLLLNLET-AGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASF 175 (518)
T ss_pred HHHHHHHH-CCCEecCCCCCchhcCHH-hCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHH
Confidence 34444544 445667889999999999 56788999999985 6999999999999999999999999999999999999
Q ss_pred HHHHHhc-------------CCeEEEEcccHHHHHHHHHHHHHc----CCCEEEEecCCChhHHHHHHHHHHhcCCCccE
Q 035988 124 QLPAVLR-------------EGIALVVSPLLSLIQDQVMCLAAL----GIPAHMLTSTTSKEDEKFIYKALEKGEGELKM 186 (692)
Q Consensus 124 ~lpal~~-------------~~~~lvi~Pt~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I 186 (692)
++|++.+ ++.+||++||++|+.|+.+.++.+ ++++..+.|+....... ..+. .+++|
T Consensus 176 llPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~---~~l~---~~~~I 249 (518)
T PLN00206 176 LVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQL---YRIQ---QGVEL 249 (518)
T ss_pred HHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHH---HHhc---CCCCE
Confidence 9998742 468999999999999998888765 45666677665544322 2222 26899
Q ss_pred EEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHH
Q 035988 187 LYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLM 266 (692)
Q Consensus 187 li~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~ 266 (692)
+|+||++|.. ++. .....+.++.+|||||||++.+|| |++.+.. +....++.++++||||+++.+.....
T Consensus 250 iV~TPgrL~~---~l~--~~~~~l~~v~~lViDEad~ml~~g--f~~~i~~---i~~~l~~~q~l~~SATl~~~v~~l~~ 319 (518)
T PLN00206 250 IVGTPGRLID---LLS--KHDIELDNVSVLVLDEVDCMLERG--FRDQVMQ---IFQALSQPQVLLFSATVSPEVEKFAS 319 (518)
T ss_pred EEECHHHHHH---HHH--cCCccchheeEEEeecHHHHhhcc--hHHHHHH---HHHhCCCCcEEEEEeeCCHHHHHHHH
Confidence 9999998753 211 224467889999999999999999 8887765 34455788999999999988766555
Q ss_pred HHhcccceEEEeccCCCCcce--EEEeeccCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHH-CCCcee
Q 035988 267 EMLHIRKCIKFVSTINRPNLF--YMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQ-RGISAD 343 (692)
Q Consensus 267 ~~l~~~~~~~~~~~~~r~~l~--~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~-~g~~v~ 343 (692)
..+... ..+......+++.. ..+.... .......+.+++........++||||+|+..++.++..|.. .|+.+.
T Consensus 320 ~~~~~~-~~i~~~~~~~~~~~v~q~~~~~~--~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~ 396 (518)
T PLN00206 320 SLAKDI-ILISIGNPNRPNKAVKQLAIWVE--TKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKAL 396 (518)
T ss_pred HhCCCC-EEEEeCCCCCCCcceeEEEEecc--chhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceE
Confidence 444322 22222222333221 1111111 12334556666654433456899999999999999999975 599999
Q ss_pred EeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCC
Q 035988 344 YYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPAD 423 (692)
Q Consensus 344 ~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d 423 (692)
.+||+|+.++|..+++.|++|+++|||||+++++|||+|++++||+||+|.++++|+||+|||||.|..|.+++|++..|
T Consensus 397 ~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~ 476 (518)
T PLN00206 397 SIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEED 476 (518)
T ss_pred EeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHHHHHHH
Q 035988 424 VPRQSSMV 431 (692)
Q Consensus 424 ~~~~~~l~ 431 (692)
......++
T Consensus 477 ~~~~~~l~ 484 (518)
T PLN00206 477 RNLFPELV 484 (518)
T ss_pred HHHHHHHH
Confidence 66555544
No 13
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-53 Score=427.68 Aligned_cols=395 Identities=16% Similarity=0.277 Sum_probs=324.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhccCCCCc------cCCCCCccccccccCCCCcHHHHHHHHHh
Q 035988 17 VRLVQEQIKQLVDRQDQLYERQSE----LKSLLEAFEASRGSPIQ------YGGSSSTAVENWSGTFEWDSRADDVRLNV 86 (692)
Q Consensus 17 l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~------~g~~~~~~~~~w~~~~~~~~~~~~~l~~~ 86 (692)
|+.-....-++....++||.+..+ .+..+.+++....++.. .....|.|.-.|.+.|.-.+++++.+++.
T Consensus 159 l~~e~~kW~~lpPi~knfYke~~e~s~ls~~q~~~~r~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~ 238 (629)
T KOG0336|consen 159 LKDEKFKWAKLPPIKKNFYKESNETSNLSKEQLQEWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKT 238 (629)
T ss_pred hhhhhcccccCCchhhhhhhcCchhccCCHHHHHHHHHcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhc
Confidence 333344445566788889877766 44446666665444322 22356888888888999999999999975
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc------------CCeEEEEcccHHHHHHHHHHHHHc
Q 035988 87 FGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR------------EGIALVVSPLLSLIQDQVMCLAAL 154 (692)
Q Consensus 87 fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~------------~~~~lvi~Pt~~L~~q~~~~l~~~ 154 (692)
||.+|+|+|++|||.+|+|.|++.+|.||+|||++|++|.+.+ ++.+||++||++|+.|+.-+..++
T Consensus 239 -GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~ky 317 (629)
T KOG0336|consen 239 -GFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKY 317 (629)
T ss_pred -cCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHh
Confidence 9999999999999999999999999999999999999998854 468999999999999999888876
Q ss_pred ---CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCc
Q 035988 155 ---GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDF 231 (692)
Q Consensus 155 ---gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~f 231 (692)
|.+..++.|+....++... +.. +.+|+++||++|.+. + +.+..++..+.++|+||||+|+++| |
T Consensus 318 syng~ksvc~ygggnR~eqie~---lkr---gveiiiatPgrlndL--~---~~n~i~l~siTYlVlDEADrMLDMg--F 384 (629)
T KOG0336|consen 318 SYNGLKSVCVYGGGNRNEQIED---LKR---GVEIIIATPGRLNDL--Q---MDNVINLASITYLVLDEADRMLDMG--F 384 (629)
T ss_pred hhcCcceEEEecCCCchhHHHH---Hhc---CceEEeeCCchHhhh--h---hcCeeeeeeeEEEEecchhhhhccc--c
Confidence 7888888888776655433 332 799999999988642 2 2456678899999999999999999 9
Q ss_pred hHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEeccCCCC-----cceEEEeeccCcchHHHHHHHH
Q 035988 232 RPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRP-----NLFYMVREKSSVGKVVIDEIAK 306 (692)
Q Consensus 232 r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~-----~l~~~v~~~~~~~~~~~~~l~~ 306 (692)
.|++++ .+....|++++++.|||+++.+......++..+..+ +..+.+-. ...+ ++.. ..+++..+..
T Consensus 385 EpqIrk--illdiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v-~vGsLdL~a~~sVkQ~i-~v~~---d~~k~~~~~~ 457 (629)
T KOG0336|consen 385 EPQIRK--ILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIV-YVGSLDLVAVKSVKQNI-IVTT---DSEKLEIVQF 457 (629)
T ss_pred cHHHHH--HhhhcCCcceeeeecccCchHHHHHHHHhhhCceEE-EecccceeeeeeeeeeE-Eecc---cHHHHHHHHH
Confidence 999998 889999999999999999999999988888765433 33333211 1111 2221 2344544444
Q ss_pred HHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccE
Q 035988 307 YIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRF 386 (692)
Q Consensus 307 ~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~ 386 (692)
++. ....+.++||||.++-.|+.|...|.-.|+.+..+||+-++.+|+..++.|++|+++|||||+++++|+|+||+.+
T Consensus 458 f~~-~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTH 536 (629)
T KOG0336|consen 458 FVA-NMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITH 536 (629)
T ss_pred HHH-hcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcce
Confidence 444 4558899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHHHHHHHHhh
Q 035988 387 VIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFY 433 (692)
Q Consensus 387 VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~~~~l~~~ 433 (692)
|++||+|.+++.|+||+||+||.|+.|.++.|++..|......++.-
T Consensus 537 V~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~I 583 (629)
T KOG0336|consen 537 VYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQI 583 (629)
T ss_pred eeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888877653
No 14
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.6e-52 Score=460.51 Aligned_cols=342 Identities=18% Similarity=0.268 Sum_probs=275.7
Q ss_pred cccccCCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc-------------CCe
Q 035988 67 ENWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR-------------EGI 133 (692)
Q Consensus 67 ~~w~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~-------------~~~ 133 (692)
.+|. .+++++.+.+.+.+ +||..|+|+|.++||.+++|+|++++||||||||++|++|++.. ++.
T Consensus 8 ~~f~-~~~l~~~l~~~l~~-~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~ 85 (423)
T PRK04837 8 QKFS-DFALHPQVVEALEK-KGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPR 85 (423)
T ss_pred CCHh-hCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCce
Confidence 3666 68899999999985 69999999999999999999999999999999999999998732 257
Q ss_pred EEEEcccHHHHHHHHHHHHHc----CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhh
Q 035988 134 ALVVSPLLSLIQDQVMCLAAL----GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHH 209 (692)
Q Consensus 134 ~lvi~Pt~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~ 209 (692)
+||++||++|+.|+++.+..+ |+++..+.|+........ .+. ..++|+|+||+++.. ++. .....
T Consensus 86 ~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~---~l~---~~~~IlV~TP~~l~~---~l~--~~~~~ 154 (423)
T PRK04837 86 ALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLK---VLE---SGVDILIGTTGRLID---YAK--QNHIN 154 (423)
T ss_pred EEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHH---Hhc---CCCCEEEECHHHHHH---HHH--cCCcc
Confidence 999999999999998887764 788888888766543322 222 268999999998753 211 23456
Q ss_pred cCCceEEEEeCcccccccCCCchHHHHHHHHHHhhCC---CCCEEEEecccchhhHHHHHHHhcccceEEEeccC-CCCc
Q 035988 210 AGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFP---DVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTI-NRPN 285 (692)
Q Consensus 210 ~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~---~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~-~r~~ 285 (692)
+.+++++||||||++++|| |...+.. +....| ..+.+++|||++..+.......+..+..+.+.... ...+
T Consensus 155 l~~v~~lViDEad~l~~~~--f~~~i~~---i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~ 229 (423)
T PRK04837 155 LGAIQVVVLDEADRMFDLG--FIKDIRW---LFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHR 229 (423)
T ss_pred cccccEEEEecHHHHhhcc--cHHHHHH---HHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCc
Confidence 7889999999999999998 7777655 333333 44578999999998888777777655444332211 1122
Q ss_pred ceEEEeeccCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCC
Q 035988 286 LFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNK 365 (692)
Q Consensus 286 l~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~ 365 (692)
+...... .....+...+..++... ...++||||+++..|+.++..|...|+++..+||+|++++|..+++.|++|+
T Consensus 230 i~~~~~~--~~~~~k~~~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~ 305 (423)
T PRK04837 230 IKEELFY--PSNEEKMRLLQTLIEEE--WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGD 305 (423)
T ss_pred eeEEEEe--CCHHHHHHHHHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCC
Confidence 2222221 12234566677777654 5789999999999999999999999999999999999999999999999999
Q ss_pred CcEEEeccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHHHHHHH
Q 035988 366 LQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSM 430 (692)
Q Consensus 366 ~~ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~~~~l 430 (692)
++|||||+++++|||+|++++|||||+|.+.++|+||+||+||.|+.|.|++|+++.|...+..+
T Consensus 306 ~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i 370 (423)
T PRK04837 306 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAI 370 (423)
T ss_pred CcEEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998776554443
No 15
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-52 Score=422.61 Aligned_cols=340 Identities=21% Similarity=0.267 Sum_probs=285.0
Q ss_pred ccccCCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc------CCeEEEEcccH
Q 035988 68 NWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR------EGIALVVSPLL 141 (692)
Q Consensus 68 ~w~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~------~~~~lvi~Pt~ 141 (692)
+|. .+++.+++.++..+. |+..|+++|+++||.++.|+|+|+.|.||||||.+|.+|++.+ ...++|++|||
T Consensus 62 sf~-dLgv~~~L~~ac~~l-~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtR 139 (476)
T KOG0330|consen 62 SFA-DLGVHPELLEACQEL-GWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTR 139 (476)
T ss_pred chh-hcCcCHHHHHHHHHh-CcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcH
Confidence 444 788999999999865 8999999999999999999999999999999999999999854 36899999999
Q ss_pred HHHHHHHHHHHHc----CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHH--hhhhcCCceE
Q 035988 142 SLIQDQVMCLAAL----GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLE--KCHHAGRLSL 215 (692)
Q Consensus 142 ~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~--~~~~~~~l~~ 215 (692)
+|+.|+.+.+..+ |++++.+.|+.+...+...+.. .++|+|+||++| ++++. +.+++..+.+
T Consensus 140 ELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~k------kPhilVaTPGrL------~dhl~~Tkgf~le~lk~ 207 (476)
T KOG0330|consen 140 ELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSK------KPHILVATPGRL------WDHLENTKGFSLEQLKF 207 (476)
T ss_pred HHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhc------CCCEEEeCcHHH------HHHHHhccCccHHHhHH
Confidence 9999999999887 7889999999887654433322 899999999955 45555 4567788999
Q ss_pred EEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEeccCC---CCcceEEEee
Q 035988 216 ISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTIN---RPNLFYMVRE 292 (692)
Q Consensus 216 iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~---r~~l~~~v~~ 292 (692)
+|+||||++++.. |.+.+.. .+....+.++.++||||++..+.......+..+..+.....+. .-...|....
T Consensus 208 LVlDEADrlLd~d--F~~~ld~--ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~ 283 (476)
T KOG0330|consen 208 LVLDEADRLLDMD--FEEELDY--ILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVP 283 (476)
T ss_pred HhhchHHhhhhhh--hHHHHHH--HHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEecc
Confidence 9999999999866 9888887 5666667899999999999998877655444433332222111 1122344433
Q ss_pred ccCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEec
Q 035988 293 KSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGT 372 (692)
Q Consensus 293 ~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT 372 (692)
...+ -..|+.++++. .+.+.||||++...++.++-.|+..|+.+..+||.|++..|.-.++.|++|...|||||
T Consensus 284 ~k~K----~~yLV~ll~e~--~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~T 357 (476)
T KOG0330|consen 284 GKDK----DTYLVYLLNEL--AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCT 357 (476)
T ss_pred cccc----chhHHHHHHhh--cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEec
Confidence 3222 34567777766 77999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHHHHHHHH
Q 035988 373 VAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMV 431 (692)
Q Consensus 373 ~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~~~~l~ 431 (692)
++++||+|+|.|++|||||+|.+..+|+||+||+||.|..|.++.+++..|+..+.++.
T Consensus 358 DVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE 416 (476)
T KOG0330|consen 358 DVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIE 416 (476)
T ss_pred chhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998887766543
No 16
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3e-51 Score=457.88 Aligned_cols=343 Identities=22% Similarity=0.329 Sum_probs=285.3
Q ss_pred cccccCCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhcC-------Ce-EEEEc
Q 035988 67 ENWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLRE-------GI-ALVVS 138 (692)
Q Consensus 67 ~~w~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~~-------~~-~lvi~ 138 (692)
..|. .+++++.+.+.+.+ .||..|+|+|.++||.++.|+|+++.|+||||||++|.+|++.+- .. +||++
T Consensus 29 ~~F~-~l~l~~~ll~~l~~-~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~ 106 (513)
T COG0513 29 PEFA-SLGLSPELLQALKD-LGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILA 106 (513)
T ss_pred CCHh-hcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEEC
Confidence 3455 77899999999998 699999999999999999999999999999999999999998541 12 89999
Q ss_pred ccHHHHHHHHHHHHHc-----CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHh-hhhcCC
Q 035988 139 PLLSLIQDQVMCLAAL-----GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEK-CHHAGR 212 (692)
Q Consensus 139 Pt~~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~-~~~~~~ 212 (692)
|||+|+.|+.+.+..+ ++.+..+.|+.+...+... +.. +++|+|+||+++. +++.. ...+.+
T Consensus 107 PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~---l~~---~~~ivVaTPGRll------D~i~~~~l~l~~ 174 (513)
T COG0513 107 PTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEA---LKR---GVDIVVATPGRLL------DLIKRGKLDLSG 174 (513)
T ss_pred CCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHH---Hhc---CCCEEEECccHHH------HHHHcCCcchhh
Confidence 9999999999998875 4678899999887655433 332 4999999999765 44443 467789
Q ss_pred ceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEeccC---CCCcceEE
Q 035988 213 LSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTI---NRPNLFYM 289 (692)
Q Consensus 213 l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~---~r~~l~~~ 289 (692)
+.++|+||||+|.++| |.+++.. .+....++.++++||||++..+......++..+..+.+.... ..+++...
T Consensus 175 v~~lVlDEADrmLd~G--f~~~i~~--I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~ 250 (513)
T COG0513 175 VETLVLDEADRMLDMG--FIDDIEK--ILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQF 250 (513)
T ss_pred cCEEEeccHhhhhcCC--CHHHHHH--HHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEE
Confidence 9999999999999998 9999887 455555589999999999998888888888855544433111 22333333
Q ss_pred EeeccCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEE
Q 035988 290 VREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVI 369 (692)
Q Consensus 290 v~~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~IL 369 (692)
+...... ..+...|..++... ...++||||+|+..|+.++..|...|+++..+||+|++++|.++++.|++|+.+||
T Consensus 251 ~~~v~~~-~~k~~~L~~ll~~~--~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vL 327 (513)
T COG0513 251 YLEVESE-EEKLELLLKLLKDE--DEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVL 327 (513)
T ss_pred EEEeCCH-HHHHHHHHHHHhcC--CCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEE
Confidence 3322221 13677777877755 45579999999999999999999999999999999999999999999999999999
Q ss_pred EeccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCC-CHHHHHHH
Q 035988 370 VGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPA-DVPRQSSM 430 (692)
Q Consensus 370 VaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~-d~~~~~~l 430 (692)
|||++++||||+|+|++|||||+|.+.++|+||+||+||.|..|.++.|+++. |...+..+
T Consensus 328 VaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~i 389 (513)
T COG0513 328 VATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRI 389 (513)
T ss_pred EEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999985 65555444
No 17
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=3.4e-51 Score=456.40 Aligned_cols=341 Identities=22% Similarity=0.310 Sum_probs=279.9
Q ss_pred ccccCCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc------CCeEEEEcccH
Q 035988 68 NWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR------EGIALVVSPLL 141 (692)
Q Consensus 68 ~w~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~------~~~~lvi~Pt~ 141 (692)
+|. .+++++.+.+.|.+ +||..|+|+|.+||+.++.|+|++++||||||||++|++|++.. ...+||++||+
T Consensus 5 ~f~-~l~l~~~l~~~l~~-~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~Ptr 82 (460)
T PRK11776 5 AFS-TLPLPPALLANLNE-LGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTR 82 (460)
T ss_pred Chh-hcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCH
Confidence 455 67789999999985 69999999999999999999999999999999999999998854 24799999999
Q ss_pred HHHHHHHHHHHHc-----CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHH-hhhhcCCceE
Q 035988 142 SLIQDQVMCLAAL-----GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLE-KCHHAGRLSL 215 (692)
Q Consensus 142 ~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~-~~~~~~~l~~ 215 (692)
+|+.|+.+.++.+ ++++..++|+.+....... +. ..++|+|+||+++.. ++. ....+.++++
T Consensus 83 eLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~---l~---~~~~IvV~Tp~rl~~------~l~~~~~~l~~l~~ 150 (460)
T PRK11776 83 ELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDS---LE---HGAHIIVGTPGRILD------HLRKGTLDLDALNT 150 (460)
T ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHH---hc---CCCCEEEEChHHHHH------HHHcCCccHHHCCE
Confidence 9999999988865 5778888888876543322 22 278999999997753 222 3345678999
Q ss_pred EEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEeccCCCCcceEEEeeccC
Q 035988 216 ISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSS 295 (692)
Q Consensus 216 iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~~ 295 (692)
+||||||++.++| |...+.. .+....+..++++||||+++.+......++..+..+.+......+.+........
T Consensus 151 lViDEad~~l~~g--~~~~l~~--i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~- 225 (460)
T PRK11776 151 LVLDEADRMLDMG--FQDAIDA--IIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEVS- 225 (460)
T ss_pred EEEECHHHHhCcC--cHHHHHH--HHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEeC-
Confidence 9999999999998 8877765 3444555788999999999988777777666555444443333333332222222
Q ss_pred cchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEecccc
Q 035988 296 VGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAF 375 (692)
Q Consensus 296 ~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~ 375 (692)
...+.+.+..++... ...++||||+|++.++.+++.|...++.+..+||+|++.+|..+++.|++|+++|||||+++
T Consensus 226 -~~~k~~~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~ 302 (460)
T PRK11776 226 -PDERLPALQRLLLHH--QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVA 302 (460)
T ss_pred -cHHHHHHHHHHHHhc--CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEeccc
Confidence 223566777777654 56789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHHHHHHH
Q 035988 376 GMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSM 430 (692)
Q Consensus 376 ~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~~~~l 430 (692)
++|||+|++++||+||+|.+.++|+||+||+||.|..|.|++|+++.|...+..+
T Consensus 303 ~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i 357 (460)
T PRK11776 303 ARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAI 357 (460)
T ss_pred ccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999876554443
No 18
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=5.2e-51 Score=453.28 Aligned_cols=340 Identities=19% Similarity=0.267 Sum_probs=271.9
Q ss_pred cccCCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc------------CCeEEE
Q 035988 69 WSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR------------EGIALV 136 (692)
Q Consensus 69 w~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~------------~~~~lv 136 (692)
|. .+++++.+.+.|.+ +||..|+|+|.++|+.++.|+|++++||||||||++|++|++.. ..++||
T Consensus 3 f~-~l~l~~~l~~~l~~-~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLi 80 (456)
T PRK10590 3 FD-SLGLSPDILRAVAE-QGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALI 80 (456)
T ss_pred HH-HcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEE
Confidence 44 67789999999986 69999999999999999999999999999999999999998743 137999
Q ss_pred EcccHHHHHHHHHHHHHc----CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCC
Q 035988 137 VSPLLSLIQDQVMCLAAL----GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGR 212 (692)
Q Consensus 137 i~Pt~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~ 212 (692)
|+||++|+.|+.+.++.+ ++.+..+.|+........ .+. +.++|+|+||++|.... ......+.+
T Consensus 81 l~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~---~~~~IiV~TP~rL~~~~-----~~~~~~l~~ 149 (456)
T PRK10590 81 LTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM---KLR---GGVDVLVATPGRLLDLE-----HQNAVKLDQ 149 (456)
T ss_pred EeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHH---HHc---CCCcEEEEChHHHHHHH-----HcCCccccc
Confidence 999999999999998875 577778888876554322 221 27899999999875321 123345788
Q ss_pred ceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEec-cCCCCcceEEEe
Q 035988 213 LSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVS-TINRPNLFYMVR 291 (692)
Q Consensus 213 l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~r~~l~~~v~ 291 (692)
+++|||||||++++|+ |...+.. .+....+..++++||||++..+......++..+..+.+.. ....+++...+.
T Consensus 150 v~~lViDEah~ll~~~--~~~~i~~--il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~ 225 (456)
T PRK10590 150 VEILVLDEADRMLDMG--FIHDIRR--VLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVH 225 (456)
T ss_pred ceEEEeecHHHHhccc--cHHHHHH--HHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEE
Confidence 9999999999999998 7666665 3333445678999999999988777777766554443322 122233322222
Q ss_pred eccCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEe
Q 035988 292 EKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVG 371 (692)
Q Consensus 292 ~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVa 371 (692)
... .......+..++... ...++||||+++..++.+++.|...++.+..+||+|++++|..+++.|++|+++||||
T Consensus 226 ~~~--~~~k~~~l~~l~~~~--~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVa 301 (456)
T PRK10590 226 FVD--KKRKRELLSQMIGKG--NWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVA 301 (456)
T ss_pred EcC--HHHHHHHHHHHHHcC--CCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEE
Confidence 221 122333444444433 5679999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHHHHHH
Q 035988 372 TVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSS 429 (692)
Q Consensus 372 T~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~~~~ 429 (692)
|+++++|||+|+|++||||++|.++++|+||+||+||.|..|.|++|+...|...+..
T Consensus 302 Tdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ 359 (456)
T PRK10590 302 TDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRD 359 (456)
T ss_pred ccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999877655444
No 19
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1e-50 Score=459.20 Aligned_cols=342 Identities=18% Similarity=0.244 Sum_probs=276.5
Q ss_pred ccccCCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc-------------CCeE
Q 035988 68 NWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR-------------EGIA 134 (692)
Q Consensus 68 ~w~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~-------------~~~~ 134 (692)
+|. .+++++.+.+.|.+ +||..|+|+|.++||.+++|+|++++||||||||++|++|++.. .+++
T Consensus 10 ~f~-~l~l~~~l~~~L~~-~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~ra 87 (572)
T PRK04537 10 TFS-SFDLHPALLAGLES-AGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRA 87 (572)
T ss_pred Chh-hcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 466 77899999999985 69999999999999999999999999999999999999998752 2589
Q ss_pred EEEcccHHHHHHHHHHHHHc----CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhc
Q 035988 135 LVVSPLLSLIQDQVMCLAAL----GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHA 210 (692)
Q Consensus 135 lvi~Pt~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~ 210 (692)
|||+||++|+.|+++.+..+ ++++..++|+.........+. . .++|+|+||++|... +.. .....+
T Consensus 88 LIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~----~--~~dIiV~TP~rL~~~---l~~-~~~~~l 157 (572)
T PRK04537 88 LILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQ----Q--GVDVIIATPGRLIDY---VKQ-HKVVSL 157 (572)
T ss_pred EEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHh----C--CCCEEEECHHHHHHH---HHh-ccccch
Confidence 99999999999999998876 677888898877654433322 2 689999999987531 111 112356
Q ss_pred CCceEEEEeCcccccccCCCchHHHHHHHHHHhhCC---CCCEEEEecccchhhHHHHHHHhcccceEEEecc-CCCCcc
Q 035988 211 GRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFP---DVPMMALTATATQKVQNDLMEMLHIRKCIKFVST-INRPNL 286 (692)
Q Consensus 211 ~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~---~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~-~~r~~l 286 (692)
..+++|||||||++.++| |...+..+ ...+| +.++++||||++..+.......+..+..+.+... ....++
T Consensus 158 ~~v~~lViDEAh~lld~g--f~~~i~~i---l~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i 232 (572)
T PRK04537 158 HACEICVLDEADRMFDLG--FIKDIRFL---LRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARV 232 (572)
T ss_pred hheeeeEecCHHHHhhcc--hHHHHHHH---HHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccce
Confidence 788999999999999998 77766553 33333 6789999999999888887777765543333221 112222
Q ss_pred eEEEeeccCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCC
Q 035988 287 FYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKL 366 (692)
Q Consensus 287 ~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~ 366 (692)
...+... ....+...+..++... .+.++||||+|+..|+.+++.|...++.+..+||+|++.+|..+++.|++|++
T Consensus 233 ~q~~~~~--~~~~k~~~L~~ll~~~--~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~ 308 (572)
T PRK04537 233 RQRIYFP--ADEEKQTLLLGLLSRS--EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQL 308 (572)
T ss_pred eEEEEec--CHHHHHHHHHHHHhcc--cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 2222211 1234556677776644 67899999999999999999999999999999999999999999999999999
Q ss_pred cEEEeccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHHHHHHH
Q 035988 367 QVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSM 430 (692)
Q Consensus 367 ~ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~~~~l 430 (692)
+|||||+++++|||+|+|++|||||+|.++++|+||+||+||.|..|.|++|+++.+...+..+
T Consensus 309 ~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i 372 (572)
T PRK04537 309 EILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDI 372 (572)
T ss_pred eEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988776554443
No 20
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=2.9e-50 Score=446.04 Aligned_cols=341 Identities=21% Similarity=0.278 Sum_probs=272.3
Q ss_pred cccCCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc----------CCeEEEEc
Q 035988 69 WSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR----------EGIALVVS 138 (692)
Q Consensus 69 w~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~----------~~~~lvi~ 138 (692)
|. .+++++.+.+.+.+ .||..|+++|.++|++++.|+|++++||||+|||++|++|++.. .+++||++
T Consensus 3 f~-~l~l~~~l~~~l~~-~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~ 80 (434)
T PRK11192 3 FS-ELELDESLLEALQD-KGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILT 80 (434)
T ss_pred Hh-hcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEEC
Confidence 44 67889999999986 59999999999999999999999999999999999999999853 25899999
Q ss_pred ccHHHHHHHHHHHHHc----CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCce
Q 035988 139 PLLSLIQDQVMCLAAL----GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLS 214 (692)
Q Consensus 139 Pt~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~ 214 (692)
||++|+.|+.+.+..+ ++++..++|+.........+. ..++|+|+||++|.. ++. ...+.+.+++
T Consensus 81 Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~------~~~~IlV~Tp~rl~~---~~~--~~~~~~~~v~ 149 (434)
T PRK11192 81 PTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFS------ENQDIVVATPGRLLQ---YIK--EENFDCRAVE 149 (434)
T ss_pred CcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhc------CCCCEEEEChHHHHH---HHH--cCCcCcccCC
Confidence 9999999999887765 788889999887665433322 278999999997753 111 2334567899
Q ss_pred EEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEecc--CCCCcceEEEee
Q 035988 215 LISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVST--INRPNLFYMVRE 292 (692)
Q Consensus 215 ~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~--~~r~~l~~~v~~ 292 (692)
+|||||||++.+|| |...+..+ ........++++||||++......+...+..........+ ..+.++......
T Consensus 150 ~lViDEah~~l~~~--~~~~~~~i--~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~ 225 (434)
T PRK11192 150 TLILDEADRMLDMG--FAQDIETI--AAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYR 225 (434)
T ss_pred EEEEECHHHHhCCC--cHHHHHHH--HHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEE
Confidence 99999999999999 88887763 3333446788999999987655566555433322221121 122333322222
Q ss_pred ccCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEec
Q 035988 293 KSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGT 372 (692)
Q Consensus 293 ~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT 372 (692)
.. ....+...+..++... ...++||||++++.++.++..|+..|+.+..+||+|++.+|..+++.|++|+++|||||
T Consensus 226 ~~-~~~~k~~~l~~l~~~~--~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaT 302 (434)
T PRK11192 226 AD-DLEHKTALLCHLLKQP--EVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVAT 302 (434)
T ss_pred eC-CHHHHHHHHHHHHhcC--CCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEc
Confidence 21 1234455666666543 56899999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHHHHHH
Q 035988 373 VAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSS 429 (692)
Q Consensus 373 ~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~~~~ 429 (692)
+++++|||+|++++|||||+|.|.+.|+||+||+||+|..|.+++|++..|...+..
T Consensus 303 d~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~ 359 (434)
T PRK11192 303 DVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGK 359 (434)
T ss_pred cccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998777654433
No 21
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.4e-49 Score=444.58 Aligned_cols=339 Identities=20% Similarity=0.285 Sum_probs=271.2
Q ss_pred CCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc-------------CCeEEEEc
Q 035988 72 TFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR-------------EGIALVVS 138 (692)
Q Consensus 72 ~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~-------------~~~~lvi~ 138 (692)
.+.+++.+.+.|.+ +||..|+|+|.++|+.+++|+|+++.+|||||||++|++|++.. .+++|||+
T Consensus 91 ~~~l~~~l~~~l~~-~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~ 169 (475)
T PRK01297 91 DFNLAPELMHAIHD-LGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIA 169 (475)
T ss_pred HCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEe
Confidence 56788999999986 79999999999999999999999999999999999999998743 35899999
Q ss_pred ccHHHHHHHHHHHHHc----CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCce
Q 035988 139 PLLSLIQDQVMCLAAL----GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLS 214 (692)
Q Consensus 139 Pt~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~ 214 (692)
||++|+.|+.+.++.+ |+.+..++|+....... ..+... .++|+|+||++|.. +.. .....+.+++
T Consensus 170 PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~---~~~~~~--~~~Iiv~TP~~Ll~---~~~--~~~~~l~~l~ 239 (475)
T PRK01297 170 PTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQL---KQLEAR--FCDILVATPGRLLD---FNQ--RGEVHLDMVE 239 (475)
T ss_pred CcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHH---HHHhCC--CCCEEEECHHHHHH---HHH--cCCcccccCc
Confidence 9999999999998875 67788888876654332 223333 68999999998853 211 2234567899
Q ss_pred EEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEecc-CCCCcceEEEeec
Q 035988 215 LISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVST-INRPNLFYMVREK 293 (692)
Q Consensus 215 ~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~-~~r~~l~~~v~~~ 293 (692)
+|||||||++.+++ |.+.+..+........+.+++++|||++..+......++..+..+.+... ...+++...+...
T Consensus 240 ~lViDEah~l~~~~--~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 317 (475)
T PRK01297 240 VMVLDEADRMLDMG--FIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAV 317 (475)
T ss_pred eEEechHHHHHhcc--cHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEe
Confidence 99999999999988 87777664332222235689999999998888777776655433322221 1122222222221
Q ss_pred cCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEecc
Q 035988 294 SSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTV 373 (692)
Q Consensus 294 ~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~ 373 (692)
. ...+...+..++... ...++||||++++.++.+++.|...|+.+..+||+++.++|..+++.|++|+++|||||+
T Consensus 318 ~--~~~k~~~l~~ll~~~--~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~ 393 (475)
T PRK01297 318 A--GSDKYKLLYNLVTQN--PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATD 393 (475)
T ss_pred c--chhHHHHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEcc
Confidence 1 123445566666544 567999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHHHH
Q 035988 374 AFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQ 427 (692)
Q Consensus 374 ~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~~ 427 (692)
++++|||+|++++||+|++|.|+.+|+||+||+||.|..|.+++|++..|...+
T Consensus 394 ~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~ 447 (475)
T PRK01297 394 VAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQL 447 (475)
T ss_pred ccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHH
Confidence 999999999999999999999999999999999999999999999988765443
No 22
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.6e-51 Score=422.02 Aligned_cols=343 Identities=18% Similarity=0.254 Sum_probs=284.3
Q ss_pred CCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc---------CCeEEEEcccHH
Q 035988 72 TFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR---------EGIALVVSPLLS 142 (692)
Q Consensus 72 ~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~---------~~~~lvi~Pt~~ 142 (692)
...++..+++.+.. +||..|+|+|..+||..+.|+|++.+|.||||||.+|++|+|.+ ..++||++|||+
T Consensus 185 ~mNLSRPlLka~~~-lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRE 263 (691)
T KOG0338|consen 185 SMNLSRPLLKACST-LGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRE 263 (691)
T ss_pred hcccchHHHHHHHh-cCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHH
Confidence 67788888988884 69999999999999999999999999999999999999999854 248999999999
Q ss_pred HHHHHHHHHHHc----CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHh--hhhcCCceEE
Q 035988 143 LIQDQVMCLAAL----GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEK--CHHAGRLSLI 216 (692)
Q Consensus 143 L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~--~~~~~~l~~i 216 (692)
|+-|.+...+++ .|.++...|+++...+...++. .+||+|+||+ +|++++.+ .+++.++..+
T Consensus 264 LaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs------~PDIVIATPG------RlIDHlrNs~sf~ldsiEVL 331 (691)
T KOG0338|consen 264 LAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRS------RPDIVIATPG------RLIDHLRNSPSFNLDSIEVL 331 (691)
T ss_pred HHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhh------CCCEEEecch------hHHHHhccCCCccccceeEE
Confidence 999998887765 7889999999998887776654 7999999999 55666665 3467889999
Q ss_pred EEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEeccCCC-CcceEEEeeccC
Q 035988 217 SIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINR-PNLFYMVREKSS 295 (692)
Q Consensus 217 VIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r-~~l~~~v~~~~~ 295 (692)
|+||||+|++-| |..++.. .++....++|.++||||++..+.+.+.-.|+-|..+.+..+... +.+...+.....
T Consensus 332 vlDEADRMLeeg--FademnE--ii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~ 407 (691)
T KOG0338|consen 332 VLDEADRMLEEG--FADEMNE--IIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRP 407 (691)
T ss_pred EechHHHHHHHH--HHHHHHH--HHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheecc
Confidence 999999999988 9998887 34444458899999999999988877665555544443333332 233222221111
Q ss_pred cchH-HHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccc
Q 035988 296 VGKV-VIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVA 374 (692)
Q Consensus 296 ~~~~-~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~ 374 (692)
..+. .-..+..++... ....+|||+.|.+.|..+.-.|--.|+++.-+||.+++++|.+.++.|++++++|||||++
T Consensus 408 ~re~dRea~l~~l~~rt--f~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDv 485 (691)
T KOG0338|consen 408 KREGDREAMLASLITRT--FQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDV 485 (691)
T ss_pred ccccccHHHHHHHHHHh--cccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEech
Confidence 1111 112344445444 4778999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHHHHHHHHhh
Q 035988 375 FGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFY 433 (692)
Q Consensus 375 ~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~~~~l~~~ 433 (692)
+++|+||++|..||||.+|.+++.|+||+||++|+|+.|.++.|+...|...++.++..
T Consensus 486 AsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 486 ASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred hhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999988777776654
No 23
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=2.2e-49 Score=450.86 Aligned_cols=341 Identities=19% Similarity=0.315 Sum_probs=277.1
Q ss_pred ccccCCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc------CCeEEEEcccH
Q 035988 68 NWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR------EGIALVVSPLL 141 (692)
Q Consensus 68 ~w~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~------~~~~lvi~Pt~ 141 (692)
+|. .+++++.+.+.|.+ +||..|+|+|.++|+.++.|+|+|++||||+|||++|++|++.. .+.+||++||+
T Consensus 7 ~f~-~l~L~~~ll~al~~-~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTr 84 (629)
T PRK11634 7 TFA-DLGLKAPILEALND-LGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTR 84 (629)
T ss_pred CHh-hcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcH
Confidence 455 67899999999985 69999999999999999999999999999999999999998742 45899999999
Q ss_pred HHHHHHHHHHHHc-----CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHH-hhhhcCCceE
Q 035988 142 SLIQDQVMCLAAL-----GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLE-KCHHAGRLSL 215 (692)
Q Consensus 142 ~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~-~~~~~~~l~~ 215 (692)
+|+.|+.+.+..+ ++.+..++|+....... ..+. ..++|+|+||+++.+ ++. ....+.++.+
T Consensus 85 eLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~---~~l~---~~~~IVVgTPgrl~d------~l~r~~l~l~~l~~ 152 (629)
T PRK11634 85 ELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL---RALR---QGPQIVVGTPGRLLD------HLKRGTLDLSKLSG 152 (629)
T ss_pred HHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHH---HHhc---CCCCEEEECHHHHHH------HHHcCCcchhhceE
Confidence 9999999888765 67888888887654332 2222 268999999997753 222 3445788999
Q ss_pred EEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEecc-CCCCcceEEEeecc
Q 035988 216 ISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVST-INRPNLFYMVREKS 294 (692)
Q Consensus 216 iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~-~~r~~l~~~v~~~~ 294 (692)
|||||||+++++| |..++.. .+....+..++++||||++..+......++..+..+.+... ...+++........
T Consensus 153 lVlDEAd~ml~~g--f~~di~~--Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~ 228 (629)
T PRK11634 153 LVLDEADEMLRMG--FIEDVET--IMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVW 228 (629)
T ss_pred EEeccHHHHhhcc--cHHHHHH--HHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEec
Confidence 9999999999999 7777655 34444457889999999999887777777665544433322 23344332222221
Q ss_pred CcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccc
Q 035988 295 SVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVA 374 (692)
Q Consensus 295 ~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~ 374 (692)
...+.+.+..++... ...++||||+|+..++.+++.|...|+.+..+||+|++.+|..+++.|++|+++|||||++
T Consensus 229 --~~~k~~~L~~~L~~~--~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv 304 (629)
T PRK11634 229 --GMRKNEALVRFLEAE--DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 (629)
T ss_pred --hhhHHHHHHHHHHhc--CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcch
Confidence 224456677777654 5678999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHHHHHHH
Q 035988 375 FGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSM 430 (692)
Q Consensus 375 ~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~~~~l 430 (692)
+++|||+|+|++|||||+|.++++|+||+|||||.|+.|.|++|+++.|...++.+
T Consensus 305 ~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~i 360 (629)
T PRK11634 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 (629)
T ss_pred HhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998776555544
No 24
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.1e-49 Score=405.07 Aligned_cols=345 Identities=19% Similarity=0.246 Sum_probs=282.2
Q ss_pred cccc-CCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc---------CC--eEE
Q 035988 68 NWSG-TFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR---------EG--IAL 135 (692)
Q Consensus 68 ~w~~-~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~---------~~--~~l 135 (692)
.|.. ..++++.+.+.+.+ +||..+||+|..+||.++.++|+.+.|+||||||++|++|++.. ++ -+|
T Consensus 5 ~~~~l~~~L~~~l~~~l~~-~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgal 83 (567)
T KOG0345|consen 5 SFSSLAPPLSPWLLEALDE-SGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGAL 83 (567)
T ss_pred chhhcCCCccHHHHHHHHh-cCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEE
Confidence 6776 67788999999985 69999999999999999999999999999999999999998732 22 689
Q ss_pred EEcccHHHHHHHHHHHHHc-----CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhc
Q 035988 136 VVSPLLSLIQDQVMCLAAL-----GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHA 210 (692)
Q Consensus 136 vi~Pt~~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~ 210 (692)
||+|||+|+.|+...+..+ ++.+.++.|+.+..+.... +... ++.|+|+||++|.+ ++.+-....++
T Consensus 84 IIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~---fkee--~~nIlVgTPGRL~d---i~~~~~~~l~~ 155 (567)
T KOG0345|consen 84 IISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKT---FKEE--GPNILVGTPGRLLD---ILQREAEKLSF 155 (567)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHH---HHHh--CCcEEEeCchhHHH---HHhchhhhccc
Confidence 9999999999999988765 6778999999766544333 3333 78999999998864 33332233446
Q ss_pred CCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEeccC-----CCCc
Q 035988 211 GRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTI-----NRPN 285 (692)
Q Consensus 211 ~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~-----~r~~ 285 (692)
.++.++|+||||++.++| |...+.. ++......+.+=+||||.+..+.+.....|..+..+.+.... .+-.
T Consensus 156 rsLe~LVLDEADrLldmg--Fe~~~n~--ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~ 231 (567)
T KOG0345|consen 156 RSLEILVLDEADRLLDMG--FEASVNT--ILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLA 231 (567)
T ss_pred cccceEEecchHhHhccc--HHHHHHH--HHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhc
Confidence 789999999999999999 8888776 344444456667999999999888666655544443332222 1224
Q ss_pred ceEEEeeccCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHC--CCceeEeccCCCHHHHHHHHHHHhc
Q 035988 286 LFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQR--GISADYYHADMDINAREKVHMRWSK 363 (692)
Q Consensus 286 l~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~--g~~v~~~h~~~~~~eR~~~~~~f~~ 363 (692)
++|.++.. ..+...+.+++... ..+++|||++|...++..+..|... +..+..+||.|+...|..+++.|++
T Consensus 232 ~~Y~v~~a----~eK~~~lv~~L~~~--~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~ 305 (567)
T KOG0345|consen 232 LEYLVCEA----DEKLSQLVHLLNNN--KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRK 305 (567)
T ss_pred ceeeEecH----HHHHHHHHHHHhcc--ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHh
Confidence 55666543 34577888888865 7899999999999999999998765 6789999999999999999999999
Q ss_pred CCCcEEEeccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHHHHHHHH
Q 035988 364 NKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMV 431 (692)
Q Consensus 364 g~~~ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~~~~l~ 431 (692)
..-.+|+||++++||||+|+|++||+||+|.+...|+||+||+||.|+.|.+++|..+.+..+...+-
T Consensus 306 ~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~ 373 (567)
T KOG0345|consen 306 LSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLR 373 (567)
T ss_pred ccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999998776665553
No 25
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=2e-48 Score=427.71 Aligned_cols=345 Identities=21% Similarity=0.340 Sum_probs=271.7
Q ss_pred ccccccCCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc------CCeEEEEcc
Q 035988 66 VENWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR------EGIALVVSP 139 (692)
Q Consensus 66 ~~~w~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~------~~~~lvi~P 139 (692)
..+|. .+++++.+.+.+.+ +||..|+|+|.++|+.+++|+|+++.||||||||++|++|++.. +.++||++|
T Consensus 27 ~~~~~-~l~l~~~~~~~l~~-~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~P 104 (401)
T PTZ00424 27 VDSFD-ALKLNEDLLRGIYS-YGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAP 104 (401)
T ss_pred cCCHh-hCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECC
Confidence 44555 67788999988875 79999999999999999999999999999999999999998753 468999999
Q ss_pred cHHHHHHHHHHHHHcC----CCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceE
Q 035988 140 LLSLIQDQVMCLAALG----IPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSL 215 (692)
Q Consensus 140 t~~L~~q~~~~l~~~g----i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~ 215 (692)
+++|+.|+.+.+..++ +.+..+.|+...... ...+.. .++|+|+||+++... +. .....+.++++
T Consensus 105 t~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~---~~~Ivv~Tp~~l~~~---l~--~~~~~l~~i~l 173 (401)
T PTZ00424 105 TRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDD---INKLKA---GVHMVVGTPGRVYDM---ID--KRHLRVDDLKL 173 (401)
T ss_pred CHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHH---HHHHcC---CCCEEEECcHHHHHH---HH--hCCcccccccE
Confidence 9999999999888763 455556666544322 222222 579999999987531 11 23345678999
Q ss_pred EEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEec-cCCCCcceEEEeecc
Q 035988 216 ISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVS-TINRPNLFYMVREKS 294 (692)
Q Consensus 216 iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~r~~l~~~v~~~~ 294 (692)
+||||||++.+++ |...+.. .+....++.+++++|||++..+......++..+..+.+.. .....++...+....
T Consensus 174 vViDEah~~~~~~--~~~~~~~--i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (401)
T PTZ00424 174 FILDEADEMLSRG--FKGQIYD--VFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVE 249 (401)
T ss_pred EEEecHHHHHhcc--hHHHHHH--HHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecC
Confidence 9999999999888 7666554 4555667889999999999887776666655443332222 112222222222111
Q ss_pred CcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccc
Q 035988 295 SVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVA 374 (692)
Q Consensus 295 ~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~ 374 (692)
........+...+... ...++||||+|++.++.+++.|...++.+..+||+|++++|..+++.|++|+++|||||++
T Consensus 250 -~~~~~~~~l~~~~~~~--~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~ 326 (401)
T PTZ00424 250 -KEEWKFDTLCDLYETL--TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDL 326 (401)
T ss_pred -hHHHHHHHHHHHHHhc--CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEccc
Confidence 1223345555555543 5678999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHHHHHHH
Q 035988 375 FGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSM 430 (692)
Q Consensus 375 ~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~~~~l 430 (692)
+++|||+|++++||++++|.|..+|+||+||+||.|..|.|++|+++.|...+..+
T Consensus 327 l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~ 382 (401)
T PTZ00424 327 LARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEI 382 (401)
T ss_pred ccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998887665554
No 26
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=4.9e-49 Score=408.15 Aligned_cols=337 Identities=21% Similarity=0.262 Sum_probs=283.4
Q ss_pred CCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc----------CCeEEEEcccH
Q 035988 72 TFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR----------EGIALVVSPLL 141 (692)
Q Consensus 72 ~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~----------~~~~lvi~Pt~ 141 (692)
.+.+++....++++ .||..+|++|...|+.++.|+|+++.|.||+|||++|++|++.. +-.++||+|||
T Consensus 86 ~~~LS~~t~kAi~~-~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTR 164 (543)
T KOG0342|consen 86 EGSLSPLTLKAIKE-MGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTR 164 (543)
T ss_pred ccccCHHHHHHHHh-cCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccH
Confidence 77899999999996 59999999999999999999999999999999999999999843 34799999999
Q ss_pred HHHHHHHHHHHHc-----CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhh--hhcCCce
Q 035988 142 SLIQDQVMCLAAL-----GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKC--HHAGRLS 214 (692)
Q Consensus 142 ~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~--~~~~~l~ 214 (692)
+|+.|++.+++++ ++.+.++.|+........ .+.. ++.|+|+||++| .+++++. +...++.
T Consensus 165 ELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~---kl~k---~~niliATPGRL------lDHlqNt~~f~~r~~k 232 (543)
T KOG0342|consen 165 ELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEAD---KLVK---GCNILIATPGRL------LDHLQNTSGFLFRNLK 232 (543)
T ss_pred HHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHH---Hhhc---cccEEEeCCchH------HhHhhcCCcchhhccc
Confidence 9999999998875 677888888776543222 2222 799999999965 4555532 2345678
Q ss_pred EEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEec-------cCCCCcce
Q 035988 215 LISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVS-------TINRPNLF 287 (692)
Q Consensus 215 ~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~-------~~~r~~l~ 287 (692)
++|+||||++++.| |+.++.+ ++......++.++||||.++.+.+...-.|.- +++.+.. ..++-+.-
T Consensus 233 ~lvlDEADrlLd~G--F~~di~~--Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~-d~~~v~~~d~~~~~The~l~Qg 307 (543)
T KOG0342|consen 233 CLVLDEADRLLDIG--FEEDVEQ--IIKILPKQRQTLLFSATQPSKVKDLARGALKR-DPVFVNVDDGGERETHERLEQG 307 (543)
T ss_pred eeEeecchhhhhcc--cHHHHHH--HHHhccccceeeEeeCCCcHHHHHHHHHhhcC-CceEeecCCCCCcchhhcccce
Confidence 99999999999999 9999888 34444457889999999999998877777665 4443322 22333455
Q ss_pred EEEeeccCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCc
Q 035988 288 YMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQ 367 (692)
Q Consensus 288 ~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ 367 (692)
|.+.+... .+..+..+++++. ...++||||+|...+..+++.|+...++|..+||++++..|..+...|++.+.-
T Consensus 308 yvv~~~~~----~f~ll~~~LKk~~-~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesg 382 (543)
T KOG0342|consen 308 YVVAPSDS----RFSLLYTFLKKNI-KRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESG 382 (543)
T ss_pred EEeccccc----hHHHHHHHHHHhc-CCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccc
Confidence 66655443 2667888888775 448999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHHHHHHHH
Q 035988 368 VIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMV 431 (692)
Q Consensus 368 ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~~~~l~ 431 (692)
|||||++++||+|+|+|++||+||+|.++++|+||+||+||.|..|.++++..|.+...++.+-
T Consensus 383 IL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 383 ILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK 446 (543)
T ss_pred eEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999988877764
No 27
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4e-49 Score=407.53 Aligned_cols=393 Identities=18% Similarity=0.278 Sum_probs=329.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhccCCCCccCCCCCccccccccCCCCcHHHHHHHHHhcCCCCCCHH
Q 035988 20 VQEQIKQLVDRQDQLYERQSELKSLLE----AFEASRGSPIQYGGSSSTAVENWSGTFEWDSRADDVRLNVFGIPAYRAN 95 (692)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~w~~~~~~~~~~~~~l~~~fg~~~~r~~ 95 (692)
++....+...+.++||++++.++.+-. .++ ..-+....|.+.|.|+..|. .|+++..+...+++. -|..++|+
T Consensus 173 idhs~i~y~p~~kdfy~e~esI~gl~~~d~~~~r-~~Lnlrv~g~s~~rpvtsfe-h~gfDkqLm~airk~-Ey~kptpi 249 (731)
T KOG0339|consen 173 IDHSEIDYEPFNKDFYEEHESIEGLTKMDVIDLR-LTLNLRVSGSSPPRPVTSFE-HFGFDKQLMTAIRKS-EYEKPTPI 249 (731)
T ss_pred cchhhccccccccccccChhhhhccccccchhhH-hhhcceeccCCCCCCcchhh-hcCchHHHHHHHhhh-hcccCCcc
Confidence 445556678889999999987554421 122 12456667888899998887 899999999999975 89999999
Q ss_pred HHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc-----------CCeEEEEcccHHHHHHHHHHHHHc----CCCEEE
Q 035988 96 QQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR-----------EGIALVVSPLLSLIQDQVMCLAAL----GIPAHM 160 (692)
Q Consensus 96 Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~-----------~~~~lvi~Pt~~L~~q~~~~l~~~----gi~~~~ 160 (692)
|.+++|..+.|+|++.+|.||||||.+|+.|++.+ ++..||++||++|+.|++.+++++ |+++++
T Consensus 250 q~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~ 329 (731)
T KOG0339|consen 250 QCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVA 329 (731)
T ss_pred cccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEE
Confidence 99999999999999999999999999999999854 479999999999999999998876 899999
Q ss_pred EecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHH
Q 035988 161 LTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGI 240 (692)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~ 240 (692)
++|+.+..++...+. . ++.|||+||++|.+... .+..++.+++++|||||++|++.| |.++++. +
T Consensus 330 ~ygGgsk~eQ~k~Lk---~---g~EivVaTPgRlid~Vk-----mKatn~~rvS~LV~DEadrmfdmG--fe~qVrS--I 394 (731)
T KOG0339|consen 330 VYGGGSKWEQSKELK---E---GAEIVVATPGRLIDMVK-----MKATNLSRVSYLVLDEADRMFDMG--FEPQVRS--I 394 (731)
T ss_pred eecCCcHHHHHHhhh---c---CCeEEEechHHHHHHHH-----hhcccceeeeEEEEechhhhhccc--cHHHHHH--H
Confidence 999998876654443 2 79999999998865332 245577899999999999999999 9999988 5
Q ss_pred HHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEeccCCCCcc-eEEEeeccCcchHHHHHHHHHHHHhCCCCCceE
Q 035988 241 LKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNL-FYMVREKSSVGKVVIDEIAKYIQESYPNSESGI 319 (692)
Q Consensus 241 l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l-~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~~I 319 (692)
.....|+.|.++||||+...+.......|..+..++.. .....|- ....+........++.++...|.+.. ..+++|
T Consensus 395 ~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg-~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~-S~gkvl 472 (731)
T KOG0339|consen 395 KQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQG-EVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFS-SEGKVL 472 (731)
T ss_pred HhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEe-ehhccccchhheeeeccCcHHHHHHHHHHhhhhc-cCCcEE
Confidence 56678999999999999999999999999877655543 2222221 11222222334567788887777654 678999
Q ss_pred EEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEEeCCCCCHHHH
Q 035988 320 VYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETY 399 (692)
Q Consensus 320 If~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y 399 (692)
||+.-...++.++..|+-.++.+..+||+|.+.+|.+++..|+.+...|||+|+++.+|+|+|+++.||+||+-++++.|
T Consensus 473 ifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdth 552 (731)
T KOG0339|consen 473 IFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTH 552 (731)
T ss_pred EEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCeeEeecCCCCHHHHHHHHh
Q 035988 400 YQESGRAGRDGLPSECLLFFRPADVPRQSSMVF 432 (692)
Q Consensus 400 ~Qr~GRagR~G~~g~~i~l~~~~d~~~~~~l~~ 432 (692)
.||+||+||.|..|.+|.|++..|......+++
T Consensus 553 thrigrtgRag~kGvayTlvTeKDa~fAG~LVn 585 (731)
T KOG0339|consen 553 THRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVN 585 (731)
T ss_pred HHHhhhcccccccceeeEEechhhHHHhhHHHH
Confidence 999999999999999999999999876555543
No 28
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-48 Score=406.43 Aligned_cols=336 Identities=20% Similarity=0.285 Sum_probs=283.1
Q ss_pred CCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc----------CCeEEEEcccH
Q 035988 72 TFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR----------EGIALVVSPLL 141 (692)
Q Consensus 72 ~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~----------~~~~lvi~Pt~ 141 (692)
.+|++......|++. +|..++.+|+++||..|.|+|++..|.||||||++|++|.+.+ +--+|||+|||
T Consensus 73 dlpls~~t~kgLke~-~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTR 151 (758)
T KOG0343|consen 73 DLPLSQKTLKGLKEA-KFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTR 151 (758)
T ss_pred hCCCchHHHHhHhhc-CCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchH
Confidence 899999999999986 9999999999999999999999999999999999999998854 34799999999
Q ss_pred HHHHHHHHHHHHcC----CCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhh--hhcCCceE
Q 035988 142 SLIQDQVMCLAALG----IPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKC--HHAGRLSL 215 (692)
Q Consensus 142 ~L~~q~~~~l~~~g----i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~--~~~~~l~~ 215 (692)
+|+.|++..+.+.| ..+..+.|+........ .+. ..+|+||||++|. .++... ++..++.+
T Consensus 152 ELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~e---Ri~----~mNILVCTPGRLL------QHmde~~~f~t~~lQm 218 (758)
T KOG0343|consen 152 ELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELE---RIS----QMNILVCTPGRLL------QHMDENPNFSTSNLQM 218 (758)
T ss_pred HHHHHHHHHHHHHhhccccccceeecCchhHHHHH---hhh----cCCeEEechHHHH------HHhhhcCCCCCCcceE
Confidence 99999999999874 67778888776443222 121 7899999999664 444432 34567999
Q ss_pred EEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEecc--CCCC---cceEEE
Q 035988 216 ISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVST--INRP---NLFYMV 290 (692)
Q Consensus 216 iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~--~~r~---~l~~~v 290 (692)
+|+||||+++++| |...+.. ++....+.+|.++||||.+..+.+...-.|..+..+.+... ...| ..+|.+
T Consensus 219 LvLDEADR~LDMG--Fk~tL~~--Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~ 294 (758)
T KOG0343|consen 219 LVLDEADRMLDMG--FKKTLNA--IIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVI 294 (758)
T ss_pred EEeccHHHHHHHh--HHHHHHH--HHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEE
Confidence 9999999999999 8888776 55666678999999999999988776655665555444311 2222 345555
Q ss_pred eeccCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHC--CCceeEeccCCCHHHHHHHHHHHhcCCCcE
Q 035988 291 REKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQR--GISADYYHADMDINAREKVHMRWSKNKLQV 368 (692)
Q Consensus 291 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~--g~~v~~~h~~~~~~eR~~~~~~f~~g~~~I 368 (692)
++. ..+++.|..+|..+ ...++|||+.|.+++..+++.+... |+++..+||.|++..|..+...|...+.-|
T Consensus 295 v~l----~~Ki~~L~sFI~sh--lk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~v 368 (758)
T KOG0343|consen 295 VPL----EDKIDMLWSFIKSH--LKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVV 368 (758)
T ss_pred Eeh----hhHHHHHHHHHHhc--cccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceE
Confidence 544 35689999999988 6889999999999999999999876 999999999999999999999999999999
Q ss_pred EEeccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHHHHHHHH
Q 035988 369 IVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMV 431 (692)
Q Consensus 369 LVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~~~~l~ 431 (692)
|+||++++||+|+|.|++||++|+|.++++|+||+||++|.+..|.|+++++|.+-..+-..+
T Consensus 369 LF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~L 431 (758)
T KOG0343|consen 369 LFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKL 431 (758)
T ss_pred EEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999855444433
No 29
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-48 Score=377.60 Aligned_cols=346 Identities=18% Similarity=0.307 Sum_probs=282.8
Q ss_pred cccccccCCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHh------cCCeEEEEc
Q 035988 65 AVENWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVL------REGIALVVS 138 (692)
Q Consensus 65 ~~~~w~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~------~~~~~lvi~ 138 (692)
++..|. ..++.+++++.+.. +||..|..+|+.||+.|+.|+|++++|..|+|||.+|.+..+. +...++|++
T Consensus 25 v~~~F~-~Mgl~edlLrgiY~-yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lils 102 (400)
T KOG0328|consen 25 VIPTFD-DMGLKEDLLRGIYA-YGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILS 102 (400)
T ss_pred cccchh-hcCchHHHHHHHHH-hccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEec
Confidence 344555 77888899988885 6999999999999999999999999999999999988765443 236799999
Q ss_pred ccHHHHHHHHHHHHHc----CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCce
Q 035988 139 PLLSLIQDQVMCLAAL----GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLS 214 (692)
Q Consensus 139 Pt~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~ 214 (692)
|||+|+.|+.+.+..+ |+.+..+.|+.+..+.....+ .+.+++.+||+++.+..+ ...+....+.
T Consensus 103 PTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld------~G~hvVsGtPGrv~dmik-----r~~L~tr~vk 171 (400)
T KOG0328|consen 103 PTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLD------YGQHVVSGTPGRVLDMIK-----RRSLRTRAVK 171 (400)
T ss_pred ChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhc------ccceEeeCCCchHHHHHH-----hcccccccee
Confidence 9999999999999887 577777777776554322222 278999999998875332 2333456899
Q ss_pred EEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEecc---CCCCcceEEEe
Q 035988 215 LISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVST---INRPNLFYMVR 291 (692)
Q Consensus 215 ~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~---~~r~~l~~~v~ 291 (692)
++|+||||.+++-| |..+.-. .++...|++|++++|||++.++.+....++..+..+..... ..--..+|...
T Consensus 172 mlVLDEaDemL~kg--fk~Qiyd--iyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~v 247 (400)
T KOG0328|consen 172 MLVLDEADEMLNKG--FKEQIYD--IYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAV 247 (400)
T ss_pred EEEeccHHHHHHhh--HHHHHHH--HHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeee
Confidence 99999999999888 8877766 66777789999999999999999888877665543333211 11123345444
Q ss_pred eccCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEe
Q 035988 292 EKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVG 371 (692)
Q Consensus 292 ~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVa 371 (692)
.++. .+.+.|.++.... .-..++|||||+..++.|.+.+++.++.+...||+|++++|+.++.+|+.|+.+||++
T Consensus 248 e~Ee---wKfdtLcdLYd~L--tItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLit 322 (400)
T KOG0328|consen 248 EKEE---WKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLIT 322 (400)
T ss_pred chhh---hhHhHHHHHhhhh--ehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEE
Confidence 4444 3455566655544 5678999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHHHHHHHHh
Q 035988 372 TVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVF 432 (692)
Q Consensus 372 T~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~~~~l~~ 432 (692)
|++.++|||+|.|++|||||+|.+.+.|+||+||.||.|+.|.++-|+...|+..++.+..
T Consensus 323 TDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq 383 (400)
T KOG0328|consen 323 TDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQ 383 (400)
T ss_pred echhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999877776543
No 30
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=6.6e-47 Score=438.53 Aligned_cols=333 Identities=20% Similarity=0.269 Sum_probs=252.3
Q ss_pred CCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc-----CCeEEEEcccHHHHHHHH
Q 035988 74 EWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR-----EGIALVVSPLLSLIQDQV 148 (692)
Q Consensus 74 ~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~-----~~~~lvi~Pt~~L~~q~~ 148 (692)
.+++.+.+.|.+ .||..|+++|.++|+.+++|+|+++.+|||||||+||++|++.. +.++|||+||++|++|+.
T Consensus 20 ~l~~~l~~~L~~-~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~ 98 (742)
T TIGR03817 20 WAHPDVVAALEA-AGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQL 98 (742)
T ss_pred cCCHHHHHHHHH-cCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHH
Confidence 467888999975 59999999999999999999999999999999999999998843 368999999999999999
Q ss_pred HHHHHc---CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCccccc
Q 035988 149 MCLAAL---GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCS 225 (692)
Q Consensus 149 ~~l~~~---gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~ 225 (692)
..++++ ++++..+.|+....++..+ .. .++|+++||+++... .+.........+.++++|||||||.+.
T Consensus 99 ~~l~~l~~~~i~v~~~~Gdt~~~~r~~i----~~---~~~IivtTPd~L~~~-~L~~~~~~~~~l~~l~~vViDEah~~~ 170 (742)
T TIGR03817 99 RAVRELTLRGVRPATYDGDTPTEERRWA----RE---HARYVLTNPDMLHRG-ILPSHARWARFLRRLRYVVIDECHSYR 170 (742)
T ss_pred HHHHHhccCCeEEEEEeCCCCHHHHHHH----hc---CCCEEEEChHHHHHh-hccchhHHHHHHhcCCEEEEeChhhcc
Confidence 999987 5677788888776544222 21 589999999988531 111111111235789999999999986
Q ss_pred c-cCCCchHHHHHHHHHHhhCC-CCCEEEEecccchhhHHHHHHHhcccceEEEeccC-CCCcceEEEeecc--------
Q 035988 226 Q-WGHDFRPDYKNLGILKTQFP-DVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTI-NRPNLFYMVREKS-------- 294 (692)
Q Consensus 226 ~-~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~-~r~~l~~~v~~~~-------- 294 (692)
+ +|..+...+.++..+....+ +.+++++|||.+... .....+++.+ ...+.... .+....+.+....
T Consensus 171 g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~-~~~~~l~g~~-~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~ 248 (742)
T TIGR03817 171 GVFGSHVALVLRRLRRLCARYGASPVFVLASATTADPA-AAASRLIGAP-VVAVTEDGSPRGARTVALWEPPLTELTGEN 248 (742)
T ss_pred CccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHH-HHHHHHcCCC-eEEECCCCCCcCceEEEEecCCcccccccc
Confidence 4 33334444555555554443 568899999998764 3455555543 22222111 1111211111110
Q ss_pred ------CcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHC--------CCceeEeccCCCHHHHHHHHHH
Q 035988 295 ------SVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQR--------GISADYYHADMDINAREKVHMR 360 (692)
Q Consensus 295 ------~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~--------g~~v~~~h~~~~~~eR~~~~~~ 360 (692)
.........+..++. .+.++||||+|++.|+.++..|++. +.++..|||++++++|..++++
T Consensus 249 ~~~~r~~~~~~~~~~l~~l~~----~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~ 324 (742)
T TIGR03817 249 GAPVRRSASAEAADLLADLVA----EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERA 324 (742)
T ss_pred ccccccchHHHHHHHHHHHHH----CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHH
Confidence 001123334444443 5689999999999999999998764 5678999999999999999999
Q ss_pred HhcCCCcEEEeccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCC
Q 035988 361 WSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRP 421 (692)
Q Consensus 361 f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~ 421 (692)
|++|++++||||+++++|||+|++++||++++|.++++|+||+|||||.|..|.++++.+.
T Consensus 325 f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~ 385 (742)
T TIGR03817 325 LRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARD 385 (742)
T ss_pred HHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCC
Confidence 9999999999999999999999999999999999999999999999999999999999864
No 31
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.5e-48 Score=431.76 Aligned_cols=397 Identities=18% Similarity=0.304 Sum_probs=329.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhccCCCCccCCCCCccccccccCCCCcHHHHHHHHHhcCCCCC
Q 035988 17 VRLVQEQIKQLVDRQDQLYERQSELKSL----LEAFEASRGSPIQYGGSSSTAVENWSGTFEWDSRADDVRLNVFGIPAY 92 (692)
Q Consensus 17 l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~w~~~~~~~~~~~~~l~~~fg~~~~ 92 (692)
+..+..+......|++.|+.+..+++.+ ++.++.....+...|..+|.|+..|. ..+++..++..++ .+||..+
T Consensus 311 ~~~~~~S~~~~epFRknfy~e~~di~~ms~~eV~~yr~~l~~i~v~g~~~pkpv~sW~-q~gl~~~il~tlk-kl~y~k~ 388 (997)
T KOG0334|consen 311 LIQVDHSKISYEPFRKNFYIEVRDIKRMSAAEVDEYRCELDGIKVKGKECPKPVTSWT-QCGLSSKILETLK-KLGYEKP 388 (997)
T ss_pred eeecccccccchhhhhcccccchhHHHHHHHHHHHhhcCccceeeccCCCCcccchHh-hCCchHHHHHHHH-HhcCCCC
Confidence 3344555567788999998777774444 66677777778889999999999999 6778888999994 6899999
Q ss_pred CHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc-----------CCeEEEEcccHHHHHHHHHHHHHc----CCC
Q 035988 93 RANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR-----------EGIALVVSPLLSLIQDQVMCLAAL----GIP 157 (692)
Q Consensus 93 r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~-----------~~~~lvi~Pt~~L~~q~~~~l~~~----gi~ 157 (692)
+|+|.+|||+|++|+|+|.+|.||||||++|+||++.+ ++.+||++||++|+.|+.+.++++ |+.
T Consensus 389 ~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir 468 (997)
T KOG0334|consen 389 TPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIR 468 (997)
T ss_pred cchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCce
Confidence 99999999999999999999999999999999999854 589999999999999999999886 899
Q ss_pred EEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHH
Q 035988 158 AHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKN 237 (692)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~ 237 (692)
+++++|+.....+. ..+++ ++.|+||||+++.+... ..-.+..++.++.++|+||||++++.| |.|+...
T Consensus 469 ~v~vygg~~~~~qi---aelkR---g~eIvV~tpGRmiD~l~--~n~grvtnlrR~t~lv~deaDrmfdmg--fePq~~~ 538 (997)
T KOG0334|consen 469 VVCVYGGSGISQQI---AELKR---GAEIVVCTPGRMIDILC--ANSGRVTNLRRVTYLVLDEADRMFDMG--FEPQITR 538 (997)
T ss_pred EEEecCCccHHHHH---HHHhc---CCceEEeccchhhhhHh--hcCCccccccccceeeechhhhhheec--cCcccch
Confidence 99999998876554 34444 58999999998764211 111234466677799999999999999 9999888
Q ss_pred HHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEec--cC-CCCcceEEEeeccCcchHHHHHHHHHHHHhCCC
Q 035988 238 LGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVS--TI-NRPNLFYMVREKSSVGKVVIDEIAKYIQESYPN 314 (692)
Q Consensus 238 l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~--~~-~r~~l~~~v~~~~~~~~~~~~~l~~~l~~~~~~ 314 (692)
.+....|+.|+++||||.+..+.......+..|..+.+.. .+ ...+....+... ...++..|..+|...+ .
T Consensus 539 --Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~---e~eKf~kL~eLl~e~~-e 612 (997)
T KOG0334|consen 539 --ILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAI---ENEKFLKLLELLGERY-E 612 (997)
T ss_pred --HHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecC---chHHHHHHHHHHHHHh-h
Confidence 7778889999999999999998877778888554433321 11 122333333332 2345677777777665 6
Q ss_pred CCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEEeCCCC
Q 035988 315 SESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSK 394 (692)
Q Consensus 315 ~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~~P~ 394 (692)
..++||||.+...|..+...|.+.|+.|..+||+.++.+|..++++|++|.+.+||||+++++|+|++++..||||++|.
T Consensus 613 ~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pn 692 (997)
T KOG0334|consen 613 DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPN 692 (997)
T ss_pred cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccch
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhcCCCCCCCeeEeecCCCCHHHHHHHH
Q 035988 395 SVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMV 431 (692)
Q Consensus 395 s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~~~~l~ 431 (692)
..++|+||+||+||.|+.|.|++|.++.+......+.
T Consensus 693 h~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~ 729 (997)
T KOG0334|consen 693 HYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLC 729 (997)
T ss_pred hHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHH
Confidence 9999999999999999999999999997766555544
No 32
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-47 Score=403.95 Aligned_cols=358 Identities=16% Similarity=0.232 Sum_probs=282.5
Q ss_pred CccCCCCCccccccccCCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc-----
Q 035988 56 IQYGGSSSTAVENWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR----- 130 (692)
Q Consensus 56 ~~~g~~~~~~~~~w~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~----- 130 (692)
...|.+.|.++..|. ...+.+.+...++ .-||..|+|+|+.+||.+..|+|++++|+||||||.+|++|++..
T Consensus 63 ~~~G~~~p~~i~~f~-~~~l~~~l~~ni~-~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~ 140 (482)
T KOG0335|consen 63 KVSGRDVPPHIPTFD-EAILGEALAGNIK-RSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEG 140 (482)
T ss_pred eccCCccCCCccccc-ccchhHHHhhccc-cccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcC
Confidence 355778888888777 5556666666655 459999999999999999999999999999999999999999843
Q ss_pred -----------CCeEEEEcccHHHHHHHHHHHHHc----CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhh
Q 035988 131 -----------EGIALVVSPLLSLIQDQVMCLAAL----GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKIS 195 (692)
Q Consensus 131 -----------~~~~lvi~Pt~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~ 195 (692)
.+.++|++|||+|+.|++.+.+++ +++...+.++...... ...+ ...|+|+++||++|.
T Consensus 141 ~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q---~~~~---~~gcdIlvaTpGrL~ 214 (482)
T KOG0335|consen 141 PEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQ---LRFI---KRGCDILVATPGRLK 214 (482)
T ss_pred cccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhh---hhhh---ccCccEEEecCchhh
Confidence 278999999999999999999987 6777777777443322 2222 237999999999876
Q ss_pred chHHHHHHHHhhhhcCCceEEEEeCcccccc-cCCCchHHHHHHHHHHhhC--CCCCEEEEecccchhhHHHHHHHhccc
Q 035988 196 KSKRFMSKLEKCHHAGRLSLISIDEAHCCSQ-WGHDFRPDYKNLGILKTQF--PDVPMMALTATATQKVQNDLMEMLHIR 272 (692)
Q Consensus 196 ~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~-~g~~fr~~~~~l~~l~~~~--~~~~~i~lSAT~~~~~~~~i~~~l~~~ 272 (692)
+ +.+ .+...+.++.++|+||||+|.+ +| |.|+++++..-.... ...+.++||||.+..+...+..++...
T Consensus 215 d---~~e--~g~i~l~~~k~~vLDEADrMlD~mg--F~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~ 287 (482)
T KOG0335|consen 215 D---LIE--RGKISLDNCKFLVLDEADRMLDEMG--FEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDN 287 (482)
T ss_pred h---hhh--cceeehhhCcEEEecchHHhhhhcc--ccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhcc
Confidence 4 222 2345667889999999999999 88 999999854333232 367889999999998888655554431
Q ss_pred -ceEEE-eccCCCCcceEEEeeccCcchHHHHHHHHHHHHhCC--CC-----CceEEEEeccchHHHHHHHHHHCCCcee
Q 035988 273 -KCIKF-VSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYP--NS-----ESGIVYCFSRKECEQVAQELRQRGISAD 343 (692)
Q Consensus 273 -~~~~~-~~~~~r~~l~~~v~~~~~~~~~~~~~l~~~l~~~~~--~~-----~~~IIf~~s~~~~e~l~~~L~~~g~~v~ 343 (692)
..+.+ .......|+...+..... ..+...|.+++..... .. ++++|||.|++.|..++..|...++++.
T Consensus 288 yi~laV~rvg~~~~ni~q~i~~V~~--~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~ 365 (482)
T KOG0335|consen 288 YIFLAVGRVGSTSENITQKILFVNE--MEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAK 365 (482)
T ss_pred ceEEEEeeeccccccceeEeeeecc--hhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCce
Confidence 11111 223344555544444332 2345666666654321 12 3899999999999999999999999999
Q ss_pred EeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCC
Q 035988 344 YYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPAD 423 (692)
Q Consensus 344 ~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d 423 (692)
.+||..++.+|...++.|++|++.+||||++++||+|+|+|++||+||+|.+..+|+||+||+||.|+.|.++.|++..+
T Consensus 366 sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~ 445 (482)
T KOG0335|consen 366 SIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKN 445 (482)
T ss_pred eecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999665
Q ss_pred HHHHHHH
Q 035988 424 VPRQSSM 430 (692)
Q Consensus 424 ~~~~~~l 430 (692)
..-.+.+
T Consensus 446 ~~i~~~L 452 (482)
T KOG0335|consen 446 QNIAKAL 452 (482)
T ss_pred chhHHHH
Confidence 4443333
No 33
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.9e-47 Score=392.97 Aligned_cols=340 Identities=24% Similarity=0.301 Sum_probs=263.3
Q ss_pred CCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc------------CCeEEEEcc
Q 035988 72 TFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR------------EGIALVVSP 139 (692)
Q Consensus 72 ~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~------------~~~~lvi~P 139 (692)
.+++++.+...|...++++.||.+|.++||.+++|+|++|.++||||||++|++|.+.. +..+|||+|
T Consensus 140 ~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivP 219 (708)
T KOG0348|consen 140 SLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVP 219 (708)
T ss_pred hcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEec
Confidence 78999999999999999999999999999999999999999999999999999999853 578999999
Q ss_pred cHHHHHHHHHHHHHcCCCEE------EEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHH--hhhhcC
Q 035988 140 LLSLIQDQVMCLAALGIPAH------MLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLE--KCHHAG 211 (692)
Q Consensus 140 t~~L~~q~~~~l~~~gi~~~------~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~--~~~~~~ 211 (692)
||+|+.|+++.+.++.-+.. ++.|.....+. ..++. ++.|+|+||++|. +++. +.+.+.
T Consensus 220 TREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEK----ARLRK---GiNILIgTPGRLv------DHLknT~~i~~s 286 (708)
T KOG0348|consen 220 TRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEK----ARLRK---GINILIGTPGRLV------DHLKNTKSIKFS 286 (708)
T ss_pred hHHHHHHHHHHHHHHhcCceEEeeceeecccccccHH----HHHhc---CceEEEcCchHHH------HHHhccchheee
Confidence 99999999999999843332 22232223332 23333 7999999999665 4444 234567
Q ss_pred CceEEEEeCcccccccCCCchHHHHHHHHHHhh-------CC----CCCEEEEecccchhhHHHHHHHhcccceEEEe--
Q 035988 212 RLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQ-------FP----DVPMMALTATATQKVQNDLMEMLHIRKCIKFV-- 278 (692)
Q Consensus 212 ~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~-------~~----~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~-- 278 (692)
++.++|+||||++.+.| |..++..+-..... .+ ..+-+++|||++..+..... +.+.+++.+.
T Consensus 287 ~LRwlVlDEaDrlleLG--fekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~--~sLkDpv~I~ld 362 (708)
T KOG0348|consen 287 RLRWLVLDEADRLLELG--FEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLAD--LSLKDPVYISLD 362 (708)
T ss_pred eeeEEEecchhHHHhcc--chhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhh--ccccCceeeecc
Confidence 89999999999999999 88888776544422 22 24568999999988766433 3334444333
Q ss_pred ---cc----------------------CCCC---cceEEEeeccCcchHHHHHHHHHHHHhC--CCCCceEEEEeccchH
Q 035988 279 ---ST----------------------INRP---NLFYMVREKSSVGKVVIDEIAKYIQESY--PNSESGIVYCFSRKEC 328 (692)
Q Consensus 279 ---~~----------------------~~r~---~l~~~v~~~~~~~~~~~~~l~~~l~~~~--~~~~~~IIf~~s~~~~ 328 (692)
.. +.-| ...|.+++..-. +-.|..+|.... ....++|||+.+.+.+
T Consensus 363 ~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLR----LV~Laa~L~~~~k~~~~qk~iVF~S~~d~V 438 (708)
T KOG0348|consen 363 KSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLR----LVALAALLLNKVKFEEKQKMIVFFSCSDSV 438 (708)
T ss_pred chhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchh----HHHHHHHHHHHhhhhhhceeEEEEechhHH
Confidence 11 1111 123444433221 223333333221 2566899999999999
Q ss_pred HHHHHHHHHC----------------------CCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccE
Q 035988 329 EQVAQELRQR----------------------GISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRF 386 (692)
Q Consensus 329 e~l~~~L~~~----------------------g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~ 386 (692)
+.-+..|.+. +.+..-+||+|++++|..+++.|...+-.||+||++++||+|+|+|++
T Consensus 439 eFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~ 518 (708)
T KOG0348|consen 439 EFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGL 518 (708)
T ss_pred HHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCe
Confidence 9999988652 235678999999999999999999999899999999999999999999
Q ss_pred EEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHHHHHHHHh
Q 035988 387 VIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVF 432 (692)
Q Consensus 387 VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~~~~l~~ 432 (692)
||.||+|.+.++|+||+||++|.|..|.+++|..|.+..++..+-.
T Consensus 519 vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~ 564 (708)
T KOG0348|consen 519 VVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKK 564 (708)
T ss_pred EEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHh
Confidence 9999999999999999999999999999999999999886665543
No 34
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-46 Score=374.92 Aligned_cols=347 Identities=18% Similarity=0.234 Sum_probs=269.6
Q ss_pred ccccCCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc------CCeEEEEcccH
Q 035988 68 NWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR------EGIALVVSPLL 141 (692)
Q Consensus 68 ~w~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~------~~~~lvi~Pt~ 141 (692)
+|. .+++++.+.+.++. +|+..++|+|..+||.||.|+|+|.+|.||||||.+|.+|++.+ +..++|++|||
T Consensus 8 ~F~-~LGl~~Wlve~l~~-l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTr 85 (442)
T KOG0340|consen 8 PFS-ILGLSPWLVEQLKA-LGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTR 85 (442)
T ss_pred chh-hcCccHHHHHHHHH-hcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchH
Confidence 444 67888889999985 69999999999999999999999999999999999999999976 45899999999
Q ss_pred HHHHHHHHHHHHc----CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHH-hhhhcCCceEE
Q 035988 142 SLIQDQVMCLAAL----GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLE-KCHHAGRLSLI 216 (692)
Q Consensus 142 ~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~-~~~~~~~l~~i 216 (692)
+|+-|+.+.|..+ ++++.++.|+.+.-.+...+. ..++++++||+++..... ..+. ....+.++.++
T Consensus 86 ELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~------~rPHvVvatPGRlad~l~--sn~~~~~~~~~rlkfl 157 (442)
T KOG0340|consen 86 ELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILS------DRPHVVVATPGRLADHLS--SNLGVCSWIFQRLKFL 157 (442)
T ss_pred HHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcc------cCCCeEecCccccccccc--cCCccchhhhhceeeE
Confidence 9999999999876 688899999876554333322 289999999999875321 1100 12345789999
Q ss_pred EEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEeccCC-----CCcceEEEe
Q 035988 217 SIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTIN-----RPNLFYMVR 291 (692)
Q Consensus 217 VIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~-----r~~l~~~v~ 291 (692)
|+|||+++.+-. |-..+.. ......+.++.++||||.+..+.....--...+.........+ .-...|.+.
T Consensus 158 VlDEADrvL~~~--f~d~L~~--i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~ 233 (442)
T KOG0340|consen 158 VLDEADRVLAGC--FPDILEG--IEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILV 233 (442)
T ss_pred Eecchhhhhccc--hhhHHhh--hhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeec
Confidence 999999998754 6666544 2333334568999999998765543321111111111111111 112233333
Q ss_pred eccCcchHHHHHHHHHHHHhCC-CCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEE
Q 035988 292 EKSSVGKVVIDEIAKYIQESYP-NSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIV 370 (692)
Q Consensus 292 ~~~~~~~~~~~~l~~~l~~~~~-~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILV 370 (692)
...... -.++..+...-+ .++.++||+++..+|+.++..|+..++.+..+||.|++++|...+.+|+.+..+|||
T Consensus 234 ~~~vkd----aYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~ili 309 (442)
T KOG0340|consen 234 SIDVKD----AYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILI 309 (442)
T ss_pred chhhhH----HHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEE
Confidence 332221 233344433211 578899999999999999999999999999999999999999999999999999999
Q ss_pred eccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHHHHHHHHh
Q 035988 371 GTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVF 432 (692)
Q Consensus 371 aT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~~~~l~~ 432 (692)
||+++++|+|+|.|..|||||+|.++.+|+||+||++|+|+.|.++.+++..|+..+..+..
T Consensus 310 aTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~ 371 (442)
T KOG0340|consen 310 ATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEE 371 (442)
T ss_pred EechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888776644
No 35
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=1.2e-47 Score=384.94 Aligned_cols=347 Identities=18% Similarity=0.275 Sum_probs=277.4
Q ss_pred CCccCCCCCccccccccCCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc----
Q 035988 55 PIQYGGSSSTAVENWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR---- 130 (692)
Q Consensus 55 ~~~~g~~~~~~~~~w~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~---- 130 (692)
+...|...|.|+.+|. ...|+..+++.|++ -|+.+|+|+|.+-+|.+++|+|.|.+|-||||||++|.+|.++-
T Consensus 158 I~veGd~ipPPIksF~-eMKFP~~~L~~lk~-KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~Leq 235 (610)
T KOG0341|consen 158 ILVEGDDIPPPIKSFK-EMKFPKPLLRGLKK-KGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQ 235 (610)
T ss_pred EEeeCCCCCCchhhhh-hccCCHHHHHHHHh-cCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHH
Confidence 4556888999999998 56667789999997 59999999999999999999999999999999999999998742
Q ss_pred ----------CCeEEEEcccHHHHHHHHHHHHHc-------C---CCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeC
Q 035988 131 ----------EGIALVVSPLLSLIQDQVMCLAAL-------G---IPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVT 190 (692)
Q Consensus 131 ----------~~~~lvi~Pt~~L~~q~~~~l~~~-------g---i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~T 190 (692)
++..|||+|+|+|+.|+++.+..+ | +++....|+.+..++-...+. +.+|+|+|
T Consensus 236 E~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~------GvHivVAT 309 (610)
T KOG0341|consen 236 EMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRR------GVHIVVAT 309 (610)
T ss_pred HhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhc------CeeEEEcC
Confidence 589999999999999988877654 3 456677777777655444332 79999999
Q ss_pred hhhhhchHHHHHHHH-hhhhcCCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHh
Q 035988 191 PEKISKSKRFMSKLE-KCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEML 269 (692)
Q Consensus 191 pe~l~~~~~~~~~l~-~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l 269 (692)
|++|.+ .+. +..++.-..++++||||++.++| |..+++.+ +...-..+|.++||||++..++......|
T Consensus 310 PGRL~D------mL~KK~~sLd~CRyL~lDEADRmiDmG--FEddir~i--F~~FK~QRQTLLFSATMP~KIQ~FAkSAL 379 (610)
T KOG0341|consen 310 PGRLMD------MLAKKIMSLDACRYLTLDEADRMIDMG--FEDDIRTI--FSFFKGQRQTLLFSATMPKKIQNFAKSAL 379 (610)
T ss_pred cchHHH------HHHHhhccHHHHHHhhhhhHHHHhhcc--chhhHHHH--HHHHhhhhheeeeeccccHHHHHHHHhhc
Confidence 997753 333 34456678899999999999999 99988873 22222367899999999998887776665
Q ss_pred cccceEEEeccCCCCcceEEEeeccCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCC
Q 035988 270 HIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADM 349 (692)
Q Consensus 270 ~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~ 349 (692)
--+..+.+ ......++.....-...+.+.++-.+++-++. ...+++|||..+.+++.++++|--.|+.+..+|||-
T Consensus 380 VKPvtvNV-GRAGAAsldViQevEyVkqEaKiVylLeCLQK---T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGK 455 (610)
T KOG0341|consen 380 VKPVTVNV-GRAGAASLDVIQEVEYVKQEAKIVYLLECLQK---TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGK 455 (610)
T ss_pred ccceEEec-ccccccchhHHHHHHHHHhhhhhhhHHHHhcc---CCCceEEEeccccChHHHHHHHHHccceeEEeecCc
Confidence 44333222 11111111110000011122334445555553 567899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCC
Q 035988 350 DINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPAD 423 (692)
Q Consensus 350 ~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d 423 (692)
++++|...++.|+.|+.+|||||++++.|+|+|++.+|||||+|..+++|+||+||+||.|+.|.+.+|.++..
T Consensus 456 DQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~ 529 (610)
T KOG0341|consen 456 DQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQ 529 (610)
T ss_pred chhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998764
No 36
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-46 Score=392.56 Aligned_cols=341 Identities=22% Similarity=0.305 Sum_probs=270.4
Q ss_pred CCCccccccccCCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC-CCEEEEecCCChhHHHHHHHHHhc---------
Q 035988 61 SSSTAVENWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSG-RDVLVIMAAGGGKSLCYQLPAVLR--------- 130 (692)
Q Consensus 61 ~~~~~~~~w~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g-~dviv~apTGsGKTl~~~lpal~~--------- 130 (692)
+.+..++.|. .|.++.+++.+|.. .||+.|+|+|..+||++..| .|++..|.||||||++|-+|++..
T Consensus 175 ~~~~DvsAW~-~l~lp~~iL~aL~~-~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~ 252 (731)
T KOG0347|consen 175 SSKVDVSAWK-NLFLPMEILRALSN-LGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQ 252 (731)
T ss_pred ccccChHHHh-cCCCCHHHHHHHHh-cCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHh
Confidence 4466788899 56899999999996 59999999999999999999 799999999999999999999862
Q ss_pred ----------CCeEEEEcccHHHHHHHHHHHHHc----CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhc
Q 035988 131 ----------EGIALVVSPLLSLIQDQVMCLAAL----GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISK 196 (692)
Q Consensus 131 ----------~~~~lvi~Pt~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~ 196 (692)
.+.+||++|||+|+.|+.+.+... ++++..++|++....+..++.. .++|+|+||++|-
T Consensus 253 e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~------~p~IVVATPGRlw- 325 (731)
T KOG0347|consen 253 ELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ------RPDIVVATPGRLW- 325 (731)
T ss_pred hhhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc------CCCEEEecchHHH-
Confidence 135999999999999999999875 8999999999998877766654 7899999999653
Q ss_pred hHHHHHHHH----hhhhcCCceEEEEeCcccccccCCCchHHHHHHHHHHh--hCCCCCEEEEecccchhhHHH------
Q 035988 197 SKRFMSKLE----KCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKT--QFPDVPMMALTATATQKVQND------ 264 (692)
Q Consensus 197 ~~~~~~~l~----~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~--~~~~~~~i~lSAT~~~~~~~~------ 264 (692)
+.+. ...++..+.++|+||||+|.+-|| |...-.-|..+.. ..+..|.+.||||++-.....
T Consensus 326 -----eli~e~n~~l~~~k~vkcLVlDEaDRmvekgh-F~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k 399 (731)
T KOG0347|consen 326 -----ELIEEDNTHLGNFKKVKCLVLDEADRMVEKGH-FEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRK 399 (731)
T ss_pred -----HHHHhhhhhhhhhhhceEEEEccHHHHhhhcc-HHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhh
Confidence 3333 233667899999999999999996 5554444444442 234678999999986433222
Q ss_pred --------------HHHHhcccceEEEeccCCCCcceEEEeeccCcchHHHHHHHHHHHHh-------------CCCCCc
Q 035988 265 --------------LMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQES-------------YPNSES 317 (692)
Q Consensus 265 --------------i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~l~~~l~~~-------------~~~~~~ 317 (692)
+++.+++...-.+. ..... ......|.+-+-.+ ....++
T Consensus 400 ~~~k~~~~~~kiq~Lmk~ig~~~kpkii----------D~t~q----~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGr 465 (731)
T KOG0347|consen 400 KKDKEDELNAKIQHLMKKIGFRGKPKII----------DLTPQ----SATASTLTESLIECPPLEKDLYLYYFLTRYPGR 465 (731)
T ss_pred ccchhhhhhHHHHHHHHHhCccCCCeeE----------ecCcc----hhHHHHHHHHhhcCCccccceeEEEEEeecCCc
Confidence 22223332211111 10000 01111111111100 014689
Q ss_pred eEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEEeCCCCCHH
Q 035988 318 GIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVE 397 (692)
Q Consensus 318 ~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~~P~s~~ 397 (692)
+|||||++..+..|+-.|+..+++...+|+.|.+++|...+++|++....|||||++++||+|||+|.+||||..|.+.+
T Consensus 466 TlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtse 545 (731)
T KOG0347|consen 466 TLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSE 545 (731)
T ss_pred eEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCeeEeecCCCCHHHHHHH
Q 035988 398 TYYQESGRAGRDGLPSECLLFFRPADVPRQSSM 430 (692)
Q Consensus 398 ~y~Qr~GRagR~G~~g~~i~l~~~~d~~~~~~l 430 (692)
.|+||.||++|++..|..++++.|.+...+..+
T Consensus 546 iYVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL 578 (731)
T KOG0347|consen 546 IYVHRSGRTARANSEGVSVMLCGPQEVGPLKKL 578 (731)
T ss_pred eeEecccccccccCCCeEEEEeChHHhHHHHHH
Confidence 999999999999999999999999987665554
No 37
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-46 Score=369.59 Aligned_cols=337 Identities=21% Similarity=0.273 Sum_probs=275.2
Q ss_pred CCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhcC------CeEEEEcccHHHHHH
Q 035988 73 FEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLRE------GIALVVSPLLSLIQD 146 (692)
Q Consensus 73 ~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~~------~~~lvi~Pt~~L~~q 146 (692)
+-+..+++.-+.+ .||..|.|+|.++||.++.|+|+++-|..|+|||-+|.+|.+.+- -.++|++|||+|+-|
T Consensus 90 ~~Lkr~LLmgIfe-~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQ 168 (459)
T KOG0326|consen 90 YCLKRELLMGIFE-KGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQ 168 (459)
T ss_pred hhhhHHHHHHHHH-hccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHH
Confidence 4445556666654 499999999999999999999999999999999999999999652 478999999999999
Q ss_pred HHHHHHHc----CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHH-hhhhcCCceEEEEeCc
Q 035988 147 QVMCLAAL----GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLE-KCHHAGRLSLISIDEA 221 (692)
Q Consensus 147 ~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~-~~~~~~~l~~iVIDEa 221 (692)
..+.++.+ |+.+.+.+|+.+..+ ++.+....++++|+||+++.+ ... ....+++..++|+|||
T Consensus 169 tSqvc~~lskh~~i~vmvttGGT~lrD------DI~Rl~~~VH~~vgTPGRIlD------L~~KgVa~ls~c~~lV~DEA 236 (459)
T KOG0326|consen 169 TSQVCKELSKHLGIKVMVTTGGTSLRD------DIMRLNQTVHLVVGTPGRILD------LAKKGVADLSDCVILVMDEA 236 (459)
T ss_pred HHHHHHHHhcccCeEEEEecCCccccc------ceeeecCceEEEEcCChhHHH------HHhcccccchhceEEEechh
Confidence 88887765 788888888877542 222333489999999997764 223 3345678999999999
Q ss_pred ccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEeccCC--CCcceEEEeeccCcchH
Q 035988 222 HCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTIN--RPNLFYMVREKSSVGKV 299 (692)
Q Consensus 222 H~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~--r~~l~~~v~~~~~~~~~ 299 (692)
|.+++.. |.+.+.. .+.-..++.|++++|||.|-.+...+.++|..+-.+....... -...+|..+... .
T Consensus 237 DKlLs~~--F~~~~e~--li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e~----q 308 (459)
T KOG0326|consen 237 DKLLSVD--FQPIVEK--LISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEER----Q 308 (459)
T ss_pred hhhhchh--hhhHHHH--HHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhhhhhcchhhheeeechh----h
Confidence 9998754 8888776 3444455889999999999999999999887665554433222 223455555433 2
Q ss_pred HHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEecccccccc
Q 035988 300 VIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGI 379 (692)
Q Consensus 300 ~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GI 379 (692)
++..|..++... .-...||||||.+.+|.++..+.+.|++|.++|+.|-+++|..++.+|++|..+.||||+.+.|||
T Consensus 309 KvhCLntLfskL--qINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGI 386 (459)
T KOG0326|consen 309 KVHCLNTLFSKL--QINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGI 386 (459)
T ss_pred hhhhHHHHHHHh--cccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhccc
Confidence 344454444443 567899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHHHHHHHHh
Q 035988 380 NKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVF 432 (692)
Q Consensus 380 Dip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~~~~l~~ 432 (692)
|+++|++||+||+|++.++|.||+||+||.|..|.++.+++.+|...+..+..
T Consensus 387 DiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~ 439 (459)
T KOG0326|consen 387 DIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQ 439 (459)
T ss_pred ccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999998776666544
No 38
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-44 Score=369.94 Aligned_cols=333 Identities=20% Similarity=0.272 Sum_probs=267.3
Q ss_pred CCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc------------CCeEEEEcc
Q 035988 72 TFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR------------EGIALVVSP 139 (692)
Q Consensus 72 ~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~------------~~~~lvi~P 139 (692)
.|++++.+++++.+ .||..|+-+|+.|||.++.|+|+++.|.||||||.+|++|.+.. ++.++|++|
T Consensus 23 ~~gLD~RllkAi~~-lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvP 101 (569)
T KOG0346|consen 23 EFGLDSRLLKAITK-LGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVP 101 (569)
T ss_pred HhCCCHHHHHHHHH-hCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEec
Confidence 89999999999996 59999999999999999999999999999999999999999853 468999999
Q ss_pred cHHHHHHHHHHHHHc------CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHh--hhhcC
Q 035988 140 LLSLIQDQVMCLAAL------GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEK--CHHAG 211 (692)
Q Consensus 140 t~~L~~q~~~~l~~~------gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~--~~~~~ 211 (692)
|++|++|.+..+.++ .+++.-+.++.+.......+ .+ .++|+|+||.++.. ++.. ...+.
T Consensus 102 TkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L----~d--~pdIvV~TP~~ll~------~~~~~~~~~~~ 169 (569)
T KOG0346|consen 102 TKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVAL----MD--LPDIVVATPAKLLR------HLAAGVLEYLD 169 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHH----cc--CCCeEEeChHHHHH------HHhhccchhhh
Confidence 999999999998876 34555555454444333222 22 79999999998753 2221 13557
Q ss_pred CceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEeccCC--CCcc-eE
Q 035988 212 RLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTIN--RPNL-FY 288 (692)
Q Consensus 212 ~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~--r~~l-~~ 288 (692)
.+.++|+||||.++.+| |..++.. ......+..|.++||||++..+...-.-++..+....+..+.. ..++ .|
T Consensus 170 ~l~~LVvDEADLllsfG--Yeedlk~--l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy 245 (569)
T KOG0346|consen 170 SLSFLVVDEADLLLSFG--YEEDLKK--LRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQY 245 (569)
T ss_pred heeeEEechhhhhhhcc--cHHHHHH--HHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEE
Confidence 89999999999999999 8888877 3344456788999999999987765444444444333332221 1222 34
Q ss_pred EEeeccCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcE
Q 035988 289 MVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQV 368 (692)
Q Consensus 289 ~v~~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~I 368 (692)
.+.... ++++-.+..+++-.+ -.++.|||+||++.|..+.-.|...|++..+++|.|+...|..++++|..|-+++
T Consensus 246 ~v~cse---~DKflllyallKL~L-I~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~Ydi 321 (569)
T KOG0346|consen 246 QVKCSE---EDKFLLLYALLKLRL-IRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDI 321 (569)
T ss_pred EEEecc---chhHHHHHHHHHHHH-hcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeE
Confidence 444332 344445555554333 5689999999999999999999999999999999999999999999999999999
Q ss_pred EEecc-----------------------------------ccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCC
Q 035988 369 IVGTV-----------------------------------AFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPS 413 (692)
Q Consensus 369 LVaT~-----------------------------------~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g 413 (692)
+|||+ -.+||||+.+|.+|+|||+|.+..+|+||+||++|+|++|
T Consensus 322 vIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~G 401 (569)
T KOG0346|consen 322 VIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKG 401 (569)
T ss_pred EEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCC
Confidence 99998 1689999999999999999999999999999999999999
Q ss_pred eeEeecCCCCHH
Q 035988 414 ECLLFFRPADVP 425 (692)
Q Consensus 414 ~~i~l~~~~d~~ 425 (692)
.++.|+.|.+..
T Consensus 402 talSfv~P~e~~ 413 (569)
T KOG0346|consen 402 TALSFVSPKEEF 413 (569)
T ss_pred ceEEEecchHHh
Confidence 999999998765
No 39
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=2.4e-43 Score=416.59 Aligned_cols=406 Identities=19% Similarity=0.232 Sum_probs=281.0
Q ss_pred CcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc------------CCeEEEEcccHH
Q 035988 75 WDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR------------EGIALVVSPLLS 142 (692)
Q Consensus 75 ~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~------------~~~~lvi~Pt~~ 142 (692)
+++.+.+.+++ +|..|+|+|.++|+.+++|+|++++||||||||++|++|++.. +..+|||+||++
T Consensus 18 l~~~v~~~~~~--~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtra 95 (876)
T PRK13767 18 LRPYVREWFKE--KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRA 95 (876)
T ss_pred cCHHHHHHHHH--ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHH
Confidence 56777777775 5678999999999999999999999999999999999998732 246999999999
Q ss_pred HHHHHHHHHHH---------------c-CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHh
Q 035988 143 LIQDQVMCLAA---------------L-GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEK 206 (692)
Q Consensus 143 L~~q~~~~l~~---------------~-gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~ 206 (692)
|+.|+.+.+.. + ++++..++|+.+..++..... ..++|+|+|||++... +..-..
T Consensus 96 La~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~------~~p~IlVtTPE~L~~l---l~~~~~ 166 (876)
T PRK13767 96 LNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLK------KPPHILITTPESLAIL---LNSPKF 166 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHh------CCCCEEEecHHHHHHH---hcChhH
Confidence 99999876542 1 567788899887765543332 1689999999988531 111011
Q ss_pred hhhcCCceEEEEeCccccccc--CCCchHHHHHHHHHHhhC-CCCCEEEEecccchhhHHHHHHHhccc------ceEEE
Q 035988 207 CHHAGRLSLISIDEAHCCSQW--GHDFRPDYKNLGILKTQF-PDVPMMALTATATQKVQNDLMEMLHIR------KCIKF 277 (692)
Q Consensus 207 ~~~~~~l~~iVIDEaH~l~~~--g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~------~~~~~ 277 (692)
...+.++++|||||+|.+.+. |..+...+.+ +.... ++.+++++|||+++ .+.+..++... ....+
T Consensus 167 ~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~r---L~~l~~~~~q~IglSATl~~--~~~va~~L~~~~~~~~~r~~~i 241 (876)
T PRK13767 167 REKLRTVKWVIVDEIHSLAENKRGVHLSLSLER---LEELAGGEFVRIGLSATIEP--LEEVAKFLVGYEDDGEPRDCEI 241 (876)
T ss_pred HHHHhcCCEEEEechhhhccCccHHHHHHHHHH---HHHhcCCCCeEEEEecccCC--HHHHHHHhcCccccCCCCceEE
Confidence 113568999999999999753 3223333333 33333 56788999999976 34556666532 12222
Q ss_pred e-ccCCCCcceEEEeecc-----CcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHC------CCceeEe
Q 035988 278 V-STINRPNLFYMVREKS-----SVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQR------GISADYY 345 (692)
Q Consensus 278 ~-~~~~r~~l~~~v~~~~-----~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~------g~~v~~~ 345 (692)
. ..+.++ ....+.... .........+...+......++++||||+|++.|+.++..|++. +..+..+
T Consensus 242 v~~~~~k~-~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~h 320 (876)
T PRK13767 242 VDARFVKP-FDIKVISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAH 320 (876)
T ss_pred EccCCCcc-ceEEEeccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeee
Confidence 2 222221 111111100 01111223333444433335789999999999999999999873 4679999
Q ss_pred ccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCC-CCCCeeEeecCCC-C
Q 035988 346 HADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRD-GLPSECLLFFRPA-D 423 (692)
Q Consensus 346 h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~-G~~g~~i~l~~~~-d 423 (692)
||+|++++|..+++.|++|+++|||||+++++|||+|++++||+++.|.|+.+|+||+||+||. |..+.++++.... |
T Consensus 321 Hg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~~~ 400 (876)
T PRK13767 321 HSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVDRDD 400 (876)
T ss_pred eCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcCchh
Confidence 9999999999999999999999999999999999999999999999999999999999999986 4445555554332 2
Q ss_pred HHHHHHHHhhhhhhhHhHHHHHHHhcCCccchHHHHHhhhCCCc-ccccCCCccchhHHHHHHHHHHHHHHhcCCCccHH
Q 035988 424 VPRQSSMVFYENSGLQNLYDIVRYSQYPLHWNIEKVRLVIFEKL-QQVNLFCMVVLAGHAQCIISLLQDIQDNNQRLTML 502 (692)
Q Consensus 424 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~crr~~ll~~f~~~~-~~C~~~Cd~d~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (692)
... . ..+.+... +.+-+.. ..+ +| . ...++.++.++. .+.++..
T Consensus 401 l~e--~------------~~~~~~~~-----------~~~ie~~~~~~--~~-~--dvl~q~i~~~~~-----~~~~~~~ 445 (876)
T PRK13767 401 LVE--C------------AVLLKKAR-----------EGKIDRVHIPK--NP-L--DVLAQHIVGMAI-----ERPWDIE 445 (876)
T ss_pred HHH--H------------HHHHHHHH-----------hCCCCCCCCCC--Cc-H--HHHHHHHHHHHH-----cCCCCHH
Confidence 110 0 01111110 1111111 111 11 2 246777777654 2578999
Q ss_pred HHHHHHHhcccCCCcccCHHHHHHHHHHHHHc
Q 035988 503 QLVDKMKIKLKEIDSDLKREEIEQLVLQLIID 534 (692)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 534 (692)
.+.+.++.. ....+++.++++.+++.|...
T Consensus 446 ~~~~~~~~~--~~~~~l~~~~~~~~l~~l~~~ 475 (876)
T PRK13767 446 EAYNIVRRA--YPYRDLSDEDFESVLRYLAGD 475 (876)
T ss_pred HHHHHHhcc--CCcccCCHHHHHHHHHHHhcc
Confidence 999999986 467899999999999999765
No 40
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=7.8e-42 Score=399.60 Aligned_cols=321 Identities=22% Similarity=0.250 Sum_probs=256.2
Q ss_pred CCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC------CCEEEEecCCChhHHHHHHHHH---hcCCeEEEEcccHHH
Q 035988 73 FEWDSRADDVRLNVFGIPAYRANQQEIINAVLSG------RDVLVIMAAGGGKSLCYQLPAV---LREGIALVVSPLLSL 143 (692)
Q Consensus 73 ~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g------~dviv~apTGsGKTl~~~lpal---~~~~~~lvi~Pt~~L 143 (692)
++.+......+.+.||| .+||.|.+||+.++++ +|.+++||||+|||++|++|++ ..+..++|++||++|
T Consensus 434 ~~~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~L 512 (926)
T TIGR00580 434 FPPDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLL 512 (926)
T ss_pred CCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHH
Confidence 44556677778888999 5999999999999985 7999999999999999998876 457899999999999
Q ss_pred HHHHHHHHHHc----CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEe
Q 035988 144 IQDQVMCLAAL----GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISID 219 (692)
Q Consensus 144 ~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVID 219 (692)
+.|+++.+++. ++++..+++..+..+.......+..+ .++|+|+||..+. +...+.+++++|||
T Consensus 513 A~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g--~~dIVIGTp~ll~----------~~v~f~~L~llVID 580 (926)
T TIGR00580 513 AQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASG--KIDILIGTHKLLQ----------KDVKFKDLGLLIID 580 (926)
T ss_pred HHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcC--CceEEEchHHHhh----------CCCCcccCCEEEee
Confidence 99999998864 67888899988888888888878776 7999999996332 23356789999999
Q ss_pred CcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEec-cCCCCcceEEEeeccCcch
Q 035988 220 EAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVS-TINRPNLFYMVREKSSVGK 298 (692)
Q Consensus 220 EaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~r~~l~~~v~~~~~~~~ 298 (692)
|+|+ ||...+ ..+....+++++++||||+.+.+... ...+..+...+.. +.++..+...+.... ..
T Consensus 581 Eahr---fgv~~~------~~L~~~~~~~~vL~~SATpiprtl~~--~l~g~~d~s~I~~~p~~R~~V~t~v~~~~--~~ 647 (926)
T TIGR00580 581 EEQR---FGVKQK------EKLKELRTSVDVLTLSATPIPRTLHM--SMSGIRDLSIIATPPEDRLPVRTFVMEYD--PE 647 (926)
T ss_pred cccc---cchhHH------HHHHhcCCCCCEEEEecCCCHHHHHH--HHhcCCCcEEEecCCCCccceEEEEEecC--HH
Confidence 9999 442222 24555567889999999998876553 3334444444332 334444443333221 11
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHC--CCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccc
Q 035988 299 VVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQR--GISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFG 376 (692)
Q Consensus 299 ~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~--g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~ 376 (692)
.....+...+ ..+++++|||++++.++.+++.|++. ++++..+||+|++++|..++++|++|+++|||||++++
T Consensus 648 ~i~~~i~~el----~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie 723 (926)
T TIGR00580 648 LVREAIRREL----LRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIE 723 (926)
T ss_pred HHHHHHHHHH----HcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhh
Confidence 2223333333 26789999999999999999999985 78899999999999999999999999999999999999
Q ss_pred cccCCCCccEEEEeCCCC-CHHHHHHHHhhcCCCCCCCeeEeecCCCC
Q 035988 377 MGINKPDVRFVIHHSLSK-SVETYYQESGRAGRDGLPSECLLFFRPAD 423 (692)
Q Consensus 377 ~GIDip~v~~VI~~~~P~-s~~~y~Qr~GRagR~G~~g~~i~l~~~~d 423 (692)
+|||+|++++||+++.|. +..+|+||+||+||.|+.|.|++++.+.+
T Consensus 724 ~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~ 771 (926)
T TIGR00580 724 TGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQK 771 (926)
T ss_pred cccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCcc
Confidence 999999999999999975 78899999999999999999999997654
No 41
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.8e-43 Score=373.63 Aligned_cols=362 Identities=19% Similarity=0.234 Sum_probs=278.8
Q ss_pred CCccCCCCCcccccccc---CCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc-
Q 035988 55 PIQYGGSSSTAVENWSG---TFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR- 130 (692)
Q Consensus 55 ~~~~g~~~~~~~~~w~~---~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~- 130 (692)
+..-|...|.++..|.. .+..+..+++.+.. .||+.|+|+|.+|||.++.++|++++||||+|||++|.+|++.+
T Consensus 120 ~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~-~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L 198 (593)
T KOG0344|consen 120 INVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQE-LGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHL 198 (593)
T ss_pred eeccCCCCCCccccccccchhhhhcHHHHHhHhh-CCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHH
Confidence 34456677999998886 56777888888875 49999999999999999999999999999999999999998854
Q ss_pred ----------CCeEEEEcccHHHHHHHHHHHHHcCCC------EEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhh
Q 035988 131 ----------EGIALVVSPLLSLIQDQVMCLAALGIP------AHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKI 194 (692)
Q Consensus 131 ----------~~~~lvi~Pt~~L~~q~~~~l~~~gi~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l 194 (692)
+-+++|++|+++|+.|.+.++.++.+. ++.+............ +.. ..++++++||.++
T Consensus 199 ~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~---~~~--~k~dili~TP~ri 273 (593)
T KOG0344|consen 199 KDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAF---LSD--EKYDILISTPMRI 273 (593)
T ss_pred HHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccch---hHH--HHHHHHhcCHHHH
Confidence 248999999999999999999998532 2222222222211111 111 1689999999976
Q ss_pred hchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccce
Q 035988 195 SKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKC 274 (692)
Q Consensus 195 ~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~ 274 (692)
.. .+..-.-...+..+.++|+||||.+.+. ..|..+...+-..+.. |++.+-+||||.+..+.+...........
T Consensus 274 ~~---~~~~~~~~idl~~V~~lV~dEaD~lfe~-~~f~~Qla~I~sac~s-~~i~~a~FSat~~~~VEE~~~~i~~~~~~ 348 (593)
T KOG0344|consen 274 VG---LLGLGKLNIDLSKVEWLVVDEADLLFEP-EFFVEQLADIYSACQS-PDIRVALFSATISVYVEEWAELIKSDLKR 348 (593)
T ss_pred HH---HhcCCCccchhheeeeEeechHHhhhCh-hhHHHHHHHHHHHhcC-cchhhhhhhccccHHHHHHHHHhhcccee
Confidence 42 1111111135678999999999999876 1277777664433333 67777899999999888877666554443
Q ss_pred EEEeccCC---CCcceEEEeeccCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHH-HHCCCceeEeccCCC
Q 035988 275 IKFVSTIN---RPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQEL-RQRGISADYYHADMD 350 (692)
Q Consensus 275 ~~~~~~~~---r~~l~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L-~~~g~~v~~~h~~~~ 350 (692)
+.+..... +-........ ....++-.+.+.+... -..+++||+.+.+.|.+|+..| .-.++.+.++||..+
T Consensus 349 vivg~~~sa~~~V~QelvF~g---se~~K~lA~rq~v~~g--~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~ 423 (593)
T KOG0344|consen 349 VIVGLRNSANETVDQELVFCG---SEKGKLLALRQLVASG--FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERS 423 (593)
T ss_pred EEEecchhHhhhhhhhheeee---cchhHHHHHHHHHhcc--CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccc
Confidence 33322111 1111111111 1234456777777766 5679999999999999999999 666999999999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHHHHHHH
Q 035988 351 INAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSM 430 (692)
Q Consensus 351 ~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~~~~l 430 (692)
+.+|.+++++|+.|+++|||||+++++|||+.+++.||+||+|.+..+|+||+||+||+|+.|.+|+||+..|.+.++.+
T Consensus 424 ~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~i 503 (593)
T KOG0344|consen 424 QKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSI 503 (593)
T ss_pred hhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998887765
Q ss_pred Hh
Q 035988 431 VF 432 (692)
Q Consensus 431 ~~ 432 (692)
..
T Consensus 504 ae 505 (593)
T KOG0344|consen 504 AE 505 (593)
T ss_pred HH
Confidence 43
No 42
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=5.8e-41 Score=392.84 Aligned_cols=324 Identities=23% Similarity=0.327 Sum_probs=248.8
Q ss_pred CCCCcHHHHHHHHHhcCCCCCCHHHHHHHHH-HHcCCCEEEEecCCChhHHHHHHHHHh---cCCeEEEEcccHHHHHHH
Q 035988 72 TFEWDSRADDVRLNVFGIPAYRANQQEIINA-VLSGRDVLVIMAAGGGKSLCYQLPAVL---REGIALVVSPLLSLIQDQ 147 (692)
Q Consensus 72 ~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~-il~g~dviv~apTGsGKTl~~~lpal~---~~~~~lvi~Pt~~L~~q~ 147 (692)
.+++++.+.+.+++ .||..|+|+|.++++. +++|+|++++||||||||++|.+|++. .++++|||+|+++|+.|+
T Consensus 5 ~l~lp~~~~~~l~~-~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~~kal~i~P~raLa~q~ 83 (737)
T PRK02362 5 ELPLPEGVIEFYEA-EGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLRALASEK 83 (737)
T ss_pred hcCCCHHHHHHHHh-CCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHH
Confidence 56788899999986 5999999999999998 778999999999999999999998765 478999999999999999
Q ss_pred HHHHHHc---CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccc
Q 035988 148 VMCLAAL---GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCC 224 (692)
Q Consensus 148 ~~~l~~~---gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l 224 (692)
++.++++ |+++..++|+...... . ....+|+|+|||++....+ .....+.+++++||||+|.+
T Consensus 84 ~~~~~~~~~~g~~v~~~tGd~~~~~~-----~----l~~~~IiV~Tpek~~~llr-----~~~~~l~~v~lvViDE~H~l 149 (737)
T PRK02362 84 FEEFERFEELGVRVGISTGDYDSRDE-----W----LGDNDIIVATSEKVDSLLR-----NGAPWLDDITCVVVDEVHLI 149 (737)
T ss_pred HHHHHHhhcCCCEEEEEeCCcCcccc-----c----cCCCCEEEECHHHHHHHHh-----cChhhhhhcCEEEEECcccc
Confidence 9999887 8899999988754321 0 1267999999998753211 11224568999999999999
Q ss_pred cccCCCchHHHHHH-HHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEeccCCCCc-ceEEEe--------e--
Q 035988 225 SQWGHDFRPDYKNL-GILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPN-LFYMVR--------E-- 292 (692)
Q Consensus 225 ~~~g~~fr~~~~~l-~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~-l~~~v~--------~-- 292 (692)
.+.+ +.+.+..+ ..++...++.++++||||++. ..++.++++... + .+..||. +...+. .
T Consensus 150 ~d~~--rg~~le~il~rl~~~~~~~qii~lSATl~n--~~~la~wl~~~~---~-~~~~rpv~l~~~v~~~~~~~~~~~~ 221 (737)
T PRK02362 150 DSAN--RGPTLEVTLAKLRRLNPDLQVVALSATIGN--ADELADWLDAEL---V-DSEWRPIDLREGVFYGGAIHFDDSQ 221 (737)
T ss_pred CCCc--chHHHHHHHHHHHhcCCCCcEEEEcccCCC--HHHHHHHhCCCc---c-cCCCCCCCCeeeEecCCeecccccc
Confidence 8644 55555442 445556688999999999975 356777776432 1 1111111 000000 0
Q ss_pred c--c-CcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCC------------------------------
Q 035988 293 K--S-SVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRG------------------------------ 339 (692)
Q Consensus 293 ~--~-~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g------------------------------ 339 (692)
. . .........+.+.+ ..++++||||+|++.|+.++..|....
T Consensus 222 ~~~~~~~~~~~~~~~~~~~----~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 297 (737)
T PRK02362 222 REVEVPSKDDTLNLVLDTL----EEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKD 297 (737)
T ss_pred ccCCCccchHHHHHHHHHH----HcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHH
Confidence 0 0 00112233333333 267899999999999999988886431
Q ss_pred ------CceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEE----eC-----CCCCHHHHHHHHh
Q 035988 340 ------ISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIH----HS-----LSKSVETYYQESG 404 (692)
Q Consensus 340 ------~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~----~~-----~P~s~~~y~Qr~G 404 (692)
..+.++||+|++++|..+++.|++|.++|||||+++++|+|+|++++||+ |+ .|.+..+|.||+|
T Consensus 298 L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~G 377 (737)
T PRK02362 298 LADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAG 377 (737)
T ss_pred HHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhh
Confidence 35789999999999999999999999999999999999999999999997 65 6889999999999
Q ss_pred hcCCCCCC--CeeEeecCCC
Q 035988 405 RAGRDGLP--SECLLFFRPA 422 (692)
Q Consensus 405 RagR~G~~--g~~i~l~~~~ 422 (692)
||||.|.. |.|+++....
T Consensus 378 RAGR~g~d~~G~~ii~~~~~ 397 (737)
T PRK02362 378 RAGRPGLDPYGEAVLLAKSY 397 (737)
T ss_pred cCCCCCCCCCceEEEEecCc
Confidence 99999976 8999998654
No 43
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=4.1e-41 Score=380.67 Aligned_cols=401 Identities=21% Similarity=0.246 Sum_probs=306.8
Q ss_pred CCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc---C--------CeEEEEcccHH
Q 035988 74 EWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR---E--------GIALVVSPLLS 142 (692)
Q Consensus 74 ~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~---~--------~~~lvi~Pt~~ 142 (692)
-+++.+.+.+++. |.+|||.|.+||+.+.+|++++++||||||||+++.+|++.. . -.+|+|+|+++
T Consensus 7 ~l~~~v~~~~~~~--~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkA 84 (814)
T COG1201 7 ILDPRVREWFKRK--FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKA 84 (814)
T ss_pred hcCHHHHHHHHHh--cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHH
Confidence 3667888888876 889999999999999999999999999999999999998732 1 36999999999
Q ss_pred HHHHHHHHHHH----cCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhc---hHHHHHHHHhhhhcCCceE
Q 035988 143 LIQDQVMCLAA----LGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISK---SKRFMSKLEKCHHAGRLSL 215 (692)
Q Consensus 143 L~~q~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~---~~~~~~~l~~~~~~~~l~~ 215 (692)
|.+|+...+.. +|+++.+.+|+++..++..... ..++|+++|||+|.. +.++.+ .+.++.+
T Consensus 85 Ln~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~------~PPdILiTTPEsL~lll~~~~~r~------~l~~vr~ 152 (814)
T COG1201 85 LNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLK------NPPHILITTPESLAILLNSPKFRE------LLRDVRY 152 (814)
T ss_pred HHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccC------CCCcEEEeChhHHHHHhcCHHHHH------HhcCCcE
Confidence 99999988875 5999999999999887655433 389999999999853 222222 3468999
Q ss_pred EEEeCccccc--ccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccc-eEEEeccCCCCcceEEEee
Q 035988 216 ISIDEAHCCS--QWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRK-CIKFVSTINRPNLFYMVRE 292 (692)
Q Consensus 216 iVIDEaH~l~--~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~-~~~~~~~~~r~~l~~~v~~ 292 (692)
+||||.|.+. ..|....- .|..+....++.+.|++|||..+ ...+.++|.... ...+.......+..+.+..
T Consensus 153 VIVDEiHel~~sKRG~~Lsl---~LeRL~~l~~~~qRIGLSATV~~--~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~ 227 (814)
T COG1201 153 VIVDEIHALAESKRGVQLAL---SLERLRELAGDFQRIGLSATVGP--PEEVAKFLVGFGDPCEIVDVSAAKKLEIKVIS 227 (814)
T ss_pred EEeehhhhhhccccchhhhh---hHHHHHhhCcccEEEeehhccCC--HHHHHHHhcCCCCceEEEEcccCCcceEEEEe
Confidence 9999999985 45643333 33455565567889999999985 577889988765 3333333222333333332
Q ss_pred ccCc-------chHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCC-CceeEeccCCCHHHHHHHHHHHhcC
Q 035988 293 KSSV-------GKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRG-ISADYYHADMDINAREKVHMRWSKN 364 (692)
Q Consensus 293 ~~~~-------~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g-~~v~~~h~~~~~~eR~~~~~~f~~g 364 (692)
.... ....+..+.++++ ...++|||+||+..+|.++..|++.+ ..+..+||+++.+.|..+.++|++|
T Consensus 228 p~~~~~~~~~~~~~~~~~i~~~v~----~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G 303 (814)
T COG1201 228 PVEDLIYDEELWAALYERIAELVK----KHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEG 303 (814)
T ss_pred cCCccccccchhHHHHHHHHHHHh----hcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcC
Confidence 2211 1234556666665 44699999999999999999999986 8999999999999999999999999
Q ss_pred CCcEEEeccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcC-CCCCCCeeEeecCCCCHHHHHHHHhhhhhhhHhHHH
Q 035988 365 KLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAG-RDGLPSECLLFFRPADVPRQSSMVFYENSGLQNLYD 443 (692)
Q Consensus 365 ~~~ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRag-R~G~~g~~i~l~~~~d~~~~~~l~~~~~~~~~~l~~ 443 (692)
+++++|||+.++.|||+.+++.|||++.|+++..+.||+||+| |.|..+..+++.... ...+.
T Consensus 304 ~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r-~dllE--------------- 367 (814)
T COG1201 304 ELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAEDR-DDLLE--------------- 367 (814)
T ss_pred CceEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecCH-HHHHH---------------
Confidence 9999999999999999999999999999999999999999999 567778887776542 11111
Q ss_pred HHHHhcCCccchHHHHHhhhCCCc-----ccccCCCccchhHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhcccCCCcc
Q 035988 444 IVRYSQYPLHWNIEKVRLVIFEKL-----QQVNLFCMVVLAGHAQCIISLLQDIQDNNQRLTMLQLVDKMKIKLKEIDSD 518 (692)
Q Consensus 444 ~~~~~~~~~~crr~~ll~~f~~~~-----~~C~~~Cd~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (692)
|.=..-..+-|.-. .+| ....|+.++.++-. ..+.+..+.+.++.. ....+
T Consensus 368 ----------~~vi~~~a~~g~le~~~i~~~~-------LDVLaq~ivg~~~~-----~~~~~~~~y~~vrra--ypy~~ 423 (814)
T COG1201 368 ----------CLVLADLALEGKLERIKIPKNP-------LDVLAQQIVGMALE-----KVWEVEEAYRVVRRA--YPYAD 423 (814)
T ss_pred ----------HHHHHHHHHhCCcccCCCCCcc-------hhHHHHHHHHHHhh-----CcCCHHHHHHHHHhc--ccccc
Confidence 21111111111111 233 33578888887653 389999999999986 45789
Q ss_pred cCHHHHHHHHHHHHH--cCcc
Q 035988 519 LKREEIEQLVLQLII--DRVL 537 (692)
Q Consensus 519 ~~~~~~~~~i~~l~~--~~~l 537 (692)
++.++++.++++|.. .+|+
T Consensus 424 L~~e~f~~v~~~l~~~~~~~~ 444 (814)
T COG1201 424 LSREDFRLVLRYLAGEKNVYA 444 (814)
T ss_pred CCHHHHHHHHHHHhhccccee
Confidence 999999999999999 5555
No 44
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=7.2e-40 Score=390.86 Aligned_cols=320 Identities=23% Similarity=0.233 Sum_probs=250.2
Q ss_pred CCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC------CCEEEEecCCChhHHHHHHHHH---hcCCeEEEEcccHHH
Q 035988 73 FEWDSRADDVRLNVFGIPAYRANQQEIINAVLSG------RDVLVIMAAGGGKSLCYQLPAV---LREGIALVVSPLLSL 143 (692)
Q Consensus 73 ~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g------~dviv~apTGsGKTl~~~lpal---~~~~~~lvi~Pt~~L 143 (692)
++.+..........|+| .+|+.|.+||+.++.+ +|++++||||+|||.+|+.+++ ..+..++|++||++|
T Consensus 583 ~~~~~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eL 661 (1147)
T PRK10689 583 FKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLL 661 (1147)
T ss_pred CCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHH
Confidence 45556667777778999 7999999999999987 8999999999999999887764 447899999999999
Q ss_pred HHHHHHHHHHc----CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEe
Q 035988 144 IQDQVMCLAAL----GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISID 219 (692)
Q Consensus 144 ~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVID 219 (692)
+.|+++.+++. ++++..+++..+..++...+..+..+ .++|+|+||+.+. ....+.+++++|||
T Consensus 662 A~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g--~~dIVVgTp~lL~----------~~v~~~~L~lLVID 729 (1147)
T PRK10689 662 AQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEG--KIDILIGTHKLLQ----------SDVKWKDLGLLIVD 729 (1147)
T ss_pred HHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhC--CCCEEEECHHHHh----------CCCCHhhCCEEEEe
Confidence 99999998863 57788889888888877777777665 7999999997542 12234689999999
Q ss_pred CcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEecc-CCCCcceEEEeeccCcch
Q 035988 220 EAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVST-INRPNLFYMVREKSSVGK 298 (692)
Q Consensus 220 EaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~-~~r~~l~~~v~~~~~~~~ 298 (692)
|+|++ | +.. ...++...+++++++||||+.+.+...... ++.++..+..+ ..+..+...+.... ..
T Consensus 730 Eahrf---G--~~~----~e~lk~l~~~~qvLl~SATpiprtl~l~~~--gl~d~~~I~~~p~~r~~v~~~~~~~~--~~ 796 (1147)
T PRK10689 730 EEHRF---G--VRH----KERIKAMRADVDILTLTATPIPRTLNMAMS--GMRDLSIIATPPARRLAVKTFVREYD--SL 796 (1147)
T ss_pred chhhc---c--hhH----HHHHHhcCCCCcEEEEcCCCCHHHHHHHHh--hCCCcEEEecCCCCCCCceEEEEecC--cH
Confidence 99994 5 221 234555667899999999999887665444 34444444332 23333332222211 11
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHC--CCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccc
Q 035988 299 VVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQR--GISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFG 376 (692)
Q Consensus 299 ~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~--g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~ 376 (692)
.....+...+ ..+++++|||++++.++.+++.|.+. +.++..+||+|++++|..++.+|++|+++|||||++++
T Consensus 797 ~~k~~il~el----~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIie 872 (1147)
T PRK10689 797 VVREAILREI----LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIE 872 (1147)
T ss_pred HHHHHHHHHH----hcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhh
Confidence 1222232222 25788999999999999999999987 78899999999999999999999999999999999999
Q ss_pred cccCCCCccEEEEeCCC-CCHHHHHHHHhhcCCCCCCCeeEeecCCC
Q 035988 377 MGINKPDVRFVIHHSLS-KSVETYYQESGRAGRDGLPSECLLFFRPA 422 (692)
Q Consensus 377 ~GIDip~v~~VI~~~~P-~s~~~y~Qr~GRagR~G~~g~~i~l~~~~ 422 (692)
+|||+|++++||..+.. .++.+|+|++||+||.|+.|.|++++...
T Consensus 873 rGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~ 919 (1147)
T PRK10689 873 TGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 919 (1147)
T ss_pred cccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCCC
Confidence 99999999999954443 35678999999999999999999998654
No 45
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-41 Score=339.58 Aligned_cols=337 Identities=17% Similarity=0.263 Sum_probs=268.8
Q ss_pred ccccccccCCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC--CCEEEEecCCChhHHHHHHHHHhc------CCeEE
Q 035988 64 TAVENWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSG--RDVLVIMAAGGGKSLCYQLPAVLR------EGIAL 135 (692)
Q Consensus 64 ~~~~~w~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g--~dviv~apTGsGKTl~~~lpal~~------~~~~l 135 (692)
-.+.+|. .+.+.+++++.+.. ++|..|+.+|..++|.+|.. +++|+++..|+|||.||.|.+|.+ -+.++
T Consensus 87 yS~ksFe-eL~LkPellkgly~-M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~i 164 (477)
T KOG0332|consen 87 YSAKSFE-ELRLKPELLKGLYA-MKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCI 164 (477)
T ss_pred cccccHH-hhCCCHHHHhHHHH-hccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCce
Confidence 3444555 78899999999985 79999999999999999975 789999999999999999998865 47889
Q ss_pred EEcccHHHHHHHHHHHHHcCCC----EEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcC
Q 035988 136 VVSPLLSLIQDQVMCLAALGIP----AHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAG 211 (692)
Q Consensus 136 vi~Pt~~L~~q~~~~l~~~gi~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~ 211 (692)
.|+|+++|+.|..+.+.+.|-. +.+...+....... .-..+|+|+||+.+.+. +..+ +.+.+.
T Consensus 165 CLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG~---------~i~eqIviGTPGtv~Dl---m~kl-k~id~~ 231 (477)
T KOG0332|consen 165 CLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRGN---------KLTEQIVIGTPGTVLDL---MLKL-KCIDLE 231 (477)
T ss_pred eeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccCC---------cchhheeeCCCccHHHH---HHHH-HhhChh
Confidence 9999999999999999988643 33333222111101 11468999999987642 2221 344567
Q ss_pred CceEEEEeCcccccc-cCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEeccC-CCCcc--e
Q 035988 212 RLSLISIDEAHCCSQ-WGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTI-NRPNL--F 287 (692)
Q Consensus 212 ~l~~iVIDEaH~l~~-~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~-~r~~l--~ 287 (692)
.+..+|+|||+.+.+ .| |.+.-.. ..+...++.++++||||....+.....+.+..++.+.+.... .-.++ +
T Consensus 232 kikvfVlDEAD~Mi~tqG--~~D~S~r--I~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQl 307 (477)
T KOG0332|consen 232 KIKVFVLDEADVMIDTQG--FQDQSIR--IMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQL 307 (477)
T ss_pred hceEEEecchhhhhhccc--ccccchh--hhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhh
Confidence 899999999999874 44 6665544 333344599999999999999999999988887776665432 22232 3
Q ss_pred EEEeeccCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCc
Q 035988 288 YMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQ 367 (692)
Q Consensus 288 ~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ 367 (692)
|..+.. ...+++.|.++..-. .-++.||||.|++.+..++..|...|..+..+||+|.-++|..+++.|+.|..+
T Consensus 308 yv~C~~---~~~K~~~l~~lyg~~--tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~k 382 (477)
T KOG0332|consen 308 YVLCAC---RDDKYQALVNLYGLL--TIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEK 382 (477)
T ss_pred eeeccc---hhhHHHHHHHHHhhh--hhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcce
Confidence 444433 345566666644322 668899999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccccCCCCccEEEEeCCCC------CHHHHHHHHhhcCCCCCCCeeEeecCCCCH
Q 035988 368 VIVGTVAFGMGINKPDVRFVIHHSLSK------SVETYYQESGRAGRDGLPSECLLFFRPADV 424 (692)
Q Consensus 368 ILVaT~~~~~GIDip~v~~VI~~~~P~------s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~ 424 (692)
|||+|++++||||++.|+.||+||+|- +.++|+||+||+||.|+.|.++-|+..++.
T Consensus 383 VLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s 445 (477)
T KOG0332|consen 383 VLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDS 445 (477)
T ss_pred EEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCc
Confidence 999999999999999999999999995 899999999999999999999999877653
No 46
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=5.9e-40 Score=379.17 Aligned_cols=315 Identities=20% Similarity=0.291 Sum_probs=247.3
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHcC------CCEEEEecCCChhHHHHHHHHHh---cCCeEEEEcccHHHHHHH
Q 035988 77 SRADDVRLNVFGIPAYRANQQEIINAVLSG------RDVLVIMAAGGGKSLCYQLPAVL---REGIALVVSPLLSLIQDQ 147 (692)
Q Consensus 77 ~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g------~dviv~apTGsGKTl~~~lpal~---~~~~~lvi~Pt~~L~~q~ 147 (692)
..+.+.+.+.++| .||++|.++|+.+.++ .+.+++||||||||++|++|++. .+..++|++||++|+.|+
T Consensus 248 ~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~ 326 (681)
T PRK10917 248 GELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQH 326 (681)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHH
Confidence 4556666777899 6999999999999986 47999999999999999998864 467999999999999999
Q ss_pred HHHHHHc----CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCccc
Q 035988 148 VMCLAAL----GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHC 223 (692)
Q Consensus 148 ~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~ 223 (692)
++.++++ |+++..++|+.+..++...+..+..+ .++|+|+||..+... ..+.+++++||||+|+
T Consensus 327 ~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g--~~~IvVgT~~ll~~~----------v~~~~l~lvVIDE~Hr 394 (681)
T PRK10917 327 YENLKKLLEPLGIRVALLTGSLKGKERREILEAIASG--EADIVIGTHALIQDD----------VEFHNLGLVIIDEQHR 394 (681)
T ss_pred HHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCC--CCCEEEchHHHhccc----------chhcccceEEEechhh
Confidence 9998865 68999999999988888888888777 899999999876431 2346899999999999
Q ss_pred ccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEe-ccCCCCcceEEEeeccCcchHHHH
Q 035988 224 CSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFV-STINRPNLFYMVREKSSVGKVVID 302 (692)
Q Consensus 224 l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~-~~~~r~~l~~~v~~~~~~~~~~~~ 302 (692)
+ |...+. .+.....+.++++||||+.+..... ...+..+...+. .+..+..+...+.... .. +
T Consensus 395 f---g~~qr~------~l~~~~~~~~iL~~SATp~prtl~~--~~~g~~~~s~i~~~p~~r~~i~~~~~~~~-~~----~ 458 (681)
T PRK10917 395 F---GVEQRL------ALREKGENPHVLVMTATPIPRTLAM--TAYGDLDVSVIDELPPGRKPITTVVIPDS-RR----D 458 (681)
T ss_pred h---hHHHHH------HHHhcCCCCCEEEEeCCCCHHHHHH--HHcCCCceEEEecCCCCCCCcEEEEeCcc-cH----H
Confidence 4 422222 3334444678999999998765442 223333332222 2333444444333322 22 2
Q ss_pred HHHHHHHHhCCCCCceEEEEeccc--------hHHHHHHHHHHC--CCceeEeccCCCHHHHHHHHHHHhcCCCcEEEec
Q 035988 303 EIAKYIQESYPNSESGIVYCFSRK--------ECEQVAQELRQR--GISADYYHADMDINAREKVHMRWSKNKLQVIVGT 372 (692)
Q Consensus 303 ~l~~~l~~~~~~~~~~IIf~~s~~--------~~e~l~~~L~~~--g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT 372 (692)
.+.+.+......+++++|||++++ .++.+++.|.+. ++++..+||+|++++|..++++|++|+++|||||
T Consensus 459 ~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT 538 (681)
T PRK10917 459 EVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVAT 538 (681)
T ss_pred HHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEC
Confidence 333444433347889999999654 456778888765 5789999999999999999999999999999999
Q ss_pred cccccccCCCCccEEEEeCCCC-CHHHHHHHHhhcCCCCCCCeeEeecC
Q 035988 373 VAFGMGINKPDVRFVIHHSLSK-SVETYYQESGRAGRDGLPSECLLFFR 420 (692)
Q Consensus 373 ~~~~~GIDip~v~~VI~~~~P~-s~~~y~Qr~GRagR~G~~g~~i~l~~ 420 (692)
+++++|||+|++++||+++.|. +...|.|++||+||.|.+|.|+++++
T Consensus 539 ~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 539 TVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred cceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 9999999999999999999997 68899999999999999999999995
No 47
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=1.3e-40 Score=405.37 Aligned_cols=335 Identities=16% Similarity=0.297 Sum_probs=261.1
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc---CCeEEEEcccHHHHHHHHHHHHHc
Q 035988 78 RADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR---EGIALVVSPLLSLIQDQVMCLAAL 154 (692)
Q Consensus 78 ~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~---~~~~lvi~Pt~~L~~q~~~~l~~~ 154 (692)
++.+.+++.+|| .|+++|.++|+.+++|+|++++||||+|||++++++++.. +.++|||+||++|+.|+++.++.+
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l 145 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIESF 145 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHH
Confidence 456677778999 6999999999999999999999999999999888777644 568999999999999999999984
Q ss_pred ------CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccC
Q 035988 155 ------GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWG 228 (692)
Q Consensus 155 ------gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g 228 (692)
++.+..++|+.+..++...+..+..+ .++|+|+||++|.. .+.. + .. .+++++||||||++++||
T Consensus 146 ~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g--~~dILV~TPgrL~~--~~~~-l---~~-~~i~~iVVDEAD~ml~~~ 216 (1638)
T PRK14701 146 CEKANLDVRLVYYHSNLRKKEKEEFLERIENG--DFDILVTTAQFLAR--NFPE-M---KH-LKFDFIFVDDVDAFLKAS 216 (1638)
T ss_pred HhhcCCceeEEEEeCCCCHHHHHHHHHHHhcC--CCCEEEECCchhHH--hHHH-H---hh-CCCCEEEEECceeccccc
Confidence 46677889999888777777777665 79999999997753 2211 1 11 579999999999999998
Q ss_pred C---------CchHHHHH----H-------------------HHHHhhCCCCC--EEEEecccchhhHHHHHHHhcccce
Q 035988 229 H---------DFRPDYKN----L-------------------GILKTQFPDVP--MMALTATATQKVQNDLMEMLHIRKC 274 (692)
Q Consensus 229 ~---------~fr~~~~~----l-------------------~~l~~~~~~~~--~i~lSAT~~~~~~~~i~~~l~~~~~ 274 (692)
+ +|++++.. + ......+|..+ .+++|||+++. .++...+ ...
T Consensus 217 knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r--~~~~~l~--~~~ 292 (1638)
T PRK14701 217 KNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAK--GDRVKLY--REL 292 (1638)
T ss_pred cccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCch--hHHHHHh--hcC
Confidence 7 79988864 1 11112334433 46789998863 2333333 233
Q ss_pred EEEeccCCCCcceEEEeeccCcchHHHHHHHHHHHHhCCCCCceEEEEeccch---HHHHHHHHHHCCCceeEeccCCCH
Q 035988 275 IKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKE---CEQVAQELRQRGISADYYHADMDI 351 (692)
Q Consensus 275 ~~~~~~~~r~~l~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~---~e~l~~~L~~~g~~v~~~h~~~~~ 351 (692)
..+...+.++++...+.............+..++... +..+||||+|++. |+.+++.|...|+++..+||+
T Consensus 293 l~f~v~~~~~~lr~i~~~yi~~~~~~k~~L~~ll~~~---g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~--- 366 (1638)
T PRK14701 293 LGFEVGSGRSALRNIVDVYLNPEKIIKEHVRELLKKL---GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK--- 366 (1638)
T ss_pred eEEEecCCCCCCCCcEEEEEECCHHHHHHHHHHHHhC---CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch---
Confidence 4455555555543322221101111124566777643 5689999999886 589999999999999999995
Q ss_pred HHHHHHHHHHhcCCCcEEEecc----ccccccCCCC-ccEEEEeCCCC---CHHHHHHHH-------------hhcCCCC
Q 035988 352 NAREKVHMRWSKNKLQVIVGTV----AFGMGINKPD-VRFVIHHSLSK---SVETYYQES-------------GRAGRDG 410 (692)
Q Consensus 352 ~eR~~~~~~f~~g~~~ILVaT~----~~~~GIDip~-v~~VI~~~~P~---s~~~y~Qr~-------------GRagR~G 410 (692)
|...+++|++|+++|||||+ +++||||+|+ |++|||||+|+ |++.|+|.. ||+||+|
T Consensus 367 --R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g 444 (1638)
T PRK14701 367 --NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEG 444 (1638)
T ss_pred --HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccC
Confidence 88999999999999999995 7889999999 99999999999 999999988 9999999
Q ss_pred CCCeeEeecCCCCHHHHHHHHhhh
Q 035988 411 LPSECLLFFRPADVPRQSSMVFYE 434 (692)
Q Consensus 411 ~~g~~i~l~~~~d~~~~~~l~~~~ 434 (692)
.++.+++.+...+...++.++..+
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~l~~~ 468 (1638)
T PRK14701 445 IPIEGVLDVFPEDVEFLRSILKDE 468 (1638)
T ss_pred CcchhHHHhHHHHHHHHHHHhccH
Confidence 999999888888888888887764
No 48
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=1.6e-39 Score=373.27 Aligned_cols=318 Identities=18% Similarity=0.271 Sum_probs=244.6
Q ss_pred CCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC------CCEEEEecCCChhHHHHHHHHHh---cCCeEEEEcccHHHH
Q 035988 74 EWDSRADDVRLNVFGIPAYRANQQEIINAVLSG------RDVLVIMAAGGGKSLCYQLPAVL---REGIALVVSPLLSLI 144 (692)
Q Consensus 74 ~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g------~dviv~apTGsGKTl~~~lpal~---~~~~~lvi~Pt~~L~ 144 (692)
.++......+.+.++| .||+.|.+||+.++.+ .+.+++||||||||++|++|++. .+..++|++||++|+
T Consensus 219 ~~~~~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA 297 (630)
T TIGR00643 219 NPSEELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILA 297 (630)
T ss_pred CCChHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHH
Confidence 3444455555557899 7999999999999976 25899999999999999988764 467999999999999
Q ss_pred HHHHHHHHHc----CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeC
Q 035988 145 QDQVMCLAAL----GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDE 220 (692)
Q Consensus 145 ~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDE 220 (692)
.|+++.++++ |+++..++|+....++...+..+..+ .++|+|+||..+.. ...+.+++++||||
T Consensus 298 ~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g--~~~IiVgT~~ll~~----------~~~~~~l~lvVIDE 365 (630)
T TIGR00643 298 EQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASG--QIHLVVGTHALIQE----------KVEFKRLALVIIDE 365 (630)
T ss_pred HHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCC--CCCEEEecHHHHhc----------cccccccceEEEec
Confidence 9999998865 78999999999988887788877776 89999999996642 12346899999999
Q ss_pred cccccccCCCchHHHHHHHHHHhhCC---CCCEEEEecccchhhHHHHHHHhcccceEEE-eccCCCCcceEEEeeccCc
Q 035988 221 AHCCSQWGHDFRPDYKNLGILKTQFP---DVPMMALTATATQKVQNDLMEMLHIRKCIKF-VSTINRPNLFYMVREKSSV 296 (692)
Q Consensus 221 aH~l~~~g~~fr~~~~~l~~l~~~~~---~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~-~~~~~r~~l~~~v~~~~~~ 296 (692)
+|+ ||...+.. +....+ ..++++||||+.+...... ..+.-....+ ..+..+..+...+.....
T Consensus 366 aH~---fg~~qr~~------l~~~~~~~~~~~~l~~SATp~prtl~l~--~~~~l~~~~i~~~p~~r~~i~~~~~~~~~- 433 (630)
T TIGR00643 366 QHR---FGVEQRKK------LREKGQGGFTPHVLVMSATPIPRTLALT--VYGDLDTSIIDELPPGRKPITTVLIKHDE- 433 (630)
T ss_pred hhh---ccHHHHHH------HHHhcccCCCCCEEEEeCCCCcHHHHHH--hcCCcceeeeccCCCCCCceEEEEeCcch-
Confidence 998 44333322 333333 5679999999987544321 2221111111 122333334333332221
Q ss_pred chHHHHHHHHHHHHhCCCCCceEEEEeccc--------hHHHHHHHHHHC--CCceeEeccCCCHHHHHHHHHHHhcCCC
Q 035988 297 GKVVIDEIAKYIQESYPNSESGIVYCFSRK--------ECEQVAQELRQR--GISADYYHADMDINAREKVHMRWSKNKL 366 (692)
Q Consensus 297 ~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~--------~~e~l~~~L~~~--g~~v~~~h~~~~~~eR~~~~~~f~~g~~ 366 (692)
.+.+...+.+....+.+++|||++++ .++.+++.|.+. ++.+..+||+|++++|..+++.|++|+.
T Consensus 434 ----~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~ 509 (630)
T TIGR00643 434 ----KDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEV 509 (630)
T ss_pred ----HHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 13445555544447889999999764 466778888764 7889999999999999999999999999
Q ss_pred cEEEeccccccccCCCCccEEEEeCCCC-CHHHHHHHHhhcCCCCCCCeeEeecC
Q 035988 367 QVIVGTVAFGMGINKPDVRFVIHHSLSK-SVETYYQESGRAGRDGLPSECLLFFR 420 (692)
Q Consensus 367 ~ILVaT~~~~~GIDip~v~~VI~~~~P~-s~~~y~Qr~GRagR~G~~g~~i~l~~ 420 (692)
+|||||+++++|||+|++++||+++.|. +...|.|++||+||.|..|.|++++.
T Consensus 510 ~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 510 DILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred CEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 9999999999999999999999999997 78999999999999999999999993
No 49
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-41 Score=350.31 Aligned_cols=335 Identities=21% Similarity=0.289 Sum_probs=246.4
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHc---------CCCEEEEecCCChhHHHHHHHHHhc-------CCeEEEEcccHHHHHH
Q 035988 83 RLNVFGIPAYRANQQEIINAVLS---------GRDVLVIMAAGGGKSLCYQLPAVLR-------EGIALVVSPLLSLIQD 146 (692)
Q Consensus 83 l~~~fg~~~~r~~Q~~ai~~il~---------g~dviv~apTGsGKTl~~~lpal~~-------~~~~lvi~Pt~~L~~q 146 (692)
+.+ .+++...|+|..++|.++. .+|+.|.||||||||+||.+|++.. --+++||+||++|+.|
T Consensus 152 l~k-~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~Q 230 (620)
T KOG0350|consen 152 LVK-MAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQ 230 (620)
T ss_pred HHH-hhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHH
Confidence 443 5888999999999999963 5899999999999999999999853 1489999999999999
Q ss_pred HHHHHHHc----CCCEEEEecCCChhHHHHHHHHHHhcC--CCccEEEeChhhhhchHHHHHHHH--hhhhcCCceEEEE
Q 035988 147 QVMCLAAL----GIPAHMLTSTTSKEDEKFIYKALEKGE--GELKMLYVTPEKISKSKRFMSKLE--KCHHAGRLSLISI 218 (692)
Q Consensus 147 ~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~Ili~Tpe~l~~~~~~~~~l~--~~~~~~~l~~iVI 218 (692)
+++.|.++ |+.++.+.|..+....... +.... ...+|+|+||++| ++++. +.+.+.++.++||
T Consensus 231 V~~~f~~~~~~tgL~V~~~sgq~sl~~E~~q---L~~~~~~~~~DIlVaTPGRL------VDHl~~~k~f~Lk~LrfLVI 301 (620)
T KOG0350|consen 231 VYDTFKRLNSGTGLAVCSLSGQNSLEDEARQ---LASDPPECRIDILVATPGRL------VDHLNNTKSFDLKHLRFLVI 301 (620)
T ss_pred HHHHHHHhccCCceEEEecccccchHHHHHH---HhcCCCccccceEEcCchHH------HHhccCCCCcchhhceEEEe
Confidence 99999987 6666667766655433322 32221 1459999999955 45555 4567889999999
Q ss_pred eCcccccccCCCchHHHHHH----------------------------HHHHhh----CCCCCEEEEecccchhhHHHHH
Q 035988 219 DEAHCCSQWGHDFRPDYKNL----------------------------GILKTQ----FPDVPMMALTATATQKVQNDLM 266 (692)
Q Consensus 219 DEaH~l~~~g~~fr~~~~~l----------------------------~~l~~~----~~~~~~i~lSAT~~~~~~~~i~ 266 (692)
||||++.+.. |..++..+ ..+... +|....+++|||++..-.....
T Consensus 302 DEADRll~qs--fQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~ 379 (620)
T KOG0350|consen 302 DEADRLLDQS--FQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKD 379 (620)
T ss_pred chHHHHHHHH--HHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhh
Confidence 9999987532 22221111 111111 2333457888888765443333
Q ss_pred HHhcccceEEEec----cCCCCc-c-eEEEeeccCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHH----
Q 035988 267 EMLHIRKCIKFVS----TINRPN-L-FYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELR---- 336 (692)
Q Consensus 267 ~~l~~~~~~~~~~----~~~r~~-l-~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~---- 336 (692)
-.++.+....... -+.-|. + .+.+..... .+--.+...|... +..++|+|++|...+..++..|+
T Consensus 380 l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~---~kpl~~~~lI~~~--k~~r~lcf~~S~~sa~Rl~~~L~v~~~ 454 (620)
T KOG0350|consen 380 LTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPK---FKPLAVYALITSN--KLNRTLCFVNSVSSANRLAHVLKVEFC 454 (620)
T ss_pred hhcCCCceEEeecccceeeecChhhhhceeecccc---cchHhHHHHHHHh--hcceEEEEecchHHHHHHHHHHHHHhc
Confidence 2334442222221 111111 1 112222211 1123455566554 78899999999999999999987
Q ss_pred HCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeE
Q 035988 337 QRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECL 416 (692)
Q Consensus 337 ~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i 416 (692)
.....+-.|.|+++.+.|...++.|..|++++|||+++++||||+.+|++||+||+|.+..+|+||+||++|+|+.|.|+
T Consensus 455 ~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~ 534 (620)
T KOG0350|consen 455 SDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAI 534 (620)
T ss_pred cccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEE
Confidence 33667778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCHHHHHHHHhhh
Q 035988 417 LFFRPADVPRQSSMVFYE 434 (692)
Q Consensus 417 ~l~~~~d~~~~~~l~~~~ 434 (692)
.+....+.....+++...
T Consensus 535 tll~~~~~r~F~klL~~~ 552 (620)
T KOG0350|consen 535 TLLDKHEKRLFSKLLKKT 552 (620)
T ss_pred EeeccccchHHHHHHHHh
Confidence 999999888777776544
No 50
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=1.2e-40 Score=353.00 Aligned_cols=342 Identities=17% Similarity=0.233 Sum_probs=270.8
Q ss_pred CccccccccCCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc------CCeEEE
Q 035988 63 STAVENWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR------EGIALV 136 (692)
Q Consensus 63 ~~~~~~w~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~------~~~~lv 136 (692)
+.....|.+. .+...++.-|+.. +|..|+++|..|||+++.+-|+|++|..|+|||++|.+.++.. ....+|
T Consensus 21 ~~~~~~fe~l-~l~r~vl~glrrn-~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~I 98 (980)
T KOG4284|consen 21 SNCTPGFEQL-ALWREVLLGLRRN-AFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVI 98 (980)
T ss_pred cCCCCCHHHH-HHHHHHHHHHHhh-cccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEE
Confidence 4445555533 3445566667654 8999999999999999999999999999999999998766643 368999
Q ss_pred EcccHHHHHHHHHHHHHc-----CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcC
Q 035988 137 VSPLLSLIQDQVMCLAAL-----GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAG 211 (692)
Q Consensus 137 i~Pt~~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~ 211 (692)
|+|||+++-|+.+.+.+. |.++.++.|+.........+. .++|+|+||+++.. +.+ ....+.+
T Consensus 99 v~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk-------~~rIvIGtPGRi~q---L~e--l~~~n~s 166 (980)
T KOG4284|consen 99 VTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLK-------QTRIVIGTPGRIAQ---LVE--LGAMNMS 166 (980)
T ss_pred EecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhh-------hceEEecCchHHHH---HHH--hcCCCcc
Confidence 999999999999999886 668888888877653322222 68999999998864 222 2455778
Q ss_pred CceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEeccCCC---CcceE
Q 035988 212 RLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINR---PNLFY 288 (692)
Q Consensus 212 ~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r---~~l~~ 288 (692)
+++++|+||||.+.+-+ .|..++.. .+.......|++++|||.+..+.+.+.+++..+..+.+...... ...++
T Consensus 167 ~vrlfVLDEADkL~~t~-sfq~~In~--ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv 243 (980)
T KOG4284|consen 167 HVRLFVLDEADKLMDTE-SFQDDINI--IINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYV 243 (980)
T ss_pred ceeEEEeccHHhhhchh-hHHHHHHH--HHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhhee
Confidence 99999999999998865 37777765 33444447899999999999999999998877665554332111 11233
Q ss_pred EEeeccCcch----HHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcC
Q 035988 289 MVREKSSVGK----VVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKN 364 (692)
Q Consensus 289 ~v~~~~~~~~----~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g 364 (692)
......+..- .+++.|-.++... +-..+||||++...|+.++..|+..|++|.++.|.|++.+|..+++.++.-
T Consensus 244 ~~~~s~nnsveemrlklq~L~~vf~~i--py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f 321 (980)
T KOG4284|consen 244 VAKCSPNNSVEEMRLKLQKLTHVFKSI--PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAF 321 (980)
T ss_pred eeccCCcchHHHHHHHHHHHHHHHhhC--chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhc
Confidence 3333322211 1334444444433 677899999999999999999999999999999999999999999999999
Q ss_pred CCcEEEeccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCC
Q 035988 365 KLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPAD 423 (692)
Q Consensus 365 ~~~ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d 423 (692)
..+|||+|+..+||||-++|++||+.|.|.+.++|.||+|||||.|..|.+++|+..+.
T Consensus 322 ~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~ 380 (980)
T KOG4284|consen 322 RVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDER 380 (980)
T ss_pred eEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccch
Confidence 99999999999999999999999999999999999999999999999999999987654
No 51
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.7e-39 Score=379.52 Aligned_cols=323 Identities=22% Similarity=0.316 Sum_probs=242.9
Q ss_pred CCCCcHHHHHHHHHhcCCCCCCHHHHHHHHH-HHcCCCEEEEecCCChhHHHHHHHHHh----cCCeEEEEcccHHHHHH
Q 035988 72 TFEWDSRADDVRLNVFGIPAYRANQQEIINA-VLSGRDVLVIMAAGGGKSLCYQLPAVL----REGIALVVSPLLSLIQD 146 (692)
Q Consensus 72 ~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~-il~g~dviv~apTGsGKTl~~~lpal~----~~~~~lvi~Pt~~L~~q 146 (692)
.+++++.+.+.+++ .|+..|+|+|.++++. +++|+|++++||||||||++|.+|++. .++++|+|+|+++|+.|
T Consensus 5 ~l~l~~~~~~~l~~-~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q 83 (720)
T PRK00254 5 ELRVDERIKRVLKE-RGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEE 83 (720)
T ss_pred HcCCCHHHHHHHHh-CCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHH
Confidence 45688899999987 6999999999999986 789999999999999999999999864 36799999999999999
Q ss_pred HHHHHHH---cCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCccc
Q 035988 147 QVMCLAA---LGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHC 223 (692)
Q Consensus 147 ~~~~l~~---~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~ 223 (692)
+++.++. +|+++..++|+...... . + ..++|+|+||+++.. +.. .....+.++++|||||+|.
T Consensus 84 ~~~~~~~~~~~g~~v~~~~Gd~~~~~~--~---~----~~~~IiV~Tpe~~~~---ll~--~~~~~l~~l~lvViDE~H~ 149 (720)
T PRK00254 84 KYREFKDWEKLGLRVAMTTGDYDSTDE--W---L----GKYDIIIATAEKFDS---LLR--HGSSWIKDVKLVVADEIHL 149 (720)
T ss_pred HHHHHHHHhhcCCEEEEEeCCCCCchh--h---h----ccCCEEEEcHHHHHH---HHh--CCchhhhcCCEEEEcCcCc
Confidence 9988875 48889999988765321 1 1 268999999998753 211 1122457899999999999
Q ss_pred ccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEeccCCCCc-ceEEEe------eccCc
Q 035988 224 CSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPN-LFYMVR------EKSSV 296 (692)
Q Consensus 224 l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~-l~~~v~------~~~~~ 296 (692)
+.+++ +.+.+.. .+....++.+++++|||++. ..++.++++.... .+..+|. +...+. .....
T Consensus 150 l~~~~--rg~~le~--il~~l~~~~qiI~lSATl~n--~~~la~wl~~~~~----~~~~rpv~l~~~~~~~~~~~~~~~~ 219 (720)
T PRK00254 150 IGSYD--RGATLEM--ILTHMLGRAQILGLSATVGN--AEELAEWLNAELV----VSDWRPVKLRKGVFYQGFLFWEDGK 219 (720)
T ss_pred cCCcc--chHHHHH--HHHhcCcCCcEEEEEccCCC--HHHHHHHhCCccc----cCCCCCCcceeeEecCCeeeccCcc
Confidence 98766 4444444 23334457899999999975 3667788875421 1112221 110000 00000
Q ss_pred ----chHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHC---------------------------------C
Q 035988 297 ----GKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQR---------------------------------G 339 (692)
Q Consensus 297 ----~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~---------------------------------g 339 (692)
.......+.+.+. .++++||||+|++.|+.++..|... .
T Consensus 220 ~~~~~~~~~~~~~~~i~----~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~ 295 (720)
T PRK00254 220 IERFPNSWESLVYDAVK----KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALR 295 (720)
T ss_pred hhcchHHHHHHHHHHHH----hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHh
Confidence 0111223333333 5789999999999999888766421 2
Q ss_pred CceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEE-------eCCCC-CHHHHHHHHhhcCCCC-
Q 035988 340 ISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIH-------HSLSK-SVETYYQESGRAGRDG- 410 (692)
Q Consensus 340 ~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~-------~~~P~-s~~~y~Qr~GRagR~G- 410 (692)
..+.++||+|++++|..+.+.|++|.++|||||+++++|+|+|++++||+ ++.|. ++.+|.||+|||||.|
T Consensus 296 ~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~ 375 (720)
T PRK00254 296 GGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKY 375 (720)
T ss_pred hCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCc
Confidence 35889999999999999999999999999999999999999999999994 55544 6789999999999976
Q ss_pred -CCCeeEeecCCCC
Q 035988 411 -LPSECLLFFRPAD 423 (692)
Q Consensus 411 -~~g~~i~l~~~~d 423 (692)
..|.++++....+
T Consensus 376 d~~G~~ii~~~~~~ 389 (720)
T PRK00254 376 DEVGEAIIVATTEE 389 (720)
T ss_pred CCCceEEEEecCcc
Confidence 4599999987655
No 52
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=9.3e-39 Score=382.67 Aligned_cols=374 Identities=21% Similarity=0.218 Sum_probs=260.0
Q ss_pred EEecCCChhHHHHHHHHHhc----------------CCeEEEEcccHHHHHHHHHHHHH----------------cCCCE
Q 035988 111 VIMAAGGGKSLCYQLPAVLR----------------EGIALVVSPLLSLIQDQVMCLAA----------------LGIPA 158 (692)
Q Consensus 111 v~apTGsGKTl~~~lpal~~----------------~~~~lvi~Pt~~L~~q~~~~l~~----------------~gi~~ 158 (692)
|+||||||||+||.||++.+ +.++|||+|+++|+.|+.+.++. .++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 57999999999999998732 25799999999999999998863 36788
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccc--cCCCchHHHH
Q 035988 159 HMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQ--WGHDFRPDYK 236 (692)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~--~g~~fr~~~~ 236 (692)
..++|+.+..++..... . .++|+|+|||+|... +.. .....++++++|||||+|.+.+ +|..+...+.
T Consensus 81 ~vrtGDt~~~eR~rll~----~--ppdILVTTPEsL~~L---Lts-k~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~Le 150 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTR----N--PPDILITTPESLYLM---LTS-RARETLRGVETVIIDEVHAVAGSKRGAHLALSLE 150 (1490)
T ss_pred EEEECCCCHHHHHHHhc----C--CCCEEEecHHHHHHH---Hhh-hhhhhhccCCEEEEecHHHhcccccccHHHHHHH
Confidence 89999998876544332 1 689999999988632 111 1123568899999999999974 5766666666
Q ss_pred HHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEecc-CCCC-cceEEEeeccCc-----------------c
Q 035988 237 NLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVST-INRP-NLFYMVREKSSV-----------------G 297 (692)
Q Consensus 237 ~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~-~~r~-~l~~~v~~~~~~-----------------~ 297 (692)
+|..+. ..+.|+|+||||.++ .+++.++|+...+..+..+ ..++ ++.+.+...... .
T Consensus 151 RL~~l~--~~~~QrIgLSATI~n--~eevA~~L~g~~pv~Iv~~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~ 226 (1490)
T PRK09751 151 RLDALL--HTSAQRIGLSATVRS--ASDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGRE 226 (1490)
T ss_pred HHHHhC--CCCCeEEEEEeeCCC--HHHHHHHhcCCCCEEEECCCCCcccceEEEEecCchhhccccccccccccchhhh
Confidence 654442 236789999999987 3577888876544333322 2222 222221110000 0
Q ss_pred hHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCC---------------------------------CceeE
Q 035988 298 KVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRG---------------------------------ISADY 344 (692)
Q Consensus 298 ~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g---------------------------------~~v~~ 344 (692)
......+...+......+.++||||||++.|+.++..|++.. ..+..
T Consensus 227 ~~i~~~v~~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~ 306 (1490)
T PRK09751 227 GSIWPYIETGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARS 306 (1490)
T ss_pred hhhhHHHHHHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeee
Confidence 011111211122222257899999999999999999997641 12578
Q ss_pred eccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCC-CCCCeeEeecCCCC
Q 035988 345 YHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRD-GLPSECLLFFRPAD 423 (692)
Q Consensus 345 ~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~-G~~g~~i~l~~~~d 423 (692)
|||+|++++|..+++.|++|++++||||+++++|||+++|++||+++.|.|+.+|+||+||+||. |..+.++++....
T Consensus 307 HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~~r- 385 (1490)
T PRK09751 307 HHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPRTR- 385 (1490)
T ss_pred ccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeCcH-
Confidence 99999999999999999999999999999999999999999999999999999999999999996 3345555443321
Q ss_pred HHHHHHHHhhhhhhhHhHHHHHHHhcCCccchHHHHHhhhCCCcccccCCCccchhHHHHHHHHHHHHHHhcCCCccHHH
Q 035988 424 VPRQSSMVFYENSGLQNLYDIVRYSQYPLHWNIEKVRLVIFEKLQQVNLFCMVVLAGHAQCIISLLQDIQDNNQRLTMLQ 503 (692)
Q Consensus 424 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~crr~~ll~~f~~~~~~C~~~Cd~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (692)
.. ++.. ..++ -.++.......... .......++.++.++. .+.+....
T Consensus 386 -~d---lle~--------~~~v--------------e~~l~g~iE~~~~p-~nplDVLaqqiva~a~-----~~~~~~d~ 433 (1490)
T PRK09751 386 -RD---LVDS--------AVIV--------------ECMFAGRLENLTPP-HNPLDVLAQQTVAAAA-----MDALQVDE 433 (1490)
T ss_pred -HH---HHhh--------HHHH--------------HHHhcCCCCccCCC-CChHHHHHHHHHHHHh-----cCCCCHHH
Confidence 10 0000 0011 11222111111000 0112357888888765 36889999
Q ss_pred HHHHHHhcccCCCcccCHHHHHHHHHHHHH
Q 035988 504 LVDKMKIKLKEIDSDLKREEIEQLVLQLII 533 (692)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 533 (692)
+.+.++.. ....+++.++++.+++.|..
T Consensus 434 l~~~vrra--~pf~~L~~~~f~~vl~~L~~ 461 (1490)
T PRK09751 434 WYSRVRRA--APWKDLPRRVFDATLDMLSG 461 (1490)
T ss_pred HHHHhhcc--CCcccCCHHHHHHHHHHHhc
Confidence 99999987 56789999999999999986
No 53
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.4e-40 Score=334.12 Aligned_cols=343 Identities=18% Similarity=0.228 Sum_probs=278.6
Q ss_pred ccccCCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc-------CCeEEEEccc
Q 035988 68 NWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR-------EGIALVVSPL 140 (692)
Q Consensus 68 ~w~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~-------~~~~lvi~Pt 140 (692)
.|. +++++..+.+++.+. ||..|+|+|++.||.+|.++|+...+-||||||.||++|++++ +-++++++||
T Consensus 22 ~fq-smgL~~~v~raI~kk-g~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralilspt 99 (529)
T KOG0337|consen 22 GFQ-SMGLDYKVLRAIHKK-GFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPT 99 (529)
T ss_pred Ccc-ccCCCHHHHHHHHHh-hcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCc
Confidence 555 789999999999876 9999999999999999999999999999999999999999865 3589999999
Q ss_pred HHHHHHHHHHHHHcC----CCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEE
Q 035988 141 LSLIQDQVMCLAALG----IPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLI 216 (692)
Q Consensus 141 ~~L~~q~~~~l~~~g----i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~i 216 (692)
++|+.|..+.++.+| ++..++.|+...+++ +..+. .++|||++||+++.....-+ ...+..+.+|
T Consensus 100 reLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeq---f~~l~---~npDii~ATpgr~~h~~vem-----~l~l~sveyV 168 (529)
T KOG0337|consen 100 RELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQ---FILLN---ENPDIIIATPGRLLHLGVEM-----TLTLSSVEYV 168 (529)
T ss_pred HHHHHHHHHHHHHhccccchhhhhhcccchHHHH---HHHhc---cCCCEEEecCceeeeeehhe-----eccccceeee
Confidence 999999999999884 456666666555433 33332 27899999999987643321 2356789999
Q ss_pred EEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEeccC-CCCcceEEEeeccC
Q 035988 217 SIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTI-NRPNLFYMVREKSS 295 (692)
Q Consensus 217 VIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~-~r~~l~~~v~~~~~ 295 (692)
|+|||+++.++| |.++... .+.+...+.+.++||||.+..+.+....- +.++..+.-.. ...+-...+.....
T Consensus 169 VfdEadrlfemg--fqeql~e--~l~rl~~~~QTllfSatlp~~lv~fakaG--l~~p~lVRldvetkise~lk~~f~~~ 242 (529)
T KOG0337|consen 169 VFDEADRLFEMG--FQEQLHE--ILSRLPESRQTLLFSATLPRDLVDFAKAG--LVPPVLVRLDVETKISELLKVRFFRV 242 (529)
T ss_pred eehhhhHHHhhh--hHHHHHH--HHHhCCCcceEEEEeccCchhhHHHHHcc--CCCCceEEeehhhhcchhhhhheeee
Confidence 999999999999 8888776 66666668899999999998877665553 33333332111 11111111111112
Q ss_pred cchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEecccc
Q 035988 296 VGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAF 375 (692)
Q Consensus 296 ~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~ 375 (692)
....+...|+.++.... ..++++|||.|..+++.+...|+..|+.+..+.|.|++..|.....+|..++..++|.|+++
T Consensus 243 ~~a~K~aaLl~il~~~~-~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdva 321 (529)
T KOG0337|consen 243 RKAEKEAALLSILGGRI-KDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVA 321 (529)
T ss_pred ccHHHHHHHHHHHhccc-cccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhh
Confidence 23455667777776554 56789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHHHHHHH
Q 035988 376 GMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSM 430 (692)
Q Consensus 376 ~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~~~~l 430 (692)
.+|+|+|-.+.||+||+|.+..-|.||+||+.|.|+.|.+|.++.+.|.+.+..+
T Consensus 322 aRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL 376 (529)
T KOG0337|consen 322 ARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDL 376 (529)
T ss_pred hccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhh
Confidence 9999999999999999999999999999999999999999999999998876654
No 54
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=2.8e-38 Score=367.77 Aligned_cols=336 Identities=19% Similarity=0.230 Sum_probs=242.1
Q ss_pred CCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHh---cCCeEEEEcccHHHHHHHH
Q 035988 72 TFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVL---REGIALVVSPLLSLIQDQV 148 (692)
Q Consensus 72 ~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~---~~~~~lvi~Pt~~L~~q~~ 148 (692)
.+++++.+.+.+.+ .+|. ++|+|.++++.+.+|++++++||||||||+++.++++. .++++|+++|+++|+.|++
T Consensus 5 ~~~l~~~~~~~~~~-~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raLa~q~~ 82 (674)
T PRK01172 5 DLGYDDEFLNLFTG-NDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAMEKY 82 (674)
T ss_pred hcCCCHHHHHHHhh-CCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHHHHHHH
Confidence 46688888998875 4775 99999999999999999999999999999999887654 4789999999999999999
Q ss_pred HHHHHc---CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCccccc
Q 035988 149 MCLAAL---GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCS 225 (692)
Q Consensus 149 ~~l~~~---gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~ 225 (692)
+.+.++ |+++...+|+...... . + ..++|+|+|||++... .. .....+.+++++||||||++.
T Consensus 83 ~~~~~l~~~g~~v~~~~G~~~~~~~--~---~----~~~dIiv~Tpek~~~l---~~--~~~~~l~~v~lvViDEaH~l~ 148 (674)
T PRK01172 83 EELSRLRSLGMRVKISIGDYDDPPD--F---I----KRYDVVILTSEKADSL---IH--HDPYIINDVGLIVADEIHIIG 148 (674)
T ss_pred HHHHHHhhcCCeEEEEeCCCCCChh--h---h----ccCCEEEECHHHHHHH---Hh--CChhHHhhcCEEEEecchhcc
Confidence 988754 7888888887654321 1 1 1579999999987532 11 112235689999999999997
Q ss_pred ccCCCchHHHHHH-HHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEeccCCCCcceEEEeec----cCcchHH
Q 035988 226 QWGHDFRPDYKNL-GILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREK----SSVGKVV 300 (692)
Q Consensus 226 ~~g~~fr~~~~~l-~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~----~~~~~~~ 300 (692)
+.+ +.+.+..+ ..++...++.+++++|||++. ..++.++++... +...+....+...+... .......
T Consensus 149 d~~--rg~~le~ll~~~~~~~~~~riI~lSATl~n--~~~la~wl~~~~---~~~~~r~vpl~~~i~~~~~~~~~~~~~~ 221 (674)
T PRK01172 149 DED--RGPTLETVLSSARYVNPDARILALSATVSN--ANELAQWLNASL---IKSNFRPVPLKLGILYRKRLILDGYERS 221 (674)
T ss_pred CCC--ccHHHHHHHHHHHhcCcCCcEEEEeCccCC--HHHHHHHhCCCc---cCCCCCCCCeEEEEEecCeeeecccccc
Confidence 654 44444433 234444578899999999975 356777876432 11111111111111100 0000000
Q ss_pred HHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHC-------------------------CCceeEeccCCCHHHHH
Q 035988 301 IDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQR-------------------------GISADYYHADMDINARE 355 (692)
Q Consensus 301 ~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~-------------------------g~~v~~~h~~~~~~eR~ 355 (692)
...+..++.+....++++||||+|++.|+.++..|... ...+.++||+|++++|.
T Consensus 222 ~~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~ 301 (674)
T PRK01172 222 QVDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRR 301 (674)
T ss_pred cccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHH
Confidence 11133444443336789999999999999999988653 12478899999999999
Q ss_pred HHHHHHhcCCCcEEEeccccccccCCCCccEEEEeC---------CCCCHHHHHHHHhhcCCCCCC--CeeEeecCCC-C
Q 035988 356 KVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHS---------LSKSVETYYQESGRAGRDGLP--SECLLFFRPA-D 423 (692)
Q Consensus 356 ~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~---------~P~s~~~y~Qr~GRagR~G~~--g~~i~l~~~~-d 423 (692)
.+++.|++|.++|||||+++++|+|+|+.++|| .+ .|.+..+|.||+|||||.|.+ |.++++.... +
T Consensus 302 ~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~ 380 (674)
T PRK01172 302 FIEEMFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPAS 380 (674)
T ss_pred HHHHHHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCccc
Confidence 999999999999999999999999999876555 33 256899999999999999964 6677775543 3
Q ss_pred HHHHHHHH
Q 035988 424 VPRQSSMV 431 (692)
Q Consensus 424 ~~~~~~l~ 431 (692)
......++
T Consensus 381 ~~~~~~~l 388 (674)
T PRK01172 381 YDAAKKYL 388 (674)
T ss_pred HHHHHHHH
Confidence 45454544
No 55
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.8e-39 Score=326.08 Aligned_cols=337 Identities=21% Similarity=0.333 Sum_probs=273.1
Q ss_pred CCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc------CCeEEEEcccHHHHH
Q 035988 72 TFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR------EGIALVVSPLLSLIQ 145 (692)
Q Consensus 72 ~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~------~~~~lvi~Pt~~L~~ 145 (692)
...+.+.+++-+. .|||..|+.+|+.||..+..|.|+++.+++|+|||.+|.++++.. ...+++++|+++|+.
T Consensus 30 dm~L~e~LLrgiy-~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~ 108 (397)
T KOG0327|consen 30 DMNLKESLLRGIY-AYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQ 108 (397)
T ss_pred hcCCCHHHHhHHH-hhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHH
Confidence 6678888888887 479999999999999999999999999999999999999999876 357999999999999
Q ss_pred HHHHHHHHc----CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCc
Q 035988 146 DQVMCLAAL----GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEA 221 (692)
Q Consensus 146 q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEa 221 (692)
|..+..... +..+..+.|+......... +... .+.|+++||+++.+. ++. .......+.++|+|||
T Consensus 109 qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~---i~~~--~~hivvGTpgrV~dm---l~~--~~l~~~~iKmfvlDEa 178 (397)
T KOG0327|consen 109 QIQKVVRALGDHMDVSVHACIGGTNVRREDQA---LLKD--KPHIVVGTPGRVFDM---LNR--GSLSTDGIKMFVLDEA 178 (397)
T ss_pred HHHHHHHhhhcccceeeeeecCcccchhhhhh---hhcc--CceeecCCchhHHHh---hcc--ccccccceeEEeecch
Confidence 999888876 3555556665544322211 1211 689999999987642 221 1334567999999999
Q ss_pred ccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEeccC---CCCcceEEEeeccCcch
Q 035988 222 HCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTI---NRPNLFYMVREKSSVGK 298 (692)
Q Consensus 222 H~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~---~r~~l~~~v~~~~~~~~ 298 (692)
+.+...| |+.++.. .+....+++|++++|||.+..+...-.+++.-+..+...... .-...+|....+.
T Consensus 179 DEmLs~g--fkdqI~~--if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~---- 250 (397)
T KOG0327|consen 179 DEMLSRG--FKDQIYD--IFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKE---- 250 (397)
T ss_pred Hhhhccc--hHHHHHH--HHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeecccc----
Confidence 9999988 9999887 566777799999999999999888777776655444332211 1111122222222
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccc
Q 035988 299 VVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMG 378 (692)
Q Consensus 299 ~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~G 378 (692)
.+++.+.++.+ .-...+||||+++.+..+...|...++.+..+||.|.+.+|..++..|+.|..+|||+|+.+++|
T Consensus 251 ~k~~~l~dl~~----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~arg 326 (397)
T KOG0327|consen 251 EKLDTLCDLYR----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARG 326 (397)
T ss_pred ccccHHHHHHH----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccc
Confidence 25666777666 45678999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHHHHHHHH
Q 035988 379 INKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMV 431 (692)
Q Consensus 379 IDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~~~~l~ 431 (692)
||+.++..||+|++|...++|+||+||+||.|.+|.++.+++..|...++.+.
T Consensus 327 idv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie 379 (397)
T KOG0327|consen 327 IDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIE 379 (397)
T ss_pred cchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHH
Confidence 99999999999999999999999999999999999999999998877666543
No 56
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=8.9e-37 Score=347.40 Aligned_cols=320 Identities=16% Similarity=0.153 Sum_probs=219.7
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCC-CEEEEecCCChhHHHHHHHHHhc-----CC-eEEEEcccHHHHHHHHHHH
Q 035988 79 ADDVRLNVFGIPAYRANQQEIINAVLSGR-DVLVIMAAGGGKSLCYQLPAVLR-----EG-IALVVSPLLSLIQDQVMCL 151 (692)
Q Consensus 79 ~~~~l~~~fg~~~~r~~Q~~ai~~il~g~-dviv~apTGsGKTl~~~lpal~~-----~~-~~lvi~Pt~~L~~q~~~~l 151 (692)
..+...+..||. |+|+|.++|+.++.|+ ++++.+|||||||.+|.++.+.. .+ +.++++|+|+|+.|+++.+
T Consensus 4 f~~ff~~~~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~ 82 (844)
T TIGR02621 4 FDEWYQGLHGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEA 82 (844)
T ss_pred HHHHHHHHhCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHH
Confidence 344555667997 9999999999999998 57888999999999655433311 13 4555779999999999988
Q ss_pred HHcC---------------------------CCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHH--
Q 035988 152 AALG---------------------------IPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMS-- 202 (692)
Q Consensus 152 ~~~g---------------------------i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~-- 202 (692)
.+++ +++..+.|+.....+. ..+. ..++|||+|++.+.+ +.+.
T Consensus 83 ~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~---~~l~---~~p~IIVgT~D~i~s--r~L~~g 154 (844)
T TIGR02621 83 EKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEW---MLDP---HRPAVIVGTVDMIGS--RLLFSG 154 (844)
T ss_pred HHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHH---HhcC---CCCcEEEECHHHHcC--Cccccc
Confidence 7653 5667788887765332 2222 268999999987754 1110
Q ss_pred ----HHH---hhhhcCCceEEEEeCcccccccCCCchHHHHHHHHHHhhCC---CCCEEEEecccchhhHHHHHHHhccc
Q 035988 203 ----KLE---KCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFP---DVPMMALTATATQKVQNDLMEMLHIR 272 (692)
Q Consensus 203 ----~l~---~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~---~~~~i~lSAT~~~~~~~~i~~~l~~~ 272 (692)
... +...++++.++|+|||| .+.| |...+..+.......+ +.++++||||++..+......++..+
T Consensus 155 Yg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~g--F~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p 230 (844)
T TIGR02621 155 YGCGFKSRPLHAGFLGQDALIVHDEAH--LEPA--FQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAED 230 (844)
T ss_pred cccccccccchhhhhccceEEEEehhh--hccc--cHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCC
Confidence 000 11125789999999999 4566 8888877544322222 26899999999987665444443322
Q ss_pred ceEEEe-ccCCCCcceEEEeeccCcchHHHHHHHHHHHH-hCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCC
Q 035988 273 KCIKFV-STINRPNLFYMVREKSSVGKVVIDEIAKYIQE-SYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMD 350 (692)
Q Consensus 273 ~~~~~~-~~~~r~~l~~~v~~~~~~~~~~~~~l~~~l~~-~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~ 350 (692)
....+. ......++...+ ... ...+...+...+.. ....++++||||||++.|+.+++.|++.++ ..+||+|+
T Consensus 231 ~~i~V~~~~l~a~ki~q~v-~v~--~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~ 305 (844)
T TIGR02621 231 YKHPVLKKRLAAKKIVKLV-PPS--DEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLR 305 (844)
T ss_pred ceeecccccccccceEEEE-ecC--hHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCC
Confidence 111111 111111111111 111 11122222222211 112568899999999999999999998887 89999999
Q ss_pred HHHHH-----HHHHHHhc----CC-------CcEEEeccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCe
Q 035988 351 INARE-----KVHMRWSK----NK-------LQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSE 414 (692)
Q Consensus 351 ~~eR~-----~~~~~f~~----g~-------~~ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~ 414 (692)
+.+|. .+++.|++ |+ ..|||||+++++|||++. ++||++..| +++|+||+||+||.|..+.
T Consensus 306 q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~ 382 (844)
T TIGR02621 306 GAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQA 382 (844)
T ss_pred HHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCC
Confidence 99999 88999987 44 679999999999999986 888888777 7999999999999998643
Q ss_pred e-Eeec
Q 035988 415 C-LLFF 419 (692)
Q Consensus 415 ~-i~l~ 419 (692)
+ +.++
T Consensus 383 ~~i~vv 388 (844)
T TIGR02621 383 CQIAVV 388 (844)
T ss_pred ceEEEE
Confidence 3 4444
No 57
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=6.1e-36 Score=323.61 Aligned_cols=308 Identities=16% Similarity=0.107 Sum_probs=200.8
Q ss_pred CEEEEecCCChhHHHHHHHHHh-----cCCeEEEEcccHHHHHHHHHHHHHc-CCCEEEEecCCChhH---------HHH
Q 035988 108 DVLVIMAAGGGKSLCYQLPAVL-----REGIALVVSPLLSLIQDQVMCLAAL-GIPAHMLTSTTSKED---------EKF 172 (692)
Q Consensus 108 dviv~apTGsGKTl~~~lpal~-----~~~~~lvi~Pt~~L~~q~~~~l~~~-gi~~~~~~~~~~~~~---------~~~ 172 (692)
++++.||||||||++|++|++. ..+++++++|+++|+.|+.+.+... |..+..+++...... ...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFEH 80 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHHH
Confidence 6899999999999999999883 3479999999999999999999986 766665655432110 001
Q ss_pred HHHHHHhc---CCCccEEEeChhhhhchHHH-HHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCC
Q 035988 173 IYKALEKG---EGELKMLYVTPEKISKSKRF-MSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDV 248 (692)
Q Consensus 173 ~~~~l~~~---~~~~~Ili~Tpe~l~~~~~~-~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~ 248 (692)
........ ....+|+++||+++.....- ..........-..+++||||||++.+++..+ ....+..+. ..+.
T Consensus 81 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~--l~~~l~~l~--~~~~ 156 (358)
T TIGR01587 81 LFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL--ILAVLEVLK--DNDV 156 (358)
T ss_pred HHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH--HHHHHHHHH--HcCC
Confidence 11111110 01468999999987642110 0000000011134899999999998865222 222222222 3478
Q ss_pred CEEEEecccchhhHHHHHHHhcccceEEEeccCCCCcceEEEeeccCcchHHHHHHHHHHHHhCCCCCceEEEEeccchH
Q 035988 249 PMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKEC 328 (692)
Q Consensus 249 ~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~ 328 (692)
|+++||||++..+.+.+...........+.....+....+.+.............+..++... ..++++||||+|++.|
T Consensus 157 ~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~lVf~~t~~~~ 235 (358)
T TIGR01587 157 PILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSLERLLEFI-KKGGKIAIIVNTVDRA 235 (358)
T ss_pred CEEEEecCchHHHHHHHhcCCCcccccCCCCccccccccccceeeccccccCHHHHHHHHHHh-hCCCeEEEEECCHHHH
Confidence 999999999866544443322211111111000000001111000110111123333333322 2678999999999999
Q ss_pred HHHHHHHHHCCC--ceeEeccCCCHHHHHHH----HHHHhcCCCcEEEeccccccccCCCCccEEEEeCCCCCHHHHHHH
Q 035988 329 EQVAQELRQRGI--SADYYHADMDINAREKV----HMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQE 402 (692)
Q Consensus 329 e~l~~~L~~~g~--~v~~~h~~~~~~eR~~~----~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr 402 (692)
+.+++.|++.+. .+..+||++++.+|... ++.|++|+.+|||||+++++|+|++ +++||++..| +++|+||
T Consensus 236 ~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr 312 (358)
T TIGR01587 236 QEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQR 312 (358)
T ss_pred HHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHHH
Confidence 999999998766 49999999999999764 8899999999999999999999995 8899988777 8899999
Q ss_pred HhhcCCCCCC----CeeEeecCCCC
Q 035988 403 SGRAGRDGLP----SECLLFFRPAD 423 (692)
Q Consensus 403 ~GRagR~G~~----g~~i~l~~~~d 423 (692)
+||+||.|+. |..++|+...+
T Consensus 313 ~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 313 LGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred hccccCCCCCCCCCCeEEEEeecCC
Confidence 9999999865 36777766544
No 58
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=4.1e-35 Score=350.90 Aligned_cols=304 Identities=17% Similarity=0.241 Sum_probs=219.3
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHh---cCCeEEEEcccHHHHHHHHHHHHHc-
Q 035988 79 ADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVL---REGIALVVSPLLSLIQDQVMCLAAL- 154 (692)
Q Consensus 79 ~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~---~~~~~lvi~Pt~~L~~q~~~~l~~~- 154 (692)
..+.+++.+|+ .|+|+|..+++.++.|+|++++||||+|||..++++++. .+++++||+||++|+.|+++.++.+
T Consensus 69 ~~~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l~ 147 (1176)
T PRK09401 69 FEKFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKFG 147 (1176)
T ss_pred HHHHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHHh
Confidence 44566677898 899999999999999999999999999999754433332 3579999999999999999999987
Q ss_pred ---CCCEEEEecCCC--hhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCC
Q 035988 155 ---GIPAHMLTSTTS--KEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGH 229 (692)
Q Consensus 155 ---gi~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~ 229 (692)
++.+..+.++.. ..+.......+..+ .++|+|+||++|.. ..+ .....+++++||||||++++|++
T Consensus 148 ~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~--~~~IlV~Tp~rL~~---~~~----~l~~~~~~~lVvDEaD~~L~~~k 218 (1176)
T PRK09401 148 EKVGCGVKILYYHSSLKKKEKEEFLERLKEG--DFDILVTTSQFLSK---NFD----ELPKKKFDFVFVDDVDAVLKSSK 218 (1176)
T ss_pred hhcCceEEEEEccCCcchhHHHHHHHHHhcC--CCCEEEECHHHHHH---HHH----hccccccCEEEEEChHHhhhccc
Confidence 445555555543 33444444555544 78999999998753 222 22345699999999999998664
Q ss_pred C---------ch-HHH-----------------HHHHHHHhhCC-----CCCEEEEecccchh-hHHH-HHHHhcccceE
Q 035988 230 D---------FR-PDY-----------------KNLGILKTQFP-----DVPMMALTATATQK-VQND-LMEMLHIRKCI 275 (692)
Q Consensus 230 ~---------fr-~~~-----------------~~l~~l~~~~~-----~~~~i~lSAT~~~~-~~~~-i~~~l~~~~~~ 275 (692)
+ |. .++ ..+..+..... +.+++++|||+++. +... +...+++..
T Consensus 219 ~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~~~v-- 296 (1176)
T PRK09401 219 NIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLGFEV-- 296 (1176)
T ss_pred chhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccceEEe--
Confidence 3 53 222 22222222211 57889999999875 3322 223222111
Q ss_pred EEeccCCCCcceEEEeeccCcchHHHHHHHHHHHHhCCCCCceEEEEeccch---HHHHHHHHHHCCCceeEeccCCCHH
Q 035988 276 KFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKE---CEQVAQELRQRGISADYYHADMDIN 352 (692)
Q Consensus 276 ~~~~~~~r~~l~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~---~e~l~~~L~~~g~~v~~~h~~~~~~ 352 (692)
-.......|+........ .....+..++... +.++||||++++. ++.+++.|+..|+++..+||+|
T Consensus 297 -~~~~~~~rnI~~~yi~~~----~k~~~L~~ll~~l---~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l--- 365 (1176)
T PRK09401 297 -GSPVFYLRNIVDSYIVDE----DSVEKLVELVKRL---GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF--- 365 (1176)
T ss_pred -cCcccccCCceEEEEEcc----cHHHHHHHHHHhc---CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH---
Confidence 011122234432222221 2344566666543 4689999999888 9999999999999999999999
Q ss_pred HHHHHHHHHhcCCCcEEEe----ccccccccCCCC-ccEEEEeCCCC------CHHHHHHHHhhcC
Q 035988 353 AREKVHMRWSKNKLQVIVG----TVAFGMGINKPD-VRFVIHHSLSK------SVETYYQESGRAG 407 (692)
Q Consensus 353 eR~~~~~~f~~g~~~ILVa----T~~~~~GIDip~-v~~VI~~~~P~------s~~~y~Qr~GRag 407 (692)
...+++|++|+++|||| |++++||||+|+ |++|||||+|+ ..+.|.|++||+-
T Consensus 366 --~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~ 429 (1176)
T PRK09401 366 --ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLL 429 (1176)
T ss_pred --HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHH
Confidence 22359999999999999 689999999999 89999999998 6788999999996
No 59
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=3.9e-35 Score=315.04 Aligned_cols=302 Identities=18% Similarity=0.203 Sum_probs=209.1
Q ss_pred HHHHHHHHHHcCCC--EEEEecCCChhHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHc--------CCCEEEEecC
Q 035988 95 NQQEIINAVLSGRD--VLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMCLAAL--------GIPAHMLTST 164 (692)
Q Consensus 95 ~Q~~ai~~il~g~d--viv~apTGsGKTl~~~lpal~~~~~~lvi~Pt~~L~~q~~~~l~~~--------gi~~~~~~~~ 164 (692)
+|.++++++.++.+ +++.||||||||+||++|++....++++++|+++|++|+.+.++.+ ++.+..++|.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~ 80 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHGENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKA 80 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecCC
Confidence 59999999999875 7889999999999999999988889999999999999999998875 3445566665
Q ss_pred CChhHHHHH----------------HHHHHhcCCCccEEEeChhhhhchHHHHHHHH---hhhhcCCceEEEEeCccccc
Q 035988 165 TSKEDEKFI----------------YKALEKGEGELKMLYVTPEKISKSKRFMSKLE---KCHHAGRLSLISIDEAHCCS 225 (692)
Q Consensus 165 ~~~~~~~~~----------------~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~---~~~~~~~l~~iVIDEaH~l~ 225 (692)
...+..... ...+. ...+.|+++||+.+....+...... ....+..++++||||+|.+.
T Consensus 81 ~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~--~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~~ 158 (357)
T TIGR03158 81 TLKDIKEYANDKVGSSKGEKLYNLLRNPIG--TSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLYD 158 (357)
T ss_pred chHHHHHhhhhhcccCccchhhhhHHHHHh--cCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecccccC
Confidence 322211000 01111 2268899999998863211100000 01124689999999999999
Q ss_pred ccCCCchHHHHHHHHHHh-hCCCCCEEEEecccchhhHHHHHHHhcccceEEEeccC------------C------C---
Q 035988 226 QWGHDFRPDYKNLGILKT-QFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTI------------N------R--- 283 (692)
Q Consensus 226 ~~g~~fr~~~~~l~~l~~-~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~------------~------r--- 283 (692)
.|+..+...+.....+.. ...+.+++++|||+++.+...+...+....+....... . |
T Consensus 159 ~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~ 238 (357)
T TIGR03158 159 AKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVL 238 (357)
T ss_pred cccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccccceec
Confidence 877655554433333322 22356899999999998888777653222222221111 0 1
Q ss_pred CcceEEEeeccCcchHHHHHHHHHHHHhC--CCCCceEEEEeccchHHHHHHHHHHCC--CceeEeccCCCHHHHHHHHH
Q 035988 284 PNLFYMVREKSSVGKVVIDEIAKYIQESY--PNSESGIVYCFSRKECEQVAQELRQRG--ISADYYHADMDINAREKVHM 359 (692)
Q Consensus 284 ~~l~~~v~~~~~~~~~~~~~l~~~l~~~~--~~~~~~IIf~~s~~~~e~l~~~L~~~g--~~v~~~h~~~~~~eR~~~~~ 359 (692)
|++...+..........+..+.+.+.+.+ ..++++||||+|++.++.++..|++.+ +.+..+||.+++.+|...
T Consensus 239 ~~i~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~-- 316 (357)
T TIGR03158 239 PPVELELIPAPDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA-- 316 (357)
T ss_pred cceEEEEEeCCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh--
Confidence 23444443322222233334444443322 257799999999999999999999864 578899999999988754
Q ss_pred HHhcCCCcEEEeccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcC
Q 035988 360 RWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAG 407 (692)
Q Consensus 360 ~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRag 407 (692)
++.+|||||+++++|||+|++ +|| ++ |.++++|+||+||+|
T Consensus 317 ----~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 317 ----MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred ----ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 478999999999999999987 666 45 899999999999997
No 60
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=4.2e-34 Score=319.15 Aligned_cols=328 Identities=21% Similarity=0.184 Sum_probs=235.4
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc---CCeEEEEcccHHHHHHHHHHHHHc-
Q 035988 79 ADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR---EGIALVVSPLLSLIQDQVMCLAAL- 154 (692)
Q Consensus 79 ~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~---~~~~lvi~Pt~~L~~q~~~~l~~~- 154 (692)
+.++.++.+|+ .|+|+|..+++.++.|+ |+.|.||+|||++|.+|++.. +..++|++||++|+.|.++.+..+
T Consensus 92 ~rEa~~R~lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~G~~v~VvTptreLA~qdae~~~~l~ 168 (656)
T PRK12898 92 VREASGRVLGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMRPLY 168 (656)
T ss_pred HHHHHHHHhCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhcCCeEEEEcCcHHHHHHHHHHHHHHH
Confidence 44556666898 68899999999999999 999999999999999999864 679999999999999999888764
Q ss_pred ---CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHh----------------------hhh
Q 035988 155 ---GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEK----------------------CHH 209 (692)
Q Consensus 155 ---gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~----------------------~~~ 209 (692)
|+++.++.|+.+...+... ..++|+|+|...+.- ..+.+.+.. ...
T Consensus 169 ~~lGlsv~~i~gg~~~~~r~~~--------y~~dIvygT~~e~~F-DyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v 239 (656)
T PRK12898 169 EALGLTVGCVVEDQSPDERRAA--------YGADITYCTNKELVF-DYLRDRLALGQRASDARLALESLHGRSSRSTQLL 239 (656)
T ss_pred hhcCCEEEEEeCCCCHHHHHHH--------cCCCEEEECCCchhh-hhccccccccccccchhhhhhhhccccCchhhhc
Confidence 8999999998765433222 168999999987731 122222211 112
Q ss_pred cCCceEEEEeCcccccc-----------c--CCCchHHHHHHHHHHhh--------------------------------
Q 035988 210 AGRLSLISIDEAHCCSQ-----------W--GHDFRPDYKNLGILKTQ-------------------------------- 244 (692)
Q Consensus 210 ~~~l~~iVIDEaH~l~~-----------~--g~~fr~~~~~l~~l~~~-------------------------------- 244 (692)
...+.+.||||||.++= - ..+....|.....+...
T Consensus 240 ~r~~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~ 319 (656)
T PRK12898 240 LRGLHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAES 319 (656)
T ss_pred ccccceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCc
Confidence 35688999999998640 0 00000011100000000
Q ss_pred ------------------------C-CCC---------------------------------------------------
Q 035988 245 ------------------------F-PDV--------------------------------------------------- 248 (692)
Q Consensus 245 ------------------------~-~~~--------------------------------------------------- 248 (692)
| .+.
T Consensus 320 l~~~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~I 399 (656)
T PRK12898 320 LPPAWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARI 399 (656)
T ss_pred chhhcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeee
Confidence 0 000
Q ss_pred ----------CEEEEecccchhhHHHHHHHhcccceEEEeccCCCCcceEEEee-ccCcchHHHHHHHHHHHHhCCCCCc
Q 035988 249 ----------PMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVRE-KSSVGKVVIDEIAKYIQESYPNSES 317 (692)
Q Consensus 249 ----------~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~-~~~~~~~~~~~l~~~l~~~~~~~~~ 317 (692)
.+.+||||+... .+.+.+.+++.. +.-+.++|+....... .......++..|.+.+......+.+
T Consensus 400 t~q~~Fr~Y~kl~GmTGTa~~~-~~El~~~y~l~v---v~IPt~kp~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~p 475 (656)
T PRK12898 400 TYQRFFRRYLRLAGMTGTAREV-AGELWSVYGLPV---VRIPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRP 475 (656)
T ss_pred hHHHHHHhhHHHhcccCcChHH-HHHHHHHHCCCe---EEeCCCCCccceecCCEEEeCHHHHHHHHHHHHHHHHhcCCC
Confidence 122378888754 456667666653 2334455543211110 0112345677788888765445789
Q ss_pred eEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCC---Ccc-----EEEE
Q 035988 318 GIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKP---DVR-----FVIH 389 (692)
Q Consensus 318 ~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip---~v~-----~VI~ 389 (692)
+||||+|++.++.++..|...|+++..+||+++..+ ..+..|..+...|+|||++++||+|++ +|. +||+
T Consensus 476 vLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~~rE--~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~ 553 (656)
T PRK12898 476 VLVGTRSVAASERLSALLREAGLPHQVLNAKQDAEE--AAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVIL 553 (656)
T ss_pred EEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcHHHH--HHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEE
Confidence 999999999999999999999999999999976554 444555555667999999999999999 776 9999
Q ss_pred eCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCH
Q 035988 390 HSLSKSVETYYQESGRAGRDGLPSECLLFFRPADV 424 (692)
Q Consensus 390 ~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~ 424 (692)
+++|.|...|.||+||+||.|.+|.|+.|++..|.
T Consensus 554 ~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 554 TERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred cCCCCCHHHHHHhcccccCCCCCeEEEEEechhHH
Confidence 99999999999999999999999999999998773
No 61
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=1.1e-34 Score=328.85 Aligned_cols=302 Identities=18% Similarity=0.220 Sum_probs=213.9
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCChhHHH---------HHHHHHh---------cCCeEEEEcccHHHHHHHHHHHHHc-
Q 035988 94 ANQQEIINAVLSGRDVLVIMAAGGGKSLC---------YQLPAVL---------REGIALVVSPLLSLIQDQVMCLAAL- 154 (692)
Q Consensus 94 ~~Q~~ai~~il~g~dviv~apTGsGKTl~---------~~lpal~---------~~~~~lvi~Pt~~L~~q~~~~l~~~- 154 (692)
.+|.++++.+++|++++++|+||+|||.+ |++|.+. ..+.++|++||++|+.|....+.+.
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 48899999999999999999999999986 4444332 1358999999999999998888652
Q ss_pred ------CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccC
Q 035988 155 ------GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWG 228 (692)
Q Consensus 155 ------gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g 228 (692)
|.++....|+....... ... ...+|+++|+.... ..+.++++|||||||.++..+
T Consensus 247 g~~~~~g~~v~v~~Gg~~~~~~~-----t~~--k~~~Ilv~T~~L~l------------~~L~~v~~VVIDEaHEr~~~~ 307 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPDELIN-----TNP--KPYGLVFSTHKLTL------------NKLFDYGTVIIDEVHEHDQIG 307 (675)
T ss_pred CccccCCceEEEEECCcchHHhh-----ccc--CCCCEEEEeCcccc------------cccccCCEEEccccccCccch
Confidence 45567777776621101 111 15689999976311 124689999999999988765
Q ss_pred CCchHHHHHHHHHHhhCCC-CCEEEEecccchhhHHHHHHHhcccceEEEeccCCCCcceEEEeeccC--cc----hHHH
Q 035988 229 HDFRPDYKNLGILKTQFPD-VPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSS--VG----KVVI 301 (692)
Q Consensus 229 ~~fr~~~~~l~~l~~~~~~-~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~~--~~----~~~~ 301 (692)
+ .. +..++...+. .++++||||++..+. .+.++++.+..+.+......|--.+.+..... .. ....
T Consensus 308 -D---ll--L~llk~~~~~~rq~ILmSATl~~dv~-~l~~~~~~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k 380 (675)
T PHA02653 308 -D---II--IAVARKHIDKIRSLFLMTATLEDDRD-RIKEFFPNPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEK 380 (675)
T ss_pred -h---HH--HHHHHHhhhhcCEEEEEccCCcHhHH-HHHHHhcCCcEEEeCCCcCCCeEEEEeecCcccccchhhhHHHH
Confidence 1 11 2233333222 479999999987764 45677764443333221111111111111100 00 0111
Q ss_pred HHHHHHHHHhC-CCCCceEEEEeccchHHHHHHHHHHC--CCceeEeccCCCHHHHHHHHHHH-hcCCCcEEEecccccc
Q 035988 302 DEIAKYIQESY-PNSESGIVYCFSRKECEQVAQELRQR--GISADYYHADMDINAREKVHMRW-SKNKLQVIVGTVAFGM 377 (692)
Q Consensus 302 ~~l~~~l~~~~-~~~~~~IIf~~s~~~~e~l~~~L~~~--g~~v~~~h~~~~~~eR~~~~~~f-~~g~~~ILVaT~~~~~ 377 (692)
..+...+.... ..++++||||+++.+++.+++.|.+. ++.+..+||+|++. ++.+++| ++|+.+|||||+++++
T Consensus 381 ~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAER 458 (675)
T PHA02653 381 KNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLES 458 (675)
T ss_pred HHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhc
Confidence 22333333221 14578999999999999999999987 78999999999974 4666777 6899999999999999
Q ss_pred ccCCCCccEEEEeC---CCC---------CHHHHHHHHhhcCCCCCCCeeEeecCCCCH
Q 035988 378 GINKPDVRFVIHHS---LSK---------SVETYYQESGRAGRDGLPSECLLFFRPADV 424 (692)
Q Consensus 378 GIDip~v~~VI~~~---~P~---------s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~ 424 (692)
|||+|+|++||++| .|. |.++|.||+|||||. .+|.|+.||+..+.
T Consensus 459 GIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 459 SVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred cccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 99999999999999 665 889999999999999 79999999998874
No 62
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=9.2e-35 Score=305.49 Aligned_cols=333 Identities=23% Similarity=0.353 Sum_probs=252.0
Q ss_pred CCCCcHHHHHHHHHhcCCCCCCHHHHHHHHH-HHcCCCEEEEecCCChhHHHHHH---HHHhc-CCeEEEEcccHHHHHH
Q 035988 72 TFEWDSRADDVRLNVFGIPAYRANQQEIINA-VLSGRDVLVIMAAGGGKSLCYQL---PAVLR-EGIALVVSPLLSLIQD 146 (692)
Q Consensus 72 ~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~-il~g~dviv~apTGsGKTl~~~l---pal~~-~~~~lvi~Pt~~L~~q 146 (692)
.+++++++...|+.. |+..+.|+|.-++.+ ++.|+|.+++.+|+||||++.-+ |-++. +++.|+++|+.+|++|
T Consensus 198 eLdipe~fk~~lk~~-G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALANQ 276 (830)
T COG1202 198 ELDIPEKFKRMLKRE-GIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALANQ 276 (830)
T ss_pred ccCCcHHHHHHHHhc-CcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHhhcc
Confidence 567888899988865 999999999999988 56899999999999999998764 44455 7899999999999999
Q ss_pred HHHHHHH----cCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcc
Q 035988 147 QVMCLAA----LGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAH 222 (692)
Q Consensus 147 ~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH 222 (692)
.++.|+. +|+.+..-.|.........- -.......+||||+|+|-+.. .+.....+.+++.+||||+|
T Consensus 277 Ky~dF~~rYs~LglkvairVG~srIk~~~~p--v~~~t~~dADIIVGTYEGiD~------lLRtg~~lgdiGtVVIDEiH 348 (830)
T COG1202 277 KYEDFKERYSKLGLKVAIRVGMSRIKTREEP--VVVDTSPDADIIVGTYEGIDY------LLRTGKDLGDIGTVVIDEIH 348 (830)
T ss_pred hHHHHHHHhhcccceEEEEechhhhcccCCc--cccCCCCCCcEEEeechhHHH------HHHcCCcccccceEEeeeee
Confidence 9988875 47777666655433322110 011223479999999996642 22333567899999999999
Q ss_pred cccc--cCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEeccCCCC-cceEEEeeccCcchH
Q 035988 223 CCSQ--WGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRP-NLFYMVREKSSVGKV 299 (692)
Q Consensus 223 ~l~~--~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~-~l~~~v~~~~~~~~~ 299 (692)
.+-+ .|+-... -++.++..+|+.|+|++|||..+. ..+.+.|+...... ..|| .+-..+.... ...+
T Consensus 349 tL~deERG~RLdG---LI~RLr~l~~~AQ~i~LSATVgNp--~elA~~l~a~lV~y----~~RPVplErHlvf~~-~e~e 418 (830)
T COG1202 349 TLEDEERGPRLDG---LIGRLRYLFPGAQFIYLSATVGNP--EELAKKLGAKLVLY----DERPVPLERHLVFAR-NESE 418 (830)
T ss_pred eccchhcccchhh---HHHHHHHhCCCCeEEEEEeecCCh--HHHHHHhCCeeEee----cCCCCChhHeeeeec-CchH
Confidence 9875 5532222 245788899999999999998753 56677777653322 1122 1222222211 2334
Q ss_pred HHHHHHHHHHHhC------CCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEecc
Q 035988 300 VIDEIAKYIQESY------PNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTV 373 (692)
Q Consensus 300 ~~~~l~~~l~~~~------~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~ 373 (692)
+++.+..+.+..+ ...+++|||++|++.|..++..|...|+++..||+||+..+|..+...|.++++.++|+|.
T Consensus 419 K~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTA 498 (830)
T COG1202 419 KWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTA 498 (830)
T ss_pred HHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehh
Confidence 5566666654332 2457899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCccEEE---EeCC-CCCHHHHHHHHhhcCCCCCC--CeeEeecCCCC
Q 035988 374 AFGMGINKPDVRFVI---HHSL-SKSVETYYQESGRAGRDGLP--SECLLFFRPAD 423 (692)
Q Consensus 374 ~~~~GIDip~v~~VI---~~~~-P~s~~~y~Qr~GRagR~G~~--g~~i~l~~~~d 423 (692)
+++.|+|+|.-.+|+ -++. .-|+.+|.|+.|||||.+-. |.+|++..++-
T Consensus 499 AL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~ 554 (830)
T COG1202 499 ALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGK 554 (830)
T ss_pred hhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCCh
Confidence 999999999766544 2222 34899999999999998865 99999998864
No 63
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=6e-34 Score=330.28 Aligned_cols=303 Identities=17% Similarity=0.189 Sum_probs=217.1
Q ss_pred HHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc---CCeEEEEcccHHHHHHHHHHHH-HcCC----CEEEEecCCCh
Q 035988 96 QQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR---EGIALVVSPLLSLIQDQVMCLA-ALGI----PAHMLTSTTSK 167 (692)
Q Consensus 96 Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~---~~~~lvi~Pt~~L~~q~~~~l~-~~gi----~~~~~~~~~~~ 167 (692)
-.+++.++.++++++++|+||||||.+|.+|++.. +++++|+.|+|+++.|+.+++. .+|. .+.+.......
T Consensus 7 ~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~~ 86 (819)
T TIGR01970 7 LPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGENK 86 (819)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEccccc
Confidence 34567777788999999999999999999887743 4699999999999999999985 4443 33333222110
Q ss_pred hHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCccc-ccccCCCchHHHHHHHHHHh-hC
Q 035988 168 EDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHC-CSQWGHDFRPDYKNLGILKT-QF 245 (692)
Q Consensus 168 ~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~-l~~~g~~fr~~~~~l~~l~~-~~ 245 (692)
.....+|+|+||+.|. ..+.....+.++++|||||+|. ..+. +|.-.+. ..+.. ..
T Consensus 87 ------------~s~~t~I~v~T~G~Ll------r~l~~d~~L~~v~~VIiDEaHER~L~~--Dl~L~ll--~~i~~~lr 144 (819)
T TIGR01970 87 ------------VSRRTRLEVVTEGILT------RMIQDDPELDGVGALIFDEFHERSLDA--DLGLALA--LDVQSSLR 144 (819)
T ss_pred ------------cCCCCcEEEECCcHHH------HHHhhCcccccCCEEEEeccchhhhcc--chHHHHH--HHHHHhcC
Confidence 0125799999999775 2334445678999999999995 4432 2332221 12333 35
Q ss_pred CCCCEEEEecccchhhHHHHHHHhcccceEEEeccCCCCcceEEEeeccCcch-HHHHHHHHHHHHhCCCCCceEEEEec
Q 035988 246 PDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGK-VVIDEIAKYIQESYPNSESGIVYCFS 324 (692)
Q Consensus 246 ~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~~~~~-~~~~~l~~~l~~~~~~~~~~IIf~~s 324 (692)
++.++++||||++... +.++++....+...........+|.......... .....+...+.. ..+.+||||++
T Consensus 145 ~dlqlIlmSATl~~~~---l~~~l~~~~vI~~~gr~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~---~~g~iLVFlpg 218 (819)
T TIGR01970 145 EDLKILAMSATLDGER---LSSLLPDAPVVESEGRSFPVEIRYLPLRGDQRLEDAVSRAVEHALAS---ETGSILVFLPG 218 (819)
T ss_pred CCceEEEEeCCCCHHH---HHHHcCCCcEEEecCcceeeeeEEeecchhhhHHHHHHHHHHHHHHh---cCCcEEEEECC
Confidence 6889999999999754 3455543322222111111112222111111100 111233333332 45789999999
Q ss_pred cchHHHHHHHHHH---CCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEEeCCCC-------
Q 035988 325 RKECEQVAQELRQ---RGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSK------- 394 (692)
Q Consensus 325 ~~~~e~l~~~L~~---~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~~P~------- 394 (692)
+.+++.+++.|++ .++.+..+||+|+.++|..+++.|.+|+.+|||||+++++|||+|+|++||++++|+
T Consensus 219 ~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~ 298 (819)
T TIGR01970 219 QAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPK 298 (819)
T ss_pred HHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccc
Confidence 9999999999987 478899999999999999999999999999999999999999999999999999985
Q ss_pred -----------CHHHHHHHHhhcCCCCCCCeeEeecCCCCHHHH
Q 035988 395 -----------SVETYYQESGRAGRDGLPSECLLFFRPADVPRQ 427 (692)
Q Consensus 395 -----------s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~~ 427 (692)
|..+|.||+|||||. .+|.||.+|+..+...+
T Consensus 299 ~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~~l 341 (819)
T TIGR01970 299 TGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQRL 341 (819)
T ss_pred cCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHHhh
Confidence 345799999999999 79999999998766543
No 64
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=4.6e-34 Score=320.26 Aligned_cols=298 Identities=17% Similarity=0.134 Sum_probs=209.7
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHH---HhcC-CeEEEEcccHHHHHHHHHHHHHcCC----CEEEE
Q 035988 90 PAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPA---VLRE-GIALVVSPLLSLIQDQVMCLAALGI----PAHML 161 (692)
Q Consensus 90 ~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpa---l~~~-~~~lvi~Pt~~L~~q~~~~l~~~gi----~~~~~ 161 (692)
-.||++|.++++.++.+++.+++||||+|||+++...+ +... +++||++||++|+.|+.+.+++++. .+..+
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i 192 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKI 192 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccceeEE
Confidence 47999999999999999999999999999999765432 2223 4999999999999999999998752 23233
Q ss_pred ecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHHH
Q 035988 162 TSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGIL 241 (692)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l 241 (692)
.++.... ...+|+|+||+++.... . ..+.++++|||||||++... .+. .+
T Consensus 193 ~~g~~~~-------------~~~~I~VaT~qsl~~~~------~--~~~~~~~~iIvDEaH~~~~~------~~~---~i 242 (501)
T PHA02558 193 YSGTAKD-------------TDAPIVVSTWQSAVKQP------K--EWFDQFGMVIVDECHLFTGK------SLT---SI 242 (501)
T ss_pred ecCcccC-------------CCCCEEEeeHHHHhhch------h--hhccccCEEEEEchhcccch------hHH---HH
Confidence 3333221 15799999999875311 1 13468999999999998632 122 23
Q ss_pred HhhCC-CCCEEEEecccchhhHHH--HHHHhcccceEEEeccC----CCC---cceEE-Eeec-----------------
Q 035988 242 KTQFP-DVPMMALTATATQKVQND--LMEMLHIRKCIKFVSTI----NRP---NLFYM-VREK----------------- 293 (692)
Q Consensus 242 ~~~~~-~~~~i~lSAT~~~~~~~~--i~~~l~~~~~~~~~~~~----~r~---~l~~~-v~~~----------------- 293 (692)
...++ ..++++||||+....... +...+|- +....+. ..+ ...+. +...
T Consensus 243 l~~~~~~~~~lGLTATp~~~~~~~~~~~~~fG~---i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 319 (501)
T PHA02558 243 ITKLDNCKFKFGLTGSLRDGKANILQYVGLFGD---IFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEE 319 (501)
T ss_pred HHhhhccceEEEEeccCCCccccHHHHHHhhCC---ceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHH
Confidence 33343 456899999997532211 1112221 1100000 000 00000 0000
Q ss_pred ---cCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEE
Q 035988 294 ---SSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIV 370 (692)
Q Consensus 294 ---~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILV 370 (692)
..........+.+.+......+.+++|||.++++++.+++.|+..|.++..+||+|+.++|..+++.|++|+..|||
T Consensus 320 ~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLv 399 (501)
T PHA02558 320 IKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIV 399 (501)
T ss_pred HHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEE
Confidence 00001111223333333333678899999999999999999999999999999999999999999999999999999
Q ss_pred ec-cccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecC
Q 035988 371 GT-VAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFR 420 (692)
Q Consensus 371 aT-~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~ 420 (692)
|| +++++|+|+|++++||++.+|.|...|+||+||++|.+..+...++|+
T Consensus 400 aT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D 450 (501)
T PHA02558 400 ASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWD 450 (501)
T ss_pred EEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEE
Confidence 98 899999999999999999999999999999999999987654444443
No 65
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.8e-33 Score=293.39 Aligned_cols=317 Identities=21% Similarity=0.287 Sum_probs=233.6
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHh----cCCeEEEEcccHHHHHHHHHHHHHc-CC---CEEE
Q 035988 89 IPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVL----REGIALVVSPLLSLIQDQVMCLAAL-GI---PAHM 160 (692)
Q Consensus 89 ~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~----~~~~~lvi~Pt~~L~~q~~~~l~~~-gi---~~~~ 160 (692)
.-.+|.||..+....+.+ ++++++|||-|||+++.+-+.. .++++|+++||+-|+.|+...+++. |+ .++.
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ 91 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAA 91 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhheee
Confidence 347899999999888866 9999999999999988766552 2468999999999999999999986 65 5679
Q ss_pred EecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHH
Q 035988 161 LTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGI 240 (692)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~ 240 (692)
++|....+++...|. ..+|+|+||+.+. .+.+....++.++.++|+||||+-. | ++ .|-.+..
T Consensus 92 ltGev~p~~R~~~w~-------~~kVfvaTPQvve-----NDl~~Grid~~dv~~lifDEAHRAv--G-ny--AYv~Va~ 154 (542)
T COG1111 92 LTGEVRPEEREELWA-------KKKVFVATPQVVE-----NDLKAGRIDLDDVSLLIFDEAHRAV--G-NY--AYVFVAK 154 (542)
T ss_pred ecCCCChHHHHHHHh-------hCCEEEeccHHHH-----hHHhcCccChHHceEEEechhhhcc--C-cc--hHHHHHH
Confidence 999999998888877 6799999999875 3455667778899999999999964 2 12 2333222
Q ss_pred -HHhhCCCCCEEEEecccchh--hHHHHHHHhcccceEEEe---------------------------------------
Q 035988 241 -LKTQFPDVPMMALTATATQK--VQNDLMEMLHIRKCIKFV--------------------------------------- 278 (692)
Q Consensus 241 -l~~~~~~~~~i~lSAT~~~~--~~~~i~~~l~~~~~~~~~--------------------------------------- 278 (692)
+.....+..+++|||||... -...+.+.|++....+-.
T Consensus 155 ~y~~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~ 234 (542)
T COG1111 155 EYLRSAKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKP 234 (542)
T ss_pred HHHHhccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHH
Confidence 33333455689999999432 222333444432111000
Q ss_pred ------------ccC--CCCcc------eEEEe-----------------------------------------------
Q 035988 279 ------------STI--NRPNL------FYMVR----------------------------------------------- 291 (692)
Q Consensus 279 ------------~~~--~r~~l------~~~v~----------------------------------------------- 291 (692)
... ...++ .+...
T Consensus 235 ~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~ 314 (542)
T COG1111 235 RLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEAT 314 (542)
T ss_pred HHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhc
Confidence 000 00000 00000
Q ss_pred --------------------------eccCcchHHHHHHHHHHHHhC--CCCCceEEEEeccchHHHHHHHHHHCCCcee
Q 035988 292 --------------------------EKSSVGKVVIDEIAKYIQESY--PNSESGIVYCFSRKECEQVAQELRQRGISAD 343 (692)
Q Consensus 292 --------------------------~~~~~~~~~~~~l~~~l~~~~--~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~ 343 (692)
........+++.+.+++++.+ ..+.++|||++.+.+++.+...|.+.|+.+.
T Consensus 315 ~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~ 394 (542)
T COG1111 315 KGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKAR 394 (542)
T ss_pred ccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcce
Confidence 000000012333444444443 3678999999999999999999999988774
Q ss_pred --Ee-------ccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCe
Q 035988 344 --YY-------HADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSE 414 (692)
Q Consensus 344 --~~-------h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~ 414 (692)
++ ..||+++++.+++++|++|+++|||||++.++|+|+|++++||.|++-.|..-++||.||+||. +.|.
T Consensus 395 ~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Gr 473 (542)
T COG1111 395 VRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGR 473 (542)
T ss_pred eEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCe
Confidence 22 3579999999999999999999999999999999999999999999999999999999999998 7899
Q ss_pred eEeecCCCCH
Q 035988 415 CLLFFRPADV 424 (692)
Q Consensus 415 ~i~l~~~~d~ 424 (692)
++++++.+..
T Consensus 474 v~vLvt~gtr 483 (542)
T COG1111 474 VVVLVTEGTR 483 (542)
T ss_pred EEEEEecCch
Confidence 9999998843
No 66
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=5.1e-34 Score=331.64 Aligned_cols=303 Identities=18% Similarity=0.221 Sum_probs=216.1
Q ss_pred HHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc---CCeEEEEcccHHHHHHHHHHHHH-c----CCCEEEEecCCChh
Q 035988 97 QEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR---EGIALVVSPLLSLIQDQVMCLAA-L----GIPAHMLTSTTSKE 168 (692)
Q Consensus 97 ~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~---~~~~lvi~Pt~~L~~q~~~~l~~-~----gi~~~~~~~~~~~~ 168 (692)
.+++.++.++++++++||||||||.+|.+|++.. .++++|+.|+|+++.|..+.+.. + |..+.+..+.....
T Consensus 11 ~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~~~ 90 (812)
T PRK11664 11 PELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESKV 90 (812)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCcccc
Confidence 4566777789999999999999999999888854 36899999999999999998854 3 34444444332211
Q ss_pred HHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCC
Q 035988 169 DEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDV 248 (692)
Q Consensus 169 ~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~ 248 (692)
....+|+|+||+.+. +.+.....+.++++|||||+|..+ ...++.-.+.. ..+....++.
T Consensus 91 ------------~~~t~I~v~T~G~Ll------r~l~~d~~L~~v~~IIlDEaHER~-l~~Dl~L~ll~-~i~~~lr~~l 150 (812)
T PRK11664 91 ------------GPNTRLEVVTEGILT------RMIQRDPELSGVGLVILDEFHERS-LQADLALALLL-DVQQGLRDDL 150 (812)
T ss_pred ------------CCCCcEEEEChhHHH------HHHhhCCCcCcCcEEEEcCCCccc-cccchHHHHHH-HHHHhCCccc
Confidence 115689999999764 233444567899999999999732 11122211111 1223345688
Q ss_pred CEEEEecccchhhHHHHHHHhcccceEEEeccCCCCcceEEEeeccCcch-HHHHHHHHHHHHhCCCCCceEEEEeccch
Q 035988 249 PMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGK-VVIDEIAKYIQESYPNSESGIVYCFSRKE 327 (692)
Q Consensus 249 ~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~~~~~-~~~~~l~~~l~~~~~~~~~~IIf~~s~~~ 327 (692)
++++||||++... +.++++....+...........+|.......... .....+...+.. ..+.+||||+++++
T Consensus 151 qlilmSATl~~~~---l~~~~~~~~~I~~~gr~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~---~~g~iLVFlpg~~e 224 (812)
T PRK11664 151 KLLIMSATLDNDR---LQQLLPDAPVIVSEGRSFPVERRYQPLPAHQRFDEAVARATAELLRQ---ESGSLLLFLPGVGE 224 (812)
T ss_pred eEEEEecCCCHHH---HHHhcCCCCEEEecCccccceEEeccCchhhhHHHHHHHHHHHHHHh---CCCCEEEEcCCHHH
Confidence 9999999998653 4455543322222211111112222111111111 111223333332 46889999999999
Q ss_pred HHHHHHHHHH---CCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEEeCCCC----------
Q 035988 328 CEQVAQELRQ---RGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSK---------- 394 (692)
Q Consensus 328 ~e~l~~~L~~---~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~~P~---------- 394 (692)
++.+++.|.+ .++.+..+||+|+.++|..+++.|.+|+.+|||||+++++|||+|+|++||++++|+
T Consensus 225 i~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~ 304 (812)
T PRK11664 225 IQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGL 304 (812)
T ss_pred HHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCc
Confidence 9999999987 578899999999999999999999999999999999999999999999999998875
Q ss_pred --------CHHHHHHHHhhcCCCCCCCeeEeecCCCCHHH
Q 035988 395 --------SVETYYQESGRAGRDGLPSECLLFFRPADVPR 426 (692)
Q Consensus 395 --------s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~ 426 (692)
|.++|.||+|||||. .+|.||.+|+..+...
T Consensus 305 ~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~~~ 343 (812)
T PRK11664 305 TRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQAER 343 (812)
T ss_pred ceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHHhh
Confidence 346899999999999 6999999999876543
No 67
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=9.2e-33 Score=314.70 Aligned_cols=328 Identities=19% Similarity=0.196 Sum_probs=237.4
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHh---cCCeEEEEcccHHHHHHHHHHHHHc-
Q 035988 79 ADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVL---REGIALVVSPLLSLIQDQVMCLAAL- 154 (692)
Q Consensus 79 ~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~---~~~~~lvi~Pt~~L~~q~~~~l~~~- 154 (692)
+.++..+.+|+ .|+++|..++..+..|+ |+.|.||+|||++|.+|++. .+..++|++||+.||.|.+..+..+
T Consensus 67 vrea~~R~~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~G~~v~VvTpt~~LA~qd~e~~~~l~ 143 (790)
T PRK09200 67 VREAAKRVLGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVY 143 (790)
T ss_pred HHHHHHHHhCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 44555566888 78899999888887776 99999999999999999984 4789999999999999999887764
Q ss_pred ---CCCEEEEecCCC-hhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHH---hhhhcCCceEEEEeCcccccc-
Q 035988 155 ---GIPAHMLTSTTS-KEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLE---KCHHAGRLSLISIDEAHCCSQ- 226 (692)
Q Consensus 155 ---gi~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~---~~~~~~~l~~iVIDEaH~l~~- 226 (692)
|+++.++.|+.+ ..++...+ .++|+|+||..+.- ..+.+.+. ....+..+.++||||||.++=
T Consensus 144 ~~lGl~v~~i~g~~~~~~~r~~~y--------~~dIvygT~~~l~f-DyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiD 214 (790)
T PRK09200 144 EFLGLTVGLNFSDIDDASEKKAIY--------EADIIYTTNSELGF-DYLRDNLADSKEDKVQRPLNYAIIDEIDSILLD 214 (790)
T ss_pred hhcCCeEEEEeCCCCcHHHHHHhc--------CCCEEEECCccccc-hhHHhccccchhhhcccccceEEEeccccceec
Confidence 999999999887 54433221 68999999998831 12222221 122457899999999998751
Q ss_pred ----------cCCCchHHHHHHHHHHhhCC--------------------------------------------------
Q 035988 227 ----------WGHDFRPDYKNLGILKTQFP-------------------------------------------------- 246 (692)
Q Consensus 227 ----------~g~~fr~~~~~l~~l~~~~~-------------------------------------------------- 246 (692)
.+..-...|.....+...+.
T Consensus 215 ea~tpliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~ 294 (790)
T PRK09200 215 EAQTPLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALR 294 (790)
T ss_pred cCCCceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHH
Confidence 00000011111111111000
Q ss_pred -------CC-------------------------------------------------------------CEEEEecccc
Q 035988 247 -------DV-------------------------------------------------------------PMMALTATAT 258 (692)
Q Consensus 247 -------~~-------------------------------------------------------------~~i~lSAT~~ 258 (692)
+. .+.+||+|+.
T Consensus 295 A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~ 374 (790)
T PRK09200 295 AHVLFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAK 374 (790)
T ss_pred HHHHhhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCCh
Confidence 00 1122444443
Q ss_pred hhhHHHHHHHhcccceEEEeccCCCCcceEEEeec-cCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHH
Q 035988 259 QKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREK-SSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQ 337 (692)
Q Consensus 259 ~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~-~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~ 337 (692)
.. ...+.+..++ .++.-|.++|......... ......+...+.+.+......+.++||||+|++.++.++..|..
T Consensus 375 t~-~~e~~~~Y~l---~v~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~ 450 (790)
T PRK09200 375 TE-EKEFFEVYNM---EVVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDE 450 (790)
T ss_pred HH-HHHHHHHhCC---cEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHH
Confidence 21 2233333333 2334466666554322211 11234567778888876545789999999999999999999999
Q ss_pred CCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCC---CCcc-----EEEEeCCCCCHHHHHHHHhhcCCC
Q 035988 338 RGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINK---PDVR-----FVIHHSLSKSVETYYQESGRAGRD 409 (692)
Q Consensus 338 ~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDi---p~v~-----~VI~~~~P~s~~~y~Qr~GRagR~ 409 (692)
.|+++..+||+++..++..+...++.| +|+|||++++||+|+ |+|. +||++++|.|...|.||+||+||.
T Consensus 451 ~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~ 528 (790)
T PRK09200 451 AGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQ 528 (790)
T ss_pred CCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCC
Confidence 999999999999999988888887776 699999999999999 6998 999999999999999999999999
Q ss_pred CCCCeeEeecCCCCH
Q 035988 410 GLPSECLLFFRPADV 424 (692)
Q Consensus 410 G~~g~~i~l~~~~d~ 424 (692)
|.+|.++.|++..|.
T Consensus 529 G~~G~s~~~is~eD~ 543 (790)
T PRK09200 529 GDPGSSQFFISLEDD 543 (790)
T ss_pred CCCeeEEEEEcchHH
Confidence 999999999998764
No 68
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=1.6e-33 Score=327.85 Aligned_cols=332 Identities=22% Similarity=0.290 Sum_probs=252.4
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc-----CCeEEEEcccHHHHHHHHHHHHHc
Q 035988 80 DDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR-----EGIALVVSPLLSLIQDQVMCLAAL 154 (692)
Q Consensus 80 ~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~-----~~~~lvi~Pt~~L~~q~~~~l~~~ 154 (692)
...+.+ .|...++++|.+|+..+.+|+|++|..|||||||+||++|++.+ ..++|+|.||++|++||.++++++
T Consensus 60 ~~~l~~-~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~ 138 (851)
T COG1205 60 KSALVK-AGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLREL 138 (851)
T ss_pred HHHHHH-hccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHH
Confidence 444443 47778999999999999999999999999999999999999854 357799999999999999999986
Q ss_pred ----C--CCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCccccc-cc
Q 035988 155 ----G--IPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCS-QW 227 (692)
Q Consensus 155 ----g--i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~-~~ 227 (692)
+ +.+..++|+....++..++. . .++|+++||+||..+ -+...-.....+.++.+|||||+|.+- -+
T Consensus 139 ~~~~~~~v~~~~y~Gdt~~~~r~~~~~----~--pp~IllTNpdMLh~~-llr~~~~~~~~~~~Lk~lVvDElHtYrGv~ 211 (851)
T COG1205 139 ISDLPGKVTFGRYTGDTPPEERRAIIR----N--PPDILLTNPDMLHYL-LLRNHDAWLWLLRNLKYLVVDELHTYRGVQ 211 (851)
T ss_pred HHhCCCcceeeeecCCCChHHHHHHHh----C--CCCEEEeCHHHHHHH-hccCcchHHHHHhcCcEEEEecceeccccc
Confidence 4 77888999998887654433 3 899999999998641 111111122234569999999999984 36
Q ss_pred CCCchHHHHHHHHHHhhCC-CCCEEEEecccchhhHHHHHHHhcccceEEEeccCCCCcceEEEeecc-------CcchH
Q 035988 228 GHDFRPDYKNLGILKTQFP-DVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKS-------SVGKV 299 (692)
Q Consensus 228 g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~-------~~~~~ 299 (692)
|.+....+++|..+....+ +.++|+.|||.... .+...+.++..-...+.....+....+.+.... .....
T Consensus 212 GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s 290 (851)
T COG1205 212 GSEVALLLRRLLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRS 290 (851)
T ss_pred hhHHHHHHHHHHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhcccc
Confidence 7777888888877777665 56789999998764 344555555444332332222222222222222 00112
Q ss_pred HHHHHHHHHHHhCCCCCceEEEEeccchHHHHH----HHHHHCC----CceeEeccCCCHHHHHHHHHHHhcCCCcEEEe
Q 035988 300 VIDEIAKYIQESYPNSESGIVYCFSRKECEQVA----QELRQRG----ISADYYHADMDINAREKVHMRWSKNKLQVIVG 371 (692)
Q Consensus 300 ~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~----~~L~~~g----~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVa 371 (692)
....+..++......+-++|+|+.|++.++.++ ..+...+ ..+..|+|+|..++|..+...|+.|++.++++
T Consensus 291 ~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~s 370 (851)
T COG1205 291 ALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIA 370 (851)
T ss_pred hHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEec
Confidence 233333333333347889999999999999998 4555555 67899999999999999999999999999999
Q ss_pred ccccccccCCCCccEEEEeCCCC-CHHHHHHHHhhcCCCCCCCeeEeecC
Q 035988 372 TVAFGMGINKPDVRFVIHHSLSK-SVETYYQESGRAGRDGLPSECLLFFR 420 (692)
Q Consensus 372 T~~~~~GIDip~v~~VI~~~~P~-s~~~y~Qr~GRagR~G~~g~~i~l~~ 420 (692)
|+++..|||+.+++.||.++.|. +..++.|+.|||||.++.+..++.+.
T Consensus 371 t~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 371 TNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred chhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeC
Confidence 99999999999999999999999 99999999999999997777777666
No 69
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=2.2e-32 Score=308.69 Aligned_cols=331 Identities=16% Similarity=0.166 Sum_probs=230.5
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHh---cCCeEEEEcccHHHHHHHHHHHH----
Q 035988 80 DDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVL---REGIALVVSPLLSLIQDQVMCLA---- 152 (692)
Q Consensus 80 ~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~---~~~~~lvi~Pt~~L~~q~~~~l~---- 152 (692)
.++..+.+| ++|+|.|++..+..++..++.|+||+|||++|.+|++. .+..++|++|+++|+.|+.+.+.
T Consensus 60 rEa~~R~lg---lrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~g~~V~VVTpn~yLA~Rdae~m~~l~~ 136 (762)
T TIGR03714 60 READKRVLG---MFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVYE 136 (762)
T ss_pred HHHHHhhcC---CCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhcCCceEEeCCCHHHHHHHHHHHHHHHh
Confidence 333444456 47788888887777777899999999999999999875 35789999999999999999884
Q ss_pred HcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHh---hhhcCCceEEEEeCcccccccC-
Q 035988 153 ALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEK---CHHAGRLSLISIDEAHCCSQWG- 228 (692)
Q Consensus 153 ~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~---~~~~~~l~~iVIDEaH~l~~~g- 228 (692)
.+|+++..+.++............. ...++|+|+||+++.. ..+.+.+.. ...+..+.++||||||+++-..
T Consensus 137 ~LGLsv~~~~~~s~~~~~~~~~rr~---~y~~dIvygTp~~Lgf-DyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDea 212 (762)
T TIGR03714 137 WLGLTVSLGVVDDPDEEYDANEKRK---IYNSDIVYTTNSALGF-DYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSA 212 (762)
T ss_pred hcCCcEEEEECCCCccccCHHHHHH---hCCCCEEEECchhhhh-hHHHHHhhcchhhcccccCcEEEEecHhhHhhccC
Confidence 4599988877652211111001111 1268999999999842 123333322 2345789999999999974110
Q ss_pred --------C--CchHHHHHHHHHHhhCC----------------------------------------------------
Q 035988 229 --------H--DFRPDYKNLGILKTQFP---------------------------------------------------- 246 (692)
Q Consensus 229 --------~--~fr~~~~~l~~l~~~~~---------------------------------------------------- 246 (692)
. .-...|.....+...+.
T Consensus 213 rtpliisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~ 292 (762)
T TIGR03714 213 QTPLVISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAH 292 (762)
T ss_pred cCCeeeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHH
Confidence 0 00011111111111100
Q ss_pred -----C-------------------------------------------------------------CCEEEEecccchh
Q 035988 247 -----D-------------------------------------------------------------VPMMALTATATQK 260 (692)
Q Consensus 247 -----~-------------------------------------------------------------~~~i~lSAT~~~~ 260 (692)
+ ..+.+||+|+...
T Consensus 293 ~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~ 372 (762)
T TIGR03714 293 YLFKRNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVA 372 (762)
T ss_pred HHHhcCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhH
Confidence 0 0122355554322
Q ss_pred hHHHHHHHhcccceEEEeccCCCCcceEEEeec-cCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCC
Q 035988 261 VQNDLMEMLHIRKCIKFVSTINRPNLFYMVREK-SSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRG 339 (692)
Q Consensus 261 ~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~-~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g 339 (692)
...+.+..++ .++.-|.++|......... ......++..+.+.+.+.+..+.++||||+|++.++.++..|...|
T Consensus 373 -~~Ef~~iY~l---~v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~g 448 (762)
T TIGR03714 373 -EKEFIETYSL---SVVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREG 448 (762)
T ss_pred -HHHHHHHhCC---CEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCC
Confidence 2223333332 2344566666554432111 1123456778888887765588999999999999999999999999
Q ss_pred CceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCC---------CccEEEEeCCCCCHHHHHHHHhhcCCCC
Q 035988 340 ISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKP---------DVRFVIHHSLSKSVETYYQESGRAGRDG 410 (692)
Q Consensus 340 ~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip---------~v~~VI~~~~P~s~~~y~Qr~GRagR~G 410 (692)
+++..+||+++..++..+.+.++.| .|+|||++++||+|++ ++.+|+++++|....+ .||+||+||.|
T Consensus 449 i~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG 525 (762)
T TIGR03714 449 IPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQG 525 (762)
T ss_pred CCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCC
Confidence 9999999999999998888877777 6999999999999999 9999999999988777 99999999999
Q ss_pred CCCeeEeecCCCCH
Q 035988 411 LPSECLLFFRPADV 424 (692)
Q Consensus 411 ~~g~~i~l~~~~d~ 424 (692)
.+|.++.|++..|.
T Consensus 526 ~~G~s~~~is~eD~ 539 (762)
T TIGR03714 526 DPGSSQFFVSLEDD 539 (762)
T ss_pred CceeEEEEEccchh
Confidence 99999999998774
No 70
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=4.4e-33 Score=319.88 Aligned_cols=325 Identities=23% Similarity=0.315 Sum_probs=236.9
Q ss_pred CcHHHHHHHHHhcCCCCCCHHHHHHHHHHH-cCCCEEEEecCCChhHHHHHHHHHhc----CCeEEEEcccHHHHHHHHH
Q 035988 75 WDSRADDVRLNVFGIPAYRANQQEIINAVL-SGRDVLVIMAAGGGKSLCYQLPAVLR----EGIALVVSPLLSLIQDQVM 149 (692)
Q Consensus 75 ~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il-~g~dviv~apTGsGKTl~~~lpal~~----~~~~lvi~Pt~~L~~q~~~ 149 (692)
.++.+.+.++ ..|+..+.|.|+.++...+ .++|+++++|||||||+++++.++.. ++++++|+|+++|+++.++
T Consensus 16 ~~~~v~~i~~-~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~ 94 (766)
T COG1204 16 LDDRVLEILK-GDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYE 94 (766)
T ss_pred ccHHHHHHhc-cCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHH
Confidence 4555566555 4577777888887777655 56999999999999999998876532 4799999999999999999
Q ss_pred HHH---HcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccc
Q 035988 150 CLA---ALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQ 226 (692)
Q Consensus 150 ~l~---~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~ 226 (692)
+++ .+|+++...+|+....... ..+++|+|+|||++....+ +.......+++|||||+|.+.+
T Consensus 95 ~~~~~~~~GirV~~~TgD~~~~~~~---------l~~~~ViVtT~EK~Dsl~R-----~~~~~~~~V~lvViDEiH~l~d 160 (766)
T COG1204 95 EFSRLEELGIRVGISTGDYDLDDER---------LARYDVIVTTPEKLDSLTR-----KRPSWIEEVDLVVIDEIHLLGD 160 (766)
T ss_pred HhhhHHhcCCEEEEecCCcccchhh---------hccCCEEEEchHHhhHhhh-----cCcchhhcccEEEEeeeeecCC
Confidence 998 6799999999998754311 1279999999999864333 1122456899999999999875
Q ss_pred c--CCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceE--EEeccCCCCcceE-EEeecc--Cc--c
Q 035988 227 W--GHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCI--KFVSTINRPNLFY-MVREKS--SV--G 297 (692)
Q Consensus 227 ~--g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~--~~~~~~~r~~l~~-~v~~~~--~~--~ 297 (692)
. |.-..... ...+...+.++++++|||.++ ..++..|++-.... ....+..++.... .+.... .+ .
T Consensus 161 ~~RG~~lE~iv---~r~~~~~~~~rivgLSATlpN--~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~ 235 (766)
T COG1204 161 RTRGPVLESIV---ARMRRLNELIRIVGLSATLPN--AEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWP 235 (766)
T ss_pred cccCceehhHH---HHHHhhCcceEEEEEeeecCC--HHHHHHHhCCcccccCCCCcccccCCccceEEEEecCcccccc
Confidence 3 42222222 245555566899999999997 57889999866431 1112222222111 111111 10 1
Q ss_pred hHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHC---------------------C----------------C
Q 035988 298 KVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQR---------------------G----------------I 340 (692)
Q Consensus 298 ~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~---------------------g----------------~ 340 (692)
....+.+...+......++++||||+|++.+...+..|... + .
T Consensus 236 ~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~ 315 (766)
T COG1204 236 LLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLR 315 (766)
T ss_pred ccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHh
Confidence 11223344444444458999999999999999999998730 0 1
Q ss_pred ceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEE----EeC-----CCCCHHHHHHHHhhcCCCCC
Q 035988 341 SADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVI----HHS-----LSKSVETYYQESGRAGRDGL 411 (692)
Q Consensus 341 ~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI----~~~-----~P~s~~~y~Qr~GRagR~G~ 411 (692)
.+.++|+||+.++|..+.+.|+.|.++|||||+.++.|+|+|.-++|| .|+ .+-+.-+|.|+.|||||.|-
T Consensus 316 GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~ 395 (766)
T COG1204 316 GVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGY 395 (766)
T ss_pred CccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCc
Confidence 366899999999999999999999999999999999999999877776 455 45578999999999999987
Q ss_pred C--CeeEeec
Q 035988 412 P--SECLLFF 419 (692)
Q Consensus 412 ~--g~~i~l~ 419 (692)
. |.++++.
T Consensus 396 d~~G~~~i~~ 405 (766)
T COG1204 396 DDYGEAIILA 405 (766)
T ss_pred CCCCcEEEEe
Confidence 6 6666665
No 71
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=1.6e-32 Score=307.73 Aligned_cols=327 Identities=20% Similarity=0.219 Sum_probs=235.8
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHh---cCCeEEEEcccHHHHHHHHHHHHHc-
Q 035988 79 ADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVL---REGIALVVSPLLSLIQDQVMCLAAL- 154 (692)
Q Consensus 79 ~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~---~~~~~lvi~Pt~~L~~q~~~~l~~~- 154 (692)
+.++..+.+|+ .|++.|......+..|+ |+.|+||+|||++|.+|++. .+..+.|++||..||.|.++.+..+
T Consensus 45 vrEa~~R~lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~~V~VvTpt~~LA~qdae~~~~l~ 121 (745)
T TIGR00963 45 VREASKRVLGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVY 121 (745)
T ss_pred HHHHHHHHhCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 34555666787 57788888777766665 99999999999999999863 3678999999999999999988764
Q ss_pred ---CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhh-hchHHHHHHH---HhhhhcCCceEEEEeCcccccc-
Q 035988 155 ---GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKI-SKSKRFMSKL---EKCHHAGRLSLISIDEAHCCSQ- 226 (692)
Q Consensus 155 ---gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l-~~~~~~~~~l---~~~~~~~~l~~iVIDEaH~l~~- 226 (692)
|+++.++.|+.+...+...+ .++|+|+||..+ .+ .+.+.+ .....+..+.++||||+|.+.-
T Consensus 122 ~~LGLsv~~i~g~~~~~~r~~~y--------~~dIvyGT~~rlgfD--yLrd~~~~~~~~~~~r~l~~aIIDEaDs~LID 191 (745)
T TIGR00963 122 RFLGLSVGLILSGMSPEERREAY--------ACDITYGTNNELGFD--YLRDNMAHSKEEKVQRPFHFAIIDEVDSILID 191 (745)
T ss_pred ccCCCeEEEEeCCCCHHHHHHhc--------CCCEEEECCCchhhH--HHhcccccchhhhhccccceeEeecHHHHhHH
Confidence 89999999988866443332 579999999987 22 122211 1233567899999999998752
Q ss_pred --------cCC--CchHHHHHHHHHHhhCC---------CC---------------------------------------
Q 035988 227 --------WGH--DFRPDYKNLGILKTQFP---------DV--------------------------------------- 248 (692)
Q Consensus 227 --------~g~--~fr~~~~~l~~l~~~~~---------~~--------------------------------------- 248 (692)
-|. .-...|.....+.+.+. ..
T Consensus 192 eaRtpLiisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~ 271 (745)
T TIGR00963 192 EARTPLIISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALK 271 (745)
T ss_pred hhhhHHhhcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHH
Confidence 010 00001111000000000 00
Q ss_pred ----------------------------------------------------------------------CEEEEecccc
Q 035988 249 ----------------------------------------------------------------------PMMALTATAT 258 (692)
Q Consensus 249 ----------------------------------------------------------------------~~i~lSAT~~ 258 (692)
.+.+||+|+.
T Consensus 272 A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~ 351 (745)
T TIGR00963 272 AKELFEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAK 351 (745)
T ss_pred HHHHHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcH
Confidence 0112444443
Q ss_pred hhhHHHHHHHhcccceEEEeccCCCCcceEEEeecc-CcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHH
Q 035988 259 QKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKS-SVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQ 337 (692)
Q Consensus 259 ~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~-~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~ 337 (692)
.. ...+.+..++. ++.-|.++|.......... .....++..+.+.+...+..+.|+||||+|++.++.++..|.+
T Consensus 352 te-~~E~~~iY~l~---vv~IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~ 427 (745)
T TIGR00963 352 TE-EEEFEKIYNLE---VVVVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKE 427 (745)
T ss_pred HH-HHHHHHHhCCC---EEEeCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHH
Confidence 21 22233333322 3344555665443322111 1234567778777766666899999999999999999999999
Q ss_pred CCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCC-------ccEEEEeCCCCCHHHHHHHHhhcCCCC
Q 035988 338 RGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPD-------VRFVIHHSLSKSVETYYQESGRAGRDG 410 (692)
Q Consensus 338 ~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~-------v~~VI~~~~P~s~~~y~Qr~GRagR~G 410 (692)
.|+++..+||+ ..+|+..+..|..+...|+|||+++|||+|++. ..+||+++.|.|...|.|+.||+||.|
T Consensus 428 ~gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG 505 (745)
T TIGR00963 428 RGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQG 505 (745)
T ss_pred cCCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCC
Confidence 99999999999 779999999999999999999999999999998 559999999999999999999999999
Q ss_pred CCCeeEeecCCCCH
Q 035988 411 LPSECLLFFRPADV 424 (692)
Q Consensus 411 ~~g~~i~l~~~~d~ 424 (692)
.+|.+..|++..|-
T Consensus 506 ~~G~s~~~ls~eD~ 519 (745)
T TIGR00963 506 DPGSSRFFLSLEDN 519 (745)
T ss_pred CCcceEEEEeccHH
Confidence 99999999998874
No 72
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=6.1e-32 Score=320.23 Aligned_cols=318 Identities=19% Similarity=0.250 Sum_probs=229.3
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc----CCeEEEEcccHHHHHHHHHHHHHc-CC---CEEEE
Q 035988 90 PAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR----EGIALVVSPLLSLIQDQVMCLAAL-GI---PAHML 161 (692)
Q Consensus 90 ~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~----~~~~lvi~Pt~~L~~q~~~~l~~~-gi---~~~~~ 161 (692)
-.+|+||.+++..++.+ ++++++|||+|||+++++++... ++++|||+||++|+.|+.+.++++ ++ ++..+
T Consensus 14 ~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~ 92 (773)
T PRK13766 14 IEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVF 92 (773)
T ss_pred CCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEE
Confidence 37899999999988877 99999999999999998776532 689999999999999999999875 44 67778
Q ss_pred ecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHHH
Q 035988 162 TSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGIL 241 (692)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l 241 (692)
+|+.....+...+. ..+|+|+||+.+.. +.+.....+.+++++||||||++.... .+.. + +..+
T Consensus 93 ~g~~~~~~r~~~~~-------~~~iiv~T~~~l~~-----~l~~~~~~~~~~~liVvDEaH~~~~~~-~~~~-i--~~~~ 156 (773)
T PRK13766 93 TGEVSPEKRAELWE-------KAKVIVATPQVIEN-----DLIAGRISLEDVSLLIFDEAHRAVGNY-AYVY-I--AERY 156 (773)
T ss_pred eCCCCHHHHHHHHh-------CCCEEEECHHHHHH-----HHHcCCCChhhCcEEEEECCccccccc-cHHH-H--HHHH
Confidence 88877665544443 57999999997753 222344456789999999999986321 1111 1 1233
Q ss_pred HhhCCCCCEEEEecccchhh--HHHHHHHhcccceEEEeccC--------CCCcceEEEe--------------------
Q 035988 242 KTQFPDVPMMALTATATQKV--QNDLMEMLHIRKCIKFVSTI--------NRPNLFYMVR-------------------- 291 (692)
Q Consensus 242 ~~~~~~~~~i~lSAT~~~~~--~~~i~~~l~~~~~~~~~~~~--------~r~~l~~~v~-------------------- 291 (692)
....+...+++||||+.... ...+.+.|++..... ...+ .++.+.+...
T Consensus 157 ~~~~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~-~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~ 235 (773)
T PRK13766 157 HEDAKNPLVLGLTASPGSDEEKIKEVCENLGIEHVEV-RTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDR 235 (773)
T ss_pred HhcCCCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEE-cCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHH
Confidence 34444556899999984321 122223332211100 0000 0000000000
Q ss_pred --------------------------------------------------------------------------------
Q 035988 292 -------------------------------------------------------------------------------- 291 (692)
Q Consensus 292 -------------------------------------------------------------------------------- 291 (692)
T Consensus 236 l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~ 315 (773)
T PRK13766 236 LKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEAR 315 (773)
T ss_pred HHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhcc
Confidence
Q ss_pred ------------------------eccCcchHHHHHHHHHHHHhC--CCCCceEEEEeccchHHHHHHHHHHCCCceeEe
Q 035988 292 ------------------------EKSSVGKVVIDEIAKYIQESY--PNSESGIVYCFSRKECEQVAQELRQRGISADYY 345 (692)
Q Consensus 292 ------------------------~~~~~~~~~~~~l~~~l~~~~--~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~ 345 (692)
........+++.|.+++.+.. ..+.++||||+++..|+.+++.|...|+.+..+
T Consensus 316 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~ 395 (773)
T PRK13766 316 SSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRF 395 (773)
T ss_pred ccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEE
Confidence 000000112334444554432 377899999999999999999999999999999
Q ss_pred ccC--------CCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEe
Q 035988 346 HAD--------MDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLL 417 (692)
Q Consensus 346 h~~--------~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~ 417 (692)
||. |++.+|..++++|++|+.+|||||+++++|+|+|++++||+||+|.+...|+||+||+||.|. |.+++
T Consensus 396 ~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~ 474 (773)
T PRK13766 396 VGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVV 474 (773)
T ss_pred EccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEE
Confidence 886 999999999999999999999999999999999999999999999999999999999999864 88888
Q ss_pred ecCCCCHHH
Q 035988 418 FFRPADVPR 426 (692)
Q Consensus 418 l~~~~d~~~ 426 (692)
++..+....
T Consensus 475 l~~~~t~ee 483 (773)
T PRK13766 475 LIAKGTRDE 483 (773)
T ss_pred EEeCCChHH
Confidence 888766544
No 73
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=1.9e-31 Score=307.27 Aligned_cols=325 Identities=18% Similarity=0.278 Sum_probs=242.0
Q ss_pred CCCHHHHHHHHHHHcC---CCEEEEecCCChhHHHHHHHH---HhcCCeEEEEcccHHHHHHHHHHHHH-cCCCEEEEec
Q 035988 91 AYRANQQEIINAVLSG---RDVLVIMAAGGGKSLCYQLPA---VLREGIALVVSPLLSLIQDQVMCLAA-LGIPAHMLTS 163 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~g---~dviv~apTGsGKTl~~~lpa---l~~~~~~lvi~Pt~~L~~q~~~~l~~-~gi~~~~~~~ 163 (692)
.+++.|.++++.+..+ +++++.||||||||.+|+.++ +..++.+||++|+++|+.|+++.+++ +|..+..++|
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s 223 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHS 223 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 6899999999999974 789999999999999998654 34578999999999999999999987 6899999999
Q ss_pred CCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHH--HHHHHHH
Q 035988 164 TTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPD--YKNLGIL 241 (692)
Q Consensus 164 ~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~--~~~l~~l 241 (692)
+.+..++...+..+..+ .++|+|+|+..+.. .+.++++|||||+|..+.++.+ .+. .+.+..+
T Consensus 224 ~~s~~~r~~~~~~~~~g--~~~IVVgTrsal~~------------p~~~l~liVvDEeh~~s~~~~~-~p~y~~r~va~~ 288 (679)
T PRK05580 224 GLSDGERLDEWRKAKRG--EAKVVIGARSALFL------------PFKNLGLIIVDEEHDSSYKQQE-GPRYHARDLAVV 288 (679)
T ss_pred CCCHHHHHHHHHHHHcC--CCCEEEeccHHhcc------------cccCCCEEEEECCCccccccCc-CCCCcHHHHHHH
Confidence 99988888888877766 78999999986531 3468999999999998755533 333 3566667
Q ss_pred HhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEeccCC---CCcceEEEeec---cCcchHHHHHHHHHHHHhCCCC
Q 035988 242 KTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTIN---RPNLFYMVREK---SSVGKVVIDEIAKYIQESYPNS 315 (692)
Q Consensus 242 ~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~---r~~l~~~v~~~---~~~~~~~~~~l~~~l~~~~~~~ 315 (692)
+....+.+++++|||++......+.. +..........+. .|.+....... .......-..+.+.+++....+
T Consensus 289 ra~~~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~~g 366 (679)
T PRK05580 289 RAKLENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRLERG 366 (679)
T ss_pred HhhccCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHHHcC
Confidence 77778999999999998766554432 1111122222221 22222111100 0000112244556666555578
Q ss_pred CceEEEEecc------------------------------------------------------------chHHHHHHHH
Q 035988 316 ESGIVYCFSR------------------------------------------------------------KECEQVAQEL 335 (692)
Q Consensus 316 ~~~IIf~~s~------------------------------------------------------------~~~e~l~~~L 335 (692)
+++|||+|++ ..++.+++.|
T Consensus 367 ~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l 446 (679)
T PRK05580 367 EQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEEL 446 (679)
T ss_pred CeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHH
Confidence 8999998753 1456788888
Q ss_pred HHC--CCceeEeccCCC--HHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEEeCC--CC----------CHHHH
Q 035988 336 RQR--GISADYYHADMD--INAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSL--SK----------SVETY 399 (692)
Q Consensus 336 ~~~--g~~v~~~h~~~~--~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~~--P~----------s~~~y 399 (692)
++. +.++..+|+++. .++++.+++.|++|+.+|||+|+++++|+|+|+|++|+.++. +- ....|
T Consensus 447 ~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l 526 (679)
T PRK05580 447 AELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLL 526 (679)
T ss_pred HHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHH
Confidence 876 788999999986 467999999999999999999999999999999999865544 32 34679
Q ss_pred HHHHhhcCCCCCCCeeEeecCCCCHHHHHHHHh
Q 035988 400 YQESGRAGRDGLPSECLLFFRPADVPRQSSMVF 432 (692)
Q Consensus 400 ~Qr~GRagR~G~~g~~i~l~~~~d~~~~~~l~~ 432 (692)
.|++||+||.+..|.+++.....+-..+..+..
T Consensus 527 ~q~~GRagR~~~~g~viiqT~~p~~~~~~~~~~ 559 (679)
T PRK05580 527 TQVAGRAGRAEKPGEVLIQTYHPEHPVIQALLA 559 (679)
T ss_pred HHHHhhccCCCCCCEEEEEeCCCCCHHHHHHHh
Confidence 999999999999999998765555455444443
No 74
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.8e-34 Score=271.27 Aligned_cols=311 Identities=17% Similarity=0.211 Sum_probs=238.1
Q ss_pred cCCCCCccccccccCCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhcC------
Q 035988 58 YGGSSSTAVENWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLRE------ 131 (692)
Q Consensus 58 ~g~~~~~~~~~w~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~~------ 131 (692)
+|+-+....+.|. .|.+.+++++++.. .||..|.+.|.++||...-|.|++++|..|.|||.+|.+..+..-
T Consensus 33 kgsyv~ihssgfr-dfllkpellraivd-cgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~ 110 (387)
T KOG0329|consen 33 KGSYVSIHSSGFR-DFLLKPELLRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQ 110 (387)
T ss_pred cCcEEEEeccchh-hhhcCHHHHHHHHh-ccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCe
Confidence 3444455555555 78899999999986 599999999999999999999999999999999999999888652
Q ss_pred CeEEEEcccHHHHHHHHHHHHHc-----CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHh
Q 035988 132 GIALVVSPLLSLIQDQVMCLAAL-----GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEK 206 (692)
Q Consensus 132 ~~~lvi~Pt~~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~ 206 (692)
-.++|++.||+|+-|+.++..++ ++++.++.|+.........+.. .++|+++||+++....+ ++
T Consensus 111 vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~------~PhivVgTPGrilALvr-----~k 179 (387)
T KOG0329|consen 111 VSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN------CPHIVVGTPGRILALVR-----NR 179 (387)
T ss_pred EEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC------CCeEEEcCcHHHHHHHH-----hc
Confidence 36899999999999999887765 7899999999987755544432 68999999998864332 45
Q ss_pred hhhcCCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEeccCCC---
Q 035988 207 CHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINR--- 283 (692)
Q Consensus 207 ~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r--- 283 (692)
..+++++..+|+|||+.+.++- +.|.+... .++...+..|++.||||++.+++.-..+++..+..+.+.....-
T Consensus 180 ~l~lk~vkhFvlDEcdkmle~l-DMrRDvQE--ifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLH 256 (387)
T KOG0329|consen 180 SLNLKNVKHFVLDECDKMLEQL-DMRRDVQE--IFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLH 256 (387)
T ss_pred cCchhhcceeehhhHHHHHHHH-HHHHHHHH--HhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhh
Confidence 6678899999999999998754 35555554 44555568899999999999988877777766554433222110
Q ss_pred CcceEEEeeccCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhc
Q 035988 284 PNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSK 363 (692)
Q Consensus 284 ~~l~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~ 363 (692)
.-..|.+.-+...++.++..|++.+ .-..++||+.|... | + |
T Consensus 257 GLqQ~YvkLke~eKNrkl~dLLd~L-----eFNQVvIFvKsv~R-------l--------------~----------f-- 298 (387)
T KOG0329|consen 257 GLQQYYVKLKENEKNRKLNDLLDVL-----EFNQVVIFVKSVQR-------L--------------S----------F-- 298 (387)
T ss_pred hHHHHHHhhhhhhhhhhhhhhhhhh-----hhcceeEeeehhhh-------h--------------h----------h--
Confidence 1112233333333344445555544 45689999988654 0 0 2
Q ss_pred CCCcEEEeccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCH
Q 035988 364 NKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADV 424 (692)
Q Consensus 364 g~~~ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~ 424 (692)
..+ +|||++||+|+|+..++.||+||+|.+.++|+||+|||||.|..|.++.|++..+-
T Consensus 299 -~kr-~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~d 357 (387)
T KOG0329|consen 299 -QKR-LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEND 357 (387)
T ss_pred -hhh-hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhh
Confidence 223 89999999999999999999999999999999999999999999999999987653
No 75
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=1.1e-30 Score=299.51 Aligned_cols=374 Identities=21% Similarity=0.242 Sum_probs=294.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCCccccccccCCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 035988 25 KQLVDRQDQLYERQSELKSLLEAFEASRGSPIQYGGSSSTAVENWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVL 104 (692)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il 104 (692)
..+.+.+++..+...++...+-+..+........ .|+.+...++.+...|+| .-||-|..||+.+.
T Consensus 542 ~~W~k~K~K~~~~v~diA~eLi~lyA~R~~~~G~-------------af~~d~~~q~~F~~~FPy-eET~DQl~AI~eVk 607 (1139)
T COG1197 542 GAWKKAKAKARKKVRDIAAELIKLYAKRQAKKGF-------------AFPPDTEWQEEFEASFPY-EETPDQLKAIEEVK 607 (1139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-------------CCCCChHHHHHHHhcCCC-cCCHHHHHHHHHHH
Confidence 3566666667666666555544433222221111 577788889999999999 67999999999998
Q ss_pred cC------CCEEEEecCCChhHHHHH---HHHHhcCCeEEEEcccHHHHHHHHHHHHH----cCCCEEEEecCCChhHHH
Q 035988 105 SG------RDVLVIMAAGGGKSLCYQ---LPAVLREGIALVVSPLLSLIQDQVMCLAA----LGIPAHMLTSTTSKEDEK 171 (692)
Q Consensus 105 ~g------~dviv~apTGsGKTl~~~---lpal~~~~~~lvi~Pt~~L~~q~~~~l~~----~gi~~~~~~~~~~~~~~~ 171 (692)
+. .|-++|+.-|.|||.+++ +.|++.++.+.|++||.-|++|.++.|++ +++++..+..-.+..++.
T Consensus 608 ~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~ 687 (1139)
T COG1197 608 RDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQK 687 (1139)
T ss_pred HHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHH
Confidence 53 588999999999999876 55667889999999999999999988875 478888999999999999
Q ss_pred HHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEE
Q 035988 172 FIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMM 251 (692)
Q Consensus 172 ~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i 251 (692)
.+...+..| ..||||+|.--|. +...+.+++++||||-|+ +| +..-..++....++-++
T Consensus 688 ~il~~la~G--~vDIvIGTHrLL~----------kdv~FkdLGLlIIDEEqR---FG------Vk~KEkLK~Lr~~VDvL 746 (1139)
T COG1197 688 EILKGLAEG--KVDIVIGTHRLLS----------KDVKFKDLGLLIIDEEQR---FG------VKHKEKLKELRANVDVL 746 (1139)
T ss_pred HHHHHHhcC--CccEEEechHhhC----------CCcEEecCCeEEEechhh---cC------ccHHHHHHHHhccCcEE
Confidence 999999998 9999999987554 344567999999999999 45 22333677777889999
Q ss_pred EEecccchhhHHHHHHHhcccceEEEec-cCCCCcceEEEeeccCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHH
Q 035988 252 ALTATATQKVQNDLMEMLHIRKCIKFVS-TINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQ 330 (692)
Q Consensus 252 ~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~r~~l~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~ 330 (692)
-|||||-|.+.. +.+.|+++..++.. +.+|-.+...+.+... . .+.+.|......++++...+|.++..+.
T Consensus 747 TLSATPIPRTL~--Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~--~----~ireAI~REl~RgGQvfYv~NrV~~Ie~ 818 (1139)
T COG1197 747 TLSATPIPRTLN--MSLSGIRDLSVIATPPEDRLPVKTFVSEYDD--L----LIREAILRELLRGGQVFYVHNRVESIEK 818 (1139)
T ss_pred EeeCCCCcchHH--HHHhcchhhhhccCCCCCCcceEEEEecCCh--H----HHHHHHHHHHhcCCEEEEEecchhhHHH
Confidence 999999987655 56678877665554 4455555555555433 2 2333333333488999999999999999
Q ss_pred HHHHHHHC--CCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEEeCCCC-CHHHHHHHHhhcC
Q 035988 331 VAQELRQR--GISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSK-SVETYYQESGRAG 407 (692)
Q Consensus 331 l~~~L~~~--g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~~P~-s~~~y~Qr~GRag 407 (692)
+++.|++. ..++.+.||.|+..+-++++..|-+|+.+|||||.+.+.|||+|+++.+|..+.-+ .+.+++|-.||+|
T Consensus 819 ~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVG 898 (1139)
T COG1197 819 KAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVG 898 (1139)
T ss_pred HHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccC
Confidence 99999987 66799999999999999999999999999999999999999999999988776654 7999999999999
Q ss_pred CCCCCCeeEeecCCCCHHHHHHHHhhhhhhhHhHHHHHHHhc
Q 035988 408 RDGLPSECLLFFRPADVPRQSSMVFYENSGLQNLYDIVRYSQ 449 (692)
Q Consensus 408 R~G~~g~~i~l~~~~d~~~~~~l~~~~~~~~~~l~~~~~~~~ 449 (692)
|.++.|.||++|.+...- .....++|+++..+.+
T Consensus 899 RS~~~AYAYfl~p~~k~l--------T~~A~kRL~aI~~~~~ 932 (1139)
T COG1197 899 RSNKQAYAYFLYPPQKAL--------TEDAEKRLEAIASFTE 932 (1139)
T ss_pred CccceEEEEEeecCcccc--------CHHHHHHHHHHHhhhh
Confidence 999999999999876421 1233556666666655
No 76
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=2.7e-31 Score=318.63 Aligned_cols=291 Identities=19% Similarity=0.301 Sum_probs=206.5
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHh----cCCeEEEEcccHHHHHHHHHHHHH
Q 035988 78 RADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVL----REGIALVVSPLLSLIQDQVMCLAA 153 (692)
Q Consensus 78 ~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~----~~~~~lvi~Pt~~L~~q~~~~l~~ 153 (692)
++.+.+.+..|+ .|+|+|+.+++.++.|+|++++||||+|||+ |.+|+.. .+++++||+||++|+.|+++.++.
T Consensus 66 ~f~~~f~~~~g~-~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~ 143 (1171)
T TIGR01054 66 EFEEFFKKAVGS-EPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISS 143 (1171)
T ss_pred HHHHHHHHhcCC-CCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHH
Confidence 344555555666 7999999999999999999999999999997 5555542 367999999999999999999987
Q ss_pred c----CCCEE---EEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccc
Q 035988 154 L----GIPAH---MLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQ 226 (692)
Q Consensus 154 ~----gi~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~ 226 (692)
+ |+... .++|+.+..++...+..+..+ .++|+|+||++|.. .+.... .+++++||||||++++
T Consensus 144 l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~--~~dIlV~Tp~rL~~------~~~~l~--~~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 144 LAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENG--DFDILITTTMFLSK------NYDELG--PKFDFIFVDDVDALLK 213 (1171)
T ss_pred HHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcC--CCCEEEECHHHHHH------HHHHhc--CCCCEEEEeChHhhhh
Confidence 6 44433 467888877766666666655 79999999997753 222221 1799999999999998
Q ss_pred cCC---------CchHH-HHHH-------------------HHHHhhCC-CCC--EEEEeccc-chhhHHHH-HHHhccc
Q 035988 227 WGH---------DFRPD-YKNL-------------------GILKTQFP-DVP--MMALTATA-TQKVQNDL-MEMLHIR 272 (692)
Q Consensus 227 ~g~---------~fr~~-~~~l-------------------~~l~~~~~-~~~--~i~lSAT~-~~~~~~~i-~~~l~~~ 272 (692)
++. .|.++ +..+ ..+....| ..+ ++++|||. +..+...+ ...+++.
T Consensus 214 ~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~ll~~~ 293 (1171)
T TIGR01054 214 ASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFRELLGFE 293 (1171)
T ss_pred ccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHcccccceE
Confidence 542 26654 2221 11111222 334 56789995 44433222 1222111
Q ss_pred ceEEEeccCCCCcceEEEeeccCcchHHHHHHHHHHHHhCCCCCceEEEEecc---chHHHHHHHHHHCCCceeEeccCC
Q 035988 273 KCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSR---KECEQVAQELRQRGISADYYHADM 349 (692)
Q Consensus 273 ~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~---~~~e~l~~~L~~~g~~v~~~h~~~ 349 (692)
+-.......++......... ....+.++++.. +.++||||+|+ +.|+.+++.|+..|+++..+||+|
T Consensus 294 ---v~~~~~~~r~I~~~~~~~~~----~~~~L~~ll~~l---~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~ 363 (1171)
T TIGR01054 294 ---VGGGSDTLRNVVDVYVEDED----LKETLLEIVKKL---GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATK 363 (1171)
T ss_pred ---ecCccccccceEEEEEeccc----HHHHHHHHHHHc---CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCC
Confidence 11111222333322222111 123456666543 46899999999 999999999999999999999999
Q ss_pred CHHHHHHHHHHHhcCCCcEEEe----ccccccccCCCC-ccEEEEeCCCC
Q 035988 350 DINAREKVHMRWSKNKLQVIVG----TVAFGMGINKPD-VRFVIHHSLSK 394 (692)
Q Consensus 350 ~~~eR~~~~~~f~~g~~~ILVa----T~~~~~GIDip~-v~~VI~~~~P~ 394 (692)
+ ..+++.|++|+++|||| |++++||||+|+ |++|||||+|+
T Consensus 364 ~----~~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 364 P----KEDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred C----HHHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 7 36899999999999999 489999999999 89999999997
No 77
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=2.7e-30 Score=282.05 Aligned_cols=323 Identities=20% Similarity=0.290 Sum_probs=258.8
Q ss_pred CCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC------CCEEEEecCCChhHHHHHHHHH---hcCCeEEEEcccHH
Q 035988 72 TFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSG------RDVLVIMAAGGGKSLCYQLPAV---LREGIALVVSPLLS 142 (692)
Q Consensus 72 ~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g------~dviv~apTGsGKTl~~~lpal---~~~~~~lvi~Pt~~ 142 (692)
.++++..+.+.+.+.++| ++|..|++++..|... .+-++++.-|||||+++++.++ ..+..+...+||--
T Consensus 244 ~~~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAPTEI 322 (677)
T COG1200 244 PLPANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPTEI 322 (677)
T ss_pred CCCccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCCeeEEeccHHH
Confidence 456667777777778899 7999999999999864 3469999999999998876554 55789999999999
Q ss_pred HHHHHHHHHHH----cCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEE
Q 035988 143 LIQDQVMCLAA----LGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISI 218 (692)
Q Consensus 143 L~~q~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVI 218 (692)
||+|.+..+.+ +|+++..++|......+..+...+.+| ..+|+|+|.--+. ....+.++.++||
T Consensus 323 LA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G--~~~ivVGTHALiQ----------d~V~F~~LgLVIi 390 (677)
T COG1200 323 LAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASG--EIDIVVGTHALIQ----------DKVEFHNLGLVII 390 (677)
T ss_pred HHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCC--CCCEEEEcchhhh----------cceeecceeEEEE
Confidence 99999988776 499999999999999999999999988 8999999988543 3445679999999
Q ss_pred eCcccccccCCCchHHHHHHHHHHhhCC-CCCEEEEecccchhhHHHHHHHhcccceEEE-eccCCCCcceEEEeeccCc
Q 035988 219 DEAHCCSQWGHDFRPDYKNLGILKTQFP-DVPMMALTATATQKVQNDLMEMLHIRKCIKF-VSTINRPNLFYMVREKSSV 296 (692)
Q Consensus 219 DEaH~l~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~-~~~~~r~~l~~~v~~~~~~ 296 (692)
||=|+ +|-.-|. .|+..-+ ..-++.|||||-|... ....++.-+...+ .-+..|..+...+.....
T Consensus 391 DEQHR---FGV~QR~------~L~~KG~~~Ph~LvMTATPIPRTL--Alt~fgDldvS~IdElP~GRkpI~T~~i~~~~- 458 (677)
T COG1200 391 DEQHR---FGVHQRL------ALREKGEQNPHVLVMTATPIPRTL--ALTAFGDLDVSIIDELPPGRKPITTVVIPHER- 458 (677)
T ss_pred ecccc---ccHHHHH------HHHHhCCCCCcEEEEeCCCchHHH--HHHHhccccchhhccCCCCCCceEEEEecccc-
Confidence 99999 4422222 3444434 4458999999988654 3444554333333 345666666555554432
Q ss_pred chHHHHHHHHHHHHhCCCCCceEEEEeccch--------HHHHHHHHHHC--CCceeEeccCCCHHHHHHHHHHHhcCCC
Q 035988 297 GKVVIDEIAKYIQESYPNSESGIVYCFSRKE--------CEQVAQELRQR--GISADYYHADMDINAREKVHMRWSKNKL 366 (692)
Q Consensus 297 ~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~--------~e~l~~~L~~~--g~~v~~~h~~~~~~eR~~~~~~f~~g~~ 366 (692)
...+.+++......+.++.|.|+-+++ ++.+++.|+.. ++.+..+||.|+++++++++++|++|++
T Consensus 459 ----~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~ 534 (677)
T COG1200 459 ----RPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEI 534 (677)
T ss_pred ----HHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCC
Confidence 455666666666689999999998765 45677777754 6679999999999999999999999999
Q ss_pred cEEEeccccccccCCCCccEEEEeCCCC-CHHHHHHHHhhcCCCCCCCeeEeecCCCC
Q 035988 367 QVIVGTVAFGMGINKPDVRFVIHHSLSK-SVETYYQESGRAGRDGLPSECLLFFRPAD 423 (692)
Q Consensus 367 ~ILVaT~~~~~GIDip~v~~VI~~~~P~-s~~~y~Qr~GRagR~G~~g~~i~l~~~~d 423 (692)
+|||||.+++.|||+||.+++|..+.-. .+.++-|-.||+||.+.++.|+++|.+..
T Consensus 535 ~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 535 DILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred cEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 9999999999999999999988887654 79999999999999999999999998865
No 78
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.98 E-value=4.6e-31 Score=293.84 Aligned_cols=304 Identities=19% Similarity=0.282 Sum_probs=222.8
Q ss_pred EEEecCCChhHHHHHHHH---HhcCCeEEEEcccHHHHHHHHHHHHH-cCCCEEEEecCCChhHHHHHHHHHHhcCCCcc
Q 035988 110 LVIMAAGGGKSLCYQLPA---VLREGIALVVSPLLSLIQDQVMCLAA-LGIPAHMLTSTTSKEDEKFIYKALEKGEGELK 185 (692)
Q Consensus 110 iv~apTGsGKTl~~~lpa---l~~~~~~lvi~Pt~~L~~q~~~~l~~-~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 185 (692)
++.||||||||.+|+..+ +..++.+||++|+++|+.|+++.+++ +|.++..++|+.+..++...+..+..+ ..+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g--~~~ 78 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNG--EIL 78 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcC--CCC
Confidence 478999999999986433 34577999999999999999999986 588999999999988888888888766 789
Q ss_pred EEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHH--HHHHHHHhhCCCCCEEEEecccchhhHH
Q 035988 186 MLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDY--KNLGILKTQFPDVPMMALTATATQKVQN 263 (692)
Q Consensus 186 Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~--~~l~~l~~~~~~~~~i~lSAT~~~~~~~ 263 (692)
|+|+|+..+.. .+.++++|||||+|..+.++.++ +.| +.+..++....+.+++++|||++.+...
T Consensus 79 IVVGTrsalf~------------p~~~l~lIIVDEeh~~sykq~~~-p~y~ar~~a~~ra~~~~~~vil~SATPsles~~ 145 (505)
T TIGR00595 79 VVIGTRSALFL------------PFKNLGLIIVDEEHDSSYKQEEG-PRYHARDVAVYRAKKFNCPVVLGSATPSLESYH 145 (505)
T ss_pred EEECChHHHcC------------cccCCCEEEEECCCccccccccC-CCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHH
Confidence 99999986632 24689999999999988776544 333 5566777888899999999998876554
Q ss_pred HHHHHhcccceEEEeccC---CCCcceEEEeeccCcchHHHHHHHHHHHHhCCCCCceEEEEeccch-------------
Q 035988 264 DLMEMLHIRKCIKFVSTI---NRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKE------------- 327 (692)
Q Consensus 264 ~i~~~l~~~~~~~~~~~~---~r~~l~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~------------- 327 (692)
.+.. +..........+ ..|.+.................+.+.+.+....++++|||+|++..
T Consensus 146 ~~~~--g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~~ 223 (505)
T TIGR00595 146 NAKQ--KAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYIL 223 (505)
T ss_pred HHhc--CCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCcc
Confidence 4422 111111111111 1122222111111111122345666666666588999999887643
Q ss_pred -----------------------------------------------HHHHHHHHHHC--CCceeEeccCCCHHHH--HH
Q 035988 328 -----------------------------------------------CEQVAQELRQR--GISADYYHADMDINAR--EK 356 (692)
Q Consensus 328 -----------------------------------------------~e~l~~~L~~~--g~~v~~~h~~~~~~eR--~~ 356 (692)
++.+.+.|++. +.++..+|++++...+ +.
T Consensus 224 ~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~ 303 (505)
T TIGR00595 224 CCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHEA 303 (505)
T ss_pred CCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHHH
Confidence 47888888877 7889999999987665 89
Q ss_pred HHHHHhcCCCcEEEeccccccccCCCCccEEE--EeCC----CC------CHHHHHHHHhhcCCCCCCCeeEeecCCCCH
Q 035988 357 VHMRWSKNKLQVIVGTVAFGMGINKPDVRFVI--HHSL----SK------SVETYYQESGRAGRDGLPSECLLFFRPADV 424 (692)
Q Consensus 357 ~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI--~~~~----P~------s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~ 424 (692)
+++.|++|+.+|||+|++++.|+|+|+|++|+ ++|. |. ....|.|++||+||.+..|.+++.....+-
T Consensus 304 ~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~~ 383 (505)
T TIGR00595 304 LLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPNH 383 (505)
T ss_pred HHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCCC
Confidence 99999999999999999999999999999875 5553 32 357899999999999999999865443343
Q ss_pred HHHHHH
Q 035988 425 PRQSSM 430 (692)
Q Consensus 425 ~~~~~l 430 (692)
+.+..+
T Consensus 384 ~~~~~~ 389 (505)
T TIGR00595 384 PAIQAA 389 (505)
T ss_pred HHHHHH
Confidence 443443
No 79
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.98 E-value=6.1e-31 Score=291.20 Aligned_cols=318 Identities=21% Similarity=0.345 Sum_probs=219.3
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc-----CCeEEEEcccHHHHHHHHHHHHHcCCCE--EE-
Q 035988 89 IPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR-----EGIALVVSPLLSLIQDQVMCLAALGIPA--HM- 160 (692)
Q Consensus 89 ~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~-----~~~~lvi~Pt~~L~~q~~~~l~~~gi~~--~~- 160 (692)
.-.+|.||.+++..+| |+++|+++|||+|||+++...++.+ .+++++++|++-|+.||...+..+|++. ..
T Consensus 60 ~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~~~~T~~ 138 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYLIPYSVTGQ 138 (746)
T ss_pred cccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhccCcccceee
Confidence 3479999999999999 9999999999999999988777643 5899999999999999998888887652 22
Q ss_pred EecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHH
Q 035988 161 LTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGI 240 (692)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~ 240 (692)
+.+......+..++. ..+|+|+||+.+.+. +.+.... .++.+.++||||||+-.. .+.|...++.+..
T Consensus 139 l~~~~~~~~r~~i~~-------s~~vff~TpQil~nd--L~~~~~~--~ls~fs~iv~DE~Hra~k-n~~Y~~Vmr~~l~ 206 (746)
T KOG0354|consen 139 LGDTVPRSNRGEIVA-------SKRVFFRTPQILEND--LKSGLHD--ELSDFSLIVFDECHRTSK-NHPYNNIMREYLD 206 (746)
T ss_pred ccCccCCCchhhhhc-------ccceEEeChHhhhhh--ccccccc--ccceEEEEEEcccccccc-cccHHHHHHHHHH
Confidence 333344444444443 689999999988652 2222222 257899999999999753 2335555444333
Q ss_pred HHhhCCCCCEEEEecccchhhHH---HHHH-----------------------------------------------Hh-
Q 035988 241 LKTQFPDVPMMALTATATQKVQN---DLME-----------------------------------------------ML- 269 (692)
Q Consensus 241 l~~~~~~~~~i~lSAT~~~~~~~---~i~~-----------------------------------------------~l- 269 (692)
+... +.++++||||+...... .+.. ++
T Consensus 207 ~k~~--~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~ 284 (746)
T KOG0354|consen 207 LKNQ--GNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQ 284 (746)
T ss_pred hhhc--cccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHH
Confidence 3333 33899999999532211 1100 00
Q ss_pred -----cccceEEEeccCCC----------C----cce------------------EEEe---------------------
Q 035988 270 -----HIRKCIKFVSTINR----------P----NLF------------------YMVR--------------------- 291 (692)
Q Consensus 270 -----~~~~~~~~~~~~~r----------~----~l~------------------~~v~--------------------- 291 (692)
++.........+.. + +.. ..+.
T Consensus 285 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~ 364 (746)
T KOG0354|consen 285 QLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYL 364 (746)
T ss_pred HHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHH
Confidence 00000000000000 0 000 0000
Q ss_pred -----------------------eccCcchHHHHHHHHHHHHhC--CCCCceEEEEeccchHHHHHHHHHH---CCCcee
Q 035988 292 -----------------------EKSSVGKVVIDEIAKYIQESY--PNSESGIVYCFSRKECEQVAQELRQ---RGISAD 343 (692)
Q Consensus 292 -----------------------~~~~~~~~~~~~l~~~l~~~~--~~~~~~IIf~~s~~~~e~l~~~L~~---~g~~v~ 343 (692)
........++..+.+++.+.+ .+..++||||.+|+.|..|..+|.+ .|++..
T Consensus 365 ~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~ 444 (746)
T KOG0354|consen 365 KLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAE 444 (746)
T ss_pred HHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccc
Confidence 000011223444444444433 3677999999999999999999983 244444
Q ss_pred Eec--------cCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCee
Q 035988 344 YYH--------ADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSEC 415 (692)
Q Consensus 344 ~~h--------~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~ 415 (692)
++- .+|++.++.++++.|++|+++|||||+++++|+|++.|+.||-||...|+...+||.|| ||. +.|.|
T Consensus 445 ~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~ 522 (746)
T KOG0354|consen 445 IFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKC 522 (746)
T ss_pred eeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeE
Confidence 443 47999999999999999999999999999999999999999999999999999999999 998 57999
Q ss_pred EeecCCCC
Q 035988 416 LLFFRPAD 423 (692)
Q Consensus 416 i~l~~~~d 423 (692)
+++++...
T Consensus 523 vll~t~~~ 530 (746)
T KOG0354|consen 523 VLLTTGSE 530 (746)
T ss_pred EEEEcchh
Confidence 99998443
No 80
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.97 E-value=1.3e-30 Score=307.74 Aligned_cols=301 Identities=17% Similarity=0.219 Sum_probs=208.7
Q ss_pred HHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc----C--CeEEEEcc----cHHHHHHHHHHHHH-cCCCEEEEecC
Q 035988 96 QQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR----E--GIALVVSP----LLSLIQDQVMCLAA-LGIPAHMLTST 164 (692)
Q Consensus 96 Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~----~--~~~lvi~P----t~~L~~q~~~~l~~-~gi~~~~~~~~ 164 (692)
-.++++++..++.++++|+||||||. ++|.++. + +.+++.-| +++|+.++.+++.. +|-.+.+-...
T Consensus 79 r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~vrf 156 (1294)
T PRK11131 79 KQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYKVRF 156 (1294)
T ss_pred HHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceeceeecC
Confidence 34566677777888999999999999 7896543 1 23444457 46888888888774 45444332211
Q ss_pred CChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCccc-ccccCCCchHHHHHHHHHHh
Q 035988 165 TSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHC-CSQWGHDFRPDYKNLGILKT 243 (692)
Q Consensus 165 ~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~-l~~~g~~fr~~~~~l~~l~~ 243 (692)
... . ...++|+|+||++|.. .+.....+.++++|||||||. ..+.+ |...+ +..+..
T Consensus 157 ~~~---------~---s~~t~I~v~TpG~LL~------~l~~d~~Ls~~~~IIIDEAHERsLn~D--fLLg~--Lk~lL~ 214 (1294)
T PRK11131 157 NDQ---------V---SDNTMVKLMTDGILLA------EIQQDRLLMQYDTIIIDEAHERSLNID--FILGY--LKELLP 214 (1294)
T ss_pred ccc---------c---CCCCCEEEEChHHHHH------HHhcCCccccCcEEEecCccccccccc--hHHHH--HHHhhh
Confidence 100 0 1268999999997753 333334578999999999995 55544 66543 334555
Q ss_pred hCCCCCEEEEecccchhhHHHHHHHhcccceEEEeccCCCCcceEEEeeccCc--chHHHHHHHHHHHHh-CCCCCceEE
Q 035988 244 QFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSV--GKVVIDEIAKYIQES-YPNSESGIV 320 (692)
Q Consensus 244 ~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~~~--~~~~~~~l~~~l~~~-~~~~~~~II 320 (692)
..|+.++|+||||++.. .+.++++....+.+..........|........ ..+.+..+...+... ....+.+||
T Consensus 215 ~rpdlKvILmSATid~e---~fs~~F~~apvI~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILV 291 (1294)
T PRK11131 215 RRPDLKVIITSATIDPE---RFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILI 291 (1294)
T ss_pred cCCCceEEEeeCCCCHH---HHHHHcCCCCEEEEcCccccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 56788999999999753 455555433323222222222233322211110 123344444443321 125678999
Q ss_pred EEeccchHHHHHHHHHHCCCc---eeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEEeCC-----
Q 035988 321 YCFSRKECEQVAQELRQRGIS---ADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSL----- 392 (692)
Q Consensus 321 f~~s~~~~e~l~~~L~~~g~~---v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~~----- 392 (692)
||++..+++.+++.|...+++ +..+||+|+.++|..+++. .|..+|||||+++++|||+|+|++||++|+
T Consensus 292 FLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~ 369 (1294)
T PRK11131 292 FMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISR 369 (1294)
T ss_pred EcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccc
Confidence 999999999999999988765 6789999999999999886 578899999999999999999999999873
Q ss_pred ----------C---CCHHHHHHHHhhcCCCCCCCeeEeecCCCCHHH
Q 035988 393 ----------S---KSVETYYQESGRAGRDGLPSECLLFFRPADVPR 426 (692)
Q Consensus 393 ----------P---~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~ 426 (692)
| -|.++|.||+|||||. .+|.||.+|+..++..
T Consensus 370 Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~~ 415 (1294)
T PRK11131 370 YSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFLS 415 (1294)
T ss_pred cccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHHh
Confidence 3 4668999999999999 6999999999877654
No 81
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=4.5e-30 Score=290.04 Aligned_cols=305 Identities=17% Similarity=0.150 Sum_probs=208.1
Q ss_pred CCCHHHHHHHHHHHc-C--CCEEEEecCCChhHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHc-CC---CEEEEec
Q 035988 91 AYRANQQEIINAVLS-G--RDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMCLAAL-GI---PAHMLTS 163 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~-g--~dviv~apTGsGKTl~~~lpal~~~~~~lvi~Pt~~L~~q~~~~l~~~-gi---~~~~~~~ 163 (692)
.+||||.+++..++. | +..++++|||+|||++.+..+.....++|||||+..|+.||.+.+.++ ++ .+..++|
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I~~~tg 334 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTVKKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQICRFTS 334 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHhCCCEEEEeCcHHHHHHHHHHHHHhcCCCCceEEEEec
Confidence 689999999999884 3 468999999999999987655555688999999999999999999986 22 3344444
Q ss_pred CCChhHHHHHHHHHHhcCCCccEEEeChhhhhchH----HHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHH
Q 035988 164 TTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSK----RFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLG 239 (692)
Q Consensus 164 ~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~----~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~ 239 (692)
+.... . .+...|+|+|+.++.... .+...+. .+....++++|+||||++.. +.+++
T Consensus 335 ~~k~~----~-------~~~~~VvVtTYq~l~~~~~r~~~~~~~l~-~l~~~~~gLII~DEvH~lpA------~~fr~-- 394 (732)
T TIGR00603 335 DAKER----F-------HGEAGVVVSTYSMVAHTGKRSYESEKVME-WLTNREWGLILLDEVHVVPA------AMFRR-- 394 (732)
T ss_pred Ccccc----c-------ccCCcEEEEEHHHhhcccccchhhhHHHH-HhccccCCEEEEEccccccH------HHHHH--
Confidence 32110 0 114789999999885321 1111111 11224789999999999742 22332
Q ss_pred HHHhhCCCCCEEEEecccchhhH--HHHHHHhcccceEEEec--------cCCCCcceEEEeecc---------------
Q 035988 240 ILKTQFPDVPMMALTATATQKVQ--NDLMEMLHIRKCIKFVS--------TINRPNLFYMVREKS--------------- 294 (692)
Q Consensus 240 ~l~~~~~~~~~i~lSAT~~~~~~--~~i~~~l~~~~~~~~~~--------~~~r~~l~~~v~~~~--------------- 294 (692)
+...++....++||||+..... .++...+| +..+.. .+-.+...+.+....
T Consensus 395 -il~~l~a~~RLGLTATP~ReD~~~~~L~~LiG---P~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~ 470 (732)
T TIGR00603 395 -VLTIVQAHCKLGLTATLVREDDKITDLNFLIG---PKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRK 470 (732)
T ss_pred -HHHhcCcCcEEEEeecCcccCCchhhhhhhcC---CeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchh
Confidence 2233344568999999964321 22222222 111111 111110011111000
Q ss_pred -----CcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcC-CCcE
Q 035988 295 -----SVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKN-KLQV 368 (692)
Q Consensus 295 -----~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g-~~~I 368 (692)
.....++..+..++..+...+.++||||.+...++.++..| + +..+||+++..+|..+++.|+.| .+++
T Consensus 471 k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L---~--~~~I~G~ts~~ER~~il~~Fr~~~~i~v 545 (732)
T TIGR00603 471 RMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL---G--KPFIYGPTSQQERMQILQNFQHNPKVNT 545 (732)
T ss_pred hhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc---C--CceEECCCCHHHHHHHHHHHHhCCCccE
Confidence 00112334444444433237889999999999999998887 2 56789999999999999999975 7899
Q ss_pred EEeccccccccCCCCccEEEEeCCC-CCHHHHHHHHhhcCCCCCCCee-------EeecCCCCH
Q 035988 369 IVGTVAFGMGINKPDVRFVIHHSLS-KSVETYYQESGRAGRDGLPSEC-------LLFFRPADV 424 (692)
Q Consensus 369 LVaT~~~~~GIDip~v~~VI~~~~P-~s~~~y~Qr~GRagR~G~~g~~-------i~l~~~~d~ 424 (692)
||+|.++++|||+|++++||+++.| .|...|+||+||++|.+..|.+ |.|++.+..
T Consensus 546 Lv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~ 609 (732)
T TIGR00603 546 IFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQ 609 (732)
T ss_pred EEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCch
Confidence 9999999999999999999999998 5999999999999999876654 777776653
No 82
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=8.2e-30 Score=284.46 Aligned_cols=334 Identities=21% Similarity=0.279 Sum_probs=247.3
Q ss_pred HHhcCCCCCCHHHHHHHHHHHc-CCCEEEEecCCChhHHHHHHHHHhc-------------CCeEEEEcccHHHHHHHHH
Q 035988 84 LNVFGIPAYRANQQEIINAVLS-GRDVLVIMAAGGGKSLCYQLPAVLR-------------EGIALVVSPLLSLIQDQVM 149 (692)
Q Consensus 84 ~~~fg~~~~r~~Q~~ai~~il~-g~dviv~apTGsGKTl~~~lpal~~-------------~~~~lvi~Pt~~L~~q~~~ 149 (692)
+..|+|..|..+|+.++|.+.. +.+.|++||||+|||..|+|.++.. +-++++|+|+++|+.++++
T Consensus 103 k~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~ 182 (1230)
T KOG0952|consen 103 KGFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVD 182 (1230)
T ss_pred hhcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHH
Confidence 3579999999999999999875 6799999999999999999877632 3589999999999999998
Q ss_pred HHHH----cCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCccccc
Q 035988 150 CLAA----LGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCS 225 (692)
Q Consensus 150 ~l~~----~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~ 225 (692)
.+.+ +|+.+..++|+......+ +. .++|+|+|||++--..|... .....+..+.++||||+|.+-
T Consensus 183 ~~~kkl~~~gi~v~ELTGD~ql~~te-i~--------~tqiiVTTPEKwDvvTRk~~--~d~~l~~~V~LviIDEVHlLh 251 (1230)
T KOG0952|consen 183 KFSKKLAPLGISVRELTGDTQLTKTE-IA--------DTQIIVTTPEKWDVVTRKSV--GDSALFSLVRLVIIDEVHLLH 251 (1230)
T ss_pred HHhhhcccccceEEEecCcchhhHHH-HH--------hcCEEEecccceeeeeeeec--cchhhhhheeeEEeeeehhhc
Confidence 8765 389999999998665433 21 68999999998743212111 012234578999999999985
Q ss_pred c-cCCCchHHHHHHHHHH-hhCCCCCEEEEecccchhhHHHHHHHhcccc--eEE-EeccCCCCcceEEEeeccCc----
Q 035988 226 Q-WGHDFRPDYKNLGILK-TQFPDVPMMALTATATQKVQNDLMEMLHIRK--CIK-FVSTINRPNLFYMVREKSSV---- 296 (692)
Q Consensus 226 ~-~g~~fr~~~~~l~~l~-~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~--~~~-~~~~~~r~~l~~~v~~~~~~---- 296 (692)
+ .|......+.++..+. .....++++++|||+|. ..++.++|+.+. .+. |...+..-.+...+.....+
T Consensus 252 d~RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN--~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~ 329 (1230)
T KOG0952|consen 252 DDRGPVLETIVARTLRLVESSQSMIRIVGLSATLPN--YEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQ 329 (1230)
T ss_pred CcccchHHHHHHHHHHHHHhhhhheEEEEeeccCCC--HHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchh
Confidence 3 5544444444433332 23457889999999997 688999999852 233 33333333333322222111
Q ss_pred -----chHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHC----C-------------------CceeEeccC
Q 035988 297 -----GKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQR----G-------------------ISADYYHAD 348 (692)
Q Consensus 297 -----~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~----g-------------------~~v~~~h~~ 348 (692)
.+...+.+.+++. .+.+++|||.+++.+...|+.|.+. | ....++|+|
T Consensus 330 ~~~~~d~~~~~kv~e~~~----~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAG 405 (1230)
T KOG0952|consen 330 QKKNIDEVCYDKVVEFLQ----EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAG 405 (1230)
T ss_pred hhhhHHHHHHHHHHHHHH----cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccc
Confidence 1223455566655 7899999999999999999988653 1 135689999
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEE----EeCCCC------CHHHHHHHHhhcCCCC--CCCeeE
Q 035988 349 MDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVI----HHSLSK------SVETYYQESGRAGRDG--LPSECL 416 (692)
Q Consensus 349 ~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI----~~~~P~------s~~~y~Qr~GRagR~G--~~g~~i 416 (692)
|...+|..+.+.|..|.++||+||..++.|+|+|+--++| .||..+ ++-+.+|..|||||.. ..|.++
T Consensus 406 m~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~gi 485 (1230)
T KOG0952|consen 406 MLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGI 485 (1230)
T ss_pred cchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEE
Confidence 9999999999999999999999999999999999766655 233333 6778999999999975 448888
Q ss_pred eecCCCCHHHHHHHHhhh
Q 035988 417 LFFRPADVPRQSSMVFYE 434 (692)
Q Consensus 417 ~l~~~~d~~~~~~l~~~~ 434 (692)
++-+.+-+.....++...
T Consensus 486 IiTt~dkl~~Y~sLl~~~ 503 (1230)
T KOG0952|consen 486 IITTRDKLDHYESLLTGQ 503 (1230)
T ss_pred EEecccHHHHHHHHHcCC
Confidence 888887788888887654
No 83
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.97 E-value=2.4e-28 Score=285.24 Aligned_cols=318 Identities=18% Similarity=0.186 Sum_probs=216.7
Q ss_pred CCCHHHHHHHHHHHcC--CCEEEEecCCChhHHHHHHHHH---hcC--CeEEEEcccHHHHHHHHHHH-HHcCCCEEEEe
Q 035988 91 AYRANQQEIINAVLSG--RDVLVIMAAGGGKSLCYQLPAV---LRE--GIALVVSPLLSLIQDQVMCL-AALGIPAHMLT 162 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~g--~dviv~apTGsGKTl~~~lpal---~~~--~~~lvi~Pt~~L~~q~~~~l-~~~gi~~~~~~ 162 (692)
.+.|+|..++..++.. ..+|+...+|.|||+-+.+.+- ..+ .++|||||. +|..||..++ +++++...++.
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~-sL~~QW~~El~~kF~l~~~i~~ 230 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPE-TLQHQWLVEMLRRFNLRFSLFD 230 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCH-HHHHHHHHHHHHHhCCCeEEEc
Confidence 5889999998887654 4689999999999987654331 223 589999998 8999998888 46888877776
Q ss_pred cCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHHHH
Q 035988 163 STTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILK 242 (692)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~ 242 (692)
+....... ..-.......+++|+|.+.+.......+.+.. ..++++||||||++......-...|..+..+.
T Consensus 231 ~~~~~~~~----~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~----~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La 302 (956)
T PRK04914 231 EERYAEAQ----HDADNPFETEQLVICSLDFLRRNKQRLEQALA----AEWDLLVVDEAHHLVWSEEAPSREYQVVEQLA 302 (956)
T ss_pred Ccchhhhc----ccccCccccCcEEEEEHHHhhhCHHHHHHHhh----cCCCEEEEechhhhccCCCCcCHHHHHHHHHh
Confidence 54322100 00001111468999999988753333333322 47999999999998621111223466555555
Q ss_pred hhCCCCCEEEEecccchhhHHHHHHHhcccc-------------------------------------------------
Q 035988 243 TQFPDVPMMALTATATQKVQNDLMEMLHIRK------------------------------------------------- 273 (692)
Q Consensus 243 ~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~------------------------------------------------- 273 (692)
...+ .+++|||||-..-..++...|.+-+
T Consensus 303 ~~~~--~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~ 380 (956)
T PRK04914 303 EVIP--GVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQD 380 (956)
T ss_pred hccC--CEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccc
Confidence 4433 4789999984311111111110000
Q ss_pred ---------------------------------eEEEeccC----CCCcceEEEeec-----------------------
Q 035988 274 ---------------------------------CIKFVSTI----NRPNLFYMVREK----------------------- 293 (692)
Q Consensus 274 ---------------------------------~~~~~~~~----~r~~l~~~v~~~----------------------- 293 (692)
.+.+...- .-|.-.+.....
T Consensus 381 ~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~ 460 (956)
T PRK04914 381 IEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLY 460 (956)
T ss_pred hhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcC
Confidence 01111000 000000011000
Q ss_pred -------------cCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHH-HCCCceeEeccCCCHHHHHHHHH
Q 035988 294 -------------SSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELR-QRGISADYYHADMDINAREKVHM 359 (692)
Q Consensus 294 -------------~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~-~~g~~v~~~h~~~~~~eR~~~~~ 359 (692)
......+++.|.++++.. .++++||||+++..+..+++.|+ ..|+++..+||+|+..+|..+++
T Consensus 461 pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~--~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~ 538 (956)
T PRK04914 461 PEQIYQEFEDNATWWNFDPRVEWLIDFLKSH--RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAA 538 (956)
T ss_pred HHHHHHHHhhhhhccccCHHHHHHHHHHHhc--CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHH
Confidence 001112445667777654 57899999999999999999995 56999999999999999999999
Q ss_pred HHhcC--CCcEEEeccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCC
Q 035988 360 RWSKN--KLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRP 421 (692)
Q Consensus 360 ~f~~g--~~~ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~ 421 (692)
.|+++ ..+|||||+++++|+|++.+++||+||+|+++..|.||+||+||.|+.+.+.+++..
T Consensus 539 ~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~ 602 (956)
T PRK04914 539 YFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPY 602 (956)
T ss_pred HHhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEcc
Confidence 99984 599999999999999999999999999999999999999999999999877666543
No 84
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.96 E-value=2e-28 Score=290.30 Aligned_cols=303 Identities=18% Similarity=0.250 Sum_probs=209.3
Q ss_pred HHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc------CCeEEEEcccHHHHHHHHHHHHH-cCCCEEEEecCC-Chh
Q 035988 97 QEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR------EGIALVVSPLLSLIQDQVMCLAA-LGIPAHMLTSTT-SKE 168 (692)
Q Consensus 97 ~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~------~~~~lvi~Pt~~L~~q~~~~l~~-~gi~~~~~~~~~-~~~ 168 (692)
.+++.++..++.++++|+||||||. ++|.++. .+.+++.-|.|--+.....++.+ +|.++....|.. ..+
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~vR~~ 150 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTT--QLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKVRFH 150 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeEEcCC
Confidence 3456666677889999999999999 7887653 13556667888877777766553 566655444421 111
Q ss_pred HHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCccc-ccccCCCchHHHHHHHHHHhhCCC
Q 035988 169 DEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHC-CSQWGHDFRPDYKNLGILKTQFPD 247 (692)
Q Consensus 169 ~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~-l~~~g~~fr~~~~~l~~l~~~~~~ 247 (692)
.. . .....|.|+|++.|.. .+.....+.++++|||||||. ..+.+ |...+. ..+....|+
T Consensus 151 ~~-------~--s~~T~I~~~TdGiLLr------~l~~d~~L~~~~~IIIDEaHERsL~~D--~LL~lL--k~il~~rpd 211 (1283)
T TIGR01967 151 DQ-------V--SSNTLVKLMTDGILLA------ETQQDRFLSRYDTIIIDEAHERSLNID--FLLGYL--KQLLPRRPD 211 (1283)
T ss_pred cc-------c--CCCceeeeccccHHHH------HhhhCcccccCcEEEEcCcchhhccch--hHHHHH--HHHHhhCCC
Confidence 10 0 1267999999997752 233334578999999999994 55433 554432 245556688
Q ss_pred CCEEEEecccchhhHHHHHHHhcccceEEEeccCCCCcceEEEeeccCc--chHHHHHHHHHHHHhC-CCCCceEEEEec
Q 035988 248 VPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSV--GKVVIDEIAKYIQESY-PNSESGIVYCFS 324 (692)
Q Consensus 248 ~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~~~--~~~~~~~l~~~l~~~~-~~~~~~IIf~~s 324 (692)
.++|+||||++. ..+.++++..+.+.+........+.|........ .....+.+...+.... ...+.+|||+++
T Consensus 212 LKlIlmSATld~---~~fa~~F~~apvI~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg 288 (1283)
T TIGR01967 212 LKIIITSATIDP---ERFSRHFNNAPIIEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPG 288 (1283)
T ss_pred CeEEEEeCCcCH---HHHHHHhcCCCEEEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCC
Confidence 999999999975 3566666543333222222222233322211110 1123334444443221 145789999999
Q ss_pred cchHHHHHHHHHHCC---CceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEEeCCCC-------
Q 035988 325 RKECEQVAQELRQRG---ISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSK------- 394 (692)
Q Consensus 325 ~~~~e~l~~~L~~~g---~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~~P~------- 394 (692)
..+++.+++.|...+ +.+..+||+|+.++|..+++.+ +..+|||||+++++|||+|+|++||++|+++
T Consensus 289 ~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~ 366 (1283)
T TIGR01967 289 EREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYR 366 (1283)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccc
Confidence 999999999999864 4588999999999999986543 3468999999999999999999999999653
Q ss_pred -----------CHHHHHHHHhhcCCCCCCCeeEeecCCCCHHH
Q 035988 395 -----------SVETYYQESGRAGRDGLPSECLLFFRPADVPR 426 (692)
Q Consensus 395 -----------s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~ 426 (692)
|.++|.||+|||||.| +|.||.+|+..+...
T Consensus 367 ~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 367 TKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFNS 408 (1283)
T ss_pred cCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHHh
Confidence 6789999999999998 999999999877654
No 85
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.96 E-value=4.6e-28 Score=266.71 Aligned_cols=288 Identities=16% Similarity=0.249 Sum_probs=205.7
Q ss_pred CCCHHHHHHHHHHHc----CCCEEEEecCCChhHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHcCCC---EEEEec
Q 035988 91 AYRANQQEIINAVLS----GRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMCLAALGIP---AHMLTS 163 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~----g~dviv~apTGsGKTl~~~lpal~~~~~~lvi~Pt~~L~~q~~~~l~~~gi~---~~~~~~ 163 (692)
.+|++|.+++.++.. ++..++++|||+|||++++..+-.....+|||+|+.+|+.|+.+.+...... ...+.+
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~~~Lvlv~~~~L~~Qw~~~~~~~~~~~~~~g~~~~ 115 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKRSTLVLVPTKELLDQWAEALKKFLLLNDEIGIYGG 115 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcCCEEEEECcHHHHHHHHHHHHHhcCCccccceecC
Confidence 799999999999998 8999999999999999988766666677999999999999998877765332 333433
Q ss_pred CCChhHHHHHHHHHHhcCCC-ccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHHHH
Q 035988 164 TTSKEDEKFIYKALEKGEGE-LKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILK 242 (692)
Q Consensus 164 ~~~~~~~~~~~~~l~~~~~~-~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~ 242 (692)
+.... . ..|+|+|.+++.... .+ .....+.+++||+||||+++.- .++.+ .
T Consensus 116 ~~~~~--------------~~~~i~vat~qtl~~~~----~l-~~~~~~~~~liI~DE~Hh~~a~------~~~~~---~ 167 (442)
T COG1061 116 GEKEL--------------EPAKVTVATVQTLARRQ----LL-DEFLGNEFGLIIFDEVHHLPAP------SYRRI---L 167 (442)
T ss_pred ceecc--------------CCCcEEEEEhHHHhhhh----hh-hhhcccccCEEEEEccccCCcH------HHHHH---H
Confidence 32211 2 369999999886421 11 1122247999999999997642 23332 2
Q ss_pred hhCCCCC-EEEEecccchhhHHHHHHHhcccceEEEec--------cCCCCcceEEEeeccC------------------
Q 035988 243 TQFPDVP-MMALTATATQKVQNDLMEMLHIRKCIKFVS--------TINRPNLFYMVREKSS------------------ 295 (692)
Q Consensus 243 ~~~~~~~-~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~--------~~~r~~l~~~v~~~~~------------------ 295 (692)
..+.... +++||||+.......+........+.++.. .+-.|..++.+.....
T Consensus 168 ~~~~~~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~ 247 (442)
T COG1061 168 ELLSAAYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELL 247 (442)
T ss_pred HhhhcccceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhh
Confidence 2222222 899999987543222222222221222211 1222222222221100
Q ss_pred -----------------cchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHH
Q 035988 296 -----------------VGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVH 358 (692)
Q Consensus 296 -----------------~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~ 358 (692)
........+...+..+. .+.+++|||.+..++..++..|...|+ +..+.|..+..+|..++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il 325 (442)
T COG1061 248 RARGTLRAENEARRIAIASERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAIL 325 (442)
T ss_pred hhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHH
Confidence 00111222333333332 578999999999999999999998888 89999999999999999
Q ss_pred HHHhcCCCcEEEeccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCC
Q 035988 359 MRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGR 408 (692)
Q Consensus 359 ~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR 408 (692)
+.|+.|.+++||++.++.+|+|+|+++++|......|...|+||+||.-|
T Consensus 326 ~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 326 ERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred HHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 99999999999999999999999999999999999999999999999999
No 86
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=4.5e-27 Score=266.31 Aligned_cols=327 Identities=18% Similarity=0.194 Sum_probs=231.0
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHh---cCCeEEEEcccHHHHHHHHHHHHH--
Q 035988 79 ADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVL---REGIALVVSPLLSLIQDQVMCLAA-- 153 (692)
Q Consensus 79 ~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~---~~~~~lvi~Pt~~L~~q~~~~l~~-- 153 (692)
+.++.++.+|+ .|++.|.-.-=++..|+ |+.|.||+|||++..+|++. .+..+-|++|+--||.+-++.+..
T Consensus 69 vrEa~~R~~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G~~v~vvT~neyLA~Rd~e~~~~~~ 145 (796)
T PRK12906 69 AREGAKRVLGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGELY 145 (796)
T ss_pred HHHHHHHHhCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcCCCeEEEeccHHHHHhhHHHHHHHH
Confidence 44555666787 56677766544444454 99999999999999999875 477899999999999998887765
Q ss_pred --cCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHH---hhhhcCCceEEEEeCcccccc--
Q 035988 154 --LGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLE---KCHHAGRLSLISIDEAHCCSQ-- 226 (692)
Q Consensus 154 --~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~---~~~~~~~l~~iVIDEaH~l~~-- 226 (692)
+|+++.++.++.+..++...+ .++|+|+|...+.- ..+.+.+. .......+.+.||||+|.++=
T Consensus 146 ~~LGl~vg~i~~~~~~~~r~~~y--------~~dI~Y~t~~e~gf-DyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDe 216 (796)
T PRK12906 146 RWLGLTVGLNLNSMSPDEKRAAY--------NCDITYSTNSELGF-DYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDE 216 (796)
T ss_pred HhcCCeEEEeCCCCCHHHHHHHh--------cCCCeecCCccccc-cchhhccccchhhhhccCcceeeeccchheeecc
Confidence 599999999988877665544 68999999987752 12223221 122345688999999998641
Q ss_pred ---------cCCCchHHHHHHHHHHhhCC--------------------CCCEEE-------------------------
Q 035988 227 ---------WGHDFRPDYKNLGILKTQFP--------------------DVPMMA------------------------- 252 (692)
Q Consensus 227 ---------~g~~fr~~~~~l~~l~~~~~--------------------~~~~i~------------------------- 252 (692)
........|..+..+...+. ....+.
T Consensus 217 artPLiisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~ 296 (796)
T PRK12906 217 ARTPLIISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTA 296 (796)
T ss_pred CCCceecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhh
Confidence 00011111211111111000 001111
Q ss_pred --------------------------------------------------------------------------------
Q 035988 253 -------------------------------------------------------------------------------- 252 (692)
Q Consensus 253 -------------------------------------------------------------------------------- 252 (692)
T Consensus 297 ~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~ 376 (796)
T PRK12906 297 LAHHIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYK 376 (796)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcc
Confidence
Q ss_pred ----EecccchhhHHHHHHHhcccceEEEeccCCCCcceEEEeec-cCcchHHHHHHHHHHHHhCCCCCceEEEEeccch
Q 035988 253 ----LTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREK-SSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKE 327 (692)
Q Consensus 253 ----lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~-~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~ 327 (692)
||+|+... ...+.+..++ .++.-|.++|......... ......++..+.+.+......+.|+||||+|+..
T Consensus 377 kl~GmTGTa~~e-~~Ef~~iY~l---~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~ 452 (796)
T PRK12906 377 KLSGMTGTAKTE-EEEFREIYNM---EVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIES 452 (796)
T ss_pred hhhccCCCCHHH-HHHHHHHhCC---CEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHH
Confidence 23332211 1122222222 1233444555443322211 1123456778888887666689999999999999
Q ss_pred HHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCC---Ccc-----EEEEeCCCCCHHHH
Q 035988 328 CEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKP---DVR-----FVIHHSLSKSVETY 399 (692)
Q Consensus 328 ~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip---~v~-----~VI~~~~P~s~~~y 399 (692)
++.++..|.+.|+++..+||++...++..+.+.++.|. |+|||+++|||+|++ +|. +||+++.|.|...|
T Consensus 453 se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~ 530 (796)
T PRK12906 453 SERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRID 530 (796)
T ss_pred HHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHH
Confidence 99999999999999999999999888898888888887 999999999999994 899 99999999999999
Q ss_pred HHHHhhcCCCCCCCeeEeecCCCC
Q 035988 400 YQESGRAGRDGLPSECLLFFRPAD 423 (692)
Q Consensus 400 ~Qr~GRagR~G~~g~~i~l~~~~d 423 (692)
.|+.||+||.|.+|.+..|++..|
T Consensus 531 ~Ql~GRtGRqG~~G~s~~~~sleD 554 (796)
T PRK12906 531 NQLRGRSGRQGDPGSSRFYLSLED 554 (796)
T ss_pred HHHhhhhccCCCCcceEEEEeccc
Confidence 999999999999999999999886
No 87
>PRK09694 helicase Cas3; Provisional
Probab=99.96 E-value=1.1e-26 Score=269.62 Aligned_cols=313 Identities=13% Similarity=0.102 Sum_probs=200.6
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHh---c--CCeEEEEcccHHHHHHHHHHHHH-----c-C
Q 035988 87 FGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVL---R--EGIALVVSPLLSLIQDQVMCLAA-----L-G 155 (692)
Q Consensus 87 fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~---~--~~~~lvi~Pt~~L~~q~~~~l~~-----~-g 155 (692)
|+...|||+|..+........-+++.||||+|||.+++..+.. . ...+++..||+++++++++++++ + .
T Consensus 282 ~~~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~ 361 (878)
T PRK09694 282 DNGYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFPS 361 (878)
T ss_pred cCCCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCC
Confidence 4444899999988554444566899999999999998876642 2 25899999999999999999875 2 2
Q ss_pred CCEEEEecCCChhHHH-H----------------HHHHHHh-c---CCCccEEEeChhhhhchH-----HHHHHHHhhhh
Q 035988 156 IPAHMLTSTTSKEDEK-F----------------IYKALEK-G---EGELKMLYVTPEKISKSK-----RFMSKLEKCHH 209 (692)
Q Consensus 156 i~~~~~~~~~~~~~~~-~----------------~~~~l~~-~---~~~~~Ili~Tpe~l~~~~-----~~~~~l~~~~~ 209 (692)
..+...+|........ . ....... + .--..|+|+|++++.... .++..+ .
T Consensus 362 ~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~----~ 437 (878)
T PRK09694 362 PNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGF----G 437 (878)
T ss_pred CceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHH----h
Confidence 3455555543311100 0 0000000 0 013689999999886310 111111 1
Q ss_pred cCCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccce--------E-EEec-
Q 035988 210 AGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKC--------I-KFVS- 279 (692)
Q Consensus 210 ~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~--------~-~~~~- 279 (692)
-.-++|||||+|.+..+. ...+..+-.... ..+.++|+||||++....+.+.+.++.... . ....
T Consensus 438 -La~svvIiDEVHAyD~ym---~~lL~~~L~~l~-~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~ 512 (878)
T PRK09694 438 -LGRSVLIVDEVHAYDAYM---YGLLEAVLKAQA-QAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGV 512 (878)
T ss_pred -hccCeEEEechhhCCHHH---HHHHHHHHHHHH-hcCCcEEEEeCCCCHHHHHHHHHHhcccccccccccccccccccc
Confidence 123589999999974321 111222111111 236789999999999888877765543210 0 0000
Q ss_pred --------cCC----CCcceEEEeeccCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCC---CceeE
Q 035988 280 --------TIN----RPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRG---ISADY 344 (692)
Q Consensus 280 --------~~~----r~~l~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g---~~v~~ 344 (692)
... .......+.............+.+.+.+....+++++|||||++.|+.+++.|++.+ ..+..
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~l 592 (878)
T PRK09694 513 NGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDL 592 (878)
T ss_pred ccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEE
Confidence 000 001111111110000000122333333322378899999999999999999999865 67999
Q ss_pred eccCCCHHHH----HHHHHHH-hcCC---CcEEEeccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCC
Q 035988 345 YHADMDINAR----EKVHMRW-SKNK---LQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGL 411 (692)
Q Consensus 345 ~h~~~~~~eR----~~~~~~f-~~g~---~~ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~ 411 (692)
+||.++..+| ..+++.| ++|+ ..|||||+++++|+|+ +++++|....| ++.|+||+||+||.+.
T Consensus 593 lHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 593 FHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred EeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 9999999999 4567778 6665 4699999999999999 68999999888 8899999999999886
No 88
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=2.7e-26 Score=261.07 Aligned_cols=327 Identities=18% Similarity=0.195 Sum_probs=225.9
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc---CCeEEEEcccHHHHHHHHHHHHHc--
Q 035988 80 DDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR---EGIALVVSPLLSLIQDQVMCLAAL-- 154 (692)
Q Consensus 80 ~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~---~~~~lvi~Pt~~L~~q~~~~l~~~-- 154 (692)
.++-++.+|. +|+-.|.+-.+.-+..-|+.|+||+|||++|.+|++.. +..++|++|++.||.|.++.+..+
T Consensus 72 rEa~~R~lg~---~~ydvQliGg~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al~G~~V~VvTpn~yLA~qd~e~m~~l~~ 148 (896)
T PRK13104 72 REVSLRTLGL---RHFDVQLIGGMVLHEGNIAEMRTGEGKTLVATLPAYLNAISGRGVHIVTVNDYLAKRDSQWMKPIYE 148 (896)
T ss_pred HHHHHHHcCC---CcchHHHhhhhhhccCccccccCCCCchHHHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHhc
Confidence 3444455675 44445555565556667999999999999999999843 567999999999999999988864
Q ss_pred --CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhh-------hhcCCceEEEEeCccccc
Q 035988 155 --GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKC-------HHAGRLSLISIDEAHCCS 225 (692)
Q Consensus 155 --gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~-------~~~~~l~~iVIDEaH~l~ 225 (692)
|+++.++.|+.+...+...+ .++|+|+||+.|. .+++... .....+.++||||||.++
T Consensus 149 ~lGLtv~~i~gg~~~~~r~~~y--------~~dIvygT~grlg-----fDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiL 215 (896)
T PRK13104 149 FLGLTVGVIYPDMSHKEKQEAY--------KADIVYGTNNEYG-----FDYLRDNMAFSLTDKVQRELNFAIVDEVDSIL 215 (896)
T ss_pred ccCceEEEEeCCCCHHHHHHHh--------CCCEEEECChhhh-----HHHHhcCCccchHhhhccccceEEeccHhhhh
Confidence 89999999988776554333 5899999999872 1222221 122579999999999875
Q ss_pred c-----------cCCCchHHHHHHHHHHhhC---------------CCCCEEEEecccchhhHH----------------
Q 035988 226 Q-----------WGHDFRPDYKNLGILKTQF---------------PDVPMMALTATATQKVQN---------------- 263 (692)
Q Consensus 226 ~-----------~g~~fr~~~~~l~~l~~~~---------------~~~~~i~lSAT~~~~~~~---------------- 263 (692)
= -.......|..+..+...+ .....+.||-.-...+..
T Consensus 216 IDeArtPLIISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~ 295 (896)
T PRK13104 216 IDEARTPLIISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYH 295 (896)
T ss_pred hhccCCceeeeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccC
Confidence 1 1111122232222211111 011223333221100000
Q ss_pred --------HHHHHh------------------------------------------------------------------
Q 035988 264 --------DLMEML------------------------------------------------------------------ 269 (692)
Q Consensus 264 --------~i~~~l------------------------------------------------------------------ 269 (692)
.+...|
T Consensus 296 ~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~ 375 (896)
T PRK13104 296 ASNIMLMHHVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNF 375 (896)
T ss_pred chhhhHHHHHHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHH
Confidence 000000
Q ss_pred ----------------------cccceEEEeccCCCCcceEEEee-ccCcchHHHHHHHHHHHHhCCCCCceEEEEeccc
Q 035988 270 ----------------------HIRKCIKFVSTINRPNLFYMVRE-KSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRK 326 (692)
Q Consensus 270 ----------------------~~~~~~~~~~~~~r~~l~~~v~~-~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~ 326 (692)
.+.+..++.-|.++|.+...... .......++..+.+.+.+.+..+.|+||||+|++
T Consensus 376 Fr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie 455 (896)
T PRK13104 376 FRMYNKLSGMTGTADTEAYEFQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIE 455 (896)
T ss_pred HHhcchhccCCCCChhHHHHHHHHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHH
Confidence 00011122234444443221111 1112345677788888777779999999999999
Q ss_pred hHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCC-----------------------
Q 035988 327 ECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPD----------------------- 383 (692)
Q Consensus 327 ~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~----------------------- 383 (692)
.++.++..|+..|++...+||+++..+|..+.+.|+.|. |+|||+++|||+|+.=
T Consensus 456 ~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~ 533 (896)
T PRK13104 456 ASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAV 533 (896)
T ss_pred HHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHH
Confidence 999999999999999999999999999999999999995 9999999999999861
Q ss_pred ---------------ccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCH
Q 035988 384 ---------------VRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADV 424 (692)
Q Consensus 384 ---------------v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~ 424 (692)
=-+||-...+.|-.-=-|-.||+||.|.||.+-.|++..|-
T Consensus 534 ~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 534 KKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred HHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 12588888999999999999999999999999999998773
No 89
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=2.7e-25 Score=252.94 Aligned_cols=328 Identities=20% Similarity=0.194 Sum_probs=230.8
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHh---cCCeEEEEcccHHHHHHHHHHHHHc-
Q 035988 79 ADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVL---REGIALVVSPLLSLIQDQVMCLAAL- 154 (692)
Q Consensus 79 ~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~---~~~~~lvi~Pt~~L~~q~~~~l~~~- 154 (692)
+.++.++.+|+ .+++.|.-.-=.+ .+.-|+.|+||+|||+++.+|++. .+..+-|++|+..||.|.++.+..+
T Consensus 70 vrEa~~R~lg~-~~~dvQlig~l~L--~~G~Iaem~TGeGKTLva~lpa~l~aL~G~~V~IvTpn~yLA~rd~e~~~~l~ 146 (830)
T PRK12904 70 VREASKRVLGM-RHFDVQLIGGMVL--HEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLY 146 (830)
T ss_pred HHHHHHHHhCC-CCCccHHHhhHHh--cCCchhhhhcCCCcHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHH
Confidence 34445556777 4566666544334 344599999999999999999963 3566789999999999999887764
Q ss_pred ---CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHH---hhhhcCCceEEEEeCcccccc--
Q 035988 155 ---GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLE---KCHHAGRLSLISIDEAHCCSQ-- 226 (692)
Q Consensus 155 ---gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~---~~~~~~~l~~iVIDEaH~l~~-- 226 (692)
|+++.++.++.+..++...+ .++|+|+||..+.- ..+.+.+. ....+..+.++||||||.++=
T Consensus 147 ~~LGlsv~~i~~~~~~~er~~~y--------~~dI~ygT~~elgf-DyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDe 217 (830)
T PRK12904 147 EFLGLSVGVILSGMSPEERREAY--------AADITYGTNNEFGF-DYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDE 217 (830)
T ss_pred hhcCCeEEEEcCCCCHHHHHHhc--------CCCeEEECCcchhh-hhhhcccccchhhhcccccceEEEechhhheecc
Confidence 89999999998887665543 58999999998821 01112111 112356789999999998641
Q ss_pred ---------cCCCchHHHHHHHHHHhhCC---------CC----------------------------------------
Q 035988 227 ---------WGHDFRPDYKNLGILKTQFP---------DV---------------------------------------- 248 (692)
Q Consensus 227 ---------~g~~fr~~~~~l~~l~~~~~---------~~---------------------------------------- 248 (692)
-.......|..+..+...+. ..
T Consensus 218 ArtpLiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A 297 (830)
T PRK12904 218 ARTPLIISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRA 297 (830)
T ss_pred CCCceeeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHH
Confidence 00001111111111111110 00
Q ss_pred ---------------------------------------------------------------------CEEEEecccch
Q 035988 249 ---------------------------------------------------------------------PMMALTATATQ 259 (692)
Q Consensus 249 ---------------------------------------------------------------------~~i~lSAT~~~ 259 (692)
.+.+||+|+..
T Consensus 298 ~~l~~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~t 377 (830)
T PRK12904 298 HELFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADT 377 (830)
T ss_pred HHHHhcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHH
Confidence 11224444432
Q ss_pred hhHHHHHHHhcccceEEEeccCCCCcceEEEeec-cCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHC
Q 035988 260 KVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREK-SSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQR 338 (692)
Q Consensus 260 ~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~-~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~ 338 (692)
. ...+.+..++ .++.-|.++|......... ......++..+.+.+.+.+..+.|+||||+|++.++.++..|...
T Consensus 378 e-~~E~~~iY~l---~vv~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~ 453 (830)
T PRK12904 378 E-AEEFREIYNL---DVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKA 453 (830)
T ss_pred H-HHHHHHHhCC---CEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC
Confidence 2 2223333332 2334555666554432211 112345678888888775558899999999999999999999999
Q ss_pred CCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCc----------------------------------
Q 035988 339 GISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDV---------------------------------- 384 (692)
Q Consensus 339 g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v---------------------------------- 384 (692)
|+++..+||. ..+|+..+..|..+...|+|||+++|||+|++=-
T Consensus 454 gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 531 (830)
T PRK12904 454 GIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVL 531 (830)
T ss_pred CCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHH
Confidence 9999999996 7799999999999999999999999999999742
Q ss_pred ----cEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCH
Q 035988 385 ----RFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADV 424 (692)
Q Consensus 385 ----~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~ 424 (692)
-+||....|.|..---|-.||+||.|.||.+-.|++..|-
T Consensus 532 ~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~ 575 (830)
T PRK12904 532 EAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 575 (830)
T ss_pred HcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcH
Confidence 2599999999999999999999999999999999998873
No 90
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.95 E-value=2.6e-27 Score=241.60 Aligned_cols=273 Identities=15% Similarity=0.205 Sum_probs=186.0
Q ss_pred eEEEEcccHHHHHHHHHHHHHcC-------CCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHH
Q 035988 133 IALVVSPLLSLIQDQVMCLAALG-------IPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLE 205 (692)
Q Consensus 133 ~~lvi~Pt~~L~~q~~~~l~~~g-------i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~ 205 (692)
.++|+-|.++|++|....++++. ++...+.++.....+ ...+. .+.+|+|+||+++..+.. .
T Consensus 288 ~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q---~~ql~---~g~~ivvGtpgRl~~~is-----~ 356 (725)
T KOG0349|consen 288 EAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQ---CKQLK---DGTHIVVGTPGRLLQPIS-----K 356 (725)
T ss_pred ceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHH---HHHhh---cCceeeecCchhhhhhhh-----c
Confidence 58999999999999999777652 122233333322222 22222 279999999998764211 2
Q ss_pred hhhhcCCceEEEEeCcccccccCCCchHHHHHHH-HHHhhC---CCCCEEEEecccchh-hHHHHHHHhcccceEEEecc
Q 035988 206 KCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLG-ILKTQF---PDVPMMALTATATQK-VQNDLMEMLHIRKCIKFVST 280 (692)
Q Consensus 206 ~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~-~l~~~~---~~~~~i~lSAT~~~~-~~~~i~~~l~~~~~~~~~~~ 280 (692)
....+.+..++|+|||+.++..| +...+.++. .+.... ...+.++.|||+..- +...-.+.+.++..+-....
T Consensus 357 g~~~lt~crFlvlDead~lL~qg--y~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkge 434 (725)
T KOG0349|consen 357 GLVTLTHCRFLVLDEADLLLGQG--YDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGE 434 (725)
T ss_pred cceeeeeeEEEEecchhhhhhcc--cHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccc
Confidence 34456789999999999998766 544444432 222222 235678999998542 22222233333322222111
Q ss_pred CCC----------------------------------CcceEEEeeccCcchHHH-----HHHHHHHHHhCCCCCceEEE
Q 035988 281 INR----------------------------------PNLFYMVREKSSVGKVVI-----DEIAKYIQESYPNSESGIVY 321 (692)
Q Consensus 281 ~~r----------------------------------~~l~~~v~~~~~~~~~~~-----~~l~~~l~~~~~~~~~~IIf 321 (692)
... .|+..-....+.. .... +.-+..++.+ .-.++|||
T Consensus 435 D~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~-s~a~kilkgEy~v~ai~~h--~mdkaiif 511 (725)
T KOG0349|consen 435 DLVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENP-SSATKILKGEYGVVAIRRH--AMDKAIIF 511 (725)
T ss_pred cccchhhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCCh-hhhhHHhcCchhhhhhhhh--ccCceEEE
Confidence 111 1111111111110 0000 1222334444 67899999
Q ss_pred EeccchHHHHHHHHHHCC---CceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEEeCCCCCHHH
Q 035988 322 CFSRKECEQVAQELRQRG---ISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVET 398 (692)
Q Consensus 322 ~~s~~~~e~l~~~L~~~g---~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~ 398 (692)
|.|+.+|+.|.+++.+.| ++|.++||+..+.+|...++.|+.+..+.||||+++++|+|+.++-++|+..+|....+
T Consensus 512 crtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~n 591 (725)
T KOG0349|consen 512 CRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTN 591 (725)
T ss_pred EeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccch
Confidence 999999999999999874 68999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCeeEeecCC
Q 035988 399 YYQESGRAGRDGLPSECLLFFRP 421 (692)
Q Consensus 399 y~Qr~GRagR~G~~g~~i~l~~~ 421 (692)
|+||+||.||+-+.|.+|.++..
T Consensus 592 yvhrigrvgraermglaislvat 614 (725)
T KOG0349|consen 592 YVHRIGRVGRAERMGLAISLVAT 614 (725)
T ss_pred hhhhhhccchhhhcceeEEEeec
Confidence 99999999999999999988753
No 91
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.94 E-value=7.2e-25 Score=219.05 Aligned_cols=296 Identities=18% Similarity=0.252 Sum_probs=213.6
Q ss_pred CCCHHHHHHHHHHH----cCCCEEEEecCCChhHH-HHHH--HHHhcCCeEEEEcccHHHHHHHHHHHHHc--CCCEEEE
Q 035988 91 AYRANQQEIINAVL----SGRDVLVIMAAGGGKSL-CYQL--PAVLREGIALVVSPLLSLIQDQVMCLAAL--GIPAHML 161 (692)
Q Consensus 91 ~~r~~Q~~ai~~il----~g~dviv~apTGsGKTl-~~~l--pal~~~~~~lvi~Pt~~L~~q~~~~l~~~--gi~~~~~ 161 (692)
+++|+|+.+-+.++ +.++.|++|-||+|||. .|+. .++..++++.+.+|....+-+.+.+++.. +..+..+
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~L 176 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLL 176 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhccCCeeeE
Confidence 78999998776655 57899999999999995 4442 34567899999999999999999999874 6888899
Q ss_pred ecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHH-HHHHHH
Q 035988 162 TSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPD-YKNLGI 240 (692)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~-~~~l~~ 240 (692)
+|+..... ...++|+|.+.|. +|.+ .++++||||+|... |..+ ......
T Consensus 177 yg~S~~~f-------------r~plvVaTtHQLl---rFk~---------aFD~liIDEVDAFP-----~~~d~~L~~Av 226 (441)
T COG4098 177 YGDSDSYF-------------RAPLVVATTHQLL---RFKQ---------AFDLLIIDEVDAFP-----FSDDQSLQYAV 226 (441)
T ss_pred ecCCchhc-------------cccEEEEehHHHH---HHHh---------hccEEEEecccccc-----ccCCHHHHHHH
Confidence 98876542 4689999999876 4543 58999999999854 3222 222222
Q ss_pred HHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEeccCCCCcc---eEEEeeccCc---chHHHHHHHHHHHHhCCC
Q 035988 241 LKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNL---FYMVREKSSV---GKVVIDEIAKYIQESYPN 314 (692)
Q Consensus 241 l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l---~~~v~~~~~~---~~~~~~~l~~~l~~~~~~ 314 (692)
-...-++-.+|++|||++......+... ....+.+...+.+..+ .+.......+ ....-..|..+|+.+...
T Consensus 227 ~~ark~~g~~IylTATp~k~l~r~~~~g--~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~ 304 (441)
T COG4098 227 KKARKKEGATIYLTATPTKKLERKILKG--NLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKT 304 (441)
T ss_pred HHhhcccCceEEEecCChHHHHHHhhhC--CeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhc
Confidence 2333457789999999998777665431 1112233333333222 1111111111 111123688888887778
Q ss_pred CCceEEEEeccchHHHHHHHHHHC--CCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEEeCC
Q 035988 315 SESGIVYCFSRKECEQVAQELRQR--GISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSL 392 (692)
Q Consensus 315 ~~~~IIf~~s~~~~e~l~~~L~~~--g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~~ 392 (692)
+.+++||+++++..+.++..|+.. ...+...|+. +..|.+..++|++|++.+||+|.+++||+.+|+|++.+.-.-
T Consensus 305 ~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgae 382 (441)
T COG4098 305 GRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAE 382 (441)
T ss_pred CCcEEEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCC
Confidence 899999999999999999999654 3345778886 568999999999999999999999999999999998664433
Q ss_pred C--CCHHHHHHHHhhcCCCCCC--CeeEeecC
Q 035988 393 S--KSVETYYQESGRAGRDGLP--SECLLFFR 420 (692)
Q Consensus 393 P--~s~~~y~Qr~GRagR~G~~--g~~i~l~~ 420 (692)
- .+-+.++|.+||+||.-.. |..+.|..
T Consensus 383 h~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~ 414 (441)
T COG4098 383 HRVFTESALVQIAGRVGRSLERPTGDVLFFHY 414 (441)
T ss_pred cccccHHHHHHHhhhccCCCcCCCCcEEEEec
Confidence 3 5788999999999996433 55554443
No 92
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.94 E-value=2.4e-25 Score=246.18 Aligned_cols=317 Identities=21% Similarity=0.307 Sum_probs=228.6
Q ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHH---hcCCeEEEEcccHHHHHHHHHHHHHcCCCEEEEe
Q 035988 86 VFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAV---LREGIALVVSPLLSLIQDQVMCLAALGIPAHMLT 162 (692)
Q Consensus 86 ~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal---~~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~ 162 (692)
.|+| .+-++|++||-++..|..|+|.|+|.+|||+++-..+. .++.++++-+|.++|-+|-++.|+..--.+..++
T Consensus 293 ~~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQKfRDFk~tF~DvgLlT 371 (1248)
T KOG0947|consen 293 IYPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFKETFGDVGLLT 371 (1248)
T ss_pred hCCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhhccceEecchhhhhccchHHHHHHhccccceee
Confidence 4788 78999999999999999999999999999998654433 4578999999999999999999997534555888
Q ss_pred cCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccc--cCCCchHHHHHHHH
Q 035988 163 STTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQ--WGHDFRPDYKNLGI 240 (692)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~--~g~~fr~~~~~l~~ 240 (692)
|+.... +...++|+|.|.|.++. +...--.+++.+||+||+|-+.+ .|.-+. ..
T Consensus 372 GDvqin-------------PeAsCLIMTTEILRsML-----YrgadliRDvE~VIFDEVHYiND~eRGvVWE------EV 427 (1248)
T KOG0947|consen 372 GDVQIN-------------PEASCLIMTTEILRSML-----YRGADLIRDVEFVIFDEVHYINDVERGVVWE------EV 427 (1248)
T ss_pred cceeeC-------------CCcceEeehHHHHHHHH-----hcccchhhccceEEEeeeeecccccccccce------ee
Confidence 887543 37899999999886421 12333456799999999999875 332111 13
Q ss_pred HHhhCCCCCEEEEecccchhhHHHHHHHhcccc--eEEEeccCCCCcc--eEEEee------------------------
Q 035988 241 LKTQFPDVPMMALTATATQKVQNDLMEMLHIRK--CIKFVSTINRPNL--FYMVRE------------------------ 292 (692)
Q Consensus 241 l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~--~~~~~~~~~r~~l--~~~v~~------------------------ 292 (692)
+....+++.+|+||||.+.. ..+..|.|-.. .+.+.++..||-. +|....
T Consensus 428 iIMlP~HV~~IlLSATVPN~--~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~ 505 (1248)
T KOG0947|consen 428 IIMLPRHVNFILLSATVPNT--LEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDS 505 (1248)
T ss_pred eeeccccceEEEEeccCCCh--HHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhh
Confidence 44456689999999999874 35667766322 2333333333310 000000
Q ss_pred -----------c-c----------------------------Ccc-hHHHHHHHHHHHHhCCCCCceEEEEeccchHHHH
Q 035988 293 -----------K-S----------------------------SVG-KVVIDEIAKYIQESYPNSESGIVYCFSRKECEQV 331 (692)
Q Consensus 293 -----------~-~----------------------------~~~-~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l 331 (692)
. . ... +..+-.++.+++.. .--|+||||.|++.|++.
T Consensus 506 ~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~--~lLP~VvFvFSkkrCde~ 583 (1248)
T KOG0947|consen 506 LKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKK--NLLPVVVFVFSKKRCDEY 583 (1248)
T ss_pred hcccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhc--ccCceEEEEEccccHHHH
Confidence 0 0 000 01244555555544 566899999999999999
Q ss_pred HHHHHHCCC---------------------------------------ceeEeccCCCHHHHHHHHHHHhcCCCcEEEec
Q 035988 332 AQELRQRGI---------------------------------------SADYYHADMDINAREKVHMRWSKNKLQVIVGT 372 (692)
Q Consensus 332 ~~~L~~~g~---------------------------------------~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT 372 (692)
++.|...+. .++++|||+=+--++-+.--|..|-++||+||
T Consensus 584 a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFAT 663 (1248)
T KOG0947|consen 584 ADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFAT 663 (1248)
T ss_pred HHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeeh
Confidence 999964211 35689999999999999999999999999999
Q ss_pred cccccccCCCCccEEEEeCCCC---------CHHHHHHHHhhcCCCCCC--CeeEeecCCC--CHHHHHHHHh
Q 035988 373 VAFGMGINKPDVRFVIHHSLSK---------SVETYYQESGRAGRDGLP--SECLLFFRPA--DVPRQSSMVF 432 (692)
Q Consensus 373 ~~~~~GIDip~v~~VI~~~~P~---------s~~~y~Qr~GRagR~G~~--g~~i~l~~~~--d~~~~~~l~~ 432 (692)
..|+||+|.|. ++||.-.+.+ ++-+|+|++|||||.|-+ |+++++.... +...++.++.
T Consensus 664 ETFAMGVNMPA-RtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~li~ 735 (1248)
T KOG0947|consen 664 ETFAMGVNMPA-RTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRLIM 735 (1248)
T ss_pred hhhhhhcCCCc-eeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhHhc
Confidence 99999999995 5555444443 678999999999999987 7777776543 4555555554
No 93
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=2.1e-24 Score=245.03 Aligned_cols=125 Identities=22% Similarity=0.155 Sum_probs=105.1
Q ss_pred hHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEecccccc
Q 035988 298 KVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGM 377 (692)
Q Consensus 298 ~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~ 377 (692)
..++..+.+.+...+..+.|+||-|.|+...+.++..|.+.|++...+++.-...+-..+.+.-+.| .|.|||+++||
T Consensus 551 ~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~~~Ea~iia~AG~~g--~VTIATNmAGR 628 (970)
T PRK12899 551 REKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNHAQEAEIIAGAGKLG--AVTVATNMAGR 628 (970)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchhhhHHHHHHhcCCCC--cEEEeeccccC
Confidence 3566777777777767899999999999999999999999999999999986655555554444434 49999999999
Q ss_pred ccCCC--------CccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCH
Q 035988 378 GINKP--------DVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADV 424 (692)
Q Consensus 378 GIDip--------~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~ 424 (692)
|.|+. +--+||....|.|..---|-.||+||.|.+|.+..|++..|-
T Consensus 629 GTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~lSlEDd 683 (970)
T PRK12899 629 GTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFLSFEDR 683 (970)
T ss_pred CcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEEEcchH
Confidence 99985 223699999999999999999999999999999999998773
No 94
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.94 E-value=1.7e-25 Score=252.72 Aligned_cols=333 Identities=22% Similarity=0.256 Sum_probs=238.5
Q ss_pred hcCCCCCCHHHHHHHHHHHcC-CCEEEEecCCChhHHHHHHHHHhc--------------CCeEEEEcccHHHHHHHHHH
Q 035988 86 VFGIPAYRANQQEIINAVLSG-RDVLVIMAAGGGKSLCYQLPAVLR--------------EGIALVVSPLLSLIQDQVMC 150 (692)
Q Consensus 86 ~fg~~~~r~~Q~~ai~~il~g-~dviv~apTGsGKTl~~~lpal~~--------------~~~~lvi~Pt~~L~~q~~~~ 150 (692)
.+|..+|.++|..+.++++.+ .+++++||||+|||-.+++-++.. ..++++|+|..+|++.++..
T Consensus 304 F~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~Vgs 383 (1674)
T KOG0951|consen 304 FFGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGS 383 (1674)
T ss_pred cccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHH
Confidence 478899999999999999976 579999999999999999888743 24899999999999999986
Q ss_pred HH----HcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccc-c
Q 035988 151 LA----ALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCC-S 225 (692)
Q Consensus 151 l~----~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l-~ 225 (692)
+. .+||.+.-.+|+....... +. +..|+++|||+.--..+- -......+-++++||||.|.+ -
T Consensus 384 fSkRla~~GI~V~ElTgD~~l~~~q-----ie----eTqVIV~TPEK~DiITRk---~gdraY~qlvrLlIIDEIHLLhD 451 (1674)
T KOG0951|consen 384 FSKRLAPLGITVLELTGDSQLGKEQ-----IE----ETQVIVTTPEKWDIITRK---SGDRAYEQLVRLLIIDEIHLLHD 451 (1674)
T ss_pred HHhhccccCcEEEEecccccchhhh-----hh----cceeEEeccchhhhhhcc---cCchhHHHHHHHHhhhhhhhccc
Confidence 54 4699999999987644221 11 689999999987321110 000011124688999999998 3
Q ss_pred ccCCCchHHHHHH-HHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEE--EeccCCCCcceEEEeeccCcchH---
Q 035988 226 QWGHDFRPDYKNL-GILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIK--FVSTINRPNLFYMVREKSSVGKV--- 299 (692)
Q Consensus 226 ~~g~~fr~~~~~l-~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~--~~~~~~r~~l~~~v~~~~~~~~~--- 299 (692)
++|.-......+. ......-.++.++++|||+|. ..++..+|+....-. |..++..-.+.+.+.....+...
T Consensus 452 dRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPN--y~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~ 529 (1674)
T KOG0951|consen 452 DRGPVLESIVARTFRRSESTEEGSRLVGLSATLPN--YEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRF 529 (1674)
T ss_pred ccchHHHHHHHHHHHHhhhcccCceeeeecccCCc--hhhhHHHhccCcccccccCcccCcCCccceEeccccCCchHHH
Confidence 4564332222221 111112347789999999997 578888887665332 33344444555555544332211
Q ss_pred --HHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHC-------------------------------------CC
Q 035988 300 --VIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQR-------------------------------------GI 340 (692)
Q Consensus 300 --~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~-------------------------------------g~ 340 (692)
.-+...+-+.++. ...++|||+.||+++-..|+.++.. .+
T Consensus 530 qamNe~~yeKVm~~a-gk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpy 608 (1674)
T KOG0951|consen 530 QAMNEACYEKVLEHA-GKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPY 608 (1674)
T ss_pred HHHHHHHHHHHHHhC-CCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhc
Confidence 1223444455554 4489999999999998888887621 23
Q ss_pred ceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEE----EeCC------CCCHHHHHHHHhhcCCCC
Q 035988 341 SADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVI----HHSL------SKSVETYYQESGRAGRDG 410 (692)
Q Consensus 341 ~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI----~~~~------P~s~~~y~Qr~GRagR~G 410 (692)
..+++|+||+..+|..+.+.|.+|.++|+|+|..+++|+|+|.-.++| -|++ +-++.+..||.|||||.+
T Consensus 609 gfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~ 688 (1674)
T KOG0951|consen 609 GFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQ 688 (1674)
T ss_pred cceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCc
Confidence 577999999999999999999999999999999999999999887777 3443 338899999999999987
Q ss_pred CC--CeeEeecCCCCHHHHHHHHhh
Q 035988 411 LP--SECLLFFRPADVPRQSSMVFY 433 (692)
Q Consensus 411 ~~--g~~i~l~~~~d~~~~~~l~~~ 433 (692)
.+ |..++.-...++.+...+++.
T Consensus 689 ~D~~gegiiit~~se~qyyls~mn~ 713 (1674)
T KOG0951|consen 689 YDTCGEGIIITDHSELQYYLSLMNQ 713 (1674)
T ss_pred cCcCCceeeccCchHhhhhHHhhhh
Confidence 65 677777666666665555443
No 95
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.94 E-value=1.6e-25 Score=267.26 Aligned_cols=305 Identities=20% Similarity=0.256 Sum_probs=192.2
Q ss_pred CCCHHHHHHHHHHHc-----CCCEEEEecCCChhHHHHHH--HHHhc---CCeEEEEcccHHHHHHHHHHHHHcCCCEE-
Q 035988 91 AYRANQQEIINAVLS-----GRDVLVIMAAGGGKSLCYQL--PAVLR---EGIALVVSPLLSLIQDQVMCLAALGIPAH- 159 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~-----g~dviv~apTGsGKTl~~~l--pal~~---~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~- 159 (692)
.+|++|.+||.++.. .+..+++||||||||.+++. -.+.+ .+++||++|+++|+.|+.+.+..++....
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~~ 492 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEGDQ 492 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhccccccc
Confidence 589999999988763 36799999999999976432 22222 36999999999999999999999865432
Q ss_pred EEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHH--hhhhcCCceEEEEeCcccccc----cC---CC
Q 035988 160 MLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLE--KCHHAGRLSLISIDEAHCCSQ----WG---HD 230 (692)
Q Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~--~~~~~~~l~~iVIDEaH~l~~----~g---~~ 230 (692)
.+.+..+... ...... ....+|+|+|++++.. +...... .......+++|||||||+-.. .+ ..
T Consensus 493 ~~~~i~~i~~---L~~~~~--~~~~~I~iaTiQtl~~--~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~ 565 (1123)
T PRK11448 493 TFASIYDIKG---LEDKFP--EDETKVHVATVQGMVK--RILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQ 565 (1123)
T ss_pred chhhhhchhh---hhhhcc--cCCCCEEEEEHHHHHH--hhhccccccccCCCCcccEEEEECCCCCCccccccccchhc
Confidence 1111111110 001111 1257999999998753 1111000 113456789999999999521 00 00
Q ss_pred chH---HHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccc-------------------eEEEeccCCCCcceE
Q 035988 231 FRP---DYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRK-------------------CIKFVSTINRPNLFY 288 (692)
Q Consensus 231 fr~---~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~-------------------~~~~~~~~~r~~l~~ 288 (692)
|+. .|.....+...| +...|+|||||..... ..++.+. ++.+...+....+.+
T Consensus 566 ~~~~~~~~~~yr~iL~yF-dA~~IGLTATP~r~t~----~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~ 640 (1123)
T PRK11448 566 FRDQLDYVSKYRRVLDYF-DAVKIGLTATPALHTT----EIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHF 640 (1123)
T ss_pred cchhhhHHHHHHHHHhhc-CccEEEEecCCccchh----HHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccc
Confidence 221 122223333333 5678999999975433 2333211 111111111100100
Q ss_pred EEe---------e-c---cCcc----------------h----HHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHH
Q 035988 289 MVR---------E-K---SSVG----------------K----VVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQEL 335 (692)
Q Consensus 289 ~v~---------~-~---~~~~----------------~----~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L 335 (692)
... . . .... . ..+..+.+.+... .++++||||.++++|+.+++.|
T Consensus 641 ~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~--~~~KtiIF~~s~~HA~~i~~~L 718 (1123)
T PRK11448 641 EKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPT--GEGKTLIFAATDAHADMVVRLL 718 (1123)
T ss_pred cccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhcc--CCCcEEEEEcCHHHHHHHHHHH
Confidence 000 0 0 0000 0 0111222223211 3479999999999999999988
Q ss_pred HHC------CC---ceeEeccCCCHHHHHHHHHHHhcCCC-cEEEeccccccccCCCCccEEEEeCCCCCHHHHHHHHhh
Q 035988 336 RQR------GI---SADYYHADMDINAREKVHMRWSKNKL-QVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGR 405 (692)
Q Consensus 336 ~~~------g~---~v~~~h~~~~~~eR~~~~~~f~~g~~-~ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GR 405 (692)
.+. ++ .+..+||+.+ ++..++++|+++.. .|+|+++++++|+|+|.|.+||++..++|...|.|++||
T Consensus 719 ~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGR 796 (1123)
T PRK11448 719 KEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGR 796 (1123)
T ss_pred HHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhh
Confidence 753 22 4567899875 56789999999887 589999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 035988 406 AGRDGL 411 (692)
Q Consensus 406 agR~G~ 411 (692)
+.|...
T Consensus 797 gtR~~~ 802 (1123)
T PRK11448 797 ATRLCP 802 (1123)
T ss_pred hccCCc
Confidence 999644
No 96
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.93 E-value=7.5e-25 Score=251.94 Aligned_cols=309 Identities=26% Similarity=0.322 Sum_probs=219.2
Q ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHH---HHhcCCeEEEEcccHHHHHHHHHHHHHc-CCC---E
Q 035988 86 VFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLP---AVLREGIALVVSPLLSLIQDQVMCLAAL-GIP---A 158 (692)
Q Consensus 86 ~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lp---al~~~~~~lvi~Pt~~L~~q~~~~l~~~-gi~---~ 158 (692)
.+|| .+.++|++++.++..|..|+++||||+|||++.-.. ++.++.++++.+|.++|.+|.++.+... |-- +
T Consensus 115 ~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl~~~fgdv~~~v 193 (1041)
T COG4581 115 EYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDLLAKFGDVADMV 193 (1041)
T ss_pred hCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCCceEeccchhhhhhhHHHHHHHHhhhhhhhc
Confidence 5788 789999999999999999999999999999885433 4556788999999999999999998754 422 4
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHH
Q 035988 159 HMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNL 238 (692)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l 238 (692)
..++|+.+.. +...++++|.|.|.++.. .....+..+.+||+||+|+|.+.. |....+
T Consensus 194 GL~TGDv~IN-------------~~A~clvMTTEILRnMly-----rg~~~~~~i~~ViFDEvHyi~D~e---RG~VWE- 251 (1041)
T COG4581 194 GLMTGDVSIN-------------PDAPCLVMTTEILRNMLY-----RGSESLRDIEWVVFDEVHYIGDRE---RGVVWE- 251 (1041)
T ss_pred cceecceeeC-------------CCCceEEeeHHHHHHHhc-----cCcccccccceEEEEeeeeccccc---cchhHH-
Confidence 7788877654 278899999997764321 233456789999999999998643 333333
Q ss_pred HHHHhhCCCCCEEEEecccchhhHHHHHHHhcc--cceEEEeccCCCCc-ceEEEe---------eccCc-ch-------
Q 035988 239 GILKTQFPDVPMMALTATATQKVQNDLMEMLHI--RKCIKFVSTINRPN-LFYMVR---------EKSSV-GK------- 298 (692)
Q Consensus 239 ~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~--~~~~~~~~~~~r~~-l~~~v~---------~~~~~-~~------- 298 (692)
..+.....++++++||||.+.. ..+..|++. ..+..+.....||. +...+. ..... ..
T Consensus 252 E~Ii~lP~~v~~v~LSATv~N~--~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~ 329 (1041)
T COG4581 252 EVIILLPDHVRFVFLSATVPNA--EEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSAN 329 (1041)
T ss_pred HHHHhcCCCCcEEEEeCCCCCH--HHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhh
Confidence 1344455578999999999863 455566652 22333333334432 111111 00000 00
Q ss_pred -----------------------------------HHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHH------
Q 035988 299 -----------------------------------VVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQ------ 337 (692)
Q Consensus 299 -----------------------------------~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~------ 337 (692)
.....+...+... ..-++|+|+.|++.|+..+..+..
T Consensus 330 ~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~--~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~ 407 (1041)
T COG4581 330 RSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKD--NLLPAIVFSFSRRGCEEAAQILSTLDLVLT 407 (1041)
T ss_pred hhhhccchhccccCccccccccccccccCCcccccccchHHHhhhhhh--cCCceEEEEEchhhHHHHHHHhcccccccC
Confidence 0001133333322 556899999999999998877641
Q ss_pred ----------------------CCCc-------------eeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCC
Q 035988 338 ----------------------RGIS-------------ADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKP 382 (692)
Q Consensus 338 ----------------------~g~~-------------v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip 382 (692)
.+++ +.++|+||=+..|..+...|..|-++|++||..+++|+|.|
T Consensus 408 ~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmP 487 (1041)
T COG4581 408 EEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMP 487 (1041)
T ss_pred CcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCc
Confidence 1221 34899999999999999999999999999999999999999
Q ss_pred CccEEEEeCCC---------CCHHHHHHHHhhcCCCCCC--CeeEeecCCC
Q 035988 383 DVRFVIHHSLS---------KSVETYYQESGRAGRDGLP--SECLLFFRPA 422 (692)
Q Consensus 383 ~v~~VI~~~~P---------~s~~~y~Qr~GRagR~G~~--g~~i~l~~~~ 422 (692)
. +.|+...+- -+...|.|+.|||||.|.+ |++++...+.
T Consensus 488 a-rtvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~ 537 (1041)
T COG4581 488 A-RTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPF 537 (1041)
T ss_pred c-cceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCC
Confidence 5 444444433 2789999999999999987 8888875443
No 97
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=5.5e-24 Score=241.51 Aligned_cols=327 Identities=18% Similarity=0.175 Sum_probs=225.6
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc---CCeEEEEcccHHHHHHHHHHHHH--
Q 035988 79 ADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR---EGIALVVSPLLSLIQDQVMCLAA-- 153 (692)
Q Consensus 79 ~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~---~~~~lvi~Pt~~L~~q~~~~l~~-- 153 (692)
+.++.++.+|. .+++.|. +-.+.-++.-|+.|+||.|||++|.+|++.. +..+.||+|+..|+.+..+++..
T Consensus 71 vrEaa~R~lgm-~~ydVQl--iGgl~L~~G~IaEm~TGEGKTL~a~lp~~l~al~g~~VhIvT~ndyLA~RD~e~m~~l~ 147 (908)
T PRK13107 71 VREASKRVFEM-RHFDVQL--LGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDAENNRPLF 147 (908)
T ss_pred HHHHHHHHhCC-CcCchHH--hcchHhcCCccccccCCCCchHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 34444556776 3445554 5555556677999999999999999999854 56799999999999998888765
Q ss_pred --cCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhh-hchHHHHHHHH---hhhhcCCceEEEEeCccccccc
Q 035988 154 --LGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKI-SKSKRFMSKLE---KCHHAGRLSLISIDEAHCCSQW 227 (692)
Q Consensus 154 --~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l-~~~~~~~~~l~---~~~~~~~l~~iVIDEaH~l~~~ 227 (692)
+|+++.++.++.+..++...+ .++|+|+||..+ .+ .+.+.+. .......+.++||||||.++-.
T Consensus 148 ~~lGlsv~~i~~~~~~~~r~~~Y--------~~dI~YgT~~e~gfD--yLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiD 217 (908)
T PRK13107 148 EFLGLTVGINVAGLGQQEKKAAY--------NADITYGTNNEFGFD--YLRDNMAFSPQERVQRPLHYALIDEVDSILID 217 (908)
T ss_pred HhcCCeEEEecCCCCHHHHHhcC--------CCCeEEeCCCcccch--hhhccCccchhhhhccccceeeecchhhhccc
Confidence 499999998887764433222 689999999987 32 2222211 1112367899999999987521
Q ss_pred ---------C--CCchHHHHHHHHHHhhC--------------------CCCCEEEE-----------------------
Q 035988 228 ---------G--HDFRPDYKNLGILKTQF--------------------PDVPMMAL----------------------- 253 (692)
Q Consensus 228 ---------g--~~fr~~~~~l~~l~~~~--------------------~~~~~i~l----------------------- 253 (692)
| ..-...|..+..+...+ .....+.|
T Consensus 218 EArtPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~ 297 (908)
T PRK13107 218 EARTPLIISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDS 297 (908)
T ss_pred cCCCceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCccc
Confidence 1 01111222221111100 01111222
Q ss_pred --------------------------------------------------------------------------------
Q 035988 254 -------------------------------------------------------------------------------- 253 (692)
Q Consensus 254 -------------------------------------------------------------------------------- 253 (692)
T Consensus 298 l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~ 377 (908)
T PRK13107 298 LYSAANISLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITF 377 (908)
T ss_pred ccCchhhHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehH
Confidence
Q ss_pred -------------ecccchhhHHHHHHHhcccceEEEeccCCCCcceEEEeec-cCcchHHHHHHHHHHHHhCCCCCceE
Q 035988 254 -------------TATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREK-SSVGKVVIDEIAKYIQESYPNSESGI 319 (692)
Q Consensus 254 -------------SAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~-~~~~~~~~~~l~~~l~~~~~~~~~~I 319 (692)
|+|+.... ..+.+.. ...++.-|.++|......... ......++..+.+.+.+.+..+.|+|
T Consensus 378 QnfFr~Y~kL~GMTGTa~te~-~Ef~~iY---~l~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVL 453 (908)
T PRK13107 378 QNYFRQYEKLAGMTGTADTEA-FEFQHIY---GLDTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVL 453 (908)
T ss_pred HHHHHhhhHhhcccCCChHHH-HHHHHHh---CCCEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEE
Confidence 22221110 1111111 122233344455433222211 11234567788888877777999999
Q ss_pred EEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCC----------------
Q 035988 320 VYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPD---------------- 383 (692)
Q Consensus 320 If~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~---------------- 383 (692)
|||.|+..++.++..|...|+++..+||+++..++..+.+.|+.|. |+|||+++|||+|+.=
T Consensus 454 V~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~ 531 (908)
T PRK13107 454 VGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTA 531 (908)
T ss_pred EEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhh
Confidence 9999999999999999999999999999999999999999999999 9999999999999861
Q ss_pred ---------------------ccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCH
Q 035988 384 ---------------------VRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADV 424 (692)
Q Consensus 384 ---------------------v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~ 424 (692)
=-+||-...+.|-.-=-|-.|||||.|.||.+-.|++..|-
T Consensus 532 ~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 532 EQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 23699999999999999999999999999999999998774
No 98
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.92 E-value=1.3e-24 Score=235.01 Aligned_cols=320 Identities=21% Similarity=0.290 Sum_probs=223.7
Q ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHH--H-HhcCCeEEEEcccHHHHHHHHHHHHHcCCCEEEEe
Q 035988 86 VFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLP--A-VLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLT 162 (692)
Q Consensus 86 ~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lp--a-l~~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~ 162 (692)
.|+| .+-|+|+.+|..+-++..++|.|-|.+|||.++-.. . +....++|+-+|.++|-+|-+++|..---.++..+
T Consensus 125 ~YPF-~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQRVIYTSPIKALSNQKYREl~~EF~DVGLMT 203 (1041)
T KOG0948|consen 125 TYPF-TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQRVIYTSPIKALSNQKYRELLEEFKDVGLMT 203 (1041)
T ss_pred CCCc-ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcCeEEeeChhhhhcchhHHHHHHHhcccceee
Confidence 3566 788999999999999999999999999999885433 2 34468999999999999999999886545677888
Q ss_pred cCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccc--cCCCchHHHHHHHH
Q 035988 163 STTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQ--WGHDFRPDYKNLGI 240 (692)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~--~g~~fr~~~~~l~~ 240 (692)
|+.+.. +.+..+|+|.|.|..+. +...--...+.+||+||+|-|-+ .|--+.. -
T Consensus 204 GDVTIn-------------P~ASCLVMTTEILRsML-----YRGSEvmrEVaWVIFDEIHYMRDkERGVVWEE------T 259 (1041)
T KOG0948|consen 204 GDVTIN-------------PDASCLVMTTEILRSML-----YRGSEVMREVAWVIFDEIHYMRDKERGVVWEE------T 259 (1041)
T ss_pred cceeeC-------------CCCceeeeHHHHHHHHH-----hccchHhheeeeEEeeeehhccccccceeeee------e
Confidence 887764 26789999999886421 12333446799999999999865 2211111 1
Q ss_pred HHhhCCCCCEEEEecccchhhH-HHHHHHhcccceEEEeccCCCCc------------ceEEEeeccCcchHH-------
Q 035988 241 LKTQFPDVPMMALTATATQKVQ-NDLMEMLHIRKCIKFVSTINRPN------------LFYMVREKSSVGKVV------- 300 (692)
Q Consensus 241 l~~~~~~~~~i~lSAT~~~~~~-~~i~~~l~~~~~~~~~~~~~r~~------------l~~~v~~~~~~~~~~------- 300 (692)
+.-..+++..++||||.|.... ......+.-.++.++...+.... ++..+..+....++.
T Consensus 260 IIllP~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~ 339 (1041)
T KOG0948|consen 260 IILLPDNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSV 339 (1041)
T ss_pred EEeccccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHH
Confidence 2223457888999999987432 12223334444544433332211 222222222111111
Q ss_pred -------------------------------HHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCC---------
Q 035988 301 -------------------------------IDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGI--------- 340 (692)
Q Consensus 301 -------------------------------~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~--------- 340 (692)
+-.++..+... ...|+|||+.|+++|+.+|-.+.+..+
T Consensus 340 l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~--~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V 417 (1041)
T KOG0948|consen 340 LRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMER--NYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELV 417 (1041)
T ss_pred hhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhh--cCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHH
Confidence 11333334333 567999999999999999877754211
Q ss_pred ------------------------------ceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEEe
Q 035988 341 ------------------------------SADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHH 390 (692)
Q Consensus 341 ------------------------------~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~ 390 (692)
.+.++|||+-+--++-+.--|..|-+++|+||..|++|+|.|.-.+|+ .
T Consensus 418 ~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvF-T 496 (1041)
T KOG0948|consen 418 ETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVF-T 496 (1041)
T ss_pred HHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEE-e
Confidence 356899999999999999999999999999999999999999655554 3
Q ss_pred CCCC---------CHHHHHHHHhhcCCCCCC--CeeEeecCCC-CHHHHHHHHhh
Q 035988 391 SLSK---------SVETYYQESGRAGRDGLP--SECLLFFRPA-DVPRQSSMVFY 433 (692)
Q Consensus 391 ~~P~---------s~~~y~Qr~GRagR~G~~--g~~i~l~~~~-d~~~~~~l~~~ 433 (692)
..-+ |--.|+|+.|||||.|.+ |.||++++.. +....+.++..
T Consensus 497 ~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~kG 551 (1041)
T KOG0948|consen 497 AVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDMLKG 551 (1041)
T ss_pred eccccCCcceeeecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHhcC
Confidence 3222 566899999999999976 9999998765 33444455543
No 99
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.92 E-value=4e-24 Score=238.59 Aligned_cols=337 Identities=21% Similarity=0.340 Sum_probs=241.7
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHH--HHHHcCCCEEEEecCCChhHHHHHHHHH----hcCCeEEEEcccHHHHHHHHHH
Q 035988 77 SRADDVRLNVFGIPAYRANQQEII--NAVLSGRDVLVIMAAGGGKSLCYQLPAV----LREGIALVVSPLLSLIQDQVMC 150 (692)
Q Consensus 77 ~~~~~~l~~~fg~~~~r~~Q~~ai--~~il~g~dviv~apTGsGKTl~~~lpal----~~~~~~lvi~Pt~~L~~q~~~~ 150 (692)
+...+...+.+|...++.+|.+++ +.++.++++|..+||++|||++.-+-++ .....++.+.|..+.++.-...
T Consensus 209 ~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~ 288 (1008)
T KOG0950|consen 209 TKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISA 288 (1008)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhh
Confidence 344555555689999999999986 6788999999999999999999876554 4468899999999999988888
Q ss_pred HHHc----CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccc
Q 035988 151 LAAL----GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQ 226 (692)
Q Consensus 151 l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~ 226 (692)
+..+ |+++....|..+...... ...+.|+|-|+-. .+++.+-....+..+++|||||.|.+.+
T Consensus 289 l~~~~~~~G~~ve~y~g~~~p~~~~k----------~~sv~i~tiEkan---slin~lie~g~~~~~g~vvVdElhmi~d 355 (1008)
T KOG0950|consen 289 LSPFSIDLGFPVEEYAGRFPPEKRRK----------RESVAIATIEKAN---SLINSLIEQGRLDFLGMVVVDELHMIGD 355 (1008)
T ss_pred hhhhccccCCcchhhcccCCCCCccc----------ceeeeeeehHhhH---hHHHHHHhcCCccccCcEEEeeeeeeec
Confidence 7765 666666666555543211 5689999999875 4555555666677899999999999988
Q ss_pred cCCCchHHHHHHHHHHhhCC--CCCEEEEecccchhhHHHHHHHhcccce------EEEeccCCCCcceEEEeeccCcch
Q 035988 227 WGHDFRPDYKNLGILKTQFP--DVPMMALTATATQKVQNDLMEMLHIRKC------IKFVSTINRPNLFYMVREKSSVGK 298 (692)
Q Consensus 227 ~g~~fr~~~~~l~~l~~~~~--~~~~i~lSAT~~~~~~~~i~~~l~~~~~------~~~~~~~~r~~l~~~v~~~~~~~~ 298 (692)
-|.+......- ..+.-... .+++|+||||.+. ..++..+|.-... +.+..........|... ..
T Consensus 356 ~~rg~~lE~~l-~k~~y~~~~~~~~iIGMSATi~N--~~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~-----r~ 427 (1008)
T KOG0950|consen 356 KGRGAILELLL-AKILYENLETSVQIIGMSATIPN--NSLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESS-----RN 427 (1008)
T ss_pred cccchHHHHHH-HHHHHhccccceeEeeeecccCC--hHHHHHHhhhhheecccCcccchhccCCCcccccch-----hh
Confidence 66554332221 12222222 3569999999986 4566777652211 11111111111222221 01
Q ss_pred HHH----------------HHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHC------------------------
Q 035988 299 VVI----------------DEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQR------------------------ 338 (692)
Q Consensus 299 ~~~----------------~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~------------------------ 338 (692)
..+ +.+..+..+..+.+.++||||++++.|+.++..+...
T Consensus 428 ~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr 507 (1008)
T KOG0950|consen 428 KVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLR 507 (1008)
T ss_pred HHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhh
Confidence 111 2233333444446677999999999999988666320
Q ss_pred --------------CCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEEeCC----CCCHHHHH
Q 035988 339 --------------GISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSL----SKSVETYY 400 (692)
Q Consensus 339 --------------g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~~----P~s~~~y~ 400 (692)
.+.+.++|+|++.++|+.+...|++|.+.|++||+.+..|+|.|..+++|..-. +.+.-+|.
T Consensus 508 ~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~Yk 587 (1008)
T KOG0950|consen 508 RIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYK 587 (1008)
T ss_pred cCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHH
Confidence 124779999999999999999999999999999999999999999999885432 23778999
Q ss_pred HHHhhcCCCCCC--CeeEeecCCCCHHHHHHHHhhh
Q 035988 401 QESGRAGRDGLP--SECLLFFRPADVPRQSSMVFYE 434 (692)
Q Consensus 401 Qr~GRagR~G~~--g~~i~l~~~~d~~~~~~l~~~~ 434 (692)
|++|||||.|-. |.+++++...+..+...++...
T Consensus 588 QM~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv~~~ 623 (1008)
T KOG0950|consen 588 QMVGRAGRTGIDTLGDSILIIKSSEKKRVRELVNSP 623 (1008)
T ss_pred hhhhhhhhcccccCcceEEEeeccchhHHHHHHhcc
Confidence 999999999876 9999999999988877776643
No 100
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.91 E-value=2.1e-22 Score=227.64 Aligned_cols=350 Identities=19% Similarity=0.242 Sum_probs=258.6
Q ss_pred CCCHHHHHHHHHHHcC----CCEEEEecCCChhHHHHHH---HHHhcCCeEEEEcccHHHHHHHHHHHHH-cCCCEEEEe
Q 035988 91 AYRANQQEIINAVLSG----RDVLVIMAAGGGKSLCYQL---PAVLREGIALVVSPLLSLIQDQVMCLAA-LGIPAHMLT 162 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~g----~dviv~apTGsGKTl~~~l---pal~~~~~~lvi~Pt~~L~~q~~~~l~~-~gi~~~~~~ 162 (692)
.+.+.|..+++.+... ...++.+.||||||.+|+= ..+..+..+||++|-++|..|...+|+. +|.++.+++
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlH 277 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLH 277 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhc
Confidence 6789999999999866 5689999999999999962 3355678999999999999999999985 699999999
Q ss_pred cCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccC-CCchHHHHHHHHH
Q 035988 163 STTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWG-HDFRPDYKNLGIL 241 (692)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g-~~fr~~~~~l~~l 241 (692)
|+.+..++...|.....| ..+|+|+|--.++.+ +.++++|||||=|--+--. ...+...+.+..+
T Consensus 278 S~Ls~~er~~~W~~~~~G--~~~vVIGtRSAlF~P------------f~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~ 343 (730)
T COG1198 278 SGLSPGERYRVWRRARRG--EARVVIGTRSALFLP------------FKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVL 343 (730)
T ss_pred ccCChHHHHHHHHHHhcC--CceEEEEechhhcCc------------hhhccEEEEeccccccccCCcCCCcCHHHHHHH
Confidence 999999999999999988 999999998877542 3589999999999854211 1245556778888
Q ss_pred HhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEeccCC---CCcceEEEeeccCcchH--HHHHHHHHHHHhCCCCC
Q 035988 242 KTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTIN---RPNLFYMVREKSSVGKV--VIDEIAKYIQESYPNSE 316 (692)
Q Consensus 242 ~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~---r~~l~~~v~~~~~~~~~--~~~~l~~~l~~~~~~~~ 316 (692)
+....++|+|+-|||++-+....+.. +......+...++ .|++.+........... .-..+++.|++....++
T Consensus 344 Ra~~~~~pvvLgSATPSLES~~~~~~--g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~ge 421 (730)
T COG1198 344 RAKKENAPVVLGSATPSLESYANAES--GKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGE 421 (730)
T ss_pred HHHHhCCCEEEecCCCCHHHHHhhhc--CceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCC
Confidence 88889999999999999765554421 2122233333333 33333322222211111 34567777777777899
Q ss_pred ceEEEEeccc------------------------------------------------------------hHHHHHHHHH
Q 035988 317 SGIVYCFSRK------------------------------------------------------------ECEQVAQELR 336 (692)
Q Consensus 317 ~~IIf~~s~~------------------------------------------------------------~~e~l~~~L~ 336 (692)
++|+|.|.+- .++.+.+.|.
T Consensus 422 Q~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~ 501 (730)
T COG1198 422 QVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELK 501 (730)
T ss_pred eEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHH
Confidence 9999998872 2366677776
Q ss_pred HC--CCceeEeccCCCH--HHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEEeCCCC------------CHHHHH
Q 035988 337 QR--GISADYYHADMDI--NAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSK------------SVETYY 400 (692)
Q Consensus 337 ~~--g~~v~~~h~~~~~--~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~~P~------------s~~~y~ 400 (692)
.. +.++..+.++.+. ..-...+..|.+|+.+|||.|.++.-|.|+|++..|...+... ....+.
T Consensus 502 ~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~ 581 (730)
T COG1198 502 RLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLM 581 (730)
T ss_pred HHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHH
Confidence 65 6677777777654 3346779999999999999999999999999999977555432 456789
Q ss_pred HHHhhcCCCCCCCeeEeecCCCCHHHHHHHHhhhhhhhHhHHHHHHHhcCCccchHHHHHhhhCC
Q 035988 401 QESGRAGRDGLPSECLLFFRPADVPRQSSMVFYENSGLQNLYDIVRYSQYPLHWNIEKVRLVIFE 465 (692)
Q Consensus 401 Qr~GRagR~G~~g~~i~l~~~~d~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~crr~~ll~~f~~ 465 (692)
|-+|||||.+.+|.+++--...|-+.++.+...+- ..|.+.+..-|+...+.-|+-
T Consensus 582 QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~~~dy---------~~F~~~El~~Rk~~~~PPf~~ 637 (730)
T COG1198 582 QVAGRAGRAGKPGEVVIQTYNPDHPAIQALKRGDY---------EAFYEQELAERKELGLPPFSR 637 (730)
T ss_pred HHHhhhccCCCCCeEEEEeCCCCcHHHHHHHhcCH---------HHHHHHHHHHHHhcCCCChhh
Confidence 99999999999999988877777676666655432 334443445565655655543
No 101
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.91 E-value=3.2e-22 Score=234.71 Aligned_cols=315 Identities=18% Similarity=0.138 Sum_probs=212.1
Q ss_pred CCCHHHHHHHHHHH----cCCCEEEEecCCChhHHHHHH--HHHhc----CCeEEEEcccHHHHHHHHHHHHHc--CCCE
Q 035988 91 AYRANQQEIINAVL----SGRDVLVIMAAGGGKSLCYQL--PAVLR----EGIALVVSPLLSLIQDQVMCLAAL--GIPA 158 (692)
Q Consensus 91 ~~r~~Q~~ai~~il----~g~dviv~apTGsGKTl~~~l--pal~~----~~~~lvi~Pt~~L~~q~~~~l~~~--gi~~ 158 (692)
.++|||.+.+..+. .|.+.|+...+|.|||+..+. ..+.. .+.+|||+|. +++.+|.+.+.++ .+++
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p~l~v 247 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFCPVLRA 247 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHCCCCce
Confidence 68999999999876 477899999999999986432 22221 3678999997 6677888888886 3455
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHH
Q 035988 159 HMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNL 238 (692)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l 238 (692)
..++|... .+........ ..+.++|+|+|++++... ...+.. ..+++|||||||++-... ..+
T Consensus 248 ~~~~G~~~--eR~~~~~~~~-~~~~~dVvITSYe~l~~e---~~~L~k----~~W~~VIvDEAHrIKN~~-------Skl 310 (1033)
T PLN03142 248 VKFHGNPE--ERAHQREELL-VAGKFDVCVTSFEMAIKE---KTALKR----FSWRYIIIDEAHRIKNEN-------SLL 310 (1033)
T ss_pred EEEeCCHH--HHHHHHHHHh-cccCCCcceecHHHHHHH---HHHhcc----CCCCEEEEcCccccCCHH-------HHH
Confidence 56665432 2222222211 123789999999988642 222222 368999999999985422 122
Q ss_pred HHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEec----------------------------c----------
Q 035988 239 GILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVS----------------------------T---------- 280 (692)
Q Consensus 239 ~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~----------------------------~---------- 280 (692)
......+.....+++||||-.+...++...|.+-.+-.+.. +
T Consensus 311 skalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV 390 (1033)
T PLN03142 311 SKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDV 390 (1033)
T ss_pred HHHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHH
Confidence 23333344456789999997665555544443221111100 0
Q ss_pred -CCCCcceEEEeecc-C------------------------------------------------------------cch
Q 035988 281 -INRPNLFYMVREKS-S------------------------------------------------------------VGK 298 (692)
Q Consensus 281 -~~r~~l~~~v~~~~-~------------------------------------------------------------~~~ 298 (692)
..-|.....+.... . ...
T Consensus 391 ~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~S 470 (1033)
T PLN03142 391 EKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENS 470 (1033)
T ss_pred hhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhh
Confidence 00000000000000 0 000
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCC---CcEEEecccc
Q 035988 299 VVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNK---LQVIVGTVAF 375 (692)
Q Consensus 299 ~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~---~~ILVaT~~~ 375 (692)
.++..+..++......+.++|||+........|...|...|+....+||+++..+|..+++.|.+.. ..+|++|.+.
T Consensus 471 gKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAG 550 (1033)
T PLN03142 471 GKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAG 550 (1033)
T ss_pred hHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEecccc
Confidence 1122233333333346789999999999999999999999999999999999999999999997632 3578999999
Q ss_pred ccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEee--cCCCC
Q 035988 376 GMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLF--FRPAD 423 (692)
Q Consensus 376 ~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l--~~~~d 423 (692)
|.|||+...++||+||+|+++....|++||+.|.|+...+.+| ++.+-
T Consensus 551 GlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gT 600 (1033)
T PLN03142 551 GLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYT 600 (1033)
T ss_pred ccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCc
Confidence 9999999999999999999999999999999999998665444 44443
No 102
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.91 E-value=5.6e-23 Score=204.08 Aligned_cols=183 Identities=19% Similarity=0.262 Sum_probs=144.7
Q ss_pred CCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc--------CCeEEEEcccHHH
Q 035988 72 TFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR--------EGIALVVSPLLSL 143 (692)
Q Consensus 72 ~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~--------~~~~lvi~Pt~~L 143 (692)
.+++++.+.+.+.+ +|+..|+++|.++++.+++|+++++.+|||+|||++|++|++.. +++++|++|+++|
T Consensus 3 ~~~~~~~i~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L 81 (203)
T cd00268 3 ELGLSPELLRGIYA-LGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTREL 81 (203)
T ss_pred cCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHH
Confidence 57788899999987 79999999999999999999999999999999999999998732 3589999999999
Q ss_pred HHHHHHHHHHc----CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEe
Q 035988 144 IQDQVMCLAAL----GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISID 219 (692)
Q Consensus 144 ~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVID 219 (692)
+.|+...++.+ ++.+..+.|+.........+. ..++|+|+||+.+.. ++. .....+.+++++|+|
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~iiv~T~~~l~~---~l~--~~~~~~~~l~~lIvD 150 (203)
T cd00268 82 ALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK------RGPHIVVATPGRLLD---LLE--RGKLDLSKVKYLVLD 150 (203)
T ss_pred HHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc------CCCCEEEEChHHHHH---HHH--cCCCChhhCCEEEEe
Confidence 99999988876 677788888776654332221 278999999998753 211 222456789999999
Q ss_pred CcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhc
Q 035988 220 EAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLH 270 (692)
Q Consensus 220 EaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~ 270 (692)
|+|.+.+.+ |...+..+ +....++.+++++|||+++.+...+...++
T Consensus 151 E~h~~~~~~--~~~~~~~~--~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~ 197 (203)
T cd00268 151 EADRMLDMG--FEDQIREI--LKLLPKDRQTLLFSATMPKEVRDLARKFLR 197 (203)
T ss_pred ChHHhhccC--hHHHHHHH--HHhCCcccEEEEEeccCCHHHHHHHHHHCC
Confidence 999988665 66665552 223334788999999999887777766655
No 103
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=7.8e-22 Score=224.78 Aligned_cols=125 Identities=24% Similarity=0.282 Sum_probs=114.3
Q ss_pred hHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEecccccc
Q 035988 298 KVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGM 377 (692)
Q Consensus 298 ~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~ 377 (692)
..++..|.+.+......+.|+||||+|++.++.++..|+..|+++..+|+ .+.+|+..+..|..+...|+|||+++||
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGR 658 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGR 658 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCC
Confidence 35678888888776668999999999999999999999999999999998 5779999999999999999999999999
Q ss_pred ccCCC---Ccc-----EEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCH
Q 035988 378 GINKP---DVR-----FVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADV 424 (692)
Q Consensus 378 GIDip---~v~-----~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~ 424 (692)
|+|++ +|. +||++..|.|...|.|++||+||.|.+|.++.|++..|.
T Consensus 659 GtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 659 GTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred CCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 99999 554 359999999999999999999999999999999998774
No 104
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.90 E-value=2.3e-22 Score=217.97 Aligned_cols=299 Identities=19% Similarity=0.268 Sum_probs=213.5
Q ss_pred HHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc------CCeEEEEcccHHHHHHHHHHHHH-c----CCCEEEEe-
Q 035988 95 NQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR------EGIALVVSPLLSLIQDQVMCLAA-L----GIPAHMLT- 162 (692)
Q Consensus 95 ~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~------~~~~lvi~Pt~~L~~q~~~~l~~-~----gi~~~~~~- 162 (692)
+-.+++..+-+++-++++++||||||. |+|-++. .+.+-+.-|.|--+.-..++... . |-.+++-.
T Consensus 55 ~r~~il~~ve~nqvlIviGeTGsGKST--QipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IR 132 (674)
T KOG0922|consen 55 YRDQILYAVEDNQVLIVIGETGSGKST--QIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIR 132 (674)
T ss_pred HHHHHHHHHHHCCEEEEEcCCCCCccc--cHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEE
Confidence 335677788888999999999999998 7887653 35677777998777766666543 3 33333321
Q ss_pred -cCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHH--HHHH
Q 035988 163 -STTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDY--KNLG 239 (692)
Q Consensus 163 -~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~--~~l~ 239 (692)
-+.+. ...+|.|.|-++|.. .+.....+..+++|||||||.-+ ...++ .-|.
T Consensus 133 Fed~ts--------------~~TrikymTDG~LLR------E~l~Dp~LskYsvIIlDEAHERs-----l~TDiLlGlLK 187 (674)
T KOG0922|consen 133 FEDSTS--------------KDTRIKYMTDGMLLR------EILKDPLLSKYSVIILDEAHERS-----LHTDILLGLLK 187 (674)
T ss_pred ecccCC--------------CceeEEEecchHHHH------HHhcCCccccccEEEEechhhhh-----hHHHHHHHHHH
Confidence 11111 168999999998752 23334467889999999999732 22222 2234
Q ss_pred HHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEeccCCCCcceEEEeeccCcchHHHHHHHHHHHHhCCCCCceE
Q 035988 240 ILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGI 319 (692)
Q Consensus 240 ~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~~I 319 (692)
.+.+..++..+|.+|||+.. +.+.++++.-+...+.+....-.+.|...+....-...+..+.++... ++.+-+|
T Consensus 188 ki~~~R~~LklIimSATlda---~kfS~yF~~a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~--E~~GDIL 262 (674)
T KOG0922|consen 188 KILKKRPDLKLIIMSATLDA---EKFSEYFNNAPILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLT--EPPGDIL 262 (674)
T ss_pred HHHhcCCCceEEEEeeeecH---HHHHHHhcCCceEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHcc--CCCCCEE
Confidence 55666778899999999985 445566665444434333333334444333222223333344444333 3677899
Q ss_pred EEEeccchHHHHHHHHHHC----C--C--ceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEEeC
Q 035988 320 VYCFSRKECEQVAQELRQR----G--I--SADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHS 391 (692)
Q Consensus 320 If~~s~~~~e~l~~~L~~~----g--~--~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~ 391 (692)
||....++.+.+++.|.+. + . -+..+||.|+.+++..+++.-..|..+|++||++++..|.+|++++||+-+
T Consensus 263 vFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG 342 (674)
T KOG0922|consen 263 VFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSG 342 (674)
T ss_pred EEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCC
Confidence 9999999999999999865 1 1 246899999999999999888889999999999999999999999999766
Q ss_pred C------------------CCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHHH
Q 035988 392 L------------------SKSVETYYQESGRAGRDGLPSECLLFFRPADVPR 426 (692)
Q Consensus 392 ~------------------P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~ 426 (692)
+ |-|..+-.||+|||||.| +|.|+-+|+..++..
T Consensus 343 ~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~~~ 394 (674)
T KOG0922|consen 343 FVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAYDK 394 (674)
T ss_pred ceEEEeeccccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHHhh
Confidence 5 338889999999999996 899999999988743
No 105
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.90 E-value=2.6e-22 Score=229.97 Aligned_cols=303 Identities=21% Similarity=0.263 Sum_probs=215.4
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc------CCeEEEEcccHHHHHHHHHHHHH-cCCC----EEEEe
Q 035988 94 ANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR------EGIALVVSPLLSLIQDQVMCLAA-LGIP----AHMLT 162 (692)
Q Consensus 94 ~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~------~~~~lvi~Pt~~L~~q~~~~l~~-~gi~----~~~~~ 162 (692)
....+.+.++.++.-+++.+|||||||. ++|..+. ++.+.+.-|.|--|....+++.+ +|.+ +++-.
T Consensus 53 ~~~~~i~~ai~~~~vvii~getGsGKTT--qlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~i 130 (845)
T COG1643 53 AVRDEILKAIEQNQVVIIVGETGSGKTT--QLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSI 130 (845)
T ss_pred HHHHHHHHHHHhCCEEEEeCCCCCChHH--HHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEE
Confidence 3445666777788889999999999998 6776543 35777777998777777766654 3433 33221
Q ss_pred cCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHHHH
Q 035988 163 STTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILK 242 (692)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~ 242 (692)
-..+. . .....|-|+|.+.|. ..+.....+..+++|||||||.=+- ..||.-.+. ..+.
T Consensus 131 Rfe~~----------~--s~~Trik~mTdGiLl------rei~~D~~Ls~ys~vIiDEaHERSl-~tDilLgll--k~~~ 189 (845)
T COG1643 131 RFESK----------V--SPRTRIKVMTDGILL------REIQNDPLLSGYSVVIIDEAHERSL-NTDILLGLL--KDLL 189 (845)
T ss_pred Eeecc----------C--CCCceeEEeccHHHH------HHHhhCcccccCCEEEEcchhhhhH-HHHHHHHHH--HHHH
Confidence 11110 0 126899999999765 3445555678999999999998431 112222222 2333
Q ss_pred hh-CCCCCEEEEecccchhhHHHHHHHhcccceEEEeccCCCCcceEEEeeccCcchHHHHHHHHHHHHhC-CCCCceEE
Q 035988 243 TQ-FPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESY-PNSESGIV 320 (692)
Q Consensus 243 ~~-~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~l~~~l~~~~-~~~~~~II 320 (692)
.. .++..+|.||||+.. +.+.++|+..+.+.+......-.++|.-..... ....+.+...+..+. ...+.+||
T Consensus 190 ~~rr~DLKiIimSATld~---~rfs~~f~~apvi~i~GR~fPVei~Y~~~~~~d--~~l~~ai~~~v~~~~~~~~GdILv 264 (845)
T COG1643 190 ARRRDDLKLIIMSATLDA---ERFSAYFGNAPVIEIEGRTYPVEIRYLPEAEAD--YILLDAIVAAVDIHLREGSGSILV 264 (845)
T ss_pred hhcCCCceEEEEecccCH---HHHHHHcCCCCEEEecCCccceEEEecCCCCcc--hhHHHHHHHHHHHhccCCCCCEEE
Confidence 33 347899999999986 456677776555555444444445553222221 113444555554332 25788999
Q ss_pred EEeccchHHHHHHHHHH----CCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEEeCCCC--
Q 035988 321 YCFSRKECEQVAQELRQ----RGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSK-- 394 (692)
Q Consensus 321 f~~s~~~~e~l~~~L~~----~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~~P~-- 394 (692)
|.+-..+.+.+++.|.+ ....+..+||.|+.+++..+++--..|+.+|++||++++.+|.+|+|++||.-+.-+
T Consensus 265 FLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~ 344 (845)
T COG1643 265 FLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEK 344 (845)
T ss_pred ECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCccccc
Confidence 99999999999999998 347789999999999999988877778777999999999999999999999877543
Q ss_pred ----------------CHHHHHHHHhhcCCCCCCCeeEeecCCCCHH
Q 035988 395 ----------------SVETYYQESGRAGRDGLPSECLLFFRPADVP 425 (692)
Q Consensus 395 ----------------s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~ 425 (692)
|-++..||.|||||.+ +|.||-+|+..+..
T Consensus 345 ~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~~~ 390 (845)
T COG1643 345 RYDPRTGLTRLETEPISKASADQRAGRAGRTG-PGICYRLYSEEDFL 390 (845)
T ss_pred ccccccCceeeeEEEechhhhhhhccccccCC-CceEEEecCHHHHH
Confidence 7889999999999995 89999999987655
No 106
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.89 E-value=7.5e-21 Score=217.03 Aligned_cols=124 Identities=21% Similarity=0.388 Sum_probs=112.5
Q ss_pred HHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccC
Q 035988 301 IDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGIN 380 (692)
Q Consensus 301 ~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GID 380 (692)
++.+.+.+......+.++||||+|++.++.+++.|.+.|+++..+||+++..+|..+++.|+.|++.|+|||+.+++|+|
T Consensus 428 i~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfD 507 (655)
T TIGR00631 428 VDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLD 507 (655)
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCee
Confidence 44555555554447889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEeC-----CCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHH
Q 035988 381 KPDVRFVIHHS-----LSKSVETYYQESGRAGRDGLPSECLLFFRPADVP 425 (692)
Q Consensus 381 ip~v~~VI~~~-----~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~ 425 (692)
+|++++||+++ .|.+..+|+||+|||||. ..|.+++|++..+..
T Consensus 508 iP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~ 556 (655)
T TIGR00631 508 LPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDS 556 (655)
T ss_pred eCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHH
Confidence 99999999988 799999999999999998 589999998876643
No 107
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.89 E-value=2.5e-22 Score=233.93 Aligned_cols=323 Identities=17% Similarity=0.134 Sum_probs=208.5
Q ss_pred CCCHHHHHHHHHHHcC---C-CEEEEecCCChhHHHHHHHHHhc-------CCeEEEEcccHHHHHHHHHHHHHcCCCEE
Q 035988 91 AYRANQQEIINAVLSG---R-DVLVIMAAGGGKSLCYQLPAVLR-------EGIALVVSPLLSLIQDQVMCLAALGIPAH 159 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~g---~-dviv~apTGsGKTl~~~lpal~~-------~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~ 159 (692)
..++.|..++..++.. . .+++.||||+|||++.+.+++.. ..+.+++.|+++++++++++++...-...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~ 274 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFS 274 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcccc
Confidence 3478899999888753 4 78899999999999999887632 47999999999999999999997521111
Q ss_pred ---E-EecCCChhHHHHHHH------HHH--hcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCccccccc
Q 035988 160 ---M-LTSTTSKEDEKFIYK------ALE--KGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQW 227 (692)
Q Consensus 160 ---~-~~~~~~~~~~~~~~~------~l~--~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~ 227 (692)
. .+|.....-...... ... ....-..+.++||............+.. ...-..+++|+||+|.+.+-
T Consensus 275 ~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~S~vIlDE~h~~~~~ 353 (733)
T COG1203 275 VIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEF-LALLLTSLVILDEVHLYADE 353 (733)
T ss_pred cccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHH-HHHHHhhchhhccHHhhccc
Confidence 1 222222111000000 000 0011344555555544320000000000 01113578999999998654
Q ss_pred CCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEecc----CCCCcceEEEeeccCcchHHHHH
Q 035988 228 GHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVST----INRPNLFYMVREKSSVGKVVIDE 303 (692)
Q Consensus 228 g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~----~~r~~l~~~v~~~~~~~~~~~~~ 303 (692)
. ....+..+-.+. ..-+.+++++|||+|+...+.+...++....+....+ .+.+.+.......... .....
T Consensus 354 ~--~~~~l~~~i~~l-~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~--~~~~~ 428 (733)
T COG1203 354 T--MLAALLALLEAL-AEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVED--GPQEE 428 (733)
T ss_pred c--hHHHHHHHHHHH-HhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhh--hhhHh
Confidence 2 122222211111 2238899999999999999998888776554443322 1222221111000000 00012
Q ss_pred HHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHh----cCCCcEEEecccccccc
Q 035988 304 IAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWS----KNKLQVIVGTVAFGMGI 379 (692)
Q Consensus 304 l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~----~g~~~ILVaT~~~~~GI 379 (692)
....+......+.+++|.|||++.|.+++..|+..+.++..+||.+...+|.+.++.+. .+...|+|||++.+.|+
T Consensus 429 ~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagv 508 (733)
T COG1203 429 LIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGV 508 (733)
T ss_pred hhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEe
Confidence 33444444558899999999999999999999998878999999999999988888654 46788999999999999
Q ss_pred CCCCccEEEEeCCCCCHHHHHHHHhhcCCCC--CCCeeEeecCCC
Q 035988 380 NKPDVRFVIHHSLSKSVETYYQESGRAGRDG--LPSECLLFFRPA 422 (692)
Q Consensus 380 Dip~v~~VI~~~~P~s~~~y~Qr~GRagR~G--~~g~~i~l~~~~ 422 (692)
|+. .+++|---.| +.+.+||+||++|.| ..|..+++-...
T Consensus 509 Did-fd~mITe~aP--idSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 509 DID-FDVLITELAP--IDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred ccc-cCeeeecCCC--HHHHHHHHHHHhhcccccCCceeEeeccc
Confidence 994 7777765555 999999999999999 557777665433
No 108
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=2.2e-20 Score=207.68 Aligned_cols=327 Identities=21% Similarity=0.202 Sum_probs=226.9
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHh---cCCeEEEEcccHHHHHHHHHHHHH--
Q 035988 79 ADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVL---REGIALVVSPLLSLIQDQVMCLAA-- 153 (692)
Q Consensus 79 ~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~---~~~~~lvi~Pt~~L~~q~~~~l~~-- 153 (692)
+.++..+.+|+ .+++.|.-..-.++.| -++.|.||.|||++..+|++. .+..+.|++|+--|+.+-++.+..
T Consensus 67 vREa~~R~lg~-r~ydvQlig~l~Ll~G--~VaEM~TGEGKTLvA~l~a~l~AL~G~~VhvvT~NdyLA~RDae~m~~ly 143 (764)
T PRK12326 67 AREAAERTLGL-RPFDVQLLGALRLLAG--DVIEMATGEGKTLAGAIAAAGYALQGRRVHVITVNDYLARRDAEWMGPLY 143 (764)
T ss_pred HHHHHHHHcCC-CcchHHHHHHHHHhCC--CcccccCCCCHHHHHHHHHHHHHHcCCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 44555566787 5778888877777766 488999999999999999875 467899999999999998888765
Q ss_pred --cCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHH---hhhhcCCceEEEEeCccccccc-
Q 035988 154 --LGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLE---KCHHAGRLSLISIDEAHCCSQW- 227 (692)
Q Consensus 154 --~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~---~~~~~~~l~~iVIDEaH~l~~~- 227 (692)
+|+++.++.+..+..++...+ .++|+|+|...+.- ..+.+.+. .......+.+.||||+|.++-.
T Consensus 144 ~~LGLsvg~i~~~~~~~err~aY--------~~DItYgTn~e~gF-DyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDe 214 (764)
T PRK12326 144 EALGLTVGWITEESTPEERRAAY--------ACDVTYASVNEIGF-DVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDE 214 (764)
T ss_pred HhcCCEEEEECCCCCHHHHHHHH--------cCCCEEcCCccccc-ccchhhhccChHhhcCCccceeeecchhhheecc
Confidence 499999999988877666555 68999999987642 12233322 1223456889999999986410
Q ss_pred --------CCC-chHHHHHHHHHHhhCC---------CCC----------------------------------------
Q 035988 228 --------GHD-FRPDYKNLGILKTQFP---------DVP---------------------------------------- 249 (692)
Q Consensus 228 --------g~~-fr~~~~~l~~l~~~~~---------~~~---------------------------------------- 249 (692)
|.. -...|..+..+...+. ...
T Consensus 215 ArtPLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A 294 (764)
T PRK12326 215 ALVPLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHA 294 (764)
T ss_pred ccCceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHH
Confidence 000 0011211111111110 001
Q ss_pred ----------------------------------------------------------------------EEEEecccch
Q 035988 250 ----------------------------------------------------------------------MMALTATATQ 259 (692)
Q Consensus 250 ----------------------------------------------------------------------~i~lSAT~~~ 259 (692)
+-+||+|+..
T Consensus 295 ~~l~~~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t 374 (764)
T PRK12326 295 HALLQRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVA 374 (764)
T ss_pred HHHHhcCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChh
Confidence 1124444432
Q ss_pred hhHHHHHHHhcccceEEEeccCCCCcceEEEee-ccCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHC
Q 035988 260 KVQNDLMEMLHIRKCIKFVSTINRPNLFYMVRE-KSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQR 338 (692)
Q Consensus 260 ~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~-~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~ 338 (692)
. .+.+.+..++. ++.-|.++|........ .......++..+.+.+...+..+.|+||.|.|++.++.++..|.+.
T Consensus 375 ~-~~Ef~~iY~l~---Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~ 450 (764)
T PRK12326 375 A-GEQLRQFYDLG---VSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAA 450 (764)
T ss_pred H-HHHHHHHhCCc---EEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhC
Confidence 2 22333333333 33445555554332211 1122345677888888777779999999999999999999999999
Q ss_pred CCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCC---------------CccEEEEeCCCCCHHHHHHHH
Q 035988 339 GISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKP---------------DVRFVIHHSLSKSVETYYQES 403 (692)
Q Consensus 339 g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip---------------~v~~VI~~~~P~s~~~y~Qr~ 403 (692)
|++...+++.-...+-..+.+.-+.|. |.|||+++|||.|+. +=-+||....|.|..---|-.
T Consensus 451 gI~h~vLNAk~~~~EA~IIa~AG~~ga--VTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLr 528 (764)
T PRK12326 451 GVPAVVLNAKNDAEEARIIAEAGKYGA--VTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLR 528 (764)
T ss_pred CCcceeeccCchHhHHHHHHhcCCCCc--EEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHh
Confidence 999999999866555444544444444 999999999999986 223699999999999999999
Q ss_pred hhcCCCCCCCeeEeecCCCC
Q 035988 404 GRAGRDGLPSECLLFFRPAD 423 (692)
Q Consensus 404 GRagR~G~~g~~i~l~~~~d 423 (692)
||+||.|.||.+-.|++..|
T Consensus 529 GRaGRQGDpGss~f~lSleD 548 (764)
T PRK12326 529 GRAGRQGDPGSSVFFVSLED 548 (764)
T ss_pred cccccCCCCCceeEEEEcch
Confidence 99999999999999999776
No 109
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.87 E-value=2e-21 Score=186.82 Aligned_cols=157 Identities=32% Similarity=0.461 Sum_probs=121.5
Q ss_pred CHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc-----CCeEEEEcccHHHHHHHHHHHHHcC----CCEEEEec
Q 035988 93 RANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR-----EGIALVVSPLLSLIQDQVMCLAALG----IPAHMLTS 163 (692)
Q Consensus 93 r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~-----~~~~lvi~Pt~~L~~q~~~~l~~~g----i~~~~~~~ 163 (692)
||+|.++++.+.+|+++++.||||+|||++|++|++.. ...+++++|+++|++|+.+.+..++ +++..+++
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHG 80 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEEST
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccccc
Confidence 68999999999999999999999999999999988642 2499999999999999999999873 57788887
Q ss_pred CCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHHHHh
Q 035988 164 TTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKT 243 (692)
Q Consensus 164 ~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~ 243 (692)
+........ ..+ .. .++|+|+||+++.. ++.. ...++.++++|||||+|++..++ ++..+..+.....
T Consensus 81 ~~~~~~~~~--~~~-~~--~~~ilv~T~~~l~~---~~~~--~~~~~~~~~~iViDE~h~l~~~~--~~~~~~~i~~~~~ 148 (169)
T PF00270_consen 81 GQSISEDQR--EVL-SN--QADILVTTPEQLLD---LISN--GKINISRLSLIVIDEAHHLSDET--FRAMLKSILRRLK 148 (169)
T ss_dssp TSCHHHHHH--HHH-HT--TSSEEEEEHHHHHH---HHHT--TSSTGTTESEEEEETHHHHHHTT--HHHHHHHHHHHSH
T ss_pred ccccccccc--ccc-cc--cccccccCcchhhc---cccc--cccccccceeeccCccccccccc--HHHHHHHHHHHhc
Confidence 776441111 111 22 69999999998753 2221 11245569999999999999885 7887777655555
Q ss_pred hCCCCCEEEEecccchhh
Q 035988 244 QFPDVPMMALTATATQKV 261 (692)
Q Consensus 244 ~~~~~~~i~lSAT~~~~~ 261 (692)
..++.+++++|||++..+
T Consensus 149 ~~~~~~~i~~SAT~~~~~ 166 (169)
T PF00270_consen 149 RFKNIQIILLSATLPSNV 166 (169)
T ss_dssp TTTTSEEEEEESSSTHHH
T ss_pred CCCCCcEEEEeeCCChhH
Confidence 556789999999999544
No 110
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=7.9e-20 Score=207.99 Aligned_cols=327 Identities=18% Similarity=0.188 Sum_probs=220.0
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHh---cCCeEEEEcccHHHHHHHHHHHHHc--
Q 035988 80 DDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVL---REGIALVVSPLLSLIQDQVMCLAAL-- 154 (692)
Q Consensus 80 ~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~---~~~~~lvi~Pt~~L~~q~~~~l~~~-- 154 (692)
.++-++..|. +|+=.|.+-.+.-++.-|+.|.||.|||+++.+|++. .+..+-|++|+--||.+.++.+..+
T Consensus 72 rEa~~R~lGm---~~ydVQliGg~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~ 148 (913)
T PRK13103 72 REAGKRVMGM---RHFDVQLIGGMTLHEGKIAEMRTGEGKTLVGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLYE 148 (913)
T ss_pred HHHHHHHhCC---CcchhHHHhhhHhccCccccccCCCCChHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHhc
Confidence 3444455674 4444455666666777899999999999999999874 4788999999999999999888764
Q ss_pred --CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHH---hhhhcCCceEEEEeCcccccc---
Q 035988 155 --GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLE---KCHHAGRLSLISIDEAHCCSQ--- 226 (692)
Q Consensus 155 --gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~---~~~~~~~l~~iVIDEaH~l~~--- 226 (692)
|+++.++++..+..++...+ .++|+|+|...+.- ..+.+.+. .......+.++||||+|.++=
T Consensus 149 ~lGl~v~~i~~~~~~~err~~Y--------~~dI~YGT~~e~gF-DYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEA 219 (913)
T PRK13103 149 FLGLSVGIVTPFQPPEEKRAAY--------AADITYGTNNEFGF-DYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEA 219 (913)
T ss_pred ccCCEEEEECCCCCHHHHHHHh--------cCCEEEEccccccc-chhhccceechhhhcccccceeEechhhheecccc
Confidence 99999999988887766555 58999999987621 01111111 111346799999999998641
Q ss_pred --------cCCCchHHHHHHHHHHhhC--------------------CCCCEEE--------------------------
Q 035988 227 --------WGHDFRPDYKNLGILKTQF--------------------PDVPMMA-------------------------- 252 (692)
Q Consensus 227 --------~g~~fr~~~~~l~~l~~~~--------------------~~~~~i~-------------------------- 252 (692)
-.......|..+..+...+ .....+.
T Consensus 220 rtPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly 299 (913)
T PRK13103 220 RTPLIISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLY 299 (913)
T ss_pred CCceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhcc
Confidence 0001111111111111100 0000111
Q ss_pred --------------------------------------------------------------------------------
Q 035988 253 -------------------------------------------------------------------------------- 252 (692)
Q Consensus 253 -------------------------------------------------------------------------------- 252 (692)
T Consensus 300 ~~~~~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~Qn 379 (913)
T PRK13103 300 SAHNLGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQN 379 (913)
T ss_pred ChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHH
Confidence
Q ss_pred ----------EecccchhhHHHHHHHhcccceEEEeccCCCCcceEEEee-ccCcchHHHHHHHHHHHHhCCCCCceEEE
Q 035988 253 ----------LTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVRE-KSSVGKVVIDEIAKYIQESYPNSESGIVY 321 (692)
Q Consensus 253 ----------lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~-~~~~~~~~~~~l~~~l~~~~~~~~~~IIf 321 (692)
||+|+.... ..+.+..+ ..++.-|.++|.+...... .......++..+.+.+...+..+.|+||-
T Consensus 380 fFr~Y~kLsGMTGTa~te~-~Ef~~iY~---l~Vv~IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVG 455 (913)
T PRK13103 380 YFRLYNKLSGMTGTADTEA-FEFRQIYG---LDVVVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVG 455 (913)
T ss_pred HHHhcchhccCCCCCHHHH-HHHHHHhC---CCEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 223322111 11222222 2233345555544322111 11223466788888888777799999999
Q ss_pred EeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCC-------------------
Q 035988 322 CFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKP------------------- 382 (692)
Q Consensus 322 ~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip------------------- 382 (692)
|.|++.++.++..|+..|++..++++.....+-..+.+.-+.| .|.|||+++|||.||.
T Consensus 456 T~SVe~SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa~AG~~G--aVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~ 533 (913)
T PRK13103 456 TATIETSEHMSNLLKKEGIEHKVLNAKYHEKEAEIIAQAGRPG--ALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQ 533 (913)
T ss_pred eCCHHHHHHHHHHHHHcCCcHHHhccccchhHHHHHHcCCCCC--cEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHH
Confidence 9999999999999999999998999987665555555444444 4999999999999994
Q ss_pred ------------------CccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCH
Q 035988 383 ------------------DVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADV 424 (692)
Q Consensus 383 ------------------~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~ 424 (692)
+=-+||-...|.|..-=-|-.|||||.|.||.+-.|++..|-
T Consensus 534 ~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~ 593 (913)
T PRK13103 534 IAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDS 593 (913)
T ss_pred HHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 123699999999999999999999999999999999998773
No 111
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.86 E-value=8.9e-21 Score=203.30 Aligned_cols=306 Identities=17% Similarity=0.258 Sum_probs=207.8
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc------CCe-EEEEcccHHHHHHHHHHHH-HcCCCEEEEe
Q 035988 91 AYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR------EGI-ALVVSPLLSLIQDQVMCLA-ALGIPAHMLT 162 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~------~~~-~lvi~Pt~~L~~q~~~~l~-~~gi~~~~~~ 162 (692)
..+++-.+.+.++-.++-+|+.+.||||||. |+|..+. +++ +=+--|.|--+--+..+.. ..|++...-.
T Consensus 265 PVy~ykdell~av~e~QVLiI~GeTGSGKTT--QiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eV 342 (902)
T KOG0923|consen 265 PVYPYKDELLKAVKEHQVLIIVGETGSGKTT--QIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEV 342 (902)
T ss_pred CchhhHHHHHHHHHhCcEEEEEcCCCCCccc--cccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCccccccc
Confidence 3456667888899899999999999999998 8888754 344 5566688877766665554 4555442211
Q ss_pred cCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHH--HHHHHH
Q 035988 163 STTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPD--YKNLGI 240 (692)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~--~~~l~~ 240 (692)
|-.-. +...- ....-|-|+|-++|.. .| .....+..++.|+|||||.-. ...+ +.-+..
T Consensus 343 GYsIR------FEdcT--SekTvlKYMTDGmLlR--Ef----L~epdLasYSViiiDEAHERT-----L~TDILfgLvKD 403 (902)
T KOG0923|consen 343 GYSIR------FEDCT--SEKTVLKYMTDGMLLR--EF----LSEPDLASYSVIIVDEAHERT-----LHTDILFGLVKD 403 (902)
T ss_pred ceEEE------ecccc--CcceeeeeecchhHHH--HH----hccccccceeEEEeehhhhhh-----hhhhHHHHHHHH
Confidence 11000 00000 1167788999998853 22 334467789999999999721 2222 222344
Q ss_pred HHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEeccCCCCcceEEEeeccCcchHHHHHHHHHHHHhCCCCCceEE
Q 035988 241 LKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIV 320 (692)
Q Consensus 241 l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~~II 320 (692)
+.+..|+..++..|||+... .+..++..-+...+...-.+..++|.-.+........+..+..+... .+.+-+||
T Consensus 404 Iar~RpdLKllIsSAT~DAe---kFS~fFDdapIF~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~t--qp~GDILV 478 (902)
T KOG0923|consen 404 IARFRPDLKLLISSATMDAE---KFSAFFDDAPIFRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLT--QPLGDILV 478 (902)
T ss_pred HHhhCCcceEEeeccccCHH---HHHHhccCCcEEeccCcccceeeecccCCchhHHHHHHhhheeeEec--cCCccEEE
Confidence 55567899999999999864 44555543332222222222334444333322222222222222222 26788999
Q ss_pred EEeccchHHHHHHHHHHC----C-----CceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEEeC
Q 035988 321 YCFSRKECEQVAQELRQR----G-----ISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHS 391 (692)
Q Consensus 321 f~~s~~~~e~l~~~L~~~----g-----~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~ 391 (692)
|..-.+..+...+.|.+. | +-+..+|+.++.+.+..+++---.|..+|++||++++..|.|++|.+||.-+
T Consensus 479 FltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpG 558 (902)
T KOG0923|consen 479 FLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPG 558 (902)
T ss_pred EeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCc
Confidence 999988887777777543 3 3478999999999999999988899999999999999999999999999766
Q ss_pred CC------------------CCHHHHHHHHhhcCCCCCCCeeEeecCCCC
Q 035988 392 LS------------------KSVETYYQESGRAGRDGLPSECLLFFRPAD 423 (692)
Q Consensus 392 ~P------------------~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d 423 (692)
+. -|..+-.||+|||||.| +|.|+-+|+.-.
T Consensus 559 f~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~a 607 (902)
T KOG0923|consen 559 FVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAWA 607 (902)
T ss_pred cccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechhh
Confidence 53 37788999999999997 999999999543
No 112
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.86 E-value=2.1e-19 Score=206.67 Aligned_cols=123 Identities=22% Similarity=0.388 Sum_probs=110.1
Q ss_pred HHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccC
Q 035988 301 IDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGIN 380 (692)
Q Consensus 301 ~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GID 380 (692)
++.+...+......+.++||||+|++.++.+++.|.+.|+++..+||+++..+|..+++.|+.|++.|+|||+++++|+|
T Consensus 432 ~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfd 511 (652)
T PRK05298 432 VDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLD 511 (652)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCcc
Confidence 34455555444347889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEeCC-----CCCHHHHHHHHhhcCCCCCCCeeEeecCCCCH
Q 035988 381 KPDVRFVIHHSL-----SKSVETYYQESGRAGRDGLPSECLLFFRPADV 424 (692)
Q Consensus 381 ip~v~~VI~~~~-----P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~ 424 (692)
+|++++||+++. |.+..+|+||+||+||. ..|.|++|++..+.
T Consensus 512 lp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~ 559 (652)
T PRK05298 512 IPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITD 559 (652)
T ss_pred ccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCH
Confidence 999999999885 78999999999999996 68999999986543
No 113
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.85 E-value=1.6e-19 Score=208.45 Aligned_cols=300 Identities=19% Similarity=0.168 Sum_probs=183.8
Q ss_pred CCCHHHHHHHHHHHc----------CCCEEEEecCCChhHHHHHHHHH-----hcCCeEEEEcccHHHHHHHHHHHHHcC
Q 035988 91 AYRANQQEIINAVLS----------GRDVLVIMAAGGGKSLCYQLPAV-----LREGIALVVSPLLSLIQDQVMCLAALG 155 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~----------g~dviv~apTGsGKTl~~~lpal-----~~~~~~lvi~Pt~~L~~q~~~~l~~~g 155 (692)
-+|++|..|+..+.. .+..++++|||||||++...-+. ...+++|||+|+.+|..|+.+.+..++
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~ 317 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQ 317 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhC
Confidence 378899999988642 24699999999999987654332 235789999999999999999999987
Q ss_pred CCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHH
Q 035988 156 IPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDY 235 (692)
Q Consensus 156 i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~ 235 (692)
..... +..+.. .....+... ...|+|+|.+++.. .+.+.+.....-..-.+||+||||+.. .| .+
T Consensus 318 ~~~~~--~~~s~~---~L~~~l~~~--~~~iivtTiQk~~~--~~~~~~~~~~~~~~~~lvIvDEaHrs~-~~-----~~ 382 (667)
T TIGR00348 318 KDCAE--RIESIA---ELKRLLEKD--DGGIIITTIQKFDK--KLKEEEEKFPVDRKEVVVIFDEAHRSQ-YG-----EL 382 (667)
T ss_pred CCCCc--ccCCHH---HHHHHHhCC--CCCEEEEEhHHhhh--hHhhhhhccCCCCCCEEEEEEcCcccc-ch-----HH
Confidence 53211 111111 122223222 57899999998863 122222211110111389999999843 22 22
Q ss_pred HHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcc-cceEEEe--------ccCCCCcceEEEeeccC-----------
Q 035988 236 KNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHI-RKCIKFV--------STINRPNLFYMVREKSS----------- 295 (692)
Q Consensus 236 ~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~-~~~~~~~--------~~~~r~~l~~~v~~~~~----------- 295 (692)
.. .++..+|+...++|||||-......-...++. ....... ..+-.| +.|.......
T Consensus 383 ~~--~l~~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~-i~Y~~~~~~~~~~~~~l~~~~ 459 (667)
T TIGR00348 383 AK--NLKKALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVK-IDYEDRLPEDHLDRKKLDAFF 459 (667)
T ss_pred HH--HHHhhCCCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeee-EEEEecchhhccChHHHHHHH
Confidence 22 56678899999999999964211111112221 0001110 000001 1111110000
Q ss_pred -----------c-------------------chHHHHHHHHHHHHhC-----CCCCceEEEEeccchHHHHHHHHHHC--
Q 035988 296 -----------V-------------------GKVVIDEIAKYIQESY-----PNSESGIVYCFSRKECEQVAQELRQR-- 338 (692)
Q Consensus 296 -----------~-------------------~~~~~~~l~~~l~~~~-----~~~~~~IIf~~s~~~~e~l~~~L~~~-- 338 (692)
. ....+..+...+.+++ ..+.+++|||.++..|..+++.|.+.
T Consensus 460 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~ 539 (667)
T TIGR00348 460 DEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELN 539 (667)
T ss_pred HHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcc
Confidence 0 0000112222222221 13589999999999999999998765
Q ss_pred ---CCceeEeccCCCHH---------------------HHHHHHHHHhc-CCCcEEEeccccccccCCCCccEEEEeCCC
Q 035988 339 ---GISADYYHADMDIN---------------------AREKVHMRWSK-NKLQVIVGTVAFGMGINKPDVRFVIHHSLS 393 (692)
Q Consensus 339 ---g~~v~~~h~~~~~~---------------------eR~~~~~~f~~-g~~~ILVaT~~~~~GIDip~v~~VI~~~~P 393 (692)
+..+..+++..+.+ ....++++|++ +.++|||.++.+..|+|.|.+.+++...+-
T Consensus 540 ~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKpl 619 (667)
T TIGR00348 540 EKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPL 619 (667)
T ss_pred cccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEeccc
Confidence 24556666654332 22468888976 678999999999999999999999988876
Q ss_pred CCHHHHHHHHhhcCCC
Q 035988 394 KSVETYYQESGRAGRD 409 (692)
Q Consensus 394 ~s~~~y~Qr~GRagR~ 409 (692)
++. .++|.+||+.|.
T Consensus 620 k~h-~LlQai~R~nR~ 634 (667)
T TIGR00348 620 KYH-GLLQAIARTNRI 634 (667)
T ss_pred ccc-HHHHHHHHhccc
Confidence 665 589999999993
No 114
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.85 E-value=2.4e-19 Score=213.29 Aligned_cols=334 Identities=18% Similarity=0.224 Sum_probs=206.8
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHH----HHHcCCCEEEEecCCChhHHHHHHHHHhc---CCeEEEEcccHHHHHHHHHH
Q 035988 78 RADDVRLNVFGIPAYRANQQEIIN----AVLSGRDVLVIMAAGGGKSLCYQLPAVLR---EGIALVVSPLLSLIQDQVMC 150 (692)
Q Consensus 78 ~~~~~l~~~fg~~~~r~~Q~~ai~----~il~g~dviv~apTGsGKTl~~~lpal~~---~~~~lvi~Pt~~L~~q~~~~ 150 (692)
.....+.. .|| .+||.|.++++ ++..++++++.||||+|||++|++|++.. +.+++|.+||++|..|....
T Consensus 234 ~~~~~~~~-~~~-~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~~~~~vvi~t~t~~Lq~Ql~~~ 311 (850)
T TIGR01407 234 LFSKNIDR-LGL-EYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAITEKPVVISTNTKVLQSQLLEK 311 (850)
T ss_pred HHHHhhhh-cCC-ccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHH
Confidence 44444443 588 58999998666 44468999999999999999999999864 56899999999999998652
Q ss_pred -H---HH-cC--CCEEEEecCCChhHHHH--------------------------------------------HHHHHH-
Q 035988 151 -L---AA-LG--IPAHMLTSTTSKEDEKF--------------------------------------------IYKALE- 178 (692)
Q Consensus 151 -l---~~-~g--i~~~~~~~~~~~~~~~~--------------------------------------------~~~~l~- 178 (692)
+ .+ ++ ++++.+.|...--.... .+..+.
T Consensus 312 ~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~~~~~~~i~~ 391 (850)
T TIGR01407 312 DIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGNKMFFAQVRH 391 (850)
T ss_pred HHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcchhhHHHhhc
Confidence 3 32 24 66666665532100000 011111
Q ss_pred --------------------hcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCccccccc-----CCCc--
Q 035988 179 --------------------KGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQW-----GHDF-- 231 (692)
Q Consensus 179 --------------------~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~-----g~~f-- 231 (692)
.....++|||++...|.... ......+.....+||||||++.+. |..+
T Consensus 392 ~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~-----~~~~~ilp~~~~lIiDEAH~L~d~a~~~~~~~ls~ 466 (850)
T TIGR01407 392 DGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRL-----VDNPELFPSFRDLIIDEAHHLPDIAENQLQEELDY 466 (850)
T ss_pred CCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHh-----hcccccCCCCCEEEEECcchHHHHHHHHhcceeCH
Confidence 11235778888888664321 111112345689999999997631 1100
Q ss_pred ---hHH-------------------------------------------------------------HHHH----HHHH-
Q 035988 232 ---RPD-------------------------------------------------------------YKNL----GILK- 242 (692)
Q Consensus 232 ---r~~-------------------------------------------------------------~~~l----~~l~- 242 (692)
... ...+ ..+.
T Consensus 467 ~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~ 546 (850)
T TIGR01407 467 ADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFDLALKD 546 (850)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 000 0000 0000
Q ss_pred -------------------------------------------hhCC-CCCEEEEecccchh-hHHHHHHHhcccceE--
Q 035988 243 -------------------------------------------TQFP-DVPMMALTATATQK-VQNDLMEMLHIRKCI-- 275 (692)
Q Consensus 243 -------------------------------------------~~~~-~~~~i~lSAT~~~~-~~~~i~~~l~~~~~~-- 275 (692)
..++ ..++|++|||++.. -.+.+.+.+|++...
T Consensus 547 ~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~~~~~~ 626 (850)
T TIGR01407 547 DFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLTDVHFN 626 (850)
T ss_pred HHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCCccccc
Confidence 0001 23578999999843 356788889987532
Q ss_pred EE-eccCC-CCcceEEEeecc-----CcchHHHHHHHHHHHHhCC-CCCceEEEEeccchHHHHHHHHHH----CCCcee
Q 035988 276 KF-VSTIN-RPNLFYMVREKS-----SVGKVVIDEIAKYIQESYP-NSESGIVYCFSRKECEQVAQELRQ----RGISAD 343 (692)
Q Consensus 276 ~~-~~~~~-r~~l~~~v~~~~-----~~~~~~~~~l~~~l~~~~~-~~~~~IIf~~s~~~~e~l~~~L~~----~g~~v~ 343 (692)
.+ .++|+ ..+....+.... .......+.+.+.|..... .++++|||++|.+..+.++..|.. .++.
T Consensus 627 ~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~-- 704 (850)
T TIGR01407 627 TIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFEGYE-- 704 (850)
T ss_pred eecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccCce--
Confidence 22 34555 233332222111 1122334444444433221 457899999999999999999976 2333
Q ss_pred EeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCcc--EEEEeCCCC---------------------------
Q 035988 344 YYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVR--FVIHHSLSK--------------------------- 394 (692)
Q Consensus 344 ~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~--~VI~~~~P~--------------------------- 394 (692)
.+..+.+ ..|..+++.|++++..||++|+.|.+|||+|+.. +||..++|.
T Consensus 705 ~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~ 783 (850)
T TIGR01407 705 VLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYV 783 (850)
T ss_pred EEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhh
Confidence 3333333 5789999999999999999999999999999876 477788774
Q ss_pred ---CHHHHHHHHhhcCCCCCCCeeEeecCC
Q 035988 395 ---SVETYYQESGRAGRDGLPSECLLFFRP 421 (692)
Q Consensus 395 ---s~~~y~Qr~GRagR~G~~g~~i~l~~~ 421 (692)
.+..+.|.+||.-|...+.-++++++.
T Consensus 784 lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~ 813 (850)
T TIGR01407 784 LPMAIIRLRQALGRLIRRENDRGSIVILDR 813 (850)
T ss_pred HHHHHHHHHHhhccccccCCceEEEEEEcc
Confidence 123467888999998766434444443
No 115
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.85 E-value=3e-19 Score=200.72 Aligned_cols=290 Identities=17% Similarity=0.306 Sum_probs=210.8
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHH---hcCCeEEEEcccHHHHHHHHHHHHHcC
Q 035988 79 ADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAV---LREGIALVVSPLLSLIQDQVMCLAALG 155 (692)
Q Consensus 79 ~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal---~~~~~~lvi~Pt~~L~~q~~~~l~~~g 155 (692)
..+..++..|+ .|...|+--...++.|+..-++||||.|||.--++.++ ..+.++++|+||..|+.|.++.+.+++
T Consensus 71 ~~~fF~k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~ 149 (1187)
T COG1110 71 FEEFFKKATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFA 149 (1187)
T ss_pred HHHHHHHhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHH
Confidence 45556666788 78999999999999999999999999999975555444 346899999999999999999999873
Q ss_pred -----CCEEE-EecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCC
Q 035988 156 -----IPAHM-LTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGH 229 (692)
Q Consensus 156 -----i~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~ 229 (692)
..+.+ +++..+..++......+.+| +.+|+|+|...|.+ +| +.+.+ -+++++++|.+|.+..-+.
T Consensus 150 e~~~~~~~~~~yh~~l~~~ekee~le~i~~g--dfdIlitTs~FL~k--~~-e~L~~----~kFdfifVDDVDA~Lkask 220 (1187)
T COG1110 150 EDAGSLDVLVVYHSALPTKEKEEALERIESG--DFDILITTSQFLSK--RF-EELSK----LKFDFIFVDDVDAILKASK 220 (1187)
T ss_pred hhcCCcceeeeeccccchHHHHHHHHHHhcC--CccEEEEeHHHHHh--hH-HHhcc----cCCCEEEEccHHHHHhccc
Confidence 33333 67888888888899999988 99999999997753 22 22222 3799999999998764221
Q ss_pred C---------chHH--------------H------HHHHHHH---------hhCCCCCEEEEecccchhh--HHHHHHHh
Q 035988 230 D---------FRPD--------------Y------KNLGILK---------TQFPDVPMMALTATATQKV--QNDLMEML 269 (692)
Q Consensus 230 ~---------fr~~--------------~------~~l~~l~---------~~~~~~~~i~lSAT~~~~~--~~~i~~~l 269 (692)
+ |... + .++.... .......+++.|||..+.- ...+...|
T Consensus 221 NvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLl 300 (1187)
T COG1110 221 NVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELL 300 (1187)
T ss_pred cHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHh
Confidence 1 2111 0 0111110 1122356789999987643 23455666
Q ss_pred cccceEEEeccCCCCcceEEEeeccCcchHHHHHHHHHHHHhCCCCCceEEEEec---cchHHHHHHHHHHCCCceeEec
Q 035988 270 HIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFS---RKECEQVAQELRQRGISADYYH 346 (692)
Q Consensus 270 ~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s---~~~~e~l~~~L~~~g~~v~~~h 346 (692)
++.... ....-.|+.-..... .....+.++++.. +.-+|||++. ++.++++++.|+.+|+++..+|
T Consensus 301 gFevG~---~~~~LRNIvD~y~~~-----~~~e~~~elvk~l---G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~ 369 (1187)
T COG1110 301 GFEVGS---GGEGLRNIVDIYVES-----ESLEKVVELVKKL---GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIH 369 (1187)
T ss_pred CCccCc---cchhhhheeeeeccC-----ccHHHHHHHHHHh---CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEee
Confidence 655321 111222332222221 2345666777653 5689999999 8999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHhcCCCcEEEecc----ccccccCCCC-ccEEEEeCCCC
Q 035988 347 ADMDINAREKVHMRWSKNKLQVIVGTV----AFGMGINKPD-VRFVIHHSLSK 394 (692)
Q Consensus 347 ~~~~~~eR~~~~~~f~~g~~~ILVaT~----~~~~GIDip~-v~~VI~~~~P~ 394 (692)
++ ....++.|..|++++||++. ++-||||+|. ++++|.++.|+
T Consensus 370 a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 370 AE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred cc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCc
Confidence 94 37789999999999999875 6899999996 79999999994
No 116
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=1.2e-18 Score=196.18 Aligned_cols=326 Identities=14% Similarity=0.150 Sum_probs=216.1
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc---CCeEEEEcccHHHHHHHHHHH----
Q 035988 79 ADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR---EGIALVVSPLLSLIQDQVMCL---- 151 (692)
Q Consensus 79 ~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~---~~~~lvi~Pt~~L~~q~~~~l---- 151 (692)
+.++.++.+|. .+++.|.-. .+.-+..-|+.|.||-|||++..+|+.+. +..+-||+..--||.--.+++
T Consensus 67 vREA~~R~lG~-r~ydVQliG--glvLh~G~IAEMkTGEGKTLvAtLpayLnAL~GkgVhVVTvNdYLA~RDae~mg~vy 143 (925)
T PRK12903 67 AREATKRVLGK-RPYDVQIIG--GIILDLGSVAEMKTGEGKTITSIAPVYLNALTGKGVIVSTVNEYLAERDAEEMGKVF 143 (925)
T ss_pred HHHHHHHHhCC-CcCchHHHH--HHHHhcCCeeeecCCCCccHHHHHHHHHHHhcCCceEEEecchhhhhhhHHHHHHHH
Confidence 34555556777 455666544 44334456899999999999999999754 567788888888877544444
Q ss_pred HHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHH---hhhhcCCceEEEEeCcccccc--
Q 035988 152 AALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLE---KCHHAGRLSLISIDEAHCCSQ-- 226 (692)
Q Consensus 152 ~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~---~~~~~~~l~~iVIDEaH~l~~-- 226 (692)
..+|+.+.++.++....++...+ .++|+|+|...+.- ..+.+.+. .......+.+.||||+|.++=
T Consensus 144 ~fLGLsvG~i~~~~~~~~rr~aY--------~~DItYgTn~E~gF-DYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDE 214 (925)
T PRK12903 144 NFLGLSVGINKANMDPNLKREAY--------ACDITYSVHSELGF-DYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDE 214 (925)
T ss_pred HHhCCceeeeCCCCChHHHHHhc--------cCCCeeecCcccch-hhhhhcccccHHHhcCcccceeeeccchheeecc
Confidence 45699999999888777665544 68999999987742 12222221 122346788999999998641
Q ss_pred ---------cCCCchHHHHHHHHHHhhCC--------CCCEEE-------------------------------------
Q 035988 227 ---------WGHDFRPDYKNLGILKTQFP--------DVPMMA------------------------------------- 252 (692)
Q Consensus 227 ---------~g~~fr~~~~~l~~l~~~~~--------~~~~i~------------------------------------- 252 (692)
-+......|.....+...+. ....+.
T Consensus 215 ArTPLIISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~ 294 (925)
T PRK12903 215 AKTPLIISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAH 294 (925)
T ss_pred cCCcccccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHH
Confidence 00001112222222222110 011112
Q ss_pred ------------------------------------------------------------------------Eecccchh
Q 035988 253 ------------------------------------------------------------------------LTATATQK 260 (692)
Q Consensus 253 ------------------------------------------------------------------------lSAT~~~~ 260 (692)
||+|+...
T Consensus 295 ~lf~rd~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te 374 (925)
T PRK12903 295 KVMKEDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTE 374 (925)
T ss_pred HHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHH
Confidence 33333221
Q ss_pred hHHHHHHHhcccceEEEeccCCCCcceEEEeec-cCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCC
Q 035988 261 VQNDLMEMLHIRKCIKFVSTINRPNLFYMVREK-SSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRG 339 (692)
Q Consensus 261 ~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~-~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g 339 (692)
...+.+.. ...++.-|.++|.+....... ......++..+.+.+...+..+.|+||.|.|++.++.++..|.+.|
T Consensus 375 -~~Ef~~iY---~l~Vv~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~g 450 (925)
T PRK12903 375 -EQEFIDIY---NMRVNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEAN 450 (925)
T ss_pred -HHHHHHHh---CCCEEECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCC
Confidence 11122222 222334455666544332211 1123456778888887777789999999999999999999999999
Q ss_pred CceeEeccCCCHHHHHHHHHHHhcCC-CcEEEeccccccccCCCCcc--------EEEEeCCCCCHHHHHHHHhhcCCCC
Q 035988 340 ISADYYHADMDINAREKVHMRWSKNK-LQVIVGTVAFGMGINKPDVR--------FVIHHSLSKSVETYYQESGRAGRDG 410 (692)
Q Consensus 340 ~~v~~~h~~~~~~eR~~~~~~f~~g~-~~ILVaT~~~~~GIDip~v~--------~VI~~~~P~s~~~y~Qr~GRagR~G 410 (692)
++..++++.-...+-..+.+ .|. -.|.|||+++|||.|+.--. +||....|.|..---|-.||+||.|
T Consensus 451 i~h~vLNAk~~e~EA~IIa~---AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQG 527 (925)
T PRK12903 451 IPHTVLNAKQNAREAEIIAK---AGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQG 527 (925)
T ss_pred CCceeecccchhhHHHHHHh---CCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCC
Confidence 99999999865544444433 343 45999999999999997322 7999999999988889999999999
Q ss_pred CCCeeEeecCCCC
Q 035988 411 LPSECLLFFRPAD 423 (692)
Q Consensus 411 ~~g~~i~l~~~~d 423 (692)
.+|.+-.|++..|
T Consensus 528 DpGss~f~lSLeD 540 (925)
T PRK12903 528 DVGESRFFISLDD 540 (925)
T ss_pred CCCcceEEEecch
Confidence 9999999998776
No 117
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.84 E-value=1e-19 Score=207.78 Aligned_cols=479 Identities=17% Similarity=0.151 Sum_probs=289.2
Q ss_pred CCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc--------CCeEEEEcccHHHHHHHHHHHHH-----cCCCE
Q 035988 92 YRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR--------EGIALVVSPLLSLIQDQVMCLAA-----LGIPA 158 (692)
Q Consensus 92 ~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~--------~~~~lvi~Pt~~L~~q~~~~l~~-----~gi~~ 158 (692)
....+.++++++.+++-+++.+.||+|||. |+|.... ...+++--|.|--|--.++++.. .|-.+
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTT--QvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~V 251 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTT--QVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGEEV 251 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchh--hhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCee
Confidence 356788899999999999999999999998 6665432 23566666887666665555543 23233
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHH
Q 035988 159 HMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNL 238 (692)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l 238 (692)
.+-....... .....+++||.+.|. ..+.....+..+..+|+||+|.-+. ..||--.+.+
T Consensus 252 GYqvrl~~~~------------s~~t~L~fcTtGvLL------r~L~~~~~l~~vthiivDEVHER~i-~~DflLi~lk- 311 (924)
T KOG0920|consen 252 GYQVRLESKR------------SRETRLLFCTTGVLL------RRLQSDPTLSGVTHIIVDEVHERSI-NTDFLLILLK- 311 (924)
T ss_pred eEEEeeeccc------------CCceeEEEecHHHHH------HHhccCcccccCceeeeeeEEEccC-CcccHHHHHH-
Confidence 2222111111 115799999999664 3344456778899999999998653 3355555544
Q ss_pred HHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEecc-CCCC-----------------cceEEEee--------
Q 035988 239 GILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVST-INRP-----------------NLFYMVRE-------- 292 (692)
Q Consensus 239 ~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~-~~r~-----------------~l~~~v~~-------- 292 (692)
.+....|+..+|+||||... +.+..+++..+.+.+... +... .-.+....
T Consensus 312 -~lL~~~p~LkvILMSAT~da---e~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (924)
T KOG0920|consen 312 -DLLPRNPDLKVILMSATLDA---ELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLAR 387 (924)
T ss_pred -HHhhhCCCceEEEeeeecch---HHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCcccccc
Confidence 56666799999999999984 455566664433322111 0000 00000000
Q ss_pred ----ccCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHC-------CCceeEeccCCCHHHHHHHHHHH
Q 035988 293 ----KSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQR-------GISADYYHADMDINAREKVHMRW 361 (692)
Q Consensus 293 ----~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~-------g~~v~~~h~~~~~~eR~~~~~~f 361 (692)
...-....+..+..+|.+. +..+.+|||.+...+...+++.|... .+-+..+|+.|+..++..++..-
T Consensus 388 ~~~~~~~id~~Li~~li~~I~~~-~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~p 466 (924)
T KOG0920|consen 388 LKLWEPEIDYDLIEDLIEYIDER-EFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRP 466 (924)
T ss_pred chhccccccHHHHHHHHHhcccC-CCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCC
Confidence 0011234556666666655 36789999999999999999999753 24578999999999999999999
Q ss_pred hcCCCcEEEeccccccccCCCCccEEEEeCCCC------------------CHHHHHHHHhhcCCCCCCCeeEeecCCCC
Q 035988 362 SKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSK------------------SVETYYQESGRAGRDGLPSECLLFFRPAD 423 (692)
Q Consensus 362 ~~g~~~ILVaT~~~~~GIDip~v~~VI~~~~P~------------------s~~~y~Qr~GRagR~G~~g~~i~l~~~~d 423 (692)
-.|..+||+||++++.+|.|+||-+||..+.-+ |..+-.||.|||||. .+|.||-+|+...
T Consensus 467 p~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~ 545 (924)
T KOG0920|consen 467 PKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSR 545 (924)
T ss_pred CCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhh
Confidence 999999999999999999999999999766432 566778999999998 6899999999876
Q ss_pred HHHHHHHHhhhhhhhHhHHHHHHHhcC----CccchHHHHHhhhCCCcccccCCCccchhHHHHHHHHHHHHHHhcCCCc
Q 035988 424 VPRQSSMVFYENSGLQNLYDIVRYSQY----PLHWNIEKVRLVIFEKLQQVNLFCMVVLAGHAQCIISLLQDIQDNNQRL 499 (692)
Q Consensus 424 ~~~~~~l~~~~~~~~~~l~~~~~~~~~----~~~crr~~ll~~f~~~~~~C~~~Cd~d~~~~~~~~~~~~~~~~~~~~~~ 499 (692)
...+..- ..-.+..+. .+.+.|.. ...+-+.++..-.+... .+.-..|...+..+..+.....-.
T Consensus 546 ~~~~~~~--~q~PEilR~-pL~~l~L~iK~l~~~~~~~fLskaldpP~--------~~~v~~a~~~L~~igaL~~~e~LT 614 (924)
T KOG0920|consen 546 YEKLMLA--YQLPEILRT-PLEELCLHIKVLEQGSIKAFLSKALDPPP--------ADAVDLAIERLKQIGALDESEELT 614 (924)
T ss_pred hhhcccc--cCChHHHhC-hHHHhhheeeeccCCCHHHHHHHhcCCCC--------hHHHHHHHHHHHHhccccCcccch
Confidence 5443220 111111000 11111111 11222222222211111 122233444444444333322222
Q ss_pred cHHHHHHHHHhcccCCCcccCHHHHHHHHHHHHHcCccc-------cccccCCCceeEEEEeeccccccccccc-ccccc
Q 035988 500 TMLQLVDKMKIKLKEIDSDLKREEIEQLVLQLIIDRVLV-------RIGPFSPGKKIIKLEISSVQKNTADNKK-STKRS 571 (692)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~l~-------~~~~~L~g~~~v~l~~~~~~~~~~~~~~-~~~~~ 571 (692)
.+++.+..+ ...+. +..|+.-|++. .....|..+.|+.....+.....+.... .....
T Consensus 615 ~LG~~la~l-----Pvd~~---------igK~ll~g~if~cLdp~l~iaa~Ls~k~PF~~~~~~~~~~~~~~~~~~~~~~ 680 (924)
T KOG0920|consen 615 PLGLHLASL-----PVDVR---------IGKLLLFGAIFGCLDPALTIAAALSFKSPFVSPLGKREEADKAKKLLALDSI 680 (924)
T ss_pred HHHHHHHhC-----CCccc---------cchhheehhhccccchhhhHHHHhccCCCcccCCCchhHHHHHHHHhccCCc
Confidence 222222111 12222 33455555552 2233477777887776543332221111 01112
Q ss_pred cchHHHHHHHHHHHHHHHH---HhCCCCceEeccHHHHHHHHHcCCCChhhcchhhhhhc
Q 035988 572 LTSSALEFELDELRKELAS---ISGGILPHSVLSSQLIRLISARKPSTMEEASSNHLEKI 628 (692)
Q Consensus 572 ~~~~~l~~~l~~~r~~~a~---~~~~~~~~~i~~~~~l~~~~~~~p~~~~~~~~~~l~~i 628 (692)
.+.-+++.+-..||.-..+ .+.+.--..-++..+|++|+..+=+..+. |..+
T Consensus 681 SD~la~~~ay~~w~~~~~~~~~~~~~fc~~~fLs~~~l~~i~~l~~q~~~~-----l~~~ 735 (924)
T KOG0920|consen 681 SDHLAVVRAYAGWREILRSGPSAEKDFCEENFLSSNTLQEISSLRVQFLEL-----LSDI 735 (924)
T ss_pred chHHHHHHHHHHHHHHHhccchHHHHHHHHhhccHHHHHHHHHHHHHHHHH-----hhhc
Confidence 3567788888999886655 11122223446889999999998888888 8877
No 118
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.84 E-value=6.1e-20 Score=197.08 Aligned_cols=297 Identities=17% Similarity=0.237 Sum_probs=200.3
Q ss_pred CHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc------CCeEEEEcccHHHHHHHHHHHHH-cCCC----EEE-
Q 035988 93 RANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR------EGIALVVSPLLSLIQDQVMCLAA-LGIP----AHM- 160 (692)
Q Consensus 93 r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~------~~~~lvi~Pt~~L~~q~~~~l~~-~gi~----~~~- 160 (692)
...+.+.+..|-.++-+++++.||||||. |+|..+. .+.+-+--|.|.-+--.++++.. +|.. +.+
T Consensus 358 f~~R~~ll~~ir~n~vvvivgETGSGKTT--Ql~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYs 435 (1042)
T KOG0924|consen 358 FACRDQLLSVIRENQVVVIVGETGSGKTT--QLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYS 435 (1042)
T ss_pred HHHHHHHHHHHhhCcEEEEEecCCCCchh--hhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceE
Confidence 34566777777788889999999999998 6666433 35566667998888777777653 4332 222
Q ss_pred -EecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHH
Q 035988 161 -LTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLG 239 (692)
Q Consensus 161 -~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~ 239 (692)
-..+.+.. ...|-|+|-+.|.. +.+. ...+.+++.||+||||.-+- + ---.+.-+.
T Consensus 436 IRFEdvT~~--------------~T~IkymTDGiLLr-----EsL~-d~~L~kYSviImDEAHERsl-N--tDilfGllk 492 (1042)
T KOG0924|consen 436 IRFEDVTSE--------------DTKIKYMTDGILLR-----ESLK-DRDLDKYSVIIMDEAHERSL-N--TDILFGLLK 492 (1042)
T ss_pred EEeeecCCC--------------ceeEEEeccchHHH-----HHhh-hhhhhheeEEEechhhhccc-c--hHHHHHHHH
Confidence 11122211 67889999997753 2222 22456899999999998431 1 112222334
Q ss_pred HHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEeccCCCCcceEEEeeccCcchHHHHHHHHHH-HHhC-CCCCc
Q 035988 240 ILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYI-QESY-PNSES 317 (692)
Q Consensus 240 ~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~l~~~l-~~~~-~~~~~ 317 (692)
.+.....+..+|..|||+.. +.+..++|.-+...+.+.....++.|. ....++.++..+.-. .-+. ...+-
T Consensus 493 ~~larRrdlKliVtSATm~a---~kf~nfFgn~p~f~IpGRTyPV~~~~~----k~p~eDYVeaavkq~v~Ihl~~~~Gd 565 (1042)
T KOG0924|consen 493 KVLARRRDLKLIVTSATMDA---QKFSNFFGNCPQFTIPGRTYPVEIMYT----KTPVEDYVEAAVKQAVQIHLSGPPGD 565 (1042)
T ss_pred HHHHhhccceEEEeeccccH---HHHHHHhCCCceeeecCCccceEEEec----cCchHHHHHHHHhhheEeeccCCCCC
Confidence 45555668899999999985 456677773332222222222222222 222223333322221 1111 24467
Q ss_pred eEEEEeccchHHHHHHHHHH----C------CCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEE
Q 035988 318 GIVYCFSRKECEQVAQELRQ----R------GISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFV 387 (692)
Q Consensus 318 ~IIf~~s~~~~e~l~~~L~~----~------g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~V 387 (692)
++||..-.+..+..+..++. . ++.+..+++.|+..-+..+++.-..|..+++|||++++..+.+|++++|
T Consensus 566 ilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yV 645 (1042)
T KOG0924|consen 566 ILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYV 645 (1042)
T ss_pred EEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEE
Confidence 89999888776655555543 2 5678999999999999999988888999999999999999999999999
Q ss_pred EEeCC------------------CCCHHHHHHHHhhcCCCCCCCeeEeecCCC
Q 035988 388 IHHSL------------------SKSVETYYQESGRAGRDGLPSECLLFFRPA 422 (692)
Q Consensus 388 I~~~~------------------P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~ 422 (692)
|..+. |-|-.+-.||+|||||.| +|.||-+|+..
T Consensus 646 ID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 646 IDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred EecCceeeeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 97765 347788899999999997 99999999874
No 119
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.81 E-value=3.8e-17 Score=172.63 Aligned_cols=164 Identities=20% Similarity=0.291 Sum_probs=129.7
Q ss_pred CCEEEEecccchhhHHHHHHHhcccceEEEeccCCCCcceEEEeeccCcchHHHHHHHHHHHHhCCCCCceEEEEeccch
Q 035988 248 VPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKE 327 (692)
Q Consensus 248 ~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~ 327 (692)
.+++++||||.+.-.+. -+......+..+..-......+.+.... ++.|...|+.....+++++|-+-|++.
T Consensus 387 ~q~i~VSATPg~~E~e~----s~~~vveQiIRPTGLlDP~ievRp~~~Q----vdDL~~EI~~r~~~~eRvLVTtLTKkm 458 (663)
T COG0556 387 PQTIYVSATPGDYELEQ----SGGNVVEQIIRPTGLLDPEIEVRPTKGQ----VDDLLSEIRKRVAKNERVLVTTLTKKM 458 (663)
T ss_pred CCEEEEECCCChHHHHh----ccCceeEEeecCCCCCCCceeeecCCCc----HHHHHHHHHHHHhcCCeEEEEeehHHH
Confidence 46899999998643221 1111122233344433444556655544 455555555555588999999999999
Q ss_pred HHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEEeCCC-----CCHHHHHHH
Q 035988 328 CEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLS-----KSVETYYQE 402 (692)
Q Consensus 328 ~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~~P-----~s~~~y~Qr 402 (692)
||.|+++|.+.|+++.++|++...-+|.+++.+.+.|.++|||.-+.+-+|+|+|.|.+|..+|.. .|-.+++|-
T Consensus 459 AEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQt 538 (663)
T COG0556 459 AEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQT 538 (663)
T ss_pred HHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999988864 589999999
Q ss_pred HhhcCCCCCCCeeEeecC
Q 035988 403 SGRAGRDGLPSECLLFFR 420 (692)
Q Consensus 403 ~GRagR~G~~g~~i~l~~ 420 (692)
+|||+|. -.|.+++|..
T Consensus 539 IGRAARN-~~GkvIlYAD 555 (663)
T COG0556 539 IGRAARN-VNGKVILYAD 555 (663)
T ss_pred HHHHhhc-cCCeEEEEch
Confidence 9999996 4688888754
No 120
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.81 E-value=6.7e-19 Score=195.35 Aligned_cols=295 Identities=17% Similarity=0.220 Sum_probs=181.8
Q ss_pred CCCCCHHHHHHHHHHHc----C-CCEEEEecCCChhHHHHH--HHHHhc---CCeEEEEcccHHHHHHHHHHHHHcCC--
Q 035988 89 IPAYRANQQEIINAVLS----G-RDVLVIMAAGGGKSLCYQ--LPAVLR---EGIALVVSPLLSLIQDQVMCLAALGI-- 156 (692)
Q Consensus 89 ~~~~r~~Q~~ai~~il~----g-~dviv~apTGsGKTl~~~--lpal~~---~~~~lvi~Pt~~L~~q~~~~l~~~gi-- 156 (692)
-..+|++|..||..+.. | +.++++|.||+|||.+++ +-.|.+ -+++|+++.+++|..|.+..+..+-.
T Consensus 163 ~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~ 242 (875)
T COG4096 163 AIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFG 242 (875)
T ss_pred cccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCc
Confidence 34789999999987653 4 349999999999996543 223333 37999999999999999999988732
Q ss_pred -CEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHH
Q 035988 157 -PAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDY 235 (692)
Q Consensus 157 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~ 235 (692)
....+.+-. +.+.++|.++|...+.....-.+..........+++|||||||+=+ ...+
T Consensus 243 ~~~n~i~~~~--------------~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi------~~~~ 302 (875)
T COG4096 243 TKMNKIEDKK--------------GDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI------YSEW 302 (875)
T ss_pred cceeeeeccc--------------CCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH------Hhhh
Confidence 222222211 1125799999999775321100000112244569999999999822 1111
Q ss_pred HHHHHHHhhCCCCCEEEEecccchhhHHHHHHHh-cccc------------------eEEEeccCCCC------------
Q 035988 236 KNLGILKTQFPDVPMMALTATATQKVQNDLMEML-HIRK------------------CIKFVSTINRP------------ 284 (692)
Q Consensus 236 ~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l-~~~~------------------~~~~~~~~~r~------------ 284 (692)
+ .+...| +.-.+++|||+.......-..++ |.+. .+.+...+.+.
T Consensus 303 ~---~I~dYF-dA~~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek 378 (875)
T COG4096 303 S---SILDYF-DAATQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREK 378 (875)
T ss_pred H---HHHHHH-HHHHHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhh
Confidence 1 222222 22245569998764443333444 2221 11111101000
Q ss_pred ---------cceEEEeec------cCcchHHHHHHHHHHHH--hCCCCCceEEEEeccchHHHHHHHHHHC-----CCce
Q 035988 285 ---------NLFYMVREK------SSVGKVVIDEIAKYIQE--SYPNSESGIVYCFSRKECEQVAQELRQR-----GISA 342 (692)
Q Consensus 285 ---------~l~~~v~~~------~~~~~~~~~~l~~~l~~--~~~~~~~~IIf~~s~~~~e~l~~~L~~~-----g~~v 342 (692)
+..+..... ......+...+.+++.. ....-+++||||.+..+|+.+...|... |--+
T Consensus 379 ~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a 458 (875)
T COG4096 379 LQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYA 458 (875)
T ss_pred hhccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceE
Confidence 011111110 00111223344444443 1112578999999999999999999864 3346
Q ss_pred eEeccCCCHHHHHHHHHHHhcC--CCcEEEeccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCC
Q 035988 343 DYYHADMDINAREKVHMRWSKN--KLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRD 409 (692)
Q Consensus 343 ~~~h~~~~~~eR~~~~~~f~~g--~~~ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~ 409 (692)
..+.|+-. +-...++.|... -.+|.|+.+++..|||+|.|.+++.+..-.|...|.|++||+-|.
T Consensus 459 ~~IT~d~~--~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 459 MKITGDAE--QAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred EEEeccch--hhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 66666543 333445556542 356899999999999999999999999999999999999999985
No 121
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.81 E-value=2.9e-19 Score=188.30 Aligned_cols=324 Identities=17% Similarity=0.136 Sum_probs=223.9
Q ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHH-----hcCCeEEEEcccHHHHHHHHHHHHH-------c-
Q 035988 88 GIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAV-----LREGIALVVSPLLSLIQDQVMCLAA-------L- 154 (692)
Q Consensus 88 g~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal-----~~~~~~lvi~Pt~~L~~q~~~~l~~-------~- 154 (692)
-..++..+|.++|+.+-+|+++++.-.|.+||++||++.+. .+....+++.|+.++++++.+.+.- .
T Consensus 283 ~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~K 362 (1034)
T KOG4150|consen 283 TGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQVVHVEVIKARK 362 (1034)
T ss_pred cccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCCceEEEEEehhhhh
Confidence 44588899999999999999999999999999999997765 2346789999999999987654321 1
Q ss_pred CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccc-cCCCchH
Q 035988 155 GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQ-WGHDFRP 233 (692)
Q Consensus 155 gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~-~g~~fr~ 233 (692)
+--+....+.....+.. +.+. +.+++|+.|.++... .+-+.+.....+-...++++||+|.+.- +|.....
T Consensus 363 ~A~V~~~D~~sE~~~~A-----~~R~--~~~~~~s~~~~~~s~-~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~ 434 (1034)
T KOG4150|consen 363 SAYVEMSDKLSETTKSA-----LKRI--GLNTLYSHQAEAISA-ALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQD 434 (1034)
T ss_pred cceeecccCCCchhHHH-----HHhc--CcceeecCHHHHHHH-HhhhccccccHHHHHHHhcccceeeeecchhhHHHH
Confidence 11112222222222222 2222 789999999987643 2222222222233456799999998752 3333445
Q ss_pred HHHHHHHHHhhC---CCCCEEEEecccchhhHHHHHHHhcccceEEE--eccCCCCcceEEEeec-----cCcchHHHHH
Q 035988 234 DYKNLGILKTQF---PDVPMMALTATATQKVQNDLMEMLHIRKCIKF--VSTINRPNLFYMVREK-----SSVGKVVIDE 303 (692)
Q Consensus 234 ~~~~l~~l~~~~---~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~--~~~~~r~~l~~~v~~~-----~~~~~~~~~~ 303 (692)
.++.|..+...| .+.+++-.+||....++ ...+.+++.....+ ..+.....+.....+. ...+..++.+
T Consensus 435 ~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~-~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E 513 (1034)
T KOG4150|consen 435 QLRALSDLIKGFEASINMGVYDGDTPYKDRTR-LRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVE 513 (1034)
T ss_pred HHHHHHHHHHHHHhhcCcceEeCCCCcCCHHH-HHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHH
Confidence 566666666655 36677878888766543 45566666653322 2233222222222111 1122333444
Q ss_pred HHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHC----C----CceeEeccCCCHHHHHHHHHHHhcCCCcEEEecccc
Q 035988 304 IAKYIQESYPNSESGIVYCFSRKECEQVAQELRQR----G----ISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAF 375 (692)
Q Consensus 304 l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~----g----~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~ 375 (692)
...++.+....+-++|-||.+++-|+.+-..-++. + -.+..|.||.+.++|..+....-.|+..-+|||+++
T Consensus 514 ~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNAL 593 (1034)
T KOG4150|consen 514 VSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNAL 593 (1034)
T ss_pred HHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchh
Confidence 44444444447889999999999999877665542 1 136789999999999999999999999999999999
Q ss_pred ccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecC
Q 035988 376 GMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFR 420 (692)
Q Consensus 376 ~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~ 420 (692)
+.|||+..++.|++.++|.|+.++.|..|||||.++++.++.+..
T Consensus 594 ELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~ 638 (1034)
T KOG4150|consen 594 ELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAF 638 (1034)
T ss_pred hhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEe
Confidence 999999999999999999999999999999999999977765544
No 122
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.80 E-value=4.6e-18 Score=185.56 Aligned_cols=312 Identities=19% Similarity=0.195 Sum_probs=220.6
Q ss_pred CCCHHHHHHHHHHH----cCCCEEEEecCCChhHHHHH--HHHHh----cCCeEEEEcccHHHHHHHHHHHHHc--CCCE
Q 035988 91 AYRANQQEIINAVL----SGRDVLVIMAAGGGKSLCYQ--LPAVL----REGIALVVSPLLSLIQDQVMCLAAL--GIPA 158 (692)
Q Consensus 91 ~~r~~Q~~ai~~il----~g~dviv~apTGsGKTl~~~--lpal~----~~~~~lvi~Pt~~L~~q~~~~l~~~--gi~~ 158 (692)
.+|+||.+-++++. +|-++|+.-..|-|||+-.+ +.-+. ..|.-||++|.-.|-+ |..+++++ ++++
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~N-W~~Ef~rf~P~l~~ 245 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDN-WMNEFKRFTPSLNV 245 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHH-HHHHHHHhCCCcce
Confidence 79999999888876 47789999999999997432 21121 1578999999977765 56777776 6788
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHH
Q 035988 159 HMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNL 238 (692)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l 238 (692)
..++|+. .++....+.+... +..+|+|+|+|+......+ +.+ -.+.++||||||++-... ..|
T Consensus 246 ~~~~Gdk--~eR~~~~r~~~~~-~~fdV~iTsYEi~i~dk~~---lk~----~~W~ylvIDEaHRiKN~~-------s~L 308 (971)
T KOG0385|consen 246 VVYHGDK--EERAALRRDIMLP-GRFDVCITSYEIAIKDKSF---LKK----FNWRYLVIDEAHRIKNEK-------SKL 308 (971)
T ss_pred EEEeCCH--HHHHHHHHHhhcc-CCCceEeehHHHHHhhHHH---Hhc----CCceEEEechhhhhcchh-------hHH
Confidence 8888764 4555555554433 3899999999998754333 332 379999999999976433 344
Q ss_pred HHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEe----------------------------------------
Q 035988 239 GILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFV---------------------------------------- 278 (692)
Q Consensus 239 ~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~---------------------------------------- 278 (692)
....+.|.-...+++|+||-.+....+-..|++-.|.+|.
T Consensus 309 ~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dV 388 (971)
T KOG0385|consen 309 SKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDV 388 (971)
T ss_pred HHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhH
Confidence 4566666666789999999655544444333321111110
Q ss_pred ------------------------------------------------------ccCCCCcceEEEeeccC---------
Q 035988 279 ------------------------------------------------------STINRPNLFYMVREKSS--------- 295 (692)
Q Consensus 279 ------------------------------------------------------~~~~r~~l~~~v~~~~~--------- 295 (692)
...+.|.++....+.+.
T Consensus 389 e~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~ 468 (971)
T KOG0385|consen 389 EKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVT 468 (971)
T ss_pred hhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHh
Confidence 01112222222111000
Q ss_pred --cchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCC---CcEEE
Q 035988 296 --VGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNK---LQVIV 370 (692)
Q Consensus 296 --~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~---~~ILV 370 (692)
.+..+++.|+..+. ..|.++|||..-....+.+-.+..-.++...-+.|.++-++|...++.|.... .-.|+
T Consensus 469 nSGKm~vLDkLL~~Lk---~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlL 545 (971)
T KOG0385|consen 469 NSGKMLVLDKLLPKLK---EQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLL 545 (971)
T ss_pred cCcceehHHHHHHHHH---hCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEE
Confidence 01122333433333 47899999998888888888888888999999999999999999999998754 34789
Q ss_pred eccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEee--cCCCC
Q 035988 371 GTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLF--FRPAD 423 (692)
Q Consensus 371 aT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l--~~~~d 423 (692)
+|.+.|.|||+...++||.||..+++..=.|..-||.|.|+...+.+| ++..-
T Consensus 546 STRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitent 600 (971)
T KOG0385|consen 546 STRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENT 600 (971)
T ss_pred eccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccch
Confidence 999999999999999999999999999999999999999998665554 55443
No 123
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.80 E-value=1.4e-17 Score=195.47 Aligned_cols=324 Identities=17% Similarity=0.200 Sum_probs=198.9
Q ss_pred CCCCCCHHHHHHHHHHH----cCCCEEEEecCCChhHHHHHHHHHhc--CCeEEEEcccHHHHHHHH-HHHHH----cCC
Q 035988 88 GIPAYRANQQEIINAVL----SGRDVLVIMAAGGGKSLCYQLPAVLR--EGIALVVSPLLSLIQDQV-MCLAA----LGI 156 (692)
Q Consensus 88 g~~~~r~~Q~~ai~~il----~g~dviv~apTGsGKTl~~~lpal~~--~~~~lvi~Pt~~L~~q~~-~~l~~----~gi 156 (692)
|| .+|+.|.+...++. .++.+++.|+||+|||++|++|++.. +.+++|.+||++|++|.. +.+.. +++
T Consensus 243 ~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~~~~~vvI~t~T~~Lq~Ql~~~~i~~l~~~~~~ 321 (820)
T PRK07246 243 GL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQSDQRQIIVSVPTKILQDQIMAEEVKAIQEVFHI 321 (820)
T ss_pred CC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHHHHHHhcCC
Confidence 55 79999999655544 47889999999999999999999875 579999999999999995 43433 367
Q ss_pred CEEEEecCCChhHHHH--------------------------------------------HHHHHH--------------
Q 035988 157 PAHMLTSTTSKEDEKF--------------------------------------------IYKALE-------------- 178 (692)
Q Consensus 157 ~~~~~~~~~~~~~~~~--------------------------------------------~~~~l~-------------- 178 (692)
++..+.|+..--.... .|..+.
T Consensus 322 ~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~~cp~~~~ 401 (820)
T PRK07246 322 DCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQSSLFYDY 401 (820)
T ss_pred cEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCCCCCcchh
Confidence 6666655432111100 011111
Q ss_pred -------hcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCccccccc----CCC-c--h---HH-------
Q 035988 179 -------KGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQW----GHD-F--R---PD------- 234 (692)
Q Consensus 179 -------~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~----g~~-f--r---~~------- 234 (692)
.....++|+|++...|.. .+.....+...+.+||||||++.+- +.. + . ..
T Consensus 402 cf~~~ar~~a~~AdivItNHall~~------~~~~~~~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 475 (820)
T PRK07246 402 DFWKRSYEKAKTARLLITNHAYFLT------RVQDDKDFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQKALSG 475 (820)
T ss_pred hHHHHHHHHHHhCCEEEEchHHHHH------HHhhccCCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHHHHHH
Confidence 112356788888775542 1121123467899999999997531 111 0 0 00
Q ss_pred ------------------------------------HHH-------H--------HHH----------------------
Q 035988 235 ------------------------------------YKN-------L--------GIL---------------------- 241 (692)
Q Consensus 235 ------------------------------------~~~-------l--------~~l---------------------- 241 (692)
+.. + ..+
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~~~~~~ 555 (820)
T PRK07246 476 PLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSEKRVTY 555 (820)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCcceeE
Confidence 000 0 000
Q ss_pred -----------HhhCC-CCCEEEEecccchhhHHHHHHHhcccceEEEeccCCCCcceEEEee--ccC----cchHHHHH
Q 035988 242 -----------KTQFP-DVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVRE--KSS----VGKVVIDE 303 (692)
Q Consensus 242 -----------~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~--~~~----~~~~~~~~ 303 (692)
...++ ...+|++|||++-.-...+.+.+|+........++...+....+.. ... ......+.
T Consensus 556 l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~~~~~lGl~~~~~~~~~~~~~~~~~~~i~~~~p~~~~~~~~~~~~~ 635 (820)
T PRK07246 556 LNSASKAFTHFSQLLPETCKTYFVSATLQISPRVSLADLLGFEEYLFHKIEKDKKQDQLVVVDQDMPLVTETSDEVYAEE 635 (820)
T ss_pred EEeeeCcHHHHHHHHhcCCeEEEEecccccCCCCcHHHHcCCCccceecCCCChHHccEEEeCCCCCCCCCCChHHHHHH
Confidence 00011 1356889999962111237888888643332222222221111211 111 12334445
Q ss_pred HHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCC-
Q 035988 304 IAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKP- 382 (692)
Q Consensus 304 l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip- 382 (692)
+.+.|......+++++|+++|.+..+.+++.|....+++ ...|.-. .+..++++|++++-.||++|..|.+|||+|
T Consensus 636 ~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~ 712 (820)
T PRK07246 636 IAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQ 712 (820)
T ss_pred HHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCC
Confidence 555554433367899999999999999999998665555 4444222 256689999998889999999999999997
Q ss_pred -CccEEEEeCCCC------------------------------CHHHHHHHHhhcCCCCCCCeeEeecCC
Q 035988 383 -DVRFVIHHSLSK------------------------------SVETYYQESGRAGRDGLPSECLLFFRP 421 (692)
Q Consensus 383 -~v~~VI~~~~P~------------------------------s~~~y~Qr~GRagR~G~~g~~i~l~~~ 421 (692)
+...||...+|. -+..+.|-+||.-|.-.+--+++++++
T Consensus 713 ~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~ 782 (820)
T PRK07246 713 ADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDR 782 (820)
T ss_pred CCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECC
Confidence 355677777773 134577889999998765334444443
No 124
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.80 E-value=6.2e-17 Score=183.78 Aligned_cols=286 Identities=16% Similarity=0.145 Sum_probs=183.9
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHh---cCCeEEEEcccHHHHHHHHHHHHH--
Q 035988 79 ADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVL---REGIALVVSPLLSLIQDQVMCLAA-- 153 (692)
Q Consensus 79 ~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~---~~~~~lvi~Pt~~L~~q~~~~l~~-- 153 (692)
+.++..+.+|+. +++.|. +..+.-.+.-|+.|.||.|||+++.+|+.+ .+..+.||+++..|+..-.+++..
T Consensus 65 vrEa~~R~lG~r-~ydvQl--ig~l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL~G~~VhVvT~NdyLA~RD~e~m~pvy 141 (870)
T CHL00122 65 TREASFRTLGLR-HFDVQL--IGGLVLNDGKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIY 141 (870)
T ss_pred HHHHHHHHhCCC-CCchHh--hhhHhhcCCccccccCCCCchHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHHHH
Confidence 345555567773 556555 455555778999999999999999999965 367899999999999887776654
Q ss_pred --cCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHH---hhhhcCCceEEEEeCccccccc-
Q 035988 154 --LGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLE---KCHHAGRLSLISIDEAHCCSQW- 227 (692)
Q Consensus 154 --~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~---~~~~~~~l~~iVIDEaH~l~~~- 227 (692)
+|+.+.++.++.+..++...+ .++|+|+|...+.- ..+.+.+. .......+.+.||||||.++=.
T Consensus 142 ~~LGLsvg~i~~~~~~~err~aY--------~~DItYgTn~e~gF-DyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDe 212 (870)
T CHL00122 142 RFLGLTVGLIQEGMSSEERKKNY--------LKDITYVTNSELGF-DYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDE 212 (870)
T ss_pred HHcCCceeeeCCCCChHHHHHhc--------CCCCEecCCccccc-cchhhccCcChHHhhccccceeeeecchhheecc
Confidence 599999998888877665554 68999999986642 12333322 1123466899999999986510
Q ss_pred --------CC--CchHHHHHHHHHHhhCC---------CC----------------------------------------
Q 035988 228 --------GH--DFRPDYKNLGILKTQFP---------DV---------------------------------------- 248 (692)
Q Consensus 228 --------g~--~fr~~~~~l~~l~~~~~---------~~---------------------------------------- 248 (692)
|. .-...|.....+...+. ..
T Consensus 213 ArTPLiISg~~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~ 292 (870)
T CHL00122 213 ARTPLIISGQSKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAK 292 (870)
T ss_pred CCCceeccCCCccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHH
Confidence 00 00111111111111110 00
Q ss_pred --------------------------------------------------------------------CEEEEecccchh
Q 035988 249 --------------------------------------------------------------------PMMALTATATQK 260 (692)
Q Consensus 249 --------------------------------------------------------------------~~i~lSAT~~~~ 260 (692)
.+.+||+|+...
T Consensus 293 ~lf~~d~dYiV~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te 372 (870)
T CHL00122 293 ELFFKNVHYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTE 372 (870)
T ss_pred HHHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHH
Confidence 011234443321
Q ss_pred hHHHHHHHhcccceEEEeccCCCCcceEEEeec-cCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCC
Q 035988 261 VQNDLMEMLHIRKCIKFVSTINRPNLFYMVREK-SSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRG 339 (692)
Q Consensus 261 ~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~-~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g 339 (692)
...+.+..+ ..++.-|.++|......... ......++..+.+.+...+..+.|+||-|.|++..+.++..|...|
T Consensus 373 -~~Ef~~iY~---l~vv~IPtnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~g 448 (870)
T CHL00122 373 -ELEFEKIYN---LEVVCIPTHRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYR 448 (870)
T ss_pred -HHHHHHHhC---CCEEECCCCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcC
Confidence 222222222 22334455666554333211 1223456677777777777799999999999999999999999999
Q ss_pred CceeEeccCC-C-HHHHHHHHHHHhcCCCcEEEeccccccccCCC
Q 035988 340 ISADYYHADM-D-INAREKVHMRWSKNKLQVIVGTVAFGMGINKP 382 (692)
Q Consensus 340 ~~v~~~h~~~-~-~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip 382 (692)
++..++++.- . ..|-..+-+.-+.| .|.|||+++|||.||.
T Consensus 449 i~h~vLNAk~~~~~~EA~IIA~AG~~G--~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 449 LPHQLLNAKPENVRRESEIVAQAGRKG--SITIATNMAGRGTDII 491 (870)
T ss_pred CccceeeCCCccchhHHHHHHhcCCCC--cEEEeccccCCCcCee
Confidence 9999999973 2 45545454444434 4999999999999974
No 125
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=1.3e-18 Score=189.96 Aligned_cols=300 Identities=19% Similarity=0.240 Sum_probs=191.6
Q ss_pred HHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc-----------CCeEEEEcccHHHHHHHHHHHH----HcCCCEEEE-
Q 035988 98 EIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR-----------EGIALVVSPLLSLIQDQVMCLA----ALGIPAHML- 161 (692)
Q Consensus 98 ~ai~~il~g~dviv~apTGsGKTl~~~lpal~~-----------~~~~lvi~Pt~~L~~q~~~~l~----~~gi~~~~~- 161 (692)
++.++|-.+--+|+++.||||||. |+|.++. ++.+=|--|.|--+--+.++.. .+|-.+.+.
T Consensus 263 ~IMEaIn~n~vvIIcGeTGsGKTT--QvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqI 340 (1172)
T KOG0926|consen 263 RIMEAINENPVVIICGETGSGKTT--QVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQI 340 (1172)
T ss_pred HHHHHhhcCCeEEEecCCCCCccc--cchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEE
Confidence 356666667779999999999998 7777643 2455666788876665555443 334344332
Q ss_pred -ecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHH
Q 035988 162 -TSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGI 240 (692)
Q Consensus 162 -~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~ 240 (692)
..+.- .....|.++|-+.|. ..++..+.+..++.|||||||.-+-...-....+.++-.
T Consensus 341 Rfd~ti--------------~e~T~IkFMTDGVLL------rEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~ 400 (1172)
T KOG0926|consen 341 RFDGTI--------------GEDTSIKFMTDGVLL------REIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVP 400 (1172)
T ss_pred Eecccc--------------CCCceeEEecchHHH------HHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHH
Confidence 11111 126789999999654 345566677899999999999854222112222333333
Q ss_pred HHhhCC-------CCCEEEEecccchhhHHHHHHHhcccceEEEe-ccCCCCcceEEEeeccCcchHHHHHHHHHHHHhC
Q 035988 241 LKTQFP-------DVPMMALTATATQKVQNDLMEMLHIRKCIKFV-STINRPNLFYMVREKSSVGKVVIDEIAKYIQESY 312 (692)
Q Consensus 241 l~~~~~-------~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~-~~~~r~~l~~~v~~~~~~~~~~~~~l~~~l~~~~ 312 (692)
++..+. ...+|.||||+--.....-.+.+.+++++.-. .....-.+++.-..........+.....+.+. +
T Consensus 401 LR~k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfPVsIHF~krT~~DYi~eAfrKtc~IH~k-L 479 (1172)
T KOG0926|consen 401 LRQKYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPVSIHFNKRTPDDYIAEAFRKTCKIHKK-L 479 (1172)
T ss_pred HHHHHhhhhcccCceeEEEEeeeEEecccccCceecCCCCceeeeecccCceEEEeccCCCchHHHHHHHHHHHHhhc-C
Confidence 443322 34569999998654333333445555443221 11111122222222222222233333333333 3
Q ss_pred CCCCceEEEEeccchHHHHHHHHHHC-----C-C----------------------------------------------
Q 035988 313 PNSESGIVYCFSRKECEQVAQELRQR-----G-I---------------------------------------------- 340 (692)
Q Consensus 313 ~~~~~~IIf~~s~~~~e~l~~~L~~~-----g-~---------------------------------------------- 340 (692)
+.+.+|||+.-..+++++++.|++. + .
T Consensus 480 -P~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~ 558 (1172)
T KOG0926|consen 480 -PPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVD 558 (1172)
T ss_pred -CCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhc
Confidence 7888999999999999999999753 0 0
Q ss_pred -----------------------------------------------ceeEeccCCCHHHHHHHHHHHhcCCCcEEEecc
Q 035988 341 -----------------------------------------------SADYYHADMDINAREKVHMRWSKNKLQVIVGTV 373 (692)
Q Consensus 341 -----------------------------------------------~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~ 373 (692)
-|..+++-++.+.+.++++.--.|..-++|||+
T Consensus 559 ~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTN 638 (1172)
T KOG0926|consen 559 SGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATN 638 (1172)
T ss_pred ccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEecc
Confidence 012344456777777777777778888999999
Q ss_pred ccccccCCCCccEEEEeCCCC------------------CHHHHHHHHhhcCCCCCCCeeEeecCCC
Q 035988 374 AFGMGINKPDVRFVIHHSLSK------------------SVETYYQESGRAGRDGLPSECLLFFRPA 422 (692)
Q Consensus 374 ~~~~GIDip~v~~VI~~~~P~------------------s~~~y~Qr~GRagR~G~~g~~i~l~~~~ 422 (692)
+++..+.||++++||..+.-+ |-.+--||+|||||.| +|+||-+|+..
T Consensus 639 VAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 639 VAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred chhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhH
Confidence 999999999999999877543 5566689999999997 89999999864
No 126
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.77 E-value=3.4e-17 Score=173.36 Aligned_cols=280 Identities=20% Similarity=0.234 Sum_probs=194.3
Q ss_pred CCEEEEecCCChhHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccE
Q 035988 107 RDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKM 186 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~lpal~~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I 186 (692)
+-++-++||.||||.-++ --+......++..|+|.||.++++++.+.|+++..++|....... . + ...+..
T Consensus 192 kIi~H~GPTNSGKTy~AL-qrl~~aksGvycGPLrLLA~EV~~r~na~gipCdL~TGeE~~~~~----~---~-~~~a~h 262 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYRAL-QRLKSAKSGVYCGPLRLLAHEVYDRLNALGIPCDLLTGEERRFVL----D---N-GNPAQH 262 (700)
T ss_pred eEEEEeCCCCCchhHHHH-HHHhhhccceecchHHHHHHHHHHHhhhcCCCccccccceeeecC----C---C-CCcccc
Confidence 457889999999998653 244556789999999999999999999999999999886433211 0 1 125788
Q ss_pred EEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccc--cCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHH
Q 035988 187 LYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQ--WGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQND 264 (692)
Q Consensus 187 li~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~--~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~ 264 (692)
+=||-|+.... ..++..||||.+.|.+ .|..+...+.-+ .... +.+ - -.+.+...
T Consensus 263 vScTVEM~sv~-------------~~yeVAViDEIQmm~Dp~RGwAWTrALLGl--~AdE-----iHL-C--Gepsvldl 319 (700)
T KOG0953|consen 263 VSCTVEMVSVN-------------TPYEVAVIDEIQMMRDPSRGWAWTRALLGL--AADE-----IHL-C--GEPSVLDL 319 (700)
T ss_pred eEEEEEEeecC-------------CceEEEEehhHHhhcCcccchHHHHHHHhh--hhhh-----hhc-c--CCchHHHH
Confidence 89999987532 3589999999999975 332222222221 1111 001 1 12345566
Q ss_pred HHHHhcccceEEEeccCCCCcceEEEeeccCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCc-ee
Q 035988 265 LMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGIS-AD 343 (692)
Q Consensus 265 i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~-v~ 343 (692)
+.+.+......+....+.|-+.. ...+.+..-+... .+|. -|.|.|++..-.+...+.+.|.. +.
T Consensus 320 V~~i~k~TGd~vev~~YeRl~pL-----------~v~~~~~~sl~nl-k~GD--CvV~FSkk~I~~~k~kIE~~g~~k~a 385 (700)
T KOG0953|consen 320 VRKILKMTGDDVEVREYERLSPL-----------VVEETALGSLSNL-KPGD--CVVAFSKKDIFTVKKKIEKAGNHKCA 385 (700)
T ss_pred HHHHHhhcCCeeEEEeecccCcc-----------eehhhhhhhhccC-CCCC--eEEEeehhhHHHHHHHHHHhcCcceE
Confidence 66655544332222222222111 0011222222211 1333 46678899999999999988776 99
Q ss_pred EeccCCCHHHHHHHHHHHhc--CCCcEEEeccccccccCCCCccEEEEeCCCC---------CHHHHHHHHhhcCCCCCC
Q 035988 344 YYHADMDINAREKVHMRWSK--NKLQVIVGTVAFGMGINKPDVRFVIHHSLSK---------SVETYYQESGRAGRDGLP 412 (692)
Q Consensus 344 ~~h~~~~~~eR~~~~~~f~~--g~~~ILVaT~~~~~GIDip~v~~VI~~~~P~---------s~~~y~Qr~GRagR~G~~ 412 (692)
+++|+++++.|......|.+ ++.+|||||+++|||+|+ +++-||.+++-+ +..+..|.+|||||.|..
T Consensus 386 VIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~ 464 (700)
T KOG0953|consen 386 VIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSK 464 (700)
T ss_pred EEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccC
Confidence 99999999999999999987 889999999999999999 688899888753 678899999999999865
Q ss_pred ---CeeEeecCCCCHHHHHHHHhhh
Q 035988 413 ---SECLLFFRPADVPRQSSMVFYE 434 (692)
Q Consensus 413 ---g~~i~l~~~~d~~~~~~l~~~~ 434 (692)
|.+..+. ..|+..+...+...
T Consensus 465 ~~~G~vTtl~-~eDL~~L~~~l~~p 488 (700)
T KOG0953|consen 465 YPQGEVTTLH-SEDLKLLKRILKRP 488 (700)
T ss_pred CcCceEEEee-HhhHHHHHHHHhCC
Confidence 6666655 56788888877643
No 127
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.76 E-value=4.7e-16 Score=176.26 Aligned_cols=285 Identities=18% Similarity=0.187 Sum_probs=182.3
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHh---cCCeEEEEcccHHHHHHHHHHHH----
Q 035988 80 DDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVL---REGIALVVSPLLSLIQDQVMCLA---- 152 (692)
Q Consensus 80 ~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~---~~~~~lvi~Pt~~L~~q~~~~l~---- 152 (692)
.++.++.+|. +|+=.|.+-.+.-++.-|+.|.||-|||+++.+|+.+ .+..+-||++.--||..-.+++.
T Consensus 75 REa~~R~lG~---r~ydVQliGgl~Lh~G~IAEM~TGEGKTL~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~vy~ 151 (939)
T PRK12902 75 REASKRVLGM---RHFDVQLIGGMVLHEGQIAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQVHR 151 (939)
T ss_pred HHHHHHHhCC---CcchhHHHhhhhhcCCceeeecCCCChhHHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHHH
Confidence 3444455675 4444555666666777899999999999999999986 46789999999999887666655
Q ss_pred HcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHh---hhhcCCceEEEEeCcccccc---
Q 035988 153 ALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEK---CHHAGRLSLISIDEAHCCSQ--- 226 (692)
Q Consensus 153 ~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~---~~~~~~l~~iVIDEaH~l~~--- 226 (692)
.+|+.+.++.++.+..++...+ .+||+|+|+..+.- ..+.+.+.. ......+.+.||||||.++=
T Consensus 152 ~LGLtvg~i~~~~~~~err~aY--------~~DItYgTn~e~gF-DYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEA 222 (939)
T PRK12902 152 FLGLSVGLIQQDMSPEERKKNY--------ACDITYATNSELGF-DYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEA 222 (939)
T ss_pred HhCCeEEEECCCCChHHHHHhc--------CCCeEEecCCcccc-cchhhhhcccccccccCccceEEEecccceeeccC
Confidence 4599999998888777665544 79999999998742 233344332 12346789999999998641
Q ss_pred ------cC--CCchHHHHHHHHHHhhCC---------------CCCEEE-------------------------------
Q 035988 227 ------WG--HDFRPDYKNLGILKTQFP---------------DVPMMA------------------------------- 252 (692)
Q Consensus 227 ------~g--~~fr~~~~~l~~l~~~~~---------------~~~~i~------------------------------- 252 (692)
-| ..-...|.....+...+. ....+.
T Consensus 223 rTPLIISg~~~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~ 302 (939)
T PRK12902 223 RTPLIISGQVERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFN 302 (939)
T ss_pred CCcccccCCCccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHH
Confidence 01 011112222111111110 111222
Q ss_pred -----------------------------------------------------------------------------Eec
Q 035988 253 -----------------------------------------------------------------------------LTA 255 (692)
Q Consensus 253 -----------------------------------------------------------------------------lSA 255 (692)
||+
T Consensus 303 AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTG 382 (939)
T PRK12902 303 ALKAKELFIKDVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTG 382 (939)
T ss_pred HHHHHHHHhcCCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCC
Confidence 233
Q ss_pred ccchhhHHHHHHHhcccceEEEeccCCCCcceEEEeec-cCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHH
Q 035988 256 TATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREK-SSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQE 334 (692)
Q Consensus 256 T~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~-~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~ 334 (692)
|+... ...+.+.. +..++.-|.++|......... ......++..+.+.+...+..+.|+||-|.|++..+.++..
T Consensus 383 Ta~te-~~Ef~~iY---~l~Vv~IPTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~ 458 (939)
T PRK12902 383 TAKTE-EVEFEKTY---KLEVTVIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSAL 458 (939)
T ss_pred CCHHH-HHHHHHHh---CCcEEEcCCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHH
Confidence 32211 11122221 122333455555443322211 11224567778888877777999999999999999999999
Q ss_pred HHHCCCceeEeccC-CC-HHHHHHHHHHHhcCCCcEEEeccccccccCCC
Q 035988 335 LRQRGISADYYHAD-MD-INAREKVHMRWSKNKLQVIVGTVAFGMGINKP 382 (692)
Q Consensus 335 L~~~g~~v~~~h~~-~~-~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip 382 (692)
|...|++..++++. .. ..+-..+.+.-+.| .|.|||+++|||-||.
T Consensus 459 L~~~gi~h~vLNAk~~~~~~EA~IIa~AG~~G--aVTIATNMAGRGTDIk 506 (939)
T PRK12902 459 LQEQGIPHNLLNAKPENVEREAEIVAQAGRKG--AVTIATNMAGRGTDII 506 (939)
T ss_pred HHHcCCchheeeCCCcchHhHHHHHHhcCCCC--cEEEeccCCCCCcCEe
Confidence 99999999999997 33 44444444433334 4999999999999874
No 128
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.75 E-value=1.6e-17 Score=184.98 Aligned_cols=153 Identities=19% Similarity=0.257 Sum_probs=101.6
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEecCCChhHHH--HHHHHHhc---CCeEEEEcccHHHHHHHHHHHHHc-CC----CEEE
Q 035988 91 AYRANQQEIINAVLSGRDVLVIMAAGGGKSLC--YQLPAVLR---EGIALVVSPLLSLIQDQVMCLAAL-GI----PAHM 160 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~--~~lpal~~---~~~~lvi~Pt~~L~~q~~~~l~~~-gi----~~~~ 160 (692)
.|..||.+....+-.+..++++|||.+|||.+ |.+-.+++ .+.+|+++|+.+|++|....+... .- +...
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~s 590 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGVS 590 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccchh
Confidence 56789999999999999999999999999975 33444544 489999999999999988766543 11 1112
Q ss_pred EecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHH
Q 035988 161 LTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGI 240 (692)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~ 240 (692)
+.|..+.+ .....-.|+|+|+-|+.+.. .+........+..++.++|+||+|++..... ..... .
T Consensus 591 l~g~ltqE--------Ysinp~nCQVLITvPecles--lLlspp~~q~~cerIRyiIfDEVH~iG~~ed----~l~~E-q 655 (1330)
T KOG0949|consen 591 LLGDLTQE--------YSINPWNCQVLITVPECLES--LLLSPPHHQKFCERIRYIIFDEVHLIGNEED----GLLWE-Q 655 (1330)
T ss_pred hHhhhhHH--------hcCCchhceEEEEchHHHHH--HhcCchhhhhhhhcceEEEechhhhcccccc----chHHH-H
Confidence 22222221 11112279999999998753 2222112233557899999999999865331 11111 1
Q ss_pred HHhhCCCCCEEEEecccch
Q 035988 241 LKTQFPDVPMMALTATATQ 259 (692)
Q Consensus 241 l~~~~~~~~~i~lSAT~~~ 259 (692)
+. ..-.+|++++|||..+
T Consensus 656 ll-~li~CP~L~LSATigN 673 (1330)
T KOG0949|consen 656 LL-LLIPCPFLVLSATIGN 673 (1330)
T ss_pred HH-HhcCCCeeEEecccCC
Confidence 11 1236899999999854
No 129
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.73 E-value=3.9e-17 Score=149.59 Aligned_cols=120 Identities=28% Similarity=0.480 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccc
Q 035988 299 VVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMG 378 (692)
Q Consensus 299 ~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~G 378 (692)
.+...+.+++......++++||||++...++.+++.|.+.+.++..+||+++..+|..+++.|.++...||++|.++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 45667777777664468899999999999999999999989999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEee
Q 035988 379 INKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLF 418 (692)
Q Consensus 379 IDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l 418 (692)
+|+|++++||+++.|.+...|.|++||++|.|+.|.|+++
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999998888764
No 130
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.72 E-value=2.4e-15 Score=172.11 Aligned_cols=124 Identities=21% Similarity=0.198 Sum_probs=109.1
Q ss_pred hHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEecccccc
Q 035988 298 KVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGM 377 (692)
Q Consensus 298 ~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~ 377 (692)
..++..+++.+...+..+.|+||-|.|++..+.++..|+..|++..++++.....+-..+.+.-+.|. |.|||+++||
T Consensus 611 ~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~Ga--VTIATNMAGR 688 (1112)
T PRK12901 611 REKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQPGT--VTIATNMAGR 688 (1112)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCCCc--EEEeccCcCC
Confidence 45677888888877779999999999999999999999999999999999877777766666655555 8999999999
Q ss_pred ccCCC--------CccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCC
Q 035988 378 GINKP--------DVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPAD 423 (692)
Q Consensus 378 GIDip--------~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d 423 (692)
|.||. +=-+||....|.|..---|-.||+||.|.||.+-.|++..|
T Consensus 689 GTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLED 742 (1112)
T PRK12901 689 GTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLED 742 (1112)
T ss_pred CcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEccc
Confidence 99997 33479999999999999999999999999999999999876
No 131
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.72 E-value=3.5e-15 Score=178.49 Aligned_cols=173 Identities=16% Similarity=0.186 Sum_probs=113.3
Q ss_pred CEEEEecccchh-hHHHHHHHhcccc----eEEEeccCCCCcc-eEEEee-cc----CcchHHHHHHHHHHHHhC-CCCC
Q 035988 249 PMMALTATATQK-VQNDLMEMLHIRK----CIKFVSTINRPNL-FYMVRE-KS----SVGKVVIDEIAKYIQESY-PNSE 316 (692)
Q Consensus 249 ~~i~lSAT~~~~-~~~~i~~~l~~~~----~~~~~~~~~r~~l-~~~v~~-~~----~~~~~~~~~l~~~l~~~~-~~~~ 316 (692)
++|++|||++.. -.+.+.+.+|+.. ...+.++|+-.+. ...+.. .. .........+.+.|.... ..++
T Consensus 674 ~~iltSATL~~~~~f~~~~~~lGl~~~~~~~~~~~SpF~~~~q~~l~vp~d~p~~~~~~~~~~~~~la~~i~~l~~~~~g 753 (928)
T PRK08074 674 SVILTSATLTVNGSFDYIIERLGLEDFYPRTLQIPSPFSYEEQAKLMIPTDMPPIKDVPIEEYIEEVAAYIAKIAKATKG 753 (928)
T ss_pred cEEEEeeecccCCCcHHHHHhcCCCCCCccEEEeCCCCCHHHhcEEEeecCCCCCCCCChHHHHHHHHHHHHHHHHhCCC
Confidence 467889998743 2456677888864 3445566664322 222221 11 111333445555544322 1567
Q ss_pred ceEEEEeccchHHHHHHHHHHCCC--ceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCc--cEEEEeCC
Q 035988 317 SGIVYCFSRKECEQVAQELRQRGI--SADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDV--RFVIHHSL 392 (692)
Q Consensus 317 ~~IIf~~s~~~~e~l~~~L~~~g~--~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v--~~VI~~~~ 392 (692)
+++|+++|.+..+.+++.|..... ....+.-+++...|..+++.|+.++-.||++|..|.+|||+|+- ++||...+
T Consensus 754 ~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI~kL 833 (928)
T PRK08074 754 RMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVIVRL 833 (928)
T ss_pred CEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEEecC
Confidence 999999999999999999986422 12233334544568899999999888899999999999999975 77888887
Q ss_pred CC------------------------------CHHHHHHHHhhcCCCCCCCeeEeecCC
Q 035988 393 SK------------------------------SVETYYQESGRAGRDGLPSECLLFFRP 421 (692)
Q Consensus 393 P~------------------------------s~~~y~Qr~GRagR~G~~g~~i~l~~~ 421 (692)
|. -+..+.|.+||.-|...+--++++++.
T Consensus 834 PF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~ 892 (928)
T PRK08074 834 PFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDR 892 (928)
T ss_pred CCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecC
Confidence 74 123457888999988766334444443
No 132
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.71 E-value=7.9e-17 Score=183.83 Aligned_cols=321 Identities=19% Similarity=0.163 Sum_probs=224.7
Q ss_pred CCCCHHHHHHHHHHH----cCCCEEEEecCCChhHH---HHHHHH---HhcCCeEEEEcccHHHHHHHHHHHHHcCCCEE
Q 035988 90 PAYRANQQEIINAVL----SGRDVLVIMAAGGGKSL---CYQLPA---VLREGIALVVSPLLSLIQDQVMCLAALGIPAH 159 (692)
Q Consensus 90 ~~~r~~Q~~ai~~il----~g~dviv~apTGsGKTl---~~~lpa---l~~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~ 159 (692)
..+|.||.+-++.++ .+.++|+.-..|-|||+ +|+--+ ....|..|||+|+-.+..++-+--....+++.
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~~W~~ef~~w~~mn~i 448 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTITAWEREFETWTDMNVI 448 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhHHHHHHHHHHhhhcee
Confidence 489999999988876 57899999999999994 333222 22357899999998887776655555688899
Q ss_pred EEecCCChhHHHHHHHHHHhc---CCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHH
Q 035988 160 MLTSTTSKEDEKFIYKALEKG---EGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYK 236 (692)
Q Consensus 160 ~~~~~~~~~~~~~~~~~l~~~---~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~ 236 (692)
+++|.....+....+.-.... .-.++++++|++.+.....++.. -.+.+++|||||++-... .
T Consensus 449 ~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~L~~-------i~w~~~~vDeahrLkN~~-------~ 514 (1373)
T KOG0384|consen 449 VYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAELSK-------IPWRYLLVDEAHRLKNDE-------S 514 (1373)
T ss_pred eeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhhhcc-------CCcceeeecHHhhcCchH-------H
Confidence 999988776555554433332 12589999999998765444332 268899999999976322 2
Q ss_pred HHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEec------cC-----------------------------
Q 035988 237 NLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVS------TI----------------------------- 281 (692)
Q Consensus 237 ~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~------~~----------------------------- 281 (692)
.|......|.--..+++|+||-.+....+...+++..|..|.. .+
T Consensus 515 ~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvek 594 (1373)
T KOG0384|consen 515 KLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEK 594 (1373)
T ss_pred HHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhcc
Confidence 2222344444445789999997766666665554322211110 00
Q ss_pred ---------------------------------------CCCcc-------------eEEEeeccCcchHHH------HH
Q 035988 282 ---------------------------------------NRPNL-------------FYMVREKSSVGKVVI------DE 303 (692)
Q Consensus 282 ---------------------------------------~r~~l-------------~~~v~~~~~~~~~~~------~~ 303 (692)
..+++ .|.+......-.... ..
T Consensus 595 slp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~ 674 (1373)
T KOG0384|consen 595 SLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEA 674 (1373)
T ss_pred CCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHH
Confidence 00000 011100000000000 01
Q ss_pred HHHHH-------------HHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcC---CCc
Q 035988 304 IAKYI-------------QESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKN---KLQ 367 (692)
Q Consensus 304 l~~~l-------------~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g---~~~ 367 (692)
+..+| -..-..|.++|||.+-+...+.|+++|...+++..-+.|.+..+-|...++.|... ...
T Consensus 675 L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFv 754 (1373)
T KOG0384|consen 675 LQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFV 754 (1373)
T ss_pred HHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceE
Confidence 11121 11223679999999999999999999999999999999999999999999999863 466
Q ss_pred EEEeccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCe--eEeecCCCCH
Q 035988 368 VIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSE--CLLFFRPADV 424 (692)
Q Consensus 368 ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~--~i~l~~~~d~ 424 (692)
.|+||-|.|.|||+...+.||.||.-+++.+=+|...||.|.|+... +|-|++.+-+
T Consensus 755 FLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~Tv 813 (1373)
T KOG0384|consen 755 FLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTV 813 (1373)
T ss_pred EEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCch
Confidence 89999999999999999999999999999999999999999999854 4666776554
No 133
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.70 E-value=1e-15 Score=159.58 Aligned_cols=323 Identities=15% Similarity=0.216 Sum_probs=202.9
Q ss_pred ccccccCCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHh------cCCeEEEEcc
Q 035988 66 VENWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVL------REGIALVVSP 139 (692)
Q Consensus 66 ~~~w~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~------~~~~~lvi~P 139 (692)
+..|. ..++++.-.+.++++-.++ ....+.+-...+.+++-+++++.||||||. |+|... ..+.+...-|
T Consensus 24 ~Npf~-~~p~s~rY~~ilk~R~~LP-vw~~k~~F~~~l~~nQ~~v~vGetgsGKtt--QiPq~~~~~~~~~~~~v~CTQp 99 (699)
T KOG0925|consen 24 INPFN-GKPYSQRYYDILKKRRELP-VWEQKEEFLKLLLNNQIIVLVGETGSGKTT--QIPQFVLEYELSHLTGVACTQP 99 (699)
T ss_pred cCCCC-CCcCcHHHHHHHHHHhcCc-hHHhHHHHHHHHhcCceEEEEecCCCCccc--cCcHHHHHHHHhhccceeecCc
Confidence 44454 6788899899998774442 223445566667778899999999999996 555432 2245556668
Q ss_pred cHHHHHHHHHHHHH-cCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEE
Q 035988 140 LLSLIQDQVMCLAA-LGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISI 218 (692)
Q Consensus 140 t~~L~~q~~~~l~~-~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVI 218 (692)
.|--+-+...+... ..+..+.-.|..-.-+ +.. .++.-+-|+|-++|.. ...+...+.+++.||+
T Consensus 100 rrvaamsva~RVadEMDv~lG~EVGysIrfE------dC~--~~~T~Lky~tDgmLlr------Eams~p~l~~y~viiL 165 (699)
T KOG0925|consen 100 RRVAAMSVAQRVADEMDVTLGEEVGYSIRFE------DCT--SPNTLLKYCTDGMLLR------EAMSDPLLGRYGVIIL 165 (699)
T ss_pred hHHHHHHHHHHHHHHhccccchhcccccccc------ccC--ChhHHHHHhcchHHHH------HHhhCcccccccEEEe
Confidence 88777776666543 3333222111110000 000 0012233667676642 1223345678999999
Q ss_pred eCcccccccCCCchHHH--HHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEeccCCCCcceEEEeeccCc
Q 035988 219 DEAHCCSQWGHDFRPDY--KNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSV 296 (692)
Q Consensus 219 DEaH~l~~~g~~fr~~~--~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~~~ 296 (692)
||||.-+ ...++ .-|..+....|+..++.+|||+.. ..+..+++..+.+.+.+ .....++|........
T Consensus 166 DeahERt-----lATDiLmGllk~v~~~rpdLk~vvmSatl~a---~Kfq~yf~n~Pll~vpg-~~PvEi~Yt~e~erDy 236 (699)
T KOG0925|consen 166 DEAHERT-----LATDILMGLLKEVVRNRPDLKLVVMSATLDA---EKFQRYFGNAPLLAVPG-THPVEIFYTPEPERDY 236 (699)
T ss_pred chhhhhh-----HHHHHHHHHHHHHHhhCCCceEEEeecccch---HHHHHHhCCCCeeecCC-CCceEEEecCCCChhH
Confidence 9999732 22222 223455556689999999999975 45667777665554444 2222333333222222
Q ss_pred chHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHC---------CCceeEeccCCCHHHHHHHHHHHh---cC
Q 035988 297 GKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQR---------GISADYYHADMDINAREKVHMRWS---KN 364 (692)
Q Consensus 297 ~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~---------g~~v~~~h~~~~~~eR~~~~~~f~---~g 364 (692)
.+..+..++++.... ..+-++||....++.+..++.+... ..++..+| +.+...+++--. +|
T Consensus 237 lEaairtV~qih~~e--e~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~ 310 (699)
T KOG0925|consen 237 LEAAIRTVLQIHMCE--EPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNG 310 (699)
T ss_pred HHHHHHHHHHHHhcc--CCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCC
Confidence 223333344433322 5678899999999999888888743 24566777 444444433322 12
Q ss_pred --CCcEEEeccccccccCCCCccEEEEeCC------------------CCCHHHHHHHHhhcCCCCCCCeeEeecCCC
Q 035988 365 --KLQVIVGTVAFGMGINKPDVRFVIHHSL------------------SKSVETYYQESGRAGRDGLPSECLLFFRPA 422 (692)
Q Consensus 365 --~~~ILVaT~~~~~GIDip~v~~VI~~~~------------------P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~ 422 (692)
..+|+|+|++++..+-+++|.+||.-++ |-|..+-.||.|||||. .+|.|+.+|+..
T Consensus 311 ~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 311 AYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred CccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 3579999999999999999999998775 34788899999999997 699999999864
No 134
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.70 E-value=5.8e-17 Score=134.83 Aligned_cols=78 Identities=33% Similarity=0.552 Sum_probs=75.7
Q ss_pred HHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCC
Q 035988 333 QELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDG 410 (692)
Q Consensus 333 ~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G 410 (692)
+.|+..++.+..+||++++++|..+++.|.+++..|||||+++++|||+|++++||++++|.|+..|.|++||+||.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 367889999999999999999999999999999999999999999999999999999999999999999999999987
No 135
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.68 E-value=1.4e-14 Score=163.38 Aligned_cols=159 Identities=13% Similarity=0.009 Sum_probs=108.6
Q ss_pred CEEEEecccchhh------HHHHHHHhcccce-EEEeccCC----CCc--ceEEEee------ccC--------------
Q 035988 249 PMMALTATATQKV------QNDLMEMLHIRKC-IKFVSTIN----RPN--LFYMVRE------KSS-------------- 295 (692)
Q Consensus 249 ~~i~lSAT~~~~~------~~~i~~~l~~~~~-~~~~~~~~----r~~--l~~~v~~------~~~-------------- 295 (692)
++|+.|||++..- .+.+.+.+|++.. ..+.++|+ +.. +.|.... ...
T Consensus 373 ~~I~TSATL~v~~~~~~~~F~~f~~~lGL~~~~l~~~SPFd~~y~~qa~~~LyvP~~~~~~lP~p~~~~~~~~~~~~~~~ 452 (636)
T TIGR03117 373 GAIIVSATLYLPDRFGQMSCDYLKRVLSLPLSRLDTPSPIVAPWVRNAIPHLHVPNAKARFLRPVGKDEQGDANLQEAER 452 (636)
T ss_pred eEEEEccccccCCcCCCcCcHHHHHhcCCCccceeCCCCCCchhHhcCceEEEEcCccccCCCCCCCCcccchhhhcchh
Confidence 5788999998644 6888999998643 44567888 444 2232211 111
Q ss_pred -cchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhc----CCCcEEE
Q 035988 296 -VGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSK----NKLQVIV 370 (692)
Q Consensus 296 -~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~----g~~~ILV 370 (692)
......+.+..++.. .++.++|.+.|.+..+.+++.|...---...+.|..+ .+...+++|+. |.-.||+
T Consensus 453 ~~~~~~~~~~~~~~~~---~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~ 527 (636)
T TIGR03117 453 TWLENVSLSTAAILRK---AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLI 527 (636)
T ss_pred hHHHHHHHHHHHHHHH---cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEE
Confidence 001244555555553 5779999999999999999999764223345555443 35667888886 4688999
Q ss_pred eccccccccCC--------C--CccEEEEeCCCC-------------------------CHHHHHHHHhhcCCCCCC
Q 035988 371 GTVAFGMGINK--------P--DVRFVIHHSLSK-------------------------SVETYYQESGRAGRDGLP 412 (692)
Q Consensus 371 aT~~~~~GIDi--------p--~v~~VI~~~~P~-------------------------s~~~y~Qr~GRagR~G~~ 412 (692)
+|..|.+|||+ | .+++||...+|. ....+.|-+||.-|....
T Consensus 528 gt~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D 604 (636)
T TIGR03117 528 AAGGAWTGIDLTHKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDM 604 (636)
T ss_pred eCCccccccccCCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCC
Confidence 99999999999 2 377899888883 133467788888887654
No 136
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.68 E-value=1.3e-15 Score=167.37 Aligned_cols=319 Identities=17% Similarity=0.173 Sum_probs=214.1
Q ss_pred CCCHHHHHHHHHHHc----CCCEEEEecCCChhHH--HHHHHHHhcC----CeEEEEcccHHHHHHHHHHHHHcC--CCE
Q 035988 91 AYRANQQEIINAVLS----GRDVLVIMAAGGGKSL--CYQLPAVLRE----GIALVVSPLLSLIQDQVMCLAALG--IPA 158 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~----g~dviv~apTGsGKTl--~~~lpal~~~----~~~lvi~Pt~~L~~q~~~~l~~~g--i~~ 158 (692)
.+.|||++.+..+.. +...|+--..|-|||+ +..|.++.+. +.+|||||. .++.||.+++.... .++
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~-Tii~qW~~E~~~w~p~~rv 283 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPA-TIIHQWMKEFQTWWPPFRV 283 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccH-HHHHHHHHHHHHhCcceEE
Confidence 678999999998763 5678999999999995 3345566554 689999998 68889999999874 455
Q ss_pred EEEecCCChhHH-----HHHHHH-H-HhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCc
Q 035988 159 HMLTSTTSKEDE-----KFIYKA-L-EKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDF 231 (692)
Q Consensus 159 ~~~~~~~~~~~~-----~~~~~~-l-~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~f 231 (692)
.++++..+.... ...+.. + ........|+++|++.+... .....-..++++|+||.|.+-.-.
T Consensus 284 ~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~-------~d~l~~~~W~y~ILDEGH~IrNpn--- 353 (923)
T KOG0387|consen 284 FILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ-------GDDLLGILWDYVILDEGHRIRNPN--- 353 (923)
T ss_pred EEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc-------CcccccccccEEEecCcccccCCc---
Confidence 666665542110 001111 0 01122567999999976421 112223468999999999975433
Q ss_pred hHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHh------------------------------------------
Q 035988 232 RPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEML------------------------------------------ 269 (692)
Q Consensus 232 r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l------------------------------------------ 269 (692)
.++...+...+....|.||+|+-.+....+...+
T Consensus 354 ----s~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca 429 (923)
T KOG0387|consen 354 ----SKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCA 429 (923)
T ss_pred ----cHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHH
Confidence 2333444445556667777776322222111110
Q ss_pred ----------------------ccc---ceEEEe-------------------------------------ccCCCCcce
Q 035988 270 ----------------------HIR---KCIKFV-------------------------------------STINRPNLF 287 (692)
Q Consensus 270 ----------------------~~~---~~~~~~-------------------------------------~~~~r~~l~ 287 (692)
.++ +.++|. ...+.|.+.
T Consensus 430 ~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll 509 (923)
T KOG0387|consen 430 VALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLL 509 (923)
T ss_pred HHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccc
Confidence 011 011111 112233322
Q ss_pred EEE----eecc-----CcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHH-HCCCceeEeccCCCHHHHHHH
Q 035988 288 YMV----REKS-----SVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELR-QRGISADYYHADMDINAREKV 357 (692)
Q Consensus 288 ~~v----~~~~-----~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~-~~g~~v~~~h~~~~~~eR~~~ 357 (692)
..- .... .....++..+..++..-...+.++|+|..|+.....+-..|. ..|+...-+.|..+...|...
T Consensus 510 ~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~l 589 (923)
T KOG0387|consen 510 DRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKL 589 (923)
T ss_pred cCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHH
Confidence 211 0000 011234555666665555578899999999999999999998 589999999999999999999
Q ss_pred HHHHhcCCC-c-EEEeccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEe--ecCCCCH
Q 035988 358 HMRWSKNKL-Q-VIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLL--FFRPADV 424 (692)
Q Consensus 358 ~~~f~~g~~-~-ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~--l~~~~d~ 424 (692)
+++|.++.. . .|++|.+.|.|+|+...+-||.||+-+++.+=.|..-||-|.|+.-.+++ +.+.+-+
T Consensus 590 Vd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTI 660 (923)
T KOG0387|consen 590 VDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTI 660 (923)
T ss_pred HHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcH
Confidence 999998763 3 67899999999999999999999999999999999999999999865544 4555543
No 137
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.68 E-value=8.7e-16 Score=160.50 Aligned_cols=289 Identities=18% Similarity=0.209 Sum_probs=193.8
Q ss_pred CCCCCCHHHHHHHHHHHcC---CCEEEEecCCChhHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHc----CCCEEE
Q 035988 88 GIPAYRANQQEIINAVLSG---RDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMCLAAL----GIPAHM 160 (692)
Q Consensus 88 g~~~~r~~Q~~ai~~il~g---~dviv~apTGsGKTl~~~lpal~~~~~~lvi~Pt~~L~~q~~~~l~~~----gi~~~~ 160 (692)
+-..+||+|...+..+..+ |..+++.|+|+|||++-.-.+-.-...+||++.+-.-+.||...++.. .-.++.
T Consensus 299 Pst~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~tikK~clvLcts~VSVeQWkqQfk~wsti~d~~i~r 378 (776)
T KOG1123|consen 299 PSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTIKKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICR 378 (776)
T ss_pred cccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeeecccEEEEecCccCHHHHHHHHHhhcccCccceEE
Confidence 3447999999999998853 678999999999999875544444678999999888888888888765 234555
Q ss_pred EecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhch-------HHHHHHHHhhhhcCCceEEEEeCcccccccCCCchH
Q 035988 161 LTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKS-------KRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRP 233 (692)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~-------~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~ 233 (692)
++++.... ...++.|+|+|+.++... ...++++.. ..++++++||+|.+...- ||.
T Consensus 379 FTsd~Ke~-----------~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~----~EWGllllDEVHvvPA~M--FRR 441 (776)
T KOG1123|consen 379 FTSDAKER-----------FPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRG----REWGLLLLDEVHVVPAKM--FRR 441 (776)
T ss_pred eecccccc-----------CCCCCcEEEEeeehhhhcccccHHHHHHHHHHhc----CeeeeEEeehhccchHHH--HHH
Confidence 66554321 122789999999998652 344455543 579999999999986544 555
Q ss_pred HHHHHHHHHhhCCCCCEEEEecccchhhHH--HH----------HHHhcccc--------eEEE----eccC--------
Q 035988 234 DYKNLGILKTQFPDVPMMALTATATQKVQN--DL----------MEMLHIRK--------CIKF----VSTI-------- 281 (692)
Q Consensus 234 ~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~--~i----------~~~l~~~~--------~~~~----~~~~-------- 281 (692)
.+..+ ... .-++||||+-.+... ++ .+|+.+.. +..+ ...|
T Consensus 442 Vlsiv---~aH----cKLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~ 514 (776)
T KOG1123|consen 442 VLSIV---QAH----CKLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLREN 514 (776)
T ss_pred HHHHH---HHH----hhccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhh
Confidence 44332 222 247999998543211 11 12222211 0000 0011
Q ss_pred CCCcceEEEeeccCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHH
Q 035988 282 NRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRW 361 (692)
Q Consensus 282 ~r~~l~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f 361 (692)
.+....+.+... .+-...+.|+++... .+.++|||..++-.....+-.| | --++.|..++.+|..+++.|
T Consensus 515 t~kr~lLyvMNP--~KFraCqfLI~~HE~---RgDKiIVFsDnvfALk~YAikl---~--KpfIYG~Tsq~ERm~ILqnF 584 (776)
T KOG1123|consen 515 TRKRMLLYVMNP--NKFRACQFLIKFHER---RGDKIIVFSDNVFALKEYAIKL---G--KPFIYGPTSQNERMKILQNF 584 (776)
T ss_pred hhhhheeeecCc--chhHHHHHHHHHHHh---cCCeEEEEeccHHHHHHHHHHc---C--CceEECCCchhHHHHHHHhc
Confidence 111222222222 122345566666553 6899999998865555554444 2 24778999999999999999
Q ss_pred hcC-CCcEEEeccccccccCCCCccEEEEeCCCC-CHHHHHHHHhhcCCCC
Q 035988 362 SKN-KLQVIVGTVAFGMGINKPDVRFVIHHSLSK-SVETYYQESGRAGRDG 410 (692)
Q Consensus 362 ~~g-~~~ILVaT~~~~~GIDip~v~~VI~~~~P~-s~~~y~Qr~GRagR~G 410 (692)
+.+ .++.++-..+....||+|..+++|+...-. |-.+=.||.||.-|+-
T Consensus 585 q~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAK 635 (776)
T KOG1123|consen 585 QTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 635 (776)
T ss_pred ccCCccceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHh
Confidence 964 688899999999999999999999876553 6778899999988864
No 138
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.65 E-value=3.9e-15 Score=145.74 Aligned_cols=170 Identities=31% Similarity=0.415 Sum_probs=120.3
Q ss_pred cCCCCCCHHHHHHHHHHHcC-CCEEEEecCCChhHHHHHHHHHhc-----CCeEEEEcccHHHHHHHHHHHHHcCC----
Q 035988 87 FGIPAYRANQQEIINAVLSG-RDVLVIMAAGGGKSLCYQLPAVLR-----EGIALVVSPLLSLIQDQVMCLAALGI---- 156 (692)
Q Consensus 87 fg~~~~r~~Q~~ai~~il~g-~dviv~apTGsGKTl~~~lpal~~-----~~~~lvi~Pt~~L~~q~~~~l~~~gi---- 156 (692)
+++..++++|.++++.++.. +.+++.+|||+|||.++..+++.. ..+++|++|+.+++.|+...+.....
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGL 83 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCe
Confidence 57779999999999999998 999999999999999888776643 26799999999999999999987652
Q ss_pred CEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHH
Q 035988 157 PAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYK 236 (692)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~ 236 (692)
......++... ...+..+... ..+++++|++.+..... . ......+++++||||||.+.... +...+.
T Consensus 84 ~~~~~~~~~~~---~~~~~~~~~~--~~~v~~~t~~~l~~~~~---~--~~~~~~~~~~iIiDE~h~~~~~~--~~~~~~ 151 (201)
T smart00487 84 KVVGLYGGDSK---REQLRKLESG--KTDILVTTPGRLLDLLE---N--DLLELSNVDLVILDEAHRLLDGG--FGDQLE 151 (201)
T ss_pred EEEEEeCCcch---HHHHHHHhcC--CCCEEEeChHHHHHHHH---c--CCcCHhHCCEEEEECHHHHhcCC--cHHHHH
Confidence 22223333222 1222333332 44999999997763211 1 11234578899999999988542 445544
Q ss_pred HHHHHHhhCCCCCEEEEecccchhhHHHHHHHhc
Q 035988 237 NLGILKTQFPDVPMMALTATATQKVQNDLMEMLH 270 (692)
Q Consensus 237 ~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~ 270 (692)
.+ +....+..+++++|||++..........+.
T Consensus 152 ~~--~~~~~~~~~~v~~saT~~~~~~~~~~~~~~ 183 (201)
T smart00487 152 KL--LKLLPKNVQLLLLSATPPEEIENLLELFLN 183 (201)
T ss_pred HH--HHhCCccceEEEEecCCchhHHHHHHHhcC
Confidence 42 222346788999999999777666655554
No 139
>COG4889 Predicted helicase [General function prediction only]
Probab=99.65 E-value=8.5e-16 Score=169.18 Aligned_cols=326 Identities=19% Similarity=0.230 Sum_probs=190.3
Q ss_pred CCCCCCHHHHHHHHHHHcC----CCEEEEecCCChhHHHHHH-HHHhcCCeEEEEcccHHHHHHHHHHHHHc---CCCEE
Q 035988 88 GIPAYRANQQEIINAVLSG----RDVLVIMAAGGGKSLCYQL-PAVLREGIALVVSPLLSLIQDQVMCLAAL---GIPAH 159 (692)
Q Consensus 88 g~~~~r~~Q~~ai~~il~g----~dviv~apTGsGKTl~~~l-pal~~~~~~lvi~Pt~~L~~q~~~~l~~~---gi~~~ 159 (692)
.-.+|||+|.+||++++.| ...=++|.+|+|||++.+- .--+...++|+++|+++|..|..+.+..- .+.+.
T Consensus 158 ~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~~~iL~LvPSIsLLsQTlrew~~~~~l~~~a~ 237 (1518)
T COG4889 158 KPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAAARILFLVPSISLLSQTLREWTAQKELDFRAS 237 (1518)
T ss_pred CCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhhhheEeecchHHHHHHHHHHHhhccCccceeE
Confidence 3348999999999999875 3356778999999998762 22233489999999999999999988753 56666
Q ss_pred EEecCCChh-----------------HHHHHHHHHH--hcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeC
Q 035988 160 MLTSTTSKE-----------------DEKFIYKALE--KGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDE 220 (692)
Q Consensus 160 ~~~~~~~~~-----------------~~~~~~~~l~--~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDE 220 (692)
.++++.... ....++..+. ....+.-|+++|++.+.... ..+ ...+..+++||.||
T Consensus 238 aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~----eAQ-e~G~~~fDliicDE 312 (1518)
T COG4889 238 AVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIK----EAQ-EAGLDEFDLIICDE 312 (1518)
T ss_pred EEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHH----HHH-HcCCCCccEEEecc
Confidence 666553211 1112222222 12346789999999875321 112 22457899999999
Q ss_pred cccccccC--CCchHHHHHHHHHHhhCCCCCEEEEecccch---hhHHHHH----HHhcccceEEEeccCCCCcc-----
Q 035988 221 AHCCSQWG--HDFRPDYKNLGILKTQFPDVPMMALTATATQ---KVQNDLM----EMLHIRKCIKFVSTINRPNL----- 286 (692)
Q Consensus 221 aH~l~~~g--~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~---~~~~~i~----~~l~~~~~~~~~~~~~r~~l----- 286 (692)
||+-..-. .+-...+.++.. .........+.|||||.- ....... ....+.+...+...|.|-+.
T Consensus 313 AHRTtGa~~a~dd~saFt~vHs-~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~rl~FgeAv~ 391 (1518)
T COG4889 313 AHRTTGATLAGDDKSAFTRVHS-DQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFHRLGFGEAVE 391 (1518)
T ss_pred hhccccceecccCcccceeecC-cchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchhhhcccHHHHHH
Confidence 99853200 000000000000 000012235688999732 1111111 11112222222222222110
Q ss_pred -----eEEEeec----------------cCcchHHHHHHHHHH------HHh-C------------CCCCceEEEEeccc
Q 035988 287 -----FYMVREK----------------SSVGKVVIDEIAKYI------QES-Y------------PNSESGIVYCFSRK 326 (692)
Q Consensus 287 -----~~~v~~~----------------~~~~~~~~~~l~~~l------~~~-~------------~~~~~~IIf~~s~~ 326 (692)
.|.|.-. .....-.++....++ ... . .+-+++|-||.+++
T Consensus 392 rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RAIaF~k~I~ 471 (1518)
T COG4889 392 RDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRAIAFAKDIK 471 (1518)
T ss_pred hhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHHHHHHHhhH
Confidence 0111100 000001112221111 111 0 12356789999999
Q ss_pred hHHHHHHHHHH---------------CCCceeEeccCCCHHHHHHHHHH---HhcCCCcEEEeccccccccCCCCccEEE
Q 035988 327 ECEQVAQELRQ---------------RGISADYYHADMDINAREKVHMR---WSKNKLQVIVGTVAFGMGINKPDVRFVI 388 (692)
Q Consensus 327 ~~e~l~~~L~~---------------~g~~v~~~h~~~~~~eR~~~~~~---f~~g~~~ILVaT~~~~~GIDip~v~~VI 388 (692)
+...+++.+.. ..+.+....|.|+..+|...... |...+++||-....+++|+|+|.++.||
T Consensus 472 tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsVi 551 (1518)
T COG4889 472 TSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVI 551 (1518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEE
Confidence 88888776642 13456677788999999554432 3456788988888999999999999999
Q ss_pred EeCCCCCHHHHHHHHhhcCCCCCC---CeeEeec
Q 035988 389 HHSLSKSVETYYQESGRAGRDGLP---SECLLFF 419 (692)
Q Consensus 389 ~~~~P~s~~~y~Qr~GRagR~G~~---g~~i~l~ 419 (692)
++++-.|+.+.+|.+||.-|.... |..|+-+
T Consensus 552 Ff~pr~smVDIVQaVGRVMRKa~gK~yGYIILPI 585 (1518)
T COG4889 552 FFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPI 585 (1518)
T ss_pred EecCchhHHHHHHHHHHHHHhCcCCccceEEEEe
Confidence 999999999999999999996432 5555443
No 140
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.65 E-value=2.6e-14 Score=163.21 Aligned_cols=294 Identities=12% Similarity=0.060 Sum_probs=191.2
Q ss_pred ecCCChhHHHHHHHH---HhcCCeEEEEcccHHHHHHHHHHHHH-cC-CCEEEEecCCChhHHHHHHHHHHhcCCCccEE
Q 035988 113 MAAGGGKSLCYQLPA---VLREGIALVVSPLLSLIQDQVMCLAA-LG-IPAHMLTSTTSKEDEKFIYKALEKGEGELKML 187 (692)
Q Consensus 113 apTGsGKTl~~~lpa---l~~~~~~lvi~Pt~~L~~q~~~~l~~-~g-i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Il 187 (692)
+.+|||||.+|+-.+ +..++.+||++|.++|..|..+.|+. +| ..+..+++..+..++...|..+..| ..+|+
T Consensus 167 ~~~GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G--~~~IV 244 (665)
T PRK14873 167 ALPGEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRG--QARVV 244 (665)
T ss_pred cCCCCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCC--CCcEE
Confidence 346999999997332 45678999999999999999999986 56 7899999999999999999998877 89999
Q ss_pred EeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccC-CCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHH
Q 035988 188 YVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWG-HDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLM 266 (692)
Q Consensus 188 i~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g-~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~ 266 (692)
|+|-..+.. .+.++++|||||=|.-+--. ...+...+.+..++....++++++-|||++-+......
T Consensus 245 iGtRSAvFa------------P~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~~~ 312 (665)
T PRK14873 245 VGTRSAVFA------------PVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQALVE 312 (665)
T ss_pred EEcceeEEe------------ccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHh
Confidence 999987754 34689999999999754211 11334456777888888899999999999976654433
Q ss_pred HHhcccceEEEe---ccCCCCcceEEEeecc-------CcchHHHHHHHHHHHHhCCCCCceEEEEeccchH--------
Q 035988 267 EMLHIRKCIKFV---STINRPNLFYMVREKS-------SVGKVVIDEIAKYIQESYPNSESGIVYCFSRKEC-------- 328 (692)
Q Consensus 267 ~~l~~~~~~~~~---~~~~r~~l~~~v~~~~-------~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~-------- 328 (692)
. +........ .....|.+...-.... ......-..+.+.+++.+..+ ++|||.|.+-.+
T Consensus 313 ~--g~~~~~~~~~~~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~g-qvll~lnRrGyap~l~C~~C 389 (665)
T PRK14873 313 S--GWAHDLVAPRPVVRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHG-PVLVQVPRRGYVPSLACARC 389 (665)
T ss_pred c--CcceeeccccccccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcC-cEEEEecCCCCCCeeEhhhC
Confidence 2 111100000 0111233222211110 000012334556666666567 999999887433
Q ss_pred ---------------------------------------------------HHHHHHHHHC--CCceeEeccCCCHHHHH
Q 035988 329 ---------------------------------------------------EQVAQELRQR--GISADYYHADMDINARE 355 (692)
Q Consensus 329 ---------------------------------------------------e~l~~~L~~~--g~~v~~~h~~~~~~eR~ 355 (692)
+.+.+.|.+. +.++..+ +++
T Consensus 390 g~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r~-------d~d 462 (665)
T PRK14873 390 RTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVTS-------GGD 462 (665)
T ss_pred cCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEEE-------ChH
Confidence 2233333222 1222221 123
Q ss_pred HHHHHHhcCCCcEEEeccccccccCCCCccEEEEeCCC------C------CHHHHHHHHhhcCCCCCCCeeEeecCCCC
Q 035988 356 KVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLS------K------SVETYYQESGRAGRDGLPSECLLFFRPAD 423 (692)
Q Consensus 356 ~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~~P------~------s~~~y~Qr~GRagR~G~~g~~i~l~~~~d 423 (692)
.+++.|. ++.+|||+|..++.=+. +++..|+..|.- . ....+.|-+||+||.+.+|.+++...++.
T Consensus 463 ~~l~~~~-~~~~IlVGTqgaepm~~-g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~~p~~ 540 (665)
T PRK14873 463 QVVDTVD-AGPALVVATPGAEPRVE-GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVAESSL 540 (665)
T ss_pred HHHHhhc-cCCCEEEECCCCccccc-CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCCC
Confidence 4778886 58999999983222222 467777665543 1 45567899999999999999999875544
Q ss_pred HHHHHHHHhh
Q 035988 424 VPRQSSMVFY 433 (692)
Q Consensus 424 ~~~~~~l~~~ 433 (692)
+.++.+...
T Consensus 541 -~~~~~l~~~ 549 (665)
T PRK14873 541 -PTVQALIRW 549 (665)
T ss_pred -HHHHHHHhC
Confidence 444554443
No 141
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.63 E-value=1.9e-13 Score=158.78 Aligned_cols=167 Identities=19% Similarity=0.231 Sum_probs=107.7
Q ss_pred EEEEecccch-hhHHHHHHHhcccc-----eEEEeccCCCCcceEEEeec---c-CcchHHHHHHHHHHHHhCCCCCceE
Q 035988 250 MMALTATATQ-KVQNDLMEMLHIRK-----CIKFVSTINRPNLFYMVREK---S-SVGKVVIDEIAKYIQESYPNSESGI 319 (692)
Q Consensus 250 ~i~lSAT~~~-~~~~~i~~~l~~~~-----~~~~~~~~~r~~l~~~v~~~---~-~~~~~~~~~l~~~l~~~~~~~~~~I 319 (692)
+|++|||+++ .....+.+.+|++. ...+.++|+-.+....+... . .......+.+.+.|......++.++
T Consensus 459 vIltSATL~~~~~f~~~~~~lGL~~~~~~~~~~~~SpF~~~~q~~l~vp~~~~~p~~~~~~~~~~~~~i~~l~~~~gg~L 538 (697)
T PRK11747 459 AVLTSATLRSLNSFDRFQEQSGLPEKDGDRFLALPSPFDYPNQGKLVIPKMRAEPDNEEAHTAEMAEFLPELLEKHKGSL 538 (697)
T ss_pred EEEEeeeCCCCCchHHHHHHcCCCCCCCceEEEcCCCCCHHHccEEEeCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCEE
Confidence 4678898875 24566777888863 34455666543322222211 1 1223344555555544433455689
Q ss_pred EEEeccchHHHHHHHHHHC-CCceeEeccCCCHHHHHHHHHHHh----cCCCcEEEeccccccccCCCC--ccEEEEeCC
Q 035988 320 VYCFSRKECEQVAQELRQR-GISADYYHADMDINAREKVHMRWS----KNKLQVIVGTVAFGMGINKPD--VRFVIHHSL 392 (692)
Q Consensus 320 If~~s~~~~e~l~~~L~~~-g~~v~~~h~~~~~~eR~~~~~~f~----~g~~~ILVaT~~~~~GIDip~--v~~VI~~~~ 392 (692)
||++|.+..+.++..|... +.. ...+|.. .|..+++.|+ .++-.||++|..|.+|||+|+ +++||...+
T Consensus 539 VlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~vII~kL 614 (697)
T PRK11747 539 VLFASRRQMQKVADLLPRDLRLM-LLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQVIITKI 614 (697)
T ss_pred EEeCcHHHHHHHHHHHHHhcCCc-EEEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEEEEEcC
Confidence 9999999999999999753 433 3445542 4677787776 467789999999999999997 678998888
Q ss_pred CC----C--------------------------HHHHHHHHhhcCCCCCCCeeEeecC
Q 035988 393 SK----S--------------------------VETYYQESGRAGRDGLPSECLLFFR 420 (692)
Q Consensus 393 P~----s--------------------------~~~y~Qr~GRagR~G~~g~~i~l~~ 420 (692)
|. + +..+.|.+||.-|...+--++++++
T Consensus 615 PF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD 672 (697)
T PRK11747 615 PFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILD 672 (697)
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEc
Confidence 74 1 1235678899988765533344443
No 142
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.58 E-value=1.2e-13 Score=151.93 Aligned_cols=321 Identities=17% Similarity=0.180 Sum_probs=217.9
Q ss_pred CCCHHHHHHHHHHH----cCCCEEEEecCCChhHHHH--HHHHHh---cCCeEEEEcccHHHHHHHHHHHHHcCC--CEE
Q 035988 91 AYRANQQEIINAVL----SGRDVLVIMAAGGGKSLCY--QLPAVL---REGIALVVSPLLSLIQDQVMCLAALGI--PAH 159 (692)
Q Consensus 91 ~~r~~Q~~ai~~il----~g~dviv~apTGsGKTl~~--~lpal~---~~~~~lvi~Pt~~L~~q~~~~l~~~gi--~~~ 159 (692)
++.+||.--++++. .+-+.|+.-..|-|||.-. .+..|. ..+.-|||||.-.| +.|.+++.++.. ++.
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsSTl-eNWlrEf~kwCPsl~Ve 477 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSSTL-ENWLREFAKWCPSLKVE 477 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecchhH-HHHHHHHHHhCCceEEE
Confidence 47899999998865 3556799999999999522 222232 25789999999655 556788888754 444
Q ss_pred EEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHH
Q 035988 160 MLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLG 239 (692)
Q Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~ 239 (692)
.++|.. .++..+...+......++|+++|+.....+..=..++.+ .+++++|+||+|.+-+.+. .-|+.|-
T Consensus 478 ~YyGSq--~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~----~~~n~viyDEgHmLKN~~S---eRy~~LM 548 (941)
T KOG0389|consen 478 PYYGSQ--DERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKN----QKFNYVIYDEGHMLKNRTS---ERYKHLM 548 (941)
T ss_pred eccCcH--HHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHh----ccccEEEecchhhhhccch---HHHHHhc
Confidence 455544 677777777888777999999999988765544444443 4799999999999876552 1222222
Q ss_pred HHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEe-----------------------------------------
Q 035988 240 ILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFV----------------------------------------- 278 (692)
Q Consensus 240 ~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~----------------------------------------- 278 (692)
.+ +.-..+++|+||-.+....+...|.+--+.+|.
T Consensus 549 ~I----~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFI 624 (941)
T KOG0389|consen 549 SI----NANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFI 624 (941)
T ss_pred cc----cccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHH
Confidence 11 233568999998544443333322210000000
Q ss_pred ---------------------------------------------ccCC--CCc--c----------------eE-----
Q 035988 279 ---------------------------------------------STIN--RPN--L----------------FY----- 288 (692)
Q Consensus 279 ---------------------------------------------~~~~--r~~--l----------------~~----- 288 (692)
.+.+ +++ + +|
T Consensus 625 LRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L 704 (941)
T KOG0389|consen 625 LRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKL 704 (941)
T ss_pred HHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHH
Confidence 0000 000 0 00
Q ss_pred ----------------------------------------------EEeeccCcchHHHHHHHHHHHHhCCCCCceEEEE
Q 035988 289 ----------------------------------------------MVREKSSVGKVVIDEIAKYIQESYPNSESGIVYC 322 (692)
Q Consensus 289 ----------------------------------------------~v~~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~ 322 (692)
......-....++..|..++.+....|.+++||.
T Consensus 705 ~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFS 784 (941)
T KOG0389|consen 705 RKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFS 784 (941)
T ss_pred HHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEee
Confidence 0000000001112223333333334789999999
Q ss_pred eccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCC-C-cEEEeccccccccCCCCccEEEEeCCCCCHHHHH
Q 035988 323 FSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNK-L-QVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYY 400 (692)
Q Consensus 323 ~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~-~-~ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~ 400 (692)
.-....+.|-..|...++.-.-+.|...-.+|+.+++.|..++ + -+|++|.+.|.|||+...++||.||+..++-+=.
T Consensus 785 QFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~ 864 (941)
T KOG0389|consen 785 QFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDK 864 (941)
T ss_pred HHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccc
Confidence 9888899999999999999999999999999999999998765 3 3678999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCC--eeEeecCCCCHH
Q 035988 401 QESGRAGRDGLPS--ECLLFFRPADVP 425 (692)
Q Consensus 401 Qr~GRagR~G~~g--~~i~l~~~~d~~ 425 (692)
|.--||.|.|+.. +++-+++.+-+.
T Consensus 865 QAEDRcHRvGQtkpVtV~rLItk~TIE 891 (941)
T KOG0389|consen 865 QAEDRCHRVGQTKPVTVYRLITKSTIE 891 (941)
T ss_pred hhHHHHHhhCCcceeEEEEEEecCcHH
Confidence 9999999999874 556667766543
No 143
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.58 E-value=1.3e-14 Score=140.99 Aligned_cols=154 Identities=21% Similarity=0.271 Sum_probs=99.7
Q ss_pred CCCHHHHHHHHHHHc-------CCCEEEEecCCChhHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHcCCCEEEEec
Q 035988 91 AYRANQQEIINAVLS-------GRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTS 163 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~-------g~dviv~apTGsGKTl~~~lpal~~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~ 163 (692)
+|||+|.+++..+.. .+.+++.||||+|||.+++..+.....++++++|+.+|+.|+...+..++........
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~~~l~~~p~~~l~~Q~~~~~~~~~~~~~~~~~ 82 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELARKVLIVAPNISLLEQWYDEFDDFGSEKYNFFE 82 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHCEEEEEESSHHHHHHHHHHHHHHSTTSEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccccceeEecCHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 589999999999984 5889999999999999887544433349999999999999999999766433322211
Q ss_pred C--------------CChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHH------HhhhhcCCceEEEEeCccc
Q 035988 164 T--------------TSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKL------EKCHHAGRLSLISIDEAHC 223 (692)
Q Consensus 164 ~--------------~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l------~~~~~~~~l~~iVIDEaH~ 223 (692)
. ...... .. .......+++++|..++.......... .........++||+||||+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~ 157 (184)
T PF04851_consen 83 KSIKPAYDSKEFISIQDDISD---KS--ESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHH 157 (184)
T ss_dssp --GGGCCE-SEEETTTTEEEH---HH--HHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGC
T ss_pred ccccccccccccccccccccc---cc--ccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhh
Confidence 1 111111 11 122337899999999887532221100 0112345688999999999
Q ss_pred ccccCCCchHHHHHHHHHHhhCCCCCEEEEecccc
Q 035988 224 CSQWGHDFRPDYKNLGILKTQFPDVPMMALTATAT 258 (692)
Q Consensus 224 l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~ 258 (692)
+.... .+.. +.. ++...+++|||||.
T Consensus 158 ~~~~~-----~~~~---i~~-~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 158 YPSDS-----SYRE---IIE-FKAAFILGLTATPF 183 (184)
T ss_dssp THHHH-----HHHH---HHH-SSCCEEEEEESS-S
T ss_pred cCCHH-----HHHH---HHc-CCCCeEEEEEeCcc
Confidence 65211 1333 222 66778999999986
No 144
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.56 E-value=2.4e-13 Score=158.71 Aligned_cols=167 Identities=19% Similarity=0.224 Sum_probs=104.6
Q ss_pred CEEEEecccchh-hHHHHHHHhcccceE---EEeccCCCCcceE-EEeeccCcch--HHHHHHHHHHHHhC-CCCCceEE
Q 035988 249 PMMALTATATQK-VQNDLMEMLHIRKCI---KFVSTINRPNLFY-MVREKSSVGK--VVIDEIAKYIQESY-PNSESGIV 320 (692)
Q Consensus 249 ~~i~lSAT~~~~-~~~~i~~~l~~~~~~---~~~~~~~r~~l~~-~v~~~~~~~~--~~~~~l~~~l~~~~-~~~~~~II 320 (692)
.++++|||+++. ....+...++..... ...++++...... .+........ .....+...+.... ..+++++|
T Consensus 405 ~~vl~SaTL~~~~~f~~~~~~~~~~~~~~~~~~~spf~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~lv 484 (654)
T COG1199 405 SVVLTSATLSPLDSFSSLLGLLGLEEKLRFLSLPSPFNYEEQGQLYVPTDLPEPREPELLAKLAAYLREILKASPGGVLV 484 (654)
T ss_pred cEEEeeeeccCCCcHHHHHHHcCCccccceeccCCCCChhhcceEeccccCCCCCChHHHHHHHHHHHHHHhhcCCCEEE
Confidence 467788888763 233344444444333 2233444333211 1211111111 33444444433221 13458999
Q ss_pred EEeccchHHHHHHHHHHCCCc-eeEeccCCCHHHHHHHHHHHhcCCC-cEEEeccccccccCCCCc--cEEEEeCCCC--
Q 035988 321 YCFSRKECEQVAQELRQRGIS-ADYYHADMDINAREKVHMRWSKNKL-QVIVGTVAFGMGINKPDV--RFVIHHSLSK-- 394 (692)
Q Consensus 321 f~~s~~~~e~l~~~L~~~g~~-v~~~h~~~~~~eR~~~~~~f~~g~~-~ILVaT~~~~~GIDip~v--~~VI~~~~P~-- 394 (692)
|++|.+..+.+++.+...... ....+|..+ +...++.|+.+.- .++|+|..|++|||+|+- +.||..++|.
T Consensus 485 lF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~~lPfp~ 561 (654)
T COG1199 485 LFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIVGLPFPN 561 (654)
T ss_pred EeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEEecCCCC
Confidence 999999999999999877652 445555544 4478888887554 899999999999999975 6788888874
Q ss_pred ----------------------------CHHHHHHHHhhcCCCCCC-CeeEee
Q 035988 395 ----------------------------SVETYYQESGRAGRDGLP-SECLLF 418 (692)
Q Consensus 395 ----------------------------s~~~y~Qr~GRagR~G~~-g~~i~l 418 (692)
-+....|.+||.-|.-.+ |.++++
T Consensus 562 p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivll 614 (654)
T COG1199 562 PDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLL 614 (654)
T ss_pred CCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEe
Confidence 355678999999996554 444444
No 145
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.56 E-value=1.1e-12 Score=153.51 Aligned_cols=168 Identities=14% Similarity=0.175 Sum_probs=105.1
Q ss_pred EEEEecccchhhHHHHHHHhcccceEEEec--cCCCCcceEEEeecc------------CcchHHHHHHHHHHHHhCC-C
Q 035988 250 MMALTATATQKVQNDLMEMLHIRKCIKFVS--TINRPNLFYMVREKS------------SVGKVVIDEIAKYIQESYP-N 314 (692)
Q Consensus 250 ~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~--~~~r~~l~~~v~~~~------------~~~~~~~~~l~~~l~~~~~-~ 314 (692)
+|++|||+++ .+.+.+.||+........ .+...++...+.... .........+.+.|..... .
T Consensus 444 vil~SgTL~p--~~~~~~~Lg~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~r~~~~~~~~l~~~i~~~~~~~ 521 (705)
T TIGR00604 444 VILASGTLSP--LDAFPRNLGFNPVSQDSPTHILKRENLLTLIVTRGSDQVPLSSTFEIRNDPSLVRNLGELLVEFSKII 521 (705)
T ss_pred EEEecccCCc--HHHHHHHhCCCCccceecCcccchHHeEEEEEeeCCCCCeeeeehhccCCHHHHHHHHHHHHHHhhcC
Confidence 5678899887 455677788754332211 112223222222211 1112344555555544332 3
Q ss_pred CCceEEEEeccchHHHHHHHHHHCCC-------ceeEeccCCCHHHHHHHHHHHhc----CCCcEEEec--cccccccCC
Q 035988 315 SESGIVYCFSRKECEQVAQELRQRGI-------SADYYHADMDINAREKVHMRWSK----NKLQVIVGT--VAFGMGINK 381 (692)
Q Consensus 315 ~~~~IIf~~s~~~~e~l~~~L~~~g~-------~v~~~h~~~~~~eR~~~~~~f~~----g~~~ILVaT--~~~~~GIDi 381 (692)
++.+|||++|....+.+++.+...|. ...++-+ -+..++..+++.|+. |+-.||+|+ ..+++|||+
T Consensus 522 pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~-~~~~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGIDf 600 (705)
T TIGR00604 522 PDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVET-KDAQETSDALERYKQAVSEGRGAVLLSVAGGKVSEGIDF 600 (705)
T ss_pred CCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeC-CCcchHHHHHHHHHHHHhcCCceEEEEecCCcccCcccc
Confidence 57889999999999999998876532 1222222 222578889999964 455699999 789999999
Q ss_pred CC--ccEEEEeCCCC-CH------------------------------HHHHHHHhhcCCCCCCCeeEeecC
Q 035988 382 PD--VRFVIHHSLSK-SV------------------------------ETYYQESGRAGRDGLPSECLLFFR 420 (692)
Q Consensus 382 p~--v~~VI~~~~P~-s~------------------------------~~y~Qr~GRagR~G~~g~~i~l~~ 420 (692)
++ .+.||..++|. ++ ....|.+||+=|.-.+--++++++
T Consensus 601 ~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~G~iillD 672 (705)
T TIGR00604 601 CDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDYGSIVLLD 672 (705)
T ss_pred CCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCceEEEEEEe
Confidence 98 58899999986 11 234588899999876633444443
No 146
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.55 E-value=1.7e-12 Score=146.71 Aligned_cols=309 Identities=19% Similarity=0.176 Sum_probs=185.5
Q ss_pred CCCHHHHHHHHHHHc---CC-------CEEEEecCCChhHHHHH--HHHHhc---C-----CeEEEEcccHHHHHHHHHH
Q 035988 91 AYRANQQEIINAVLS---GR-------DVLVIMAAGGGKSLCYQ--LPAVLR---E-----GIALVVSPLLSLIQDQVMC 150 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~---g~-------dviv~apTGsGKTl~~~--lpal~~---~-----~~~lvi~Pt~~L~~q~~~~ 150 (692)
.++|+|.+.+.-+-. |. .+|+.-..|+|||+-.. +..+++ . .++|||+|. +|+..|.++
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkkE 316 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKKE 316 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccH-HHHHHHHHH
Confidence 689999998877542 22 37888889999997432 333433 2 579999997 788888888
Q ss_pred HHHcC----CCEEEEecCCCh--hHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccc
Q 035988 151 LAALG----IPAHMLTSTTSK--EDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCC 224 (692)
Q Consensus 151 l~~~g----i~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l 224 (692)
|.+-. +....+.|.... .....+. .+....-..-+++.+++.+. +..+.+ ....++++|+||.|++
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~~w~~~~sil-~~~~~~~~~~vli~sye~~~---~~~~~i----l~~~~glLVcDEGHrl 388 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKSSWIKLKSIL-FLGYKQFTTPVLIISYETAS---DYCRKI----LLIRPGLLVCDEGHRL 388 (776)
T ss_pred HHHhccccccceeeeecccchhhhhhHHHH-HhhhhheeEEEEeccHHHHH---HHHHHH----hcCCCCeEEECCCCCc
Confidence 88752 334444444432 0001111 01111114567788888764 222222 3458999999999996
Q ss_pred cccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccce------------------------------
Q 035988 225 SQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKC------------------------------ 274 (692)
Q Consensus 225 ~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~------------------------------ 274 (692)
-... ..+-.......-...|+||+|+-++....+...|.+-.|
T Consensus 389 kN~~-------s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~ 461 (776)
T KOG0390|consen 389 KNSD-------SLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDR 461 (776)
T ss_pred cchh-------hHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhh
Confidence 4322 222222222334456899999854444433333322111
Q ss_pred -----------------------------------EEEecc----------------------------------CCCCc
Q 035988 275 -----------------------------------IKFVST----------------------------------INRPN 285 (692)
Q Consensus 275 -----------------------------------~~~~~~----------------------------------~~r~~ 285 (692)
+++..+ .+.|.
T Consensus 462 ~~~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~ 541 (776)
T KOG0390|consen 462 EREERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPS 541 (776)
T ss_pred hhHHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHH
Confidence 111000 00011
Q ss_pred ceE-EE----------------------eeccCcchHHHHHHHHHHHHhCCCCCceEEEEe---ccchHHHHHHHH-HHC
Q 035988 286 LFY-MV----------------------REKSSVGKVVIDEIAKYIQESYPNSESGIVYCF---SRKECEQVAQEL-RQR 338 (692)
Q Consensus 286 l~~-~v----------------------~~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~---s~~~~e~l~~~L-~~~ 338 (692)
+.. .- .........++..|..++.. ..+++++|+. .......+.+.+ +-.
T Consensus 542 L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~---~~ek~~~~~v~Isny~~tldl~e~~~~~~ 618 (776)
T KOG0390|consen 542 LLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEV---IREKLLVKSVLISNYTQTLDLFEQLCRWR 618 (776)
T ss_pred hhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHH---HhhhcceEEEEeccHHHHHHHHHHHHhhc
Confidence 100 00 00000001122223333321 2344555543 334444444333 345
Q ss_pred CCceeEeccCCCHHHHHHHHHHHhcCCCc---EEEeccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCee
Q 035988 339 GISADYYHADMDINAREKVHMRWSKNKLQ---VIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSEC 415 (692)
Q Consensus 339 g~~v~~~h~~~~~~eR~~~~~~f~~g~~~---ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~ 415 (692)
|+.+..+||.|+..+|+.+++.|.+..-. .|.+|.|.|.||++-+.+-||.+|.+++++.=.|.++||-|+|+.-.|
T Consensus 619 g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v 698 (776)
T KOG0390|consen 619 GYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPV 698 (776)
T ss_pred CceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceE
Confidence 99999999999999999999999975432 567899999999999999999999999999999999999999999888
Q ss_pred Eee
Q 035988 416 LLF 418 (692)
Q Consensus 416 i~l 418 (692)
++|
T Consensus 699 ~iY 701 (776)
T KOG0390|consen 699 YIY 701 (776)
T ss_pred EEE
Confidence 776
No 147
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.55 E-value=1.2e-13 Score=157.73 Aligned_cols=314 Identities=18% Similarity=0.224 Sum_probs=209.4
Q ss_pred CCCHHHHHHHHHHHcC-CCEEEEecCCChhHHHHHHHHHhc--CCeEEEEcccHHHHHHHHHHHHHc-----CCCEEEEe
Q 035988 91 AYRANQQEIINAVLSG-RDVLVIMAAGGGKSLCYQLPAVLR--EGIALVVSPLLSLIQDQVMCLAAL-----GIPAHMLT 162 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~g-~dviv~apTGsGKTl~~~lpal~~--~~~~lvi~Pt~~L~~q~~~~l~~~-----gi~~~~~~ 162 (692)
.+.|+|.++++.+.+. .++++.+|+|||||.|+-+..+.. .+++++|.|.-+.+..++..+.+. |..+..++
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ 1222 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLRPDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLT 1222 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcCCccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecC
Confidence 4589999999988764 569999999999999998866543 369999999999988777666542 77777888
Q ss_pred cCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCC-CchHHHHHHHHH
Q 035988 163 STTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGH-DFRPDYKNLGIL 241 (692)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~-~fr~~~~~l~~l 241 (692)
|..+.+-+ .+. ..+|+|+||+++... + +...++++|.||.|.+...+. .+.-... +.-+
T Consensus 1223 ge~s~~lk-----l~~----~~~vii~tpe~~d~l-------q---~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~i 1282 (1674)
T KOG0951|consen 1223 GETSLDLK-----LLQ----KGQVIISTPEQWDLL-------Q---SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYI 1282 (1674)
T ss_pred CccccchH-----Hhh----hcceEEechhHHHHH-------h---hhhhcceEeeehhhhhcccCCceEEEEee-HHHH
Confidence 77665422 122 469999999977421 2 346799999999999874322 1111111 1122
Q ss_pred Hh-hCCCCCEEEEecccchhhHHHHHHHhcccceEEEe-ccCCCCcc-eEEEeec--cCcc---hHHHHHHHHHHHHhCC
Q 035988 242 KT-QFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFV-STINRPNL-FYMVREK--SSVG---KVVIDEIAKYIQESYP 313 (692)
Q Consensus 242 ~~-~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~-~~~~r~~l-~~~v~~~--~~~~---~~~~~~l~~~l~~~~~ 313 (692)
.. .-.+..++++|...+.. . ..++....-++. .+..||+. ...+... .... ....+.....+..+..
T Consensus 1283 a~q~~k~ir~v~ls~~lana-~----d~ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~ 1357 (1674)
T KOG0951|consen 1283 ASQLEKKIRVVALSSSLANA-R----DLIGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAG 1357 (1674)
T ss_pred HHHHHhheeEEEeehhhccc-h----hhccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhc
Confidence 22 22466788888877642 2 226665544443 34445532 2222211 1111 1112233333444444
Q ss_pred CCCceEEEEeccchHHHHHHHHHHC----------------------CCceeEeccCCCHHHHHHHHHHHhcCCCcEEEe
Q 035988 314 NSESGIVYCFSRKECEQVAQELRQR----------------------GISADYYHADMDINAREKVHMRWSKNKLQVIVG 371 (692)
Q Consensus 314 ~~~~~IIf~~s~~~~e~l~~~L~~~----------------------g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVa 371 (692)
.++++|||++++++|..++..|-.. ..+..+=|-+++..+...+..-|..|.++|+|.
T Consensus 1358 ~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~ 1437 (1674)
T KOG0951|consen 1358 NRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVM 1437 (1674)
T ss_pred CCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEE
Confidence 7899999999999998877655321 122333399999999999999999999999998
Q ss_pred ccccccccCCCCccEEE----------EeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHHHHHHHHhh
Q 035988 372 TVAFGMGINKPDVRFVI----------HHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFY 433 (692)
Q Consensus 372 T~~~~~GIDip~v~~VI----------~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~~~~l~~~ 433 (692)
..- .+|+-...--+|+ |--.+.++.+..|+.|+|.| .|.|+++....+....+++...
T Consensus 1438 s~~-~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkfl~e 1505 (1674)
T KOG0951|consen 1438 SRD-CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKFLYE 1505 (1674)
T ss_pred Ecc-cccccccceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHhccC
Confidence 776 7777654332222 11245579999999999998 5789999999888888877654
No 148
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.53 E-value=2.9e-14 Score=119.05 Aligned_cols=81 Identities=32% Similarity=0.521 Sum_probs=77.8
Q ss_pred HHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCC
Q 035988 330 QVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRD 409 (692)
Q Consensus 330 ~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~ 409 (692)
.+++.|...++.+..+||++++++|..+++.|.++...|||+|+++++|+|+|+++.||.+++|.+...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 56788888899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 035988 410 G 410 (692)
Q Consensus 410 G 410 (692)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 6
No 149
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.48 E-value=2.1e-12 Score=135.45 Aligned_cols=307 Identities=17% Similarity=0.208 Sum_probs=194.0
Q ss_pred CCCHHHHHHHHHHH-cCCCEEEEecCCChhHHHHHHHHH--hcCCeEEEEcccHHHHHHHHHHHHHc-C--CCEEEEecC
Q 035988 91 AYRANQQEIINAVL-SGRDVLVIMAAGGGKSLCYQLPAV--LREGIALVVSPLLSLIQDQVMCLAAL-G--IPAHMLTST 164 (692)
Q Consensus 91 ~~r~~Q~~ai~~il-~g~dviv~apTGsGKTl~~~lpal--~~~~~~lvi~Pt~~L~~q~~~~l~~~-g--i~~~~~~~~ 164 (692)
.+-|+|++-+...+ .|..+++.-..|-|||+-++.-|- ......|||+|. +|-..|.+.++++ + .++.++.++
T Consensus 198 ~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraEwplliVcPA-svrftWa~al~r~lps~~pi~vv~~~ 276 (689)
T KOG1000|consen 198 RLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAEWPLLIVCPA-SVRFTWAKALNRFLPSIHPIFVVDKS 276 (689)
T ss_pred hhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhcCcEEEEecH-HHhHHHHHHHHHhcccccceEEEecc
Confidence 57799999776665 577899999999999987654332 235788999997 5666677777765 2 222333333
Q ss_pred CChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHHHHhh
Q 035988 165 TSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQ 244 (692)
Q Consensus 165 ~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~ 244 (692)
.+.. ..+ .....|.|++++++.. +.+.+ .-..+.++|+||+|.+-+--.. | .+..-.+.+.
T Consensus 277 ~D~~------~~~---~t~~~v~ivSye~ls~---l~~~l----~~~~~~vvI~DEsH~Lk~sktk-r--~Ka~~dllk~ 337 (689)
T KOG1000|consen 277 SDPL------PDV---CTSNTVAIVSYEQLSL---LHDIL----KKEKYRVVIFDESHMLKDSKTK-R--TKAATDLLKV 337 (689)
T ss_pred cCCc------ccc---ccCCeEEEEEHHHHHH---HHHHH----hcccceEEEEechhhhhccchh-h--hhhhhhHHHH
Confidence 2211 000 1146789999998753 22222 2346899999999987542210 0 1111111111
Q ss_pred CCCCCEEEEecccchh----hHHHHH---------------HHhcccc---eEEEec-----------------------
Q 035988 245 FPDVPMMALTATATQK----VQNDLM---------------EMLHIRK---CIKFVS----------------------- 279 (692)
Q Consensus 245 ~~~~~~i~lSAT~~~~----~~~~i~---------------~~l~~~~---~~~~~~----------------------- 279 (692)
-..+|+||+|+.-. ....|. ++-.... +.-+..
T Consensus 338 --akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~d 415 (689)
T KOG1000|consen 338 --AKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKAD 415 (689)
T ss_pred --hhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 23478999997311 111000 0000000 000000
Q ss_pred -----cCCCCcceEEEeec--------------------cC------------cchHHHHHHHHHHHHh----CCCCCce
Q 035988 280 -----TINRPNLFYMVREK--------------------SS------------VGKVVIDEIAKYIQES----YPNSESG 318 (692)
Q Consensus 280 -----~~~r~~l~~~v~~~--------------------~~------------~~~~~~~~l~~~l~~~----~~~~~~~ 318 (692)
+..|..+.+..... .. ....++..+.++|..+ -.++.+.
T Consensus 416 vL~qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~Kf 495 (689)
T KOG1000|consen 416 VLKQLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKF 495 (689)
T ss_pred HHhhCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceE
Confidence 00011111100000 00 0011234455555552 2367899
Q ss_pred EEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCC-CcE-EEeccccccccCCCCccEEEEeCCCCCH
Q 035988 319 IVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNK-LQV-IVGTVAFGMGINKPDVRFVIHHSLSKSV 396 (692)
Q Consensus 319 IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~-~~I-LVaT~~~~~GIDip~v~~VI~~~~P~s~ 396 (692)
+|||.-....+.+...+.+.++...-+.|..++.+|....+.|+.++ +.| +++-.++++|+++...+.|++..+|+++
T Consensus 496 lVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnP 575 (689)
T KOG1000|consen 496 LVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNP 575 (689)
T ss_pred EEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCC
Confidence 99999999999999999999999999999999999999999999754 444 4567789999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCeeEeec
Q 035988 397 ETYYQESGRAGRDGLPSECLLFF 419 (692)
Q Consensus 397 ~~y~Qr~GRagR~G~~g~~i~l~ 419 (692)
--++|.--|+.|.|+.+.+.++|
T Consensus 576 gvLlQAEDRaHRiGQkssV~v~y 598 (689)
T KOG1000|consen 576 GVLLQAEDRAHRIGQKSSVFVQY 598 (689)
T ss_pred ceEEechhhhhhccccceeeEEE
Confidence 99999999999999986655544
No 150
>PF00570 HRDC: HRDC domain Bloom syndrome. Werner syndrome.; InterPro: IPR002121 The HRDC (Helicase and RNase D C-terminal) domain has a putative role in nucleic acid binding. Mutations in the HRDC domain associated with the human BLM gene result in Bloom Syndrome (BS), an autosomal recessive disorder characterised by proportionate pre- and postnatal growth deficiency; sun-sensitive, telangiectatic, hypo- and hyperpigmented skin; predisposition to malignancy; and chromosomal instability [].; GO: 0003676 nucleic acid binding, 0005622 intracellular; PDB: 3SAG_B 3SAH_B 2CPR_A 3SAF_B 3CYM_A 1WUD_A 2HBK_A 2HBJ_A 2HBM_A 2HBL_A ....
Probab=99.48 E-value=3e-14 Score=115.05 Aligned_cols=65 Identities=43% Similarity=0.594 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCceEeccHHHHHHHHHcCCCChhhcchhhhhhc--ccchhhhhhhHHHHHHH
Q 035988 575 SALEFELDELRKELASISGGILPHSVLSSQLIRLISARKPSTMEEASSNHLEKI--IGKLKTGKYGSRILEVI 645 (692)
Q Consensus 575 ~~l~~~l~~~r~~~a~~~~~~~~~~i~~~~~l~~~~~~~p~~~~~~~~~~l~~i--~g~~k~~~~g~~~l~~~ 645 (692)
.++|.+|.+||.++|++ .|+|||.||+|.+|.+||.++|.|.++ |.+| +|+.++++||++||++|
T Consensus 2 ~~~~~~L~~~R~~~A~~-~~~~~~~Il~~~~L~~ia~~~P~s~~~-----L~~i~g~~~~~~~~~g~~il~~I 68 (68)
T PF00570_consen 2 LALLKALKEWREELARE-EDVPPYRILSDEALLEIAKRLPTSIEE-----LLQIPGMGKRKVRKYGDEILEII 68 (68)
T ss_dssp HHHHHHHHHHHHHHHHH-HTS-HHHHS-HHHHHHHHHH--SSHHH-----HHTSTTCGHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-cCcCcccccCHHHHHHHHHhCCCCHHH-----HHHccCCCHHHHHHHHHHHHhhC
Confidence 57999999999999999 799999999999999999999999999 9999 99999999999999987
No 151
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.46 E-value=6.9e-13 Score=122.03 Aligned_cols=136 Identities=29% Similarity=0.351 Sum_probs=93.8
Q ss_pred CCEEEEecCCChhHHHHHHHHHh-----cCCeEEEEcccHHHHHHHHHHHHHcC---CCEEEEecCCChhHHHHHHHHHH
Q 035988 107 RDVLVIMAAGGGKSLCYQLPAVL-----REGIALVVSPLLSLIQDQVMCLAALG---IPAHMLTSTTSKEDEKFIYKALE 178 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~lpal~-----~~~~~lvi~Pt~~L~~q~~~~l~~~g---i~~~~~~~~~~~~~~~~~~~~l~ 178 (692)
+++++.+|||+|||.++...+.. ..++++|++|+..+++|+.+.+.... +.+..+.+........ ...
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 76 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE----KLL 76 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH----HHh
Confidence 46899999999999988766543 24899999999999999999888764 6677777665444322 111
Q ss_pred hcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEeccc
Q 035988 179 KGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATA 257 (692)
Q Consensus 179 ~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~ 257 (692)
. ...+|+++|++.+... .. ........++++||||+|.+.... +.... ........+..+++++|||+
T Consensus 77 ~--~~~~i~i~t~~~~~~~---~~--~~~~~~~~~~~iiiDE~h~~~~~~--~~~~~--~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 77 S--GKTDIVVGTPGRLLDE---LE--RLKLSLKKLDLLILDEAHRLLNQG--FGLLG--LKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred c--CCCCEEEECcHHHHHH---HH--cCCcchhcCCEEEEeCHHHHhhcc--hHHHH--HHHHhhCCccceEEEEeccC
Confidence 2 2789999999977531 11 111123578999999999986532 22211 11233445678899999996
No 152
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.42 E-value=9.8e-12 Score=141.18 Aligned_cols=330 Identities=20% Similarity=0.191 Sum_probs=214.3
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc---CCeEEEEcccHHHHHH----HHHHHHH
Q 035988 81 DVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR---EGIALVVSPLLSLIQD----QVMCLAA 153 (692)
Q Consensus 81 ~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~---~~~~lvi~Pt~~L~~q----~~~~l~~ 153 (692)
++-+..+|+ +|+=.|.+-.+.-+..-++.|.||-|||++..+|+.+. +..+.+|+..--||.- .-..+..
T Consensus 71 Ea~~Rvlg~---~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gkgVhvVTvNdYLA~RDae~m~~l~~~ 147 (822)
T COG0653 71 EASKRVLGM---RHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALAGKGVHVVTVNDYLARRDAEWMGPLYEF 147 (822)
T ss_pred HHHHHhcCC---ChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcCCCCcEEeeehHHhhhhCHHHHHHHHHH
Confidence 334445665 44446777777778889999999999999999998754 5677778888778653 4444556
Q ss_pred cCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHH---hhhhcCCceEEEEeCccccc-----
Q 035988 154 LGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLE---KCHHAGRLSLISIDEAHCCS----- 225 (692)
Q Consensus 154 ~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~---~~~~~~~l~~iVIDEaH~l~----- 225 (692)
+|+.+.+...+.+..++...+ .+||.|+|...+.- ..+.+.+. .......+.+.||||++.+.
T Consensus 148 LGlsvG~~~~~m~~~ek~~aY--------~~DItY~TnnElGF-DYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEAR 218 (822)
T COG0653 148 LGLSVGVILAGMSPEEKRAAY--------ACDITYGTNNELGF-DYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEAR 218 (822)
T ss_pred cCCceeeccCCCChHHHHHHH--------hcCceeccccccCc-chhhhhhhccHHHhhhccCCeEEEcchhheeeeccc
Confidence 799999999999888777766 58999999987742 12222221 22244568899999999764
Q ss_pred -----ccCCCc-hHHHHHHHHHHhhCC---------CCCEEEEecccchh------------------------------
Q 035988 226 -----QWGHDF-RPDYKNLGILKTQFP---------DVPMMALTATATQK------------------------------ 260 (692)
Q Consensus 226 -----~~g~~f-r~~~~~l~~l~~~~~---------~~~~i~lSAT~~~~------------------------------ 260 (692)
.|.... ...|..+..+..... ....+.||-.--..
T Consensus 219 tPLiISG~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~ 298 (822)
T COG0653 219 TPLIISGPAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHI 298 (822)
T ss_pred cceeeecccccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHH
Confidence 231111 122333222221111 01111111110000
Q ss_pred ---------------------------------------------------------------------------hHHHH
Q 035988 261 ---------------------------------------------------------------------------VQNDL 265 (692)
Q Consensus 261 ---------------------------------------------------------------------------~~~~i 265 (692)
....-
T Consensus 299 l~~~D~dYIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~ 378 (822)
T COG0653 299 LFFRDVDYIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEE 378 (822)
T ss_pred HhhcCCeeEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhh
Confidence 00000
Q ss_pred HHHhcccceEEEeccCCCCcceEEEeec-cCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeE
Q 035988 266 MEMLHIRKCIKFVSTINRPNLFYMVREK-SSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADY 344 (692)
Q Consensus 266 ~~~l~~~~~~~~~~~~~r~~l~~~v~~~-~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~ 344 (692)
.++..+....++.-+.++|.+....... ......++..+++.+...+..++|+||-+.+++..+.+.+.|++.|++...
T Consensus 379 ~EF~~iY~l~vv~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~V 458 (822)
T COG0653 379 EEFDVIYGLDVVVIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNV 458 (822)
T ss_pred hhhhhccCCceeeccCCCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCcee
Confidence 0111111223334445555443222111 122356778888888888889999999999999999999999999999999
Q ss_pred eccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCcc-----------EEEEeCCCCCHHHHHHHHhhcCCCCCCC
Q 035988 345 YHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVR-----------FVIHHSLSKSVETYYQESGRAGRDGLPS 413 (692)
Q Consensus 345 ~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~-----------~VI~~~~P~s~~~y~Qr~GRagR~G~~g 413 (692)
+++.-...+-..+.+.-+.|. |-|||+++|+|-|+.--. +||-...-.|-.---|-.||+||.|.+|
T Consensus 459 LNAk~h~~EA~Iia~AG~~ga--VTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG 536 (822)
T COG0653 459 LNAKNHAREAEIIAQAGQPGA--VTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPG 536 (822)
T ss_pred eccccHHHHHHHHhhcCCCCc--cccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcc
Confidence 999888666666665555444 789999999999985211 3666655556665669999999999999
Q ss_pred eeEeecCCCCH
Q 035988 414 ECLLFFRPADV 424 (692)
Q Consensus 414 ~~i~l~~~~d~ 424 (692)
.+-.|++-.|-
T Consensus 537 ~S~F~lSleD~ 547 (822)
T COG0653 537 SSRFYLSLEDD 547 (822)
T ss_pred hhhhhhhhHHH
Confidence 99988887663
No 153
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.40 E-value=1.6e-11 Score=140.66 Aligned_cols=110 Identities=15% Similarity=0.215 Sum_probs=93.5
Q ss_pred CCCceEEEEeccchHHHHHHHHHHCCC---ceeEeccCCCHHHHHHHHHHHhcC-CCcEE-EeccccccccCCCCccEEE
Q 035988 314 NSESGIVYCFSRKECEQVAQELRQRGI---SADYYHADMDINAREKVHMRWSKN-KLQVI-VGTVAFGMGINKPDVRFVI 388 (692)
Q Consensus 314 ~~~~~IIf~~s~~~~e~l~~~L~~~g~---~v~~~h~~~~~~eR~~~~~~f~~g-~~~IL-VaT~~~~~GIDip~v~~VI 388 (692)
.+.+++|||+-+...+.+.+.|.+.-. .-..+.|..++.+|.++.++|.++ .++|| .+|-+.|.|+|+.+.+.||
T Consensus 1339 sqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVV 1418 (1549)
T KOG0392|consen 1339 SQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVV 1418 (1549)
T ss_pred ccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEE
Confidence 356899999999999999988876532 234789999999999999999998 68876 5788999999999999999
Q ss_pred EeCCCCCHHHHHHHHhhcCCCCCCCe--eEeecCCCC
Q 035988 389 HHSLSKSVETYYQESGRAGRDGLPSE--CLLFFRPAD 423 (692)
Q Consensus 389 ~~~~P~s~~~y~Qr~GRagR~G~~g~--~i~l~~~~d 423 (692)
.+.-.+++-.=.|.+-||.|.|+.-. +|-+.+.+-
T Consensus 1419 FvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGT 1455 (1549)
T KOG0392|consen 1419 FVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGT 1455 (1549)
T ss_pred EEecCCCchhhHHHHHHHHhhcCceeeeeeeehhccc
Confidence 99999999999999999999998844 444555443
No 154
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.39 E-value=2.8e-11 Score=139.94 Aligned_cols=309 Identities=18% Similarity=0.130 Sum_probs=172.7
Q ss_pred HHHHHHHHHHHc--------CCCEEEEecCCChhHHHHH--HHHHhc---CCeEEEEcccHHHHHHHHHHHHHc-C---C
Q 035988 94 ANQQEIINAVLS--------GRDVLVIMAAGGGKSLCYQ--LPAVLR---EGIALVVSPLLSLIQDQVMCLAAL-G---I 156 (692)
Q Consensus 94 ~~Q~~ai~~il~--------g~dviv~apTGsGKTl~~~--lpal~~---~~~~lvi~Pt~~L~~q~~~~l~~~-g---i 156 (692)
.+|-.|.+.+.. |-=++-.|.||+|||++=. +-++.. +.+..|-.-+|.|.-|+-+.+++. | -
T Consensus 411 ~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLsd~~~g~RfsiALGLRTLTLQTGda~r~rL~L~~d 490 (1110)
T TIGR02562 411 RWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALRDDKQGARFAIALGLRSLTLQTGHALKTRLNLSDD 490 (1110)
T ss_pred chHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhCCCCCCceEEEEccccceeccchHHHHHhcCCCcc
Confidence 588888888764 1126778999999998743 223322 236666677777777777777652 2 2
Q ss_pred CEEEEecCCChhHHHHHHHH----------------------------------------HH-----hcCCCccEEEeCh
Q 035988 157 PAHMLTSTTSKEDEKFIYKA----------------------------------------LE-----KGEGELKMLYVTP 191 (692)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~----------------------------------------l~-----~~~~~~~Ili~Tp 191 (692)
..+++.|+....+.-....+ +. ...-...++|||+
T Consensus 491 dLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv~V~TI 570 (1110)
T TIGR02562 491 DLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPVLVCTI 570 (1110)
T ss_pred ceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCeEEecH
Confidence 34444444322111100000 00 0011457999999
Q ss_pred hhhhchHHHHH---HHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHHHHh--hCCCCCEEEEecccchhhHHHHH
Q 035988 192 EKISKSKRFMS---KLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKT--QFPDVPMMALTATATQKVQNDLM 266 (692)
Q Consensus 192 e~l~~~~~~~~---~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~--~~~~~~~i~lSAT~~~~~~~~i~ 266 (692)
+.+.....-.. .......+ .-+.|||||+|.+...- +..|..+.. ...+.+++++|||+|+.....+.
T Consensus 571 DQlL~a~~~~r~~~~~l~ll~L-a~svlVlDEVHaYD~~~------~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~~L~ 643 (1110)
T TIGR02562 571 DHLIPATESHRGGHHIAPMLRL-MSSDLILDEPDDYEPED------LPALLRLVQLAGLLGSRVLLSSATLPPALVKTLF 643 (1110)
T ss_pred HHHHHHhhhcccchhHHHHHHh-cCCCEEEECCccCCHHH------HHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHH
Confidence 98763210000 00000001 23679999999965322 111223333 34588999999999998887765
Q ss_pred HHh-----------cccc-eE-EEeccCCC--------------------------------Ccc-eEEEeeccC---cc
Q 035988 267 EML-----------HIRK-CI-KFVSTINR--------------------------------PNL-FYMVREKSS---VG 297 (692)
Q Consensus 267 ~~l-----------~~~~-~~-~~~~~~~r--------------------------------~~l-~~~v~~~~~---~~ 297 (692)
+.. +.+. ++ +...-++. |.. .-.+.+... ..
T Consensus 644 ~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~~~~~ 723 (1110)
T TIGR02562 644 RAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSLPREN 723 (1110)
T ss_pred HHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCcccch
Confidence 443 2111 11 11111110 000 001111111 11
Q ss_pred hHHHHHHHHHH--------HHhC---C-CCCc---eEEEEeccchHHHHHHHHHHC----C--CceeEeccCCCHHHHHH
Q 035988 298 KVVIDEIAKYI--------QESY---P-NSES---GIVYCFSRKECEQVAQELRQR----G--ISADYYHADMDINAREK 356 (692)
Q Consensus 298 ~~~~~~l~~~l--------~~~~---~-~~~~---~IIf~~s~~~~e~l~~~L~~~----g--~~v~~~h~~~~~~eR~~ 356 (692)
......+.+.+ ..+. + .+++ ++|-.++++.+-.++..|... + +.+.+||+......|..
T Consensus 724 ~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~ 803 (1110)
T TIGR02562 724 ESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSY 803 (1110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHH
Confidence 11222222222 1111 1 1222 478889999999999888754 2 34778999998777766
Q ss_pred HHHHH----------------------hc----CCCcEEEeccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCC
Q 035988 357 VHMRW----------------------SK----NKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDG 410 (692)
Q Consensus 357 ~~~~f----------------------~~----g~~~ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G 410 (692)
+.+.. .+ +...|+|+|.+.+.|+|+ |.+++| .-|.++.+.+|++||+.|.|
T Consensus 804 ~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~--~~~~~~~sliQ~aGR~~R~~ 880 (1110)
T TIGR02562 804 IERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAI--ADPSSMRSIIQLAGRVNRHR 880 (1110)
T ss_pred HHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeee--eccCcHHHHHHHhhcccccc
Confidence 65443 12 356799999999999997 455554 34667999999999999988
Q ss_pred CC
Q 035988 411 LP 412 (692)
Q Consensus 411 ~~ 412 (692)
..
T Consensus 881 ~~ 882 (1110)
T TIGR02562 881 LE 882 (1110)
T ss_pred cC
Confidence 64
No 155
>smart00341 HRDC Helicase and RNase D C-terminal. Hypothetical role in nucleic acid binding. Mutations in the HRDC domain cause human disease.
Probab=99.38 E-value=1.6e-12 Score=108.92 Aligned_cols=74 Identities=28% Similarity=0.421 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCceEeccHHHHHHHHHcCCCChhhcchhhhhhc--ccchhhhhhhHHHHHHHHhhhcc
Q 035988 574 SSALEFELDELRKELASISGGILPHSVLSSQLIRLISARKPSTMEEASSNHLEKI--IGKLKTGKYGSRILEVISKCGNS 651 (692)
Q Consensus 574 ~~~l~~~l~~~r~~~a~~~~~~~~~~i~~~~~l~~~~~~~p~~~~~~~~~~l~~i--~g~~k~~~~g~~~l~~~~~~~~~ 651 (692)
..++|++|..||.++|++ .++|||.||+|.+|.+||..+|.|.++ |..+ +|..++.+||..|+++|+.+.+.
T Consensus 4 ~~~~~~~L~~wR~~~A~~-~~~~~~~I~~~~~L~~ia~~~P~~~~~-----L~~i~g~~~~~~~~~g~~~~~~i~~~~~~ 77 (81)
T smart00341 4 QLRLLRRLRQWRDEIARR-EDVPPYFVLPDETLIKMAAALPTNVSE-----LLAIDGVGEEKARRYGKDLLAVIQEASDS 77 (81)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCCCeEEECHHHHHHHHHHCCCCHHH-----HhcCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 578999999999999999 899999999999999999999999999 9999 99999999999999999998865
Q ss_pred CC
Q 035988 652 EQ 653 (692)
Q Consensus 652 ~~ 653 (692)
..
T Consensus 78 ~~ 79 (81)
T smart00341 78 PS 79 (81)
T ss_pred cc
Confidence 43
No 156
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.38 E-value=8.6e-12 Score=140.72 Aligned_cols=313 Identities=18% Similarity=0.165 Sum_probs=208.1
Q ss_pred CCCHHHHHHHHHHHc----CCCEEEEecCCChhHHHHH------HHHHhcCCeEEEEcccHHHHHHHHHHHHHcCCCEEE
Q 035988 91 AYRANQQEIINAVLS----GRDVLVIMAAGGGKSLCYQ------LPAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHM 160 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~----g~dviv~apTGsGKTl~~~------lpal~~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~ 160 (692)
.+++||..-+.++.+ +-+.|+.-.+|-|||...+ +-.....|.-|||+|+-.|.+++. ++..-.-.+..
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~NW~~-Ef~kWaPSv~~ 472 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVNWSS-EFPKWAPSVQK 472 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCCchh-hccccccceee
Confidence 899999999998764 3468999999999996432 222223578899999999887644 44444445555
Q ss_pred EecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHH
Q 035988 161 LTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGI 240 (692)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~ 240 (692)
+....+...+......+..+ +++|+++|++.+.....++. + -++.++||||.|+|..-. ..|..
T Consensus 473 i~YkGtp~~R~~l~~qir~g--KFnVLlTtyEyiikdk~lLs---K----I~W~yMIIDEGHRmKNa~-------~KLt~ 536 (1157)
T KOG0386|consen 473 IQYKGTPQQRSGLTKQQRHG--KFNVLLTTYEYIIKDKALLS---K----ISWKYMIIDEGHRMKNAI-------CKLTD 536 (1157)
T ss_pred eeeeCCHHHHhhHHHHHhcc--cceeeeeeHHHhcCCHHHHh---c----cCCcceeecccccccchh-------hHHHH
Confidence 55556677777777777775 99999999999987554433 2 378899999999986411 11111
Q ss_pred -HHhhCCCCCEEEEecccchhhHHHHHHHhcc------------------------------------------------
Q 035988 241 -LKTQFPDVPMMALTATATQKVQNDLMEMLHI------------------------------------------------ 271 (692)
Q Consensus 241 -l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~------------------------------------------------ 271 (692)
+...+.....+++|+|+..+....+...|++
T Consensus 537 ~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPF 616 (1157)
T KOG0386|consen 537 TLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPF 616 (1157)
T ss_pred HhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHH
Confidence 1112222233455555522221111111110
Q ss_pred -------------cc------------------------eEEEe--------------------ccCCCCcceEEE----
Q 035988 272 -------------RK------------------------CIKFV--------------------STINRPNLFYMV---- 290 (692)
Q Consensus 272 -------------~~------------------------~~~~~--------------------~~~~r~~l~~~v---- 290 (692)
|+ ...+. .-.+.|-++-.+
T Consensus 617 lLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~ 696 (1157)
T KOG0386|consen 617 LLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSY 696 (1157)
T ss_pred HHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhcccc
Confidence 00 00000 001111111000
Q ss_pred eecc--------CcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHh
Q 035988 291 REKS--------SVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWS 362 (692)
Q Consensus 291 ~~~~--------~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~ 362 (692)
.... ..+..+++.++.-++ ..+++++.||.-..-...+-.+|.-.++.-.-+.|....++|-..++.|.
T Consensus 697 ~~~~~~~dL~R~sGKfELLDRiLPKLk---atgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN 773 (1157)
T KOG0386|consen 697 TLHYDIKDLVRVSGKFELLDRILPKLK---ATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFN 773 (1157)
T ss_pred ccccChhHHHHhccHHHHHHhhhHHHH---hcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhc
Confidence 0000 001122233333333 36899999999888888888899888899999999999999999999998
Q ss_pred cCC---CcEEEeccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCC
Q 035988 363 KNK---LQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPAD 423 (692)
Q Consensus 363 ~g~---~~ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d 423 (692)
.-. ..+|.+|.+.|.|+|+.-.+.||.||.-+++....|+--||.|.|+...+-++....-
T Consensus 774 ~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv 837 (1157)
T KOG0386|consen 774 APDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITV 837 (1157)
T ss_pred CCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehh
Confidence 754 3478899999999999999999999999999999999999999999877776655443
No 157
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.28 E-value=1.8e-10 Score=130.19 Aligned_cols=284 Identities=15% Similarity=0.146 Sum_probs=180.5
Q ss_pred CEEEEecCCChhHHHHHHHHHh----cCCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCC
Q 035988 108 DVLVIMAAGGGKSLCYQLPAVL----REGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGE 183 (692)
Q Consensus 108 dviv~apTGsGKTl~~~lpal~----~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~ 183 (692)
-.++.+|.|+|||.+..-+.-. ...++|+|+.+++|+.+...+++..|+.-.....+..... +. ...
T Consensus 51 V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~~l~gFv~Y~d~~~~~-------i~--~~~ 121 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKAGLSGFVNYLDSDDYI-------ID--GRP 121 (824)
T ss_pred eEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhcCCCcceeeecccccc-------cc--ccc
Confidence 3689999999999865433221 3579999999999999999999988764322222221110 00 013
Q ss_pred ccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHH----HHhhCCC-CCEEEEecccc
Q 035988 184 LKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGI----LKTQFPD-VPMMALTATAT 258 (692)
Q Consensus 184 ~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~----l~~~~~~-~~~i~lSAT~~ 258 (692)
.+-++++.+.|.. +. ...+.++++|||||+-.+... -|.+.+++... +.....+ ..+|++-||+.
T Consensus 122 ~~rLivqIdSL~R---~~-----~~~l~~yDvVIIDEv~svL~q--L~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln 191 (824)
T PF02399_consen 122 YDRLIVQIDSLHR---LD-----GSLLDRYDVVIIDEVMSVLNQ--LFSPTMRQREEVDNLLKELIRNAKTVIVMDADLN 191 (824)
T ss_pred cCeEEEEehhhhh---cc-----cccccccCEEEEehHHHHHHH--HhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCC
Confidence 5778888887752 21 112456899999999876532 24444443322 2222223 34789999999
Q ss_pred hhhHHHHHHHhcccceEEEeccCCCCcc-----eE-----------EEee----------------------ccCcchHH
Q 035988 259 QKVQNDLMEMLHIRKCIKFVSTINRPNL-----FY-----------MVRE----------------------KSSVGKVV 300 (692)
Q Consensus 259 ~~~~~~i~~~l~~~~~~~~~~~~~r~~l-----~~-----------~v~~----------------------~~~~~~~~ 300 (692)
....+.+...-+..+..++...+..++. .. .... ........
T Consensus 192 ~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF 271 (824)
T PF02399_consen 192 DQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTF 271 (824)
T ss_pred HHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhH
Confidence 9999888876555544443333221110 00 0000 00011122
Q ss_pred HHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccC
Q 035988 301 IDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGIN 380 (692)
Q Consensus 301 ~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GID 380 (692)
...|.. .+..++++-||+.|...++.+++.....+.++..++|.-+..+ + +.| ++.+|++=|+++..|++
T Consensus 272 ~~~L~~----~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d---v-~~W--~~~~VviYT~~itvG~S 341 (824)
T PF02399_consen 272 FSELLA----RLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED---V-ESW--KKYDVVIYTPVITVGLS 341 (824)
T ss_pred HHHHHH----HHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc---c-ccc--cceeEEEEeceEEEEec
Confidence 333333 3337889999999999999999999998999999998766552 2 234 56889999999999999
Q ss_pred CCCccE--EEEeCCC----CCHHHHHHHHhhcCCCCCCCeeEeecCC
Q 035988 381 KPDVRF--VIHHSLS----KSVETYYQESGRAGRDGLPSECLLFFRP 421 (692)
Q Consensus 381 ip~v~~--VI~~~~P----~s~~~y~Qr~GRagR~G~~g~~i~l~~~ 421 (692)
+.+..+ |+-|=-| .++.+.+|++||.-.-. ....++++..
T Consensus 342 f~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d~ 387 (824)
T PF02399_consen 342 FEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYIDA 387 (824)
T ss_pred cchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEec
Confidence 976654 4444223 36778999999996543 4555666554
No 158
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.16 E-value=9.9e-10 Score=120.12 Aligned_cols=105 Identities=14% Similarity=0.165 Sum_probs=90.1
Q ss_pred CCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhc--CCCcE-EEeccccccccCCCCccEEEEe
Q 035988 314 NSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSK--NKLQV-IVGTVAFGMGINKPDVRFVIHH 390 (692)
Q Consensus 314 ~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~--g~~~I-LVaT~~~~~GIDip~v~~VI~~ 390 (692)
..++++|...-.....-+...|.+.|.....+||....++|..+++.|.. |..+| |++-.+-|.|+|+-+.+++|..
T Consensus 745 skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilv 824 (901)
T KOG4439|consen 745 SKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILV 824 (901)
T ss_pred ccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEE
Confidence 56677777666666777888888899999999999999999999999974 44454 5677888999999999999999
Q ss_pred CCCCCHHHHHHHHhhcCCCCCCCeeEee
Q 035988 391 SLSKSVETYYQESGRAGRDGLPSECLLF 418 (692)
Q Consensus 391 ~~P~s~~~y~Qr~GRagR~G~~g~~i~l 418 (692)
|+-+++.-=.|..-|.-|.|+...++++
T Consensus 825 DlHWNPaLEqQAcDRIYR~GQkK~V~Ih 852 (901)
T KOG4439|consen 825 DLHWNPALEQQACDRIYRMGQKKDVFIH 852 (901)
T ss_pred ecccCHHHHHHHHHHHHHhcccCceEEE
Confidence 9999999999999999999998776654
No 159
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.13 E-value=5.7e-10 Score=117.29 Aligned_cols=110 Identities=16% Similarity=0.141 Sum_probs=94.4
Q ss_pred CCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCC-Cc-EEEeccccccccCCCCccEEEEeC
Q 035988 314 NSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNK-LQ-VIVGTVAFGMGINKPDVRFVIHHS 391 (692)
Q Consensus 314 ~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~-~~-ILVaT~~~~~GIDip~v~~VI~~~ 391 (692)
..-+.|||..-....+.+.-.|.+.|+.|.-+-|+|++..|...++.|+++- +. .||+-.+.|.-+|+.....|+.+|
T Consensus 637 ~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmD 716 (791)
T KOG1002|consen 637 RTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMD 716 (791)
T ss_pred cchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeec
Confidence 4557899998888899999999999999999999999999999999999863 44 577889999999999999999999
Q ss_pred CCCCHHHHHHHHhhcCCCCCC--CeeEeecCCCC
Q 035988 392 LSKSVETYYQESGRAGRDGLP--SECLLFFRPAD 423 (692)
Q Consensus 392 ~P~s~~~y~Qr~GRagR~G~~--g~~i~l~~~~d 423 (692)
+.+++.--.|...|..|.|+. -.++.|+-...
T Consensus 717 PWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEns 750 (791)
T KOG1002|consen 717 PWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENS 750 (791)
T ss_pred ccccHHHHhhhhhhHHhhcCccceeEEEeehhcc
Confidence 999999999999999998864 44555554433
No 160
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.10 E-value=9.5e-09 Score=122.95 Aligned_cols=285 Identities=18% Similarity=0.157 Sum_probs=159.6
Q ss_pred CCEEEEecCCChhHHHHHHHHH-----hcCCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcC
Q 035988 107 RDVLVIMAAGGGKSLCYQLPAV-----LREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGE 181 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~lpal-----~~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (692)
+..+++--||||||++....|- ...+.++||+.++.|-.|..+.+..++..........+. ......+..+
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~~~~s~---~~Lk~~l~~~- 349 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDPKAEST---SELKELLEDG- 349 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcccccCH---HHHHHHHhcC-
Confidence 4599999999999987653332 235899999999999999999999986433322222222 2333334433
Q ss_pred CCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhh
Q 035988 182 GELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKV 261 (692)
Q Consensus 182 ~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~ 261 (692)
.-.|+|+|-+++.... .........++--.||+||||+ ++.| +. -..+...+++...++||+||--.-
T Consensus 350 -~~~ii~TTIQKf~~~~---~~~~~~~~~~~~ivvI~DEaHR-SQ~G--~~-----~~~~~~~~~~a~~~gFTGTPi~~~ 417 (962)
T COG0610 350 -KGKIIVTTIQKFNKAV---KEDELELLKRKNVVVIIDEAHR-SQYG--EL-----AKLLKKALKKAIFIGFTGTPIFKE 417 (962)
T ss_pred -CCcEEEEEecccchhh---hcccccccCCCcEEEEEechhh-cccc--HH-----HHHHHHHhccceEEEeeCCccccc
Confidence 5689999999886421 1100111123345799999998 5555 11 124577788899999999984322
Q ss_pred HHH-HHHHhcccceEEEec-cCCCC---cceEEEe-eccC----------------------------------------
Q 035988 262 QND-LMEMLHIRKCIKFVS-TINRP---NLFYMVR-EKSS---------------------------------------- 295 (692)
Q Consensus 262 ~~~-i~~~l~~~~~~~~~~-~~~r~---~l~~~v~-~~~~---------------------------------------- 295 (692)
-.. -...+|..-...... ...-. .+.|... ....
T Consensus 418 d~~tt~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~ 497 (962)
T COG0610 418 DKDTTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAML 497 (962)
T ss_pred cccchhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcc
Confidence 111 112222111000000 00000 1111111 0000
Q ss_pred --cchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCC-----------------------ceeEeccCCC
Q 035988 296 --VGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGI-----------------------SADYYHADMD 350 (692)
Q Consensus 296 --~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~-----------------------~v~~~h~~~~ 350 (692)
........+.+.+........++++.|.+++.+..+++....... .....|...
T Consensus 498 ~~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~- 576 (962)
T COG0610 498 AVRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAKL- 576 (962)
T ss_pred hHHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHHH-
Confidence 000011122222222122567888888888855555554432200 000012222
Q ss_pred HHHHHHHHHHH--hcCCCcEEEeccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCC
Q 035988 351 INAREKVHMRW--SKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRD 409 (692)
Q Consensus 351 ~~eR~~~~~~f--~~g~~~ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~ 409 (692)
...+.....+| .....++||.++.+-.|+|.|-++.+. .|-|----..+|.+-|+.|.
T Consensus 577 ~~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~ 636 (962)
T COG0610 577 KDEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRV 636 (962)
T ss_pred HHHHhhhhhhhcCcCCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccC
Confidence 22233344443 346799999999999999999777665 56666667889999999995
No 161
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.07 E-value=9.8e-09 Score=112.15 Aligned_cols=119 Identities=19% Similarity=0.228 Sum_probs=102.4
Q ss_pred HHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCc-EEEecccccccc
Q 035988 301 IDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQ-VIVGTVAFGMGI 379 (692)
Q Consensus 301 ~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~-ILVaT~~~~~GI 379 (692)
++.|+.-++ ..+.++|+|+.-.+....+-++|...++.-.-+.|.....+|..+..+|+..++- .|++|.+.|.||
T Consensus 1033 LDeLL~kLk---aegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGI 1109 (1185)
T KOG0388|consen 1033 LDELLPKLK---AEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGI 1109 (1185)
T ss_pred HHHHHHHhh---cCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccc
Confidence 445554444 3788999999999999999999999999999999999999999999999986644 578999999999
Q ss_pred CCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCe--eEeecCCC
Q 035988 380 NKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSE--CLLFFRPA 422 (692)
Q Consensus 380 Dip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~--~i~l~~~~ 422 (692)
|+...+.||+||..+++..-.|...||.|-|+... +|-++..+
T Consensus 1110 NLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rg 1154 (1185)
T KOG0388|consen 1110 NLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRG 1154 (1185)
T ss_pred cccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccc
Confidence 99999999999999999999999999999998754 44444444
No 162
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=99.02 E-value=1.8e-08 Score=102.61 Aligned_cols=135 Identities=22% Similarity=0.233 Sum_probs=94.0
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc---CCeEEEEcccHHHHHHHHHHHH---
Q 035988 79 ADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR---EGIALVVSPLLSLIQDQVMCLA--- 152 (692)
Q Consensus 79 ~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~---~~~~lvi~Pt~~L~~q~~~~l~--- 152 (692)
+.++..+.+|+ .|++.|.-++=.+..|+ |+.+.||-|||++..+|+... +..+-||+....|+..-.+.+.
T Consensus 66 ~rea~~r~~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y 142 (266)
T PF07517_consen 66 VREAARRTLGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFY 142 (266)
T ss_dssp HHHHHHHHTS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHH
Confidence 34445556777 67788888776665555 999999999999999888754 6788899999999887666655
Q ss_pred -HcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHh---hhhcCCceEEEEeCccccc
Q 035988 153 -ALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEK---CHHAGRLSLISIDEAHCCS 225 (692)
Q Consensus 153 -~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~---~~~~~~l~~iVIDEaH~l~ 225 (692)
.+|+.+..+.++.+..++...+ .++|+|+|...+.- ..+.+.+.. ......+.++||||||.+.
T Consensus 143 ~~LGlsv~~~~~~~~~~~r~~~Y--------~~dI~Y~t~~~~~f-D~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 143 EFLGLSVGIITSDMSSEERREAY--------AADIVYGTNSEFGF-DYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHTT--EEEEETTTEHHHHHHHH--------HSSEEEEEHHHHHH-HHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHhhhccccCccccCHHHHHHHH--------hCcccccccchhhH-HHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 4599999999988876655554 47899999998752 223333321 1124678999999999875
No 163
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.01 E-value=9.5e-08 Score=103.36 Aligned_cols=249 Identities=10% Similarity=0.103 Sum_probs=164.8
Q ss_pred CCccEEEeChhhhhchHHHHHH----HHhhhhcCCceEEEEeCccccc--ccCCC--------------chHHHHHHHHH
Q 035988 182 GELKMLYVTPEKISKSKRFMSK----LEKCHHAGRLSLISIDEAHCCS--QWGHD--------------FRPDYKNLGIL 241 (692)
Q Consensus 182 ~~~~Ili~Tpe~l~~~~~~~~~----l~~~~~~~~l~~iVIDEaH~l~--~~g~~--------------fr~~~~~l~~l 241 (692)
...||||++|=-|.. .+.. -...-.++.+.++|||.||.+. .|.|- ..-++.++...
T Consensus 130 y~SDIIiASPLGLr~---~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~~~~DfsRVR~w 206 (442)
T PF06862_consen 130 YSSDIIIASPLGLRM---IIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKSHDTDFSRVRPW 206 (442)
T ss_pred ccCCEEEEChHHHHH---HhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Confidence 378999999987642 1111 1123356789999999999876 34320 00111111110
Q ss_pred Hhh---CCCCCEEEEecccchhhHHHHHHHh-cccceEEEeccCCC-----------CcceEEEeecc--CcchHHH---
Q 035988 242 KTQ---FPDVPMMALTATATQKVQNDLMEML-HIRKCIKFVSTINR-----------PNLFYMVREKS--SVGKVVI--- 301 (692)
Q Consensus 242 ~~~---~~~~~~i~lSAT~~~~~~~~i~~~l-~~~~~~~~~~~~~r-----------~~l~~~v~~~~--~~~~~~~--- 301 (692)
.-. -.-+|+|++|+..+++....+.+.. +....+.+...... +..+..+.... ......+
T Consensus 207 ~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF 286 (442)
T PF06862_consen 207 YLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYF 286 (442)
T ss_pred HHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHH
Confidence 000 0125789999999999888887733 33333333222221 11222221111 1111222
Q ss_pred -HHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccc--cccc
Q 035988 302 -DEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVA--FGMG 378 (692)
Q Consensus 302 -~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~--~~~G 378 (692)
+.++.-+.. -...+.+|||++|.-+--.+...|++.++....+|-..+..+-.+.-..|..|+.+||+-|.= +=+=
T Consensus 287 ~~~iLP~l~~-~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrR 365 (442)
T PF06862_consen 287 TKKILPQLKR-DSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRR 365 (442)
T ss_pred HHHHHHHhhh-ccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhh
Confidence 223333331 126688999999999999999999999999999999999999999999999999999999973 3455
Q ss_pred cCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCC------CCeeEeecCCCCHHHHHHHHhhh
Q 035988 379 INKPDVRFVIHHSLSKSVETYYQESGRAGRDGL------PSECLLFFRPADVPRQSSMVFYE 434 (692)
Q Consensus 379 IDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~------~g~~i~l~~~~d~~~~~~l~~~~ 434 (692)
..+.+++.||.|++|..+.=|-..++-.+.... .+.|.++|+.-|.-++..++-.+
T Consensus 366 y~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIVGt~ 427 (442)
T PF06862_consen 366 YRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIVGTE 427 (442)
T ss_pred ceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHhCHH
Confidence 667889999999999998877777765554433 58999999999998888876443
No 164
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.01 E-value=3.7e-08 Score=119.33 Aligned_cols=119 Identities=13% Similarity=0.160 Sum_probs=102.6
Q ss_pred HHHHHHHHH-HHhCCCCC--ceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcC--CCcEEEeccc
Q 035988 300 VIDEIAKYI-QESYPNSE--SGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKN--KLQVIVGTVA 374 (692)
Q Consensus 300 ~~~~l~~~l-~~~~~~~~--~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g--~~~ILVaT~~ 374 (692)
+...+.+++ ......+. +++||++.......+...|+..++....++|+++.+.|...++.|.++ ..-++++|.+
T Consensus 693 k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~ka 772 (866)
T COG0553 693 KLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKA 772 (866)
T ss_pred HHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecc
Confidence 344455555 34444566 999999999999999999999998999999999999999999999986 3456778889
Q ss_pred cccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEee
Q 035988 375 FGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLF 418 (692)
Q Consensus 375 ~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l 418 (692)
.|.|+|....+.||++|..+++....|...|+.|.|+...+.++
T Consensus 773 gg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~ 816 (866)
T COG0553 773 GGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVY 816 (866)
T ss_pred cccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEE
Confidence 99999999999999999999999999999999999988665554
No 165
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.95 E-value=1.1e-09 Score=99.54 Aligned_cols=132 Identities=18% Similarity=0.190 Sum_probs=76.2
Q ss_pred CCCEEEEecCCChhHHHHHHH-----HHhcCCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhc
Q 035988 106 GRDVLVIMAAGGGKSLCYQLP-----AVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKG 180 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~lp-----al~~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~ 180 (692)
|+-.++-+.+|+|||--. +| ++.+..++||+.|||.++....+.|+..+ +.+- ...-... .
T Consensus 4 g~~~~~d~hpGaGKTr~v-lp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~~--~~~~-t~~~~~~--------~-- 69 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRV-LPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGLP--VRFH-TNARMRT--------H-- 69 (148)
T ss_dssp TEEEEEE--TTSSTTTTH-HHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTSS--EEEE-STTSS-------------
T ss_pred CceeEEecCCCCCCcccc-cHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcCC--cccC-ceeeecc--------c--
Confidence 445688999999999643 33 34567899999999999999999998664 2222 2221110 1
Q ss_pred CCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchh
Q 035988 181 EGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQK 260 (692)
Q Consensus 181 ~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~ 260 (692)
.+..-|-++|...+. .++.+.....++++||+||||....+.--++..+.. + .....+.+|++|||++..
T Consensus 70 ~g~~~i~vMc~at~~------~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~---~-~~~g~~~~i~mTATPPG~ 139 (148)
T PF07652_consen 70 FGSSIIDVMCHATYG------HFLLNPCRLKNYDVIIMDECHFTDPTSIAARGYLRE---L-AESGEAKVIFMTATPPGS 139 (148)
T ss_dssp -SSSSEEEEEHHHHH------HHHHTSSCTTS-SEEEECTTT--SHHHHHHHHHHHH---H-HHTTS-EEEEEESS-TT-
T ss_pred cCCCcccccccHHHH------HHhcCcccccCccEEEEeccccCCHHHHhhheeHHH---h-hhccCeeEEEEeCCCCCC
Confidence 125667778887553 223334456789999999999854333112222222 1 122356799999999865
Q ss_pred h
Q 035988 261 V 261 (692)
Q Consensus 261 ~ 261 (692)
.
T Consensus 140 ~ 140 (148)
T PF07652_consen 140 E 140 (148)
T ss_dssp -
T ss_pred C
Confidence 3
No 166
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.92 E-value=6.1e-09 Score=109.53 Aligned_cols=158 Identities=19% Similarity=0.189 Sum_probs=93.1
Q ss_pred HHHHHHHHHHc-------------CCCEEEEecCCChhHHHHHHHHH--hc-C-----CeEEEEcccHHHHHHHHHHHHH
Q 035988 95 NQQEIINAVLS-------------GRDVLVIMAAGGGKSLCYQLPAV--LR-E-----GIALVVSPLLSLIQDQVMCLAA 153 (692)
Q Consensus 95 ~Q~~ai~~il~-------------g~dviv~apTGsGKTl~~~lpal--~~-~-----~~~lvi~Pt~~L~~q~~~~l~~ 153 (692)
+|.+++..++. .+.+|+...+|+|||+..+.-+. .. . ..+|||+|. ++..++..++.+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~ 79 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEK 79 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcc
Confidence 57777777642 35689999999999987764433 11 1 259999999 888999999988
Q ss_pred cC----CCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhh--chHHHHHHHHhhhhcCCceEEEEeCccccccc
Q 035988 154 LG----IPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKIS--KSKRFMSKLEKCHHAGRLSLISIDEAHCCSQW 227 (692)
Q Consensus 154 ~g----i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~--~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~ 227 (692)
.. .++..+.+.... ...........+++++|++.+. ......+.+.. .++++|||||+|.+-..
T Consensus 80 ~~~~~~~~v~~~~~~~~~------~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~----~~~~~vIvDEaH~~k~~ 149 (299)
T PF00176_consen 80 WFDPDSLRVIIYDGDSER------RRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQ----IKWDRVIVDEAHRLKNK 149 (299)
T ss_dssp HSGT-TS-EEEESSSCHH------HHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHT----SEEEEEEETTGGGGTTT
T ss_pred cccccccccccccccccc------ccccccccccceeeecccccccccccccccccccc----ccceeEEEecccccccc
Confidence 74 445555544400 0111122347899999999886 11112222222 35999999999998543
Q ss_pred CCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhc
Q 035988 228 GHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLH 270 (692)
Q Consensus 228 g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~ 270 (692)
+. ..+. .+.. +.....+++||||......++...+.
T Consensus 150 ~s---~~~~---~l~~-l~~~~~~lLSgTP~~n~~~dl~~~l~ 185 (299)
T PF00176_consen 150 DS---KRYK---ALRK-LRARYRWLLSGTPIQNSLEDLYSLLR 185 (299)
T ss_dssp TS---HHHH---HHHC-CCECEEEEE-SS-SSSGSHHHHHHHH
T ss_pred cc---cccc---cccc-cccceEEeeccccccccccccccchh
Confidence 31 1111 2222 44556789999998776666655544
No 167
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=98.74 E-value=3.5e-07 Score=103.08 Aligned_cols=115 Identities=16% Similarity=0.084 Sum_probs=97.1
Q ss_pred HHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHC----------------------CCceeEeccCCCHHHHHHHHHHH
Q 035988 304 IAKYIQESYPNSESGIVYCFSRKECEQVAQELRQR----------------------GISADYYHADMDINAREKVHMRW 361 (692)
Q Consensus 304 l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~----------------------g~~v~~~h~~~~~~eR~~~~~~f 361 (692)
|+++|+..-.-|.+.|||..|......+-.+|... |....-+.|..+..+|....+.|
T Consensus 1131 LleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~F 1210 (1567)
T KOG1015|consen 1131 LLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEF 1210 (1567)
T ss_pred HHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHh
Confidence 45555544446899999999999998888888531 34556788999999999999999
Q ss_pred hcCC----CcEEEeccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEee
Q 035988 362 SKNK----LQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLF 418 (692)
Q Consensus 362 ~~g~----~~ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l 418 (692)
.+-. ...||+|.+.+.|||+-..+-||.||..+++.--.|-+=|+-|.|+..-||+|
T Consensus 1211 Ndp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1211 NDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred cCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 8632 33799999999999999999999999999999999999999999998888776
No 168
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.64 E-value=4.3e-09 Score=119.94 Aligned_cols=259 Identities=19% Similarity=0.217 Sum_probs=147.5
Q ss_pred CCCHHHHHHHHHHHc-CCCEEEEecCCChhHHHHHHHHHhc-----CCeEEEEcccHHHHHHHHHHHHH----cCCCEEE
Q 035988 91 AYRANQQEIINAVLS-GRDVLVIMAAGGGKSLCYQLPAVLR-----EGIALVVSPLLSLIQDQVMCLAA----LGIPAHM 160 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~-g~dviv~apTGsGKTl~~~lpal~~-----~~~~lvi~Pt~~L~~q~~~~l~~----~gi~~~~ 160 (692)
.+.|.|.+.+..... ..+.++.+|||+|||++|.+..... +.++++|+|..+|+..-.+.+.. -|+++.-
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie 1006 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIE 1006 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccCCceeEe
Confidence 455666665544332 4678999999999999998765532 47999999999998766655543 3888888
Q ss_pred EecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCccccccc-CCCchHHHHHHH
Q 035988 161 LTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQW-GHDFRPDYKNLG 239 (692)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~-g~~fr~~~~~l~ 239 (692)
++|....+-. .+. ..+++|+||++.....+- .++...+.+++++|+||.||+.+- |.-+.-......
T Consensus 1007 ~tgd~~pd~~-----~v~----~~~~~ittpek~dgi~Rs---w~~r~~v~~v~~iv~de~hllg~~rgPVle~ivsr~n 1074 (1230)
T KOG0952|consen 1007 LTGDVTPDVK-----AVR----EADIVITTPEKWDGISRS---WQTRKYVQSVSLIVLDEIHLLGEDRGPVLEVIVSRMN 1074 (1230)
T ss_pred ccCccCCChh-----hee----cCceEEcccccccCcccc---ccchhhhccccceeecccccccCCCcceEEEEeeccc
Confidence 8888776521 111 689999999988653331 223335578999999999998642 321111111100
Q ss_pred HHH-hhCCCCCEEEEecccchhhHHHHHHHhcccceEEEeccCCCCc-ceEEEeeccC-----cchHHHHHHHHHHHHhC
Q 035988 240 ILK-TQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPN-LFYMVREKSS-----VGKVVIDEIAKYIQESY 312 (692)
Q Consensus 240 ~l~-~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~-l~~~v~~~~~-----~~~~~~~~l~~~l~~~~ 312 (692)
... ...+.++.+++| |+.. ...++.++|+..+...+. ++-||+ +...+...+. ............++..
T Consensus 1075 ~~s~~t~~~vr~~gls-ta~~-na~dla~wl~~~~~~nf~-~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~- 1150 (1230)
T KOG0952|consen 1075 YISSQTEEPVRYLGLS-TALA-NANDLADWLNIKDMYNFR-PSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTH- 1150 (1230)
T ss_pred cCccccCcchhhhhHh-hhhh-ccHHHHHHhCCCCcCCCC-cccccCCceEeecCCCchhcchhhhhcccHHHHHHhcC-
Confidence 000 011223334333 2221 246788999987763222 222332 1111211111 0001112334445544
Q ss_pred CCCCceEEEEeccchHHHHHHHHHH----CCCceeEeccCCCHHHHHHHHHHHhcCCCc
Q 035988 313 PNSESGIVYCFSRKECEQVAQELRQ----RGISADYYHADMDINAREKVHMRWSKNKLQ 367 (692)
Q Consensus 313 ~~~~~~IIf~~s~~~~e~l~~~L~~----~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ 367 (692)
++..++|||+.++++...-+..|-. ..-+..+++.+ ..+-+.++..-++...+
T Consensus 1151 sp~~p~lifv~srrqtrlta~~li~~~~~~~~p~~fl~~d--e~e~e~~~~~~~d~~Lk 1207 (1230)
T KOG0952|consen 1151 SPIKPVLIFVSSRRQTRLTALDLIASCATEDNPKQFLNMD--ELELEIIMSKVRDTNLK 1207 (1230)
T ss_pred CCCCceEEEeecccccccchHhHHhhccCCCCchhccCCC--HHHHHHHHHHhcccchh
Confidence 4889999999998876555544432 22334445444 55556666655554433
No 169
>PRK10829 ribonuclease D; Provisional
Probab=98.64 E-value=1.1e-07 Score=101.91 Aligned_cols=71 Identities=15% Similarity=0.188 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCceEeccHHHHHHHHHcCCCChhhcchhhhhhc-ccchhhhhhhHHHHHHHHhhhc
Q 035988 574 SSALEFELDELRKELASISGGILPHSVLSSQLIRLISARKPSTMEEASSNHLEKI-IGKLKTGKYGSRILEVISKCGN 650 (692)
Q Consensus 574 ~~~l~~~l~~~r~~~a~~~~~~~~~~i~~~~~l~~~~~~~p~~~~~~~~~~l~~i-~g~~k~~~~g~~~l~~~~~~~~ 650 (692)
..+++.+|-.||.++|++ .++||+.|++|++|.+||.++|+|.++ |..+ +.+.-+.+||++++++|++..+
T Consensus 213 ~lavl~~L~~WRe~~Ar~-~d~p~~~Vl~d~~L~~lA~~~P~~~~~-----L~~~~~~~~~~r~~g~~ll~~i~~a~~ 284 (373)
T PRK10829 213 QLACLQLLADWRLRKARE-RDLAVNFVVREEHLWQVARYMPGSLGE-----LDSLGLSGSEIRFHGKTLLALVAKAQA 284 (373)
T ss_pred HHHHHHHHHHHHHHHHHH-hCCCcceecChHHHHHHHHhCCCCHHH-----HHhccCChHhHHhhHHHHHHHHHHHhc
Confidence 678999999999999998 899999999999999999999999999 9999 6677889999999999998864
No 170
>PF09382 RQC: RQC domain; InterPro: IPR018982 This entry represents the RQC domain, which is a DNA-binding domain found only in RecQ family enzymes. RecQ family helicases can unwind G4 DNA, and play important roles at G-rich domains of the genome, including the telomeres, rDNA, and immunoglobulin switch regions. This domain has a helix-turn-helix structure and acts as a high affinity G4 DNA binding domain []. Binding of RecQ to Holliday junctions involves both the RQC and the HRDC domains.; GO: 0043140 ATP-dependent 3'-5' DNA helicase activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1OYW_A 1OYY_A 3AAF_A 2AXL_A 2V1X_B 2WWY_B.
Probab=98.61 E-value=9.7e-08 Score=84.22 Aligned_cols=76 Identities=26% Similarity=0.423 Sum_probs=57.8
Q ss_pred chhHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhcc--------------cCCCcccCHHHHHHHHHHHHHcCccc----
Q 035988 477 VLAGHAQCIISLLQDIQDNNQRLTMLQLVDKMKIKL--------------KEIDSDLKREEIEQLVLQLIIDRVLV---- 538 (692)
Q Consensus 477 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~i~~l~~~~~l~---- 538 (692)
|+|.+|+.++++|.++ ++++|+.+++|+|+|+. .|.|+++++++|+++|++|+.+|||.
T Consensus 1 D~T~~a~~il~~V~~~---~~~~~~~~ivdvlrGs~~~~i~~~~~~~l~~yG~gk~~~~~~~~~li~~Li~~g~L~~~~~ 77 (106)
T PF09382_consen 1 DVTEEAKKILSCVQRL---KQRFGLSQIVDVLRGSKSKKIREKGHDQLPTYGIGKDMSKDDWERLIRQLILEGYLSEDNG 77 (106)
T ss_dssp E-HHHHHHHHHHHHHT---TT-S-HHHHHHHHTT-S-CCCHHTTGGGSTTTTTTTTS-HHHHHHHHHHHHHTTSEEEEEC
T ss_pred ChHHHHHHHHHHHHHH---hccccHHHHHHHHHhccchhhhhcCCCcCcccCCcccCCHHHHHHHHHHHHHcCCceecCC
Confidence 7899999999999875 56999999999999973 27899999999999999999999992
Q ss_pred -------ccc----ccCCCceeEEEEee
Q 035988 539 -------RIG----PFSPGKKIIKLEIS 555 (692)
Q Consensus 539 -------~~~----~~L~g~~~v~l~~~ 555 (692)
+.| .+|+|+.++.++++
T Consensus 78 ~~~~~~l~~~~~~~~~l~g~~~v~l~~~ 105 (106)
T PF09382_consen 78 GFAYPYLKLTPKGKELLNGKQKVELSED 105 (106)
T ss_dssp CCCTEEEEE-GGGHHHHCTTS--EEEEE
T ss_pred cccccEEEECHHHHHHHCCCceEEEEec
Confidence 111 25888888887764
No 171
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=2.9e-06 Score=90.91 Aligned_cols=341 Identities=15% Similarity=0.101 Sum_probs=199.4
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEecC-CChh--HHHHHHHHHhc----------------------------------CC
Q 035988 90 PAYRANQQEIINAVLSGRDVLVIMAA-GGGK--SLCYQLPAVLR----------------------------------EG 132 (692)
Q Consensus 90 ~~~r~~Q~~ai~~il~g~dviv~apT-GsGK--Tl~~~lpal~~----------------------------------~~ 132 (692)
..+++.|.+.+..+.+-+|++..-.| |.|+ +-.|.+-++.+ .+
T Consensus 215 ~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRp 294 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRP 294 (698)
T ss_pred CcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCc
Confidence 47899999999999999998753222 3344 34566655532 26
Q ss_pred eEEEEcccHHHHHHHHHHHHHc--CCCE---EE-----EecCCC------------hhHHHHH----------------H
Q 035988 133 IALVVSPLLSLIQDQVMCLAAL--GIPA---HM-----LTSTTS------------KEDEKFI----------------Y 174 (692)
Q Consensus 133 ~~lvi~Pt~~L~~q~~~~l~~~--gi~~---~~-----~~~~~~------------~~~~~~~----------------~ 174 (692)
++|||+|+|+-|-.++..+..+ |..- .+ +.+..+ +.+-..+ .
T Consensus 295 kVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftk 374 (698)
T KOG2340|consen 295 KVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTK 374 (698)
T ss_pred eEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHH
Confidence 8999999999999999988775 3211 01 111100 0000000 0
Q ss_pred --HHHHhcCCCccEEEeChhhhhchHHH-HHHHHhhhhcCCceEEEEeCcccccc--cCCCchHHHHHHHHHHhhCC---
Q 035988 175 --KALEKGEGELKMLYVTPEKISKSKRF-MSKLEKCHHAGRLSLISIDEAHCCSQ--WGHDFRPDYKNLGILKTQFP--- 246 (692)
Q Consensus 175 --~~l~~~~~~~~Ili~Tpe~l~~~~~~-~~~l~~~~~~~~l~~iVIDEaH~l~~--~g~~fr~~~~~l~~l~~~~~--- 246 (692)
-.+...-...||+||+|=-|.....- -+.-...-.++.+.++|||-||.+.. |.| ...-+.-+. ..|
T Consensus 375 KtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwEh----l~~ifdHLn-~~P~k~ 449 (698)
T KOG2340|consen 375 KTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWEH----LLHIFDHLN-LQPSKQ 449 (698)
T ss_pred HHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHHH----HHHHHHHhh-cCcccc
Confidence 01111123689999999766321000 00011222456789999999998763 332 111111111 111
Q ss_pred -------------------CCCEEEEecccchhhHHHHHHHhc-ccceEEEeccC---CCCcce---------EEEeecc
Q 035988 247 -------------------DVPMMALTATATQKVQNDLMEMLH-IRKCIKFVSTI---NRPNLF---------YMVREKS 294 (692)
Q Consensus 247 -------------------~~~~i~lSAT~~~~~~~~i~~~l~-~~~~~~~~~~~---~r~~l~---------~~v~~~~ 294 (692)
-.|+++||+--.+.....+..... +...+....-. .-.++- ..+....
T Consensus 450 h~~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~ 529 (698)
T KOG2340|consen 450 HDVDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSII 529 (698)
T ss_pred cCCChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcc
Confidence 124556666655554444433221 11111111100 111111 1111111
Q ss_pred CcchHHHHHHHHHHHHhC-C-CCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEec
Q 035988 295 SVGKVVIDEIAKYIQESY-P-NSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGT 372 (692)
Q Consensus 295 ~~~~~~~~~l~~~l~~~~-~-~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT 372 (692)
......+.....-|.-.+ . ....+|||.+|.-+--.+-.++++.++.-..+|--.+...-.+.-+-|-.|...||+-|
T Consensus 530 ~~~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyT 609 (698)
T KOG2340|consen 530 ETPDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYT 609 (698)
T ss_pred cCchHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEe
Confidence 111222333333332221 1 23456999999999999999999998887777777777777777788999999999998
Q ss_pred cc--cccccCCCCccEEEEeCCCCCHH---HHHHHHhhcCCCC----CCCeeEeecCCCCHHHHHHHHhhhh
Q 035988 373 VA--FGMGINKPDVRFVIHHSLSKSVE---TYYQESGRAGRDG----LPSECLLFFRPADVPRQSSMVFYEN 435 (692)
Q Consensus 373 ~~--~~~GIDip~v~~VI~~~~P~s~~---~y~Qr~GRagR~G----~~g~~i~l~~~~d~~~~~~l~~~~~ 435 (692)
.- +=+-.++.+|+.||.|.+|..+. +++.+.+|+.-.| ....|.++|++-|.-.+..++-.++
T Consensus 610 ER~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~ivGter 681 (698)
T KOG2340|consen 610 ERAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIVGTER 681 (698)
T ss_pred hhhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhhhHHH
Confidence 74 56778999999999999999875 4466777775333 3478999999999888887765553
No 172
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.51 E-value=7.9e-07 Score=92.93 Aligned_cols=90 Identities=18% Similarity=0.125 Sum_probs=67.2
Q ss_pred cCCCCCCHHHHHH----HHHHHcCCCEEEEecCCChhHHHHHHHHHh----cCC-----eEEEEcccHHHHHHHHHHHHH
Q 035988 87 FGIPAYRANQQEI----INAVLSGRDVLVIMAAGGGKSLCYQLPAVL----REG-----IALVVSPLLSLIQDQVMCLAA 153 (692)
Q Consensus 87 fg~~~~r~~Q~~a----i~~il~g~dviv~apTGsGKTl~~~lpal~----~~~-----~~lvi~Pt~~L~~q~~~~l~~ 153 (692)
|+|. +||.|.+. +..+..|.++++.||||+|||++|++|++. .+. +++|.++|.++.+|....+++
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 7885 69999994 445557899999999999999999999973 233 799999999999999888887
Q ss_pred cCCCEEEEecCCChhHHHHHHHHHH
Q 035988 154 LGIPAHMLTSTTSKEDEKFIYKALE 178 (692)
Q Consensus 154 ~gi~~~~~~~~~~~~~~~~~~~~l~ 178 (692)
...... +.++-+..+......++.
T Consensus 84 ~~~~~~-~~~~~t~sq~~q~~~el~ 107 (289)
T smart00489 84 LMQKVE-YESDEESEKQAQLLHELG 107 (289)
T ss_pred cccccc-eecccchhHHHHHHHHHh
Confidence 743332 333344445555555554
No 173
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.51 E-value=7.9e-07 Score=92.93 Aligned_cols=90 Identities=18% Similarity=0.125 Sum_probs=67.2
Q ss_pred cCCCCCCHHHHHH----HHHHHcCCCEEEEecCCChhHHHHHHHHHh----cCC-----eEEEEcccHHHHHHHHHHHHH
Q 035988 87 FGIPAYRANQQEI----INAVLSGRDVLVIMAAGGGKSLCYQLPAVL----REG-----IALVVSPLLSLIQDQVMCLAA 153 (692)
Q Consensus 87 fg~~~~r~~Q~~a----i~~il~g~dviv~apTGsGKTl~~~lpal~----~~~-----~~lvi~Pt~~L~~q~~~~l~~ 153 (692)
|+|. +||.|.+. +..+..|.++++.||||+|||++|++|++. .+. +++|.++|.++.+|....+++
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 7885 69999994 445557899999999999999999999973 233 799999999999999888887
Q ss_pred cCCCEEEEecCCChhHHHHHHHHHH
Q 035988 154 LGIPAHMLTSTTSKEDEKFIYKALE 178 (692)
Q Consensus 154 ~gi~~~~~~~~~~~~~~~~~~~~l~ 178 (692)
...... +.++-+..+......++.
T Consensus 84 ~~~~~~-~~~~~t~sq~~q~~~el~ 107 (289)
T smart00488 84 LMQKVE-YESDEESEKQAQLLHELG 107 (289)
T ss_pred cccccc-eecccchhHHHHHHHHHh
Confidence 743332 333344445555555554
No 174
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.34 E-value=4.5e-06 Score=94.15 Aligned_cols=295 Identities=19% Similarity=0.195 Sum_probs=176.5
Q ss_pred HHHHHHHHcCCCEEEEecCCChhHHH---HHHHHHhcC-----CeEEEEcccHHHHHHHHHHHHHc-----CCCEEE---
Q 035988 97 QEIINAVLSGRDVLVIMAAGGGKSLC---YQLPAVLRE-----GIALVVSPLLSLIQDQVMCLAAL-----GIPAHM--- 160 (692)
Q Consensus 97 ~~ai~~il~g~dviv~apTGsGKTl~---~~lpal~~~-----~~~lvi~Pt~~L~~q~~~~l~~~-----gi~~~~--- 160 (692)
..++.++..++-+++-+.||.|||.- |+|-++... ..+.+.-|++-.+.-..+++..- |-.+..
T Consensus 384 ~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vR 463 (1282)
T KOG0921|consen 384 SEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVR 463 (1282)
T ss_pred HHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhccccccccc
Confidence 44566666677789999999999964 455555443 24566678776666655554432 211111
Q ss_pred EecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHH
Q 035988 161 LTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGI 240 (692)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~ 240 (692)
..+..+. +.--|++||-+-+.. . +.+ .+..+.++++||.|...-.+ +|-..+.+ .
T Consensus 464 f~Sa~pr--------------pyg~i~fctvgvllr---~---~e~--glrg~sh~i~deiherdv~~-dfll~~lr--~ 518 (1282)
T KOG0921|consen 464 FDSATPR--------------PYGSIMFCTVGVLLR---M---MEN--GLRGISHVIIDEIHERDVDT-DFVLIVLR--E 518 (1282)
T ss_pred ccccccc--------------cccceeeeccchhhh---h---hhh--cccccccccchhhhhhccch-HHHHHHHH--h
Confidence 1111111 134678888886642 2 222 23578899999999854322 34333322 5
Q ss_pred HHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEE----------------------eccCCCC--------------
Q 035988 241 LKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKF----------------------VSTINRP-------------- 284 (692)
Q Consensus 241 l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~----------------------~~~~~r~-------------- 284 (692)
++..+++..++++|||..-... ..+++.-..... .+...+.
T Consensus 519 m~~ty~dl~v~lmsatIdTd~f---~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~d 595 (1282)
T KOG0921|consen 519 MISTYRDLRVVLMSATIDTDLF---TNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVD 595 (1282)
T ss_pred hhccchhhhhhhhhcccchhhh---hhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhh
Confidence 5556667777777777653222 222221110000 0000000
Q ss_pred ----cceEEEeecc--------------CcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHC-------C
Q 035988 285 ----NLFYMVREKS--------------SVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQR-------G 339 (692)
Q Consensus 285 ----~l~~~v~~~~--------------~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~-------g 339 (692)
|......+.. .....+.+.+..++... .-.+-++||.+--...-.|..+|... .
T Consensus 596 dK~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~-~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~ 674 (1282)
T KOG0921|consen 596 DKGRNMNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASR-NIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANK 674 (1282)
T ss_pred hcccccccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhccc-CCccceeeecCchHHhhhhhhhhhhhhhhccchh
Confidence 0000000000 00012233344444322 13466788888888888888887653 4
Q ss_pred CceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEEeCCC------------------CCHHHHHH
Q 035988 340 ISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLS------------------KSVETYYQ 401 (692)
Q Consensus 340 ~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~~P------------------~s~~~y~Q 401 (692)
+.+...|+.+...+...+.+....|..++++.|.....-|.+-++.+||..+.- .|..+..|
T Consensus 675 y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eq 754 (1282)
T KOG0921|consen 675 YEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQ 754 (1282)
T ss_pred cccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHh
Confidence 568889999998888899888888999999999999999999998888865543 26678899
Q ss_pred HHhhcCCCCCCCeeEeecCC
Q 035988 402 ESGRAGRDGLPSECLLFFRP 421 (692)
Q Consensus 402 r~GRagR~G~~g~~i~l~~~ 421 (692)
+.||+||. ++|.|..+.+.
T Consensus 755 r~gr~grv-R~G~~f~lcs~ 773 (1282)
T KOG0921|consen 755 RKGRAGRV-RPGFCFHLCSR 773 (1282)
T ss_pred hcccCcee-cccccccccHH
Confidence 99999987 57888777654
No 175
>TIGR01388 rnd ribonuclease D. This model describes ribonuclease D, a 3'-exonuclease shown to act on tRNA both in vitro and when overexpressed in vivo. Trusted members of this family are restricted to the Proteobacteria; Aquifex, Mycobacterial, and eukaryotic homologs are not full-length homologs. Ribonuclease D is not essential in E. coli and is deleterious when overexpressed. Its precise biological role is still unknown.
Probab=98.26 E-value=2.2e-06 Score=92.51 Aligned_cols=71 Identities=17% Similarity=0.194 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCceEeccHHHHHHHHHcCCCChhhcchhhhhhc-ccchhhhhhhHHHHHHHHhhhc
Q 035988 574 SSALEFELDELRKELASISGGILPHSVLSSQLIRLISARKPSTMEEASSNHLEKI-IGKLKTGKYGSRILEVISKCGN 650 (692)
Q Consensus 574 ~~~l~~~l~~~r~~~a~~~~~~~~~~i~~~~~l~~~~~~~p~~~~~~~~~~l~~i-~g~~k~~~~g~~~l~~~~~~~~ 650 (692)
..+++.+|-.||.++|++ .++||+.|++|..|.+||.+.|+|.++ |..+ +-+..+.+||++++++|+...+
T Consensus 209 ~l~~l~~L~~wRe~~A~~-~d~p~~~il~d~~l~~lA~~~P~~~~~-----l~~~~~~~~~~r~~~~~l~~~i~~a~~ 280 (367)
T TIGR01388 209 QLAVLQALAAWREREARE-RDLPRNFVLKEEALWELARQAPGNLTE-----LASLGPKGSEIRKHGDTLLALVKTALA 280 (367)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCCcceeeCHHHHHHHHHhCCCCHHH-----HHhccCChHHHHhhHHHHHHHHHHHhh
Confidence 678999999999999999 899999999999999999999999999 9998 5567889999999999998864
No 176
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.23 E-value=1.4e-05 Score=93.92 Aligned_cols=45 Identities=22% Similarity=0.209 Sum_probs=42.0
Q ss_pred CCcEEEeccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCC
Q 035988 365 KLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRD 409 (692)
Q Consensus 365 ~~~ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~ 409 (692)
..+.+++-.++.+|.|.|++-.+.-..-..|...-.|.+||.-|.
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~ 545 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRL 545 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceec
Confidence 578999999999999999999999999999999999999999884
No 177
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.14 E-value=6.2e-05 Score=88.34 Aligned_cols=68 Identities=10% Similarity=0.050 Sum_probs=46.4
Q ss_pred CccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccch
Q 035988 183 ELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQ 259 (692)
Q Consensus 183 ~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~ 259 (692)
...|+++||..+. .+.+.+...+..++.+||||||++.... ...+ -+..++...+..-+.+|||+|..
T Consensus 7 ~ggi~~~T~rIl~-----~DlL~~ri~~~~itgiiv~~Ahr~~~~~---~eaF-I~rlyr~~n~~gfIkafSdsP~~ 74 (814)
T TIGR00596 7 EGGIFSITSRILV-----VDLLTGIIPPELITGILVLRADRIIESS---QEAF-ILRLYRQKNKTGFIKAFSDNPEA 74 (814)
T ss_pred cCCEEEEechhhH-----hHHhcCCCCHHHccEEEEeecccccccc---cHHH-HHHHHHHhCCCcceEEecCCCcc
Confidence 4589999999874 4567777788899999999999986322 1111 11234444444456788888754
No 178
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.12 E-value=1.1e-05 Score=81.25 Aligned_cols=62 Identities=26% Similarity=0.306 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHcCCC-EEEEecCCChhHH--HHHHHHH---------hcCCeEEEEcccHHHHHHHHHHHHH
Q 035988 92 YRANQQEIINAVLSGRD-VLVIMAAGGGKSL--CYQLPAV---------LREGIALVVSPLLSLIQDQVMCLAA 153 (692)
Q Consensus 92 ~r~~Q~~ai~~il~g~d-viv~apTGsGKTl--~~~lpal---------~~~~~~lvi~Pt~~L~~q~~~~l~~ 153 (692)
+.+.|.+|+..++.... .++.||+|+|||. +.++-.+ ..+.++|+++|+..-+.+....+.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 67899999999999998 9999999999993 3333333 3357999999999999999999888
No 179
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=98.02 E-value=3.5e-05 Score=89.09 Aligned_cols=123 Identities=15% Similarity=0.191 Sum_probs=104.7
Q ss_pred HHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCC--CcEEEeccccccc
Q 035988 301 IDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNK--LQVIVGTVAFGMG 378 (692)
Q Consensus 301 ~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~--~~ILVaT~~~~~G 378 (692)
++.|.-++++....+.++|||+.-.+..+-|-..|.-+|+.-.-+.|..+-++|...+++|..+. ...|++|-.-|.|
T Consensus 1262 LQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvG 1341 (1958)
T KOG0391|consen 1262 LQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVG 1341 (1958)
T ss_pred HHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccc
Confidence 45555556666668999999999999999999999999999999999999999999999999876 4578899999999
Q ss_pred cCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCee--EeecCCCC
Q 035988 379 INKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSEC--LLFFRPAD 423 (692)
Q Consensus 379 IDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~--i~l~~~~d 423 (692)
||+.+.+.||+||..+++..-.|.--|+.|.|+.-.+ |-|++..-
T Consensus 1342 iNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~T 1388 (1958)
T KOG0391|consen 1342 INLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERT 1388 (1958)
T ss_pred cccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccch
Confidence 9999999999999999988888888888888876544 44455443
No 180
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.99 E-value=1.3e-05 Score=76.82 Aligned_cols=104 Identities=18% Similarity=0.273 Sum_probs=72.0
Q ss_pred CCCceEEEEeccchHHHHHHHHHHCCC--ceeEeccCCCHHHHHHHHHHHhcCCCcEEEecc--ccccccCCCC--ccEE
Q 035988 314 NSESGIVYCFSRKECEQVAQELRQRGI--SADYYHADMDINAREKVHMRWSKNKLQVIVGTV--AFGMGINKPD--VRFV 387 (692)
Q Consensus 314 ~~~~~IIf~~s~~~~e~l~~~L~~~g~--~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~--~~~~GIDip~--v~~V 387 (692)
.++.++||++|.+..+.+.+.++..+. ...++.. +..++..+++.|+.++-.||+|+. .+.+|||+|+ ++.|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~v 85 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAV 85 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhee
Confidence 468999999999999999999986532 1223332 356789999999999999999999 9999999997 7789
Q ss_pred EEeCCCC----C--------------------------HHHHHHHHhhcCCCCCCCeeEeec
Q 035988 388 IHHSLSK----S--------------------------VETYYQESGRAGRDGLPSECLLFF 419 (692)
Q Consensus 388 I~~~~P~----s--------------------------~~~y~Qr~GRagR~G~~g~~i~l~ 419 (692)
|..++|. + +....|.+||+-|...+--+++++
T Consensus 86 ii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~ll 147 (167)
T PF13307_consen 86 IIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILL 147 (167)
T ss_dssp EEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEE
T ss_pred eecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEE
Confidence 9999984 1 123458899999987663333443
No 181
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=97.85 E-value=5e-05 Score=87.92 Aligned_cols=165 Identities=17% Similarity=0.188 Sum_probs=105.1
Q ss_pred CCCHHHHHHHHHHHc----CCCEEEEecCCChhHHHH--HHHHH-hcC---CeEEEEcccHHHHHHHHHHHHHc--CCCE
Q 035988 91 AYRANQQEIINAVLS----GRDVLVIMAAGGGKSLCY--QLPAV-LRE---GIALVVSPLLSLIQDQVMCLAAL--GIPA 158 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~----g~dviv~apTGsGKTl~~--~lpal-~~~---~~~lvi~Pt~~L~~q~~~~l~~~--gi~~ 158 (692)
.+|.||..-++++.. +-+.|+.-..|-|||+-. ++.-+ +.. |.-|||+||--+.+ |.-+|++. |+++
T Consensus 615 qLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLn-WEMElKRwcPglKI 693 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILN-WEMELKRWCPGLKI 693 (1958)
T ss_pred HHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhh-hhHHHhhhCCcceE
Confidence 688999999888753 567899999999999632 22222 222 67899999966655 46667776 6777
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHH
Q 035988 159 HMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNL 238 (692)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l 238 (692)
..+.|... ++......+.. .+.++|.|+++..+.... ..+...+|.++|+||||++-.|-..-+.
T Consensus 694 LTYyGs~k--ErkeKRqgW~k-PnaFHVCItSYklv~qd~-------~AFkrkrWqyLvLDEaqnIKnfksqrWQ----- 758 (1958)
T KOG0391|consen 694 LTYYGSHK--ERKEKRQGWAK-PNAFHVCITSYKLVFQDL-------TAFKRKRWQYLVLDEAQNIKNFKSQRWQ----- 758 (1958)
T ss_pred eeecCCHH--HHHHHhhcccC-CCeeEEeehhhHHHHhHH-------HHHHhhccceeehhhhhhhcchhHHHHH-----
Confidence 66666542 22222222221 236788898888664321 1223358999999999999775532111
Q ss_pred HHHHhhCCCCCEEEEecccchhhHHHHHHHhcccc
Q 035988 239 GILKTQFPDVPMMALTATATQKVQNDLMEMLHIRK 273 (692)
Q Consensus 239 ~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~ 273 (692)
.+.. |...+.++||.|+-.+..-.+...+.+-.
T Consensus 759 -Alln-fnsqrRLLLtgTPLqNslmELWSLmhFLm 791 (1958)
T KOG0391|consen 759 -ALLN-FNSQRRLLLTGTPLQNSLMELWSLMHFLM 791 (1958)
T ss_pred -HHhc-cchhheeeecCCchhhHHHHHHHHHHHhh
Confidence 2222 33446789999997776666655555433
No 182
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.82 E-value=0.00015 Score=79.90 Aligned_cols=78 Identities=23% Similarity=0.309 Sum_probs=67.3
Q ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHH-----HHHHHHhcCCeEEEEcccHHHHHHHHHHHHHcCCCEEE
Q 035988 86 VFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLC-----YQLPAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHM 160 (692)
Q Consensus 86 ~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~-----~~lpal~~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~ 160 (692)
.+|++.+..-|..|+.++|+..-.|+++|+|+|||.+ |.+. -.+.+.+||++|+.--+.|..+.+.+.|+++.-
T Consensus 405 ~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~-~~~~~~VLvcApSNiAVDqLaeKIh~tgLKVvR 483 (935)
T KOG1802|consen 405 VPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLA-RQHAGPVLVCAPSNIAVDQLAEKIHKTGLKVVR 483 (935)
T ss_pred CCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHH-HhcCCceEEEcccchhHHHHHHHHHhcCceEee
Confidence 5789999999999999999999999999999999964 3331 235789999999999999999999999998887
Q ss_pred EecC
Q 035988 161 LTST 164 (692)
Q Consensus 161 ~~~~ 164 (692)
+.+-
T Consensus 484 l~ak 487 (935)
T KOG1802|consen 484 LCAK 487 (935)
T ss_pred eehh
Confidence 6654
No 183
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.81 E-value=0.00012 Score=75.08 Aligned_cols=163 Identities=17% Similarity=0.082 Sum_probs=99.5
Q ss_pred CCCHHHHHHHHHHHc----------CCCEEEEecCCChhHHH--HH-HHHHhcCC-eEEEEcccHHHHHHHHHHHHHcCC
Q 035988 91 AYRANQQEIINAVLS----------GRDVLVIMAAGGGKSLC--YQ-LPAVLREG-IALVVSPLLSLIQDQVMCLAALGI 156 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~----------g~dviv~apTGsGKTl~--~~-lpal~~~~-~~lvi~Pt~~L~~q~~~~l~~~gi 156 (692)
.+...|.+++-.+.+ ....++--.||.||--. .+ +-..+++. ++|+++.+..|..|..+.++..|.
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~Da~RDl~DIG~ 116 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYDAERDLRDIGA 116 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhHHHHHHHHhCC
Confidence 467889887655432 24577888999999842 22 22234554 699999999999999999999875
Q ss_pred CEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchH--------HHHHHHHhhhhcCCceEEEEeCcccccccC
Q 035988 157 PAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSK--------RFMSKLEKCHHAGRLSLISIDEAHCCSQWG 228 (692)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~--------~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g 228 (692)
....+..-..... ... ..-.-.|+++|+..|.... ++...+... .-..=.+||+||||..-...
T Consensus 117 ~~i~v~~l~~~~~-----~~~--~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~-g~dfdgvivfDEcH~akn~~ 188 (303)
T PF13872_consen 117 DNIPVHPLNKFKY-----GDI--IRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWC-GEDFDGVIVFDECHKAKNLS 188 (303)
T ss_pred Ccccceechhhcc-----CcC--CCCCCCccchhHHHHHhHHhccCCccchHHHHHHHH-hcCCCceEEeccchhcCCCC
Confidence 4322222111100 000 0114579999999876431 222222111 11234689999999976432
Q ss_pred CC---chHHHHHHHHHHhhCCCCCEEEEecccchhh
Q 035988 229 HD---FRPDYKNLGILKTQFPDVPMMALTATATQKV 261 (692)
Q Consensus 229 ~~---fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~ 261 (692)
.. -...-.....+...+|+.+++..|||...+.
T Consensus 189 ~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgasep 224 (303)
T PF13872_consen 189 SGSKKPSKTGIAVLELQNRLPNARVVYASATGASEP 224 (303)
T ss_pred ccCccccHHHHHHHHHHHhCCCCcEEEecccccCCC
Confidence 11 1112223345778899999999999987543
No 184
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.69 E-value=0.00052 Score=78.14 Aligned_cols=46 Identities=28% Similarity=0.254 Sum_probs=42.7
Q ss_pred CCCcEEEeccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCC
Q 035988 364 NKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRD 409 (692)
Q Consensus 364 g~~~ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~ 409 (692)
...+.+.+--++-+|.|=|+|=.++-.....|..+=.|++||+-|-
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRL 527 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRL 527 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceee
Confidence 3478999999999999999999999999999999999999999984
No 185
>COG0349 Rnd Ribonuclease D [Translation, ribosomal structure and biogenesis]
Probab=97.65 E-value=0.0003 Score=73.85 Aligned_cols=98 Identities=16% Similarity=0.143 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCceEeccHHHHHHHHHcCCCChhhcchhhhhhc-ccchhhhhhhHHHHHHHHhhhccC
Q 035988 574 SSALEFELDELRKELASISGGILPHSVLSSQLIRLISARKPSTMEEASSNHLEKI-IGKLKTGKYGSRILEVISKCGNSE 652 (692)
Q Consensus 574 ~~~l~~~l~~~r~~~a~~~~~~~~~~i~~~~~l~~~~~~~p~~~~~~~~~~l~~i-~g~~k~~~~g~~~l~~~~~~~~~~ 652 (692)
..+....|-.||.+.|++ .++|+-.|+.|+.|.++|...|.+..+ |..+ ..+.-..++|..++.+|++..+..
T Consensus 209 ~la~l~~La~wRe~~Ar~-rd~~~~~vl~de~i~~~a~~~P~~~~~-----l~~l~~~~~~~~~~~~~l~~~~~~a~~~p 282 (361)
T COG0349 209 ELAVLRELAAWREREARE-RDLARNFVLKDEALWELARYTPKNLKE-----LDALGLIPKERRRHGKLLLALLANALASP 282 (361)
T ss_pred HHHHHHHHHHHHHHHHHH-hccccccccchhHHHHHHHhCCCCHHH-----HHhccCCcccchhhhHHHHHHHHHHHhCc
Confidence 678899999999999999 899999999999999999999999999 9999 333388899999999998886433
Q ss_pred CCCCCcccccc-ccccchhhhhhhcc
Q 035988 653 QQHDNNAVSKE-EQGRDARASKRTKK 677 (692)
Q Consensus 653 ~~~~~~~~~~~-~~~~~~~~~~~~~~ 677 (692)
.-..|+.+.+- .+++..+..|++|.
T Consensus 283 ~~~~p~~~~~~~~~p~~~~~~~~lk~ 308 (361)
T COG0349 283 ESDLPPPPGRLAPPPGYKAALKALKA 308 (361)
T ss_pred hhhCCCCCcccCCChhHHHHHHHHHH
Confidence 32222222222 12456666666653
No 186
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=97.59 E-value=0.017 Score=65.08 Aligned_cols=151 Identities=14% Similarity=0.070 Sum_probs=109.3
Q ss_pred CCCceEEEEeccchHHHHHHHHHHCCCc------------------eeEeccCCCHHHHHHHHHHHhcCC---CcEEEec
Q 035988 314 NSESGIVYCFSRKECEQVAQELRQRGIS------------------ADYYHADMDINAREKVHMRWSKNK---LQVIVGT 372 (692)
Q Consensus 314 ~~~~~IIf~~s~~~~e~l~~~L~~~g~~------------------v~~~h~~~~~~eR~~~~~~f~~g~---~~ILVaT 372 (692)
-+.++|||..+......+.+.|.+..++ -.-+.|..+..+|+..+++|.+.- .-++++|
T Consensus 718 ~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllst 797 (1387)
T KOG1016|consen 718 IGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLST 797 (1387)
T ss_pred cCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehh
Confidence 5678899999999999998888765332 224577788899999999998642 3578899
Q ss_pred cccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHHHHHHHHhhhhhhhHhHHHHHHHhcCCc
Q 035988 373 VAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFYENSGLQNLYDIVRYSQYPL 452 (692)
Q Consensus 373 ~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~~~~l~~~~~~~~~~l~~~~~~~~~~~ 452 (692)
.+...|||+-..+-+|.++..++..--.|.+-|.-|-|+..-|++|----|...-+++....-....+-.++++-|+...
T Consensus 798 rag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydRQIsKqGmsdRvVDd~np~a 877 (1387)
T KOG1016|consen 798 RAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDRQISKQGMSDRVVDDANPDA 877 (1387)
T ss_pred ccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHHHHhhccchhhhhcccCccc
Confidence 99999999987778888888888888899999999999999999886655554444443333222334456677666444
Q ss_pred cchHHH---HHhhhC
Q 035988 453 HWNIEK---VRLVIF 464 (692)
Q Consensus 453 ~crr~~---ll~~f~ 464 (692)
...++- |+.|++
T Consensus 878 n~s~Ke~enLl~~~e 892 (1387)
T KOG1016|consen 878 NISQKELENLLMYDE 892 (1387)
T ss_pred cccHHHHHHHhhhhh
Confidence 343432 344444
No 187
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.55 E-value=0.00093 Score=77.41 Aligned_cols=75 Identities=23% Similarity=0.194 Sum_probs=59.4
Q ss_pred CCCCHHHHHHHHHHHcC-CCEEEEecCCChhHHHHH--HH-HHhcCCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecC
Q 035988 90 PAYRANQQEIINAVLSG-RDVLVIMAAGGGKSLCYQ--LP-AVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTST 164 (692)
Q Consensus 90 ~~~r~~Q~~ai~~il~g-~dviv~apTGsGKTl~~~--lp-al~~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~ 164 (692)
..+.+.|.+|+..++.. ..+++.+|+|+|||.+.. +- ++..+.++|+++||..-+.+..+.+...++++.-+.+.
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~~~~~vvRlg~~ 234 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLALCDQKIVRLGHP 234 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHhCCCcEEEeCCc
Confidence 46899999999999987 568899999999995432 22 23457799999999999999999999877666555433
No 188
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.38 E-value=0.00081 Score=74.15 Aligned_cols=63 Identities=17% Similarity=0.252 Sum_probs=51.8
Q ss_pred CCCCHHHHHHHHHHHcCCC-EEEEecCCChhHHHHH---HHHHhcCCeEEEEcccHHHHHHHHHHHH
Q 035988 90 PAYRANQQEIINAVLSGRD-VLVIMAAGGGKSLCYQ---LPAVLREGIALVVSPLLSLIQDQVMCLA 152 (692)
Q Consensus 90 ~~~r~~Q~~ai~~il~g~d-viv~apTGsGKTl~~~---lpal~~~~~~lvi~Pt~~L~~q~~~~l~ 152 (692)
..+.+-|.+|+....+.++ .++.+|+|+|||.+-. .-++.++.++||+.||..-+..+++++.
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCchHHHHHHHHHhc
Confidence 3788999999999998866 6899999999996543 2245668999999999999999888754
No 189
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.34 E-value=0.0012 Score=64.89 Aligned_cols=60 Identities=17% Similarity=0.166 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHHHHcCC--CEEEEecCCChhHHHHH--HHHHh-cCCeEEEEcccHHHHHHHHHH
Q 035988 91 AYRANQQEIINAVLSGR--DVLVIMAAGGGKSLCYQ--LPAVL-REGIALVVSPLLSLIQDQVMC 150 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~g~--dviv~apTGsGKTl~~~--lpal~-~~~~~lvi~Pt~~L~~q~~~~ 150 (692)
++++.|.+++..++.+. -.++.+|.|+|||.+.. .-++. .+..+++++||...+....+.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHh
Confidence 36899999999998654 36788999999997532 11222 357899999998887774444
No 190
>PF13245 AAA_19: Part of AAA domain
Probab=97.31 E-value=0.0007 Score=55.58 Aligned_cols=53 Identities=21% Similarity=0.288 Sum_probs=37.3
Q ss_pred HHHHHHcCCC-EEEEecCCChhHHHHH--HHHHh-c----CCeEEEEcccHHHHHHHHHHH
Q 035988 99 IINAVLSGRD-VLVIMAAGGGKSLCYQ--LPAVL-R----EGIALVVSPLLSLIQDQVMCL 151 (692)
Q Consensus 99 ai~~il~g~d-viv~apTGsGKTl~~~--lpal~-~----~~~~lvi~Pt~~L~~q~~~~l 151 (692)
+|...+.+.. +++.+|+|+|||.+.. +..+. . +..++|++|++..+.+..+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 4553444444 5569999999994432 22222 1 678999999999999988888
No 191
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.30 E-value=0.0008 Score=76.98 Aligned_cols=69 Identities=22% Similarity=0.164 Sum_probs=50.0
Q ss_pred hcCCCCCCHHHHHHHHHHH----cCCCEEEEecCCChhHHHHHHHHH---hc----------------------------
Q 035988 86 VFGIPAYRANQQEIINAVL----SGRDVLVIMAAGGGKSLCYQLPAV---LR---------------------------- 130 (692)
Q Consensus 86 ~fg~~~~r~~Q~~ai~~il----~g~dviv~apTGsGKTl~~~lpal---~~---------------------------- 130 (692)
.|+| .|+|.|...+..++ .+.+.++..|||+|||++-+-..+ .+
T Consensus 17 ~fP~-qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~ 95 (945)
T KOG1132|consen 17 EFPF-QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGE 95 (945)
T ss_pred eccC-CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCC
Confidence 3677 67999998666665 467899999999999987652222 10
Q ss_pred --------------CCeEEEEcccHHHHHHHHHHHHHcC
Q 035988 131 --------------EGIALVVSPLLSLIQDQVMCLAALG 155 (692)
Q Consensus 131 --------------~~~~lvi~Pt~~L~~q~~~~l~~~g 155 (692)
.+++++-+-|.+-+.|.++++++.+
T Consensus 96 ~s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~ 134 (945)
T KOG1132|consen 96 KSEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTG 134 (945)
T ss_pred chhhhcCccccccCCceEEEecchHHHHHHHHHHHhhcC
Confidence 1245666667777899999999864
No 192
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.29 E-value=0.00086 Score=65.91 Aligned_cols=53 Identities=21% Similarity=0.239 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHh---cC--CeEEEEcccHHH
Q 035988 91 AYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVL---RE--GIALVVSPLLSL 143 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~---~~--~~~lvi~Pt~~L 143 (692)
..++.|..++++++...-+++.+|.|+|||+.++..++. .+ .+.+++-|..+.
T Consensus 4 p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 4 PKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEA 61 (205)
T ss_dssp --SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--T
T ss_pred CCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCC
Confidence 467899999999998888999999999999987765542 22 477888887654
No 193
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=97.24 E-value=0.002 Score=69.59 Aligned_cols=68 Identities=18% Similarity=0.140 Sum_probs=46.2
Q ss_pred hcCCCCCCHHHHHHHHHH----HcCCCEEEEecCCChhHHHHHHH--HHh-c----CCeEEEEcccHHHHHHHHHHHHH
Q 035988 86 VFGIPAYRANQQEIINAV----LSGRDVLVIMAAGGGKSLCYQLP--AVL-R----EGIALVVSPLLSLIQDQVMCLAA 153 (692)
Q Consensus 86 ~fg~~~~r~~Q~~ai~~i----l~g~dviv~apTGsGKTl~~~lp--al~-~----~~~~lvi~Pt~~L~~q~~~~l~~ 153 (692)
.|+|+..+|-|-+=...+ -.+.+.++.||+|+|||.+.+-- +.+ + ..+.++.+-|..=++-...+++.
T Consensus 11 ~FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El~~ 89 (755)
T KOG1131|consen 11 YFPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEELKR 89 (755)
T ss_pred ecCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHHHH
Confidence 589999999998754433 24678999999999999765421 211 1 24677777776666665555554
No 194
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.21 E-value=0.0062 Score=60.52 Aligned_cols=132 Identities=23% Similarity=0.267 Sum_probs=77.9
Q ss_pred CCCHHHHHHHHHHHc---CCCEEEEecCCChhHHHHHHHHH---hc-C-CeEEEEcccHHHHHHHHHHHHHc-----CCC
Q 035988 91 AYRANQQEIINAVLS---GRDVLVIMAAGGGKSLCYQLPAV---LR-E-GIALVVSPLLSLIQDQVMCLAAL-----GIP 157 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~---g~dviv~apTGsGKTl~~~lpal---~~-~-~~~lvi~Pt~~L~~q~~~~l~~~-----gi~ 157 (692)
-+||.|.++...+.+ |++.+.++-+|.|||-+. +|++ +. + ..+-+++| .+|..|....++.. |-+
T Consensus 23 liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI-~Pmla~~LAdg~~LvrviVp-k~Ll~q~~~~L~~~lg~l~~r~ 100 (229)
T PF12340_consen 23 LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVI-VPMLALALADGSRLVRVIVP-KALLEQMRQMLRSRLGGLLNRR 100 (229)
T ss_pred eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchH-HHHHHHHHcCCCcEEEEEcC-HHHHHHHHHHHHHHHHHHhCCe
Confidence 789999999999886 578999999999999764 4443 33 3 34445555 47888888888753 222
Q ss_pred EEE--EecCCC--hhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHh---------------hhhcCCceEEEE
Q 035988 158 AHM--LTSTTS--KEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEK---------------CHHAGRLSLISI 218 (692)
Q Consensus 158 ~~~--~~~~~~--~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~---------------~~~~~~l~~iVI 218 (692)
+.. ++-... ......+..-+......-.|+++|||.+.+. .+ ..++. ...+.....=|+
T Consensus 101 i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf-~L-~~le~l~~~~~~~~~~l~~~q~~l~~~~rdil 178 (229)
T PF12340_consen 101 IYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSF-KL-KGLERLQDGKPEEARELLKIQKWLDEHSRDIL 178 (229)
T ss_pred eEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHH-HH-HHHHHHHhcCHHHHHHHHHHHHHHHhcCCeEe
Confidence 222 222222 2222222211111111456999999987642 11 11111 112344566799
Q ss_pred eCcccccc
Q 035988 219 DEAHCCSQ 226 (692)
Q Consensus 219 DEaH~l~~ 226 (692)
||+|.++.
T Consensus 179 DEsDe~L~ 186 (229)
T PF12340_consen 179 DESDEILS 186 (229)
T ss_pred ECchhccC
Confidence 99998653
No 195
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.14 E-value=0.0027 Score=73.47 Aligned_cols=141 Identities=18% Similarity=0.145 Sum_probs=96.1
Q ss_pred CCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCC-EEEEecCCChhHHH--HHHHHH-hcCCeEEEEcccHHHHHHH
Q 035988 72 TFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRD-VLVIMAAGGGKSLC--YQLPAV-LREGIALVVSPLLSLIQDQ 147 (692)
Q Consensus 72 ~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~d-viv~apTGsGKTl~--~~lpal-~~~~~~lvi~Pt~~L~~q~ 147 (692)
.....+.+...+. ..+..-|++|+-.++..+| .++.+-+|+|||.+ .++-+| ..+.++|..+-|.+-+..+
T Consensus 655 ~~~~~p~~~~~~~-----~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNI 729 (1100)
T KOG1805|consen 655 SKVLIPKIKKIIL-----LRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNI 729 (1100)
T ss_pred ccccCchhhHHHH-----hhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHcCCeEEEEehhhHHHHHH
Confidence 3445555555322 2678999999999998877 68899999999954 344444 3478899999999999999
Q ss_pred HHHHHHcCCCEEEEecCCChhHHH-----------HHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEE
Q 035988 148 VMCLAALGIPAHMLTSTTSKEDEK-----------FIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLI 216 (692)
Q Consensus 148 ~~~l~~~gi~~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~i 216 (692)
.-.|+.+++...-+.+........ ..+..+...-+.+.|+.+|---+.++ - +..+.+++.
T Consensus 730 LiKL~~~~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~p-l--------f~~R~FD~c 800 (1100)
T KOG1805|consen 730 LIKLKGFGIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHP-L--------FVNRQFDYC 800 (1100)
T ss_pred HHHHhccCcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCch-h--------hhccccCEE
Confidence 999999988766555443322111 11222333334678888887665532 1 133579999
Q ss_pred EEeCcccccc
Q 035988 217 SIDEAHCCSQ 226 (692)
Q Consensus 217 VIDEaH~l~~ 226 (692)
|||||-.++.
T Consensus 801 IiDEASQI~l 810 (1100)
T KOG1805|consen 801 IIDEASQILL 810 (1100)
T ss_pred EEcccccccc
Confidence 9999998753
No 196
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.05 E-value=0.0019 Score=69.79 Aligned_cols=47 Identities=23% Similarity=0.139 Sum_probs=36.1
Q ss_pred CEEEEecCCChhHHHHH-HHHHh----cCCeEEEEcccHHHHHHHHHHHHHc
Q 035988 108 DVLVIMAAGGGKSLCYQ-LPAVL----REGIALVVSPLLSLIQDQVMCLAAL 154 (692)
Q Consensus 108 dviv~apTGsGKTl~~~-lpal~----~~~~~lvi~Pt~~L~~q~~~~l~~~ 154 (692)
-++|.+..|||||+..+ +..-+ .+..++++++..+|+......+...
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~ 54 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKK 54 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhh
Confidence 37899999999998765 22222 3578999999999998877777665
No 197
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.00 E-value=0.0047 Score=57.27 Aligned_cols=52 Identities=19% Similarity=0.238 Sum_probs=39.9
Q ss_pred eEeccCCCHHHHHHHHHHHhcCC-CcEEEeccccccccCCCC--ccEEEEeCCCC
Q 035988 343 DYYHADMDINAREKVHMRWSKNK-LQVIVGTVAFGMGINKPD--VRFVIHHSLSK 394 (692)
Q Consensus 343 ~~~h~~~~~~eR~~~~~~f~~g~-~~ILVaT~~~~~GIDip~--v~~VI~~~~P~ 394 (692)
.++.-+.+..+...+++.|+... ..||++|..+.+|||+|+ ++.||..++|.
T Consensus 25 ~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 25 LLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred eEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 34444455556788899998754 379999988999999997 46799888874
No 198
>PRK08181 transposase; Validated
Probab=96.91 E-value=0.041 Score=56.78 Aligned_cols=55 Identities=24% Similarity=0.342 Sum_probs=31.5
Q ss_pred CHHHHHHHH----HHHcCCCEEEEecCCChhHHHHH-HH-HHhcCCeEEEEcccHHHHHHH
Q 035988 93 RANQQEIIN----AVLSGRDVLVIMAAGGGKSLCYQ-LP-AVLREGIALVVSPLLSLIQDQ 147 (692)
Q Consensus 93 r~~Q~~ai~----~il~g~dviv~apTGsGKTl~~~-lp-al~~~~~~lvi~Pt~~L~~q~ 147 (692)
.+.|..++. .+-.++++++.||+|+|||-... +. .++..+..++..+..+|+.+.
T Consensus 89 ~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l 149 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKL 149 (269)
T ss_pred CHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHH
Confidence 344544442 33467889999999999995332 21 223334444444555555544
No 199
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=96.90 E-value=0.0046 Score=57.44 Aligned_cols=68 Identities=21% Similarity=0.254 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhcCCC---cEEEeccc--cccccCCCC--ccEEEEeCCCC------------------------------
Q 035988 352 NAREKVHMRWSKNKL---QVIVGTVA--FGMGINKPD--VRFVIHHSLSK------------------------------ 394 (692)
Q Consensus 352 ~eR~~~~~~f~~g~~---~ILVaT~~--~~~GIDip~--v~~VI~~~~P~------------------------------ 394 (692)
.+...+++.|+...- .||+++.- +++|||+|+ ++.||..++|.
T Consensus 31 ~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (142)
T smart00491 31 GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLF 110 (142)
T ss_pred chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 344677888876433 58988887 999999998 57899888884
Q ss_pred -CHHHHHHHHhhcCCCCCCCeeEeec
Q 035988 395 -SVETYYQESGRAGRDGLPSECLLFF 419 (692)
Q Consensus 395 -s~~~y~Qr~GRagR~G~~g~~i~l~ 419 (692)
-+....|.+||+-|...+--+++++
T Consensus 111 ~a~~~~~Qa~GR~iR~~~D~g~i~l~ 136 (142)
T smart00491 111 DAMRALAQAIGRAIRHKNDYGVVVLL 136 (142)
T ss_pred HHHHHHHHHhCccccCccceEEEEEE
Confidence 1123468889998876653344444
No 200
>PRK10536 hypothetical protein; Provisional
Probab=96.81 E-value=0.022 Score=57.84 Aligned_cols=57 Identities=23% Similarity=0.242 Sum_probs=41.7
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHH---hcC--CeEEEEcccHHH
Q 035988 87 FGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAV---LRE--GIALVVSPLLSL 143 (692)
Q Consensus 87 fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal---~~~--~~~lvi~Pt~~L 143 (692)
+++...+..|...+.++.++.-+++.+|+|+|||+....-++ ..+ .+++|.-|+.+.
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ 116 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQA 116 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCc
Confidence 456667789999999999888899999999999987654333 233 345666666543
No 201
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.80 E-value=0.016 Score=66.59 Aligned_cols=76 Identities=16% Similarity=0.091 Sum_probs=55.3
Q ss_pred HHHHHHHHhcCCCC-CCHHHHHHHHHHHcCCCEEEEecCCChhHHHH--HHHHHhc-----CCeEEEEcccHHHHHHHHH
Q 035988 78 RADDVRLNVFGIPA-YRANQQEIINAVLSGRDVLVIMAAGGGKSLCY--QLPAVLR-----EGIALVVSPLLSLIQDQVM 149 (692)
Q Consensus 78 ~~~~~l~~~fg~~~-~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~--~lpal~~-----~~~~lvi~Pt~~L~~q~~~ 149 (692)
.+.+.|.+.|+... ..++|+.|+...+.++-+++.+++|+|||.+. ++-.+.. ...+++.+||.--+....+
T Consensus 138 ~~~~~l~~lf~~~~~~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e 217 (615)
T PRK10875 138 LLRQTLDALFGPVTDEVDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTE 217 (615)
T ss_pred HHHHHHHHhcCcCCCCCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHH
Confidence 34555666676542 35899999999999999999999999999653 3333322 2367888999888877776
Q ss_pred HHHH
Q 035988 150 CLAA 153 (692)
Q Consensus 150 ~l~~ 153 (692)
.+..
T Consensus 218 ~~~~ 221 (615)
T PRK10875 218 SLGK 221 (615)
T ss_pred HHHh
Confidence 6654
No 202
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.71 E-value=0.015 Score=68.61 Aligned_cols=61 Identities=10% Similarity=0.097 Sum_probs=46.6
Q ss_pred HhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHH--HHHHHhc-C--CeEEEEcccHHHHHH
Q 035988 85 NVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCY--QLPAVLR-E--GIALVVSPLLSLIQD 146 (692)
Q Consensus 85 ~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~--~lpal~~-~--~~~lvi~Pt~~L~~q 146 (692)
..+++ .+++.|++|+..+..++-+++.++.|+|||.+. ++-++.. + ..+++++||-.-+..
T Consensus 318 ~~~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~ 383 (720)
T TIGR01448 318 KKLRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKR 383 (720)
T ss_pred HhcCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHH
Confidence 34565 789999999999999999999999999999743 2333332 3 467788999877764
No 203
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.71 E-value=0.28 Score=54.21 Aligned_cols=56 Identities=20% Similarity=0.140 Sum_probs=33.2
Q ss_pred CCceEEEEeCcccccccCCCchHHHHHHHHHHh-h-CCCCCEEEEecccchhhHHHHHHHhc
Q 035988 211 GRLSLISIDEAHCCSQWGHDFRPDYKNLGILKT-Q-FPDVPMMALTATATQKVQNDLMEMLH 270 (692)
Q Consensus 211 ~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~-~-~~~~~~i~lSAT~~~~~~~~i~~~l~ 270 (692)
.+.++|+||-+-.... -......+..+.. . .+....++++||........+.+.+.
T Consensus 298 ~~~DlVlIDt~G~~~~----d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~ 355 (424)
T PRK05703 298 RDCDVILIDTAGRSQR----DKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFS 355 (424)
T ss_pred CCCCEEEEeCCCCCCC----CHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhC
Confidence 3689999999866321 1122233333433 2 23334688999998877776666554
No 204
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=96.69 E-value=0.11 Score=61.85 Aligned_cols=62 Identities=18% Similarity=0.201 Sum_probs=48.7
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHH--HHHHh-----cCCeEEEEcccHHHHHHHHHHHHHc
Q 035988 91 AYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQ--LPAVL-----REGIALVVSPLLSLIQDQVMCLAAL 154 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~--lpal~-----~~~~~lvi~Pt~~L~~q~~~~l~~~ 154 (692)
.++|-|++|+.+ ....++|.|..|||||.+.. +.-+. .+..+|+|+-|+..+.++.+++.++
T Consensus 9 ~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~ 77 (721)
T PRK11773 9 SLNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQL 77 (721)
T ss_pred hcCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHH
Confidence 689999999875 35689999999999996532 22222 2357999999999999999888775
No 205
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.60 E-value=0.28 Score=52.71 Aligned_cols=20 Identities=25% Similarity=0.258 Sum_probs=16.1
Q ss_pred cCCCEEEEecCCChhHHHHH
Q 035988 105 SGRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~~ 124 (692)
.++.+++++|||+|||....
T Consensus 205 ~~~ii~lvGptGvGKTTt~a 224 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLV 224 (407)
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 35678899999999996543
No 206
>PRK06526 transposase; Provisional
Probab=96.55 E-value=0.021 Score=58.46 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=18.2
Q ss_pred HHHcCCCEEEEecCCChhHHHHH
Q 035988 102 AVLSGRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 102 ~il~g~dviv~apTGsGKTl~~~ 124 (692)
.+-.+.+++++||+|+|||....
T Consensus 94 fi~~~~nlll~Gp~GtGKThLa~ 116 (254)
T PRK06526 94 FVTGKENVVFLGPPGTGKTHLAI 116 (254)
T ss_pred hhhcCceEEEEeCCCCchHHHHH
Confidence 34467899999999999996543
No 207
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.54 E-value=0.058 Score=58.56 Aligned_cols=124 Identities=14% Similarity=0.217 Sum_probs=66.2
Q ss_pred CCCEEEEecCCChhHHHHH-HHHHh------cCCeE-EEEc-ccHHHHHHHHHHHHH-cCCCEEEEecCCChhHHHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQ-LPAVL------REGIA-LVVS-PLLSLIQDQVMCLAA-LGIPAHMLTSTTSKEDEKFIYK 175 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~-lpal~------~~~~~-lvi~-Pt~~L~~q~~~~l~~-~gi~~~~~~~~~~~~~~~~~~~ 175 (692)
.+.+++++|||+|||.+.. +.+.. .+..+ +|-+ +.|.-+.+|...+.+ +|+++....
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~------------- 240 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIE------------- 240 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeC-------------
Confidence 3568899999999997654 32221 12333 3333 334545555444443 455442211
Q ss_pred HHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHHHHhhC-CC-CCEEEE
Q 035988 176 ALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQF-PD-VPMMAL 253 (692)
Q Consensus 176 ~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~-~~-~~~i~l 253 (692)
+++.+ ...+.. ..+.++|+||++.+... + ...+.++..+.... ++ -.++.+
T Consensus 241 --------------~~~~l------~~~L~~---~~~~DlVLIDTaGr~~~---~-~~~l~el~~~l~~~~~~~e~~LVl 293 (388)
T PRK12723 241 --------------SFKDL------KEEITQ---SKDFDLVLVDTIGKSPK---D-FMKLAEMKELLNACGRDAEFHLAV 293 (388)
T ss_pred --------------cHHHH------HHHHHH---hCCCCEEEEcCCCCCcc---C-HHHHHHHHHHHHhcCCCCeEEEEE
Confidence 12211 111221 25789999999998531 1 11234444444432 23 356899
Q ss_pred ecccchhhHHHHHHHh
Q 035988 254 TATATQKVQNDLMEML 269 (692)
Q Consensus 254 SAT~~~~~~~~i~~~l 269 (692)
|||........+.+.+
T Consensus 294 sat~~~~~~~~~~~~~ 309 (388)
T PRK12723 294 SSTTKTSDVKEIFHQF 309 (388)
T ss_pred cCCCCHHHHHHHHHHh
Confidence 9999876666554443
No 208
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.52 E-value=0.021 Score=51.70 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=13.0
Q ss_pred CCCEEEEecCCChhHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~ 124 (692)
++.+++.||+|+|||.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~ 22 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIK 22 (131)
T ss_dssp ---EEEEE-TTSSHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHH
Confidence 4568999999999997643
No 209
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.44 E-value=0.91 Score=48.35 Aligned_cols=42 Identities=19% Similarity=0.270 Sum_probs=26.0
Q ss_pred CCCEEEEecCCChhHHHHH--HHHHhcCCeEEEEcccHHHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQ--LPAVLREGIALVVSPLLSLIQDQ 147 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~--lpal~~~~~~lvi~Pt~~L~~q~ 147 (692)
+.++++.||||+|||.... ...+...+..++..+...|+.+.
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l 226 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEIL 226 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHH
Confidence 5789999999999995332 22233344444555555555443
No 210
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=96.41 E-value=0.27 Score=58.51 Aligned_cols=63 Identities=14% Similarity=0.223 Sum_probs=48.2
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHH--HHHHh-c----CCeEEEEcccHHHHHHHHHHHHHc
Q 035988 90 PAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQ--LPAVL-R----EGIALVVSPLLSLIQDQVMCLAAL 154 (692)
Q Consensus 90 ~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~--lpal~-~----~~~~lvi~Pt~~L~~q~~~~l~~~ 154 (692)
..++|-|.+|+.+ ....++|.|..|||||.+.. +.-+. . +..+|+++-|+..+.++.+++.++
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~ 72 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKL 72 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHH
Confidence 3689999999976 35789999999999996543 22222 1 357899999999998888888754
No 211
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.38 E-value=0.19 Score=54.16 Aligned_cols=54 Identities=15% Similarity=0.180 Sum_probs=30.3
Q ss_pred CCceEEEEeCcccccccCCCchH-HHHHHHHHHhhC-CCCCEEEEecccchhhHHHHHHHh
Q 035988 211 GRLSLISIDEAHCCSQWGHDFRP-DYKNLGILKTQF-PDVPMMALTATATQKVQNDLMEML 269 (692)
Q Consensus 211 ~~l~~iVIDEaH~l~~~g~~fr~-~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l 269 (692)
.+.++++||.+-... +.. ....+..+.... +...++.++||........+...+
T Consensus 214 ~~~DlVLIDTaG~~~-----~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f 269 (374)
T PRK14722 214 RNKHMVLIDTIGMSQ-----RDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAY 269 (374)
T ss_pred cCCCEEEEcCCCCCc-----ccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHH
Confidence 467899999996431 111 112222332222 233478999999887766554433
No 212
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.36 E-value=0.034 Score=63.81 Aligned_cols=61 Identities=16% Similarity=0.117 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHcCCCEEEEecCCChhHHHH--HHHHHhc------CCeEEEEcccHHHHHHHHHHHHH
Q 035988 93 RANQQEIINAVLSGRDVLVIMAAGGGKSLCY--QLPAVLR------EGIALVVSPLLSLIQDQVMCLAA 153 (692)
Q Consensus 93 r~~Q~~ai~~il~g~dviv~apTGsGKTl~~--~lpal~~------~~~~lvi~Pt~~L~~q~~~~l~~ 153 (692)
.++|+.|+..++.++-+++.++.|+|||.+. ++-.+.. ..++++.+||---+....+.+..
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~ 215 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRK 215 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHh
Confidence 3789999999999999999999999999753 3333322 14688999998877776666554
No 213
>PF11408 Helicase_Sgs1: Sgs1 RecQ helicase; InterPro: IPR022758 RecQ helicases unwind DNA in an ATP-dependent manner. Sgs1 has a HRDC (helicase and RNaseD C-terminal) domain which modulates the helicase function via auxiliary contacts to DNA []. The proteins matching this entry are restricted to fungi (Saccharomycetaceae). ; PDB: 1D8B_A.
Probab=96.33 E-value=0.0068 Score=49.47 Aligned_cols=56 Identities=20% Similarity=0.319 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCCceEeccHHHHHHHHHcCCCChhhcchhhhhhc--ccchhhhhh
Q 035988 576 ALEFELDELRKELASISGGILPHSVLSSQLIRLISARKPSTMEEASSNHLEKI--IGKLKTGKY 637 (692)
Q Consensus 576 ~l~~~l~~~r~~~a~~~~~~~~~~i~~~~~l~~~~~~~p~~~~~~~~~~l~~i--~g~~k~~~~ 637 (692)
.-|++|++.|-..+.+ .|.|---.+||.+|+.||...|.|.+| +..+ +++...++|
T Consensus 7 ~aY~~Lr~~~~~~~~~-~n~p~~~f~sd~~LKk~A~~LP~te~e-----F~~l~g~~~~~~~kF 64 (80)
T PF11408_consen 7 SAYEKLREISINLSNR-MNPPNDNFMSDTILKKMATKLPTTEEE-----FSKLVGINEQQRKKF 64 (80)
T ss_dssp HHHHHHHHHHHHHHHS-SSS--S-SS-HHHHHHHHHH---SHHH-----HGGGS---HHHHHHG
T ss_pred HHHHHHHHHHHHHhhc-cCCCccccCCHHHHHHHHHHCCCCHHH-----HHHhcCCcHHHHHHH
Confidence 3599999999999999 898877777999999999999999999 9999 665554544
No 214
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.31 E-value=0.028 Score=51.33 Aligned_cols=18 Identities=22% Similarity=0.355 Sum_probs=15.7
Q ss_pred CCCEEEEecCCChhHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCY 123 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~ 123 (692)
++.+++.+|+|+|||...
T Consensus 19 ~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 677999999999999754
No 215
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.22 E-value=0.14 Score=55.30 Aligned_cols=55 Identities=18% Similarity=0.140 Sum_probs=32.4
Q ss_pred CceEEEEeCcccccccCCCchHHHHHHHHHHh-hCCCCCEEEEecccchhhHHHHHHHhc
Q 035988 212 RLSLISIDEAHCCSQWGHDFRPDYKNLGILKT-QFPDVPMMALTATATQKVQNDLMEMLH 270 (692)
Q Consensus 212 ~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~-~~~~~~~i~lSAT~~~~~~~~i~~~l~ 270 (692)
+.++|+||-+-+... -...+..+..+.. ..|+..++.+|||........+.+.+.
T Consensus 320 ~~DvVLIDTaGRs~k----d~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~ 375 (436)
T PRK11889 320 RVDYILIDTAGKNYR----ASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFK 375 (436)
T ss_pred CCCEEEEeCccccCc----CHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHhc
Confidence 578999998876431 1233444444333 345555677999877655455554443
No 216
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.17 E-value=0.28 Score=52.74 Aligned_cols=124 Identities=17% Similarity=0.272 Sum_probs=67.4
Q ss_pred CCCEEEEecCCChhHHHHH-HHHHh---c--CCeEEEEccc-HHHHHHHHHHHH-HcCCCEEEEecCCChhHHHHHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQ-LPAVL---R--EGIALVVSPL-LSLIQDQVMCLA-ALGIPAHMLTSTTSKEDEKFIYKAL 177 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~-lpal~---~--~~~~lvi~Pt-~~L~~q~~~~l~-~~gi~~~~~~~~~~~~~~~~~~~~l 177 (692)
++-+.++||||.|||.+-. |.+.. . ...+||-+.| |-=|..|.+... -+|+++.+.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv---------------- 266 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVV---------------- 266 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEe----------------
Confidence 6778999999999996533 22221 1 2455555544 333333333333 334444333
Q ss_pred HhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchH--HHHHHHHHHhhCCCCC-EEEEe
Q 035988 178 EKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRP--DYKNLGILKTQFPDVP-MMALT 254 (692)
Q Consensus 178 ~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~--~~~~l~~l~~~~~~~~-~i~lS 254 (692)
-+|.-|. ..+. .+.+.++|.||=+-+ .+++ ...++..+....++.. .+.+|
T Consensus 267 -----------~~~~el~------~ai~---~l~~~d~ILVDTaGr------s~~D~~~i~el~~~~~~~~~i~~~Lvls 320 (407)
T COG1419 267 -----------YSPKELA------EAIE---ALRDCDVILVDTAGR------SQYDKEKIEELKELIDVSHSIEVYLVLS 320 (407)
T ss_pred -----------cCHHHHH------HHHH---HhhcCCEEEEeCCCC------CccCHHHHHHHHHHHhccccceEEEEEe
Confidence 3444332 1111 234678899988765 1222 2233333333333333 47899
Q ss_pred cccchhhHHHHHHHhcc
Q 035988 255 ATATQKVQNDLMEMLHI 271 (692)
Q Consensus 255 AT~~~~~~~~i~~~l~~ 271 (692)
||........+...++.
T Consensus 321 at~K~~dlkei~~~f~~ 337 (407)
T COG1419 321 ATTKYEDLKEIIKQFSL 337 (407)
T ss_pred cCcchHHHHHHHHHhcc
Confidence 99998888887776653
No 217
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.14 E-value=0.11 Score=50.96 Aligned_cols=54 Identities=22% Similarity=0.200 Sum_probs=33.3
Q ss_pred CCceEEEEeCcccccccCCCchHHHHHHHHHHhhC-CCCCEEEEecccchhhHHHHHHH
Q 035988 211 GRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQF-PDVPMMALTATATQKVQNDLMEM 268 (692)
Q Consensus 211 ~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~ 268 (692)
.+.++|+||=+.+-. .-.....++..+.... |....+.++||........+..+
T Consensus 82 ~~~D~vlIDT~Gr~~----~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~ 136 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSP----RDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAF 136 (196)
T ss_dssp TTSSEEEEEE-SSSS----THHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHH
T ss_pred cCCCEEEEecCCcch----hhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHH
Confidence 468899999887632 1233344554544443 55566899999988766655544
No 218
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.11 E-value=0.0094 Score=64.62 Aligned_cols=54 Identities=26% Similarity=0.314 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHH------HcCCCEEEEecCCChhHHHHH-HHHHh--cCCeEEEEcccHHHHH
Q 035988 92 YRANQQEIINAV------LSGRDVLVIMAAGGGKSLCYQ-LPAVL--REGIALVVSPLLSLIQ 145 (692)
Q Consensus 92 ~r~~Q~~ai~~i------l~g~dviv~apTGsGKTl~~~-lpal~--~~~~~lvi~Pt~~L~~ 145 (692)
+.+-|+.+++.+ ..+..+++.+|-|+|||..+- +-... .+..+++++||-.-|.
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~ 64 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAF 64 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHH
Confidence 678899998888 567889999999999998653 11122 2457888899854443
No 219
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.04 E-value=0.012 Score=61.92 Aligned_cols=61 Identities=21% Similarity=0.198 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHH---HHhc----CCeEEEEcccHHHHHHHHHHHHHc
Q 035988 92 YRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLP---AVLR----EGIALVVSPLLSLIQDQVMCLAAL 154 (692)
Q Consensus 92 ~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lp---al~~----~~~~lvi~Pt~~L~~q~~~~l~~~ 154 (692)
+++-|.++|.. ....++|.|+.|||||.+.+-- .+.. +..+|++++|+..+.+...++...
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~ 68 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIREL 68 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHh
Confidence 46889999988 7889999999999999875421 2222 368999999999999999888874
No 220
>PRK08727 hypothetical protein; Validated
Probab=95.86 E-value=0.065 Score=54.28 Aligned_cols=16 Identities=25% Similarity=0.187 Sum_probs=13.6
Q ss_pred CCEEEEecCCChhHHH
Q 035988 107 RDVLVIMAAGGGKSLC 122 (692)
Q Consensus 107 ~dviv~apTGsGKTl~ 122 (692)
..+++.+|+|+|||-.
T Consensus 42 ~~l~l~G~~G~GKThL 57 (233)
T PRK08727 42 DWLYLSGPAGTGKTHL 57 (233)
T ss_pred CeEEEECCCCCCHHHH
Confidence 3489999999999953
No 221
>PF13871 Helicase_C_4: Helicase_C-like
Probab=95.84 E-value=0.023 Score=58.37 Aligned_cols=58 Identities=22% Similarity=0.157 Sum_probs=50.3
Q ss_pred HHHHHHhcCCCcEEEeccccccccCCCC--------ccEEEEeCCCCCHHHHHHHHhhcCCCCCCC
Q 035988 356 KVHMRWSKNKLQVIVGTVAFGMGINKPD--------VRFVIHHSLSKSVETYYQESGRAGRDGLPS 413 (692)
Q Consensus 356 ~~~~~f~~g~~~ILVaT~~~~~GIDip~--------v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g 413 (692)
...+.|.+|+..|+|-+.+.+.||-+-. -|+-|...+|+|.+..+|..||+.|.|+..
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~ 117 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVS 117 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhcccccccccc
Confidence 4567899999999999999999998753 345778899999999999999999999863
No 222
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.82 E-value=0.043 Score=49.51 Aligned_cols=38 Identities=18% Similarity=0.123 Sum_probs=24.9
Q ss_pred CCCEEEEecCCChhHHHHHHHHHhc-CC--eEEEEcccHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQLPAVLR-EG--IALVVSPLLSL 143 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~lpal~~-~~--~~lvi~Pt~~L 143 (692)
+..+++.+|+|+|||.....-+... .. .++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcc
Confidence 4678999999999998765333222 22 46666665444
No 223
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.82 E-value=0.18 Score=51.25 Aligned_cols=47 Identities=19% Similarity=0.267 Sum_probs=26.1
Q ss_pred CCceEEEEeCcccccccCCCchHHHHHHHHHHhhC-CCCCEEEEecccchh
Q 035988 211 GRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQF-PDVPMMALTATATQK 260 (692)
Q Consensus 211 ~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~ 260 (692)
...+++||||.++... .++...... ..+...+ ...|+++.|--....
T Consensus 161 ~~~dlLvIDDig~~~~--s~~~~~~l~-~Ii~~Ry~~~~~tiitSNl~~~~ 208 (244)
T PRK07952 161 SNVDLLVIDEIGVQTE--SRYEKVIIN-QIVDRRSSSKRPTGMLTNSNMEE 208 (244)
T ss_pred ccCCEEEEeCCCCCCC--CHHHHHHHH-HHHHHHHhCCCCEEEeCCCCHHH
Confidence 4689999999998652 223322111 1222222 256777777655443
No 224
>PRK14974 cell division protein FtsY; Provisional
Probab=95.82 E-value=0.22 Score=53.14 Aligned_cols=128 Identities=14% Similarity=0.121 Sum_probs=67.4
Q ss_pred CCEEEEecCCChhHHHHH-H-HHHhc-CCeEEEEcc--c-HHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhc
Q 035988 107 RDVLVIMAAGGGKSLCYQ-L-PAVLR-EGIALVVSP--L-LSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKG 180 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~-l-pal~~-~~~~lvi~P--t-~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~ 180 (692)
.-+++.+|+|+|||.+.. + ..+.. +.+++++.. . ..-+.|.......+|+++.....+..
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~d-------------- 206 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGAD-------------- 206 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCC--------------
Confidence 347899999999997543 2 22222 345555543 2 34445555566667766542211111
Q ss_pred CCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHHHHh-hCCCCCEEEEecccch
Q 035988 181 EGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKT-QFPDVPMMALTATATQ 259 (692)
Q Consensus 181 ~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~-~~~~~~~i~lSAT~~~ 259 (692)
|..+.. ...+.. .....++|+||.|+++.. -...+..|..+.. ..|+..++.++||...
T Consensus 207 ----------p~~v~~--~ai~~~----~~~~~DvVLIDTaGr~~~----~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~ 266 (336)
T PRK14974 207 ----------PAAVAY--DAIEHA----KARGIDVVLIDTAGRMHT----DANLMDELKKIVRVTKPDLVIFVGDALAGN 266 (336)
T ss_pred ----------HHHHHH--HHHHHH----HhCCCCEEEEECCCccCC----cHHHHHHHHHHHHhhCCceEEEeeccccch
Confidence 111000 011111 113578999999998641 2233344444433 3467677889998876
Q ss_pred hhHHHHHHH
Q 035988 260 KVQNDLMEM 268 (692)
Q Consensus 260 ~~~~~i~~~ 268 (692)
.....+..+
T Consensus 267 d~~~~a~~f 275 (336)
T PRK14974 267 DAVEQAREF 275 (336)
T ss_pred hHHHHHHHH
Confidence 655544443
No 225
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.75 E-value=3.2 Score=46.79 Aligned_cols=54 Identities=19% Similarity=0.159 Sum_probs=30.5
Q ss_pred CCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHH
Q 035988 211 GRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEM 268 (692)
Q Consensus 211 ~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~ 268 (692)
.+.++|+||.+-.... -......+..+........+++++++........+.+.
T Consensus 427 ~~~DLVLIDTaG~s~~----D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~eii~~ 480 (559)
T PRK12727 427 RDYKLVLIDTAGMGQR----DRALAAQLNWLRAARQVTSLLVLPANAHFSDLDEVVRR 480 (559)
T ss_pred ccCCEEEecCCCcchh----hHHHHHHHHHHHHhhcCCcEEEEECCCChhHHHHHHHH
Confidence 4688999999876321 11112233334333445567888998875555544443
No 226
>PRK08116 hypothetical protein; Validated
Probab=95.66 E-value=0.22 Score=51.59 Aligned_cols=40 Identities=15% Similarity=0.322 Sum_probs=23.0
Q ss_pred CCEEEEecCCChhHHHHHH--HHHhcCCeEEEEcccHHHHHH
Q 035988 107 RDVLVIMAAGGGKSLCYQL--PAVLREGIALVVSPLLSLIQD 146 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~l--pal~~~~~~lvi~Pt~~L~~q 146 (692)
..+++.+++|+|||..... -.+...+..++..+..+|+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~ 156 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNR 156 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 3499999999999964432 112222333444444555443
No 227
>PRK12377 putative replication protein; Provisional
Probab=95.62 E-value=0.13 Score=52.43 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=26.3
Q ss_pred CCCEEEEecCCChhHHHHH-HH-HHhcCCeEEEEcccHHHHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQ-LP-AVLREGIALVVSPLLSLIQDQV 148 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~-lp-al~~~~~~lvi~Pt~~L~~q~~ 148 (692)
...+++.+|+|+|||.... +. .+...+..++.++..+|+.+..
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~ 145 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLH 145 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHH
Confidence 3579999999999995332 21 2333444445555556665543
No 228
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=95.59 E-value=0.0059 Score=69.79 Aligned_cols=74 Identities=14% Similarity=0.206 Sum_probs=60.3
Q ss_pred HHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhc---CCCcEEEeccccccc
Q 035988 304 IAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSK---NKLQVIVGTVAFGMG 378 (692)
Q Consensus 304 l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~---g~~~ILVaT~~~~~G 378 (692)
|...++.....+.+++||..-....+.+-.++...+ ....+.|..+..+|...+..|.. .....|.+|.+.|.|
T Consensus 620 l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 620 LLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 344444445578999999998888888888888888 88899999999999999999983 346688999988876
No 229
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.49 E-value=0.057 Score=57.46 Aligned_cols=40 Identities=23% Similarity=0.360 Sum_probs=26.0
Q ss_pred CCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccch
Q 035988 211 GRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQ 259 (692)
Q Consensus 211 ~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~ 259 (692)
++=.+++|||+|++..-..+ .+.....+-.++++-||...
T Consensus 103 gr~tiLflDEIHRfnK~QQD---------~lLp~vE~G~iilIGATTEN 142 (436)
T COG2256 103 GRRTILFLDEIHRFNKAQQD---------ALLPHVENGTIILIGATTEN 142 (436)
T ss_pred CCceEEEEehhhhcChhhhh---------hhhhhhcCCeEEEEeccCCC
Confidence 35578999999996532211 34444456678888888653
No 230
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=95.49 E-value=0.083 Score=61.22 Aligned_cols=137 Identities=19% Similarity=0.173 Sum_probs=83.9
Q ss_pred CCEEEEecCCChhHHHHHHHHHh------------cCCeEEEEcccHHHHHHHHHHHHHc----CCCEEEEecCCChhHH
Q 035988 107 RDVLVIMAAGGGKSLCYQLPAVL------------REGIALVVSPLLSLIQDQVMCLAAL----GIPAHMLTSTTSKEDE 170 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~lpal~------------~~~~~lvi~Pt~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~ 170 (692)
+-.|+.-.-|-|||...+.-.+. ....+|||+|+ +++.|+...+.+. ...+.+++| ....
T Consensus 153 ~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~-s~~~qW~~elek~~~~~~l~v~v~~g-r~kd-- 228 (674)
T KOG1001|consen 153 RGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPT-SLLTQWKTELEKVTEEDKLSIYVYHG-RTKD-- 228 (674)
T ss_pred ccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecch-HHHHHHHHHHhccCCccceEEEEecc-cccc--
Confidence 45788889999999865432221 12467888887 6777777777544 233444554 1111
Q ss_pred HHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCE
Q 035988 171 KFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPM 250 (692)
Q Consensus 171 ~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~ 250 (692)
...+ ..++|+++||..+..+. + ..-.+-.+|+||||.+..+... .............
T Consensus 229 ---~~el----~~~dVVltTy~il~~~~-----l----~~i~w~Riildea~~ikn~~tq-------~~~a~~~L~a~~R 285 (674)
T KOG1001|consen 229 ---KSEL----NSYDVVLTTYDILKNSP-----L----VKIKWLRIVLDEAHTIKNKDTQ-------IFKAVCQLDAKYR 285 (674)
T ss_pred ---cchh----cCCceEEeeHHHhhccc-----c----cceeEEEEEeccccccCCcchH-------hhhhheeecccee
Confidence 1111 16889999999886311 1 1135678999999999865421 1111112223344
Q ss_pred EEEecccchhhHHHHHHHhc
Q 035988 251 MALTATATQKVQNDLMEMLH 270 (692)
Q Consensus 251 i~lSAT~~~~~~~~i~~~l~ 270 (692)
-.+|+|+......++...+.
T Consensus 286 WcLtgtPiqn~~~~lysl~~ 305 (674)
T KOG1001|consen 286 WCLTGTPIQNNLDELYSLFK 305 (674)
T ss_pred eeecCChhhhhHHHHHHHHH
Confidence 67899999888888776654
No 231
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.39 E-value=0.071 Score=51.64 Aligned_cols=48 Identities=19% Similarity=0.161 Sum_probs=33.0
Q ss_pred EEEEecCCChhHHHHH---HHHHhcCCeEEEEcccHHHHHHHHHHHHHcCCC
Q 035988 109 VLVIMAAGGGKSLCYQ---LPAVLREGIALVVSPLLSLIQDQVMCLAALGIP 157 (692)
Q Consensus 109 viv~apTGsGKTl~~~---lpal~~~~~~lvi~Pt~~L~~q~~~~l~~~gi~ 157 (692)
+++.+|+|+|||...+ ...+..+..+++++. .+-..+..+.+..+|+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~-e~~~~~~~~~~~~~g~~ 52 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL-EESPEELIENAESLGWD 52 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC-CCCHHHHHHHHHHcCCC
Confidence 6899999999997443 223345667777754 45567777777777654
No 232
>PRK06921 hypothetical protein; Provisional
Probab=95.23 E-value=0.35 Score=49.97 Aligned_cols=17 Identities=18% Similarity=0.348 Sum_probs=14.7
Q ss_pred CCCEEEEecCCChhHHH
Q 035988 106 GRDVLVIMAAGGGKSLC 122 (692)
Q Consensus 106 g~dviv~apTGsGKTl~ 122 (692)
+..+++.+|||+|||..
T Consensus 117 ~~~l~l~G~~G~GKThL 133 (266)
T PRK06921 117 KNSIALLGQPGSGKTHL 133 (266)
T ss_pred CCeEEEECCCCCcHHHH
Confidence 56799999999999953
No 233
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=95.17 E-value=0.084 Score=62.04 Aligned_cols=77 Identities=16% Similarity=0.277 Sum_probs=62.1
Q ss_pred chHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHC----C-CceeE-eccCCCHHHHHHHHHHHhcCCCcEEE
Q 035988 297 GKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQR----G-ISADY-YHADMDINAREKVHMRWSKNKLQVIV 370 (692)
Q Consensus 297 ~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~----g-~~v~~-~h~~~~~~eR~~~~~~f~~g~~~ILV 370 (692)
+...+-.+..+.-.. .++++++.++|..-+.++++.|.+. + ..+.. |||.|+.+++++.+++|.+|..+|+|
T Consensus 109 GKTTfg~~~sl~~a~--kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIli 186 (1187)
T COG1110 109 GKTTFGLLMSLYLAK--KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILI 186 (1187)
T ss_pred chhHHHHHHHHHHHh--cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEE
Confidence 344455555555544 6799999999999999999999765 2 44333 99999999999999999999999999
Q ss_pred ecccc
Q 035988 371 GTVAF 375 (692)
Q Consensus 371 aT~~~ 375 (692)
+|+.|
T Consensus 187 tTs~F 191 (1187)
T COG1110 187 TTSQF 191 (1187)
T ss_pred EeHHH
Confidence 99875
No 234
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.16 E-value=0.1 Score=55.54 Aligned_cols=34 Identities=21% Similarity=0.102 Sum_probs=26.8
Q ss_pred CCCHHHHHHHHHHHcCC----CEEEEecCCChhHHHHH
Q 035988 91 AYRANQQEIINAVLSGR----DVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~g~----dviv~apTGsGKTl~~~ 124 (692)
..+|+|...+..++... -.++.+|.|.|||..+.
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~ 40 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAE 40 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHH
Confidence 35789999998888643 37899999999996543
No 235
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.10 E-value=0.25 Score=51.06 Aligned_cols=118 Identities=13% Similarity=0.108 Sum_probs=56.7
Q ss_pred HcCCCEEEEecCCChhHHHH-HHHH--Hhc-CCeEEEEcccHHHHHHHHHHHHHc--CCCEEEEe--cCCChhHHHHHHH
Q 035988 104 LSGRDVLVIMAAGGGKSLCY-QLPA--VLR-EGIALVVSPLLSLIQDQVMCLAAL--GIPAHMLT--STTSKEDEKFIYK 175 (692)
Q Consensus 104 l~g~dviv~apTGsGKTl~~-~lpa--l~~-~~~~lvi~Pt~~L~~q~~~~l~~~--gi~~~~~~--~~~~~~~~~~~~~ 175 (692)
..|.-+++.||||+|||... ++.. ... +..+++++-- .-..+...++... |+...... .............
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E-~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLE-EPVVRTARRLLGQYAGKRLHLPDTVFIYTLEEFDAAFD 106 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcc-cCHHHHHHHHHHHHhCCCcccCCccccccHHHHHHHHH
Confidence 35677899999999999533 3322 223 5677777632 2233444444332 33322111 1112222222222
Q ss_pred HHHhcCCCccEE-EeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccc
Q 035988 176 ALEKGEGELKML-YVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQ 226 (692)
Q Consensus 176 ~l~~~~~~~~Il-i~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~ 226 (692)
.+.. ...+. +-+++. .+...+...+........+++||||..+.+..
T Consensus 107 ~~~~---~~~l~i~d~~~~-~~~~~i~~~i~~~~~~~~~~~vvID~l~~l~~ 154 (271)
T cd01122 107 EFEG---TGRLFMYDSFGE-YSMDSVLEKVRYMAVSHGIQHIIIDNLSIMVS 154 (271)
T ss_pred HhcC---CCcEEEEcCCCc-cCHHHHHHHHHHHHhcCCceEEEECCHHHHhc
Confidence 2221 12222 322221 12223444444333334789999999998864
No 236
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.05 E-value=2.1 Score=46.82 Aligned_cols=55 Identities=15% Similarity=0.157 Sum_probs=32.2
Q ss_pred CCceEEEEeCcccccccCCCchHHHHHHHHHHhhC----CCCCEEEEecccchhhHHHHHHHh
Q 035988 211 GRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQF----PDVPMMALTATATQKVQNDLMEML 269 (692)
Q Consensus 211 ~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~----~~~~~i~lSAT~~~~~~~~i~~~l 269 (692)
...++|+||=+-+.. .-...+..+..+.... |.-.++.++||........+.+.+
T Consensus 298 ~~~D~VLIDTaGr~~----rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f 356 (432)
T PRK12724 298 DGSELILIDTAGYSH----RNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY 356 (432)
T ss_pred CCCCEEEEeCCCCCc----cCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 367888888765431 1123444444444432 334568899999886666665544
No 237
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.03 E-value=0.18 Score=53.28 Aligned_cols=36 Identities=25% Similarity=0.333 Sum_probs=27.8
Q ss_pred CCCCCHHHHHHHHHHHc----CC---CEEEEecCCChhHHHHH
Q 035988 89 IPAYRANQQEIINAVLS----GR---DVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 89 ~~~~r~~Q~~ai~~il~----g~---dviv~apTGsGKTl~~~ 124 (692)
++.++|+|..++..+.. |+ -.++.+|.|.||+..+.
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~ 44 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVAL 44 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHH
Confidence 45788999998887663 33 38999999999996543
No 238
>PRK05580 primosome assembly protein PriA; Validated
Probab=94.98 E-value=0.12 Score=60.86 Aligned_cols=77 Identities=13% Similarity=0.204 Sum_probs=65.8
Q ss_pred CCCceEEEEeccchHHHHHHHHHHC-CCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEEeC
Q 035988 314 NSESGIVYCFSRKECEQVAQELRQR-GISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHS 391 (692)
Q Consensus 314 ~~~~~IIf~~s~~~~e~l~~~L~~~-g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~ 391 (692)
.+.++||.++++..+.++++.|++. |..+..+||+++..+|........+|+.+|+|+|...-. +.++++.+||...
T Consensus 189 ~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~liVvDE 266 (679)
T PRK05580 189 QGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLIIVDE 266 (679)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEEEEEC
Confidence 5788999999999999999999874 888999999999999999999999999999999974322 4566788877544
No 239
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=94.95 E-value=0.02 Score=62.59 Aligned_cols=57 Identities=25% Similarity=0.349 Sum_probs=47.0
Q ss_pred CEEEEecCCChhHHHHHHHHHhc-CCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecC
Q 035988 108 DVLVIMAAGGGKSLCYQLPAVLR-EGIALVVSPLLSLIQDQVMCLAALGIPAHMLTST 164 (692)
Q Consensus 108 dviv~apTGsGKTl~~~lpal~~-~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~ 164 (692)
+++++||||||||.++.+|.++. ++.+||+-|--++........+..|-++.+++-.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~~~s~vv~D~Kge~~~~t~~~r~~~G~~V~v~nP~ 58 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTWPGSVVVLDPKGENFELTSEHRRALGRKVFVFDPT 58 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcCCCCEEEEccchhHHHHHHHHHHHcCCeEEEEcCC
Confidence 47899999999999999998865 5788888899999988777777777777766643
No 240
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=94.94 E-value=0.1 Score=61.86 Aligned_cols=56 Identities=18% Similarity=0.045 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHHHHcC-CCEEEEecCCChhHHHHH--HHHHh-cCCeEEEEcccHHHHHH
Q 035988 91 AYRANQQEIINAVLSG-RDVLVIMAAGGGKSLCYQ--LPAVL-REGIALVVSPLLSLIQD 146 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~g-~dviv~apTGsGKTl~~~--lpal~-~~~~~lvi~Pt~~L~~q 146 (692)
.+++.|++|+..++.+ +-+++.++.|+|||...- .-++. .+..+++++||---+..
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~ 411 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEG 411 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHH
Confidence 6899999999999874 567999999999996532 11222 35688889999665544
No 241
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.90 E-value=0.12 Score=58.51 Aligned_cols=77 Identities=14% Similarity=0.189 Sum_probs=65.2
Q ss_pred CCCceEEEEeccchHHHHHHHHHHC-CCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEEeC
Q 035988 314 NSESGIVYCFSRKECEQVAQELRQR-GISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHS 391 (692)
Q Consensus 314 ~~~~~IIf~~s~~~~e~l~~~L~~~-g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~ 391 (692)
.++++||.++++.-+.++++.|++. |..+..+||+++..+|........+|+.+|+|+|...-. ..++++..||...
T Consensus 24 ~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 24 LGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIVDE 101 (505)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEEEC
Confidence 6788999999999999999999875 778999999999999999999999999999999975332 4566777777443
No 242
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.90 E-value=0.34 Score=45.19 Aligned_cols=35 Identities=23% Similarity=0.228 Sum_probs=22.4
Q ss_pred EEEEecCCChhHHHHHHHH---HhcCCeEEEEcccHHH
Q 035988 109 VLVIMAAGGGKSLCYQLPA---VLREGIALVVSPLLSL 143 (692)
Q Consensus 109 viv~apTGsGKTl~~~lpa---l~~~~~~lvi~Pt~~L 143 (692)
+++.+|+|+|||.....-+ ...++.++++..-..+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch
Confidence 6789999999997543221 1235677776654443
No 243
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=94.89 E-value=0.16 Score=53.47 Aligned_cols=61 Identities=23% Similarity=0.257 Sum_probs=45.7
Q ss_pred HhcCCCCCCHHHHHHHHHHHcCC--CEEEEecCCChhHHHHHHHHHhc------CCeEEEEcccHHHHH
Q 035988 85 NVFGIPAYRANQQEIINAVLSGR--DVLVIMAAGGGKSLCYQLPAVLR------EGIALVVSPLLSLIQ 145 (692)
Q Consensus 85 ~~fg~~~~r~~Q~~ai~~il~g~--dviv~apTGsGKTl~~~lpal~~------~~~~lvi~Pt~~L~~ 145 (692)
+.||+..-.-.|.-|++.++... =|.+.++-|+|||+.++..++.. -.+.||-=|+..+-+
T Consensus 222 ~vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~ 290 (436)
T COG1875 222 EVWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGE 290 (436)
T ss_pred hhhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCccc
Confidence 67999777778888999988653 37889999999999887666643 256777667765543
No 244
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=94.71 E-value=0.28 Score=57.63 Aligned_cols=58 Identities=9% Similarity=0.088 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHHHhc--CCCccHHHHHHHHHhcccC----CC-cccCHHHHHHHHHHHHHcCcc
Q 035988 479 AGHAQCIISLLQDIQDN--NQRLTMLQLVDKMKIKLKE----ID-SDLKREEIEQLVLQLIIDRVL 537 (692)
Q Consensus 479 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~i~~l~~~~~l 537 (692)
+.+.+.+|-++-...+. ...++...+.+.++.-+.. +| ...+. .+..+|..|...|+|
T Consensus 1019 PlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk~iGv~plTq-RV~d~L~eL~~LGII 1083 (1164)
T PTZ00112 1019 PWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGKYIGMCSNNE-LFKIMLDKLVKMGIL 1083 (1164)
T ss_pred CHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhhhcCCCCcHH-HHHHHHHHHHhcCeE
Confidence 34555555533322222 2248888888876654321 22 34555 899999999999999
No 245
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.69 E-value=0.2 Score=50.21 Aligned_cols=16 Identities=19% Similarity=0.266 Sum_probs=13.7
Q ss_pred CCceEEEEeCcccccc
Q 035988 211 GRLSLISIDEAHCCSQ 226 (692)
Q Consensus 211 ~~l~~iVIDEaH~l~~ 226 (692)
...++++||..|.+..
T Consensus 96 ~~~DlL~iDDi~~l~~ 111 (219)
T PF00308_consen 96 RSADLLIIDDIQFLAG 111 (219)
T ss_dssp CTSSEEEEETGGGGTT
T ss_pred hcCCEEEEecchhhcC
Confidence 5789999999999763
No 246
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=94.67 E-value=0.031 Score=62.89 Aligned_cols=58 Identities=26% Similarity=0.371 Sum_probs=48.5
Q ss_pred CCEEEEecCCChhHHHHHHHHHhc-CCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecC
Q 035988 107 RDVLVIMAAGGGKSLCYQLPAVLR-EGIALVVSPLLSLIQDQVMCLAALGIPAHMLTST 164 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~lpal~~-~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~ 164 (692)
.+++++||||||||..+.+|.++. ++.+||.-|--+|.......+++.|-++.+++-.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~~~s~iV~D~KgEl~~~t~~~r~~~G~~V~vldp~ 103 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNYPGSMIVTDPKGELYEKTAGYRKKRGYKVYVLDPF 103 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhccCCEEEEECCCcHHHHHHHHHHHCCCEEEEeecc
Confidence 469999999999999999998876 4678888899999998888888887777666543
No 247
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.60 E-value=0.23 Score=51.51 Aligned_cols=43 Identities=23% Similarity=0.274 Sum_probs=25.8
Q ss_pred CCceEEEEeCcccccccCCCchHHHHHHHHHHhhCC--CCCEEEEecc
Q 035988 211 GRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFP--DVPMMALTAT 256 (692)
Q Consensus 211 ~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~--~~~~i~lSAT 256 (692)
-.+.++||||.|.+.... .+.+-.-+..++.... .+|++++ +|
T Consensus 144 ~~vrmLIIDE~H~lLaGs--~~~qr~~Ln~LK~L~NeL~ipiV~v-Gt 188 (302)
T PF05621_consen 144 LGVRMLIIDEFHNLLAGS--YRKQREFLNALKFLGNELQIPIVGV-GT 188 (302)
T ss_pred cCCcEEEeechHHHhccc--HHHHHHHHHHHHHHhhccCCCeEEe-cc
Confidence 378999999999987544 3333333333443332 5566654 44
No 248
>PRK04296 thymidine kinase; Provisional
Probab=94.58 E-value=0.15 Score=49.87 Aligned_cols=33 Identities=27% Similarity=0.155 Sum_probs=21.8
Q ss_pred CCEEEEecCCChhHHHHHHHH---HhcCCeEEEEcc
Q 035988 107 RDVLVIMAAGGGKSLCYQLPA---VLREGIALVVSP 139 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~lpa---l~~~~~~lvi~P 139 (692)
.-.++.+|+|+|||...+--+ ...+.+++++.|
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 346889999999996543212 134567777766
No 249
>PRK06893 DNA replication initiation factor; Validated
Probab=94.54 E-value=0.15 Score=51.39 Aligned_cols=48 Identities=6% Similarity=0.174 Sum_probs=26.2
Q ss_pred CCceEEEEeCcccccccCCCchHHHHHHHHHHhhC-CCCCEEEEecccchhh
Q 035988 211 GRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQF-PDVPMMALTATATQKV 261 (692)
Q Consensus 211 ~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~ 261 (692)
.+.++++|||+|.+.... .+...+.. .+.... .+.+++++|++.++..
T Consensus 90 ~~~dlLilDDi~~~~~~~-~~~~~l~~--l~n~~~~~~~~illits~~~p~~ 138 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNE-EWELAIFD--LFNRIKEQGKTLLLISADCSPHA 138 (229)
T ss_pred ccCCEEEEeChhhhcCCh-HHHHHHHH--HHHHHHHcCCcEEEEeCCCChHH
Confidence 367899999999875321 11111111 122222 2446678888876543
No 250
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=94.53 E-value=0.19 Score=59.27 Aligned_cols=78 Identities=14% Similarity=0.199 Sum_probs=67.6
Q ss_pred CCCceEEEEeccchHHHHHHHHHHC----CCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccc-cccccCCCCccEEE
Q 035988 314 NSESGIVYCFSRKECEQVAQELRQR----GISADYYHADMDINAREKVHMRWSKNKLQVIVGTVA-FGMGINKPDVRFVI 388 (692)
Q Consensus 314 ~~~~~IIf~~s~~~~e~l~~~L~~~----g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~-~~~GIDip~v~~VI 388 (692)
.+.+++|.++|+.-|.+.++.+++. |+++..+||+++..+|...++.+.+|+.+|+|+|.. +...+.++++.+||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 6778999999999999888877653 789999999999999999999999999999999975 45567888999988
Q ss_pred EeC
Q 035988 389 HHS 391 (692)
Q Consensus 389 ~~~ 391 (692)
.-.
T Consensus 389 IDE 391 (681)
T PRK10917 389 IDE 391 (681)
T ss_pred Eec
Confidence 433
No 251
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.51 E-value=0.57 Score=51.34 Aligned_cols=61 Identities=10% Similarity=0.147 Sum_probs=39.8
Q ss_pred hhHHHHHHHHHHHHHHhc-CCCccHHHHHHHHHhcccCCC-cccCHHHHHHHHHHHHHcCccc
Q 035988 478 LAGHAQCIISLLQDIQDN-NQRLTMLQLVDKMKIKLKEID-SDLKREEIEQLVLQLIIDRVLV 538 (692)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~l~~~~~l~ 538 (692)
.+...+.++.++....+. ...++...+.+.+..-+...| +.++..++..++..|...|++.
T Consensus 294 L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~~~~~~~~~~~l~~L~~~glI~ 356 (394)
T PRK00411 294 LPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYEPRTHTRFYEYINKLDMLGIIN 356 (394)
T ss_pred CCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHhcCCeE
Confidence 356667777776654332 245677777765543322222 3557888999999999999983
No 252
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=94.50 E-value=0.088 Score=62.47 Aligned_cols=63 Identities=21% Similarity=0.251 Sum_probs=49.7
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHH--HHHHh-----cCCeEEEEcccHHHHHHHHHHHHHc
Q 035988 90 PAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQ--LPAVL-----REGIALVVSPLLSLIQDQVMCLAAL 154 (692)
Q Consensus 90 ~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~--lpal~-----~~~~~lvi~Pt~~L~~q~~~~l~~~ 154 (692)
..++|-|.+|+.+ ....++|.|..|||||.+.. +.-+. .+..+|+++.|+..+.++.+++.++
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~ 72 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGAL 72 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHH
Confidence 4689999999875 35689999999999996532 22222 1358999999999999999999886
No 253
>PRK09183 transposase/IS protein; Provisional
Probab=94.45 E-value=0.78 Score=47.20 Aligned_cols=22 Identities=14% Similarity=0.268 Sum_probs=17.9
Q ss_pred HHcCCCEEEEecCCChhHHHHH
Q 035988 103 VLSGRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 103 il~g~dviv~apTGsGKTl~~~ 124 (692)
+-.+.++++.+|+|+|||....
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~ 120 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAI 120 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHH
Confidence 4467899999999999996443
No 254
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=94.45 E-value=0.064 Score=64.19 Aligned_cols=145 Identities=13% Similarity=0.083 Sum_probs=87.3
Q ss_pred CCCEEEEecCCChhHHHHHHHHHhc---------------------CCeEEEEcccHHHHHHHHHHHHHc---CCCEEEE
Q 035988 106 GRDVLVIMAAGGGKSLCYQLPAVLR---------------------EGIALVVSPLLSLIQDQVMCLAAL---GIPAHML 161 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~lpal~~---------------------~~~~lvi~Pt~~L~~q~~~~l~~~---gi~~~~~ 161 (692)
|+++++.-..|.|||.+-+.-.+.. .|.||||+|. ++..||..++.+. ++++..+
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~lKv~~Y 452 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSLLKVLLY 452 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccccceEEEE
Confidence 5678999999999998765332211 3689999998 5556677777654 4566665
Q ss_pred ecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHH---------Hhhhh------cCCceEEEEeCcccccc
Q 035988 162 TSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKL---------EKCHH------AGRLSLISIDEAHCCSQ 226 (692)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l---------~~~~~------~~~l~~iVIDEaH~l~~ 226 (692)
.|-........ ..+ ..+|||++|+..|..-..+-+.. .+... .-.+=.|++|||+.+-.
T Consensus 453 ~Girk~~~~~~--~el----~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves 526 (1394)
T KOG0298|consen 453 FGIRKTFWLSP--FEL----LQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES 526 (1394)
T ss_pred echhhhcccCc--hhh----hccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc
Confidence 55322211110 111 17999999999886422211100 00000 01223489999998653
Q ss_pred cCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHH
Q 035988 227 WGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDL 265 (692)
Q Consensus 227 ~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i 265 (692)
- -.....+....|.....++|+||-.. ..++
T Consensus 527 s-------sS~~a~M~~rL~~in~W~VTGTPiq~-Iddl 557 (1394)
T KOG0298|consen 527 S-------SSAAAEMVRRLHAINRWCVTGTPIQK-IDDL 557 (1394)
T ss_pred h-------HHHHHHHHHHhhhhceeeecCCchhh-hhhh
Confidence 1 13334566667777889999999776 4444
No 255
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.35 E-value=1.2 Score=58.33 Aligned_cols=207 Identities=16% Similarity=0.136 Sum_probs=107.1
Q ss_pred CCCHHHHHHHHHHHcC--CCEEEEecCCChhHHHHH--HHHHh-cCCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCC
Q 035988 91 AYRANQQEIINAVLSG--RDVLVIMAAGGGKSLCYQ--LPAVL-REGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTT 165 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~g--~dviv~apTGsGKTl~~~--lpal~-~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~ 165 (692)
.+++.|++++..++.. +-.++.++.|+|||.+.. +-++. .+..+++++||-.-+....+.. |+.+..+.
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~~~~~~G~~V~~lAPTgrAA~~L~e~~---g~~A~Ti~--- 502 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLHLASEQGYEIQIITAGSLSAQELRQKI---PRLASTFI--- 502 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHh---cchhhhHH---
Confidence 5889999999999976 458999999999997543 21222 3678999999977555433321 32221110
Q ss_pred ChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHHHHh-h
Q 035988 166 SKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKT-Q 244 (692)
Q Consensus 166 ~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~-~ 244 (692)
.....+..+ .-..|.. .|. .....+..-++||||||-.++.+. +..|.. .
T Consensus 503 ------~~l~~l~~~-----~~~~tv~------~fl---~~~~~l~~~~vlIVDEAsMl~~~~---------~~~Ll~~a 553 (1960)
T TIGR02760 503 ------TWVKNLFND-----DQDHTVQ------GLL---DKSSPFSNKDIFVVDEANKLSNNE---------LLKLIDKA 553 (1960)
T ss_pred ------HHHHhhccc-----ccchhHH------Hhh---cccCCCCCCCEEEEECCCCCCHHH---------HHHHHHHH
Confidence 001100000 0011111 122 111223457899999999875321 222332 2
Q ss_pred -CCCCCEEEEecc------cchhhHHHHHHHhcccceEEEeccCCCCcceEEEeeccCcchHHHHHHHHHHHHhCCCCCc
Q 035988 245 -FPDVPMMALTAT------ATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSES 317 (692)
Q Consensus 245 -~~~~~~i~lSAT------~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~ 317 (692)
..+.++|++-=+ -+..+...+.+ -+++.. .+.......+-. .+... ........+.+.+.........
T Consensus 554 ~~~garvVlvGD~~QL~sV~aG~~f~~L~~-~gv~t~-~l~~i~rq~~~v-~i~~~--~~~~r~~~ia~~y~~L~~~r~~ 628 (1960)
T TIGR02760 554 EQHNSKLILLNDSAQRQGMSAGSAIDLLKE-GGVTTY-AWVDTKQQKASV-EISEA--VDKLRVDYIASAWLDLTPDRQN 628 (1960)
T ss_pred hhcCCEEEEEcChhhcCccccchHHHHHHH-CCCcEE-EeecccccCcce-eeecc--CchHHHHHHHHHHHhcccccCc
Confidence 246777766433 23345555444 233322 222111111111 12211 1223344455544444434556
Q ss_pred eEEEEeccchHHHHHHHHHH
Q 035988 318 GIVYCFSRKECEQVAQELRQ 337 (692)
Q Consensus 318 ~IIf~~s~~~~e~l~~~L~~ 337 (692)
++|+..+.++...|....+.
T Consensus 629 tliv~~t~~dr~~Ln~~iR~ 648 (1960)
T TIGR02760 629 SQVLATTHREQQDLTQIIRN 648 (1960)
T ss_pred eEEEcCCcHHHHHHHHHHHH
Confidence 89999998888888777754
No 256
>PF13173 AAA_14: AAA domain
Probab=94.35 E-value=0.25 Score=44.75 Aligned_cols=42 Identities=24% Similarity=0.402 Sum_probs=25.7
Q ss_pred CceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhh
Q 035988 212 RLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKV 261 (692)
Q Consensus 212 ~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~ 261 (692)
.-.+++|||+|.+.+|. ..+..+....++.++ .+|++.....
T Consensus 61 ~~~~i~iDEiq~~~~~~-------~~lk~l~d~~~~~~i-i~tgS~~~~l 102 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWE-------DALKFLVDNGPNIKI-ILTGSSSSLL 102 (128)
T ss_pred CCcEEEEehhhhhccHH-------HHHHHHHHhccCceE-EEEccchHHH
Confidence 56789999999998765 233344444455454 4555544433
No 257
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.34 E-value=0.51 Score=48.61 Aligned_cols=33 Identities=12% Similarity=0.162 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHH----cCC-CEEEEecCCChhHHHHHH
Q 035988 93 RANQQEIINAVL----SGR-DVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 93 r~~Q~~ai~~il----~g~-dviv~apTGsGKTl~~~l 125 (692)
++.+.+++..+. .+. .+++.||+|+|||.....
T Consensus 25 ~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~ 62 (269)
T TIGR03015 25 SKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRN 62 (269)
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 455555655543 233 488999999999986653
No 258
>PRK14873 primosome assembly protein PriA; Provisional
Probab=94.31 E-value=0.16 Score=59.21 Aligned_cols=87 Identities=15% Similarity=0.200 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHC-C-CceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccc
Q 035988 301 IDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQR-G-ISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMG 378 (692)
Q Consensus 301 ~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~-g-~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~G 378 (692)
.+...+.+...+..++.+||.++.+..+.++...|+.. | ..+..+|+++++.+|.+......+|+.+|+|.|-.+-.
T Consensus 174 Tevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAvF- 252 (665)
T PRK14873 174 ARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAVF- 252 (665)
T ss_pred HHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeEE-
Confidence 34444555444447889999999999999999999876 4 67999999999999999999999999999999975321
Q ss_pred cCCCCccEEE
Q 035988 379 INKPDVRFVI 388 (692)
Q Consensus 379 IDip~v~~VI 388 (692)
.-+++...||
T Consensus 253 aP~~~LgLII 262 (665)
T PRK14873 253 APVEDLGLVA 262 (665)
T ss_pred eccCCCCEEE
Confidence 2333444444
No 259
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.27 E-value=0.34 Score=54.20 Aligned_cols=21 Identities=29% Similarity=0.626 Sum_probs=16.8
Q ss_pred CCEEEEecCCChhHHHHHHHH
Q 035988 107 RDVLVIMAAGGGKSLCYQLPA 127 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~lpa 127 (692)
+..|+.||.|+|||.++.+-+
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilA 56 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIIS 56 (491)
T ss_pred ceEEEECCCCccHHHHHHHHH
Confidence 358999999999998765543
No 260
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.27 E-value=0.32 Score=52.66 Aligned_cols=60 Identities=12% Similarity=0.205 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHHHHh-cCCCccHHHHHHHHHhcccCC-CcccCHHHHHHHHHHHHHcCccc
Q 035988 479 AGHAQCIISLLQDIQD-NNQRLTMLQLVDKMKIKLKEI-DSDLKREEIEQLVLQLIIDRVLV 538 (692)
Q Consensus 479 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~l~~~~~l~ 538 (692)
+.+.+.++.++..+.+ ....++...+.+.++--+... ....+..++...+..|-..|++.
T Consensus 287 ~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~l~~~gli~ 348 (365)
T TIGR02928 287 PTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCEDIGVDPLTQRRISDLLNELDMLGLVE 348 (365)
T ss_pred CHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCeE
Confidence 3455555655554433 345678888877544322211 25688899999999999999983
No 261
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.26 E-value=0.16 Score=45.71 Aligned_cols=17 Identities=24% Similarity=0.313 Sum_probs=14.0
Q ss_pred EEEEecCCChhHHHHHH
Q 035988 109 VLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 109 viv~apTGsGKTl~~~l 125 (692)
+++.+|+|+|||.....
T Consensus 1 ill~G~~G~GKT~l~~~ 17 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARA 17 (132)
T ss_dssp EEEESSTTSSHHHHHHH
T ss_pred CEEECcCCCCeeHHHHH
Confidence 58999999999985543
No 262
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=94.26 E-value=0.046 Score=62.75 Aligned_cols=58 Identities=17% Similarity=0.218 Sum_probs=50.8
Q ss_pred CCEEEEecCCChhHHHHHHHHHhc-CCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecC
Q 035988 107 RDVLVIMAAGGGKSLCYQLPAVLR-EGIALVVSPLLSLIQDQVMCLAALGIPAHMLTST 164 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~lpal~~-~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~ 164 (692)
.+++++||||||||..+.+|.++. ++.++|+=|--++........++.|-++.+++-.
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~~~S~VV~DpKGEl~~~Ta~~R~~~G~~V~vfdP~ 217 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFWEDSVVVHDIKLENYELTSGWREKQGQKVFVWEPA 217 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 579999999999999999999876 5788888899999999998888889888877653
No 263
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.21 E-value=0.59 Score=51.37 Aligned_cols=53 Identities=19% Similarity=0.103 Sum_probs=30.3
Q ss_pred CEEEEecCCChhHHHHH-HHHHh--cCCeEEEEc--ccHHHHHHHHHHHH-HcCCCEEE
Q 035988 108 DVLVIMAAGGGKSLCYQ-LPAVL--REGIALVVS--PLLSLIQDQVMCLA-ALGIPAHM 160 (692)
Q Consensus 108 dviv~apTGsGKTl~~~-lpal~--~~~~~lvi~--Pt~~L~~q~~~~l~-~~gi~~~~ 160 (692)
-+.+++++|+|||.+.. +...+ .+.++++++ |.|.-+.+|.+.+. ..++++..
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~ 160 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYG 160 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEe
Confidence 47899999999986543 33322 233445444 34655556555444 34555543
No 264
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=94.05 E-value=2.2 Score=48.56 Aligned_cols=119 Identities=19% Similarity=0.227 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHhCC-CCCceEEEEeccchHHHHHHHHHHCCC-------ceeEeccCCCHHHHHHHHHHHh----cCCC
Q 035988 299 VVIDEIAKYIQESYP-NSESGIVYCFSRKECEQVAQELRQRGI-------SADYYHADMDINAREKVHMRWS----KNKL 366 (692)
Q Consensus 299 ~~~~~l~~~l~~~~~-~~~~~IIf~~s~~~~e~l~~~L~~~g~-------~v~~~h~~~~~~eR~~~~~~f~----~g~~ 366 (692)
..++.|-..+..... -.+-+++|++|......+.+.+...|+ +..++-..-+ -..+++.|. .|.-
T Consensus 612 ~~l~~l~~~~~nL~~~VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~G 688 (821)
T KOG1133|consen 612 EMIKDLGSSISNLSNAVPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRG 688 (821)
T ss_pred HHHHHHHHHHHHHHhhCCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCC
Confidence 445555555543321 237789999999999999999987654 3334444433 344555554 4555
Q ss_pred cEEEec--cccccccCCCC--ccEEEEeCCCCC--------------------------------HHHHHHHHhhcCCCC
Q 035988 367 QVIVGT--VAFGMGINKPD--VRFVIHHSLSKS--------------------------------VETYYQESGRAGRDG 410 (692)
Q Consensus 367 ~ILVaT--~~~~~GIDip~--v~~VI~~~~P~s--------------------------------~~~y~Qr~GRagR~G 410 (692)
.+|+|. .-+++|||+.| .|.|+.+++|.. +...-|-+|||-|.-
T Consensus 689 aiLlaVVGGKlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~ 768 (821)
T KOG1133|consen 689 AILLAVVGGKLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHR 768 (821)
T ss_pred eEEEEEeccccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 677665 45899999987 578999998851 223458899999987
Q ss_pred CCCeeEeecC
Q 035988 411 LPSECLLFFR 420 (692)
Q Consensus 411 ~~g~~i~l~~ 420 (692)
++=.++++++
T Consensus 769 ~DYA~i~LlD 778 (821)
T KOG1133|consen 769 KDYASIYLLD 778 (821)
T ss_pred ccceeEEEeh
Confidence 7755555554
No 265
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.99 E-value=0.57 Score=47.42 Aligned_cols=117 Identities=21% Similarity=0.198 Sum_probs=54.1
Q ss_pred cCCCEEEEecCCChhHHHHH-H--HHHhc-CCeEEEEcc---cHHHHHHHHHHHHHcCCCEEEE-ecCCChhHHHHHHHH
Q 035988 105 SGRDVLVIMAAGGGKSLCYQ-L--PAVLR-EGIALVVSP---LLSLIQDQVMCLAALGIPAHML-TSTTSKEDEKFIYKA 176 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~~-l--pal~~-~~~~lvi~P---t~~L~~q~~~~l~~~gi~~~~~-~~~~~~~~~~~~~~~ 176 (692)
.|.-+++.|+||+|||...+ + -+... +..+++++. ...++...... ..++....+ .+.............
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRLLAS--ESGISLSKLRTGSLSDEDWERLAEA 89 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHHHHHH--hcCCCHHHHhcCCCCHHHHHHHHHH
Confidence 45668999999999996432 2 12233 677888773 34444433221 223332211 112222111111111
Q ss_pred HHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCccccc
Q 035988 177 LEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCS 225 (692)
Q Consensus 177 l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~ 225 (692)
..... ...+.+.....+ ....+...+........+++||||=.+.+.
T Consensus 90 ~~~~~-~~~~~i~~~~~~-~~~~l~~~i~~~~~~~~~~~vvID~l~~l~ 136 (242)
T cd00984 90 IGELK-ELPIYIDDSSSL-TVSDIRSRARRLKKEHGLGLIVIDYLQLMS 136 (242)
T ss_pred HHHHh-cCCEEEeCCCCC-CHHHHHHHHHHHHHhcCCCEEEEcCchhcC
Confidence 11111 223333222111 112333333333333478999999999775
No 266
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.95 E-value=2.9 Score=43.56 Aligned_cols=19 Identities=21% Similarity=0.344 Sum_probs=15.3
Q ss_pred CCCEEEEecCCChhHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~ 124 (692)
++.+++++|||+|||.+..
T Consensus 194 ~~vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLA 212 (282)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568899999999996543
No 267
>PRK08084 DNA replication initiation factor; Provisional
Probab=93.95 E-value=0.47 Score=48.06 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=14.5
Q ss_pred CCEEEEecCCChhHHHH
Q 035988 107 RDVLVIMAAGGGKSLCY 123 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~ 123 (692)
..+++.||+|+|||-..
T Consensus 46 ~~l~l~Gp~G~GKThLl 62 (235)
T PRK08084 46 GYIYLWSREGAGRSHLL 62 (235)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56899999999999643
No 268
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.94 E-value=0.55 Score=52.18 Aligned_cols=17 Identities=18% Similarity=0.262 Sum_probs=14.9
Q ss_pred EEEEecCCChhHHHHHH
Q 035988 109 VLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 109 viv~apTGsGKTl~~~l 125 (692)
+++.||.|+|||.++.+
T Consensus 43 ~Lf~GP~GtGKTTlAri 59 (484)
T PRK14956 43 YIFFGPRGVGKTTIARI 59 (484)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 69999999999987654
No 269
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=93.94 E-value=0.93 Score=49.04 Aligned_cols=55 Identities=9% Similarity=0.179 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhcccCCCcccCHHHHHHHHHHHHHcCcc
Q 035988 478 LAGHAQCIISLLQDIQDNNQRLTMLQLVDKMKIKLKEIDSDLKREEIEQLVLQLIIDRVL 537 (692)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~l 537 (692)
.+.+.+.++..+.... ..++...+.+.++..+...+. +...+..++..|-..|++
T Consensus 277 L~~~~ki~L~~i~~~~---~~~~~~~~y~~y~~~~~~~~~--~~~~~~~ii~~L~~lgiv 331 (366)
T COG1474 277 LPLHQKIVLLAIVELT---VEISTGELYDVYESLCERLRT--SQRRFSDIISELEGLGIV 331 (366)
T ss_pred CCHhHHHHHHHHHHhc---CCCChHHHHHHHHHHHhhhCc--hHHHHHHHHHHHHhcCeE
Confidence 4456666666665432 677888888888775443333 888888999999999988
No 270
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.92 E-value=0.16 Score=60.09 Aligned_cols=17 Identities=29% Similarity=0.260 Sum_probs=14.5
Q ss_pred EEEEecCCChhHHHHHH
Q 035988 109 VLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 109 viv~apTGsGKTl~~~l 125 (692)
.|+.||.|+|||.+..+
T Consensus 41 yLFtGPpGtGKTTLARi 57 (944)
T PRK14949 41 YLFTGTRGVGKTSLARL 57 (944)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 58999999999987654
No 271
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.84 E-value=3 Score=49.16 Aligned_cols=19 Identities=21% Similarity=0.288 Sum_probs=15.3
Q ss_pred CCCEEEEecCCChhHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~ 124 (692)
++-+.+++|||+|||.+..
T Consensus 185 g~Vi~lVGpnGvGKTTTia 203 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTA 203 (767)
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 3457899999999997654
No 272
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=93.78 E-value=1.4 Score=54.06 Aligned_cols=56 Identities=18% Similarity=0.061 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHHHc-CCCEEEEecCCChhHHHHHH--HHH-hcCCeEEEEcccHHHHHH
Q 035988 91 AYRANQQEIINAVLS-GRDVLVIMAAGGGKSLCYQL--PAV-LREGIALVVSPLLSLIQD 146 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~-g~dviv~apTGsGKTl~~~l--pal-~~~~~~lvi~Pt~~L~~q 146 (692)
.+++-|.+++..+.. ++-+++.++-|+|||.+.-. -++ ..+..++.++||-.-+..
T Consensus 381 ~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~ 440 (1102)
T PRK13826 381 RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEG 440 (1102)
T ss_pred CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHH
Confidence 689999999999865 45589999999999975432 112 235688889998665544
No 273
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=93.74 E-value=0.46 Score=52.87 Aligned_cols=17 Identities=18% Similarity=0.335 Sum_probs=14.1
Q ss_pred CCEEEEecCCChhHHHH
Q 035988 107 RDVLVIMAAGGGKSLCY 123 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~ 123 (692)
+.+++.||+|+|||...
T Consensus 142 npl~L~G~~G~GKTHLl 158 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLM 158 (445)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 35899999999999643
No 274
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.64 E-value=0.98 Score=46.82 Aligned_cols=51 Identities=18% Similarity=0.241 Sum_probs=28.2
Q ss_pred CCEEEEecCCChhHHHHH-HHH-H-hcCCeEEEEc--ccHHHHHHHHH-HHHHcCCC
Q 035988 107 RDVLVIMAAGGGKSLCYQ-LPA-V-LREGIALVVS--PLLSLIQDQVM-CLAALGIP 157 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~-lpa-l-~~~~~~lvi~--Pt~~L~~q~~~-~l~~~gi~ 157 (692)
+-+++++|+|+|||.+.. +.. + ..+.+++++. +.|.-+.++.. ..+..|+.
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~ 129 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVD 129 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeE
Confidence 457788999999997543 222 2 2234555554 34444444443 34455644
No 275
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=93.60 E-value=0.22 Score=60.33 Aligned_cols=56 Identities=21% Similarity=0.118 Sum_probs=42.2
Q ss_pred CCCHHHHHHHHHHHcCCC-EEEEecCCChhHHHHHH--HHHh-cCCeEEEEcccHHHHHH
Q 035988 91 AYRANQQEIINAVLSGRD-VLVIMAAGGGKSLCYQL--PAVL-REGIALVVSPLLSLIQD 146 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~g~d-viv~apTGsGKTl~~~l--pal~-~~~~~lvi~Pt~~L~~q 146 (692)
.+++-|.+|+..++.+++ +++.++.|+|||...-. -++. .+..++.++||---+..
T Consensus 346 ~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~ 405 (988)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAEN 405 (988)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHH
Confidence 689999999999998765 68999999999975321 1122 35688889999765543
No 276
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.60 E-value=0.73 Score=52.92 Aligned_cols=18 Identities=22% Similarity=0.239 Sum_probs=14.8
Q ss_pred CEEEEecCCChhHHHHHH
Q 035988 108 DVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 108 dviv~apTGsGKTl~~~l 125 (692)
-+|+.+|.|.|||.+..+
T Consensus 40 A~LFtGP~GvGKTTLAri 57 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRI 57 (700)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 369999999999976644
No 277
>KOG2206 consensus Exosome 3'-5' exoribonuclease complex, subunit PM/SCL-100 (Rrp6) [Translation, ribosomal structure and biogenesis]
Probab=93.56 E-value=0.21 Score=55.20 Aligned_cols=70 Identities=17% Similarity=0.113 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCceEeccHHHHHHHHHcCCCChhhcchhhhhhcc--cchhhhhhhHHHHHHHHhhh
Q 035988 574 SSALEFELDELRKELASISGGILPHSVLSSQLIRLISARKPSTMEEASSNHLEKII--GKLKTGKYGSRILEVISKCG 649 (692)
Q Consensus 574 ~~~l~~~l~~~r~~~a~~~~~~~~~~i~~~~~l~~~~~~~p~~~~~~~~~~l~~i~--g~~k~~~~g~~~l~~~~~~~ 649 (692)
...++.+|.+||.-+|+. .+=.|+.|++|++|..||+.+|.+... |.... =+.-+++--.+|+-+|+...
T Consensus 406 q~~~l~~L~~wRd~iARa-eDES~~yVlpN~~ll~l~e~~P~~v~g-----l~~~ln~~~p~vkq~~~~~~~ii~~a~ 477 (687)
T KOG2206|consen 406 QLDVLRALLRWRDFIARA-EDESVHYVLPNDQLLKLAEERPDTVDG-----LLGGLNRLSPLVKQNVMDFLYIIRSAG 477 (687)
T ss_pred HHHHHHHHHHHHHHHHhh-ccCCCceecccHHHHHHHHHCCccHHH-----HHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence 677999999999999999 899999999999999999999999999 88771 12345566668888888765
No 278
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=93.53 E-value=0.17 Score=59.01 Aligned_cols=73 Identities=16% Similarity=0.239 Sum_probs=63.1
Q ss_pred HHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHC-CCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccc
Q 035988 302 DEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQR-GISADYYHADMDINAREKVHMRWSKNKLQVIVGTVA 374 (692)
Q Consensus 302 ~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~-g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~ 374 (692)
+..++.+.+.+..|+.+||.++.+....++...|+.. |.++..+|+++++.+|.....+..+|+.+|+|.|-.
T Consensus 232 EvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRS 305 (730)
T COG1198 232 EVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRS 305 (730)
T ss_pred HHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEech
Confidence 4444444444448899999999999999999999876 899999999999999999999999999999999964
No 279
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=93.53 E-value=0.53 Score=49.98 Aligned_cols=74 Identities=11% Similarity=0.078 Sum_probs=40.2
Q ss_pred CccEEEeChh-----hhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEeccc
Q 035988 183 ELKMLYVTPE-----KISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATA 257 (692)
Q Consensus 183 ~~~Ili~Tpe-----~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~ 257 (692)
.+|+.+..|+ .+.....+.+.+......+....+|||+||.|..-. -..|-+..+..|..-++.|+++-
T Consensus 73 HPD~~~i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~A------aNaLLKtLEEPp~~~~fiL~t~~ 146 (325)
T PRK06871 73 HPDFHILEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAA------ANALLKTLEEPRPNTYFLLQADL 146 (325)
T ss_pred CCCEEEEccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHH------HHHHHHHhcCCCCCeEEEEEECC
Confidence 5677776663 122222333333333345678999999999986422 22333444555554455556555
Q ss_pred chhhH
Q 035988 258 TQKVQ 262 (692)
Q Consensus 258 ~~~~~ 262 (692)
+..+.
T Consensus 147 ~~~ll 151 (325)
T PRK06871 147 SAALL 151 (325)
T ss_pred hHhCc
Confidence 44443
No 280
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.51 E-value=0.64 Score=53.46 Aligned_cols=18 Identities=22% Similarity=0.241 Sum_probs=15.1
Q ss_pred CEEEEecCCChhHHHHHH
Q 035988 108 DVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 108 dviv~apTGsGKTl~~~l 125 (692)
-+|+.||.|+|||.++.+
T Consensus 39 AyLF~GPpGvGKTTlAri 56 (702)
T PRK14960 39 AYLFTGTRGVGKTTIARI 56 (702)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 369999999999987654
No 281
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=93.47 E-value=0.58 Score=48.18 Aligned_cols=19 Identities=16% Similarity=0.260 Sum_probs=15.8
Q ss_pred CCEEEEecCCChhHHHHHH
Q 035988 107 RDVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~l 125 (692)
.++++.+|+|+|||..+-+
T Consensus 43 ~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred ceEEEEcCCCCCHHHHHHH
Confidence 4689999999999986543
No 282
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=93.37 E-value=0.086 Score=61.25 Aligned_cols=57 Identities=18% Similarity=0.229 Sum_probs=48.6
Q ss_pred CCEEEEecCCChhHHHHHHHHHhc-CCeEEEEcccHHHHHHHHHHHHHcCCCEEEEec
Q 035988 107 RDVLVIMAAGGGKSLCYQLPAVLR-EGIALVVSPLLSLIQDQVMCLAALGIPAHMLTS 163 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~lpal~~-~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~ 163 (692)
.+++++||||||||..+.+|.++. .+.+||+=|--++........++.|-.+..++.
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~~gS~VV~DpKGE~~~~Ta~~R~~~G~~V~~FnP 197 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTFKGSVIALDVKGELFELTSRARKASGDAVFKFAP 197 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcCCCCEEEEeCCchHHHHHHHHHHhCCCEEEEecC
Confidence 479999999999999999999876 578888889999998888877888877776654
No 283
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=93.34 E-value=0.48 Score=47.60 Aligned_cols=17 Identities=29% Similarity=0.284 Sum_probs=14.5
Q ss_pred CCCEEEEecCCChhHHH
Q 035988 106 GRDVLVIMAAGGGKSLC 122 (692)
Q Consensus 106 g~dviv~apTGsGKTl~ 122 (692)
++.+++.+|+|+|||..
T Consensus 42 ~~~~~l~G~~G~GKT~L 58 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHL 58 (227)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 45699999999999963
No 284
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=93.31 E-value=0.39 Score=49.54 Aligned_cols=33 Identities=18% Similarity=0.189 Sum_probs=23.9
Q ss_pred HHHHHHHHHHc---C---CCEEEEecCCChhHHHHHHHH
Q 035988 95 NQQEIINAVLS---G---RDVLVIMAAGGGKSLCYQLPA 127 (692)
Q Consensus 95 ~Q~~ai~~il~---g---~dviv~apTGsGKTl~~~lpa 127 (692)
+|..++..+.+ + -+.+..+|.|+|||-+..+.+
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafa 78 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFA 78 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHH
Confidence 56666665542 2 358999999999998876544
No 285
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.31 E-value=2.9 Score=43.17 Aligned_cols=128 Identities=15% Similarity=0.164 Sum_probs=65.8
Q ss_pred cCCCEEEEecCCChhHHHHHHHH-Hhc--CCeEEEEcc-c--HHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHH
Q 035988 105 SGRDVLVIMAAGGGKSLCYQLPA-VLR--EGIALVVSP-L--LSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALE 178 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~~lpa-l~~--~~~~lvi~P-t--~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~ 178 (692)
.+..+.+.+|+|+|||..+..-+ ... +..+.++.- + .+.+.|+.......++++...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~----------------- 136 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV----------------- 136 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEec-----------------
Confidence 34678999999999998765322 221 233433332 2 244555544444444332211
Q ss_pred hcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHHHHhh-CCCCCEEEEeccc
Q 035988 179 KGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQ-FPDVPMMALTATA 257 (692)
Q Consensus 179 ~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~-~~~~~~i~lSAT~ 257 (692)
.+|+.+. ..+..+. ...+.++++||-+=+... -...+..+..+... .|+..++.++||.
T Consensus 137 ----------~~~~~l~---~~l~~l~---~~~~~D~ViIDt~Gr~~~----~~~~l~el~~~~~~~~~~~~~LVl~a~~ 196 (270)
T PRK06731 137 ----------RDEAAMT---RALTYFK---EEARVDYILIDTAGKNYR----ASETVEEMIETMGQVEPDYICLTLSASM 196 (270)
T ss_pred ----------CCHHHHH---HHHHHHH---hcCCCCEEEEECCCCCcC----CHHHHHHHHHHHhhhCCCeEEEEEcCcc
Confidence 2333222 1122221 224689999999876421 12334444444333 3444467899998
Q ss_pred chhhHHHHHHHh
Q 035988 258 TQKVQNDLMEML 269 (692)
Q Consensus 258 ~~~~~~~i~~~l 269 (692)
.......+.+.+
T Consensus 197 ~~~d~~~~~~~f 208 (270)
T PRK06731 197 KSKDMIEIITNF 208 (270)
T ss_pred CHHHHHHHHHHh
Confidence 765554454443
No 286
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=93.25 E-value=0.88 Score=52.48 Aligned_cols=18 Identities=17% Similarity=0.274 Sum_probs=15.5
Q ss_pred CEEEEecCCChhHHHHHH
Q 035988 108 DVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 108 dviv~apTGsGKTl~~~l 125 (692)
.+|+.+|.|+|||.++.+
T Consensus 48 a~L~~Gp~GvGKTt~Ar~ 65 (598)
T PRK09111 48 AFMLTGVRGVGKTTTARI 65 (598)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 589999999999987654
No 287
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.25 E-value=1.8 Score=42.03 Aligned_cols=135 Identities=16% Similarity=0.136 Sum_probs=67.2
Q ss_pred HcCCCEEEEecCCChhHHHHHHH---HHhcCCeEEEEcccHHHH-HHHHHHHHHc-CCCEEEEecCCChhHHHHHHHHHH
Q 035988 104 LSGRDVLVIMAAGGGKSLCYQLP---AVLREGIALVVSPLLSLI-QDQVMCLAAL-GIPAHMLTSTTSKEDEKFIYKALE 178 (692)
Q Consensus 104 l~g~dviv~apTGsGKTl~~~lp---al~~~~~~lvi~Pt~~L~-~q~~~~l~~~-gi~~~~~~~~~~~~~~~~~~~~l~ 178 (692)
+....+++..++|-|||.+++-- ++-++.+++++-=.+.-. .--...+.+. ++.......+......
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~-------- 91 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQ-------- 91 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCC--------
Confidence 35668999999999999887643 344566777654333220 1112222222 2222111110000000
Q ss_pred hcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccc
Q 035988 179 KGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATAT 258 (692)
Q Consensus 179 ~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~ 258 (692)
. ..+.......-++..........+++||+||.=....+| +-+.-.-+..+ ...|.-.-+.+|.--.
T Consensus 92 ----~------~~e~~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~g--li~~eevi~~L-~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 92 ----D------RERDIAAAREGWEEAKRMLADESYDLVVLDELTYALKYG--YLDVEEVLEAL-NARPGMQHVVITGRGA 158 (191)
T ss_pred ----C------cHHHHHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCC--CccHHHHHHHH-HcCCCCCEEEEECCCC
Confidence 0 001011111223333344445689999999999999888 54443333344 4445444566666654
Q ss_pred h
Q 035988 259 Q 259 (692)
Q Consensus 259 ~ 259 (692)
+
T Consensus 159 p 159 (191)
T PRK05986 159 P 159 (191)
T ss_pred C
Confidence 4
No 288
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.24 E-value=0.54 Score=48.42 Aligned_cols=21 Identities=29% Similarity=0.339 Sum_probs=15.5
Q ss_pred EEEEecCCChhHHH--HHHHHHh
Q 035988 109 VLVIMAAGGGKSLC--YQLPAVL 129 (692)
Q Consensus 109 viv~apTGsGKTl~--~~lpal~ 129 (692)
++|.+|||||||.+ .++--+.
T Consensus 128 ILVTGpTGSGKSTTlAamId~iN 150 (353)
T COG2805 128 ILVTGPTGSGKSTTLAAMIDYIN 150 (353)
T ss_pred EEEeCCCCCcHHHHHHHHHHHHh
Confidence 78999999999854 4444443
No 289
>PRK05642 DNA replication initiation factor; Validated
Probab=93.24 E-value=0.51 Score=47.75 Aligned_cols=16 Identities=19% Similarity=0.129 Sum_probs=13.6
Q ss_pred CCEEEEecCCChhHHH
Q 035988 107 RDVLVIMAAGGGKSLC 122 (692)
Q Consensus 107 ~dviv~apTGsGKTl~ 122 (692)
..++++||+|+|||-.
T Consensus 46 ~~l~l~G~~G~GKTHL 61 (234)
T PRK05642 46 SLIYLWGKDGVGRSHL 61 (234)
T ss_pred CeEEEECCCCCCHHHH
Confidence 4588999999999963
No 290
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.21 E-value=0.71 Score=52.27 Aligned_cols=17 Identities=24% Similarity=0.266 Sum_probs=14.6
Q ss_pred EEEEecCCChhHHHHHH
Q 035988 109 VLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 109 viv~apTGsGKTl~~~l 125 (692)
.|+.||.|+|||.++.+
T Consensus 41 ~Lf~Gp~G~GKTt~A~~ 57 (509)
T PRK14958 41 YLFTGTRGVGKTTISRI 57 (509)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 69999999999976654
No 291
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=93.14 E-value=0.56 Score=50.13 Aligned_cols=33 Identities=24% Similarity=0.099 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHc--C---CCEEEEecCCChhHHHHH
Q 035988 92 YRANQQEIINAVLS--G---RDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 92 ~r~~Q~~ai~~il~--g---~dviv~apTGsGKTl~~~ 124 (692)
++|+|...+..+.. + .-.++.+|.|.||+..+.
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~ 39 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQ 39 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHH
Confidence 35777777777654 2 247899999999996554
No 292
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=93.11 E-value=0.99 Score=50.95 Aligned_cols=19 Identities=21% Similarity=0.216 Sum_probs=16.0
Q ss_pred CEEEEecCCChhHHHHHHH
Q 035988 108 DVLVIMAAGGGKSLCYQLP 126 (692)
Q Consensus 108 dviv~apTGsGKTl~~~lp 126 (692)
.+++.||.|+|||.++.+-
T Consensus 45 a~Lf~Gp~G~GKTT~Aril 63 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARII 63 (507)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 5899999999999876543
No 293
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=93.11 E-value=0.37 Score=56.32 Aligned_cols=78 Identities=17% Similarity=0.192 Sum_probs=66.9
Q ss_pred CCCceEEEEeccchHHHHHHHHHHC----CCceeEeccCCCHHHHHHHHHHHhcCCCcEEEecccc-ccccCCCCccEEE
Q 035988 314 NSESGIVYCFSRKECEQVAQELRQR----GISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAF-GMGINKPDVRFVI 388 (692)
Q Consensus 314 ~~~~~IIf~~s~~~~e~l~~~L~~~----g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~-~~GIDip~v~~VI 388 (692)
.+.+++|.++|+.-|.++++.+++. |+++..+||+++..+|....+...+|+.+|+|+|... ...+++.++.+||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 6778999999999999988877653 7899999999999999999999999999999999864 4457778888887
Q ss_pred EeC
Q 035988 389 HHS 391 (692)
Q Consensus 389 ~~~ 391 (692)
.-.
T Consensus 363 IDE 365 (630)
T TIGR00643 363 IDE 365 (630)
T ss_pred Eec
Confidence 433
No 294
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.10 E-value=0.49 Score=51.34 Aligned_cols=17 Identities=29% Similarity=0.264 Sum_probs=14.5
Q ss_pred EEEEecCCChhHHHHHH
Q 035988 109 VLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 109 viv~apTGsGKTl~~~l 125 (692)
+++.||.|+|||..+..
T Consensus 41 ~L~~Gp~G~GKTtla~~ 57 (363)
T PRK14961 41 WLLSGTRGVGKTTIARL 57 (363)
T ss_pred EEEecCCCCCHHHHHHH
Confidence 68999999999986644
No 295
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=92.99 E-value=0.91 Score=50.78 Aligned_cols=17 Identities=18% Similarity=0.256 Sum_probs=14.3
Q ss_pred CCEEEEecCCChhHHHH
Q 035988 107 RDVLVIMAAGGGKSLCY 123 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~ 123 (692)
..+++.||+|+|||...
T Consensus 149 ~~l~l~G~~G~GKThL~ 165 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL 165 (450)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35899999999999744
No 296
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.97 E-value=1.4 Score=48.42 Aligned_cols=56 Identities=11% Similarity=0.110 Sum_probs=31.7
Q ss_pred CCceEEEEeCcccccccCCCchHHHHHHHHHHhhC-CCCCEEEEecccchhhHHHHHHHhc
Q 035988 211 GRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQF-PDVPMMALTATATQKVQNDLMEMLH 270 (692)
Q Consensus 211 ~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~ 270 (692)
.+.+.++||.+-+ .+.-......+..+.... +...+++++||........+...+.
T Consensus 268 ~~~d~VLIDTaGr----sqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~ 324 (420)
T PRK14721 268 RGKHMVLIDTVGM----SQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQ 324 (420)
T ss_pred cCCCEEEecCCCC----CcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhc
Confidence 4667888887622 111122234444443322 3345688999988877776665543
No 297
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=92.97 E-value=0.12 Score=59.79 Aligned_cols=58 Identities=22% Similarity=0.252 Sum_probs=49.3
Q ss_pred CCEEEEecCCChhHHHHHHHHHhc-CCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecC
Q 035988 107 RDVLVIMAAGGGKSLCYQLPAVLR-EGIALVVSPLLSLIQDQVMCLAALGIPAHMLTST 164 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~lpal~~-~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~ 164 (692)
.++++.||||+|||..+.+|.++. ++.++|+=|--++..-.....++.|-++.++.-.
T Consensus 225 ~H~Lv~ApTgsGKt~g~VIPnLL~~~gS~VV~DpKgEl~~~Ta~~R~~~G~~V~vfdP~ 283 (641)
T PRK13822 225 THGLVFAGSGGFKTTSVVVPTALKWGGPLVVLDPSTEVAPMVSEHRRDAGREVIVLDPT 283 (641)
T ss_pred ceEEEEeCCCCCccceEehhhhhcCCCCEEEEeCcHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 579999999999999999999876 5677888899999888887777888888777654
No 298
>PRK10867 signal recognition particle protein; Provisional
Probab=92.93 E-value=1.3 Score=48.89 Aligned_cols=53 Identities=17% Similarity=0.258 Sum_probs=30.1
Q ss_pred CEEEEecCCChhHHHHH-HHH-H-hc-CCeEEEEc--ccHHHHHHHHH-HHHHcCCCEEE
Q 035988 108 DVLVIMAAGGGKSLCYQ-LPA-V-LR-EGIALVVS--PLLSLIQDQVM-CLAALGIPAHM 160 (692)
Q Consensus 108 dviv~apTGsGKTl~~~-lpa-l-~~-~~~~lvi~--Pt~~L~~q~~~-~l~~~gi~~~~ 160 (692)
-+++++|+|+|||.+.. +.. + .. +.++++|. +.|.-+.+|.. .....|+++..
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~ 161 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFP 161 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEe
Confidence 47899999999997543 322 2 22 34444443 35555554444 44455666543
No 299
>PRK13342 recombination factor protein RarA; Reviewed
Probab=92.90 E-value=0.44 Score=52.66 Aligned_cols=18 Identities=17% Similarity=0.337 Sum_probs=15.3
Q ss_pred CEEEEecCCChhHHHHHH
Q 035988 108 DVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 108 dviv~apTGsGKTl~~~l 125 (692)
.+++.||+|+|||.....
T Consensus 38 ~ilL~GppGtGKTtLA~~ 55 (413)
T PRK13342 38 SMILWGPPGTGKTTLARI 55 (413)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 689999999999986654
No 300
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=92.90 E-value=1.2 Score=51.56 Aligned_cols=44 Identities=27% Similarity=0.337 Sum_probs=25.5
Q ss_pred cCCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccch
Q 035988 210 AGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQ 259 (692)
Q Consensus 210 ~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~ 259 (692)
.++..++||||||.|+.-. ...|.......|+.-+++|..|-+.
T Consensus 117 ~g~~KV~IIDEah~Ls~~a------~NALLKtLEEPp~~v~FIL~Tt~~~ 160 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSRHS------FNALLKTLEEPPEHVKFLLATTDPQ 160 (647)
T ss_pred cCCCEEEEEechHhCCHHH------HHHHHHHHHcCCCCeEEEEecCCcc
Confidence 3578899999999986422 2333344555554334444444433
No 301
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=92.86 E-value=0.63 Score=54.24 Aligned_cols=17 Identities=24% Similarity=0.258 Sum_probs=14.2
Q ss_pred EEEEecCCChhHHHHHH
Q 035988 109 VLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 109 viv~apTGsGKTl~~~l 125 (692)
+|+.+|.|+|||.+..+
T Consensus 41 yLFtGPpGvGKTTlAri 57 (830)
T PRK07003 41 YLFTGTRGVGKTTLSRI 57 (830)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999976543
No 302
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=92.80 E-value=0.94 Score=45.43 Aligned_cols=101 Identities=22% Similarity=0.299 Sum_probs=55.7
Q ss_pred CCCEEEEecCCChhHHH-HH--HHHHhc-CCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcC
Q 035988 106 GRDVLVIMAAGGGKSLC-YQ--LPAVLR-EGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGE 181 (692)
Q Consensus 106 g~dviv~apTGsGKTl~-~~--lpal~~-~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (692)
|..+++.+|+|+|||.- ++ .-.+.. +.++++++ +.+-..+..+.++.+|... . .....+
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs-~ee~~~~l~~~~~s~g~d~---------~------~~~~~g- 81 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS-FEEPPEELIENMKSFGWDL---------E------EYEDSG- 81 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE-SSS-HHHHHHHHHTTTS-H---------H------HHHHTT-
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE-ecCCHHHHHHHHHHcCCcH---------H------HHhhcC-
Confidence 56799999999999954 33 334556 67777777 3444577777777776421 1 111111
Q ss_pred CCccEEEeChhhh----hchHHHHHHHHhhhhcCCceEEEEeCcccc
Q 035988 182 GELKMLYVTPEKI----SKSKRFMSKLEKCHHAGRLSLISIDEAHCC 224 (692)
Q Consensus 182 ~~~~Ili~Tpe~l----~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l 224 (692)
...++=+.++.. .....+...+.........+++|||-...+
T Consensus 82 -~l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 82 -KLKIIDAFPERIGWSPNDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp -SEEEEESSGGGST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred -CEEEEecccccccccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 233333344322 122234444443333335589999998887
No 303
>PRK05973 replicative DNA helicase; Provisional
Probab=92.78 E-value=2.1 Score=43.28 Aligned_cols=65 Identities=25% Similarity=0.200 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHH---HHHHhcCCeEEEEcccHHHHHHHHHHHHHcCCC
Q 035988 91 AYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQ---LPAVLREGIALVVSPLLSLIQDQVMCLAALGIP 157 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~---lpal~~~~~~lvi~Pt~~L~~q~~~~l~~~gi~ 157 (692)
.++|. .+...-+..|.-+++.|++|+|||...+ .-+...+..+++++--- =.+|..+++..+|+.
T Consensus 50 ~~~p~-~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEe-s~~~i~~R~~s~g~d 117 (237)
T PRK05973 50 ATTPA-EELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEY-TEQDVRDRLRALGAD 117 (237)
T ss_pred CCCCH-HHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeC-CHHHHHHHHHHcCCC
Confidence 45552 2233334456778999999999996543 22234456677775432 256777788877643
No 304
>PRK04195 replication factor C large subunit; Provisional
Probab=92.75 E-value=0.93 Score=51.18 Aligned_cols=20 Identities=20% Similarity=0.237 Sum_probs=16.3
Q ss_pred CCCEEEEecCCChhHHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~l 125 (692)
.+.+++.||+|+|||.....
T Consensus 39 ~~~lLL~GppG~GKTtla~a 58 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHA 58 (482)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 45799999999999976543
No 305
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=92.65 E-value=1 Score=42.72 Aligned_cols=49 Identities=20% Similarity=0.255 Sum_probs=29.9
Q ss_pred CCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHH
Q 035988 211 GRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDL 265 (692)
Q Consensus 211 ~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i 265 (692)
....++||||||.|.. .....|....+..|..-+++|+++-...+..-+
T Consensus 101 ~~~KviiI~~ad~l~~------~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI 149 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTE------EAQNALLKTLEEPPENTYFILITNNPSKILPTI 149 (162)
T ss_dssp SSSEEEEEETGGGS-H------HHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHH
T ss_pred CCceEEEeehHhhhhH------HHHHHHHHHhcCCCCCEEEEEEECChHHChHHH
Confidence 5688999999999863 223344456666765556666666555554444
No 306
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=92.65 E-value=1.8 Score=46.64 Aligned_cols=44 Identities=14% Similarity=0.151 Sum_probs=24.8
Q ss_pred hcCCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccc
Q 035988 209 HAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATAT 258 (692)
Q Consensus 209 ~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~ 258 (692)
..+...++||||||.+..-. ...|....+..|...++++.++.+
T Consensus 138 ~~g~~rVviIDeAd~l~~~a------anaLLk~LEEpp~~~~fiLit~~~ 181 (351)
T PRK09112 138 GDGNWRIVIIDPADDMNRNA------ANAILKTLEEPPARALFILISHSS 181 (351)
T ss_pred ccCCceEEEEEchhhcCHHH------HHHHHHHHhcCCCCceEEEEECCh
Confidence 34678899999999985322 222333444455444444444443
No 307
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=92.62 E-value=1.1 Score=48.71 Aligned_cols=50 Identities=30% Similarity=0.222 Sum_probs=30.9
Q ss_pred CCCEEEEecCCChhHHHHH-HHHH--hcCCeEEEEcccHHHHHHHHHHHHHcCC
Q 035988 106 GRDVLVIMAAGGGKSLCYQ-LPAV--LREGIALVVSPLLSLIQDQVMCLAALGI 156 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~-lpal--~~~~~~lvi~Pt~~L~~q~~~~l~~~gi 156 (692)
|.-+++.+++|+|||...+ +... ..+.++++++--. -..|...+..++|+
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE-s~~qi~~Ra~rlg~ 134 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE-SPEQIKLRADRLGI 134 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc-CHHHHHHHHHHcCC
Confidence 4568999999999997443 3221 2246777776543 33455555666654
No 308
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.60 E-value=1.6 Score=47.89 Aligned_cols=17 Identities=18% Similarity=0.190 Sum_probs=14.7
Q ss_pred EEEEecCCChhHHHHHH
Q 035988 109 VLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 109 viv~apTGsGKTl~~~l 125 (692)
+|+.+|.|+|||.++.+
T Consensus 41 ~lf~Gp~G~GKtt~A~~ 57 (397)
T PRK14955 41 YIFSGLRGVGKTTAARV 57 (397)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 88999999999977654
No 309
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=92.59 E-value=5.6 Score=40.07 Aligned_cols=51 Identities=18% Similarity=0.165 Sum_probs=33.9
Q ss_pred CCCEEEEecCCChhHHHH-HHH--HHhcCCeEEEEcccHHHHHHHHHHHHHcCCC
Q 035988 106 GRDVLVIMAAGGGKSLCY-QLP--AVLREGIALVVSPLLSLIQDQVMCLAALGIP 157 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~-~lp--al~~~~~~lvi~Pt~~L~~q~~~~l~~~gi~ 157 (692)
|.-+++.+++|+|||... ++. .+..+.++++++-- +-..+..+.+..+|+.
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e-~~~~~~~~~~~~~g~~ 78 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE-NTSKSYLKQMESVKID 78 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC-CCHHHHHHHHHHCCCC
Confidence 566899999999999543 332 23446677776654 3345677777888754
No 310
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=92.58 E-value=0.18 Score=48.43 Aligned_cols=116 Identities=22% Similarity=0.302 Sum_probs=52.5
Q ss_pred EEEecCCChhHHHHHHHH--HhcC--CeEEEEcccHHHHHHHHHHHHH----cCCCEEEEecCCChhHHHHHHHHHHhcC
Q 035988 110 LVIMAAGGGKSLCYQLPA--VLRE--GIALVVSPLLSLIQDQVMCLAA----LGIPAHMLTSTTSKEDEKFIYKALEKGE 181 (692)
Q Consensus 110 iv~apTGsGKTl~~~lpa--l~~~--~~~lvi~Pt~~L~~q~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (692)
++.|+-|-|||.+.-+.+ +... ..++|.+|+.+=++..++.+.. ++.+.. ..........+..
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~-- 71 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEKGLKALGYKEE-------KKKRIGQIIKLRF-- 71 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC----------------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHhhccccccccc-------ccccccccccccc--
Confidence 478999999998654432 2222 3699999998877766554432 232220 0000000001111
Q ss_pred CCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccc
Q 035988 182 GELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATAT 258 (692)
Q Consensus 182 ~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~ 258 (692)
....|-|..|+.+.... ...+++|||||=.+. +..+.......+.++||.|..
T Consensus 72 ~~~~i~f~~Pd~l~~~~------------~~~DlliVDEAAaIp------------~p~L~~ll~~~~~vv~stTi~ 124 (177)
T PF05127_consen 72 NKQRIEFVAPDELLAEK------------PQADLLIVDEAAAIP------------LPLLKQLLRRFPRVVFSTTIH 124 (177)
T ss_dssp -CCC--B--HHHHCCT----------------SCEEECTGGGS-------------HHHHHHHHCCSSEEEEEEEBS
T ss_pred ccceEEEECCHHHHhCc------------CCCCEEEEechhcCC------------HHHHHHHHhhCCEEEEEeecc
Confidence 15688888888765321 246899999998864 113333344556788888874
No 311
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.57 E-value=1.3 Score=50.83 Aligned_cols=44 Identities=18% Similarity=0.323 Sum_probs=25.5
Q ss_pred cCCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccch
Q 035988 210 AGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQ 259 (692)
Q Consensus 210 ~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~ 259 (692)
.....++||||||.+..- ....|.......|..-++.|..|-..
T Consensus 116 ~~~~KVvIIDEah~Lt~~------A~NALLK~LEEpp~~~~fIL~tte~~ 159 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTA------GFNALLKIVEEPPEHLIFIFATTEPE 159 (584)
T ss_pred cCCceEEEEECCCcCCHH------HHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 357889999999998642 23333344445554333334335443
No 312
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=92.57 E-value=0.38 Score=48.78 Aligned_cols=91 Identities=15% Similarity=0.186 Sum_probs=68.5
Q ss_pred CCceeEeccCCCHHHHHHHHHHHhcCC----CcEEEeccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcC-CCCCCC
Q 035988 339 GISADYYHADMDINAREKVHMRWSKNK----LQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAG-RDGLPS 413 (692)
Q Consensus 339 g~~v~~~h~~~~~~eR~~~~~~f~~g~----~~ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRag-R~G~~g 413 (692)
++.+..++++.+... -.|.++. ..|+|+-+.++||+.++++.+.....-|+..+++.||.=--| |.|-..
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~d 184 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYED 184 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCccccc
Confidence 466666666554432 3344433 679999999999999999999999999999999999977777 888888
Q ss_pred eeEeecCCCCHHHHHHHHhhh
Q 035988 414 ECLLFFRPADVPRQSSMVFYE 434 (692)
Q Consensus 414 ~~i~l~~~~d~~~~~~l~~~~ 434 (692)
.|-+|.++.-......+...+
T Consensus 185 l~Ri~~~~~l~~~f~~i~~~~ 205 (239)
T PF10593_consen 185 LCRIYMPEELYDWFRHIAEAE 205 (239)
T ss_pred ceEEecCHHHHHHHHHHHHHH
Confidence 999988766555555544433
No 313
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.53 E-value=0.24 Score=55.07 Aligned_cols=134 Identities=16% Similarity=0.157 Sum_probs=66.7
Q ss_pred EEecCCChhHHHHHHHHH---hcC-CeEEEEcccHHHHHHHHHHHHH-----c-----------CCCEEEEecCCChhHH
Q 035988 111 VIMAAGGGKSLCYQLPAV---LRE-GIALVVSPLLSLIQDQVMCLAA-----L-----------GIPAHMLTSTTSKEDE 170 (692)
Q Consensus 111 v~apTGsGKTl~~~lpal---~~~-~~~lvi~Pt~~L~~q~~~~l~~-----~-----------gi~~~~~~~~~~~~~~ 170 (692)
..|.||||||++..--++ ..| ..-|+.|......+-....+.. + .+++..++.-..
T Consensus 2 f~matgsgkt~~ma~lil~~y~kgyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fse---- 77 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKGYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSE---- 77 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhchhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCc----
Confidence 468999999987543233 223 3456666655555544333221 0 122222221111
Q ss_pred HHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhh---hcCCce-EEEEeCcccccccCC----Cc----hHHHHHH
Q 035988 171 KFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCH---HAGRLS-LISIDEAHCCSQWGH----DF----RPDYKNL 238 (692)
Q Consensus 171 ~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~---~~~~l~-~iVIDEaH~l~~~g~----~f----r~~~~~l 238 (692)
......|.++|.+.|.. .+...-++.. .+.+.. .++-||||++..... |- +..-..+
T Consensus 78 ---------hnd~iei~fttiq~l~~--d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v 146 (812)
T COG3421 78 ---------HNDAIEIYFTTIQGLFS--DFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVV 146 (812)
T ss_pred ---------cCCceEEEEeehHHHHH--HHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHH
Confidence 12378999999998864 2222212111 223333 356799999853110 10 1111111
Q ss_pred HHHHhhCCCCCEEEEecccch
Q 035988 239 GILKTQFPDVPMMALTATATQ 259 (692)
Q Consensus 239 ~~l~~~~~~~~~i~lSAT~~~ 259 (692)
..-....++--++.+|||.+.
T Consensus 147 ~la~~~nkd~~~lef~at~~k 167 (812)
T COG3421 147 KLALEQNKDNLLLEFSATIPK 167 (812)
T ss_pred HHHHhcCCCceeehhhhcCCc
Confidence 222334466667889999873
No 314
>PHA02533 17 large terminase protein; Provisional
Probab=92.52 E-value=2.7 Score=47.92 Aligned_cols=63 Identities=10% Similarity=0.060 Sum_probs=49.7
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHH-----hcCCeEEEEcccHHHHHHHHHHHHH
Q 035988 91 AYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAV-----LREGIALVVSPLLSLIQDQVMCLAA 153 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal-----~~~~~~lvi~Pt~~L~~q~~~~l~~ 153 (692)
.++|+|...+..+..++-.++..+=..|||.+...-++ ..+..+++++|+..-+...++.++.
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~ 126 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQ 126 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 57899999999877677778999999999976553222 2346899999999998888877764
No 315
>PRK10689 transcription-repair coupling factor; Provisional
Probab=92.51 E-value=1.4 Score=54.67 Aligned_cols=83 Identities=18% Similarity=0.156 Sum_probs=70.5
Q ss_pred HhcCCeEEEEcccHHHHHHHHHHHHHc--CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHH
Q 035988 128 VLREGIALVVSPLLSLIQDQVMCLAAL--GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLE 205 (692)
Q Consensus 128 l~~~~~~lvi~Pt~~L~~q~~~~l~~~--gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~ 205 (692)
+.+++.++|++|+++-++..++.+++. +.++..++|+++..++..+...+..+ ..+|+|+|.= + .
T Consensus 806 l~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~G--k~~VLVaTdI-i----------e 872 (1147)
T PRK10689 806 ILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQ--RFNVLVCTTI-I----------E 872 (1147)
T ss_pred HhcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhc--CCCEEEECch-h----------h
Confidence 345689999999999999999999987 78899999999999999999999988 8999999943 2 2
Q ss_pred hhhhcCCceEEEEeCccc
Q 035988 206 KCHHAGRLSLISIDEAHC 223 (692)
Q Consensus 206 ~~~~~~~l~~iVIDEaH~ 223 (692)
......++++||++.+++
T Consensus 873 rGIDIP~v~~VIi~~ad~ 890 (1147)
T PRK10689 873 TGIDIPTANTIIIERADH 890 (1147)
T ss_pred cccccccCCEEEEecCCC
Confidence 344567899999999987
No 316
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=92.48 E-value=1.1 Score=47.51 Aligned_cols=77 Identities=12% Similarity=0.133 Sum_probs=40.6
Q ss_pred CccEEEeChhh----h--hchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecc
Q 035988 183 ELKMLYVTPEK----I--SKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTAT 256 (692)
Q Consensus 183 ~~~Ili~Tpe~----l--~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT 256 (692)
.+|+.+..|+. + .....+.+.+......+...++|||+||.|..-. -..|-+..+..|..-++.|.++
T Consensus 73 HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~A------aNaLLKtLEEPp~~t~fiL~t~ 146 (319)
T PRK06090 73 HPDLHVIKPEKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESA------SNALLKTLEEPAPNCLFLLVTH 146 (319)
T ss_pred CCCEEEEecCcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHH------HHHHHHHhcCCCCCeEEEEEEC
Confidence 56676666642 1 1111222333333344678999999999986322 2233345555565455555555
Q ss_pred cchhhHHHH
Q 035988 257 ATQKVQNDL 265 (692)
Q Consensus 257 ~~~~~~~~i 265 (692)
-+..+..-|
T Consensus 147 ~~~~lLpTI 155 (319)
T PRK06090 147 NQKRLLPTI 155 (319)
T ss_pred ChhhChHHH
Confidence 554444333
No 317
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.48 E-value=1.4 Score=45.34 Aligned_cols=117 Identities=16% Similarity=0.166 Sum_probs=62.0
Q ss_pred HHHHcCC-----CEEEEecCCChhHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHH
Q 035988 101 NAVLSGR-----DVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYK 175 (692)
Q Consensus 101 ~~il~g~-----dviv~apTGsGKTl~~~lpal~~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~ 175 (692)
|.+..|+ .+++.+|+|+|||..+-..+-. ...+++-+.+-.|+.-|.-+-.
T Consensus 156 PqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATE-AnSTFFSvSSSDLvSKWmGESE----------------------- 211 (439)
T KOG0739|consen 156 PQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATE-ANSTFFSVSSSDLVSKWMGESE----------------------- 211 (439)
T ss_pred hhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhh-cCCceEEeehHHHHHHHhccHH-----------------------
Confidence 4445554 4899999999999643222222 2355655555555554322211
Q ss_pred HHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCch-HHHHHHH-HHHhhCC-----CC
Q 035988 176 ALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFR-PDYKNLG-ILKTQFP-----DV 248 (692)
Q Consensus 176 ~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr-~~~~~l~-~l~~~~~-----~~ 248 (692)
++...+.....-+..++|.|||+|.+...+.+-. ..-+++. .+.-+.. +-
T Consensus 212 -----------------------kLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~ 268 (439)
T KOG0739|consen 212 -----------------------KLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDND 268 (439)
T ss_pred -----------------------HHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCC
Confidence 1222222222335788999999998764333222 2222221 2222222 34
Q ss_pred CEEEEecccchhhHHH
Q 035988 249 PMMALTATATQKVQND 264 (692)
Q Consensus 249 ~~i~lSAT~~~~~~~~ 264 (692)
-++.|.||-.|-+.+.
T Consensus 269 gvLVLgATNiPw~LDs 284 (439)
T KOG0739|consen 269 GVLVLGATNIPWVLDS 284 (439)
T ss_pred ceEEEecCCCchhHHH
Confidence 5788889876655543
No 318
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=92.41 E-value=0.17 Score=58.26 Aligned_cols=58 Identities=17% Similarity=0.241 Sum_probs=48.4
Q ss_pred CCEEEEecCCChhHHHHHHHHHhc-CCeEEEEcccHHHHHHHHHHHHHcC-CCEEEEecC
Q 035988 107 RDVLVIMAAGGGKSLCYQLPAVLR-EGIALVVSPLLSLIQDQVMCLAALG-IPAHMLTST 164 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~lpal~~-~~~~lvi~Pt~~L~~q~~~~l~~~g-i~~~~~~~~ 164 (692)
.++++.||||||||..+.+|.++. ++.++|+=|--++..-....-++.| -++.++...
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnLL~~~gS~VV~DpKgE~~~~Ta~~R~~~Gg~~V~vfdP~ 271 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTALKYGGPLVCLDPSTEVAPMVCEHRRQAGNRKVIVLDPT 271 (623)
T ss_pred ceEEEEeCCCCCccceeehhhhhcCCCCEEEEEChHHHHHHHHHHHHHcCCCcEEEEeCC
Confidence 579999999999999999999876 6788888899999887777667776 677777654
No 319
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.37 E-value=0.12 Score=53.40 Aligned_cols=21 Identities=38% Similarity=0.531 Sum_probs=18.0
Q ss_pred cCCCEEEEecCCChhHHHHHH
Q 035988 105 SGRDVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~~l 125 (692)
+..++++++|||||||+.++-
T Consensus 96 ~KSNILLiGPTGsGKTlLAqT 116 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLAQT 116 (408)
T ss_pred eeccEEEECCCCCcHHHHHHH
Confidence 456899999999999997764
No 320
>PLN03025 replication factor C subunit; Provisional
Probab=92.37 E-value=1.9 Score=45.87 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=25.2
Q ss_pred CceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhh
Q 035988 212 RLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKV 261 (692)
Q Consensus 212 ~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~ 261 (692)
...+++|||+|.+.... -..|......+++.-.+.++++....+
T Consensus 99 ~~kviiiDE~d~lt~~a------q~aL~~~lE~~~~~t~~il~~n~~~~i 142 (319)
T PLN03025 99 RHKIVILDEADSMTSGA------QQALRRTMEIYSNTTRFALACNTSSKI 142 (319)
T ss_pred CeEEEEEechhhcCHHH------HHHHHHHHhcccCCceEEEEeCCcccc
Confidence 57899999999986422 122333444555444455555544433
No 321
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=92.35 E-value=0.3 Score=56.00 Aligned_cols=18 Identities=22% Similarity=0.268 Sum_probs=14.9
Q ss_pred CEEEEecCCChhHHHHHH
Q 035988 108 DVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 108 dviv~apTGsGKTl~~~l 125 (692)
-.|+.||.|+|||.++-+
T Consensus 40 ayLf~Gp~GtGKTt~Ak~ 57 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAKI 57 (559)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378899999999987654
No 322
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=92.34 E-value=0.52 Score=47.76 Aligned_cols=51 Identities=22% Similarity=0.163 Sum_probs=36.0
Q ss_pred CCCEEEEecCCChhHHH-HHH--HHHhcCCeEEEEcccHHHHHHHHHHHHHcCCC
Q 035988 106 GRDVLVIMAAGGGKSLC-YQL--PAVLREGIALVVSPLLSLIQDQVMCLAALGIP 157 (692)
Q Consensus 106 g~dviv~apTGsGKTl~-~~l--pal~~~~~~lvi~Pt~~L~~q~~~~l~~~gi~ 157 (692)
|.-+++.+|+|+|||.. .++ -.+..+.++++++ +-+-..+..+.+..+|..
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs-~ee~~~~i~~~~~~~g~~ 74 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA-LEEHPVQVRRNMAQFGWD 74 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE-eeCCHHHHHHHHHHhCCC
Confidence 56799999999999964 333 2344567788877 455666777777777653
No 323
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.32 E-value=1.6 Score=49.01 Aligned_cols=17 Identities=18% Similarity=0.292 Sum_probs=14.6
Q ss_pred EEEEecCCChhHHHHHH
Q 035988 109 VLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 109 viv~apTGsGKTl~~~l 125 (692)
+|+.||+|+|||..+.+
T Consensus 39 ~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 39 YIFAGPRGTGKTTVARI 55 (472)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 69999999999976654
No 324
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=92.32 E-value=0.15 Score=57.49 Aligned_cols=41 Identities=22% Similarity=0.299 Sum_probs=31.7
Q ss_pred cCCCCCCHHHHHHHHHHH----cCCCEEEEecCCChhHHHHHHHHH
Q 035988 87 FGIPAYRANQQEIINAVL----SGRDVLVIMAAGGGKSLCYQLPAV 128 (692)
Q Consensus 87 fg~~~~r~~Q~~ai~~il----~g~dviv~apTGsGKTl~~~lpal 128 (692)
|+| +|+.+|.+.+..+. .|+-.|...|||+|||++.+-.++
T Consensus 12 fPy-~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaal 56 (821)
T KOG1133|consen 12 FPY-TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAAL 56 (821)
T ss_pred CCC-CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHH
Confidence 344 78899998776654 589899999999999987654443
No 325
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=92.32 E-value=1.1 Score=51.44 Aligned_cols=42 Identities=21% Similarity=0.165 Sum_probs=25.1
Q ss_pred CCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccc
Q 035988 211 GRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATAT 258 (692)
Q Consensus 211 ~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~ 258 (692)
....++||||||.+..- ....|.......|...++.|.+|-.
T Consensus 118 ~~~KVIIIDEad~Lt~~------A~NaLLKtLEEPp~~tvfIL~Tt~~ 159 (605)
T PRK05896 118 FKYKVYIIDEAHMLSTS------AWNALLKTLEEPPKHVVFIFATTEF 159 (605)
T ss_pred CCcEEEEEechHhCCHH------HHHHHHHHHHhCCCcEEEEEECCCh
Confidence 45688999999997531 2233444455555555555555543
No 326
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=92.28 E-value=1.2 Score=49.16 Aligned_cols=16 Identities=19% Similarity=0.266 Sum_probs=13.7
Q ss_pred CEEEEecCCChhHHHH
Q 035988 108 DVLVIMAAGGGKSLCY 123 (692)
Q Consensus 108 dviv~apTGsGKTl~~ 123 (692)
.+++.||+|+|||...
T Consensus 138 ~l~l~G~~G~GKThL~ 153 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLL 153 (405)
T ss_pred eEEEECCCCCcHHHHH
Confidence 4789999999999744
No 327
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=92.26 E-value=0.56 Score=46.87 Aligned_cols=19 Identities=32% Similarity=0.317 Sum_probs=15.9
Q ss_pred CCCEEEEecCCChhHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~ 124 (692)
+..+++.||+|+|||....
T Consensus 38 ~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4679999999999997543
No 328
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=92.26 E-value=0.23 Score=48.07 Aligned_cols=42 Identities=17% Similarity=0.366 Sum_probs=24.6
Q ss_pred cCCCEEEEecCCChhHHHHHH--HHHhcCCeEEEEcccHHHHHH
Q 035988 105 SGRDVLVIMAAGGGKSLCYQL--PAVLREGIALVVSPLLSLIQD 146 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~~l--pal~~~~~~lvi~Pt~~L~~q 146 (692)
.++++++.+|||+|||..+.. -.+...+..+..++..+|+..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~ 89 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDE 89 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecc
Confidence 467899999999999964432 123334444444566666554
No 329
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=92.25 E-value=0.96 Score=43.28 Aligned_cols=52 Identities=15% Similarity=0.227 Sum_probs=31.7
Q ss_pred HhhhhcCCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccch
Q 035988 205 EKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQ 259 (692)
Q Consensus 205 ~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~ 259 (692)
........+++||+||+-....+| +-+.-.-+..+ ...|.-.=+.+|..-.+
T Consensus 90 ~~~l~~~~~DlvVLDEi~~A~~~g--li~~~~v~~lL-~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 90 KEMLADPELDLVLLDELTYALKYG--YLDVEEVVEAL-QERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHhcCCCCEEEehhhHHHHHCC--CcCHHHHHHHH-HhCCCCCEEEEECCCCC
Confidence 333344689999999999888888 44433333334 44454444556665444
No 330
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=92.22 E-value=0.088 Score=65.50 Aligned_cols=95 Identities=19% Similarity=0.285 Sum_probs=79.6
Q ss_pred CceEEEEeccchHHHHHHHHHHC-CCceeEeccCCC-----------HHHHHHHHHHHhcCCCcEEEeccccccccCCCC
Q 035988 316 ESGIVYCFSRKECEQVAQELRQR-GISADYYHADMD-----------INAREKVHMRWSKNKLQVIVGTVAFGMGINKPD 383 (692)
Q Consensus 316 ~~~IIf~~s~~~~e~l~~~L~~~-g~~v~~~h~~~~-----------~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~ 383 (692)
=.+|+||..+..+..+.+.++.. ...+..+.|.+. ...+.+++..|....+.+|++|.++..|+|.+.
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~ 372 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPK 372 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhh
Confidence 46899999999999999988765 233444555442 224678899999999999999999999999999
Q ss_pred ccEEEEeCCCCCHHHHHHHHhhcCCCC
Q 035988 384 VRFVIHHSLSKSVETYYQESGRAGRDG 410 (692)
Q Consensus 384 v~~VI~~~~P~s~~~y~Qr~GRagR~G 410 (692)
++.|++++.|.....|+|..||+-+.+
T Consensus 373 ~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 373 CNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhhheeccCcchHHHHHHhhcccccch
Confidence 999999999999999999999997653
No 331
>PRK08939 primosomal protein DnaI; Reviewed
Probab=92.20 E-value=1.2 Score=47.00 Aligned_cols=17 Identities=24% Similarity=0.200 Sum_probs=14.6
Q ss_pred CCCEEEEecCCChhHHH
Q 035988 106 GRDVLVIMAAGGGKSLC 122 (692)
Q Consensus 106 g~dviv~apTGsGKTl~ 122 (692)
++.+++.||+|+|||..
T Consensus 156 ~~gl~L~G~~G~GKThL 172 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYL 172 (306)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 45799999999999963
No 332
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.17 E-value=1.5 Score=48.94 Aligned_cols=50 Identities=30% Similarity=0.239 Sum_probs=32.0
Q ss_pred CCCEEEEecCCChhHHHH-HHHHH--hcCCeEEEEcccHHHHHHHHHHHHHcCC
Q 035988 106 GRDVLVIMAAGGGKSLCY-QLPAV--LREGIALVVSPLLSLIQDQVMCLAALGI 156 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~-~lpal--~~~~~~lvi~Pt~~L~~q~~~~l~~~gi 156 (692)
|.-+++.+++|+|||... ++..- ..+.++++++-- +-..|...+..++|+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~E-es~~qi~~ra~rlg~ 132 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGE-ESASQIKLRAERLGL 132 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc-ccHHHHHHHHHHcCC
Confidence 456899999999999643 33222 235677887743 344566666666654
No 333
>PRK05748 replicative DNA helicase; Provisional
Probab=92.11 E-value=1.4 Score=49.36 Aligned_cols=117 Identities=19% Similarity=0.138 Sum_probs=56.0
Q ss_pred CCCEEEEecCCChhHHHHH-HH---HHhcCCeEEEEcccHHHHHHHHHHHH-Hc-CCCEE-EEecCCChhHHHHHHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQ-LP---AVLREGIALVVSPLLSLIQDQVMCLA-AL-GIPAH-MLTSTTSKEDEKFIYKALE 178 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~-lp---al~~~~~~lvi~Pt~~L~~q~~~~l~-~~-gi~~~-~~~~~~~~~~~~~~~~~l~ 178 (692)
|.-+++.|+||.|||.-.+ +. +...+..+++++. -.-..|...++- .. ++... ...+.....+.........
T Consensus 203 G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSl-Ems~~~l~~R~l~~~~~v~~~~i~~~~l~~~e~~~~~~a~~ 281 (448)
T PRK05748 203 NDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSL-EMGAESLVMRMLCAEGNIDAQRLRTGQLTDDDWPKLTIAMG 281 (448)
T ss_pred CceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeC-CCCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHHHHH
Confidence 3457899999999996443 21 1123455666542 233344444443 22 33332 2233444444333323222
Q ss_pred hcCCCccEEEe-ChhhhhchHHHHHHHHhhhhcC-CceEEEEeCcccccc
Q 035988 179 KGEGELKMLYV-TPEKISKSKRFMSKLEKCHHAG-RLSLISIDEAHCCSQ 226 (692)
Q Consensus 179 ~~~~~~~Ili~-Tpe~l~~~~~~~~~l~~~~~~~-~l~~iVIDEaH~l~~ 226 (692)
... ...+.|. +|. + +...+........... .+++||||=.|.+..
T Consensus 282 ~l~-~~~~~i~d~~~-~-ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~~ 328 (448)
T PRK05748 282 SLS-DAPIYIDDTPG-I-KVTEIRARCRRLAQEHGGLGLILIDYLQLIQG 328 (448)
T ss_pred HHh-cCCEEEECCCC-C-CHHHHHHHHHHHHHhcCCCCEEEEccchhcCC
Confidence 211 2344443 333 1 1112223322222222 689999999998853
No 334
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=92.10 E-value=0.86 Score=54.48 Aligned_cols=43 Identities=23% Similarity=0.360 Sum_probs=25.5
Q ss_pred CCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccch
Q 035988 211 GRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQ 259 (692)
Q Consensus 211 ~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~ 259 (692)
.+..++||||+|.|..-+ ...|..+.+..|..-+++|..|-..
T Consensus 119 ~~~KV~IIDEad~lt~~a------~NaLLK~LEEpP~~~~fIl~tt~~~ 161 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG------FNALLKIVEEPPEHLKFIFATTEPD 161 (824)
T ss_pred CCceEEEEechhhcCHHH------HHHHHHHHhCCCCCeEEEEEeCChh
Confidence 578899999999987533 2334445555554334444434433
No 335
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=92.01 E-value=0.73 Score=55.84 Aligned_cols=78 Identities=10% Similarity=0.200 Sum_probs=66.8
Q ss_pred CCCceEEEEeccchHHHHHHHHHHC----CCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccc-cccccCCCCccEEE
Q 035988 314 NSESGIVYCFSRKECEQVAQELRQR----GISADYYHADMDINAREKVHMRWSKNKLQVIVGTVA-FGMGINKPDVRFVI 388 (692)
Q Consensus 314 ~~~~~IIf~~s~~~~e~l~~~L~~~----g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~-~~~GIDip~v~~VI 388 (692)
.+.+++|.++|+.-|.+.++.+++. ++.+..++|+.+..++..+.+.+.+|+.+|+|+|.. +...+.+.++.+||
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 5678999999999999999888763 677889999999999999999999999999999984 45567888888877
Q ss_pred EeC
Q 035988 389 HHS 391 (692)
Q Consensus 389 ~~~ 391 (692)
.-.
T Consensus 579 IDE 581 (926)
T TIGR00580 579 IDE 581 (926)
T ss_pred eec
Confidence 433
No 336
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=91.97 E-value=0.17 Score=58.70 Aligned_cols=56 Identities=21% Similarity=0.215 Sum_probs=46.4
Q ss_pred CCEEEEecCCChhHHHHHHHHHhc-CCeEEEEcccHHHHHHHHHHHHHcCCCEEEEec
Q 035988 107 RDVLVIMAAGGGKSLCYQLPAVLR-EGIALVVSPLLSLIQDQVMCLAALGIPAHMLTS 163 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~lpal~~-~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~ 163 (692)
.++++.||||||||..+.+|.++. ++.+||.=|--++........++.| ++..++-
T Consensus 145 ~hvLviApTrSGKgvg~VIPnLL~~~~S~VV~D~KGEl~~~Ta~~R~~~G-~V~~FdP 201 (663)
T PRK13876 145 EHVLCFAPTRSGKGVGLVVPTLLTWPGSAIVHDIKGENWQLTAGFRARFG-RVLLFDP 201 (663)
T ss_pred ceEEEEecCCCCcceeEehhhHHhCCCCEEEEeCcchHHHHHHHHHHhCC-eEEEEeC
Confidence 679999999999999999999876 6788888899999888777777777 5555543
No 337
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=91.92 E-value=2.4 Score=46.38 Aligned_cols=75 Identities=17% Similarity=0.219 Sum_probs=39.2
Q ss_pred CccEEEeChhhhhc----hHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccc
Q 035988 183 ELKMLYVTPEKISK----SKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATAT 258 (692)
Q Consensus 183 ~~~Ili~Tpe~l~~----~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~ 258 (692)
.+++.+.+|+.... ...+.+.........+..+++|||+|.|..-. ...|.......|+..++++++|-+
T Consensus 84 hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~a------anaLLk~LEep~~~~~fIL~a~~~ 157 (394)
T PRK07940 84 HPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERA------ANALLKAVEEPPPRTVWLLCAPSP 157 (394)
T ss_pred CCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHH------HHHHHHHhhcCCCCCeEEEEECCh
Confidence 56777777653211 11222222222234567899999999985322 122223444555555566666655
Q ss_pred hhhHH
Q 035988 259 QKVQN 263 (692)
Q Consensus 259 ~~~~~ 263 (692)
..+..
T Consensus 158 ~~llp 162 (394)
T PRK07940 158 EDVLP 162 (394)
T ss_pred HHChH
Confidence 44443
No 338
>PRK04328 hypothetical protein; Provisional
Probab=91.87 E-value=0.71 Score=47.22 Aligned_cols=51 Identities=20% Similarity=0.149 Sum_probs=34.4
Q ss_pred cCCCEEEEecCCChhHH-HHHH--HHHhcCCeEEEEcccHHHHHHHHHHHHHcCC
Q 035988 105 SGRDVLVIMAAGGGKSL-CYQL--PAVLREGIALVVSPLLSLIQDQVMCLAALGI 156 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl-~~~l--pal~~~~~~lvi~Pt~~L~~q~~~~l~~~gi 156 (692)
.|.-+++.+|+|+|||. +.++ -.+..+..+++++ +-+-..+..+.+..+|.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis-~ee~~~~i~~~~~~~g~ 75 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA-LEEHPVQVRRNMRQFGW 75 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE-eeCCHHHHHHHHHHcCC
Confidence 35678999999999985 4443 2244566777776 44555566677777765
No 339
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=91.86 E-value=2.3 Score=44.68 Aligned_cols=52 Identities=19% Similarity=0.284 Sum_probs=31.9
Q ss_pred EEEEecCCChhHHHHH-HH-HHhc-CCeEEEEc--ccHHHHHHHHHHH-HHcCCCEEE
Q 035988 109 VLVIMAAGGGKSLCYQ-LP-AVLR-EGIALVVS--PLLSLIQDQVMCL-AALGIPAHM 160 (692)
Q Consensus 109 viv~apTGsGKTl~~~-lp-al~~-~~~~lvi~--Pt~~L~~q~~~~l-~~~gi~~~~ 160 (692)
+++++..|+|||.+.- |. .+.. +.++++.+ -.|+-+.+|.+.+ ++.|+++..
T Consensus 142 il~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~ 199 (340)
T COG0552 142 ILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVIS 199 (340)
T ss_pred EEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEc
Confidence 6899999999997543 21 1223 34444433 2577766666655 456776654
No 340
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=91.80 E-value=1.3 Score=46.76 Aligned_cols=13 Identities=31% Similarity=0.140 Sum_probs=11.5
Q ss_pred CceEEEEeCcccc
Q 035988 212 RLSLISIDEAHCC 224 (692)
Q Consensus 212 ~l~~iVIDEaH~l 224 (692)
..+++||||+|.+
T Consensus 100 ~~~vliiDe~d~l 112 (316)
T PHA02544 100 GGKVIIIDEFDRL 112 (316)
T ss_pred CCeEEEEECcccc
Confidence 5689999999987
No 341
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=91.74 E-value=1.6 Score=48.66 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=14.7
Q ss_pred CCEEEEecCCChhHHHHH
Q 035988 107 RDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~ 124 (692)
..+++.||+|+|||....
T Consensus 131 n~l~lyG~~G~GKTHLl~ 148 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQ 148 (440)
T ss_pred CeEEEEcCCCCcHHHHHH
Confidence 358999999999997543
No 342
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=91.73 E-value=0.28 Score=57.74 Aligned_cols=62 Identities=16% Similarity=0.153 Sum_probs=48.0
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHH--HHHHh-c----CCeEEEEcccHHHHHHHHHHHHHc
Q 035988 91 AYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQ--LPAVL-R----EGIALVVSPLLSLIQDQVMCLAAL 154 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~--lpal~-~----~~~~lvi~Pt~~L~~q~~~~l~~~ 154 (692)
.++|-|.+|+.+ ....++|.|+.|||||.+.. +.-+. . +..+|+++.|+..+.+..+++...
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~ 70 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQT 70 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHH
Confidence 478999999876 45789999999999996543 22222 2 357999999999999998888764
No 343
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.70 E-value=1.7 Score=50.30 Aligned_cols=17 Identities=24% Similarity=0.288 Sum_probs=14.7
Q ss_pred EEEEecCCChhHHHHHH
Q 035988 109 VLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 109 viv~apTGsGKTl~~~l 125 (692)
.|+.||.|+|||.+..+
T Consensus 41 ~Lf~Gp~GvGKTtlAr~ 57 (618)
T PRK14951 41 YLFTGTRGVGKTTVSRI 57 (618)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 59999999999987654
No 344
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=91.64 E-value=4.3 Score=38.36 Aligned_cols=56 Identities=16% Similarity=0.281 Sum_probs=32.6
Q ss_pred HhhhhcCCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhH
Q 035988 205 EKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQ 262 (692)
Q Consensus 205 ~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~ 262 (692)
........++++|+||+=....+| +-+.-.-+..+....++.-+|+.+-.+++.+.
T Consensus 88 ~~~~~~~~~dLlVLDEi~~a~~~g--li~~~~v~~ll~~rp~~~evIlTGr~~p~~l~ 143 (159)
T cd00561 88 KEAIASGEYDLVILDEINYALGYG--LLDVEEVVDLLKAKPEDLELVLTGRNAPKELI 143 (159)
T ss_pred HHHHhcCCCCEEEEechHhHhhCC--CCCHHHHHHHHHcCCCCCEEEEECCCCCHHHH
Confidence 333345689999999999888888 43332223344444444445554445555443
No 345
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=91.62 E-value=1.9 Score=47.80 Aligned_cols=147 Identities=19% Similarity=0.174 Sum_probs=68.0
Q ss_pred CCCEEEEecCCChhHHHHHHHH----HhcCCeEEEEcccHHHHHHHHHHHHH--cCCCEEEE-ecCCChhHHHHHHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQLPA----VLREGIALVVSPLLSLIQDQVMCLAA--LGIPAHML-TSTTSKEDEKFIYKALE 178 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~lpa----l~~~~~~lvi~Pt~~L~~q~~~~l~~--~gi~~~~~-~~~~~~~~~~~~~~~l~ 178 (692)
|.=+++.|+||+|||...+--+ +..+..+++++. -.=..|...++-. .|++...+ .+..+..+...+.....
T Consensus 194 g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSl-Em~~~~l~~Rl~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~ 272 (421)
T TIGR03600 194 GDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSL-EMSAEQLGERLLASKSGINTGNIRTGRFNDSDFNRLLNAVD 272 (421)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC-CCCHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHH
Confidence 4557899999999996544222 234556777762 2223344444332 34443322 33344333333222222
Q ss_pred hcCCCccEEEeChhhhhchHHHHHHHHhhhhc-CCceEEEEeCcccccc-cCCCchHHH----HHHHHHHhhCCCCCEEE
Q 035988 179 KGEGELKMLYVTPEKISKSKRFMSKLEKCHHA-GRLSLISIDEAHCCSQ-WGHDFRPDY----KNLGILKTQFPDVPMMA 252 (692)
Q Consensus 179 ~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~-~~l~~iVIDEaH~l~~-~g~~fr~~~----~~l~~l~~~~~~~~~i~ 252 (692)
.-. ...+.|.....+. ...+.......... ..+++||||=.|.+.. .+.+-...+ +.|..+... -++|+++
T Consensus 273 ~l~-~~~l~i~d~~~~t-~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~~~~~~~~~~~~~i~~~Lk~lAke-~~i~Vi~ 349 (421)
T TIGR03600 273 RLS-EKDLYIDDTGGLT-VAQIRSIARRIKRKKGGLDLIVVDYIQLMAPTRGRDRNEELGGISRGLKALAKE-LDVPVVL 349 (421)
T ss_pred HHh-cCCEEEECCCCCC-HHHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCHHHHHHHHHHHHHHHHHH-hCCcEEE
Confidence 111 2344554332221 11222222222111 2689999999998863 121111111 222222222 2678877
Q ss_pred Eecc
Q 035988 253 LTAT 256 (692)
Q Consensus 253 lSAT 256 (692)
+|-.
T Consensus 350 lsQl 353 (421)
T TIGR03600 350 LAQL 353 (421)
T ss_pred eccc
Confidence 7753
No 346
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=91.58 E-value=0.97 Score=53.31 Aligned_cols=18 Identities=17% Similarity=0.320 Sum_probs=15.4
Q ss_pred CEEEEecCCChhHHHHHH
Q 035988 108 DVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 108 dviv~apTGsGKTl~~~l 125 (692)
++++.+|+|+|||.....
T Consensus 54 slLL~GPpGtGKTTLA~a 71 (725)
T PRK13341 54 SLILYGPPGVGKTTLARI 71 (725)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 689999999999986644
No 347
>PRK09354 recA recombinase A; Provisional
Probab=91.51 E-value=1.1 Score=47.88 Aligned_cols=89 Identities=19% Similarity=0.207 Sum_probs=53.5
Q ss_pred CCCEEEEecCCChhHHHHHH---HHHhcCCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCC
Q 035988 106 GRDVLVIMAAGGGKSLCYQL---PAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEG 182 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~l---pal~~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (692)
|+-+.+.+|+|+|||...+- -+...++.+++|..--++-. ..++.+|+..
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~---~~a~~lGvdl------------------------ 112 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDP---VYAKKLGVDI------------------------ 112 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHH---HHHHHcCCCH------------------------
Confidence 56788999999999965432 22344678888776665554 3455555431
Q ss_pred CccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCccccc
Q 035988 183 ELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCS 225 (692)
Q Consensus 183 ~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~ 225 (692)
-++++..|.... ..+..+........+++||||=+-.+.
T Consensus 113 -d~lli~qp~~~E---q~l~i~~~li~s~~~~lIVIDSvaaL~ 151 (349)
T PRK09354 113 -DNLLVSQPDTGE---QALEIADTLVRSGAVDLIVVDSVAALV 151 (349)
T ss_pred -HHeEEecCCCHH---HHHHHHHHHhhcCCCCEEEEeChhhhc
Confidence 135556565432 222333333333578999999887654
No 348
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=91.45 E-value=1.1 Score=47.94 Aligned_cols=77 Identities=16% Similarity=0.176 Sum_probs=43.5
Q ss_pred CccEEEeChhh------hhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecc
Q 035988 183 ELKMLYVTPEK------ISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTAT 256 (692)
Q Consensus 183 ~~~Ili~Tpe~------l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT 256 (692)
.+|+.+.+|+. +.....+.+.+......+....+|||+||.|..-. -..|-+..+..|..-+++|.++
T Consensus 73 HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~A------aNaLLKtLEEPp~~t~fiL~t~ 146 (334)
T PRK07993 73 HPDYYTLTPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAA------ANALLKTLEEPPENTWFFLACR 146 (334)
T ss_pred CCCEEEEecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHH------HHHHHHHhcCCCCCeEEEEEEC
Confidence 57777777763 11122333333333345678999999999986422 2333345556665555566665
Q ss_pred cchhhHHHH
Q 035988 257 ATQKVQNDL 265 (692)
Q Consensus 257 ~~~~~~~~i 265 (692)
-+..+..-|
T Consensus 147 ~~~~lLpTI 155 (334)
T PRK07993 147 EPARLLATL 155 (334)
T ss_pred ChhhChHHH
Confidence 554444333
No 349
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=91.43 E-value=1.8 Score=46.03 Aligned_cols=33 Identities=21% Similarity=0.112 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHc--CC---CEEEEecCCChhHHHHH
Q 035988 92 YRANQQEIINAVLS--GR---DVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 92 ~r~~Q~~ai~~il~--g~---dviv~apTGsGKTl~~~ 124 (692)
++|+|...+..+.. ++ -.++.+|.|.|||..+.
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~ 39 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFAR 39 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHH
Confidence 35778888777764 22 48899999999997654
No 350
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=91.41 E-value=1.8 Score=51.36 Aligned_cols=19 Identities=21% Similarity=0.316 Sum_probs=16.2
Q ss_pred CCCEEEEecCCChhHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~ 124 (692)
..++++++|+|+|||....
T Consensus 207 ~~n~LLvGppGvGKT~lae 225 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAE 225 (758)
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 4589999999999998654
No 351
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=91.29 E-value=1.5 Score=45.10 Aligned_cols=52 Identities=19% Similarity=0.119 Sum_probs=31.8
Q ss_pred cCCCEEEEecCCChhHHH-HHHHH--HhcCCeEEEEcc---cHHHHHHHHHHHHHcCC
Q 035988 105 SGRDVLVIMAAGGGKSLC-YQLPA--VLREGIALVVSP---LLSLIQDQVMCLAALGI 156 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~-~~lpa--l~~~~~~lvi~P---t~~L~~q~~~~l~~~gi 156 (692)
.|.-+++.+|+|+|||.. .++.. +..+.++++++- ...+.++.......+|.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~~~~~~~l~~~a~~~g~ 92 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPANFVYTSLKERAKAMGV 92 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCchHHHHHHHHHHHHcCC
Confidence 356689999999999953 33322 344668888773 23344444444555554
No 352
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=91.27 E-value=0.45 Score=48.76 Aligned_cols=49 Identities=16% Similarity=0.280 Sum_probs=34.4
Q ss_pred cCCCEEEEecCCChhHHHHH--HHHHhcCCeEEEEcccHHHHHHHHHHHHH
Q 035988 105 SGRDVLVIMAAGGGKSLCYQ--LPAVLREGIALVVSPLLSLIQDQVMCLAA 153 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~~--lpal~~~~~~lvi~Pt~~L~~q~~~~l~~ 153 (692)
++.++++.||+|+|||..+. .-.+...+..+.++++-+|+.+....+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~ 154 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDE 154 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhc
Confidence 57899999999999996433 22234556777778888887775554443
No 353
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=91.21 E-value=0.47 Score=62.03 Aligned_cols=63 Identities=22% Similarity=0.275 Sum_probs=44.6
Q ss_pred CCCHHHHHHHHHHHcCC--CEEEEecCCChhHHHHH------HHHHh-cCCeEEEEcccHHHHHHHHHHHHHcCCC
Q 035988 91 AYRANQQEIINAVLSGR--DVLVIMAAGGGKSLCYQ------LPAVL-REGIALVVSPLLSLIQDQVMCLAALGIP 157 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~g~--dviv~apTGsGKTl~~~------lpal~-~~~~~lvi~Pt~~L~~q~~~~l~~~gi~ 157 (692)
.+++.|++|+..++.+. -+++.++.|+|||.... .-++. .+..++.++||-.-+.. |+..|+.
T Consensus 1019 ~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa~~----L~~~g~~ 1090 (1960)
T TIGR02760 1019 RLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAVGE----LKSAGVQ 1090 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHHHH----HHhcCCc
Confidence 68999999999998764 47889999999997651 11122 24578888999665544 3444554
No 354
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=91.20 E-value=1.1 Score=47.32 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=16.6
Q ss_pred CEEEEecCCChhHHHHHHHHH
Q 035988 108 DVLVIMAAGGGKSLCYQLPAV 128 (692)
Q Consensus 108 dviv~apTGsGKTl~~~lpal 128 (692)
..|+++|.|+|||..+-+-+.
T Consensus 164 SmIlWGppG~GKTtlArlia~ 184 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIAS 184 (554)
T ss_pred ceEEecCCCCchHHHHHHHHh
Confidence 589999999999986655333
No 355
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=91.20 E-value=2 Score=50.26 Aligned_cols=44 Identities=20% Similarity=0.243 Sum_probs=25.3
Q ss_pred hcCCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccc
Q 035988 209 HAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATAT 258 (692)
Q Consensus 209 ~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~ 258 (692)
......++||||||.+..- ....|.......|..-++.|.+|-+
T Consensus 115 ~~g~~KV~IIDEa~~LT~~------A~NALLKtLEEPP~~tifILaTte~ 158 (725)
T PRK07133 115 TQSKYKIYIIDEVHMLSKS------AFNALLKTLEEPPKHVIFILATTEV 158 (725)
T ss_pred hcCCCEEEEEEChhhCCHH------HHHHHHHHhhcCCCceEEEEEcCCh
Confidence 3467889999999997631 2333333444555434444444533
No 356
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.15 E-value=15 Score=41.27 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=15.6
Q ss_pred CCCEEEEecCCChhHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~ 124 (692)
|+-+.+++|||+|||.+..
T Consensus 256 g~Vi~LvGpnGvGKTTTia 274 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTA 274 (484)
T ss_pred CcEEEEECCCCccHHHHHH
Confidence 4568899999999997654
No 357
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=91.08 E-value=3.5 Score=43.79 Aligned_cols=53 Identities=19% Similarity=0.204 Sum_probs=28.7
Q ss_pred CCCEEEEecCCChhHHHHH-HHHHh--cCCeEEEEc-cc-HHHHHHHHH-HHHHcCCCE
Q 035988 106 GRDVLVIMAAGGGKSLCYQ-LPAVL--REGIALVVS-PL-LSLIQDQVM-CLAALGIPA 158 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~-lpal~--~~~~~lvi~-Pt-~~L~~q~~~-~l~~~gi~~ 158 (692)
++-+.+++|+|+|||.+.. +.... .+++++++. .+ +.-+.+|.. .....++..
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~ 172 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPV 172 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceE
Confidence 4457899999999996543 32222 244555543 33 444433333 334445443
No 358
>PHA02542 41 41 helicase; Provisional
Probab=91.07 E-value=1.2 Score=49.90 Aligned_cols=31 Identities=23% Similarity=0.101 Sum_probs=20.2
Q ss_pred CEEEEecCCChhHHHHHHHH---HhcCCeEEEEc
Q 035988 108 DVLVIMAAGGGKSLCYQLPA---VLREGIALVVS 138 (692)
Q Consensus 108 dviv~apTGsGKTl~~~lpa---l~~~~~~lvi~ 138 (692)
=+++.|+||.|||...+--+ ...+..+++++
T Consensus 192 LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fS 225 (473)
T PHA02542 192 LNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYIS 225 (473)
T ss_pred EEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEe
Confidence 37889999999997654222 23345666664
No 359
>PRK05636 replicative DNA helicase; Provisional
Probab=91.05 E-value=2.2 Score=48.35 Aligned_cols=115 Identities=16% Similarity=0.114 Sum_probs=54.2
Q ss_pred CEEEEecCCChhHHHHH-HH---HHhcCCeEEEEcccHHHHHHHHHHHHHc--CCCEEE-EecCCChhHHHHHHHHHHhc
Q 035988 108 DVLVIMAAGGGKSLCYQ-LP---AVLREGIALVVSPLLSLIQDQVMCLAAL--GIPAHM-LTSTTSKEDEKFIYKALEKG 180 (692)
Q Consensus 108 dviv~apTGsGKTl~~~-lp---al~~~~~~lvi~Pt~~L~~q~~~~l~~~--gi~~~~-~~~~~~~~~~~~~~~~l~~~ 180 (692)
=+++.|.||.|||...+ +. ++..+..+++++. -.=..|...++-.. +++... ..+..+..+...+...+...
T Consensus 267 Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSl-EMs~~ql~~R~ls~~s~v~~~~i~~g~l~~~e~~~~~~a~~~l 345 (505)
T PRK05636 267 MIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSL-EMSKSEIVMRLLSAEAEVRLSDMRGGKMDEDAWEKLVQRLGKI 345 (505)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEe-eCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 36889999999996443 22 1223455666632 11123333333221 333222 23444555544444333222
Q ss_pred CCCccEEEe-ChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccc
Q 035988 181 EGELKMLYV-TPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQ 226 (692)
Q Consensus 181 ~~~~~Ili~-Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~ 226 (692)
. ...+.|- +|.. . ...+............+++||||=.|.|..
T Consensus 346 ~-~~~l~I~d~~~~-t-i~~I~~~~r~~~~~~~~~lvvIDYLql~~~ 389 (505)
T PRK05636 346 A-QAPIFIDDSANL-T-MMEIRSKARRLKQKHDLKLIVVDYLQLMSS 389 (505)
T ss_pred h-cCCEEEECCCCC-C-HHHHHHHHHHHHHhcCCCEEEEcchHhcCC
Confidence 1 2344443 3331 1 112222222222224689999999999863
No 360
>CHL00181 cbbX CbbX; Provisional
Probab=91.04 E-value=3.4 Score=43.16 Aligned_cols=20 Identities=20% Similarity=0.190 Sum_probs=16.6
Q ss_pred CCCEEEEecCCChhHHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~l 125 (692)
+.++++.+|+|+|||.++..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~ 78 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALK 78 (287)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 45689999999999987654
No 361
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=90.92 E-value=3.4 Score=45.78 Aligned_cols=49 Identities=20% Similarity=0.220 Sum_probs=29.0
Q ss_pred ceEEEEeCcccccccCCCchHHHHHHHHHHhh-CCCCCEEEEecccchhhHHHH
Q 035988 213 LSLISIDEAHCCSQWGHDFRPDYKNLGILKTQ-FPDVPMMALTATATQKVQNDL 265 (692)
Q Consensus 213 l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~-~~~~~~i~lSAT~~~~~~~~i 265 (692)
.++||||.+-+... -...+.++..+... .|+..++.++||......+.+
T Consensus 176 ~DvVIIDTAGr~~~----d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a 225 (437)
T PRK00771 176 ADVIIVDTAGRHAL----EEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQA 225 (437)
T ss_pred CCEEEEECCCcccc----hHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHH
Confidence 48899999965421 12333444444443 366667888888865544443
No 362
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=90.89 E-value=1.6 Score=50.74 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=15.3
Q ss_pred CEEEEecCCChhHHHHHH
Q 035988 108 DVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 108 dviv~apTGsGKTl~~~l 125 (692)
.+|+.+|.|+|||.+..+
T Consensus 40 a~Lf~GP~GvGKTTlAri 57 (709)
T PRK08691 40 AYLLTGTRGVGKTTIARI 57 (709)
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 479999999999987654
No 363
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=90.89 E-value=0.99 Score=50.91 Aligned_cols=61 Identities=15% Similarity=0.102 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHc-----C----CCEEEEecCCChhHHHHHHHHH---h----cCCeEEEEcccHHHHHHHHHHHHHc
Q 035988 94 ANQQEIINAVLS-----G----RDVLVIMAAGGGKSLCYQLPAV---L----REGIALVVSPLLSLIQDQVMCLAAL 154 (692)
Q Consensus 94 ~~Q~~ai~~il~-----g----~dviv~apTGsGKTl~~~lpal---~----~~~~~lvi~Pt~~L~~q~~~~l~~~ 154 (692)
|+|.-++..++. | +.+++..|=|.|||......++ . .+..++++++++.-+...++.++.+
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~ 77 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKM 77 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHH
Confidence 567777766662 2 3589999999999965432222 1 1357899999999999999888775
No 364
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=90.88 E-value=0.76 Score=46.99 Aligned_cols=19 Identities=26% Similarity=0.350 Sum_probs=15.9
Q ss_pred CCEEEEecCCChhHHHHHH
Q 035988 107 RDVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~l 125 (692)
.++++.+|+|.|||..+.+
T Consensus 53 DHvLl~GPPGlGKTTLA~I 71 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHI 71 (332)
T ss_pred CeEEeeCCCCCcHHHHHHH
Confidence 3599999999999986655
No 365
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.83 E-value=1 Score=48.20 Aligned_cols=17 Identities=29% Similarity=0.532 Sum_probs=15.4
Q ss_pred CCEEEEecCCChhHHHH
Q 035988 107 RDVLVIMAAGGGKSLCY 123 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~ 123 (692)
++++..+|+|+|||+.+
T Consensus 385 RNilfyGPPGTGKTm~A 401 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFA 401 (630)
T ss_pred hheeeeCCCCCCchHHH
Confidence 68999999999999965
No 366
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=90.82 E-value=3.8 Score=39.01 Aligned_cols=51 Identities=18% Similarity=0.171 Sum_probs=26.8
Q ss_pred CCceEEEEeCcccccccCCCchHHHHHHHHHHhh-CCCCCEEEEecccchhhHHHH
Q 035988 211 GRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQ-FPDVPMMALTATATQKVQNDL 265 (692)
Q Consensus 211 ~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~-~~~~~~i~lSAT~~~~~~~~i 265 (692)
...+++|||....... -...+..+..+... .++..++.+.|+......+..
T Consensus 81 ~~~d~viiDt~g~~~~----~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~ 132 (173)
T cd03115 81 ENFDVVIVDTAGRLQI----DENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQA 132 (173)
T ss_pred CCCCEEEEECcccchh----hHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHH
Confidence 3677888888876421 11223333334332 355556677776544444433
No 367
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=90.81 E-value=1.3 Score=43.70 Aligned_cols=35 Identities=17% Similarity=0.159 Sum_probs=22.3
Q ss_pred CCCEEEEecCCChhHHHHHHHHH---hcCCeEEEEccc
Q 035988 106 GRDVLVIMAAGGGKSLCYQLPAV---LREGIALVVSPL 140 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~lpal---~~~~~~lvi~Pt 140 (692)
|+-+.+.+|+|+|||...+-.+. ..+..++++.-.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e 49 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE 49 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 45689999999999965432221 234456665543
No 368
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=90.80 E-value=0.78 Score=47.12 Aligned_cols=145 Identities=20% Similarity=0.222 Sum_probs=70.3
Q ss_pred CCEEEEecCCChhHHHHHHH---HHhc-CCeEEEEccc---HHHHHHHHHHHHHcCCCEEEEe-cCCChhHHHHHHHHHH
Q 035988 107 RDVLVIMAAGGGKSLCYQLP---AVLR-EGIALVVSPL---LSLIQDQVMCLAALGIPAHMLT-STTSKEDEKFIYKALE 178 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~lp---al~~-~~~~lvi~Pt---~~L~~q~~~~l~~~gi~~~~~~-~~~~~~~~~~~~~~l~ 178 (692)
.=+++.|+||.|||...+-- +... +..+++++.= ..++........ +++...+. +.....+.........
T Consensus 20 ~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~s--~v~~~~i~~g~l~~~e~~~~~~~~~ 97 (259)
T PF03796_consen 20 ELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARLS--GVPYNKIRSGDLSDEEFERLQAAAE 97 (259)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHHH--TSTHHHHHCCGCHHHHHHHHHHHHH
T ss_pred cEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhh--cchhhhhhccccCHHHHHHHHHHHH
Confidence 44789999999999754421 2233 4678877752 333333333322 33332222 2233333333322211
Q ss_pred hcCCCccEE-EeChhhhhchHHHHHHHHhhhhc-CCceEEEEeCcccccccCC--CchHH----HHHHHHHHhhCCCCCE
Q 035988 179 KGEGELKML-YVTPEKISKSKRFMSKLEKCHHA-GRLSLISIDEAHCCSQWGH--DFRPD----YKNLGILKTQFPDVPM 250 (692)
Q Consensus 179 ~~~~~~~Il-i~Tpe~l~~~~~~~~~l~~~~~~-~~l~~iVIDEaH~l~~~g~--~fr~~----~~~l~~l~~~~~~~~~ 250 (692)
.-. ...+. ..+|.. +...+.+.+...... ..+++||||=.|.+..... +-+.. ...|..+...+ ++|+
T Consensus 98 ~l~-~~~l~i~~~~~~--~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~~-~i~v 173 (259)
T PF03796_consen 98 KLS-DLPLYIEDTPSL--TIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKEL-NIPV 173 (259)
T ss_dssp HHH-TSEEEEEESSS---BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHHH-TSEE
T ss_pred HHh-hCcEEEECCCCC--CHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHc-CCeE
Confidence 111 22333 344441 222333333332222 6889999999999876421 11222 22333333333 7788
Q ss_pred EEEeccc
Q 035988 251 MALTATA 257 (692)
Q Consensus 251 i~lSAT~ 257 (692)
+++|-.-
T Consensus 174 i~~sQln 180 (259)
T PF03796_consen 174 IALSQLN 180 (259)
T ss_dssp EEEEEBS
T ss_pred EEccccC
Confidence 8877643
No 369
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=90.73 E-value=1.2 Score=47.18 Aligned_cols=89 Identities=16% Similarity=0.166 Sum_probs=52.7
Q ss_pred CCCEEEEecCCChhHHHHHHHH---HhcCCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCC
Q 035988 106 GRDVLVIMAAGGGKSLCYQLPA---VLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEG 182 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~lpa---l~~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (692)
|+-+.+.+|+|+|||...+--+ ...++.+++|.+--++-.+ .++.+|+..
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~---~a~~lGvd~------------------------ 107 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPV---YAKKLGVDL------------------------ 107 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHH---HHHHcCCCH------------------------
Confidence 5678899999999996443212 2346788888876655443 445555321
Q ss_pred CccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCccccc
Q 035988 183 ELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCS 225 (692)
Q Consensus 183 ~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~ 225 (692)
-++++..|.... .....+........+++||||=+-.+.
T Consensus 108 -~~l~v~~p~~~e---q~l~i~~~li~s~~~~lIVIDSvaal~ 146 (325)
T cd00983 108 -DNLLISQPDTGE---QALEIADSLVRSGAVDLIVVDSVAALV 146 (325)
T ss_pred -HHheecCCCCHH---HHHHHHHHHHhccCCCEEEEcchHhhc
Confidence 134455554322 222233333333578999999977654
No 370
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=90.72 E-value=1.1 Score=47.48 Aligned_cols=89 Identities=18% Similarity=0.190 Sum_probs=52.1
Q ss_pred CCCEEEEecCCChhHHHHH-H--HHHhcCCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCC
Q 035988 106 GRDVLVIMAAGGGKSLCYQ-L--PAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEG 182 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~-l--pal~~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (692)
|+-+.+.+|+|+|||...+ + -+...++.+++|..-.++-.+ .++.+|+..
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~---~a~~lGvd~------------------------ 107 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV---YARKLGVDI------------------------ 107 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHH---HHHHcCCCH------------------------
Confidence 5678999999999996543 2 122345677777655444332 345555431
Q ss_pred CccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCccccc
Q 035988 183 ELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCS 225 (692)
Q Consensus 183 ~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~ 225 (692)
-++++..|.... .....+........+++||||=+-.+.
T Consensus 108 -~~l~v~~p~~~e---q~l~~~~~li~~~~~~lIVIDSv~al~ 146 (321)
T TIGR02012 108 -DNLLVSQPDTGE---QALEIAETLVRSGAVDIIVVDSVAALV 146 (321)
T ss_pred -HHeEEecCCCHH---HHHHHHHHHhhccCCcEEEEcchhhhc
Confidence 145566665432 222233333333578999999988764
No 371
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.68 E-value=1.7 Score=50.36 Aligned_cols=17 Identities=24% Similarity=0.251 Sum_probs=14.5
Q ss_pred EEEEecCCChhHHHHHH
Q 035988 109 VLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 109 viv~apTGsGKTl~~~l 125 (692)
+|+.||.|+|||.+..+
T Consensus 41 ~Lf~Gp~G~GKTtlA~~ 57 (585)
T PRK14950 41 YLFTGPRGVGKTSTARI 57 (585)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 58999999999987654
No 372
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=90.65 E-value=1.8 Score=51.60 Aligned_cols=18 Identities=22% Similarity=0.287 Sum_probs=15.6
Q ss_pred CCCEEEEecCCChhHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCY 123 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~ 123 (692)
..++++++|+|+|||...
T Consensus 203 ~~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIA 220 (731)
T ss_pred CCceEEECCCCCCHHHHH
Confidence 357999999999999865
No 373
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=90.61 E-value=0.58 Score=53.66 Aligned_cols=59 Identities=24% Similarity=0.165 Sum_probs=46.4
Q ss_pred CCCHHHHHHHHHHHcC--CCEEEEecCCChhHHHHHHHHH----hcCCeEEEEcccHHHHHHHHH
Q 035988 91 AYRANQQEIINAVLSG--RDVLVIMAAGGGKSLCYQLPAV----LREGIALVVSPLLSLIQDQVM 149 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~g--~dviv~apTGsGKTl~~~lpal----~~~~~~lvi~Pt~~L~~q~~~ 149 (692)
..+|+|.+..+++... +.+.+..++-+|||.+.+.-+. ..+..++++.||..++++..+
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~~~l~v~Pt~~~a~~~~~ 80 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDPGPMLYVQPTDDAAKDFSK 80 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCCCCEEEEEEcHHHHHHHHH
Confidence 5679999999987654 5689999999999995543221 235789999999999998773
No 374
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=90.60 E-value=2.4 Score=45.21 Aligned_cols=17 Identities=29% Similarity=0.448 Sum_probs=14.9
Q ss_pred CEEEEecCCChhHHHHH
Q 035988 108 DVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 108 dviv~apTGsGKTl~~~ 124 (692)
.+++.+|+|+|||....
T Consensus 38 ~lll~Gp~GtGKT~la~ 54 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVR 54 (337)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 69999999999997654
No 375
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=90.58 E-value=1.3 Score=56.20 Aligned_cols=57 Identities=19% Similarity=0.204 Sum_probs=42.8
Q ss_pred CCCHHHHHHHHHHHcC--CCEEEEecCCChhHHHH--HHHHHh-----cCCeEEEEcccHHHHHHH
Q 035988 91 AYRANQQEIINAVLSG--RDVLVIMAAGGGKSLCY--QLPAVL-----REGIALVVSPLLSLIQDQ 147 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~g--~dviv~apTGsGKTl~~--~lpal~-----~~~~~lvi~Pt~~L~~q~ 147 (692)
.+++.|++|+..++.. +-+++.+..|+|||... ++-++. .+..++.++||-.-+...
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHHH
Confidence 6899999999999965 66899999999999763 222221 135677899997766544
No 376
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=90.53 E-value=1.3 Score=46.97 Aligned_cols=57 Identities=14% Similarity=0.060 Sum_probs=33.2
Q ss_pred HHHHHHc-----CCCEEEEecCCChhHH-HHHHHH--Hh------cCCeEEEEcccHHH-HHHHHHHHHHcC
Q 035988 99 IINAVLS-----GRDVLVIMAAGGGKSL-CYQLPA--VL------REGIALVVSPLLSL-IQDQVMCLAALG 155 (692)
Q Consensus 99 ai~~il~-----g~dviv~apTGsGKTl-~~~lpa--l~------~~~~~lvi~Pt~~L-~~q~~~~l~~~g 155 (692)
.++.++. |.-+.+.+|+|+|||. |.++.. .. .++++++|.---.+ .++..+.+..+|
T Consensus 84 ~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g 155 (313)
T TIGR02238 84 ALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFG 155 (313)
T ss_pred HHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcC
Confidence 3455554 3567899999999994 433322 11 24678887754433 344444455554
No 377
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.52 E-value=3.5 Score=47.81 Aligned_cols=42 Identities=21% Similarity=0.281 Sum_probs=25.4
Q ss_pred hcCCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecc
Q 035988 209 HAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTAT 256 (692)
Q Consensus 209 ~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT 256 (692)
......++||||+|.+..- ....|.......|+.-++.|.+|
T Consensus 124 ~~~~~KVvIIdEad~Lt~~------a~naLLK~LEePp~~tv~IL~t~ 165 (620)
T PRK14954 124 QKGRYRVYIIDEVHMLSTA------AFNAFLKTLEEPPPHAIFIFATT 165 (620)
T ss_pred hcCCCEEEEEeChhhcCHH------HHHHHHHHHhCCCCCeEEEEEeC
Confidence 3457889999999998642 22334445555555444445444
No 378
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.49 E-value=2.7 Score=47.41 Aligned_cols=18 Identities=17% Similarity=0.213 Sum_probs=14.8
Q ss_pred EEEEecCCChhHHHHHHH
Q 035988 109 VLVIMAAGGGKSLCYQLP 126 (692)
Q Consensus 109 viv~apTGsGKTl~~~lp 126 (692)
.++.||.|+|||.+..+-
T Consensus 41 yLf~Gp~G~GKTtlAr~l 58 (486)
T PRK14953 41 YIFAGPRGTGKTTIARIL 58 (486)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 578999999999877553
No 379
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=90.49 E-value=0.48 Score=49.84 Aligned_cols=58 Identities=12% Similarity=0.149 Sum_probs=42.1
Q ss_pred CCCCCCHHHHHHHHHHHcCC-CEEEEecCCChhHHH-HHHHHH-hcCCeEEEEcccHHHHH
Q 035988 88 GIPAYRANQQEIINAVLSGR-DVLVIMAAGGGKSLC-YQLPAV-LREGIALVVSPLLSLIQ 145 (692)
Q Consensus 88 g~~~~r~~Q~~ai~~il~g~-dviv~apTGsGKTl~-~~lpal-~~~~~~lvi~Pt~~L~~ 145 (692)
.|..+++-|...+..+...+ ++++++.||||||.. ..+-+. -...++|.|=.|.+|--
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTlLNal~~~i~~~eRvItiEDtaELql 214 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLLNALSGFIDSDERVITIEDTAELQL 214 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHHHHHHhcCCCcccEEEEeehhhhcc
Confidence 45589999999988887766 999999999999963 222222 22357888777777643
No 380
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=90.39 E-value=1.7 Score=47.18 Aligned_cols=20 Identities=25% Similarity=0.474 Sum_probs=16.8
Q ss_pred cCCCEEEEecCCChhHHHHH
Q 035988 105 SGRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~~ 124 (692)
.|+.+++++|+|+|||....
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~ 186 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQ 186 (415)
T ss_pred CCCEEEEECCCCCChhHHHH
Confidence 47789999999999997543
No 381
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=90.38 E-value=0.24 Score=57.64 Aligned_cols=57 Identities=12% Similarity=0.055 Sum_probs=44.7
Q ss_pred CCEEEEecCCChhHHHHHHHHHhc-CCeEEEEcccHHHHHHHHHHHHH-cCCCEEEEec
Q 035988 107 RDVLVIMAAGGGKSLCYQLPAVLR-EGIALVVSPLLSLIQDQVMCLAA-LGIPAHMLTS 163 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~lpal~~-~~~~lvi~Pt~~L~~q~~~~l~~-~gi~~~~~~~ 163 (692)
.++++.||||||||..+.+|.++. ++.+||+=|--++..-.....++ .|-++..+.-
T Consensus 176 ~HvlviapTgSGKgvg~ViPnLL~~~~S~VV~D~KGE~~~~Tag~R~~~~G~~V~~fdP 234 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLLSWGHSSVITDLKGELWALTAGWRQKHAKNKVLRFEP 234 (636)
T ss_pred ceEEEEecCCCCCceEEEccchhhCCCCEEEEeCcHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 579999999999999999999875 57788888999987766555534 4666666554
No 382
>PRK08760 replicative DNA helicase; Provisional
Probab=90.34 E-value=1.8 Score=48.60 Aligned_cols=145 Identities=23% Similarity=0.173 Sum_probs=67.8
Q ss_pred CCCEEEEecCCChhHHHHHHHH----HhcCCeEEEEcccHHHHHHHHHHHHHc--CCCEEEE-ecCCChhHHHHHHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQLPA----VLREGIALVVSPLLSLIQDQVMCLAAL--GIPAHML-TSTTSKEDEKFIYKALE 178 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~lpa----l~~~~~~lvi~Pt~~L~~q~~~~l~~~--gi~~~~~-~~~~~~~~~~~~~~~l~ 178 (692)
|.=+++.|.||.|||...+--+ ...+..+++++.- .=..|+..++... +++...+ .|..+..+...+...+.
T Consensus 229 G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlE-Ms~~ql~~Rl~a~~s~i~~~~i~~g~l~~~e~~~~~~a~~ 307 (476)
T PRK08760 229 TDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSME-MSASQLAMRLISSNGRINAQRLRTGALEDEDWARVTGAIK 307 (476)
T ss_pred CceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEecc-CCHHHHHHHHHHhhCCCcHHHHhcCCCCHHHHHHHHHHHH
Confidence 3447889999999997544212 1234556666432 2234555555443 2332222 23344444333322222
Q ss_pred hcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCC-Cch-----HHHHHHHHHHhhCCCCCEEE
Q 035988 179 KGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGH-DFR-----PDYKNLGILKTQFPDVPMMA 252 (692)
Q Consensus 179 ~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~-~fr-----~~~~~l~~l~~~~~~~~~i~ 252 (692)
.-. ...+.|.....+. ...+............+++||||=.+.+..-+. +-+ ...+.|..+...+ ++|+++
T Consensus 308 ~l~-~~~l~I~d~~~~t-~~~I~~~~r~l~~~~~~~lVvIDyLql~~~~~~~~~r~~ei~~Isr~LK~lAkel-~ipVi~ 384 (476)
T PRK08760 308 MLK-ETKIFIDDTPGVS-PEVLRSKCRRLKREHDLGLIVIDYLQLMSVPGNSENRATEISEISRSLKGLAKEL-NVPVIA 384 (476)
T ss_pred HHh-cCCEEEeCCCCCC-HHHHHHHHHHHHHhcCCCEEEEecHHhcCCCCCCcccHHHHHHHHHHHHHHHHHh-CCEEEE
Confidence 211 2345444322221 112222222222234689999999998853221 111 1223333333333 677777
Q ss_pred Ee
Q 035988 253 LT 254 (692)
Q Consensus 253 lS 254 (692)
+|
T Consensus 385 ls 386 (476)
T PRK08760 385 LS 386 (476)
T ss_pred ee
Confidence 76
No 383
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=90.17 E-value=1.6 Score=43.45 Aligned_cols=32 Identities=19% Similarity=0.094 Sum_probs=21.3
Q ss_pred CCCEEEEecCCChhHHHHH-HHH--HhcCCeEEEE
Q 035988 106 GRDVLVIMAAGGGKSLCYQ-LPA--VLREGIALVV 137 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~-lpa--l~~~~~~lvi 137 (692)
|.-+++.+++|+|||...+ +.. ...+..++++
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi 53 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYI 53 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 4558899999999996443 321 2335567776
No 384
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.13 E-value=2.5 Score=48.14 Aligned_cols=17 Identities=29% Similarity=0.241 Sum_probs=14.5
Q ss_pred EEEEecCCChhHHHHHH
Q 035988 109 VLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 109 viv~apTGsGKTl~~~l 125 (692)
+|+.||.|+|||..+.+
T Consensus 41 ~Lf~Gp~GvGKTTlAr~ 57 (546)
T PRK14957 41 YLFTGTRGVGKTTLGRL 57 (546)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999986654
No 385
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=90.05 E-value=1.2 Score=50.28 Aligned_cols=108 Identities=19% Similarity=0.210 Sum_probs=63.9
Q ss_pred HHHHHHcC-----CCEEEEecCCChhHHHHH-H--HHHhcCCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHH
Q 035988 99 IINAVLSG-----RDVLVIMAAGGGKSLCYQ-L--PAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDE 170 (692)
Q Consensus 99 ai~~il~g-----~dviv~apTGsGKTl~~~-l--pal~~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~ 170 (692)
.++.++.| .-+++.+|+|+|||...+ + -++.++.++++++ +-+-..|....+..+|+.. .
T Consensus 251 ~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s-~eEs~~~i~~~~~~lg~~~---------~-- 318 (484)
T TIGR02655 251 RLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA-YEESRAQLLRNAYSWGIDF---------E-- 318 (484)
T ss_pred hHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE-eeCCHHHHHHHHHHcCCCh---------H--
Confidence 45666643 568999999999996432 2 2234456788876 6666778888888887532 1
Q ss_pred HHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCccccc
Q 035988 171 KFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCS 225 (692)
Q Consensus 171 ~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~ 225 (692)
.....+ ...++-.-|..+. ...+...+.......+.+++|||=...+.
T Consensus 319 ----~~~~~g--~l~~~~~~p~~~~-~~~~~~~i~~~i~~~~~~~vvIDsi~~~~ 366 (484)
T TIGR02655 319 ----EMEQQG--LLKIICAYPESAG-LEDHLQIIKSEIADFKPARIAIDSLSALA 366 (484)
T ss_pred ----HHhhCC--cEEEEEcccccCC-hHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 001111 3444443443322 22344444444444568899999888653
No 386
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.04 E-value=2.6 Score=48.54 Aligned_cols=18 Identities=22% Similarity=0.218 Sum_probs=15.2
Q ss_pred CEEEEecCCChhHHHHHH
Q 035988 108 DVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 108 dviv~apTGsGKTl~~~l 125 (692)
.+|+.+|.|+|||.++.+
T Consensus 40 a~Lf~GPpG~GKTtiAri 57 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARI 57 (624)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 478999999999987654
No 387
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.04 E-value=2.1 Score=48.78 Aligned_cols=17 Identities=24% Similarity=0.253 Sum_probs=14.5
Q ss_pred EEEEecCCChhHHHHHH
Q 035988 109 VLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 109 viv~apTGsGKTl~~~l 125 (692)
.|+.||.|+|||.++.+
T Consensus 41 ~Lf~Gp~G~GKTt~A~~ 57 (527)
T PRK14969 41 YLFTGTRGVGKTTLARI 57 (527)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999987654
No 388
>PRK06904 replicative DNA helicase; Validated
Probab=90.02 E-value=4.6 Score=45.36 Aligned_cols=118 Identities=18% Similarity=0.142 Sum_probs=55.6
Q ss_pred CCCEEEEecCCChhHHHHH-HH---HHhcCCeEEEEcccHHHHHHHHHHHHHc--CCCEEEE-ec-CCChhHHHHHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQ-LP---AVLREGIALVVSPLLSLIQDQVMCLAAL--GIPAHML-TS-TTSKEDEKFIYKAL 177 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~-lp---al~~~~~~lvi~Pt~~L~~q~~~~l~~~--gi~~~~~-~~-~~~~~~~~~~~~~l 177 (692)
|.=+++.|.||.|||...+ +. +...+..+++++.= -=..|...++-.. +++...+ .+ ..+..+...+....
T Consensus 221 G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlE-Ms~~ql~~Rlla~~s~v~~~~i~~g~~l~~~e~~~~~~a~ 299 (472)
T PRK06904 221 SDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLE-MPAEQIMMRMLASLSRVDQTKIRTGQNLDQQDWAKISSTV 299 (472)
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEecc-CCHHHHHHHHHHhhCCCCHHHhccCCCCCHHHHHHHHHHH
Confidence 3447789999999997543 11 12234566666532 2344444444332 4443333 33 34554444333322
Q ss_pred HhcCCCccEEEe-ChhhhhchHHHHHHHHhhhh-cCCceEEEEeCcccccc
Q 035988 178 EKGEGELKMLYV-TPEKISKSKRFMSKLEKCHH-AGRLSLISIDEAHCCSQ 226 (692)
Q Consensus 178 ~~~~~~~~Ili~-Tpe~l~~~~~~~~~l~~~~~-~~~l~~iVIDEaH~l~~ 226 (692)
..-.....+.|- +|. +. ...+......... ...+++||||=.+.+..
T Consensus 300 ~~l~~~~~l~I~d~~~-~t-~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~ 348 (472)
T PRK06904 300 GMFKQKPNLYIDDSSG-LT-PTELRSRARRVYRENGGLSLIMVDYLQLMRA 348 (472)
T ss_pred HHHhcCCCEEEECCCC-CC-HHHHHHHHHHHHHhCCCCCEEEEecHHhcCC
Confidence 211112334442 222 11 1112222222111 13589999999998854
No 389
>PRK11054 helD DNA helicase IV; Provisional
Probab=90.00 E-value=0.7 Score=54.24 Aligned_cols=78 Identities=14% Similarity=0.171 Sum_probs=54.5
Q ss_pred CcHHHHHHHHHhcC---CCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHH---Hh----cCCeEEEEcccHHHH
Q 035988 75 WDSRADDVRLNVFG---IPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPA---VL----REGIALVVSPLLSLI 144 (692)
Q Consensus 75 ~~~~~~~~l~~~fg---~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpa---l~----~~~~~lvi~Pt~~L~ 144 (692)
|.+.........|. -..+++-|++|+.. ...+++|.|..|||||.+..--+ +. .+..+|+++.++..+
T Consensus 177 ~~~~~l~~~~~~f~~~e~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA 254 (684)
T PRK11054 177 WTEAMLEEYADFFSQVESSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAA 254 (684)
T ss_pred HHHHHHHHHHHHHHhccCCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHH
Confidence 33344444444442 24699999999864 34578999999999997654221 11 235899999999999
Q ss_pred HHHHHHHHHc
Q 035988 145 QDQVMCLAAL 154 (692)
Q Consensus 145 ~q~~~~l~~~ 154 (692)
..+.+++...
T Consensus 255 ~em~eRL~~~ 264 (684)
T PRK11054 255 EEMDERIRER 264 (684)
T ss_pred HHHHHHHHHh
Confidence 9999888764
No 390
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=89.95 E-value=0.6 Score=55.02 Aligned_cols=61 Identities=18% Similarity=0.166 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHcCCCEEEEecCCChhHHHHH--HHHHh-c----CCeEEEEcccHHHHHHHHHHHHHc
Q 035988 92 YRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQ--LPAVL-R----EGIALVVSPLLSLIQDQVMCLAAL 154 (692)
Q Consensus 92 ~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~--lpal~-~----~~~~lvi~Pt~~L~~q~~~~l~~~ 154 (692)
++|-|.+++.+ ...+++|.|+.|||||.+.. +.-+. . +..+|+|+.|+..+.+..+++.+.
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~ 69 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKT 69 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 78999999875 46789999999999996543 22222 2 357899999999999988888753
No 391
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=89.95 E-value=1.1 Score=44.63 Aligned_cols=53 Identities=17% Similarity=0.107 Sum_probs=28.9
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCC-eEEEEcccHHHHHHHHHHHHHcCCCEEE
Q 035988 108 DVLVIMAAGGGKSLCYQLPAVLREG-IALVVSPLLSLIQDQVMCLAALGIPAHM 160 (692)
Q Consensus 108 dviv~apTGsGKTl~~~lpal~~~~-~~lvi~Pt~~L~~q~~~~l~~~gi~~~~ 160 (692)
++|+++|+|.|||..+.+-+-..+. ....-.|..+-..|....+..++-....
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl~~il~~l~~~~IL 105 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDLAAILTNLKEGDIL 105 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHHHHHHHT--TT-EE
T ss_pred eEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHHHHHHHhcCCCcEE
Confidence 5899999999999766654443332 2333345555455555555555433333
No 392
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=89.87 E-value=2 Score=45.80 Aligned_cols=137 Identities=15% Similarity=0.151 Sum_probs=75.1
Q ss_pred CCCHHHHHHHHHHHcCCC------EEEEecCCChhHHHHHHHHHhc--CCeEEEEcc-----cHHHHHHHHHHHHHcCCC
Q 035988 91 AYRANQQEIINAVLSGRD------VLVIMAAGGGKSLCYQLPAVLR--EGIALVVSP-----LLSLIQDQVMCLAALGIP 157 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~g~d------viv~apTGsGKTl~~~lpal~~--~~~~lvi~P-----t~~L~~q~~~~l~~~gi~ 157 (692)
..|..|-..+..++..++ +++.|.+|+|||..-. .+.+ .-..+++.+ .+-|.+.+.....
T Consensus 9 ~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r--~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~----- 81 (438)
T KOG2543|consen 9 PCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVR--QLLRKLNLENVWLNCVECFTYAILLEKILNKSQ----- 81 (438)
T ss_pred cchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHH--HHHhhcCCcceeeehHHhccHHHHHHHHHHHhc-----
Confidence 467888888888887665 4899999999997532 2222 223444443 2333333333322
Q ss_pred EEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHH---hhhhcCCceEEEEeCcccccccCCCchHH
Q 035988 158 AHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLE---KCHHAGRLSLISIDEAHCCSQWGHDFRPD 234 (692)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~---~~~~~~~l~~iVIDEaH~l~~~g~~fr~~ 234 (692)
..+.... -+=++.+.+. .|...+. ...+...--++|+|-|+.+-+.+...-+.
T Consensus 82 ----~~d~dg~-----------------~~~~~~en~~---d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~ 137 (438)
T KOG2543|consen 82 ----LADKDGD-----------------KVEGDAENFS---DFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQC 137 (438)
T ss_pred ----cCCCchh-----------------hhhhHHHHHH---HHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHH
Confidence 0111111 0001112221 1222222 22222456789999999999888666666
Q ss_pred HHHHHHHHhhCCCCCEEEEecccchh
Q 035988 235 YKNLGILKTQFPDVPMMALTATATQK 260 (692)
Q Consensus 235 ~~~l~~l~~~~~~~~~i~lSAT~~~~ 260 (692)
+.++..+... +.-.+.+|++..+.
T Consensus 138 l~~L~el~~~--~~i~iils~~~~e~ 161 (438)
T KOG2543|consen 138 LFRLYELLNE--PTIVIILSAPSCEK 161 (438)
T ss_pred HHHHHHHhCC--CceEEEEeccccHH
Confidence 6665555544 23457889988764
No 393
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=89.83 E-value=3.3 Score=41.80 Aligned_cols=51 Identities=20% Similarity=0.154 Sum_probs=33.4
Q ss_pred cCCCEEEEecCCChhHHHH-HHHH-H-hcCCeEEEEcccHHHHHHHHHHHHHcCC
Q 035988 105 SGRDVLVIMAAGGGKSLCY-QLPA-V-LREGIALVVSPLLSLIQDQVMCLAALGI 156 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~-~lpa-l-~~~~~~lvi~Pt~~L~~q~~~~l~~~gi 156 (692)
.|.-+++.+|+|+|||... ++-. + ..+.++++++.. +-..+..+.+..+|.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e-~~~~~~~~~~~~~g~ 76 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ-LTTTEFIKQMMSLGY 76 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC-CCHHHHHHHHHHhCC
Confidence 4677999999999999763 3322 3 345677777743 333565666666654
No 394
>PRK09165 replicative DNA helicase; Provisional
Probab=89.78 E-value=2.4 Score=48.00 Aligned_cols=117 Identities=13% Similarity=0.075 Sum_probs=58.0
Q ss_pred CCEEEEecCCChhHHHHHHHHH----h--------------cCCeEEEEcccHHHHHHHHHHHHHc--CCCEEE-EecCC
Q 035988 107 RDVLVIMAAGGGKSLCYQLPAV----L--------------REGIALVVSPLLSLIQDQVMCLAAL--GIPAHM-LTSTT 165 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~lpal----~--------------~~~~~lvi~Pt~~L~~q~~~~l~~~--gi~~~~-~~~~~ 165 (692)
.=+++.|+||.|||...+--+. . .+..+++++. -.=..|...++... +++... ..+..
T Consensus 218 ~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSl-EMs~~ql~~R~la~~s~v~~~~i~~~~l 296 (497)
T PRK09165 218 DLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSL-EMSAEQLATRILSEQSEISSSKIRRGKI 296 (497)
T ss_pred ceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeC-cCCHHHHHHHHHHHhcCCCHHHHhcCCC
Confidence 3478899999999965431111 1 1345666643 22345555555433 444332 23444
Q ss_pred ChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccc
Q 035988 166 SKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQ 226 (692)
Q Consensus 166 ~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~ 226 (692)
+..+...+........ ...+.|-....+. ...+............+++||||=.|.+..
T Consensus 297 ~~~e~~~l~~a~~~l~-~~~l~I~d~~~~t-i~~i~~~ir~l~~~~~~~lvvIDyLqli~~ 355 (497)
T PRK09165 297 SEEDFEKLVDASQELQ-KLPLYIDDTPALS-ISQLRARARRLKRQHGLDLLVVDYLQLIRG 355 (497)
T ss_pred CHHHHHHHHHHHHHHh-cCCeEEeCCCCCC-HHHHHHHHHHHHHhcCCCEEEEcchHhccC
Confidence 5444444433322211 3345544322221 112222222222234689999999998864
No 395
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=89.71 E-value=3.7 Score=45.40 Aligned_cols=53 Identities=19% Similarity=0.236 Sum_probs=30.8
Q ss_pred CEEEEecCCChhHHHHH-HHHH-h--cCCeEEEEc--ccHHHHHHHHHH-HHHcCCCEEE
Q 035988 108 DVLVIMAAGGGKSLCYQ-LPAV-L--REGIALVVS--PLLSLIQDQVMC-LAALGIPAHM 160 (692)
Q Consensus 108 dviv~apTGsGKTl~~~-lpal-~--~~~~~lvi~--Pt~~L~~q~~~~-l~~~gi~~~~ 160 (692)
-+++++++|+|||.+.. +... . .+.+++++. +.|.-+.+|... ....|+++..
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~ 160 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFA 160 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEe
Confidence 47899999999997643 3222 2 244444443 345555555544 4556766544
No 396
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=89.70 E-value=0.76 Score=48.70 Aligned_cols=53 Identities=13% Similarity=0.274 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHH-cCCCEEEEecCCChhHHHH--HHHHHh---cCCeEEEEcccHHH
Q 035988 91 AYRANQQEIINAVL-SGRDVLVIMAAGGGKSLCY--QLPAVL---REGIALVVSPLLSL 143 (692)
Q Consensus 91 ~~r~~Q~~ai~~il-~g~dviv~apTGsGKTl~~--~lpal~---~~~~~lvi~Pt~~L 143 (692)
.+++.|.+.+..+. .+++++++++||||||... ++-.+. ...+++++=.+.+|
T Consensus 128 ~~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 128 IMTEAQASVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCccc
Confidence 36788887766655 5678999999999999642 222221 23456666566665
No 397
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=89.64 E-value=1.9 Score=47.82 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=31.2
Q ss_pred CCceEEEEeCcccccc----cCCCchHHHHHHHHHHhh----CCCCCEEEEecccchhhHH
Q 035988 211 GRLSLISIDEAHCCSQ----WGHDFRPDYKNLGILKTQ----FPDVPMMALTATATQKVQN 263 (692)
Q Consensus 211 ~~l~~iVIDEaH~l~~----~g~~fr~~~~~l~~l~~~----~~~~~~i~lSAT~~~~~~~ 263 (692)
+..+.|.|||.|.+.. |...|..+ .|..+... -++-.+|.+-||--++..+
T Consensus 395 ~APcIIFIDEiDavG~kR~~~~~~y~kq--TlNQLLvEmDGF~qNeGiIvigATNfpe~LD 453 (752)
T KOG0734|consen 395 RAPCIIFIDEIDAVGGKRNPSDQHYAKQ--TLNQLLVEMDGFKQNEGIIVIGATNFPEALD 453 (752)
T ss_pred cCCeEEEEechhhhcccCCccHHHHHHH--HHHHHHHHhcCcCcCCceEEEeccCChhhhh
Confidence 4678999999999853 11112222 12233332 2577899999997766554
No 398
>PRK05595 replicative DNA helicase; Provisional
Probab=89.60 E-value=1.8 Score=48.29 Aligned_cols=145 Identities=17% Similarity=0.139 Sum_probs=68.4
Q ss_pred CCEEEEecCCChhHHHHH-HH---HHhcCCeEEEEcccHHHHHHHHHHHHH--cCCCEEEE-ecCCChhHHHHHHHHHHh
Q 035988 107 RDVLVIMAAGGGKSLCYQ-LP---AVLREGIALVVSPLLSLIQDQVMCLAA--LGIPAHML-TSTTSKEDEKFIYKALEK 179 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~-lp---al~~~~~~lvi~Pt~~L~~q~~~~l~~--~gi~~~~~-~~~~~~~~~~~~~~~l~~ 179 (692)
.=+++.|.||.|||...+ +. +...+..+++++.- .=..|...++-. .+++...+ .+..+..+...+......
T Consensus 202 ~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlE-ms~~~l~~R~~a~~~~v~~~~~~~~~l~~~e~~~~~~~~~~ 280 (444)
T PRK05595 202 DMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLE-MSKEQLAYKLLCSEANVDMLRLRTGNLEDKDWENIARASGP 280 (444)
T ss_pred cEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecC-CCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHH
Confidence 346789999999997543 22 22345667776542 223444444332 24443333 233444443333332221
Q ss_pred cCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCC-CchH-HH----HHHHHHHhhCCCCCEEEE
Q 035988 180 GEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGH-DFRP-DY----KNLGILKTQFPDVPMMAL 253 (692)
Q Consensus 180 ~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~-~fr~-~~----~~l~~l~~~~~~~~~i~l 253 (692)
.. ...+.|-.+..+. ...+............+++||||=.|.+..-+. +-+. .+ +.|+.+...+ ++|++++
T Consensus 281 l~-~~~l~i~d~~~~t-~~~i~~~~r~~~~~~~~~~vvIDylql~~~~~~~~~r~~~v~~is~~LK~lAke~-~i~vi~l 357 (444)
T PRK05595 281 LA-AAKIFIDDTAGVS-VMEMRSKCRRLKIEHGIDMILIDYLQLMSGGKGSESRQQEVSEISRSIKALAKEM-ECPVIAL 357 (444)
T ss_pred Hh-cCCEEEECCCCCC-HHHHHHHHHHHHHhcCCCEEEEeHHHhccCCCCCccHHHHHHHHHHHHHHHHHHh-CCeEEEe
Confidence 11 2344443222221 122333333322234689999999999864221 1121 12 2222233222 7788777
Q ss_pred ec
Q 035988 254 TA 255 (692)
Q Consensus 254 SA 255 (692)
|-
T Consensus 358 sQ 359 (444)
T PRK05595 358 SQ 359 (444)
T ss_pred ec
Confidence 64
No 399
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=89.56 E-value=3.6 Score=45.97 Aligned_cols=15 Identities=20% Similarity=0.355 Sum_probs=13.1
Q ss_pred CCEEEEecCCChhHH
Q 035988 107 RDVLVIMAAGGGKSL 121 (692)
Q Consensus 107 ~dviv~apTGsGKTl 121 (692)
..+++.|++|+|||.
T Consensus 142 npl~i~G~~G~GKTH 156 (450)
T PRK14087 142 NPLFIYGESGMGKTH 156 (450)
T ss_pred CceEEECCCCCcHHH
Confidence 348999999999995
No 400
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=89.52 E-value=2.1 Score=49.09 Aligned_cols=15 Identities=20% Similarity=0.295 Sum_probs=13.1
Q ss_pred CEEEEecCCChhHHH
Q 035988 108 DVLVIMAAGGGKSLC 122 (692)
Q Consensus 108 dviv~apTGsGKTl~ 122 (692)
.+++.+++|+|||..
T Consensus 316 pL~LyG~sGsGKTHL 330 (617)
T PRK14086 316 PLFIYGESGLGKTHL 330 (617)
T ss_pred cEEEECCCCCCHHHH
Confidence 389999999999963
No 401
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=89.46 E-value=6 Score=44.00 Aligned_cols=120 Identities=19% Similarity=0.199 Sum_probs=87.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhc
Q 035988 131 EGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHA 210 (692)
Q Consensus 131 ~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~ 210 (692)
+.++||.+=|+-.+++..+.+...|+++.+++++...-++..+.+.++.| .++++|+-. .|.....+
T Consensus 446 ~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G--~~DvLVGIN-----------LLREGLDi 512 (663)
T COG0556 446 NERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLG--EFDVLVGIN-----------LLREGLDL 512 (663)
T ss_pred CCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcC--CccEEEeeh-----------hhhccCCC
Confidence 56999999999999999999999999999999999999999999999988 999999842 23445567
Q ss_pred CCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHH
Q 035988 211 GRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDL 265 (692)
Q Consensus 211 ~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i 265 (692)
..+++|.|=+||.-. +-.+-+..+..++.-.+.. +-.+|+..-..+......+
T Consensus 513 PEVsLVAIlDADKeG-FLRse~SLIQtIGRAARN~-~GkvIlYAD~iT~sM~~Ai 565 (663)
T COG0556 513 PEVSLVAILDADKEG-FLRSERSLIQTIGRAARNV-NGKVILYADKITDSMQKAI 565 (663)
T ss_pred cceeEEEEeecCccc-cccccchHHHHHHHHhhcc-CCeEEEEchhhhHHHHHHH
Confidence 789999999999832 1111233333434333333 3356666555555554444
No 402
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.41 E-value=0.39 Score=53.05 Aligned_cols=32 Identities=22% Similarity=0.259 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHHHcCCC--EEEEecCCChhHHH
Q 035988 91 AYRANQQEIINAVLSGRD--VLVIMAAGGGKSLC 122 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~g~d--viv~apTGsGKTl~ 122 (692)
.+.+.|.+.+..++.... +++.+|||||||.+
T Consensus 241 g~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT 274 (500)
T COG2804 241 GMSPFQLARLLRLLNRPQGLILVTGPTGSGKTTT 274 (500)
T ss_pred CCCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH
Confidence 457888888888887654 78999999999975
No 403
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=89.39 E-value=2.9 Score=46.48 Aligned_cols=116 Identities=18% Similarity=0.126 Sum_probs=54.3
Q ss_pred CCCEEEEecCCChhHHHHH-HHH--Hh-cCCeEEEEcccHHHHHHHHHHHHHc--CCCEEEE-ecCCChhHHHHHHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQ-LPA--VL-REGIALVVSPLLSLIQDQVMCLAAL--GIPAHML-TSTTSKEDEKFIYKALE 178 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~-lpa--l~-~~~~~lvi~Pt~~L~~q~~~~l~~~--gi~~~~~-~~~~~~~~~~~~~~~l~ 178 (692)
|.=+++.|+||+|||...+ +.. .. .+..+++++.- .=..+...++... ++....+ .+.....+.........
T Consensus 195 G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlE-m~~~~i~~R~~~~~~~v~~~~~~~g~l~~~~~~~~~~a~~ 273 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLE-MSAEQLAMRMLSSESRVDSQKLRTGKLSDEDWEKLTSAAG 273 (434)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCc-CCHHHHHHHHHHHhcCCCHHHhccCCCCHHHHHHHHHHHH
Confidence 3457899999999996443 211 12 34556666532 2233444444332 3433222 23344433322222222
Q ss_pred hcCCCccEEE-eChhhhhchHHHHHHHHhhhhcCCceEEEEeCccccc
Q 035988 179 KGEGELKMLY-VTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCS 225 (692)
Q Consensus 179 ~~~~~~~Ili-~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~ 225 (692)
... ...+.| .+|.. +...+...+........+++||||=.+.+.
T Consensus 274 ~l~-~~~l~i~d~~~~--~~~~i~~~i~~~~~~~~~~~vvID~l~~i~ 318 (434)
T TIGR00665 274 KLS-EAPLYIDDTPGL--TITELRAKARRLKREHGLGLIVIDYLQLMS 318 (434)
T ss_pred HHh-cCCEEEECCCCC--CHHHHHHHHHHHHHhcCCCEEEEcchHhcC
Confidence 111 223333 33331 111233333322222468999999998875
No 404
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=89.32 E-value=4.4 Score=35.95 Aligned_cols=79 Identities=20% Similarity=0.287 Sum_probs=61.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhc
Q 035988 131 EGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHA 210 (692)
Q Consensus 131 ~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~ 210 (692)
++++||.+++..-+++..+.+.+.+..+..+++..+...+..+...+..+ ...|+++|.- +. ...++
T Consensus 28 ~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~--~~~ili~t~~-~~----------~G~d~ 94 (131)
T cd00079 28 GGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREG--EIVVLVATDV-IA----------RGIDL 94 (131)
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcC--CCcEEEEcCh-hh----------cCcCh
Confidence 57899999999999999999998889999999999988888888888876 6889998864 21 12233
Q ss_pred CCceEEEEeCcc
Q 035988 211 GRLSLISIDEAH 222 (692)
Q Consensus 211 ~~l~~iVIDEaH 222 (692)
...+.+|+....
T Consensus 95 ~~~~~vi~~~~~ 106 (131)
T cd00079 95 PNVSVVINYDLP 106 (131)
T ss_pred hhCCEEEEeCCC
Confidence 456666666553
No 405
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=89.28 E-value=3.2 Score=45.00 Aligned_cols=19 Identities=21% Similarity=0.452 Sum_probs=16.0
Q ss_pred cCCCEEEEecCCChhHHHH
Q 035988 105 SGRDVLVIMAAGGGKSLCY 123 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~ 123 (692)
.|+..++.||.|+|||...
T Consensus 168 kGQR~lIvgppGvGKTTLa 186 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLL 186 (416)
T ss_pred cCceEEEeCCCCCChhHHH
Confidence 4788999999999999643
No 406
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.27 E-value=2.7 Score=46.59 Aligned_cols=48 Identities=21% Similarity=0.203 Sum_probs=28.4
Q ss_pred CCceEEEEeCcccccccCC---CchHHHHH-HHHHHh-hCCCCCEEEEecccc
Q 035988 211 GRLSLISIDEAHCCSQWGH---DFRPDYKN-LGILKT-QFPDVPMMALTATAT 258 (692)
Q Consensus 211 ~~l~~iVIDEaH~l~~~g~---~fr~~~~~-l~~l~~-~~~~~~~i~lSAT~~ 258 (692)
+.++++|||+..++.+|.. -|.+.+.+ |..+.+ ..|.-..++.-+|.+
T Consensus 597 S~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS 649 (744)
T KOG0741|consen 597 SPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTS 649 (744)
T ss_pred CcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEeccc
Confidence 4689999999999999853 45554443 223333 334333444444444
No 407
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.20 E-value=4.4 Score=47.08 Aligned_cols=19 Identities=21% Similarity=0.253 Sum_probs=15.4
Q ss_pred CCEEEEecCCChhHHHHHH
Q 035988 107 RDVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~l 125 (692)
..+|+.||.|+|||..+..
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~ 57 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARI 57 (620)
T ss_pred ceEEEECCCCCChHHHHHH
Confidence 3479999999999986654
No 408
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=89.18 E-value=2.8 Score=41.93 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=20.8
Q ss_pred CCCEEEEecCCChhHHHH-HHHH--HhcCCeEEEEc
Q 035988 106 GRDVLVIMAAGGGKSLCY-QLPA--VLREGIALVVS 138 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~-~lpa--l~~~~~~lvi~ 138 (692)
|.-+++.+|+|+|||... ++.. +..+.+++++.
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 456899999999998543 3321 12345555554
No 409
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=89.15 E-value=1.3 Score=47.47 Aligned_cols=58 Identities=14% Similarity=0.106 Sum_probs=32.6
Q ss_pred HHHHHHcC-----CCEEEEecCCChhHH-HHHHHHHh------c--CCeEEEEcccHHH-HHHHHHHHHHcCC
Q 035988 99 IINAVLSG-----RDVLVIMAAGGGKSL-CYQLPAVL------R--EGIALVVSPLLSL-IQDQVMCLAALGI 156 (692)
Q Consensus 99 ai~~il~g-----~dviv~apTGsGKTl-~~~lpal~------~--~~~~lvi~Pt~~L-~~q~~~~l~~~gi 156 (692)
.++.++.| .-+.+.+|+|+|||. |.++..-. . ++++++|..--.+ ..+..+....+|+
T Consensus 114 ~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~ 186 (344)
T PLN03187 114 ALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGM 186 (344)
T ss_pred hHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCC
Confidence 45556653 457899999999994 44442211 1 2578887764332 2333333444553
No 410
>PRK14701 reverse gyrase; Provisional
Probab=89.14 E-value=2 Score=55.10 Aligned_cols=61 Identities=13% Similarity=0.261 Sum_probs=54.8
Q ss_pred CCCceEEEEeccchHHHHHHHHHHC------CCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccc
Q 035988 314 NSESGIVYCFSRKECEQVAQELRQR------GISADYYHADMDINAREKVHMRWSKNKLQVIVGTVA 374 (692)
Q Consensus 314 ~~~~~IIf~~s~~~~e~l~~~L~~~------g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~ 374 (692)
.+.+++|.++|+.-+.++++.|+.. ++.+..+||+++..++....+.+.+|+.+|||+|+.
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 5678999999999999999999873 567789999999999999999999999999999985
No 411
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=89.11 E-value=2 Score=49.12 Aligned_cols=76 Identities=16% Similarity=0.225 Sum_probs=65.8
Q ss_pred CCCceEEEEeccc----hHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccc-cccccCCCCccEEE
Q 035988 314 NSESGIVYCFSRK----ECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVA-FGMGINKPDVRFVI 388 (692)
Q Consensus 314 ~~~~~IIf~~s~~----~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~-~~~GIDip~v~~VI 388 (692)
.|.++...++|-= +.+.+.++|...|+.+.++.|.+..+.|..+++...+|+++++|.|-+ +...+++.+.-+||
T Consensus 310 ~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVI 389 (677)
T COG1200 310 AGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVI 389 (677)
T ss_pred cCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEEE
Confidence 7889999999954 455556666667999999999999999999999999999999999987 57789999988888
Q ss_pred E
Q 035988 389 H 389 (692)
Q Consensus 389 ~ 389 (692)
.
T Consensus 390 i 390 (677)
T COG1200 390 I 390 (677)
T ss_pred E
Confidence 4
No 412
>CHL00095 clpC Clp protease ATP binding subunit
Probab=89.06 E-value=2.9 Score=50.45 Aligned_cols=31 Identities=32% Similarity=0.348 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHc-------C-----C---CEEEEecCCChhHHHHH
Q 035988 94 ANQQEIINAVLS-------G-----R---DVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 94 ~~Q~~ai~~il~-------g-----~---dviv~apTGsGKTl~~~ 124 (692)
.+|.+|+..+.. | + .+++.+|||+|||..+-
T Consensus 512 ~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~ 557 (821)
T CHL00095 512 IGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTK 557 (821)
T ss_pred cChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHH
Confidence 478888877642 1 1 26899999999997553
No 413
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=88.97 E-value=5.4 Score=47.89 Aligned_cols=20 Identities=20% Similarity=0.179 Sum_probs=16.1
Q ss_pred CCCEEEEecCCChhHHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~l 125 (692)
+..+++.+|+|+|||..+..
T Consensus 347 ~~~lll~GppG~GKT~lAk~ 366 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGKS 366 (775)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 34689999999999986543
No 414
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=88.95 E-value=0.72 Score=48.16 Aligned_cols=117 Identities=16% Similarity=0.169 Sum_probs=61.4
Q ss_pred HHHHHHcC----CCEEEEecCCChhHH---HHHHHHHhcCCeEEEEc---ccHHHHHHHHHHHHHcCCCEEEEecCCChh
Q 035988 99 IINAVLSG----RDVLVIMAAGGGKSL---CYQLPAVLREGIALVVS---PLLSLIQDQVMCLAALGIPAHMLTSTTSKE 168 (692)
Q Consensus 99 ai~~il~g----~dviv~apTGsGKTl---~~~lpal~~~~~~lvi~---Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~ 168 (692)
+++.++.| .=.++.+|||+|||. -|.+-....+-.+|+-+ |..-|+......+..+.... ...
T Consensus 262 vLNk~LkGhR~GElTvlTGpTGsGKTTFlsEYsLDL~~QGVnTLwgSFEi~n~rla~~mL~Qyagyrl~d-------rl~ 334 (514)
T KOG2373|consen 262 VLNKYLKGHRPGELTVLTGPTGSGKTTFLSEYSLDLFTQGVNTLWGSFEIPNKRLAHWMLVQYAGYRLLD-------RLN 334 (514)
T ss_pred HHHHHhccCCCCceEEEecCCCCCceeEehHhhHHHHhhhhhheeeeeecchHHHHHHHHHHHccCchHh-------hhh
Confidence 34444544 338999999999994 25565556666666643 66667666554443331000 000
Q ss_pred HHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccc
Q 035988 169 DEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQ 226 (692)
Q Consensus 169 ~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~ 226 (692)
..+...+... .....++|.+.=......++.+.......++..||||..+-|..
T Consensus 335 ~y~HWadrFE----rlplyfmtfhgqq~~~~vi~~i~ha~yV~di~HViIDNLQFmmg 388 (514)
T KOG2373|consen 335 SYKHWADRFE----RLPLYFMTFHGQQFMEKVINEIAHAIYVEDIQHVIIDNLQFMMG 388 (514)
T ss_pred hhhHHHHHHh----ccchHhhhhcccchHHHHHHHHHHHHHHHhhhhhhhhhHHHHhc
Confidence 0011111111 23444555442222223444555555556788899998887643
No 415
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.94 E-value=0.31 Score=51.70 Aligned_cols=17 Identities=35% Similarity=0.571 Sum_probs=15.1
Q ss_pred CCEEEEecCCChhHHHH
Q 035988 107 RDVLVIMAAGGGKSLCY 123 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~ 123 (692)
+.+++++|+|+|||+.+
T Consensus 246 kgvLm~GPPGTGKTlLA 262 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLA 262 (491)
T ss_pred ceeeeeCCCCCcHHHHH
Confidence 67999999999999944
No 416
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=88.89 E-value=2.1 Score=46.02 Aligned_cols=17 Identities=24% Similarity=0.198 Sum_probs=14.2
Q ss_pred CEEEEecCCChhHHHHH
Q 035988 108 DVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 108 dviv~apTGsGKTl~~~ 124 (692)
..++.||+|+|||....
T Consensus 38 ~~Ll~G~~G~GKt~~a~ 54 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIAR 54 (355)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997653
No 417
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=88.87 E-value=2.1 Score=43.99 Aligned_cols=107 Identities=17% Similarity=0.309 Sum_probs=53.6
Q ss_pred HHHHHHHcC-----CCEEEEecCCChhH-HHHHHHHHh--------cCCeEEEEcccHHHHHHHH-HHHHHcCCCEEEEe
Q 035988 98 EIINAVLSG-----RDVLVIMAAGGGKS-LCYQLPAVL--------REGIALVVSPLLSLIQDQV-MCLAALGIPAHMLT 162 (692)
Q Consensus 98 ~ai~~il~g-----~dviv~apTGsGKT-l~~~lpal~--------~~~~~lvi~Pt~~L~~q~~-~~l~~~gi~~~~~~ 162 (692)
..++.+|.| .-.=+++|.|+||| +|.++.+-. .++.+++|.-....-.+-. +.+++++.
T Consensus 25 ~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~------ 98 (256)
T PF08423_consen 25 KSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGL------ 98 (256)
T ss_dssp HHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS------
T ss_pred HHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhcccc------
Confidence 466666654 22449999999999 555553321 1467888765433322111 12223321
Q ss_pred cCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCccccc
Q 035988 163 STTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCS 225 (692)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~ 225 (692)
.. ....+ +|.|..+-.+......+..+.....-.++++||||-+-.+.
T Consensus 99 ---~~---~~~l~---------~I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaalf 146 (256)
T PF08423_consen 99 ---DP---EEILD---------NIFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSIAALF 146 (256)
T ss_dssp ----H---HHHHH---------TEEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETSSHHH
T ss_pred ---cc---chhhh---------ceeeeecCCHHHHHHHHHHHHhhccccceEEEEecchHHHH
Confidence 11 11221 23333322222222333444443344689999999987763
No 418
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=88.71 E-value=3.7 Score=43.49 Aligned_cols=17 Identities=35% Similarity=0.501 Sum_probs=15.5
Q ss_pred CCEEEEecCCChhHHHH
Q 035988 107 RDVLVIMAAGGGKSLCY 123 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~ 123 (692)
+.+++.+|+|+|||+.+
T Consensus 186 KGVLLYGPPGTGKTLLA 202 (406)
T COG1222 186 KGVLLYGPPGTGKTLLA 202 (406)
T ss_pred CceEeeCCCCCcHHHHH
Confidence 67999999999999965
No 419
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=88.69 E-value=3.2 Score=45.60 Aligned_cols=130 Identities=13% Similarity=0.031 Sum_probs=71.9
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHH-hc----CCeEEEEcccHHHHHHHHHHHHHc----------
Q 035988 90 PAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAV-LR----EGIALVVSPLLSLIQDQVMCLAAL---------- 154 (692)
Q Consensus 90 ~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal-~~----~~~~lvi~Pt~~L~~q~~~~l~~~---------- 154 (692)
-.|-..|.++.-..-.|.- -+.+-.|||||....+.+- ++ .-+++|..-|+.|..+.-....++
T Consensus 161 anfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~lh~knPd~~I~~Tfftk~L~s~~r~lv~~F~f~~~e~~pd 239 (660)
T COG3972 161 ANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAELHSKNPDSRIAFTFFTKILASTMRTLVPEFFFMRVEKQPD 239 (660)
T ss_pred hcccchhheeeeecCCchh-hhhcccCCCchhHHHHHHHHHhcCCCCceEEEEeehHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 3455677776444444544 5677889999986554332 22 357888888999988877666554
Q ss_pred -C-CCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccc
Q 035988 155 -G-IPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCC 224 (692)
Q Consensus 155 -g-i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l 224 (692)
| +-+..-.|+.+.......+..... -..+-++-.+--. .....+.+....+..-+++|.|||++-.
T Consensus 240 W~~~l~~h~wgG~t~~g~y~~~~~~~~---~~~~~fsg~g~~F-~~aC~eli~~~~~~~~yD~ilIDE~QDF 307 (660)
T COG3972 240 WGTKLFCHNWGGLTKEGFYGMYRYICH---YYEIPFSGFGNGF-DAACKELIADINNKKAYDYILIDESQDF 307 (660)
T ss_pred ccceEEEeccCCCCCCcchHHHHHHhc---ccccccCCCCcch-HHHHHHHHHhhhccccccEEEecccccC
Confidence 2 122222333443333333332211 2334343222111 1123344555556678999999999863
No 420
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=88.54 E-value=0.93 Score=48.40 Aligned_cols=49 Identities=12% Similarity=0.091 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhcccCCCcccCHHHHHHHHH-HHHHcCcc
Q 035988 479 AGHAQCIISLLQDIQDNNQRLTMLQLVDKMKIKLKEIDSDLKREEIEQLVL-QLIIDRVL 537 (692)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~l~~~~~l 537 (692)
....+..++++... -.++.+++..+...+ | .+...++..++ +|+..|++
T Consensus 258 ~~~~~~~l~~~~~~-~~~~~~~~~~~a~~l-g--------~~~~~~~~~~e~~Li~~~li 307 (328)
T PRK00080 258 DEMDRKYLRTIIEK-FGGGPVGLDTLAAAL-G--------EERDTIEDVYEPYLIQQGFI 307 (328)
T ss_pred CHHHHHHHHHHHHH-cCCCceeHHHHHHHH-C--------CCcchHHHHhhHHHHHcCCc
Confidence 34455555533322 124578888877665 2 23456777888 99999998
No 421
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=88.52 E-value=1.1 Score=56.45 Aligned_cols=62 Identities=23% Similarity=0.309 Sum_probs=48.2
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHH---HHHHhcC---CeEEEEcccHHHHHHHHHHHHHc
Q 035988 91 AYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQ---LPAVLRE---GIALVVSPLLSLIQDQVMCLAAL 154 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~---lpal~~~---~~~lvi~Pt~~L~~q~~~~l~~~ 154 (692)
++|+-|.+||.. .+++++|.|.-|||||.+.. +-.+..+ ..+++|+=|+..+.++..++++.
T Consensus 1 ~~t~~Q~~ai~~--~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~ 68 (1232)
T TIGR02785 1 QWTDEQWQAIYT--RGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEA 68 (1232)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHH
Confidence 368999999984 68899999999999998653 2223222 46899999999998877777653
No 422
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=88.46 E-value=0.75 Score=48.80 Aligned_cols=52 Identities=23% Similarity=0.286 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHH-HcCCCEEEEecCCChhHHHHH--HHHH---hcCCeEEEEcccHHH
Q 035988 92 YRANQQEIINAV-LSGRDVLVIMAAGGGKSLCYQ--LPAV---LREGIALVVSPLLSL 143 (692)
Q Consensus 92 ~r~~Q~~ai~~i-l~g~dviv~apTGsGKTl~~~--lpal---~~~~~~lvi~Pt~~L 143 (692)
+.+.|.+.+..+ ..+++++++++||||||.... +..+ ....++++|-.+.+|
T Consensus 133 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 133 MTAAQREAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 667888877654 467889999999999995432 1111 123466666666665
No 423
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=88.35 E-value=0.61 Score=53.47 Aligned_cols=169 Identities=21% Similarity=0.197 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHcCCC----------EEEEecCCChhH---HHHHHHHHhcC-CeEEEEcccHHHHHHHHHHHHHc--
Q 035988 91 AYRANQQEIINAVLSGRD----------VLVIMAAGGGKS---LCYQLPAVLRE-GIALVVSPLLSLIQDQVMCLAAL-- 154 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~g~d----------viv~apTGsGKT---l~~~lpal~~~-~~~lvi~Pt~~L~~q~~~~l~~~-- 154 (692)
.+...|.++|--+.+..+ .++--..|-||- .+.++--.+++ +++|+++-+..|--|..+.|+..
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGRKrAlW~SVSsDLKfDAERDL~DigA 343 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGRKRALWFSVSSDLKFDAERDLRDIGA 343 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcccceeEEEEeccccccchhhchhhcCC
Q ss_pred -CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhch---------HHHHHHHHhhhhcCCceEEEEeCccc-
Q 035988 155 -GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKS---------KRFMSKLEKCHHAGRLSLISIDEAHC- 223 (692)
Q Consensus 155 -gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~---------~~~~~~l~~~~~~~~l~~iVIDEaH~- 223 (692)
+|.+..++--....-..........| ++++|+-.|.-. .+|...++.. --.--++||+||||.
T Consensus 344 ~~I~V~alnK~KYakIss~en~n~krG-----ViFaTYtaLIGEs~~~~~kyrtR~rQllqW~-Ge~feGvIvfDECHkA 417 (1300)
T KOG1513|consen 344 TGIAVHALNKFKYAKISSKENTNTKRG-----VIFATYTALIGESQGKGGKYRTRFRQLLQWC-GEDFEGVIVFDECHKA 417 (1300)
T ss_pred CCccceehhhcccccccccccCCccce-----eEEEeeHhhhhhccccCchHHHHHHHHHHHh-hhccceeEEehhhhhh
Q ss_pred ---ccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHH
Q 035988 224 ---CSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDL 265 (692)
Q Consensus 224 ---l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i 265 (692)
..--|..-...=..+..|.+.+|+..++.-|||-..+-++.+
T Consensus 418 KNL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATGAsEPrNMa 462 (1300)
T KOG1513|consen 418 KNLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATGASEPRNMA 462 (1300)
T ss_pred cccccccCCCcCcccHhHHHHHHhCCCceEEEeeccCCCCcchhh
No 424
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.26 E-value=3.4 Score=46.79 Aligned_cols=17 Identities=29% Similarity=0.266 Sum_probs=14.3
Q ss_pred EEEEecCCChhHHHHHH
Q 035988 109 VLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 109 viv~apTGsGKTl~~~l 125 (692)
.++.+|+|+|||.+...
T Consensus 39 ~Lf~GppGtGKTTlA~~ 55 (504)
T PRK14963 39 YLFSGPRGVGKTTTARL 55 (504)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 49999999999987643
No 425
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=88.22 E-value=0.4 Score=46.05 Aligned_cols=44 Identities=11% Similarity=0.053 Sum_probs=28.6
Q ss_pred CCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccC
Q 035988 182 GELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWG 228 (692)
Q Consensus 182 ~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g 228 (692)
..++|||+++..|.+.. ....+. . ....-.+|||||||.+.+..
T Consensus 118 ~~adivi~~y~yl~~~~-~~~~~~-~-~~~~~~ivI~DEAHNL~~~~ 161 (174)
T PF06733_consen 118 KNADIVICNYNYLFDPS-IRKSLF-G-IDLKDNIVIFDEAHNLEDAA 161 (174)
T ss_dssp GG-SEEEEETHHHHSHH-HHHHHC-T---CCCEEEEETTGGGCGGGC
T ss_pred ccCCEEEeCHHHHhhHH-HHhhhc-c-ccccCcEEEEecccchHHHH
Confidence 37899999999988653 222221 1 11345789999999987643
No 426
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=88.21 E-value=0.17 Score=58.72 Aligned_cols=118 Identities=16% Similarity=0.099 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHhCCCC-CceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCC-Cc-EEEeccccc
Q 035988 300 VIDEIAKYIQESYPNS-ESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNK-LQ-VIVGTVAFG 376 (692)
Q Consensus 300 ~~~~l~~~l~~~~~~~-~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~-~~-ILVaT~~~~ 376 (692)
++..+..++...-... .+++||+.-..-+..+.-.|...++....|-|.|+...|...+..|..+. .. .+++..+.+
T Consensus 523 ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~ 602 (674)
T KOG1001|consen 523 KIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGK 602 (674)
T ss_pred hhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhh
Confidence 3445555554322122 48999999999999999999988999999999999999999999999654 22 457889999
Q ss_pred cccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEe
Q 035988 377 MGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLL 417 (692)
Q Consensus 377 ~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~ 417 (692)
.|+++....+|+..|+-+++..--|.+-|+.|.|+.-.+.+
T Consensus 603 ~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 603 VGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred hhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeee
Confidence 99999999999999999999999999999999998765544
No 427
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=88.19 E-value=4.9 Score=43.57 Aligned_cols=44 Identities=16% Similarity=0.173 Sum_probs=25.3
Q ss_pred hcCCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccc
Q 035988 209 HAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATAT 258 (692)
Q Consensus 209 ~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~ 258 (692)
......++||||+|.+.. .....|....+..|...++++++.-+
T Consensus 138 ~~~~~kVviIDead~m~~------~aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 138 AEGGWRVVIVDTADEMNA------NAANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred ccCCCEEEEEechHhcCH------HHHHHHHHHHhcCCCCeEEEEEECCc
Confidence 345678999999999753 22233334445555545544444333
No 428
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=88.17 E-value=1.8 Score=49.13 Aligned_cols=16 Identities=25% Similarity=0.241 Sum_probs=13.8
Q ss_pred EEEEecCCChhHHHHH
Q 035988 109 VLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 109 viv~apTGsGKTl~~~ 124 (692)
.++.||.|+|||.++.
T Consensus 39 yLf~Gp~G~GKTt~Ar 54 (535)
T PRK08451 39 YLFSGLRGSGKTSSAR 54 (535)
T ss_pred EEEECCCCCcHHHHHH
Confidence 5899999999997664
No 429
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=88.15 E-value=7.8 Score=40.79 Aligned_cols=17 Identities=24% Similarity=0.292 Sum_probs=14.7
Q ss_pred CEEEEecCCChhHHHHH
Q 035988 108 DVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 108 dviv~apTGsGKTl~~~ 124 (692)
.+++.||+|+|||.+..
T Consensus 40 ~~ll~G~~G~GKt~~~~ 56 (319)
T PRK00440 40 HLLFAGPPGTGKTTAAL 56 (319)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 48999999999997654
No 430
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.10 E-value=4.3 Score=46.86 Aligned_cols=44 Identities=20% Similarity=0.219 Sum_probs=25.1
Q ss_pred cCCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccch
Q 035988 210 AGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQ 259 (692)
Q Consensus 210 ~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~ 259 (692)
..+..++||||+|.+.... ...|.......|..-++.|.+|-+.
T Consensus 117 ~~~~KVvIIdev~~Lt~~a------~naLLk~LEepp~~~~fIl~t~~~~ 160 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNA------FNALLKTLEEPPPHVKFIFATTEPH 160 (576)
T ss_pred cCCceEEEEEChhhCCHHH------HHHHHHHHHcCCCCeEEEEEeCChh
Confidence 3578899999999986422 2333344445544333344445433
No 431
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=87.86 E-value=4.7 Score=41.14 Aligned_cols=19 Identities=21% Similarity=0.398 Sum_probs=16.5
Q ss_pred cCCCEEEEecCCChhHHHH
Q 035988 105 SGRDVLVIMAAGGGKSLCY 123 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~ 123 (692)
.|+.+++.+|.|+|||...
T Consensus 15 ~Gqr~~I~G~~G~GKTTLl 33 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLL 33 (249)
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5888999999999999643
No 432
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=87.82 E-value=0.89 Score=46.88 Aligned_cols=40 Identities=23% Similarity=0.199 Sum_probs=26.8
Q ss_pred HHHHHHHcCCCEEEEecCCChhHHHHHHHHHhcCCeEEEE
Q 035988 98 EIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVV 137 (692)
Q Consensus 98 ~ai~~il~g~dviv~apTGsGKTl~~~lpal~~~~~~lvi 137 (692)
+++..+..|+++++.+|+|+|||.+...-+-..+...+.+
T Consensus 13 ~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i 52 (262)
T TIGR02640 13 RALRYLKSGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLI 52 (262)
T ss_pred HHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 4555566789999999999999986654332334333333
No 433
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=87.80 E-value=4.4 Score=39.28 Aligned_cols=25 Identities=12% Similarity=0.205 Sum_probs=16.9
Q ss_pred HHHHhhhhcCCceEEEEeCcccccc
Q 035988 202 SKLEKCHHAGRLSLISIDEAHCCSQ 226 (692)
Q Consensus 202 ~~l~~~~~~~~l~~iVIDEaH~l~~ 226 (692)
+.+..........++||||+|.+..
T Consensus 86 ~~~~~~~~~~~~kviiide~~~l~~ 110 (188)
T TIGR00678 86 EFLSRTPQESGRRVVIIEDAERMNE 110 (188)
T ss_pred HHHccCcccCCeEEEEEechhhhCH
Confidence 3333333346778999999999753
No 434
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=87.66 E-value=1.3 Score=46.50 Aligned_cols=53 Identities=17% Similarity=0.370 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHH-cCCCEEEEecCCChhHHHH--HHHHHhc---CCeEEEEcccHHH
Q 035988 91 AYRANQQEIINAVL-SGRDVLVIMAAGGGKSLCY--QLPAVLR---EGIALVVSPLLSL 143 (692)
Q Consensus 91 ~~r~~Q~~ai~~il-~g~dviv~apTGsGKTl~~--~lpal~~---~~~~lvi~Pt~~L 143 (692)
.+.+.|.+.+..++ .++++++++|||||||... ++-.+.. ..+++++=...+|
T Consensus 116 ~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 116 IMTAAQRDVLREAVLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhh
Confidence 35666666665544 5678999999999999643 2222211 3567777777666
No 435
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=87.64 E-value=0.76 Score=49.23 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=27.3
Q ss_pred HHcCCCEEEEecCCChhHHHH--HHHHHhcCCeEEEEcccHHHH
Q 035988 103 VLSGRDVLVIMAAGGGKSLCY--QLPAVLREGIALVVSPLLSLI 144 (692)
Q Consensus 103 il~g~dviv~apTGsGKTl~~--~lpal~~~~~~lvi~Pt~~L~ 144 (692)
+..++++++++|||||||... ++-.+-...+++.|=++.+|.
T Consensus 159 v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~ 202 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELV 202 (344)
T ss_pred HHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCcccc
Confidence 446789999999999999642 111122234666666776663
No 436
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=87.64 E-value=4.3 Score=42.15 Aligned_cols=33 Identities=21% Similarity=0.342 Sum_probs=23.5
Q ss_pred EEEEecCCChhHHHHHHHHHhc-------CCeEEEEcccHHH
Q 035988 109 VLVIMAAGGGKSLCYQLPAVLR-------EGIALVVSPLLSL 143 (692)
Q Consensus 109 viv~apTGsGKTl~~~lpal~~-------~~~~lvi~Pt~~L 143 (692)
.+|.+|||+|||- ++-.++. +..+++|+|....
T Consensus 90 ~~VYGPTG~GKSq--LlRNLis~~lI~P~PETVfFItP~~~m 129 (369)
T PF02456_consen 90 GVVYGPTGSGKSQ--LLRNLISCQLIQPPPETVFFITPQKDM 129 (369)
T ss_pred EEEECCCCCCHHH--HHHHhhhcCcccCCCCceEEECCCCCC
Confidence 6789999999995 2333322 3578999998654
No 437
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=87.50 E-value=14 Score=44.73 Aligned_cols=30 Identities=23% Similarity=0.372 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHc-------C-----C---CEEEEecCCChhHHHH
Q 035988 94 ANQQEIINAVLS-------G-----R---DVLVIMAAGGGKSLCY 123 (692)
Q Consensus 94 ~~Q~~ai~~il~-------g-----~---dviv~apTGsGKTl~~ 123 (692)
-+|.+|+..+.. | + .+++.+|||+|||...
T Consensus 569 ~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 569 IGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETA 613 (852)
T ss_pred cChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHH
Confidence 467777766542 1 1 2799999999999765
No 438
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=87.41 E-value=5 Score=46.98 Aligned_cols=80 Identities=23% Similarity=0.230 Sum_probs=67.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhc
Q 035988 131 EGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHA 210 (692)
Q Consensus 131 ~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~ 210 (692)
+.++||.++++.-++...+.|.+.|+++..++++....++..+...+..+ ..+|+|+|- .+ ...+.+
T Consensus 442 g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G--~i~VLV~t~-~L----------~rGfDi 508 (655)
T TIGR00631 442 NERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLG--EFDVLVGIN-LL----------REGLDL 508 (655)
T ss_pred CCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcC--CceEEEEcC-hh----------cCCeee
Confidence 56899999999999999999999999999999999888888888888877 899999883 22 334456
Q ss_pred CCceEEEEeCccc
Q 035988 211 GRLSLISIDEAHC 223 (692)
Q Consensus 211 ~~l~~iVIDEaH~ 223 (692)
..++++|+-+++.
T Consensus 509 P~v~lVvi~Dadi 521 (655)
T TIGR00631 509 PEVSLVAILDADK 521 (655)
T ss_pred CCCcEEEEeCccc
Confidence 7889999888876
No 439
>PRK08506 replicative DNA helicase; Provisional
Probab=87.39 E-value=4.1 Score=45.77 Aligned_cols=117 Identities=15% Similarity=0.125 Sum_probs=56.3
Q ss_pred CCCEEEEecCCChhHHHHHHH---HHhcCCeEEEEcccHHHHHHHHHHHHH--cCCCEEEE-ecCCChhHHHHHHHHHHh
Q 035988 106 GRDVLVIMAAGGGKSLCYQLP---AVLREGIALVVSPLLSLIQDQVMCLAA--LGIPAHML-TSTTSKEDEKFIYKALEK 179 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~lp---al~~~~~~lvi~Pt~~L~~q~~~~l~~--~gi~~~~~-~~~~~~~~~~~~~~~l~~ 179 (692)
|.=+++.|.||.|||...+-- +...+..+++++.= .=..|...++-. .|++...+ .+..+..+...+......
T Consensus 192 G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlE-Ms~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a~~~ 270 (472)
T PRK08506 192 GDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLE-MPAEQLMLRMLSAKTSIPLQNLRTGDLDDDEWERLSDACDE 270 (472)
T ss_pred CceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCc-CCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHH
Confidence 344788999999999654321 22334566666432 334455555433 24443222 344444444333322221
Q ss_pred cCCCccEEEe-ChhhhhchHHHHHHHHhhhh-cCCceEEEEeCcccccc
Q 035988 180 GEGELKMLYV-TPEKISKSKRFMSKLEKCHH-AGRLSLISIDEAHCCSQ 226 (692)
Q Consensus 180 ~~~~~~Ili~-Tpe~l~~~~~~~~~l~~~~~-~~~l~~iVIDEaH~l~~ 226 (692)
.. ...+.|- +|. + +...+......... ...+++||||=.+.+..
T Consensus 271 l~-~~~l~I~d~~~-~-ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~ 316 (472)
T PRK08506 271 LS-KKKLFVYDSGY-V-NIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSG 316 (472)
T ss_pred HH-cCCeEEECCCC-C-CHHHHHHHHHHHHHhCCCCCEEEEcChhhccC
Confidence 11 2234443 322 1 11122222222111 13589999999998863
No 440
>PRK10865 protein disaggregation chaperone; Provisional
Probab=87.33 E-value=3.9 Score=49.51 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=15.3
Q ss_pred CCEEEEecCCChhHHHHH
Q 035988 107 RDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~ 124 (692)
.+.++++|+|.|||....
T Consensus 200 ~n~lL~G~pGvGKT~l~~ 217 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVE 217 (857)
T ss_pred CceEEECCCCCCHHHHHH
Confidence 479999999999998653
No 441
>PRK08840 replicative DNA helicase; Provisional
Probab=87.30 E-value=6.4 Score=44.11 Aligned_cols=118 Identities=16% Similarity=0.095 Sum_probs=55.8
Q ss_pred CCCEEEEecCCChhHHHHHHH----HHhcCCeEEEEcccHHHHHHHHHHHHHc--CCCEEE-EecCCChhHHHHHHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQLP----AVLREGIALVVSPLLSLIQDQVMCLAAL--GIPAHM-LTSTTSKEDEKFIYKALE 178 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~lp----al~~~~~~lvi~Pt~~L~~q~~~~l~~~--gi~~~~-~~~~~~~~~~~~~~~~l~ 178 (692)
|.=+++.|.||.|||.-.+-- +...+..+++++.= -=..|...++-.. ++.... ..+..+..+...+.....
T Consensus 217 g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlE-Ms~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a~~ 295 (464)
T PRK08840 217 SDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLE-MPAEQLMMRMLASLSRVDQTKIRTGQLDDEDWARISSTMG 295 (464)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEecc-CCHHHHHHHHHHhhCCCCHHHHhcCCCCHHHHHHHHHHHH
Confidence 444788999999999754311 22234566666533 2244444444332 443322 234455555444333222
Q ss_pred hcCCCccEEEe-ChhhhhchHHHHHHHHhhhhc-CCceEEEEeCcccccc
Q 035988 179 KGEGELKMLYV-TPEKISKSKRFMSKLEKCHHA-GRLSLISIDEAHCCSQ 226 (692)
Q Consensus 179 ~~~~~~~Ili~-Tpe~l~~~~~~~~~l~~~~~~-~~l~~iVIDEaH~l~~ 226 (692)
.-.....+.|- +|. +. .........+.... ..+++||||=.|.+..
T Consensus 296 ~l~~~~~l~I~d~~~-~t-i~~i~~~~r~~~~~~~~~~lvvIDYLql~~~ 343 (464)
T PRK08840 296 ILMEKKNMYIDDSSG-LT-PTEVRSRARRIAREHGGLSMIMVDYLQLMRV 343 (464)
T ss_pred HHHhcCCEEEECCCC-CC-HHHHHHHHHHHHHhcCCCCEEEEccHHhcCC
Confidence 11002233332 332 11 11222222222111 3589999999998853
No 442
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.28 E-value=3.3 Score=48.11 Aligned_cols=44 Identities=23% Similarity=0.312 Sum_probs=28.2
Q ss_pred hcCCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccc
Q 035988 209 HAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATAT 258 (692)
Q Consensus 209 ~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~ 258 (692)
......++||||||.++.. ....|.......|..-++.|++|-.
T Consensus 118 ~~~~~KVvIIdea~~Ls~~------a~naLLK~LEepp~~tifIL~tt~~ 161 (614)
T PRK14971 118 QIGKYKIYIIDEVHMLSQA------AFNAFLKTLEEPPSYAIFILATTEK 161 (614)
T ss_pred ccCCcEEEEEECcccCCHH------HHHHHHHHHhCCCCCeEEEEEeCCc
Confidence 4467889999999998642 2334445555666655666666643
No 443
>CHL00176 ftsH cell division protein; Validated
Probab=87.18 E-value=8 Score=45.12 Aligned_cols=18 Identities=33% Similarity=0.571 Sum_probs=15.5
Q ss_pred CCEEEEecCCChhHHHHH
Q 035988 107 RDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~ 124 (692)
+.+++.+|+|+|||+..-
T Consensus 217 ~gVLL~GPpGTGKT~LAr 234 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAK 234 (638)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 569999999999998654
No 444
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=87.08 E-value=3 Score=45.47 Aligned_cols=15 Identities=20% Similarity=0.324 Sum_probs=13.6
Q ss_pred CCEEEEecCCChhHH
Q 035988 107 RDVLVIMAAGGGKSL 121 (692)
Q Consensus 107 ~dviv~apTGsGKTl 121 (692)
.-+++.||+|+|||-
T Consensus 114 nplfi~G~~GlGKTH 128 (408)
T COG0593 114 NPLFIYGGVGLGKTH 128 (408)
T ss_pred CcEEEECCCCCCHHH
Confidence 459999999999997
No 445
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=87.02 E-value=3.2 Score=41.67 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=15.2
Q ss_pred CCCEEEEecCCChhHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~ 124 (692)
|.-+.+.+|+|+|||...+
T Consensus 19 g~i~~i~G~~GsGKT~l~~ 37 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCH 37 (235)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568999999999996443
No 446
>PRK07004 replicative DNA helicase; Provisional
Probab=86.90 E-value=5.5 Score=44.60 Aligned_cols=117 Identities=21% Similarity=0.155 Sum_probs=55.9
Q ss_pred CCCEEEEecCCChhHHHHH-HH---HHhcCCeEEEEcccHHHHHHHHHHHHH--cCCCEEEE-ecCCChhHHHHHHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQ-LP---AVLREGIALVVSPLLSLIQDQVMCLAA--LGIPAHML-TSTTSKEDEKFIYKALE 178 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~-lp---al~~~~~~lvi~Pt~~L~~q~~~~l~~--~gi~~~~~-~~~~~~~~~~~~~~~l~ 178 (692)
|.=+++.|.||+|||...+ +. ++..+..+++++.= -=..|...++-. -+++...+ .|..+..+...+.....
T Consensus 213 g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlE-M~~~ql~~R~la~~~~v~~~~i~~g~l~~~e~~~~~~a~~ 291 (460)
T PRK07004 213 GELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSME-MPGTQLAMRMLGSVGRLDQHRMRTGRLTDEDWPKLTHAVQ 291 (460)
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCC-CCHHHHHHHHHHhhcCCCHHHHhcCCCCHHHHHHHHHHHH
Confidence 4457889999999997544 21 12235566666421 113333333322 13333222 34455555444333332
Q ss_pred hcCCCccEEEe-ChhhhhchHHHHHHHHhhhh-cCCceEEEEeCcccccc
Q 035988 179 KGEGELKMLYV-TPEKISKSKRFMSKLEKCHH-AGRLSLISIDEAHCCSQ 226 (692)
Q Consensus 179 ~~~~~~~Ili~-Tpe~l~~~~~~~~~l~~~~~-~~~l~~iVIDEaH~l~~ 226 (692)
.-. ...+.|. +|. +. ...+......... ...+++||||=.+.+..
T Consensus 292 ~l~-~~~l~I~d~~~-~~-~~~i~~~~r~l~~~~~~~~lviIDYLql~~~ 338 (460)
T PRK07004 292 KMS-EAQLFIDETGG-LN-PMELRSRARRLARQCGKLGLIIIDYLQLMSG 338 (460)
T ss_pred HHh-cCCEEEECCCC-CC-HHHHHHHHHHHHHhCCCCCEEEEChhhhccC
Confidence 221 3345553 332 11 1112222222111 13589999999998864
No 447
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.82 E-value=4 Score=45.91 Aligned_cols=88 Identities=13% Similarity=0.107 Sum_probs=67.6
Q ss_pred hHHHHHHHHHh---cCCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhh
Q 035988 119 KSLCYQLPAVL---REGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKIS 195 (692)
Q Consensus 119 KTl~~~lpal~---~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~ 195 (692)
+.+..++..+. .+..+||.++++.-+++....|++.|+++..++++.+..++..+.+.+..+ ..+|+|+|-- +
T Consensus 211 ~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g--~~~vLVaT~~-~- 286 (470)
T TIGR00614 211 KILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRD--EIQVVVATVA-F- 286 (470)
T ss_pred cHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcC--CCcEEEEech-h-
Confidence 44433444443 345679999999999999999999999999999999999999999988877 8999999953 2
Q ss_pred chHHHHHHHHhhhhcCCceEEEEe
Q 035988 196 KSKRFMSKLEKCHHAGRLSLISID 219 (692)
Q Consensus 196 ~~~~~~~~l~~~~~~~~l~~iVID 219 (692)
....+..++++||.-
T Consensus 287 ---------~~GID~p~V~~VI~~ 301 (470)
T TIGR00614 287 ---------GMGINKPDVRFVIHY 301 (470)
T ss_pred ---------hccCCcccceEEEEe
Confidence 123344567777743
No 448
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=86.77 E-value=21 Score=41.25 Aligned_cols=74 Identities=14% Similarity=0.148 Sum_probs=55.1
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHH--HHHHh---cCCeEEEEcccHHHHHHHHHHH
Q 035988 77 SRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQ--LPAVL---REGIALVVSPLLSLIQDQVMCL 151 (692)
Q Consensus 77 ~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~--lpal~---~~~~~lvi~Pt~~L~~q~~~~l 151 (692)
+.+.+.|+..|+.+.+. ..+-.....+-.++..|==.|||.... +..++ .+-.+++++|.+..++..++++
T Consensus 229 ~r~~~~lk~~Fdi~~~s----~~~~~~fkqk~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI 304 (738)
T PHA03368 229 ERVERFLRTVFNTPLFS----DAAVRHFRQRATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFEEI 304 (738)
T ss_pred HHHHHHHHHHcCCcccc----HHHHHHhhccceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHH
Confidence 45677788889987775 333344567888899999999996433 33222 4779999999999999998888
Q ss_pred HHc
Q 035988 152 AAL 154 (692)
Q Consensus 152 ~~~ 154 (692)
...
T Consensus 305 ~~~ 307 (738)
T PHA03368 305 GAR 307 (738)
T ss_pred HHH
Confidence 764
No 449
>PRK12608 transcription termination factor Rho; Provisional
Probab=86.61 E-value=4.7 Score=43.49 Aligned_cols=30 Identities=17% Similarity=0.351 Sum_probs=23.4
Q ss_pred HHHHHHHHHHH---cCCCEEEEecCCChhHHHH
Q 035988 94 ANQQEIINAVL---SGRDVLVIMAAGGGKSLCY 123 (692)
Q Consensus 94 ~~Q~~ai~~il---~g~dviv~apTGsGKTl~~ 123 (692)
+.-..+|+.+. .|+..++.||.|+|||...
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl 150 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLL 150 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHHH
Confidence 34455777766 5889999999999999754
No 450
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=86.55 E-value=3.7 Score=45.40 Aligned_cols=79 Identities=14% Similarity=0.071 Sum_probs=64.6
Q ss_pred EEecCCChhHHHHHHHHHhc--CCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEE
Q 035988 111 VIMAAGGGKSLCYQLPAVLR--EGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLY 188 (692)
Q Consensus 111 v~apTGsGKTl~~~lpal~~--~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili 188 (692)
+.+-+-.-| .=-+++++.. .+.+||.+.+..-+.-..+.|.+.|+++..++|+.+.+++...+..+..+ ..+|+|
T Consensus 496 v~m~~ed~k-~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~--t~dIlV 572 (673)
T KOG0333|consen 496 VEMVSEDEK-RKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREG--TGDILV 572 (673)
T ss_pred EEEecchHH-HHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhc--CCCEEE
Confidence 333444444 3334555544 47899999999999999999999999999999999999999999999987 889999
Q ss_pred eChh
Q 035988 189 VTPE 192 (692)
Q Consensus 189 ~Tpe 192 (692)
+|.-
T Consensus 573 aTDv 576 (673)
T KOG0333|consen 573 ATDV 576 (673)
T ss_pred Eecc
Confidence 9965
No 451
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=86.51 E-value=3.7 Score=43.37 Aligned_cols=42 Identities=19% Similarity=0.172 Sum_probs=26.2
Q ss_pred CCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccc
Q 035988 211 GRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATAT 258 (692)
Q Consensus 211 ~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~ 258 (692)
....+++||||+.|.. .....+.......|....+.|++.-+
T Consensus 108 ~~~kviiidead~mt~------~A~nallk~lEep~~~~~~il~~n~~ 149 (325)
T COG0470 108 GGYKVVIIDEADKLTE------DAANALLKTLEEPPKNTRFILITNDP 149 (325)
T ss_pred CCceEEEeCcHHHHhH------HHHHHHHHHhccCCCCeEEEEEcCCh
Confidence 5689999999999864 23334444555555544555555433
No 452
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=86.50 E-value=3.3 Score=45.45 Aligned_cols=127 Identities=17% Similarity=0.205 Sum_probs=64.3
Q ss_pred CEEEEecCCChhHHHHHHHHH----h--cCCeEEEEcccHH-H----HHHHHHHHHHcCCCEEEEecCCChhHHHHHHHH
Q 035988 108 DVLVIMAAGGGKSLCYQLPAV----L--REGIALVVSPLLS-L----IQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKA 176 (692)
Q Consensus 108 dviv~apTGsGKTl~~~lpal----~--~~~~~lvi~Pt~~-L----~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~ 176 (692)
-.++.++.|||||.+..+-++ . .+..++++-|+.. | ..+....+..+|+....-....+.. . .
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~~-i-----~ 76 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSME-I-----K 76 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCccE-E-----E
Confidence 367899999999976653332 3 4568888888866 3 2334444455665422211111000 0 0
Q ss_pred HHhcCCCccEEEeCh-hhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHH-HHHhhCCCCCEEEEe
Q 035988 177 LEKGEGELKMLYVTP-EKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLG-ILKTQFPDVPMMALT 254 (692)
Q Consensus 177 l~~~~~~~~Ili~Tp-e~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~-~l~~~~~~~~~i~lS 254 (692)
+.. .+..|++..- +.. .+......++++.+|||..+.+. .+..+. .++. ....+.+.+|
T Consensus 77 ~~~--~g~~i~f~g~~d~~----------~~ik~~~~~~~~~idEa~~~~~~------~~~~l~~rlr~-~~~~~~i~~t 137 (396)
T TIGR01547 77 ILN--TGKKFIFKGLNDKP----------NKLKSGAGIAIIWFEEASQLTFE------DIKELIPRLRE-TGGKKFIIFS 137 (396)
T ss_pred ecC--CCeEEEeecccCCh----------hHhhCcceeeeehhhhhhhcCHH------HHHHHHHHhhc-cCCccEEEEE
Confidence 000 0234554433 211 11112234799999999987531 222221 2222 1122247888
Q ss_pred cccch
Q 035988 255 ATATQ 259 (692)
Q Consensus 255 AT~~~ 259 (692)
.||..
T Consensus 138 ~NP~~ 142 (396)
T TIGR01547 138 SNPES 142 (396)
T ss_pred cCcCC
Confidence 88865
No 453
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=86.41 E-value=6.8 Score=45.24 Aligned_cols=17 Identities=24% Similarity=0.300 Sum_probs=14.0
Q ss_pred CCCEEEEecCCChhHHH
Q 035988 106 GRDVLVIMAAGGGKSLC 122 (692)
Q Consensus 106 g~dviv~apTGsGKTl~ 122 (692)
|.-+++++|+|.|||-.
T Consensus 350 GpILcLVGPPGVGKTSL 366 (782)
T COG0466 350 GPILCLVGPPGVGKTSL 366 (782)
T ss_pred CcEEEEECCCCCCchhH
Confidence 44588999999999963
No 454
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=86.34 E-value=3.6 Score=46.45 Aligned_cols=18 Identities=33% Similarity=0.492 Sum_probs=15.5
Q ss_pred CCEEEEecCCChhHHHHH
Q 035988 107 RDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~ 124 (692)
+.+++.+|+|+|||+...
T Consensus 217 ~GILLyGPPGTGKT~LAK 234 (512)
T TIGR03689 217 KGVLLYGPPGCGKTLIAK 234 (512)
T ss_pred cceEEECCCCCcHHHHHH
Confidence 569999999999998643
No 455
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=85.86 E-value=6.1 Score=39.43 Aligned_cols=51 Identities=20% Similarity=0.160 Sum_probs=34.4
Q ss_pred CCCEEEEecCCChhHH-HHHHH--HHhcCCeEEEEcccHHHHHHHHHHHHHcCCC
Q 035988 106 GRDVLVIMAAGGGKSL-CYQLP--AVLREGIALVVSPLLSLIQDQVMCLAALGIP 157 (692)
Q Consensus 106 g~dviv~apTGsGKTl-~~~lp--al~~~~~~lvi~Pt~~L~~q~~~~l~~~gi~ 157 (692)
|.-+++.+++|+|||. +.++. .+..+..+++++.- +-..+..+.+..+|..
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e-~~~~~l~~~~~~~~~~ 69 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE-EREERILGYAKSKGWD 69 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC-CCHHHHHHHHHHcCCC
Confidence 5668999999999985 44442 23456677776654 4466777777777643
No 456
>PTZ00110 helicase; Provisional
Probab=85.81 E-value=3.5 Score=47.35 Aligned_cols=60 Identities=13% Similarity=0.156 Sum_probs=55.4
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeCh
Q 035988 130 REGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTP 191 (692)
Q Consensus 130 ~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tp 191 (692)
.++++||.++++.-+....+.|+..|+++..++|+....++..++..+..+ ...|+|+|.
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G--~~~ILVaTd 435 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTG--KSPIMIATD 435 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcC--CCcEEEEcc
Confidence 457999999999999999999999999999999999999999999999887 889999995
No 457
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=85.63 E-value=5 Score=48.55 Aligned_cols=29 Identities=17% Similarity=0.323 Sum_probs=21.6
Q ss_pred HHHHHHHHHc------CCCEEEEecCCChhHHHHH
Q 035988 96 QQEIINAVLS------GRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 96 Q~~ai~~il~------g~dviv~apTGsGKTl~~~ 124 (692)
|...|..++. ..+.++++|.|+|||...-
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~ 226 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVE 226 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHH
Confidence 6666666542 3579999999999998653
No 458
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=85.57 E-value=2.5 Score=46.88 Aligned_cols=59 Identities=20% Similarity=0.233 Sum_probs=54.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeCh
Q 035988 131 EGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTP 191 (692)
Q Consensus 131 ~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tp 191 (692)
..++||.++++.-+......|...|+++..++|+....++..+.+.+..+ .++|+|+|.
T Consensus 255 ~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g--~~~vLVaTd 313 (423)
T PRK04837 255 PDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRG--DLDILVATD 313 (423)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcC--CCcEEEEec
Confidence 46899999999999999999999999999999999999999999999887 899999994
No 459
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=85.53 E-value=2.4 Score=48.87 Aligned_cols=76 Identities=13% Similarity=0.206 Sum_probs=63.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhc
Q 035988 131 EGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHA 210 (692)
Q Consensus 131 ~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~ 210 (692)
+..+||.++++..++...+.|...|+.+..++|+.+..++..++..+..+ ..+|+|+|.- + ....++
T Consensus 257 ~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G--~~~VLVaTdv-~----------arGIDi 323 (572)
T PRK04537 257 GARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKG--QLEILVATDV-A----------ARGLHI 323 (572)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcC--CCeEEEEehh-h----------hcCCCc
Confidence 46899999999999999999999999999999999999999999999887 8999999943 1 233345
Q ss_pred CCceEEEEe
Q 035988 211 GRLSLISID 219 (692)
Q Consensus 211 ~~l~~iVID 219 (692)
.+++++|.-
T Consensus 324 p~V~~VIny 332 (572)
T PRK04537 324 DGVKYVYNY 332 (572)
T ss_pred cCCCEEEEc
Confidence 566666643
No 460
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=85.36 E-value=1 Score=43.68 Aligned_cols=33 Identities=15% Similarity=0.315 Sum_probs=26.3
Q ss_pred CCCHHHHHHHHHHH-cCCCEEEEecCCChhHHHH
Q 035988 91 AYRANQQEIINAVL-SGRDVLVIMAAGGGKSLCY 123 (692)
Q Consensus 91 ~~r~~Q~~ai~~il-~g~dviv~apTGsGKTl~~ 123 (692)
.+.+.|.+.+...+ .|..+++.+|||+|||...
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 46777888777655 4778999999999999753
No 461
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=85.29 E-value=6.3 Score=43.24 Aligned_cols=49 Identities=14% Similarity=0.276 Sum_probs=35.0
Q ss_pred chHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035988 2 ETEEILQELENVEAEVRLVQEQIKQLVDRQDQLYERQSELKSLLEAFEA 50 (692)
Q Consensus 2 ~~~~~~~el~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (692)
+...+++.+.++..+...++.+.+.+....+.+..+...+++.++.+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (398)
T PTZ00454 16 TERDLYEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQS 64 (398)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4455666777777777777777777777777777777777777777653
No 462
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=85.24 E-value=3.6 Score=49.95 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=15.4
Q ss_pred CCEEEEecCCChhHHHHH
Q 035988 107 RDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~ 124 (692)
.+.++++|+|.|||....
T Consensus 195 ~n~lL~G~pGvGKT~l~~ 212 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVE 212 (852)
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 579999999999997553
No 463
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=85.19 E-value=1.1 Score=47.82 Aligned_cols=41 Identities=15% Similarity=0.204 Sum_probs=25.3
Q ss_pred HHcCCCEEEEecCCChhHHHH--HHHHHhcCCeEEEEcccHHH
Q 035988 103 VLSGRDVLVIMAAGGGKSLCY--QLPAVLREGIALVVSPLLSL 143 (692)
Q Consensus 103 il~g~dviv~apTGsGKTl~~--~lpal~~~~~~lvi~Pt~~L 143 (692)
+..+++++++++||||||... ++..+-...+++++=.+.+|
T Consensus 157 v~~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El 199 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREI 199 (332)
T ss_pred HHcCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCcc
Confidence 446889999999999999632 22222223455554444444
No 464
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=85.18 E-value=4.6 Score=45.65 Aligned_cols=19 Identities=32% Similarity=0.319 Sum_probs=16.1
Q ss_pred CCCEEEEecCCChhHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~ 124 (692)
-+.+|+++|+|+|||..+.
T Consensus 223 prGvLlHGPPGCGKT~lA~ 241 (802)
T KOG0733|consen 223 PRGVLLHGPPGCGKTSLAN 241 (802)
T ss_pred CCceeeeCCCCccHHHHHH
Confidence 3779999999999998553
No 465
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=85.12 E-value=5.3 Score=45.22 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=19.6
Q ss_pred CCEEEEecCCChhHHHHHHHHHhcC
Q 035988 107 RDVLVIMAAGGGKSLCYQLPAVLRE 131 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~lpal~~~ 131 (692)
+.+|+.+|+|+|||+.+-..+...+
T Consensus 277 ~giLl~GpPGtGKT~lAkava~~~~ 301 (494)
T COG0464 277 KGVLLYGPPGTGKTLLAKAVALESR 301 (494)
T ss_pred CeeEEECCCCCCHHHHHHHHHhhCC
Confidence 4699999999999997766555433
No 466
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=84.91 E-value=4.7 Score=40.74 Aligned_cols=88 Identities=24% Similarity=0.271 Sum_probs=62.0
Q ss_pred CCEEEEecCCChhHHH--HHHHHHhcCCeEEEEcccHHH--HHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHh---
Q 035988 107 RDVLVIMAAGGGKSLC--YQLPAVLREGIALVVSPLLSL--IQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEK--- 179 (692)
Q Consensus 107 ~dviv~apTGsGKTl~--~~lpal~~~~~~lvi~Pt~~L--~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~--- 179 (692)
.++++.++-|+|||-. +++..+...+.-||=++.-.| ..+.++.++....+..++.-+.+.+.....++.++.
T Consensus 53 nnvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~Le 132 (249)
T PF05673_consen 53 NNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDLPELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLE 132 (249)
T ss_pred cceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccHHHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhc
Confidence 6899999999999964 234445556777887887777 557788888878888888888776655544444442
Q ss_pred c----CCCccEEEeChhhh
Q 035988 180 G----EGELKMLYVTPEKI 194 (692)
Q Consensus 180 ~----~~~~~Ili~Tpe~l 194 (692)
| .+..-++|+|-++=
T Consensus 133 Ggle~~P~NvliyATSNRR 151 (249)
T PF05673_consen 133 GGLEARPDNVLIYATSNRR 151 (249)
T ss_pred CccccCCCcEEEEEecchh
Confidence 2 34556788887754
No 467
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=84.86 E-value=7 Score=37.78 Aligned_cols=49 Identities=31% Similarity=0.257 Sum_probs=28.6
Q ss_pred cCCCEEEEecCCChhHHHHH-H-HHHh-----------cCCeEEEEcccHHHHHHHHHHHHHc
Q 035988 105 SGRDVLVIMAAGGGKSLCYQ-L-PAVL-----------REGIALVVSPLLSLIQDQVMCLAAL 154 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~~-l-pal~-----------~~~~~lvi~Pt~~L~~q~~~~l~~~ 154 (692)
.|.-+++.||+|+|||...+ + ..+. .+.+++++..-.. ..+..+++...
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~ 92 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRAL 92 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHH
Confidence 35568999999999996432 2 2222 2357777765544 44566666654
No 468
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=84.82 E-value=2 Score=45.26 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHhcCCCccHHHHHHHHHhcccCCCcccCHHHHHHHHH-HHHHcCcc
Q 035988 480 GHAQCIISLLQDIQDNNQRLTMLQLVDKMKIKLKEIDSDLKREEIEQLVL-QLIIDRVL 537 (692)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~l~~~~~l 537 (692)
...+.+++++.... .+..+++..++..+ | .+...++.+++ +|+..|++
T Consensus 238 ~~~~~~L~al~~~~-~~~~~~~~~ia~~l-g--------~~~~~~~~~~e~~Li~~~li 286 (305)
T TIGR00635 238 EIDRKLLSVLIEQF-QGGPVGLKTLAAAL-G--------EDADTIEDVYEPYLLQIGFL 286 (305)
T ss_pred HHHHHHHHHHHHHh-CCCcccHHHHHHHh-C--------CCcchHHHhhhHHHHHcCCc
Confidence 34555666443222 24457777777555 2 24556778888 69999988
No 469
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=84.76 E-value=3.8 Score=48.06 Aligned_cols=43 Identities=12% Similarity=0.167 Sum_probs=25.6
Q ss_pred CCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEeccc
Q 035988 211 GRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATA 257 (692)
Q Consensus 211 ~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~ 257 (692)
.+.-++|+|..|.+.+-- .-..+.. .+....++..+++.|=+-
T Consensus 128 ~~pl~LVlDDyHli~~~~--l~~~l~f--Ll~~~P~~l~lvv~SR~r 170 (894)
T COG2909 128 EGPLYLVLDDYHLISDPA--LHEALRF--LLKHAPENLTLVVTSRSR 170 (894)
T ss_pred cCceEEEeccccccCccc--HHHHHHH--HHHhCCCCeEEEEEeccC
Confidence 345689999999987532 2222222 234445566677777554
No 470
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=84.75 E-value=4.4 Score=50.61 Aligned_cols=61 Identities=13% Similarity=0.259 Sum_probs=52.3
Q ss_pred CCCceEEEEeccchHHHHHHHHHHC----CCce---eEeccCCCHHHHHHHHHHHhcCCCcEEEeccc
Q 035988 314 NSESGIVYCFSRKECEQVAQELRQR----GISA---DYYHADMDINAREKVHMRWSKNKLQVIVGTVA 374 (692)
Q Consensus 314 ~~~~~IIf~~s~~~~e~l~~~L~~~----g~~v---~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~ 374 (692)
.+.+++|.++|+.-+.++++.++.. |+.+ ..+||+++..++....+.+.+|..+|||+|+.
T Consensus 120 ~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~ 187 (1171)
T TIGR01054 120 KGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTM 187 (1171)
T ss_pred cCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 4678999999999999999888764 4433 46899999999999999999999999999985
No 471
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=84.71 E-value=2.8 Score=46.53 Aligned_cols=59 Identities=17% Similarity=0.169 Sum_probs=55.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeCh
Q 035988 131 EGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTP 191 (692)
Q Consensus 131 ~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tp 191 (692)
..++||.+++++-+...+..|+..|+.+..++|+.+..++...+..+..+ ..+|+|+|-
T Consensus 245 ~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G--~~~vLVaTd 303 (434)
T PRK11192 245 VTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDG--RVNVLVATD 303 (434)
T ss_pred CCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCC--CCcEEEEcc
Confidence 47899999999999999999999999999999999999999999999887 899999994
No 472
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=84.61 E-value=8.9 Score=43.08 Aligned_cols=64 Identities=14% Similarity=0.200 Sum_probs=47.2
Q ss_pred CCCHHHHHHHHHHHc------C----CCEEEEecCCChhHHHHH-------HHHHhcCCeEEEEcccHHHHHHHHHHHHH
Q 035988 91 AYRANQQEIINAVLS------G----RDVLVIMAAGGGKSLCYQ-------LPAVLREGIALVVSPLLSLIQDQVMCLAA 153 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~------g----~dviv~apTGsGKTl~~~-------lpal~~~~~~lvi~Pt~~L~~q~~~~l~~ 153 (692)
.+-|+|.-++-.++. | +..++.+|-|-|||.... ++.-..+....|++|+.+-+...+..++.
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~ar~ 140 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNPARD 140 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHHHHH
Confidence 567999999988873 2 247999999999995432 11113357899999999988888777765
Q ss_pred c
Q 035988 154 L 154 (692)
Q Consensus 154 ~ 154 (692)
.
T Consensus 141 m 141 (546)
T COG4626 141 M 141 (546)
T ss_pred H
Confidence 4
No 473
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=84.59 E-value=8.2 Score=44.36 Aligned_cols=18 Identities=17% Similarity=0.124 Sum_probs=15.1
Q ss_pred CEEEEecCCChhHHHHHH
Q 035988 108 DVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 108 dviv~apTGsGKTl~~~l 125 (692)
-.|+.||.|+|||.++.+
T Consensus 40 ayLf~Gp~G~GKTt~Ar~ 57 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARA 57 (563)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378999999999987654
No 474
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=84.57 E-value=9.2 Score=38.09 Aligned_cols=35 Identities=26% Similarity=0.301 Sum_probs=22.7
Q ss_pred CCCEEEEecCCChhHHHH-HHHHH--hcC------CeEEEEccc
Q 035988 106 GRDVLVIMAAGGGKSLCY-QLPAV--LRE------GIALVVSPL 140 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~-~lpal--~~~------~~~lvi~Pt 140 (692)
|+-+.+.+|+|+|||... ++.+. ..+ ..++++..-
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e 62 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTE 62 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecC
Confidence 456889999999999644 33322 223 566666653
No 475
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=84.57 E-value=4.7 Score=47.69 Aligned_cols=89 Identities=18% Similarity=0.232 Sum_probs=53.9
Q ss_pred CCCEEEEecCCChhHHHHH---HHHHhcCCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCC
Q 035988 106 GRDVLVIMAAGGGKSLCYQ---LPAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEG 182 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~---lpal~~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (692)
|+-+++.+|+|+|||...+ ..+...++++++|..--.+.. ..++.+|+...
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~---~~A~~lGvDl~----------------------- 113 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDP---DYAKKLGVDTD----------------------- 113 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhH---HHHHHcCCChh-----------------------
Confidence 5678899999999996442 223345678888887666653 25556665421
Q ss_pred CccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCccccc
Q 035988 183 ELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCS 225 (692)
Q Consensus 183 ~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~ 225 (692)
++++..|.... .++..+.....-..+++||||-+-.+.
T Consensus 114 --~llv~~~~~~E---~~l~~i~~lv~~~~~~LVVIDSI~aL~ 151 (790)
T PRK09519 114 --SLLVSQPDTGE---QALEIADMLIRSGALDIVVIDSVAALV 151 (790)
T ss_pred --HeEEecCCCHH---HHHHHHHHHhhcCCCeEEEEcchhhhc
Confidence 23444444322 122223333333579999999988765
No 476
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=84.50 E-value=2.9 Score=47.09 Aligned_cols=54 Identities=24% Similarity=0.259 Sum_probs=41.7
Q ss_pred CCCEEEEecCCChhHHHHH--HHHHh-------cCCeEEEEcccHHHHHHHHHHHHHcCCCEE
Q 035988 106 GRDVLVIMAAGGGKSLCYQ--LPAVL-------REGIALVVSPLLSLIQDQVMCLAALGIPAH 159 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~--lpal~-------~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~ 159 (692)
++-++|++..|||||.+++ +.-|+ ..+.++|+.|.+-++.-+...|-.+|..-+
T Consensus 226 ~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~VLPeLGe~~V 288 (747)
T COG3973 226 NKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISRVLPELGEEGV 288 (747)
T ss_pred CCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHHhchhhccCce
Confidence 4568999999999997664 22221 235699999999999999999999876544
No 477
>PRK04841 transcriptional regulator MalT; Provisional
Probab=84.43 E-value=5.7 Score=48.57 Aligned_cols=19 Identities=42% Similarity=0.343 Sum_probs=15.7
Q ss_pred cCCCEEEEecCCChhHHHH
Q 035988 105 SGRDVLVIMAAGGGKSLCY 123 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~ 123 (692)
..+-++|.||.|+|||...
T Consensus 31 ~~~~~~v~apaG~GKTtl~ 49 (903)
T PRK04841 31 NYRLVLVTSPAGYGKTTLI 49 (903)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4456899999999999754
No 478
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=84.40 E-value=5.5 Score=43.03 Aligned_cols=48 Identities=15% Similarity=0.106 Sum_probs=29.2
Q ss_pred cCCCEEEEecCCChhHHHHHHHHHhc--CCeEEEEcccHHHHHHHHHHHHHc
Q 035988 105 SGRDVLVIMAAGGGKSLCYQLPAVLR--EGIALVVSPLLSLIQDQVMCLAAL 154 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~~lpal~~--~~~~lvi~Pt~~L~~q~~~~l~~~ 154 (692)
..+.+.+.||.|.|||+..-+ +.. +...--=++..+.|.+..+.+.+.
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~--f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~ 110 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDL--FYDSLPIKRKRRVHFHEFMLDVHSRLHQL 110 (362)
T ss_pred CCceEEEECCCCCchhHHHHH--HHHhCCccccccccccHHHHHHHHHHHHH
Confidence 357899999999999985322 111 110011124556777777777766
No 479
>PRK08006 replicative DNA helicase; Provisional
Probab=84.25 E-value=9.4 Score=42.90 Aligned_cols=144 Identities=22% Similarity=0.182 Sum_probs=65.6
Q ss_pred CCEEEEecCCChhHHHHH-HH---HHhcCCeEEEEcccHHHHHHHHHHHHHc--CCCEEEE-ecCCChhHHHHHHHHHHh
Q 035988 107 RDVLVIMAAGGGKSLCYQ-LP---AVLREGIALVVSPLLSLIQDQVMCLAAL--GIPAHML-TSTTSKEDEKFIYKALEK 179 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~-lp---al~~~~~~lvi~Pt~~L~~q~~~~l~~~--gi~~~~~-~~~~~~~~~~~~~~~l~~ 179 (692)
.=+++.|.||.|||.-.+ +. +...+..+++++.= -=..|...++-.. ++....+ .+..+..+...+......
T Consensus 225 ~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlE-M~~~ql~~Rlla~~~~v~~~~i~~~~l~~~e~~~~~~a~~~ 303 (471)
T PRK08006 225 DLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLE-MPGEQIMMRMLASLSRVDQTRIRTGQLDDEDWARISGTMGI 303 (471)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEecc-CCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHHHHHH
Confidence 447789999999997543 21 12234566666532 2233444444322 3433322 344555554443332221
Q ss_pred cCCCccEEEe-ChhhhhchHHHHHHHHhhhhc-CCceEEEEeCcccccccCC-Cch-----HHHHHHHHHHhhCCCCCEE
Q 035988 180 GEGELKMLYV-TPEKISKSKRFMSKLEKCHHA-GRLSLISIDEAHCCSQWGH-DFR-----PDYKNLGILKTQFPDVPMM 251 (692)
Q Consensus 180 ~~~~~~Ili~-Tpe~l~~~~~~~~~l~~~~~~-~~l~~iVIDEaH~l~~~g~-~fr-----~~~~~l~~l~~~~~~~~~i 251 (692)
-.....+.|- +|. +. ...+.......... ..+++||||=.|.+..-+. +-+ ...+.|+.+...+ ++|++
T Consensus 304 ~~~~~~l~I~d~~~-~t-~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAkel-~ipVi 380 (471)
T PRK08006 304 LLEKRNMYIDDSSG-LT-PTEVRSRARRIFREHGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKEL-QVPVV 380 (471)
T ss_pred HHhcCCEEEECCCC-CC-HHHHHHHHHHHHHhcCCCCEEEEccHHHccCCCCCCCcHHHHHHHHHHHHHHHHHh-CCeEE
Confidence 1012334443 222 11 11121222221111 3689999999998853221 111 1112223333322 67787
Q ss_pred EEe
Q 035988 252 ALT 254 (692)
Q Consensus 252 ~lS 254 (692)
++|
T Consensus 381 ~Ls 383 (471)
T PRK08006 381 ALS 383 (471)
T ss_pred EEE
Confidence 777
No 480
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=84.17 E-value=10 Score=44.57 Aligned_cols=132 Identities=21% Similarity=0.318 Sum_probs=75.9
Q ss_pred CCHHHHH---HHHHHHcC--CCEEEEecCCChhHHHHHHH---HHhcC--CeEEEEcccHHHHHHHH----HHHHHcCCC
Q 035988 92 YRANQQE---IINAVLSG--RDVLVIMAAGGGKSLCYQLP---AVLRE--GIALVVSPLLSLIQDQV----MCLAALGIP 157 (692)
Q Consensus 92 ~r~~Q~~---ai~~il~g--~dviv~apTGsGKTl~~~lp---al~~~--~~~lvi~Pt~~L~~q~~----~~l~~~gi~ 157 (692)
.+.-|.+ .+..++.+ +-+++.|.-|=|||.+.-+. +.... ..++|.+|+.+=++... +.+..+|.+
T Consensus 212 ~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg~~ 291 (758)
T COG1444 212 LTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKGLEFLGYK 291 (758)
T ss_pred cChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHhHHHhCCc
Confidence 4455555 44555554 35889999999999765422 22233 48999999977665544 445556655
Q ss_pred EEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHH
Q 035988 158 AHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKN 237 (692)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~ 237 (692)
-.+........ .... .....|=|.+|.... ..-+++|||||=.+. -| -
T Consensus 292 ~~v~~d~~g~~------~~~~--~~~~~i~y~~P~~a~---------------~~~DllvVDEAAaIp------lp---l 339 (758)
T COG1444 292 RKVAPDALGEI------REVS--GDGFRIEYVPPDDAQ---------------EEADLLVVDEAAAIP------LP---L 339 (758)
T ss_pred cccccccccce------eeec--CCceeEEeeCcchhc---------------ccCCEEEEehhhcCC------hH---H
Confidence 33322211100 0000 114567788888432 126899999998763 11 1
Q ss_pred HHHHHhhCCCCCEEEEecccc
Q 035988 238 LGILKTQFPDVPMMALTATAT 258 (692)
Q Consensus 238 l~~l~~~~~~~~~i~lSAT~~ 258 (692)
|..+... .+.++||.|..
T Consensus 340 L~~l~~~---~~rv~~sTTIh 357 (758)
T COG1444 340 LHKLLRR---FPRVLFSTTIH 357 (758)
T ss_pred HHHHHhh---cCceEEEeeec
Confidence 2233333 35789999973
No 481
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=84.05 E-value=1.5 Score=48.47 Aligned_cols=71 Identities=15% Similarity=0.213 Sum_probs=54.9
Q ss_pred ceEEEEeccchHHHHHHHHHHC----CCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccc-----cccc----cCCCC
Q 035988 317 SGIVYCFSRKECEQVAQELRQR----GISADYYHADMDINAREKVHMRWSKNKLQVIVGTVA-----FGMG----INKPD 383 (692)
Q Consensus 317 ~~IIf~~s~~~~e~l~~~L~~~----g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~-----~~~G----IDip~ 383 (692)
-+||+++|++-|.++.+.|... ++.+..+.|||....++++++. ..+|+|||+- +..+ =++.+
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATPGRlweli~e~n~~l~~~k~ 340 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATPGRLWELIEEDNTHLGNFKK 340 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecchHHHHHHHhhhhhhhhhhh
Confidence 4899999999999999999764 8999999999998888887765 6679999973 1111 14556
Q ss_pred ccEEEEeC
Q 035988 384 VRFVIHHS 391 (692)
Q Consensus 384 v~~VI~~~ 391 (692)
++|.|.-.
T Consensus 341 vkcLVlDE 348 (731)
T KOG0347|consen 341 VKCLVLDE 348 (731)
T ss_pred ceEEEEcc
Confidence 77766433
No 482
>PRK06321 replicative DNA helicase; Provisional
Probab=84.00 E-value=10 Score=42.64 Aligned_cols=124 Identities=12% Similarity=0.103 Sum_probs=59.6
Q ss_pred HHHHHHcC----CCEEEEecCCChhHHHHHHHHH----hcCCeEEEEcccHHHHHHHHHHHHH--cCCCEEEE-ecCCCh
Q 035988 99 IINAVLSG----RDVLVIMAAGGGKSLCYQLPAV----LREGIALVVSPLLSLIQDQVMCLAA--LGIPAHML-TSTTSK 167 (692)
Q Consensus 99 ai~~il~g----~dviv~apTGsGKTl~~~lpal----~~~~~~lvi~Pt~~L~~q~~~~l~~--~gi~~~~~-~~~~~~ 167 (692)
.++.++.| .=+++.|.||.|||.-.+--+. ..+..+++++. -.=..|...++-. .+++...+ .+..+.
T Consensus 215 ~LD~~t~Gl~~G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSL-EMs~~ql~~Rlla~~s~v~~~~i~~~~l~~ 293 (472)
T PRK06321 215 DLDKMINGFSPSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSL-EMTVDQLIHRIICSRSEVESKKISVGDLSG 293 (472)
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEec-cCCHHHHHHHHHHhhcCCCHHHhhcCCCCH
Confidence 34555443 3367899999999965432111 23455666542 1123333444332 24443322 344444
Q ss_pred hHHHHHHHHHHhcCCCccEEEe-ChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccc
Q 035988 168 EDEKFIYKALEKGEGELKMLYV-TPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQ 226 (692)
Q Consensus 168 ~~~~~~~~~l~~~~~~~~Ili~-Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~ 226 (692)
.+..........-. ...+.|- +|. + +...+............+++||||=.+.+..
T Consensus 294 ~e~~~~~~a~~~l~-~~~~~idd~~~-~-ti~~i~~~~r~~~~~~~~~lvvIDyLql~~~ 350 (472)
T PRK06321 294 RDFQRIVSVVNEMQ-EHTLLIDDQPG-L-KITDLRARARRMKESYDIQFLIIDYLQLLSG 350 (472)
T ss_pred HHHHHHHHHHHHHH-cCCEEEeCCCC-C-CHHHHHHHHHHHHHhcCCCEEEEcchHHcCC
Confidence 44443333332211 2345554 232 1 1112222333322234689999999998863
No 483
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=83.99 E-value=2.6 Score=42.88 Aligned_cols=83 Identities=22% Similarity=0.212 Sum_probs=56.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHcC---CCEEEEecCC-ChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHh
Q 035988 131 EGIALVVSPLLSLIQDQVMCLAALG---IPAHMLTSTT-SKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEK 206 (692)
Q Consensus 131 ~~~~lvi~Pt~~L~~q~~~~l~~~g---i~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~ 206 (692)
.+.+|||+..--=+.+..+.++.+. ..++-+.+-+ ..++.. ..+... .+.|.||||+++.. +++ ..
T Consensus 126 sP~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~eqv---~~L~~~--~~~i~vGTP~Rl~k---Lle--~~ 195 (252)
T PF14617_consen 126 SPHVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKLEEQV---KLLKKT--RVHIAVGTPGRLSK---LLE--NG 195 (252)
T ss_pred CCEEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccHHHHH---HHHHhC--CceEEEeChHHHHH---HHH--cC
Confidence 4788999988777899999999873 3333333332 333332 233333 78999999998763 332 35
Q ss_pred hhhcCCceEEEEeCccc
Q 035988 207 CHHAGRLSLISIDEAHC 223 (692)
Q Consensus 207 ~~~~~~l~~iVIDEaH~ 223 (692)
.+.+.++.+||||--|.
T Consensus 196 ~L~l~~l~~ivlD~s~~ 212 (252)
T PF14617_consen 196 ALSLSNLKRIVLDWSYL 212 (252)
T ss_pred CCCcccCeEEEEcCCcc
Confidence 66778999999998764
No 484
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=83.99 E-value=1.1 Score=48.44 Aligned_cols=22 Identities=36% Similarity=0.523 Sum_probs=18.5
Q ss_pred HcCCCEEEEecCCChhHHHHHH
Q 035988 104 LSGRDVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 104 l~g~dviv~apTGsGKTl~~~l 125 (692)
|...++|+.+|||||||+.++-
T Consensus 224 LeKSNvLllGPtGsGKTllaqT 245 (564)
T KOG0745|consen 224 LEKSNVLLLGPTGSGKTLLAQT 245 (564)
T ss_pred eecccEEEECCCCCchhHHHHH
Confidence 4567899999999999997764
No 485
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=83.97 E-value=2 Score=44.29 Aligned_cols=32 Identities=25% Similarity=0.370 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHHcC--CCEEEEecCCChhHHHH
Q 035988 92 YRANQQEIINAVLSG--RDVLVIMAAGGGKSLCY 123 (692)
Q Consensus 92 ~r~~Q~~ai~~il~g--~dviv~apTGsGKTl~~ 123 (692)
+.+.|.+.+..++.. .-+++.+|||||||...
T Consensus 64 ~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l 97 (264)
T cd01129 64 LKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL 97 (264)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH
Confidence 467788888776643 34899999999999753
No 486
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=83.87 E-value=15 Score=35.13 Aligned_cols=128 Identities=16% Similarity=0.209 Sum_probs=55.0
Q ss_pred EEEEecCCChhHHHHHHHHH---hcCCeEEEEcccHH-HHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCc
Q 035988 109 VLVIMAAGGGKSLCYQLPAV---LREGIALVVSPLLS-LIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGEL 184 (692)
Q Consensus 109 viv~apTGsGKTl~~~lpal---~~~~~~lvi~Pt~~-L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 184 (692)
+.+.-..|=|||.+++=-++ -++.+++++-=.+. --.--...++.++. +.+...+..
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l~~l~~-~~~~~~g~~------------------ 66 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLKGGRYSGELKALKKLPN-VEIERFGKG------------------ 66 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS--SS--HHHHHHGGGT---EEEE--TT------------------
T ss_pred EEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEecCCCCcCHHHHHHhCCe-EEEEEcCCc------------------
Confidence 45666788899998874443 34567777655555 22222333444431 111111111
Q ss_pred cEEEeChhh---hhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccch
Q 035988 185 KMLYVTPEK---ISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQ 259 (692)
Q Consensus 185 ~Ili~Tpe~---l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~ 259 (692)
++....+. .......++..........+++||+||+-...++| +-+.-.-+..+. ..|...=+.+|.--.+
T Consensus 67 -f~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~dlvILDEi~~a~~~g--ll~~~~v~~~l~-~rp~~~evVlTGR~~~ 140 (172)
T PF02572_consen 67 -FVWRMNEEEEDRAAAREGLEEAKEAISSGEYDLVILDEINYAVDYG--LLSEEEVLDLLE-NRPESLEVVLTGRNAP 140 (172)
T ss_dssp -----GGGHHHHHHHHHHHHHHHHHHTT-TT-SEEEEETHHHHHHTT--SS-HHHHHHHHH-TS-TT-EEEEE-SS--
T ss_pred -ccccCCCcHHHHHHHHHHHHHHHHHHhCCCCCEEEEcchHHHhHCC--CccHHHHHHHHH-cCCCCeEEEEECCCCC
Confidence 00000000 00011233444444455789999999999988888 444333233344 4444444566665444
No 487
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=83.83 E-value=3.2 Score=44.06 Aligned_cols=20 Identities=20% Similarity=0.380 Sum_probs=16.8
Q ss_pred CCCEEEEecCCChhHHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~l 125 (692)
-+.+++.+|+|+|||+++-.
T Consensus 127 ~kGiLL~GPpG~GKTmlAKA 146 (386)
T KOG0737|consen 127 PKGILLYGPPGTGKTMLAKA 146 (386)
T ss_pred CccceecCCCCchHHHHHHH
Confidence 36799999999999997643
No 488
>PRK10436 hypothetical protein; Provisional
Probab=83.77 E-value=1.8 Score=48.40 Aligned_cols=32 Identities=22% Similarity=0.263 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHHcC--CCEEEEecCCChhHHHH
Q 035988 92 YRANQQEIINAVLSG--RDVLVIMAAGGGKSLCY 123 (692)
Q Consensus 92 ~r~~Q~~ai~~il~g--~dviv~apTGsGKTl~~ 123 (692)
+.+.|.+.+..++.. .-+++.+|||||||.+.
T Consensus 202 ~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL 235 (462)
T PRK10436 202 MTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL 235 (462)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH
Confidence 557777778776643 45889999999999753
No 489
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=83.74 E-value=3.6 Score=46.12 Aligned_cols=58 Identities=16% Similarity=0.156 Sum_probs=54.0
Q ss_pred CeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeCh
Q 035988 132 GIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTP 191 (692)
Q Consensus 132 ~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tp 191 (692)
..+||.++++.-+...++.|...|+.+..++|+.+..++..+...+..+ ..+|+|+|-
T Consensus 246 ~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g--~~~iLVaTd 303 (456)
T PRK10590 246 QQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSG--DIRVLVATD 303 (456)
T ss_pred CcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcC--CCcEEEEcc
Confidence 5899999999999999999999999999999999999999999998887 899999995
No 490
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=83.59 E-value=2.6 Score=49.09 Aligned_cols=59 Identities=19% Similarity=0.172 Sum_probs=40.7
Q ss_pred CCCEEEEecCCChhHHHH--HHHHH-hcCCeEEEEcccHH--HHHHHHHHHHHcCCC--EEEEecC
Q 035988 106 GRDVLVIMAAGGGKSLCY--QLPAV-LREGIALVVSPLLS--LIQDQVMCLAALGIP--AHMLTST 164 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~--~lpal-~~~~~~lvi~Pt~~--L~~q~~~~l~~~gi~--~~~~~~~ 164 (692)
.+++++.|+||+|||..+ ++.-. ..+..++|+=|--. |.......++..|-. ...++.+
T Consensus 176 ~~H~lv~G~TGsGKT~l~~~l~~q~i~~g~~viv~DpKgD~~l~~~~~~~~~~~G~~dd~~~f~~~ 241 (634)
T TIGR03743 176 VGHTLVLGTTGVGKTRLAELLITQDIRRGDVVIVIDPKGDADLKRRMRAEAKRAGRPDRFYYFHPA 241 (634)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCchHHHHHHHHHHHHhCCCceEEEEecC
Confidence 468999999999999776 23323 33556666666643 788888888888766 5555543
No 491
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=83.59 E-value=1.8 Score=43.29 Aligned_cols=15 Identities=33% Similarity=0.412 Sum_probs=12.6
Q ss_pred EEEEecCCChhHHHH
Q 035988 109 VLVIMAAGGGKSLCY 123 (692)
Q Consensus 109 viv~apTGsGKTl~~ 123 (692)
+++.|+.|+|||...
T Consensus 1 ~vv~G~pGsGKSt~i 15 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLI 15 (234)
T ss_pred CEEEcCCCCCHHHHH
Confidence 478999999999843
No 492
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=83.57 E-value=3.5 Score=46.24 Aligned_cols=59 Identities=17% Similarity=0.139 Sum_probs=54.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeCh
Q 035988 131 EGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTP 191 (692)
Q Consensus 131 ~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tp 191 (692)
+..+||.++++.-+...++.+...|+.+..++|+.+..++..+...+..+ ..+|+|+|-
T Consensus 242 ~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g--~~~vLVaTd 300 (460)
T PRK11776 242 PESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANR--SCSVLVATD 300 (460)
T ss_pred CCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcC--CCcEEEEec
Confidence 46799999999999999999999999999999999999999999988877 899999995
No 493
>PHA00350 putative assembly protein
Probab=83.51 E-value=2 Score=46.78 Aligned_cols=24 Identities=21% Similarity=0.171 Sum_probs=18.1
Q ss_pred EEEEecCCChhHHHHH----HHHHhcCC
Q 035988 109 VLVIMAAGGGKSLCYQ----LPAVLREG 132 (692)
Q Consensus 109 viv~apTGsGKTl~~~----lpal~~~~ 132 (692)
.++.+..|||||+... +|++..+.
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~GR 31 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKDGR 31 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHCCC
Confidence 5789999999997653 56666554
No 494
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=83.47 E-value=3.3 Score=47.17 Aligned_cols=60 Identities=22% Similarity=0.318 Sum_probs=56.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChh
Q 035988 131 EGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPE 192 (692)
Q Consensus 131 ~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe 192 (692)
...+||.+.|+..+......+...|+++..++|+.+...+...+..+..+ ..+|+|+|--
T Consensus 273 ~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g--~~~vLVaTDv 332 (513)
T COG0513 273 EGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDG--ELRVLVATDV 332 (513)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcC--CCCEEEEech
Confidence 35699999999999999999999999999999999999999999999977 9999999965
No 495
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=83.29 E-value=1 Score=46.47 Aligned_cols=39 Identities=18% Similarity=0.235 Sum_probs=24.5
Q ss_pred cCCCEEEEecCCChhHHHH--HHHHHhcC-CeEEEEcccHHH
Q 035988 105 SGRDVLVIMAAGGGKSLCY--QLPAVLRE-GIALVVSPLLSL 143 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~--~lpal~~~-~~~lvi~Pt~~L 143 (692)
.+..+++.||||||||... ++..+-.. .+++++-...++
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred cceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 4678999999999999643 22222233 456665555444
No 496
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=83.01 E-value=12 Score=41.86 Aligned_cols=57 Identities=26% Similarity=0.239 Sum_probs=35.2
Q ss_pred HHHHHHc-----CCCEEEEecCCChhHHHHH-HHH-H-hcCCeEEEEcccHHHHHHHHHHHHHcCC
Q 035988 99 IINAVLS-----GRDVLVIMAAGGGKSLCYQ-LPA-V-LREGIALVVSPLLSLIQDQVMCLAALGI 156 (692)
Q Consensus 99 ai~~il~-----g~dviv~apTGsGKTl~~~-lpa-l-~~~~~~lvi~Pt~~L~~q~~~~l~~~gi 156 (692)
-++.++. |.-+++.+++|+|||...+ +.. + ..+.++++++.- +-..|...+..++|+
T Consensus 82 ~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~E-Es~~qi~~ra~rlg~ 146 (454)
T TIGR00416 82 ELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGE-ESLQQIKMRAIRLGL 146 (454)
T ss_pred HHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECc-CCHHHHHHHHHHcCC
Confidence 3455554 4568999999999996543 211 1 234678887754 334566666666653
No 497
>CHL00095 clpC Clp protease ATP binding subunit
Probab=83.00 E-value=8.2 Score=46.68 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=16.2
Q ss_pred CCCEEEEecCCChhHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~ 124 (692)
..++++++|+|.|||....
T Consensus 200 ~~n~lL~G~pGvGKTal~~ 218 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAE 218 (821)
T ss_pred cCCeEEECCCCCCHHHHHH
Confidence 3579999999999998654
No 498
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=82.98 E-value=8 Score=43.40 Aligned_cols=60 Identities=18% Similarity=0.298 Sum_probs=55.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChh
Q 035988 131 EGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPE 192 (692)
Q Consensus 131 ~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe 192 (692)
++++||.|-|+--+.+....++..+.++..++|+.+..++..++..+..| .+.|+|+|--
T Consensus 341 ~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG--~~~vLVATdV 400 (519)
T KOG0331|consen 341 EGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREG--KSPVLVATDV 400 (519)
T ss_pred CCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccC--CcceEEEccc
Confidence 35899999999999999999999999999999999999999999998887 9999999965
No 499
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=82.86 E-value=15 Score=42.71 Aligned_cols=63 Identities=10% Similarity=0.002 Sum_probs=43.4
Q ss_pred CCHHHHHHHHHHH---cCCCEEEEecCCChhHHHHHH--HHH-h-cCCeEEEEcccHHHHHHHHHHHHHc
Q 035988 92 YRANQQEIINAVL---SGRDVLVIMAAGGGKSLCYQL--PAV-L-REGIALVVSPLLSLIQDQVMCLAAL 154 (692)
Q Consensus 92 ~r~~Q~~ai~~il---~g~dviv~apTGsGKTl~~~l--pal-~-~~~~~lvi~Pt~~L~~q~~~~l~~~ 154 (692)
+.|.=.+-|+.++ ..+-.++.+|=|-|||.+..+ .++ . .+..++|.+|...-+++..+.+...
T Consensus 170 ~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~~ 239 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVETV 239 (752)
T ss_pred CChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHHH
Confidence 3455555555554 467788999999999965432 122 2 3678999999888888877766553
No 500
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=82.85 E-value=13 Score=45.39 Aligned_cols=117 Identities=19% Similarity=0.210 Sum_probs=93.8
Q ss_pred HHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHH------------------------------------hcCCeEEEEc
Q 035988 95 NQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAV------------------------------------LREGIALVVS 138 (692)
Q Consensus 95 ~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal------------------------------------~~~~~~lvi~ 138 (692)
-|++-+..+..+-|++-...|=-=.||=..+.-+ .++|.+.+|.
T Consensus 731 k~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~ireAI~REl~RgGQvfYv~ 810 (1139)
T COG1197 731 KHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDDLLIREAILRELLRGGQVFYVH 810 (1139)
T ss_pred cHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCChHHHHHHHHHHHhcCCEEEEEe
Confidence 4678888888888888888887777764332111 2378999999
Q ss_pred ccHHHHHHHHHHHHHc--CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEE
Q 035988 139 PLLSLIQDQVMCLAAL--GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLI 216 (692)
Q Consensus 139 Pt~~L~~q~~~~l~~~--gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~i 216 (692)
|..+=+.+....++.+ ..++++.+|.+...+...+...+..+ .++|++||.= ++......+...+
T Consensus 811 NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g--~~dVLv~TTI-----------IEtGIDIPnANTi 877 (1139)
T COG1197 811 NRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNG--EYDVLVCTTI-----------IETGIDIPNANTI 877 (1139)
T ss_pred cchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcC--CCCEEEEeee-----------eecCcCCCCCceE
Confidence 9999999999999998 46788899999999999999999888 9999999953 1344456778899
Q ss_pred EEeCcccc
Q 035988 217 SIDEAHCC 224 (692)
Q Consensus 217 VIDEaH~l 224 (692)
||+-||++
T Consensus 878 IIe~AD~f 885 (1139)
T COG1197 878 IIERADKF 885 (1139)
T ss_pred EEeccccc
Confidence 99999993
Done!