Query 035988
Match_columns 692
No_of_seqs 534 out of 4230
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 13:55:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035988.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035988hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v1x_A ATP-dependent DNA helic 100.0 2E-82 6.9E-87 723.9 54.8 498 61-559 13-548 (591)
2 1oyw_A RECQ helicase, ATP-depe 100.0 1.4E-75 4.7E-80 660.8 50.5 467 72-555 6-513 (523)
3 2db3_A ATP-dependent RNA helic 100.0 1.4E-52 4.9E-57 463.5 39.2 354 55-429 44-415 (434)
4 2i4i_A ATP-dependent RNA helic 100.0 1.4E-50 4.7E-55 444.8 36.7 357 58-432 6-393 (417)
5 3sqw_A ATP-dependent RNA helic 100.0 1.1E-50 3.8E-55 464.8 31.1 358 63-433 16-409 (579)
6 3i5x_A ATP-dependent RNA helic 100.0 5.1E-50 1.7E-54 458.1 32.2 358 63-433 67-460 (563)
7 2j0s_A ATP-dependent RNA helic 100.0 3.3E-49 1.1E-53 433.2 36.6 347 63-430 33-391 (410)
8 1xti_A Probable ATP-dependent 100.0 4.9E-48 1.7E-52 420.6 37.7 337 68-423 9-358 (391)
9 1s2m_A Putative ATP-dependent 100.0 4.2E-48 1.4E-52 422.8 36.0 345 66-432 20-375 (400)
10 3eiq_A Eukaryotic initiation f 100.0 1.2E-48 4.2E-53 428.7 31.2 350 63-431 36-396 (414)
11 3pey_A ATP-dependent RNA helic 100.0 1.5E-47 5E-52 416.7 35.0 335 66-424 4-358 (395)
12 3fht_A ATP-dependent RNA helic 100.0 3.8E-47 1.3E-51 416.3 37.0 336 64-423 22-380 (412)
13 1hv8_A Putative ATP-dependent 100.0 4.9E-47 1.7E-51 408.4 36.5 339 68-432 7-355 (367)
14 1fuu_A Yeast initiation factor 100.0 1.7E-48 5.7E-53 424.5 21.8 350 62-432 16-376 (394)
15 2z0m_A 337AA long hypothetical 100.0 1E-46 3.6E-51 401.2 34.2 326 75-430 1-330 (337)
16 3fmp_B ATP-dependent RNA helic 100.0 7.8E-48 2.7E-52 431.3 17.6 334 66-423 91-447 (479)
17 3oiy_A Reverse gyrase helicase 100.0 7.2E-46 2.5E-50 407.5 29.8 320 78-426 9-367 (414)
18 4gl2_A Interferon-induced heli 100.0 2.3E-45 7.8E-50 430.3 22.8 373 91-475 7-593 (699)
19 4a4z_A Antiviral helicase SKI2 100.0 4.5E-43 1.5E-47 420.3 31.8 356 84-467 33-563 (997)
20 3fho_A ATP-dependent RNA helic 100.0 9.8E-45 3.4E-49 408.6 16.0 328 72-422 123-470 (508)
21 2ykg_A Probable ATP-dependent 100.0 9.3E-43 3.2E-47 408.0 28.2 326 86-428 8-522 (696)
22 1gm5_A RECG; helicase, replica 100.0 3.9E-42 1.3E-46 400.2 27.7 373 9-423 297-698 (780)
23 4a2p_A RIG-I, retinoic acid in 100.0 7.3E-42 2.5E-46 389.3 28.7 321 90-427 6-513 (556)
24 3l9o_A ATP-dependent RNA helic 100.0 6.1E-42 2.1E-46 413.9 28.4 334 74-433 168-609 (1108)
25 2va8_A SSO2462, SKI2-type heli 100.0 1.5E-40 5.1E-45 390.1 36.0 326 68-423 9-409 (715)
26 2p6r_A Afuhel308 helicase; pro 100.0 2.7E-41 9.1E-46 395.4 28.8 325 75-425 10-391 (702)
27 2zj8_A DNA helicase, putative 100.0 4.8E-41 1.7E-45 394.3 31.0 326 72-425 5-390 (720)
28 3tbk_A RIG-I helicase domain; 100.0 3.9E-41 1.3E-45 382.9 26.3 320 91-427 4-512 (555)
29 1tf5_A Preprotein translocase 100.0 2E-40 6.8E-45 378.6 31.4 329 82-424 75-547 (844)
30 2xgj_A ATP-dependent RNA helic 100.0 3.5E-40 1.2E-44 395.2 34.6 323 84-433 80-511 (1010)
31 4ddu_A Reverse gyrase; topoiso 100.0 1.6E-40 5.4E-45 401.4 31.0 287 79-394 67-388 (1104)
32 1wp9_A ATP-dependent RNA helic 100.0 7.5E-40 2.6E-44 364.7 31.9 318 91-426 9-479 (494)
33 4a2q_A RIG-I, retinoic acid in 100.0 5.6E-40 1.9E-44 389.2 31.3 329 84-427 241-754 (797)
34 4a2w_A RIG-I, retinoic acid in 100.0 2E-40 7E-45 397.4 27.7 325 86-425 243-752 (936)
35 2eyq_A TRCF, transcription-rep 100.0 2.1E-38 7.2E-43 385.2 41.0 322 72-423 585-923 (1151)
36 1gku_B Reverse gyrase, TOP-RG; 100.0 2.5E-40 8.7E-45 399.8 16.8 321 79-430 46-462 (1054)
37 2fsf_A Preprotein translocase 100.0 1.2E-37 4E-42 354.8 32.3 323 81-424 65-585 (853)
38 1nkt_A Preprotein translocase 100.0 4.8E-37 1.7E-41 349.9 33.2 331 80-424 101-619 (922)
39 4f92_B U5 small nuclear ribonu 100.0 2.1E-37 7.2E-42 386.6 30.4 331 88-433 923-1319(1724)
40 4f92_B U5 small nuclear ribonu 100.0 2.7E-37 9.2E-42 385.6 27.0 335 84-433 71-484 (1724)
41 2jlq_A Serine protease subunit 100.0 4.1E-38 1.4E-42 349.1 16.7 285 88-422 1-311 (451)
42 2oca_A DAR protein, ATP-depend 100.0 1.1E-37 3.8E-42 351.7 19.9 302 91-420 113-453 (510)
43 2fwr_A DNA repair protein RAD2 100.0 1.3E-37 4.4E-42 347.7 19.8 293 91-422 93-454 (472)
44 2xau_A PRE-mRNA-splicing facto 100.0 2.5E-36 8.7E-41 353.5 22.3 328 65-424 70-445 (773)
45 1yks_A Genome polyprotein [con 100.0 8.4E-37 2.9E-41 337.2 15.6 276 102-429 4-309 (440)
46 2whx_A Serine protease/ntpase/ 100.0 1.2E-36 4.1E-41 347.8 16.7 292 89-429 169-488 (618)
47 2wv9_A Flavivirin protease NS2 100.0 3.4E-37 1.2E-41 354.6 11.7 287 91-429 215-543 (673)
48 3h1t_A Type I site-specific re 100.0 7.6E-35 2.6E-39 334.3 25.8 307 91-420 178-556 (590)
49 3o8b_A HCV NS3 protease/helica 100.0 2.9E-36 9.8E-41 341.9 12.2 280 91-426 217-518 (666)
50 2z83_A Helicase/nucleoside tri 100.0 5.5E-36 1.9E-40 332.6 12.6 269 100-422 15-313 (459)
51 3rc3_A ATP-dependent RNA helic 100.0 7.4E-34 2.5E-38 325.9 27.5 294 94-434 143-456 (677)
52 2v6i_A RNA helicase; membrane, 100.0 1.5E-34 5.2E-39 318.4 19.8 266 105-420 1-288 (431)
53 3dmq_A RNA polymerase-associat 100.0 4.8E-33 1.6E-37 334.1 24.2 316 91-419 153-610 (968)
54 3jux_A Protein translocase sub 100.0 5.8E-31 2E-35 293.7 37.2 326 79-424 64-589 (822)
55 1z63_A Helicase of the SNF2/RA 100.0 2.3E-31 7.9E-36 299.3 25.4 306 91-423 37-454 (500)
56 3fe2_A Probable ATP-dependent 100.0 1.6E-29 5.5E-34 256.7 22.4 203 54-273 16-233 (242)
57 3iuy_A Probable ATP-dependent 100.0 2.3E-29 8E-34 253.0 19.0 200 57-272 9-223 (228)
58 3mwy_W Chromo domain-containin 100.0 7.7E-29 2.6E-33 293.2 26.0 318 91-423 236-685 (800)
59 1z3i_X Similar to RAD54-like; 100.0 5.4E-28 1.8E-32 279.1 29.6 315 91-423 55-529 (644)
60 1c4o_A DNA nucleotide excision 100.0 1.4E-27 4.8E-32 275.5 30.6 208 212-430 325-558 (664)
61 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 3.8E-28 1.3E-32 289.6 24.1 310 91-420 271-707 (1038)
62 2pl3_A Probable ATP-dependent 99.9 6.8E-27 2.3E-31 236.3 22.3 189 63-270 21-225 (236)
63 2oxc_A Probable ATP-dependent 99.9 3.5E-27 1.2E-31 237.6 19.7 195 59-270 16-221 (230)
64 2ipc_A Preprotein translocase 99.9 1.6E-25 5.3E-30 254.4 35.0 323 79-423 68-699 (997)
65 3ber_A Probable ATP-dependent 99.9 8E-27 2.7E-31 237.9 21.6 194 63-272 39-242 (249)
66 1vec_A ATP-dependent RNA helic 99.9 8.9E-27 3E-31 230.1 21.2 188 68-272 4-202 (206)
67 3ly5_A ATP-dependent RNA helic 99.9 8E-27 2.7E-31 239.7 21.5 181 75-272 61-257 (262)
68 3dkp_A Probable ATP-dependent 99.9 9.2E-28 3.2E-32 244.1 14.1 206 54-273 12-236 (245)
69 1q0u_A Bstdead; DEAD protein, 99.9 1.8E-27 6.3E-32 237.7 15.9 188 67-272 4-206 (219)
70 3bor_A Human initiation factor 99.9 6.2E-27 2.1E-31 236.9 19.6 196 61-272 24-229 (237)
71 1wrb_A DJVLGB; RNA helicase, D 99.9 2.5E-27 8.6E-32 242.1 16.9 200 58-272 12-234 (253)
72 1qde_A EIF4A, translation init 99.9 7.7E-27 2.6E-31 233.8 19.9 194 61-272 8-211 (224)
73 2gxq_A Heat resistant RNA depe 99.9 3.2E-26 1.1E-30 226.1 22.3 188 68-272 2-200 (207)
74 1t6n_A Probable ATP-dependent 99.9 1.8E-26 6.2E-31 230.5 19.6 193 64-272 11-215 (220)
75 2d7d_A Uvrabc system protein B 99.9 4.1E-25 1.4E-29 254.9 32.9 174 247-430 386-564 (661)
76 3fmo_B ATP-dependent RNA helic 99.9 2E-26 6.7E-31 241.4 18.4 188 66-274 91-294 (300)
77 2hjv_A ATP-dependent RNA helic 99.9 1.9E-24 6.6E-29 205.5 18.3 147 281-431 5-151 (163)
78 3eaq_A Heat resistant RNA depe 99.9 4.1E-24 1.4E-28 212.2 15.7 132 298-431 16-147 (212)
79 2rb4_A ATP-dependent RNA helic 99.9 1.3E-23 4.5E-28 202.2 16.4 131 299-431 20-156 (175)
80 1t5i_A C_terminal domain of A 99.9 1.1E-23 3.9E-28 202.0 14.6 124 298-423 16-139 (172)
81 2jgn_A DBX, DDX3, ATP-dependen 99.9 1.3E-23 4.3E-28 204.1 15.0 147 283-432 17-163 (185)
82 1fuk_A Eukaryotic initiation f 99.9 1.3E-23 4.4E-28 200.2 13.5 130 300-431 17-146 (165)
83 2vl7_A XPD; helicase, unknown 99.9 2E-22 6.9E-27 227.8 24.2 314 87-417 4-517 (540)
84 2p6n_A ATP-dependent RNA helic 99.9 3.9E-23 1.3E-27 201.6 14.7 130 298-430 40-170 (191)
85 3i32_A Heat resistant RNA depe 99.9 7.9E-23 2.7E-27 212.9 15.1 132 299-432 14-145 (300)
86 2yjt_D ATP-dependent RNA helic 99.8 6.9E-24 2.4E-28 203.2 0.0 130 300-431 17-146 (170)
87 3crv_A XPD/RAD3 related DNA he 99.9 5.1E-20 1.8E-24 208.8 26.7 317 88-419 1-528 (551)
88 3b6e_A Interferon-induced heli 99.8 1.8E-20 6.1E-25 185.8 13.8 160 87-256 29-216 (216)
89 4a15_A XPD helicase, ATP-depen 99.8 3.4E-18 1.2E-22 195.6 25.0 320 91-419 3-581 (620)
90 2rrd_A BLM HRDC domain, HRDC d 99.8 1.7E-19 5.7E-24 154.8 6.7 83 569-657 16-100 (101)
91 2fz4_A DNA repair protein RAD2 99.8 1.7E-18 6E-23 174.7 15.3 138 91-260 93-231 (237)
92 2kv2_A Bloom syndrome protein; 99.8 4.9E-19 1.7E-23 147.8 6.6 78 573-656 5-84 (85)
93 1rif_A DAR protein, DNA helica 99.8 3.2E-18 1.1E-22 177.5 13.3 145 91-261 113-266 (282)
94 2rhf_A DNA helicase RECQ; HRDC 99.7 1.3E-18 4.3E-23 142.7 6.4 72 573-650 3-76 (77)
95 3llm_A ATP-dependent RNA helic 99.7 1.3E-17 4.3E-22 168.2 15.0 155 91-271 61-229 (235)
96 2e1f_A Werner syndrome ATP-dep 99.7 2.6E-18 8.8E-23 147.8 6.4 80 572-658 12-93 (103)
97 1wud_A ATP-dependent DNA helic 99.7 2.9E-18 9.8E-23 144.3 6.4 75 573-653 11-87 (89)
98 2dgz_A Werner syndrome protein 99.7 6.8E-18 2.3E-22 147.4 8.4 80 572-658 19-100 (113)
99 1z5z_A Helicase of the SNF2/RA 99.7 3.1E-17 1.1E-21 168.5 10.0 125 299-423 96-225 (271)
100 1yt3_A Ribonuclease D, RNAse D 99.1 7.7E-11 2.6E-15 126.6 7.7 96 573-676 212-311 (375)
101 3saf_A Exosome component 10; e 99.1 5.1E-11 1.7E-15 128.8 6.1 73 572-650 326-400 (428)
102 3cym_A Uncharacterized protein 99.1 2.2E-10 7.4E-15 125.1 9.1 144 498-650 132-324 (440)
103 2hbj_A Exosome complex exonucl 99.0 1.4E-10 4.8E-15 125.5 6.6 71 573-649 311-383 (410)
104 3aaf_A Werner syndrome ATP-dep 98.3 8.3E-07 2.8E-11 80.1 6.6 61 476-539 12-85 (134)
105 1w36_D RECD, exodeoxyribonucle 98.3 2E-06 6.9E-11 98.0 11.3 76 78-153 136-218 (608)
106 4b3f_X DNA-binding protein smu 97.9 5.4E-05 1.8E-09 87.1 13.3 71 91-161 189-263 (646)
107 2gk6_A Regulator of nonsense t 97.9 6.8E-05 2.3E-09 85.8 13.6 73 89-161 178-254 (624)
108 3lfu_A DNA helicase II; SF1 he 97.7 0.00085 2.9E-08 77.0 19.5 62 91-154 9-77 (647)
109 2wjy_A Regulator of nonsense t 97.7 0.00016 5.3E-09 84.7 13.1 72 90-161 355-430 (800)
110 2xzl_A ATP-dependent helicase 97.7 0.00015 5.1E-09 85.0 12.8 72 90-161 359-434 (802)
111 1d8b_A SGS1 RECQ helicase; fiv 97.3 0.00035 1.2E-08 55.4 5.7 56 577-638 8-65 (81)
112 3upu_A ATP-dependent DNA helic 97.2 0.00096 3.3E-08 73.3 9.6 65 87-151 21-94 (459)
113 3e1s_A Exodeoxyribonuclease V, 97.0 0.00086 2.9E-08 75.6 7.3 61 91-151 189-252 (574)
114 1uaa_A REP helicase, protein ( 96.8 0.022 7.7E-07 65.5 17.3 62 91-154 2-70 (673)
115 3hgt_A HDA1 complex subunit 3; 96.6 0.01 3.5E-07 61.1 10.9 126 301-431 111-246 (328)
116 3ec2_A DNA replication protein 96.3 0.038 1.3E-06 51.8 12.7 31 93-123 16-55 (180)
117 2o0j_A Terminase, DNA packagin 96.1 0.093 3.2E-06 55.7 15.4 63 91-153 163-230 (385)
118 3te6_A Regulatory protein SIR3 95.6 0.068 2.3E-06 55.2 11.5 18 106-123 45-62 (318)
119 3cpe_A Terminase, DNA packagin 95.3 0.19 6.6E-06 56.6 15.0 64 91-154 163-231 (592)
120 3vkw_A Replicase large subunit 95.2 0.037 1.3E-06 59.6 8.2 44 109-154 164-207 (446)
121 2b8t_A Thymidine kinase; deoxy 94.8 0.061 2.1E-06 52.6 7.7 36 106-141 12-50 (223)
122 2hjv_A ATP-dependent RNA helic 94.7 0.32 1.1E-05 44.6 12.3 77 130-219 34-110 (163)
123 1g5t_A COB(I)alamin adenosyltr 94.7 0.13 4.4E-06 49.0 9.5 33 106-138 28-63 (196)
124 2orw_A Thymidine kinase; TMTK, 94.7 0.12 4.2E-06 48.8 9.4 37 105-141 2-41 (184)
125 2zpa_A Uncharacterized protein 94.6 0.073 2.5E-06 60.2 8.8 114 91-259 175-290 (671)
126 4etp_A Kinesin-like protein KA 94.4 0.18 6.3E-06 53.7 11.0 26 99-124 132-159 (403)
127 1a5t_A Delta prime, HOLB; zinc 94.4 0.094 3.2E-06 54.6 8.6 33 92-124 3-42 (334)
128 2chg_A Replication factor C sm 94.3 0.61 2.1E-05 44.2 13.7 17 107-123 39-55 (226)
129 3co5_A Putative two-component 94.0 0.17 5.8E-06 45.4 8.4 21 104-124 25-45 (143)
130 2cvh_A DNA repair and recombin 93.9 0.25 8.5E-06 47.4 10.0 33 106-138 20-52 (220)
131 1l8q_A Chromosomal replication 93.8 0.22 7.5E-06 51.4 10.1 18 107-124 38-55 (324)
132 1jbk_A CLPB protein; beta barr 93.5 0.37 1.3E-05 44.6 10.3 18 106-123 43-60 (195)
133 2qby_B CDC6 homolog 3, cell di 93.5 0.42 1.4E-05 50.2 11.8 23 517-539 316-338 (384)
134 2p65_A Hypothetical protein PF 93.5 0.12 4.1E-06 47.9 6.6 18 106-123 43-60 (187)
135 2rb4_A ATP-dependent RNA helic 93.4 0.24 8.4E-06 46.0 8.7 75 131-218 34-108 (175)
136 3syl_A Protein CBBX; photosynt 93.4 0.29 9.9E-06 49.9 10.0 18 107-124 68-85 (309)
137 1gm5_A RECG; helicase, replica 93.3 0.21 7.3E-06 58.0 9.8 80 314-393 416-500 (780)
138 4a1f_A DNAB helicase, replicat 93.2 0.22 7.6E-06 51.8 8.8 146 106-256 46-205 (338)
139 3vfd_A Spastin; ATPase, microt 93.2 0.42 1.4E-05 50.7 11.2 20 106-125 148-167 (389)
140 2v1u_A Cell division control p 93.1 0.57 2E-05 49.0 12.0 59 480-538 290-349 (387)
141 3u06_A Protein claret segregat 93.1 0.43 1.5E-05 51.0 10.9 26 98-123 129-156 (412)
142 2kjq_A DNAA-related protein; s 93.0 0.33 1.1E-05 44.0 8.6 19 105-123 35-53 (149)
143 3bos_A Putative DNA replicatio 93.0 0.51 1.7E-05 45.6 10.7 18 106-123 52-69 (242)
144 2q6t_A DNAB replication FORK h 92.9 0.54 1.8E-05 50.9 11.7 125 99-226 189-324 (444)
145 1pjr_A PCRA; DNA repair, DNA r 92.9 0.15 5E-06 59.2 7.5 62 91-154 11-79 (724)
146 2p6n_A ATP-dependent RNA helic 92.8 0.64 2.2E-05 44.0 10.8 89 116-218 39-128 (191)
147 1njg_A DNA polymerase III subu 92.8 0.54 1.9E-05 45.2 10.6 16 108-123 47-62 (250)
148 1sxj_A Activator 1 95 kDa subu 92.7 0.62 2.1E-05 51.5 12.1 44 211-258 147-190 (516)
149 1fnn_A CDC6P, cell division co 92.7 0.95 3.3E-05 47.4 13.1 61 479-539 287-350 (389)
150 1v5w_A DMC1, meiotic recombina 92.7 0.62 2.1E-05 48.5 11.4 106 99-225 110-232 (343)
151 1t5i_A C_terminal domain of A 92.6 0.37 1.3E-05 44.7 8.6 123 130-271 30-153 (172)
152 1fuk_A Eukaryotic initiation f 92.6 0.31 1.1E-05 44.7 8.0 76 130-218 29-104 (165)
153 1d2n_A N-ethylmaleimide-sensit 92.4 0.38 1.3E-05 48.1 9.1 19 107-125 65-83 (272)
154 1xx6_A Thymidine kinase; NESG, 92.3 0.41 1.4E-05 45.5 8.6 36 106-141 8-46 (191)
155 3h4m_A Proteasome-activating n 92.3 0.45 1.6E-05 47.8 9.5 20 105-124 50-69 (285)
156 2qz4_A Paraplegin; AAA+, SPG7, 92.3 0.56 1.9E-05 46.3 10.0 19 106-124 39-57 (262)
157 3eie_A Vacuolar protein sortin 92.2 0.61 2.1E-05 48.0 10.6 20 106-125 51-70 (322)
158 3eaq_A Heat resistant RNA depe 92.2 0.39 1.3E-05 46.3 8.5 61 129-191 29-89 (212)
159 3pvs_A Replication-associated 92.1 0.22 7.6E-06 54.0 7.3 18 108-125 52-69 (447)
160 2dr3_A UPF0273 protein PH0284; 92.1 1.5 5.1E-05 42.6 12.9 51 105-156 22-75 (247)
161 1n0w_A DNA repair protein RAD5 92.0 1.3 4.4E-05 43.0 12.2 20 105-124 23-42 (243)
162 2qby_A CDC6 homolog 1, cell di 91.9 0.41 1.4E-05 50.1 9.0 60 480-539 286-347 (386)
163 3u4q_A ATP-dependent helicase/ 91.8 0.2 7E-06 61.5 7.3 61 91-153 10-79 (1232)
164 2w58_A DNAI, primosome compone 91.7 0.53 1.8E-05 44.5 8.8 17 107-123 55-71 (202)
165 2j9r_A Thymidine kinase; TK1, 91.7 0.43 1.5E-05 46.0 7.9 37 106-142 28-67 (214)
166 2jgn_A DBX, DDX3, ATP-dependen 91.6 0.36 1.2E-05 45.4 7.4 59 130-190 45-103 (185)
167 2z43_A DNA repair and recombin 91.6 0.64 2.2E-05 48.0 9.9 106 99-225 95-216 (324)
168 2r6a_A DNAB helicase, replicat 91.6 0.43 1.5E-05 51.9 8.9 125 99-226 192-327 (454)
169 1xp8_A RECA protein, recombina 91.5 1.5 5.2E-05 46.0 12.8 89 106-225 74-165 (366)
170 3kl4_A SRP54, signal recogniti 91.5 1.8 6.2E-05 46.4 13.5 52 107-158 98-155 (433)
171 3oiy_A Reverse gyrase helicase 91.5 0.32 1.1E-05 51.9 7.7 79 314-392 63-148 (414)
172 3bh0_A DNAB-like replicative h 91.4 0.49 1.7E-05 48.7 8.7 115 106-226 68-195 (315)
173 3cf0_A Transitional endoplasmi 91.2 1.5 5E-05 44.6 12.0 20 106-125 49-68 (301)
174 1xwi_A SKD1 protein; VPS4B, AA 91.2 0.62 2.1E-05 48.0 9.2 18 107-124 46-63 (322)
175 3u61_B DNA polymerase accessor 91.1 1.1 3.7E-05 46.0 11.0 15 211-225 104-118 (324)
176 3b9p_A CG5977-PA, isoform A; A 91.1 1.1 3.7E-05 45.3 10.9 19 106-124 54-72 (297)
177 3dm5_A SRP54, signal recogniti 91.1 5.9 0.0002 42.5 16.9 52 107-158 101-158 (443)
178 2z4s_A Chromosomal replication 90.7 0.8 2.7E-05 49.5 9.9 18 107-124 131-148 (440)
179 4b4t_J 26S protease regulatory 90.3 1.8 6.1E-05 45.9 11.9 19 106-124 182-200 (405)
180 2qp9_X Vacuolar protein sortin 90.3 0.84 2.9E-05 47.7 9.4 20 106-125 84-103 (355)
181 1sxj_D Activator 1 41 kDa subu 90.3 1.7 5.8E-05 44.8 11.7 17 107-123 59-75 (353)
182 1w5s_A Origin recognition comp 90.2 1.3 4.3E-05 46.9 10.8 61 479-539 307-370 (412)
183 2zan_A Vacuolar protein sortin 90.1 1.1 3.9E-05 48.3 10.4 20 106-125 167-186 (444)
184 3i32_A Heat resistant RNA depe 89.8 1.2 4E-05 45.5 9.7 75 130-217 27-101 (300)
185 2i1q_A DNA repair and recombin 89.6 1.4 4.9E-05 45.2 10.3 106 99-225 86-217 (322)
186 1iqp_A RFCS; clamp loader, ext 89.2 1.5 5.1E-05 44.6 10.1 17 108-124 48-64 (327)
187 1w4r_A Thymidine kinase; type 89.1 1.5 5.3E-05 41.5 9.2 34 106-140 20-57 (195)
188 2i4i_A ATP-dependent RNA helic 89.1 2 6.8E-05 45.4 11.4 75 131-218 276-350 (417)
189 3pey_A ATP-dependent RNA helic 88.9 1.7 6E-05 45.2 10.7 79 131-222 243-321 (395)
190 1hv8_A Putative ATP-dependent 88.8 3.5 0.00012 42.4 12.8 76 131-219 238-313 (367)
191 1jr3_A DNA polymerase III subu 88.8 0.84 2.9E-05 47.6 8.0 16 109-124 41-56 (373)
192 2gno_A DNA polymerase III, gam 88.6 1.6 5.4E-05 44.6 9.7 43 210-258 80-122 (305)
193 3t15_A Ribulose bisphosphate c 88.6 1.2 4.2E-05 45.1 8.8 18 107-124 37-54 (293)
194 2w0m_A SSO2452; RECA, SSPF, un 88.5 3.9 0.00013 39.0 12.1 50 105-155 22-74 (235)
195 2zr9_A Protein RECA, recombina 88.5 2.2 7.6E-05 44.4 10.9 34 106-139 61-97 (349)
196 3hr8_A Protein RECA; alpha and 88.4 2.4 8.1E-05 44.3 11.0 89 106-225 61-152 (356)
197 2d7d_A Uvrabc system protein B 88.2 4.6 0.00016 45.9 14.1 81 130-223 444-524 (661)
198 2j37_W Signal recognition part 88.1 3.1 0.00011 45.5 12.2 51 108-158 103-159 (504)
199 2eyq_A TRCF, transcription-rep 87.9 2.1 7.2E-05 52.1 11.6 76 314-389 651-731 (1151)
200 3bgw_A DNAB-like replicative h 87.9 5.1 0.00017 43.2 13.6 121 99-226 186-324 (444)
201 1sxj_B Activator 1 37 kDa subu 87.8 2.8 9.6E-05 42.4 11.1 17 108-124 44-60 (323)
202 1u94_A RECA protein, recombina 87.6 2.5 8.5E-05 44.2 10.5 34 106-139 63-99 (356)
203 2orv_A Thymidine kinase; TP4A 87.4 1 3.4E-05 44.0 6.8 37 105-141 18-57 (234)
204 4b4t_H 26S protease regulatory 87.4 2.4 8.1E-05 45.7 10.3 19 106-124 243-261 (467)
205 3pfi_A Holliday junction ATP-d 87.3 1.1 3.7E-05 46.2 7.6 18 107-124 56-73 (338)
206 3hu3_A Transitional endoplasmi 87.1 1.5 5.3E-05 47.9 9.0 20 106-125 238-257 (489)
207 3io5_A Recombination and repai 86.8 1.4 4.8E-05 45.2 7.8 89 108-225 30-124 (333)
208 4b4t_K 26S protease regulatory 86.8 3.9 0.00013 43.8 11.6 19 107-125 207-225 (428)
209 3cmu_A Protein RECA, recombina 86.5 1.2 4.2E-05 56.4 8.6 95 100-225 1415-1518(2050)
210 2ffh_A Protein (FFH); SRP54, s 86.5 5.4 0.00018 42.7 12.6 54 105-158 97-156 (425)
211 1sxj_C Activator 1 40 kDa subu 86.4 2.5 8.6E-05 43.6 9.8 16 109-124 49-64 (340)
212 3hjh_A Transcription-repair-co 86.4 2.9 9.9E-05 45.6 10.6 90 105-196 13-115 (483)
213 3e2i_A Thymidine kinase; Zn-bi 86.2 1.1 3.7E-05 43.3 6.2 38 105-142 27-67 (219)
214 3pxi_A Negative regulator of g 86.2 4.2 0.00014 47.0 12.6 17 108-124 523-539 (758)
215 3fht_A ATP-dependent RNA helic 86.2 1.7 5.7E-05 45.8 8.5 75 131-218 266-340 (412)
216 2oca_A DAR protein, ATP-depend 86.2 5.2 0.00018 43.6 12.8 98 131-246 347-444 (510)
217 1yt3_A Ribonuclease D, RNAse D 85.9 0.56 1.9E-05 49.6 4.5 72 573-648 302-373 (375)
218 1hqc_A RUVB; extended AAA-ATPa 85.8 1.1 3.7E-05 45.8 6.6 19 106-124 38-56 (324)
219 1xti_A Probable ATP-dependent 85.7 2 7E-05 44.8 8.9 78 130-220 249-326 (391)
220 4ddu_A Reverse gyrase; topoiso 85.7 0.94 3.2E-05 54.8 6.8 78 314-392 120-205 (1104)
221 1s2m_A Putative ATP-dependent 85.4 2 6.9E-05 45.1 8.7 75 131-218 258-332 (400)
222 1cr0_A DNA primase/helicase; R 85.3 9.2 0.00031 38.3 13.2 35 105-139 34-72 (296)
223 1wp9_A ATP-dependent RNA helic 84.8 4.6 0.00016 43.0 11.4 78 130-220 360-445 (494)
224 1oyw_A RECQ helicase, ATP-depe 84.7 2.1 7.3E-05 47.2 8.7 76 130-218 235-310 (523)
225 2v1x_A ATP-dependent DNA helic 84.5 2.8 9.7E-05 47.0 9.7 75 130-217 266-340 (591)
226 1qvr_A CLPB protein; coiled co 84.4 4.1 0.00014 47.9 11.4 18 107-124 192-209 (854)
227 2j0s_A ATP-dependent RNA helic 84.2 2.3 7.9E-05 44.8 8.5 75 131-218 276-350 (410)
228 2zts_A Putative uncharacterize 84.1 0.36 1.2E-05 47.2 1.9 49 106-155 30-82 (251)
229 1t6n_A Probable ATP-dependent 84.1 2.8 9.6E-05 39.9 8.3 74 315-391 82-166 (220)
230 2ehv_A Hypothetical protein PH 84.0 2.7 9.3E-05 40.8 8.3 34 105-138 29-66 (251)
231 1j8m_F SRP54, signal recogniti 83.9 7.6 0.00026 39.3 11.8 43 106-148 98-145 (297)
232 3lda_A DNA repair protein RAD5 83.9 8.9 0.0003 40.6 12.8 26 99-124 166-196 (400)
233 2fna_A Conserved hypothetical 83.7 16 0.00054 37.1 14.6 54 478-540 288-341 (357)
234 1r6b_X CLPA protein; AAA+, N-t 83.5 0.97 3.3E-05 52.5 5.5 19 106-124 207-225 (758)
235 2xxa_A Signal recognition part 83.5 5.3 0.00018 42.8 10.9 41 108-148 102-148 (433)
236 3cmw_A Protein RECA, recombina 83.4 5.2 0.00018 50.1 12.0 96 99-225 719-823 (1706)
237 3fe2_A Probable ATP-dependent 83.0 2.9 0.0001 40.7 8.0 73 314-390 101-183 (242)
238 3n70_A Transport activator; si 82.8 0.82 2.8E-05 40.9 3.6 21 105-125 23-43 (145)
239 2ce7_A Cell division protein F 82.7 3 0.0001 45.3 8.6 18 107-124 50-67 (476)
240 3e70_C DPA, signal recognition 82.1 15 0.00051 37.7 13.3 53 212-267 211-263 (328)
241 2db3_A ATP-dependent RNA helic 81.9 3.1 0.00011 44.6 8.4 75 131-218 300-374 (434)
242 1q57_A DNA primase/helicase; d 81.8 11 0.00038 41.1 13.0 115 106-225 242-367 (503)
243 2yjt_D ATP-dependent RNA helic 82.6 0.28 9.6E-06 45.4 0.0 58 131-190 30-87 (170)
244 1e9r_A Conjugal transfer prote 81.8 0.88 3E-05 49.0 3.9 41 105-145 52-95 (437)
245 3ber_A Probable ATP-dependent 81.7 7.1 0.00024 38.1 10.4 72 314-389 110-192 (249)
246 1vma_A Cell division protein F 80.9 8.9 0.0003 39.0 11.0 53 106-158 104-162 (306)
247 1c4o_A DNA nucleotide excision 80.8 5.4 0.00019 45.3 10.3 81 130-223 438-518 (664)
248 1pzn_A RAD51, DNA repair and r 80.3 6.1 0.00021 41.0 9.7 41 99-139 119-173 (349)
249 3cmu_A Protein RECA, recombina 79.8 10 0.00036 48.2 12.9 96 99-225 370-474 (2050)
250 3cym_A Uncharacterized protein 79.2 1.9 6.6E-05 46.4 5.5 70 573-648 361-435 (440)
251 2px0_A Flagellar biosynthesis 78.8 16 0.00055 36.8 12.1 20 105-124 104-123 (296)
252 3cf2_A TER ATPase, transitiona 78.8 8.8 0.0003 44.5 11.1 61 63-125 470-530 (806)
253 3hws_A ATP-dependent CLP prote 78.7 5.3 0.00018 41.5 8.7 21 105-125 50-70 (363)
254 3i5x_A ATP-dependent RNA helic 78.6 4.3 0.00015 45.0 8.4 77 131-220 339-418 (563)
255 3dmq_A RNA polymerase-associat 78.5 5.2 0.00018 47.7 9.5 82 130-222 502-584 (968)
256 2oxc_A Probable ATP-dependent 78.5 3.3 0.00011 39.9 6.6 71 314-389 91-172 (230)
257 3sqw_A ATP-dependent RNA helic 78.5 4.3 0.00015 45.3 8.4 78 131-221 288-368 (579)
258 4a74_A DNA repair and recombin 78.1 6.2 0.00021 37.6 8.4 20 105-124 24-43 (231)
259 1ls1_A Signal recognition part 77.3 44 0.0015 33.5 14.8 34 105-138 97-133 (295)
260 2yhs_A FTSY, cell division pro 76.4 14 0.00047 40.2 11.2 31 107-137 294-327 (503)
261 2qgz_A Helicase loader, putati 75.6 3.5 0.00012 42.0 6.1 18 106-123 152-169 (308)
262 3iuy_A Probable ATP-dependent 75.5 3.5 0.00012 39.6 5.8 72 314-389 93-173 (228)
263 2gxq_A Heat resistant RNA depe 75.3 6.1 0.00021 37.0 7.3 73 314-390 71-151 (207)
264 1vec_A ATP-dependent RNA helic 75.0 6.6 0.00023 36.7 7.5 72 314-389 70-152 (206)
265 3b85_A Phosphate starvation-in 74.6 3 0.0001 39.9 4.9 33 91-123 7-39 (208)
266 3eiq_A Eukaryotic initiation f 74.2 2.4 8.3E-05 44.6 4.6 60 131-192 280-339 (414)
267 1xjc_A MOBB protein homolog; s 73.1 9.3 0.00032 35.2 7.7 15 108-122 6-20 (169)
268 2oap_1 GSPE-2, type II secreti 73.0 2.3 7.9E-05 46.8 4.1 30 93-122 246-276 (511)
269 2p5t_B PEZT; postsegregational 72.8 37 0.0013 32.9 12.7 17 108-124 34-50 (253)
270 4b4t_M 26S protease regulatory 72.6 1.8 6.1E-05 46.5 3.0 19 106-124 215-233 (434)
271 3nwn_A Kinesin-like protein KI 72.4 2.6 8.8E-05 44.0 4.1 26 99-124 96-123 (359)
272 1wrb_A DJVLGB; RNA helicase, D 72.4 7 0.00024 38.1 7.2 72 314-389 99-180 (253)
273 2v6i_A RNA helicase; membrane, 71.8 5.8 0.0002 42.5 6.9 56 131-192 171-226 (431)
274 1p9r_A General secretion pathw 71.7 3.3 0.00011 44.2 4.8 31 92-122 151-183 (418)
275 3bor_A Human initiation factor 71.6 5.4 0.00018 38.6 6.1 73 314-389 97-179 (237)
276 2r44_A Uncharacterized protein 71.4 3.9 0.00013 41.8 5.2 23 102-124 42-64 (331)
277 3m9w_A D-xylose-binding peripl 71.2 83 0.0028 31.0 16.8 185 141-341 18-213 (313)
278 1bg2_A Kinesin; motor protein, 71.0 2.9 9.8E-05 43.1 4.0 26 99-124 69-96 (325)
279 2og2_A Putative signal recogni 70.5 23 0.00079 36.8 10.9 33 106-138 157-192 (359)
280 3hcw_A Maltose operon transcri 70.5 84 0.0029 30.7 16.6 179 142-341 29-217 (295)
281 1t5c_A CENP-E protein, centrom 70.5 2.8 9.4E-05 43.7 3.8 26 99-124 69-96 (349)
282 3ly5_A ATP-dependent RNA helic 70.2 9.4 0.00032 37.6 7.6 72 314-389 125-207 (262)
283 1v8k_A Kinesin-like protein KI 70.1 2.9 0.0001 44.4 3.9 26 99-124 146-173 (410)
284 3b6u_A Kinesin-like protein KI 70.0 3.2 0.00011 43.6 4.1 26 99-124 93-120 (372)
285 3dc4_A Kinesin-like protein NO 69.7 2.9 9.8E-05 43.4 3.7 25 99-123 86-112 (344)
286 3gbj_A KIF13B protein; kinesin 69.5 3.3 0.00011 43.2 4.1 26 99-124 84-111 (354)
287 1rj9_A FTSY, signal recognitio 69.3 20 0.00067 36.3 9.9 32 106-137 102-136 (304)
288 2vvg_A Kinesin-2; motor protei 69.2 3.3 0.00011 43.1 4.0 25 99-123 81-107 (350)
289 2y65_A Kinesin, kinesin heavy 69.2 3.3 0.00011 43.4 4.0 25 99-123 76-102 (365)
290 2nr8_A Kinesin-like protein KI 69.1 3.4 0.00012 43.1 4.1 26 99-124 95-122 (358)
291 3hix_A ALR3790 protein; rhodan 68.9 3.6 0.00012 34.4 3.6 40 311-350 48-88 (106)
292 1x88_A Kinesin-like protein KI 68.8 2.8 9.5E-05 43.8 3.4 26 99-124 80-107 (359)
293 2h58_A Kinesin-like protein KI 68.7 3.4 0.00012 42.6 4.0 27 98-124 71-99 (330)
294 2zfi_A Kinesin-like protein KI 68.6 3.1 0.0001 43.6 3.7 26 99-124 81-108 (366)
295 4a14_A Kinesin, kinesin-like p 68.5 3.4 0.00012 42.9 4.0 25 99-123 75-101 (344)
296 1gmx_A GLPE protein; transfera 68.3 6 0.0002 33.1 4.9 45 305-350 49-94 (108)
297 1goj_A Kinesin, kinesin heavy 68.0 3.3 0.00011 43.2 3.7 26 99-124 72-99 (355)
298 1yks_A Genome polyprotein [con 67.8 3.6 0.00012 44.2 4.2 56 131-192 177-232 (440)
299 3lre_A Kinesin-like protein KI 67.6 3.3 0.00011 43.1 3.7 26 99-124 97-124 (355)
300 2wbe_C Bipolar kinesin KRP-130 67.4 3.1 0.00011 43.7 3.4 26 99-124 92-119 (373)
301 3nbx_X ATPase RAVA; AAA+ ATPas 67.2 3 0.0001 45.7 3.3 28 98-125 33-60 (500)
302 4b4t_L 26S protease subunit RP 66.9 3.9 0.00013 43.9 4.1 18 107-124 216-233 (437)
303 3cmw_A Protein RECA, recombina 66.8 9 0.00031 48.1 7.8 97 99-226 1418-1523(1706)
304 3b9q_A Chloroplast SRP recepto 66.6 27 0.00094 35.2 10.3 34 105-138 99-135 (302)
305 3mwy_W Chromo domain-containin 66.5 42 0.0014 38.8 13.2 128 131-274 572-703 (800)
306 3cob_A Kinesin heavy chain-lik 66.4 3 0.0001 43.7 3.0 26 99-124 71-98 (369)
307 1kgd_A CASK, peripheral plasma 66.1 2.3 7.9E-05 39.4 1.9 20 105-124 4-23 (180)
308 2r8r_A Sensor protein; KDPD, P 66.1 51 0.0017 31.7 11.5 17 108-124 8-24 (228)
309 2heh_A KIF2C protein; kinesin, 65.9 3.7 0.00013 43.3 3.6 26 99-124 126-153 (387)
310 1ofh_A ATP-dependent HSL prote 65.9 6.8 0.00023 39.2 5.6 19 106-124 50-68 (310)
311 2pl3_A Probable ATP-dependent 65.7 7 0.00024 37.6 5.5 55 314-373 96-154 (236)
312 2bjv_A PSP operon transcriptio 65.5 3.9 0.00013 40.3 3.6 21 105-125 28-48 (265)
313 3gk5_A Uncharacterized rhodane 65.5 3.7 0.00013 34.5 3.0 38 313-350 53-90 (108)
314 2owm_A Nckin3-434, related to 65.2 3.8 0.00013 44.0 3.6 26 99-124 128-155 (443)
315 3t0q_A AGR253WP; kinesin, alph 65.1 3.1 0.00011 43.3 2.8 26 99-124 77-104 (349)
316 2gza_A Type IV secretion syste 65.0 3.8 0.00013 42.8 3.5 21 103-123 172-192 (361)
317 2v9p_A Replication protein E1; 64.9 3.6 0.00012 41.9 3.3 34 105-139 125-159 (305)
318 3dr5_A Putative O-methyltransf 64.7 95 0.0032 29.3 13.4 128 86-223 31-166 (221)
319 3jy6_A Transcriptional regulat 64.6 1E+02 0.0035 29.6 20.6 179 141-341 23-206 (276)
320 1f9v_A Kinesin-like protein KA 64.6 3.2 0.00011 43.2 2.8 26 99-124 76-103 (347)
321 3eme_A Rhodanese-like domain p 64.5 3.8 0.00013 33.9 2.8 38 313-350 54-91 (103)
322 1lv7_A FTSH; alpha/beta domain 64.5 5 0.00017 39.3 4.2 19 106-124 45-63 (257)
323 3iwh_A Rhodanese-like domain p 64.3 4.1 0.00014 34.1 3.0 37 313-349 54-90 (103)
324 3k4h_A Putative transcriptiona 64.1 1.1E+02 0.0037 29.6 18.1 180 142-341 30-217 (292)
325 3a8t_A Adenylate isopentenyltr 63.8 4 0.00014 42.2 3.3 18 107-124 41-58 (339)
326 1qde_A EIF4A, translation init 63.7 6.5 0.00022 37.4 4.7 71 314-389 81-161 (224)
327 3bfn_A Kinesin-like protein KI 63.5 3.1 0.00011 43.8 2.5 24 101-124 92-117 (388)
328 3egc_A Putative ribose operon 63.1 85 0.0029 30.5 13.3 181 141-341 24-211 (291)
329 3foj_A Uncharacterized protein 63.1 4 0.00014 33.7 2.6 38 313-350 54-91 (100)
330 1wv9_A Rhodanese homolog TT165 63.0 5.1 0.00017 32.6 3.3 37 313-350 52-88 (94)
331 3dkp_A Probable ATP-dependent 62.9 3.7 0.00013 39.9 2.8 74 314-390 97-182 (245)
332 4gl2_A Interferon-induced heli 62.9 4.8 0.00016 45.9 4.1 74 131-217 400-487 (699)
333 3huu_A Transcription regulator 62.8 1.2E+02 0.0041 29.7 16.0 173 142-341 44-227 (305)
334 3exa_A TRNA delta(2)-isopenten 62.8 4 0.00014 41.7 3.1 18 107-124 4-21 (322)
335 3gv0_A Transcriptional regulat 62.3 86 0.0029 30.5 13.1 180 142-341 27-213 (288)
336 3foz_A TRNA delta(2)-isopenten 62.2 4.8 0.00017 41.0 3.5 17 108-124 12-28 (316)
337 4b4t_I 26S protease regulatory 62.0 4.4 0.00015 43.2 3.3 19 106-124 216-234 (437)
338 1lvg_A Guanylate kinase, GMP k 61.8 4 0.00014 38.5 2.8 19 105-123 3-21 (198)
339 1u0j_A DNA replication protein 61.7 6.8 0.00023 39.0 4.4 43 78-124 74-122 (267)
340 2eyu_A Twitching motility prot 61.5 3.2 0.00011 41.3 2.0 20 104-123 23-42 (261)
341 2pt7_A CAG-ALFA; ATPase, prote 61.4 4.5 0.00015 41.7 3.3 20 104-123 169-188 (330)
342 3crm_A TRNA delta(2)-isopenten 61.3 14 0.00048 37.8 6.9 18 108-125 7-24 (323)
343 1z3i_X Similar to RAD54-like; 61.1 74 0.0025 35.7 13.6 97 114-220 395-495 (644)
344 3tau_A Guanylate kinase, GMP k 60.9 3.6 0.00012 39.1 2.3 20 105-124 7-26 (208)
345 1gku_B Reverse gyrase, TOP-RG; 60.8 9.5 0.00032 45.9 6.4 76 314-391 98-183 (1054)
346 2rep_A Kinesin-like protein KI 60.7 4 0.00014 42.9 2.7 25 100-124 108-134 (376)
347 3o1i_D Periplasmic protein TOR 60.6 1.3E+02 0.0043 29.3 17.0 187 141-351 21-230 (304)
348 2wv9_A Flavivirin protease NS2 59.9 8.5 0.00029 43.8 5.5 56 131-192 410-465 (673)
349 3d8b_A Fidgetin-like protein 1 59.7 6.9 0.00023 40.7 4.4 20 106-125 117-136 (357)
350 2va8_A SSO2462, SKI2-type heli 59.7 30 0.001 39.5 10.1 64 127-192 248-347 (715)
351 2qmh_A HPR kinase/phosphorylas 59.4 3.5 0.00012 39.2 1.8 18 106-123 34-51 (205)
352 1um8_A ATP-dependent CLP prote 59.3 7.5 0.00026 40.6 4.6 20 106-125 72-91 (376)
353 2jtq_A Phage shock protein E; 59.2 19 0.00064 28.3 6.0 37 313-350 39-76 (85)
354 1zu4_A FTSY; GTPase, signal re 59.2 1.5E+02 0.0053 29.8 15.6 32 106-137 105-139 (320)
355 3vaa_A Shikimate kinase, SK; s 59.1 5 0.00017 37.7 2.9 21 105-125 24-44 (199)
356 2fsx_A RV0390, COG0607: rhodan 58.9 14 0.00048 32.8 5.8 38 313-350 78-116 (148)
357 3rc3_A ATP-dependent RNA helic 58.9 18 0.00062 41.0 8.0 80 133-224 322-401 (677)
358 3g5j_A Putative ATP/GTP bindin 58.8 8.5 0.00029 33.2 4.2 37 314-350 87-125 (134)
359 1gvn_B Zeta; postsegregational 58.8 38 0.0013 33.8 9.6 17 108-124 35-51 (287)
360 1sky_E F1-ATPase, F1-ATP synth 58.7 1.2E+02 0.0041 32.5 13.9 26 98-123 140-168 (473)
361 3trf_A Shikimate kinase, SK; a 58.2 5.3 0.00018 36.8 2.8 20 106-125 5-24 (185)
362 1tq1_A AT5G66040, senescence-a 58.1 7.9 0.00027 33.6 3.8 39 312-350 79-118 (129)
363 2z0m_A 337AA long hypothetical 58.0 20 0.00069 35.9 7.6 71 131-218 220-290 (337)
364 1ry6_A Internal kinesin; kines 57.7 6.2 0.00021 41.1 3.5 23 102-124 78-103 (360)
365 3ney_A 55 kDa erythrocyte memb 57.4 4.1 0.00014 38.6 1.9 19 105-123 18-36 (197)
366 2v3c_C SRP54, signal recogniti 57.3 13 0.00046 39.7 6.2 32 107-138 100-134 (432)
367 3uk6_A RUVB-like 2; hexameric 57.1 5.2 0.00018 41.4 2.9 19 107-125 71-89 (368)
368 3lw7_A Adenylate kinase relate 57.1 4.5 0.00015 36.4 2.1 17 108-124 3-19 (179)
369 3fmp_B ATP-dependent RNA helic 57.0 2.3 7.7E-05 46.2 0.0 58 132-191 334-391 (479)
370 3flh_A Uncharacterized protein 56.9 6 0.00021 34.1 2.8 39 312-350 68-108 (124)
371 1q0u_A Bstdead; DEAD protein, 56.7 6.5 0.00022 37.3 3.3 72 314-389 71-156 (219)
372 1qhx_A CPT, protein (chloramph 56.7 4.3 0.00015 37.1 1.9 20 106-125 3-22 (178)
373 3a00_A Guanylate kinase, GMP k 56.7 5.2 0.00018 37.1 2.5 17 107-123 2-18 (186)
374 3dbi_A Sugar-binding transcrip 56.6 1.6E+02 0.0055 29.3 19.9 182 141-341 79-267 (338)
375 1tf5_A Preprotein translocase 56.5 31 0.001 40.0 9.2 70 314-389 123-209 (844)
376 2ze6_A Isopentenyl transferase 56.4 4.6 0.00016 39.8 2.2 15 109-123 4-18 (253)
377 2fsf_A Preprotein translocase 56.2 30 0.001 40.0 9.0 69 314-388 114-199 (853)
378 1ojl_A Transcriptional regulat 56.0 6.1 0.00021 40.1 3.1 21 105-125 24-44 (304)
379 3tr0_A Guanylate kinase, GMP k 55.6 5 0.00017 37.5 2.3 20 105-124 6-25 (205)
380 1z6g_A Guanylate kinase; struc 55.4 5.8 0.0002 38.0 2.7 20 104-123 21-40 (218)
381 3tbk_A RIG-I helicase domain; 55.4 12 0.00041 40.8 5.6 71 315-389 52-133 (555)
382 2j41_A Guanylate kinase; GMP, 55.3 5.1 0.00017 37.5 2.2 20 105-124 5-24 (207)
383 1fuu_A Yeast initiation factor 55.1 2.5 8.6E-05 44.1 0.0 59 131-191 259-317 (394)
384 1ex7_A Guanylate kinase; subst 55.1 5.9 0.0002 37.1 2.6 17 107-123 2-18 (186)
385 1kag_A SKI, shikimate kinase I 54.9 11 0.00036 34.1 4.3 20 106-125 4-23 (173)
386 4ag6_A VIRB4 ATPase, type IV s 54.8 9.6 0.00033 40.0 4.5 38 105-142 34-74 (392)
387 2vhj_A Ntpase P4, P4; non- hyd 54.7 9 0.00031 39.3 4.0 33 106-138 123-155 (331)
388 1zp6_A Hypothetical protein AT 54.7 4.6 0.00016 37.3 1.8 20 105-124 8-27 (191)
389 2whx_A Serine protease/ntpase/ 54.5 17 0.0006 40.7 6.8 56 131-192 355-410 (618)
390 4a2p_A RIG-I, retinoic acid in 54.5 16 0.00055 39.8 6.5 72 315-390 55-137 (556)
391 2qor_A Guanylate kinase; phosp 54.5 6.1 0.00021 37.2 2.6 20 104-123 10-29 (204)
392 1qxn_A SUD, sulfide dehydrogen 54.2 9.3 0.00032 33.6 3.6 39 312-350 79-118 (137)
393 3ilm_A ALR3790 protein; rhodan 54.0 10 0.00035 33.5 3.9 40 311-350 52-92 (141)
394 4a2q_A RIG-I, retinoic acid in 53.8 21 0.00072 41.3 7.6 71 315-389 296-377 (797)
395 1qvr_A CLPB protein; coiled co 53.5 67 0.0023 37.5 11.9 17 108-124 590-606 (854)
396 1kht_A Adenylate kinase; phosp 53.2 5.7 0.0002 36.5 2.2 19 106-124 3-21 (192)
397 3jvv_A Twitching mobility prot 53.1 5.4 0.00018 41.6 2.1 19 105-123 122-140 (356)
398 3iij_A Coilin-interacting nucl 53.1 8.3 0.00028 35.2 3.3 21 105-125 10-30 (180)
399 2ewv_A Twitching motility prot 52.9 4.8 0.00016 42.3 1.7 19 105-123 135-153 (372)
400 3ice_A Transcription terminati 52.8 71 0.0024 33.6 10.5 27 98-124 163-192 (422)
401 2r62_A Cell division protease 52.4 5.4 0.00018 39.3 1.9 19 106-124 44-62 (268)
402 3d3q_A TRNA delta(2)-isopenten 52.4 8.7 0.0003 39.6 3.6 16 108-123 9-24 (340)
403 4fcw_A Chaperone protein CLPB; 51.9 8.5 0.00029 38.6 3.4 18 107-124 48-65 (311)
404 3eph_A TRNA isopentenyltransfe 51.7 8.8 0.0003 40.6 3.5 15 109-123 5-19 (409)
405 3qk7_A Transcriptional regulat 51.5 1.8E+02 0.0061 28.2 17.3 180 141-341 26-212 (294)
406 1y63_A LMAJ004144AAA protein; 51.4 6.5 0.00022 36.3 2.2 21 105-125 9-29 (184)
407 2zj8_A DNA helicase, putative 51.3 30 0.001 39.5 8.3 84 128-225 234-350 (720)
408 3nhv_A BH2092 protein; alpha-b 51.2 9 0.00031 34.0 3.1 38 313-350 70-109 (144)
409 1z5z_A Helicase of the SNF2/RA 51.2 53 0.0018 32.4 9.1 80 114-194 92-175 (271)
410 2k0z_A Uncharacterized protein 51.1 13 0.00046 31.0 4.0 39 312-350 53-91 (110)
411 3kb2_A SPBC2 prophage-derived 50.9 6.6 0.00023 35.4 2.2 17 108-124 3-19 (173)
412 1ixz_A ATP-dependent metallopr 50.8 12 0.00041 36.4 4.2 18 107-124 50-67 (254)
413 1nkt_A Preprotein translocase 50.8 38 0.0013 39.4 8.8 69 314-388 151-236 (922)
414 1znw_A Guanylate kinase, GMP k 50.5 6.9 0.00024 37.0 2.3 22 102-123 16-37 (207)
415 1ly1_A Polynucleotide kinase; 50.3 6.8 0.00023 35.6 2.2 17 108-124 4-20 (181)
416 1vee_A Proline-rich protein fa 50.0 16 0.00055 31.8 4.5 37 314-350 73-110 (134)
417 2jlq_A Serine protease subunit 49.9 16 0.00053 39.3 5.3 55 131-191 188-242 (451)
418 2x8a_A Nuclear valosin-contain 49.9 13 0.00044 37.0 4.3 18 107-124 45-62 (274)
419 2c9o_A RUVB-like 1; hexameric 49.8 7.7 0.00026 41.8 2.8 19 106-124 63-81 (456)
420 2l5g_B Putative uncharacterize 49.5 47 0.0016 22.6 5.5 34 4-37 5-38 (42)
421 1g8p_A Magnesium-chelatase 38 49.5 8.7 0.0003 39.3 3.1 19 106-124 45-63 (350)
422 3fho_A ATP-dependent RNA helic 49.3 3.6 0.00012 45.1 0.0 75 131-218 357-431 (508)
423 4gp7_A Metallophosphoesterase; 49.3 6.2 0.00021 36.1 1.7 19 106-124 9-27 (171)
424 3nwj_A ATSK2; P loop, shikimat 49.3 11 0.00037 37.1 3.6 22 104-125 46-67 (250)
425 3g1w_A Sugar ABC transporter; 49.0 1.9E+02 0.0066 28.0 22.1 181 142-341 21-212 (305)
426 2p6r_A Afuhel308 helicase; pro 49.0 33 0.0011 39.0 8.1 63 128-192 239-331 (702)
427 2ipc_A Preprotein translocase 48.5 36 0.0012 39.7 8.0 55 314-374 119-177 (997)
428 2l82_A Designed protein OR32; 48.3 44 0.0015 27.7 6.4 49 319-367 6-54 (162)
429 4eun_A Thermoresistant glucoki 48.3 7.8 0.00027 36.3 2.3 20 105-124 28-47 (200)
430 1c9k_A COBU, adenosylcobinamid 48.2 10 0.00034 35.3 3.0 32 109-141 2-33 (180)
431 1tue_A Replication protein E1; 47.9 14 0.00046 35.3 3.8 43 78-123 29-75 (212)
432 2bdt_A BH3686; alpha-beta prot 47.8 15 0.00052 33.7 4.2 18 108-125 4-21 (189)
433 1s96_A Guanylate kinase, GMP k 47.4 8.1 0.00028 37.1 2.3 21 103-123 13-33 (219)
434 3tb6_A Arabinose metabolism tr 47.2 2E+02 0.0069 27.6 18.3 188 141-341 31-226 (298)
435 3fmo_B ATP-dependent RNA helic 47.2 14 0.00049 37.1 4.2 69 315-390 162-242 (300)
436 3ipz_A Monothiol glutaredoxin- 47.1 78 0.0027 26.2 8.3 57 314-370 16-78 (109)
437 1knq_A Gluconate kinase; ALFA/ 47.1 7 0.00024 35.5 1.7 19 106-124 8-26 (175)
438 1tf7_A KAIC; homohexamer, hexa 46.6 68 0.0023 35.0 9.9 49 106-155 281-332 (525)
439 3kjx_A Transcriptional regulat 46.5 2.3E+02 0.008 28.1 17.2 177 141-341 84-272 (344)
440 4h1g_A Maltose binding protein 46.5 13 0.00044 42.6 4.1 26 98-123 453-480 (715)
441 1iy2_A ATP-dependent metallopr 46.4 15 0.00051 36.3 4.2 18 107-124 74-91 (278)
442 2xau_A PRE-mRNA-splicing facto 46.3 17 0.00059 42.0 5.2 76 131-217 303-392 (773)
443 1g41_A Heat shock protein HSLU 46.3 16 0.00053 39.2 4.5 19 106-124 50-68 (444)
444 3lyl_A 3-oxoacyl-(acyl-carrier 46.2 1.1E+02 0.0037 29.1 10.4 87 105-193 4-92 (247)
445 3l6u_A ABC-type sugar transpor 46.2 2.1E+02 0.0071 27.5 17.0 179 142-340 25-219 (293)
446 1f2t_A RAD50 ABC-ATPase; DNA d 46.0 8.9 0.0003 34.3 2.2 16 108-123 25-40 (149)
447 3d1p_A Putative thiosulfate su 45.9 11 0.00036 33.1 2.6 38 313-350 89-127 (139)
448 2hhg_A Hypothetical protein RP 45.8 9.5 0.00032 33.4 2.3 37 314-350 85-122 (139)
449 1in4_A RUVB, holliday junction 45.6 11 0.00037 38.7 3.0 19 107-125 52-70 (334)
450 3jux_A Protein translocase sub 45.6 29 0.001 39.6 6.6 58 131-192 474-531 (822)
451 2r2a_A Uncharacterized protein 45.5 9.9 0.00034 35.9 2.5 17 108-124 7-23 (199)
452 2ykg_A Probable ATP-dependent 45.0 12 0.00041 42.5 3.5 75 131-218 398-485 (696)
453 3tqc_A Pantothenate kinase; bi 45.0 25 0.00084 35.9 5.6 15 109-123 95-109 (321)
454 3h1t_A Type I site-specific re 45.0 39 0.0013 37.4 7.7 80 131-221 439-526 (590)
455 4f4c_A Multidrug resistance pr 44.9 18 0.00061 44.6 5.3 20 105-124 1104-1123(1321)
456 4akg_A Glutathione S-transfera 44.5 12 0.00041 49.2 3.8 45 79-125 894-942 (2695)
457 3lnc_A Guanylate kinase, GMP k 44.5 6.8 0.00023 37.7 1.2 19 105-123 26-44 (231)
458 3k1j_A LON protease, ATP-depen 44.4 17 0.00058 40.7 4.6 27 99-125 53-79 (604)
459 1tev_A UMP-CMP kinase; ploop, 44.3 8.2 0.00028 35.5 1.7 19 106-124 3-21 (196)
460 3cm0_A Adenylate kinase; ATP-b 44.1 8.7 0.0003 35.2 1.9 21 105-125 3-23 (186)
461 3qf7_A RAD50; ABC-ATPase, ATPa 43.7 9.2 0.00032 39.9 2.2 16 108-123 25-40 (365)
462 3sju_A Keto reductase; short-c 43.4 1E+02 0.0035 30.1 9.9 89 103-193 21-111 (279)
463 3kta_A Chromosome segregation 43.3 15 0.00051 33.5 3.4 17 108-124 28-44 (182)
464 3t61_A Gluconokinase; PSI-biol 43.3 9.9 0.00034 35.5 2.1 18 107-124 19-36 (202)
465 3tjr_A Short chain dehydrogena 43.2 94 0.0032 30.8 9.7 88 104-193 29-118 (301)
466 2rhm_A Putative kinase; P-loop 43.0 11 0.00036 34.8 2.3 19 106-124 5-23 (193)
467 3f9v_A Minichromosome maintena 42.4 10 0.00035 42.4 2.4 17 108-124 329-345 (595)
468 2c95_A Adenylate kinase 1; tra 42.0 11 0.00039 34.6 2.3 20 105-124 8-27 (196)
469 3uie_A Adenylyl-sulfate kinase 41.9 12 0.0004 35.0 2.4 20 105-124 24-43 (200)
470 3zvl_A Bifunctional polynucleo 41.5 83 0.0029 33.1 9.3 16 109-124 261-276 (416)
471 3ucx_A Short chain dehydrogena 41.4 1.8E+02 0.0061 27.9 11.3 87 104-192 9-97 (264)
472 3hs3_A Ribose operon repressor 41.3 2.4E+02 0.0083 26.9 13.5 168 141-341 26-203 (277)
473 3c8u_A Fructokinase; YP_612366 41.3 9.3 0.00032 36.1 1.6 18 106-123 22-39 (208)
474 3auy_A DNA double-strand break 41.1 11 0.00038 39.3 2.3 16 108-123 27-42 (371)
475 1via_A Shikimate kinase; struc 41.1 15 0.00052 33.2 3.0 19 107-125 5-23 (175)
476 3m6a_A ATP-dependent protease 41.1 20 0.00067 39.6 4.4 20 106-125 108-127 (543)
477 3pxg_A Negative regulator of g 40.9 16 0.00055 39.4 3.6 19 106-124 201-219 (468)
478 2z83_A Helicase/nucleoside tri 40.9 11 0.00036 40.8 2.1 55 131-191 190-244 (459)
479 1urh_A 3-mercaptopyruvate sulf 40.8 43 0.0015 33.0 6.6 48 303-350 217-266 (280)
480 2iyv_A Shikimate kinase, SK; t 40.6 14 0.00047 33.8 2.6 18 107-124 3-20 (184)
481 2ius_A DNA translocase FTSK; n 40.6 11 0.00038 41.2 2.2 18 106-123 167-184 (512)
482 2jee_A YIIU; FTSZ, septum, coi 40.5 96 0.0033 24.5 7.0 13 33-45 59-71 (81)
483 1nks_A Adenylate kinase; therm 40.1 12 0.00042 34.2 2.2 16 108-123 3-18 (194)
484 3fb4_A Adenylate kinase; psych 40.0 13 0.00046 34.9 2.5 18 108-125 2-19 (216)
485 1cke_A CK, MSSA, protein (cyti 39.8 15 0.0005 34.9 2.8 19 107-125 6-24 (227)
486 3uug_A Multiple sugar-binding 39.8 2.8E+02 0.0095 27.1 15.8 191 142-341 20-229 (330)
487 3qiv_A Short-chain dehydrogena 39.5 1.2E+02 0.0042 28.8 9.7 88 104-193 7-96 (253)
488 1qf9_A UMP/CMP kinase, protein 39.5 13 0.00044 34.0 2.3 17 108-124 8-24 (194)
489 1zd8_A GTP:AMP phosphotransfer 39.5 13 0.00043 35.6 2.3 19 106-124 7-25 (227)
490 1nij_A Hypothetical protein YJ 39.3 19 0.00065 36.6 3.7 32 109-140 7-39 (318)
491 2yan_A Glutaredoxin-3; oxidore 39.2 1.2E+02 0.0041 24.6 8.2 57 314-370 15-77 (105)
492 3dl0_A Adenylate kinase; phosp 39.0 21 0.00072 33.5 3.8 18 108-125 2-19 (216)
493 1go3_F DNA-directed RNA polyme 39.0 18 0.00061 30.5 2.8 44 601-649 64-107 (107)
494 3rkr_A Short chain oxidoreduct 39.0 1E+02 0.0035 29.7 9.0 88 104-193 27-116 (262)
495 2bwj_A Adenylate kinase 5; pho 39.0 13 0.00045 34.3 2.3 20 105-124 11-30 (199)
496 3asz_A Uridine kinase; cytidin 38.9 13 0.00044 34.9 2.2 19 106-124 6-24 (211)
497 4akg_A Glutathione S-transfera 38.8 18 0.00063 47.5 4.2 20 104-123 1265-1284(2695)
498 3vkg_A Dynein heavy chain, cyt 38.8 15 0.00053 48.9 3.4 38 87-125 884-925 (3245)
499 3zyw_A Glutaredoxin-3; metal b 38.6 95 0.0033 25.8 7.5 56 314-369 14-75 (111)
500 4f4c_A Multidrug resistance pr 38.4 71 0.0024 39.3 9.2 20 105-124 443-462 (1321)
No 1
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=2e-82 Score=723.89 Aligned_cols=498 Identities=44% Similarity=0.785 Sum_probs=453.3
Q ss_pred CCCcccccccc-CCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhcCCeEEEEcc
Q 035988 61 SSSTAVENWSG-TFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSP 139 (692)
Q Consensus 61 ~~~~~~~~w~~-~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~~~~~lvi~P 139 (692)
+.+....+|.. .++|++.+.+.|++.|||..|||+|.++|+++++|+|++++||||+|||+||++|++...+++|||+|
T Consensus 13 ~~~~~~~~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~~g~~lVisP 92 (591)
T 2v1x_A 13 EYDSSPAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICP 92 (591)
T ss_dssp ---CCGGGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTSSSEEEEECS
T ss_pred CCCcchhccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHcCCcEEEEeC
Confidence 44666789988 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEe
Q 035988 140 LLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISID 219 (692)
Q Consensus 140 t~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVID 219 (692)
+++|+.|+++.++++|+++..++|+....+....+..+....+.++|+|+||++|..+..|.+.+.+...+.++++||||
T Consensus 93 ~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViD 172 (591)
T 2v1x_A 93 LISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVD 172 (591)
T ss_dssp CHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEE
Confidence 99999999999999999999999999988887777777544458999999999998766788888777778899999999
Q ss_pred CcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEeccCCCCcceEEEeeccCcchH
Q 035988 220 EAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKV 299 (692)
Q Consensus 220 EaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~ 299 (692)
||||+++||++|++.|..+..+...+|+.|+++||||+++.+..++..+++++.+..+..+++++|+.|.+.........
T Consensus 173 EAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~ 252 (591)
T 2v1x_A 173 EVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTED 252 (591)
T ss_dssp TGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTTEEEEEEECCSSHHH
T ss_pred CcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCcccEEEEEeCCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887766666
Q ss_pred HHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEecccccccc
Q 035988 300 VIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGI 379 (692)
Q Consensus 300 ~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GI 379 (692)
.+..+.+++.... .++++||||+|++.++.+++.|...|+.+..|||+|++++|..+++.|++|+++|||||++++|||
T Consensus 253 ~~~~l~~~l~~~~-~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GI 331 (591)
T 2v1x_A 253 FIEDIVKLINGRY-KGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGI 331 (591)
T ss_dssp HHHHHHHHHTTTT-TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTC
T ss_pred HHHHHHHHHHHhc-cCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCC
Confidence 7788888887543 678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHHHHHHHHhhhhhhhHhHHHHHHHhcCCccchHHHH
Q 035988 380 NKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFYENSGLQNLYDIVRYSQYPLHWNIEKV 459 (692)
Q Consensus 380 Dip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~crr~~l 459 (692)
|+|+|++||||++|.|+++|+||+|||||+|.+|.|++||++.|...++.++..+.....++..|+.||+++..|||..+
T Consensus 332 D~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Crr~~l 411 (591)
T 2v1x_A 332 DKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMVVMENVGQQKLYEMVSYCQNISKCRRVLM 411 (591)
T ss_dssp CCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHTTTSTTHHHHHHHHHHHHTCSSSCHHHHH
T ss_pred CcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHHhhhhhhHHHHHHHHHHHhcccccHHHHH
Confidence 99999999999999999999999999999999999999999999999999998877888999999999998899999999
Q ss_pred HhhhCCCc--ccccCCCc----------cchhHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhccc-------CCCcccC
Q 035988 460 RLVIFEKL--QQVNLFCM----------VVLAGHAQCIISLLQDIQDNNQRLTMLQLVDKMKIKLK-------EIDSDLK 520 (692)
Q Consensus 460 l~~f~~~~--~~C~~~Cd----------~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 520 (692)
++|||+.+ ..|.++|| .|+|.+|+.++++|.++.+.++++|+.+++|+|+|+.+ .-|++++
T Consensus 412 l~~f~e~~~~~~c~~~Cd~C~~~~~~~~~d~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 491 (591)
T 2v1x_A 412 AQHFDEVWNSEACNKMCDNCCKDSAFERKNITEYCRDLIKILKQAEELNEKLTPLKLIDSWMGKGAAKLRVAGVVAPTLP 491 (591)
T ss_dssp HHHHTCCC---CCCSCBHHHHCCCCEEEEECHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCSCGGGCCTTCCCCSCC
T ss_pred HHHcCCCCCccccCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHhcCCcccHHHHHHHHhCCCchHHHhcCCCcCcCC
Confidence 99999986 56755676 59999999999999988888999999999999999742 1278999
Q ss_pred HHHHHHHHHHHHHcCccc--------------ccc----ccCCCceeEEEEeecccc
Q 035988 521 REEIEQLVLQLIIDRVLV--------------RIG----PFSPGKKIIKLEISSVQK 559 (692)
Q Consensus 521 ~~~~~~~i~~l~~~~~l~--------------~~~----~~L~g~~~v~l~~~~~~~ 559 (692)
+.+|+++|++|+..|||. +.| ++|+|+.++.++++...+
T Consensus 492 ~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (591)
T 2v1x_A 492 REDLEKIIAHFLIQQYLKEDYSFTAYATISYLKIGPKANLLNNEAHAITMQVTKSTQ 548 (591)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEECSSCEEEEEEECGGGGGGGSTTCCCEEEEEC---
T ss_pred HHHHHHHHHHHHHcCCcEEecccCCCceeEEeeECHHHHHHhcCCceEEEEecCCCC
Confidence 999999999999999992 122 379999999999865544
No 2
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.4e-75 Score=660.82 Aligned_cols=467 Identities=38% Similarity=0.659 Sum_probs=421.5
Q ss_pred CCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHH
Q 035988 72 TFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMCL 151 (692)
Q Consensus 72 ~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~~~~~lvi~Pt~~L~~q~~~~l 151 (692)
.+++++.+.+.|++.|||..|||+|.++|+++++|+|++++||||+|||+||++|++...+.+|||+|+++|+.|+++.+
T Consensus 6 ~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~~g~~lvi~P~~aL~~q~~~~l 85 (523)
T 1oyw_A 6 VLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKDQVDQL 85 (523)
T ss_dssp CSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHSSSEEEEECSCHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHhCCCEEEECChHHHHHHHHHHH
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCc
Q 035988 152 AALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDF 231 (692)
Q Consensus 152 ~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~f 231 (692)
+.+|+++..++++....+....+..+..+ .++|+|+||+++... .+.+.+ ...++++|||||||++++||++|
T Consensus 86 ~~~gi~~~~l~~~~~~~~~~~~~~~~~~~--~~~ilv~Tpe~l~~~-~~~~~l----~~~~~~~vViDEaH~i~~~g~~f 158 (523)
T 1oyw_A 86 QANGVAAACLNSTQTREQQLEVMTGCRTG--QIRLLYIAPERLMLD-NFLEHL----AHWNPVLLAVDEAHCISQWGHDF 158 (523)
T ss_dssp HHTTCCEEEECTTSCHHHHHHHHHHHHHT--CCSEEEECHHHHTST-THHHHH----TTSCEEEEEESSGGGGCTTSSCC
T ss_pred HHcCCcEEEEeCCCCHHHHHHHHHHHhcC--CCCEEEECHHHHhCh-HHHHHH----hhCCCCEEEEeCccccCcCCCcc
Confidence 99999999999999888777777777766 799999999999643 343333 33689999999999999999999
Q ss_pred hHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEeccCCCCcceEEEeeccCcchHHHHHHHHHHHHh
Q 035988 232 RPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQES 311 (692)
Q Consensus 232 r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~l~~~l~~~ 311 (692)
++.|..+..+...+|+.|+++||||+++.+..++.+.+++..+..+..+++++++.+.+..... ....+.+++...
T Consensus 159 r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~~----~~~~l~~~l~~~ 234 (523)
T 1oyw_A 159 RPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFK----PLDQLMRYVQEQ 234 (523)
T ss_dssp CHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCTTEEEEEEECSS----HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCCceEEEEEeCCC----HHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999988888999999999998887543 356677888765
Q ss_pred CCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEEeC
Q 035988 312 YPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHS 391 (692)
Q Consensus 312 ~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~ 391 (692)
.++++||||+|++.++.+++.|+..|+.+..|||+|++++|..+++.|++|+.+|||||+++++|||+|++++|||++
T Consensus 235 --~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~ 312 (523)
T 1oyw_A 235 --RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFD 312 (523)
T ss_dssp --TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESS
T ss_pred --CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEEC
Confidence 778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHHHHHHHHhhh------hhhhHhHHHHHHHhcCCccchHHHHHhhhCC
Q 035988 392 LSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVFYE------NSGLQNLYDIVRYSQYPLHWNIEKVRLVIFE 465 (692)
Q Consensus 392 ~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~~~~l~~~~------~~~~~~l~~~~~~~~~~~~crr~~ll~~f~~ 465 (692)
+|.|+++|+||+|||||+|.+|.|++||++.|...++.++..+ .....++..|+.||+ +..|||..+++|||+
T Consensus 313 ~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~m~~~~~-~~~crr~~l~~~f~e 391 (523)
T 1oyw_A 313 IPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQGQLQDIERHKLNAMGAFAE-AQTCRRLVLLNYFGE 391 (523)
T ss_dssp CCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHHTSCCSHHHHHHHHHHHHHHHHHT-CSSCHHHHHHHHTTC
T ss_pred CCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHh-ccccHhhhhHhhcCC
Confidence 9999999999999999999999999999999999988888742 234567899999998 789999999999999
Q ss_pred CcccccCCCc--------cchhHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhcc--------------cCCCcccCHHH
Q 035988 466 KLQQVNLFCM--------VVLAGHAQCIISLLQDIQDNNQRLTMLQLVDKMKIKL--------------KEIDSDLKREE 523 (692)
Q Consensus 466 ~~~~C~~~Cd--------~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~ 523 (692)
.+...|++|| .|+|.+++.+++++.+ .+++++...++++++|+. .|.|+++++++
T Consensus 392 ~~~~~c~~cd~c~~~~~~~d~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (523)
T 1oyw_A 392 GRQEPCGNCDICLDPPKQYDGSTDAQIALSTIGR---VNQRFGMGYVVEVIRGANNQRIRDYGHDKLKVYGMGRDKSHEH 468 (523)
T ss_dssp CCCSCCSCBHHHHSCCCEEECHHHHHHHHHHHHH---TTTCCCHHHHHHHHHTCCCHHHHHHTGGGSTTTTTTTTSCHHH
T ss_pred CCCCCCCCCCCCCCCcccccchHHHHHHHHHHHH---hccCcCcchhHHHhcCCCcHhHHhhcccccccccccCCCCHHH
Confidence 9843337788 7889999999999864 578999999999999953 36789999999
Q ss_pred HHHHHHHHHHcCccc---------ccc----ccCCCceeEEEEee
Q 035988 524 IEQLVLQLIIDRVLV---------RIG----PFSPGKKIIKLEIS 555 (692)
Q Consensus 524 ~~~~i~~l~~~~~l~---------~~~----~~L~g~~~v~l~~~ 555 (692)
|+.++++|+..|||. ..+ .+|+|+.++.++.+
T Consensus 469 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (523)
T 1oyw_A 469 WVSVIRQLIHLGLVTQNIAQHSALQLTEAARPVLRGESSLQLAVP 513 (523)
T ss_dssp HHHHHHHHHHTTSEEEEGGGTTEEEECGGGHHHHHTSSCCEEECC
T ss_pred HHHHHHHHHHCCCceeccCCCCceeeCHHHHHHhcCCceEEEecc
Confidence 999999999999982 222 36999999999874
No 3
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.4e-52 Score=463.52 Aligned_cols=354 Identities=17% Similarity=0.240 Sum_probs=287.7
Q ss_pred CCccCCCCCccccccccCCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc----
Q 035988 55 PIQYGGSSSTAVENWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR---- 130 (692)
Q Consensus 55 ~~~~g~~~~~~~~~w~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~---- 130 (692)
....|.+.|.++.+|. .+++++.+.+.|.+ +||..|+|+|.++|+.+++|+|++++||||||||++|++|++..
T Consensus 44 ~~~~~~~~p~~~~~f~-~~~l~~~l~~~l~~-~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~ 121 (434)
T 2db3_A 44 VKVTGSDVPQPIQHFT-SADLRDIIIDNVNK-SGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLED 121 (434)
T ss_dssp EEEESSSCCCCCCCGG-GSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHS
T ss_pred eEecCCCCCCCcCChh-hcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhc
Confidence 3456778899999998 67899999999985 69999999999999999999999999999999999999998743
Q ss_pred -------CCeEEEEcccHHHHHHHHHHHHHc----CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHH
Q 035988 131 -------EGIALVVSPLLSLIQDQVMCLAAL----GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKR 199 (692)
Q Consensus 131 -------~~~~lvi~Pt~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~ 199 (692)
++++||++||++|+.|+++.++++ ++++..+.|+......... +. .+++|+|+||++|..
T Consensus 122 ~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~---~~~~Ivv~Tp~~l~~--- 192 (434)
T 2db3_A 122 PHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNEC---IT---RGCHVVIATPGRLLD--- 192 (434)
T ss_dssp CCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHH---HT---TCCSEEEECHHHHHH---
T ss_pred ccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHH---hh---cCCCEEEEChHHHHH---
Confidence 458999999999999999999986 4778888888776543322 22 278999999997753
Q ss_pred HHHHHH-hhhhcCCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEe
Q 035988 200 FMSKLE-KCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFV 278 (692)
Q Consensus 200 ~~~~l~-~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~ 278 (692)
.+. ....+.+++++||||||++.++| |.+.+..+.......++.++++||||++..+......++..+..+...
T Consensus 193 ---~l~~~~~~l~~~~~lVlDEah~~~~~g--f~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~ 267 (434)
T 2db3_A 193 ---FVDRTFITFEDTRFVVLDEADRMLDMG--FSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIG 267 (434)
T ss_dssp ---HHHTTSCCCTTCCEEEEETHHHHTSTT--THHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEES
T ss_pred ---HHHhCCcccccCCeEEEccHhhhhccC--cHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEec
Confidence 222 23456889999999999999998 999988754443346788999999999998887776666533222221
Q ss_pred cc-CCCCcceEEEeeccCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHH
Q 035988 279 ST-INRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKV 357 (692)
Q Consensus 279 ~~-~~r~~l~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~ 357 (692)
.. ....++...+.... ...+...+.+++... ..++||||++++.|+.+++.|...|+++..+||++++.+|..+
T Consensus 268 ~~~~~~~~i~~~~~~~~--~~~k~~~l~~~l~~~---~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~ 342 (434)
T 2db3_A 268 IVGGACSDVKQTIYEVN--KYAKRSKLIEILSEQ---ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQA 342 (434)
T ss_dssp STTCCCTTEEEEEEECC--GGGHHHHHHHHHHHC---CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHH
T ss_pred cccccccccceEEEEeC--cHHHHHHHHHHHHhC---CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHH
Confidence 11 11223332222222 234566777877764 3459999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCcEEEeccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCC-CHHHHHH
Q 035988 358 HMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPA-DVPRQSS 429 (692)
Q Consensus 358 ~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~-d~~~~~~ 429 (692)
++.|++|+.+|||||+++++|||+|++++||+||+|.++++|+||+||+||.|+.|.|++|+++. |......
T Consensus 343 l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~ 415 (434)
T 2db3_A 343 LRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAAD 415 (434)
T ss_dssp HHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHH
T ss_pred HHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999954 4443333
No 4
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.4e-50 Score=444.80 Aligned_cols=357 Identities=18% Similarity=0.217 Sum_probs=287.9
Q ss_pred cCCCCCccccccccCCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc-------
Q 035988 58 YGGSSSTAVENWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR------- 130 (692)
Q Consensus 58 ~g~~~~~~~~~w~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~------- 130 (692)
.|.+.|.++.+|. .+++++.+.+.|.. +||..|+|+|.++|+.++.|+|+++.||||+|||++|++|++..
T Consensus 6 ~~~~~p~~~~~f~-~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~ 83 (417)
T 2i4i_A 6 TGNNCPPHIESFS-DVEMGEIIMGNIEL-TRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPG 83 (417)
T ss_dssp ESTTCCCCCSSGG-GSCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCcCCcccCCHh-hCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhcccc
Confidence 4667888999998 67899999999985 69999999999999999999999999999999999999998743
Q ss_pred -----------------CCeEEEEcccHHHHHHHHHHHHHc----CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEe
Q 035988 131 -----------------EGIALVVSPLLSLIQDQVMCLAAL----GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYV 189 (692)
Q Consensus 131 -----------------~~~~lvi~Pt~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~ 189 (692)
.+++||++||++|+.|+++.++++ ++++..+.|+........ .+. .+++|+|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~---~~~~I~v~ 157 (417)
T 2i4i_A 84 EALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIR---DLE---RGCHLLVA 157 (417)
T ss_dssp HHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHH---HHT---TCCSEEEE
T ss_pred chhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHH---Hhh---CCCCEEEE
Confidence 157999999999999999999875 678888888876654322 222 26899999
Q ss_pred ChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHHHHhhCC--CCCEEEEecccchhhHHHHHH
Q 035988 190 TPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFP--DVPMMALTATATQKVQNDLME 267 (692)
Q Consensus 190 Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~--~~~~i~lSAT~~~~~~~~i~~ 267 (692)
||+++.. ++. .....+.++++|||||||++.+|+ |.+.+..+.......+ ..+++++|||++..+...+..
T Consensus 158 Tp~~l~~---~l~--~~~~~~~~~~~iViDEah~~~~~~--~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~ 230 (417)
T 2i4i_A 158 TPGRLVD---MME--RGKIGLDFCKYLVLDEADRMLDMG--FEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARD 230 (417)
T ss_dssp CHHHHHH---HHH--TTSBCCTTCCEEEESSHHHHHHTT--CHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHH
T ss_pred ChHHHHH---HHH--cCCcChhhCcEEEEEChhHhhccC--cHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHH
Confidence 9998753 111 223456789999999999999998 8888877433222222 577999999999888777777
Q ss_pred HhcccceEEEec-cCCCCcceEEEeeccCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEec
Q 035988 268 MLHIRKCIKFVS-TINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYH 346 (692)
Q Consensus 268 ~l~~~~~~~~~~-~~~r~~l~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h 346 (692)
++..+....... ....+++...+.... .......+.+++... ..++++||||++++.++.+++.|...|+.+..+|
T Consensus 231 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h 307 (417)
T 2i4i_A 231 FLDEYIFLAVGRVGSTSENITQKVVWVE--ESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIH 307 (417)
T ss_dssp HCSSCEEEEEC----CCSSEEEEEEECC--GGGHHHHHHHHHHTC-CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEEC
T ss_pred HcCCCEEEEeCCCCCCccCceEEEEEec--cHhHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEec
Confidence 766443332222 223344444433332 234456677777654 3678999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHHH
Q 035988 347 ADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPR 426 (692)
Q Consensus 347 ~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~ 426 (692)
|+++.++|..+++.|++|+.+|||||+++++|+|+|++++||++++|.|+.+|+||+||+||.|+.|.|++|+++.|...
T Consensus 308 ~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~ 387 (417)
T 2i4i_A 308 GDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINI 387 (417)
T ss_dssp TTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGG
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998777
Q ss_pred HHHHHh
Q 035988 427 QSSMVF 432 (692)
Q Consensus 427 ~~~l~~ 432 (692)
...+..
T Consensus 388 ~~~l~~ 393 (417)
T 2i4i_A 388 TKDLLD 393 (417)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666654
No 5
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.1e-50 Score=464.77 Aligned_cols=358 Identities=18% Similarity=0.256 Sum_probs=282.9
Q ss_pred CccccccccCCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHH--cCCCEEEEecCCChhHHHHHHHHHhc----------
Q 035988 63 STAVENWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVL--SGRDVLVIMAAGGGKSLCYQLPAVLR---------- 130 (692)
Q Consensus 63 ~~~~~~w~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il--~g~dviv~apTGsGKTl~~~lpal~~---------- 130 (692)
+....+|.+...+++.+.+.+. .+||..|||+|.++|+.++ .++|+++.||||+|||++|++|++..
T Consensus 16 ~~~~~~l~~~~~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~ 94 (579)
T 3sqw_A 16 EVTLDSLLEEGVLDKEIHKAIT-RMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQY 94 (579)
T ss_dssp CCCHHHHHHTTSSCHHHHHHHH-TTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTT
T ss_pred CcCHHHHhhcCCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccC
Confidence 4445555545668999999997 4799999999999999999 78899999999999999999998843
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHc--------CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHH
Q 035988 131 EGIALVVSPLLSLIQDQVMCLAAL--------GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMS 202 (692)
Q Consensus 131 ~~~~lvi~Pt~~L~~q~~~~l~~~--------gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~ 202 (692)
++++|||+||++|+.|+.+.++++ .+.+..+.++..... ....+... .++|+|+||+++.. .+.
T Consensus 95 ~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~---~~~~l~~~--~~~IlV~Tp~~l~~---~l~ 166 (579)
T 3sqw_A 95 MVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA---AMNKMNKL--RPNIVIATPGRLID---VLE 166 (579)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHH---HHHHHHHH--CCSEEEECHHHHHH---HHH
T ss_pred CCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHH---HHHHHhcC--CCCEEEECHHHHHH---HHH
Confidence 248999999999999999999875 245666776655443 23333333 68999999998853 222
Q ss_pred HHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHHHHhhC-----CCCCEEEEecccchhhHHHHHHHhcccceEEE
Q 035988 203 KLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQF-----PDVPMMALTATATQKVQNDLMEMLHIRKCIKF 277 (692)
Q Consensus 203 ~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~-----~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~ 277 (692)
.. ....+..+++|||||||++++|| |++.+..+....... +++++++||||+++.+...+...+..+....+
T Consensus 167 ~~-~~~~~~~~~~lViDEah~l~~~g--f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~ 243 (579)
T 3sqw_A 167 KY-SNKFFRFVDYKVLDEADRLLEIG--FRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFL 243 (579)
T ss_dssp HH-HHHHCTTCCEEEEETHHHHTSTT--THHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEE
T ss_pred hc-cccccccCCEEEEEChHHhhcCC--CHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEE
Confidence 11 12356789999999999999999 999998876554432 37789999999999888777776666554443
Q ss_pred ecc-CCC----CcceEEEeeccCcc---hHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHC---CCceeEec
Q 035988 278 VST-INR----PNLFYMVREKSSVG---KVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQR---GISADYYH 346 (692)
Q Consensus 278 ~~~-~~r----~~l~~~v~~~~~~~---~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~---g~~v~~~h 346 (692)
... ... ..+...+....... ...+..+...+... ..+.++||||+|++.|+.+++.|... ++.+..+|
T Consensus 244 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~h 322 (579)
T 3sqw_A 244 DTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKER-DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFH 322 (579)
T ss_dssp ESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHT-TTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEES
T ss_pred eecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhc-CCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEec
Confidence 321 111 22222222222211 12334445555443 26789999999999999999999987 89999999
Q ss_pred cCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHHH
Q 035988 347 ADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPR 426 (692)
Q Consensus 347 ~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~ 426 (692)
|+|++++|..+++.|++|+.+|||||+++++|||+|++++||++++|.+++.|+||+|||||.|+.|.|++|+++.|...
T Consensus 323 g~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~ 402 (579)
T 3sqw_A 323 GKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPF 402 (579)
T ss_dssp TTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHH
T ss_pred CCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHhh
Q 035988 427 QSSMVFY 433 (692)
Q Consensus 427 ~~~l~~~ 433 (692)
++.+...
T Consensus 403 ~~~l~~~ 409 (579)
T 3sqw_A 403 VRELEDA 409 (579)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887653
No 6
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=5.1e-50 Score=458.11 Aligned_cols=358 Identities=18% Similarity=0.263 Sum_probs=281.3
Q ss_pred CccccccccCCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHH--cCCCEEEEecCCChhHHHHHHHHHhc----------
Q 035988 63 STAVENWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVL--SGRDVLVIMAAGGGKSLCYQLPAVLR---------- 130 (692)
Q Consensus 63 ~~~~~~w~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il--~g~dviv~apTGsGKTl~~~lpal~~---------- 130 (692)
+.+..+|.....+++.+.+.+.+ +||..|||+|.++|+.++ .++|++++||||+|||++|++|++..
T Consensus 67 ~~~~~~l~~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~ 145 (563)
T 3i5x_A 67 EVTLDSLLEEGVLDKEIHKAITR-MEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQY 145 (563)
T ss_dssp CCCHHHHHHTTSSCHHHHHHHHT-TCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTT
T ss_pred CcCHHHHhhcCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccC
Confidence 33444555455688999999874 699999999999999999 67899999999999999999998853
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHc--------CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHH
Q 035988 131 EGIALVVSPLLSLIQDQVMCLAAL--------GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMS 202 (692)
Q Consensus 131 ~~~~lvi~Pt~~L~~q~~~~l~~~--------gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~ 202 (692)
++++|||+||++|+.|+++.++++ +..+..+.++...... +..+... .++|+|+||+++.. .+.
T Consensus 146 ~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~--~~~Iiv~Tp~~l~~---~l~ 217 (563)
T 3i5x_A 146 MVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAA---MNKMNKL--RPNIVIATPGRLID---VLE 217 (563)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHH---HHHHHHH--CCSEEEECHHHHHH---HHH
T ss_pred CeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHH---HHHHhcC--CCCEEEECcHHHHH---HHH
Confidence 248999999999999999999874 3456777776654432 3333333 68999999998863 222
Q ss_pred HHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHHHHhh-----CCCCCEEEEecccchhhHHHHHHHhcccceEEE
Q 035988 203 KLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQ-----FPDVPMMALTATATQKVQNDLMEMLHIRKCIKF 277 (692)
Q Consensus 203 ~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~-----~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~ 277 (692)
.. ....+..+++|||||||++++|| |++.+..+...... .+++++++||||+++.+...+...+..+....+
T Consensus 218 ~~-~~~~~~~~~~lViDEah~l~~~~--f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~ 294 (563)
T 3i5x_A 218 KY-SNKFFRFVDYKVLDEADRLLEIG--FRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFL 294 (563)
T ss_dssp HH-HHHHCTTCCEEEEETHHHHTSTT--THHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEE
T ss_pred hc-cccccccceEEEEeCHHHHhccc--hHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEE
Confidence 11 12346789999999999999999 99999887554432 347789999999999887777666665554443
Q ss_pred ecc-CC----CCcceEEEeeccCcch---HHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHC---CCceeEec
Q 035988 278 VST-IN----RPNLFYMVREKSSVGK---VVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQR---GISADYYH 346 (692)
Q Consensus 278 ~~~-~~----r~~l~~~v~~~~~~~~---~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~---g~~v~~~h 346 (692)
... .. ...+............ ..+..+...+... ..+.++||||+|++.|+.++..|... ++.+..+|
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h 373 (563)
T 3i5x_A 295 DTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKER-DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFH 373 (563)
T ss_dssp ESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHT-TTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEES
T ss_pred eccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhc-CCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEec
Confidence 221 11 1222222222222111 2234444444433 36889999999999999999999987 89999999
Q ss_pred cCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHHH
Q 035988 347 ADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPR 426 (692)
Q Consensus 347 ~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~ 426 (692)
|+|++.+|..+++.|++|+.+|||||+++++|||+|++++||++++|.++.+|+||+|||||.|+.|.|++|+++.|...
T Consensus 374 ~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~ 453 (563)
T 3i5x_A 374 GKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPF 453 (563)
T ss_dssp TTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHH
T ss_pred CCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHhh
Q 035988 427 QSSMVFY 433 (692)
Q Consensus 427 ~~~l~~~ 433 (692)
++.+...
T Consensus 454 ~~~l~~~ 460 (563)
T 3i5x_A 454 VRELEDA 460 (563)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887654
No 7
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=3.3e-49 Score=433.19 Aligned_cols=347 Identities=17% Similarity=0.287 Sum_probs=278.2
Q ss_pred CccccccccCCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc------CCeEEE
Q 035988 63 STAVENWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR------EGIALV 136 (692)
Q Consensus 63 ~~~~~~w~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~------~~~~lv 136 (692)
+.+..+|. .+++++.+.+.+.+ +||..|+|+|.++++.++.|+|+++.||||+|||++|++|++.. ++++||
T Consensus 33 ~~~~~~f~-~~~l~~~l~~~l~~-~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~li 110 (410)
T 2j0s_A 33 VDVTPTFD-TMGLREDLLRGIYA-YGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALI 110 (410)
T ss_dssp CCCCCSGG-GGCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEE
T ss_pred ccCCCCHh-hcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEE
Confidence 34455666 67899999999975 69999999999999999999999999999999999999998843 579999
Q ss_pred EcccHHHHHHHHHHHHHc----CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHH-hhhhcC
Q 035988 137 VSPLLSLIQDQVMCLAAL----GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLE-KCHHAG 211 (692)
Q Consensus 137 i~Pt~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~-~~~~~~ 211 (692)
++|+++|+.|+.+.++++ ++.+..+.|+.......... .. .++|+|+||+++.. .+. ....+.
T Consensus 111 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~---~~~ivv~Tp~~l~~------~l~~~~~~~~ 178 (410)
T 2j0s_A 111 LAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKL---DY---GQHVVAGTPGRVFD------MIRRRSLRTR 178 (410)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHH---HH---CCSEEEECHHHHHH------HHHTTSSCCT
T ss_pred EcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHh---hc---CCCEEEcCHHHHHH------HHHhCCccHh
Confidence 999999999999999886 47788888877665433222 22 67999999997753 222 234567
Q ss_pred CceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEec-cCCCCcceEEE
Q 035988 212 RLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVS-TINRPNLFYMV 290 (692)
Q Consensus 212 ~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~r~~l~~~v 290 (692)
+++++||||||++.+++ |...+.. .+....++.+++++|||++..+...+..++..+..+.... ....+++....
T Consensus 179 ~~~~vViDEah~~~~~~--~~~~~~~--i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (410)
T 2j0s_A 179 AIKMLVLDEADEMLNKG--FKEQIYD--VYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFF 254 (410)
T ss_dssp TCCEEEEETHHHHTSTT--THHHHHH--HHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEE
T ss_pred heeEEEEccHHHHHhhh--hHHHHHH--HHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEE
Confidence 89999999999999888 7776655 3334446789999999999876655544444332222211 12223333222
Q ss_pred eeccCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEE
Q 035988 291 REKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIV 370 (692)
Q Consensus 291 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILV 370 (692)
.... ........+.+++... ..+++||||++++.++.+++.|.+.|+.+..+||++++++|..+++.|++|+.+|||
T Consensus 255 ~~~~-~~~~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv 331 (410)
T 2j0s_A 255 VAVE-REEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLI 331 (410)
T ss_dssp EEES-STTHHHHHHHHHHHHH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEE
T ss_pred EEeC-cHHhHHHHHHHHHHhc--CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEE
Confidence 2222 2233566777777766 567999999999999999999999999999999999999999999999999999999
Q ss_pred eccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHHHHHHH
Q 035988 371 GTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSM 430 (692)
Q Consensus 371 aT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~~~~l 430 (692)
||+++++|+|+|++++||++++|.+...|+||+||+||.|++|.|++|+++.|...++.+
T Consensus 332 ~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i 391 (410)
T 2j0s_A 332 STDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI 391 (410)
T ss_dssp ECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHH
T ss_pred ECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998887665544
No 8
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=4.9e-48 Score=420.62 Aligned_cols=337 Identities=17% Similarity=0.209 Sum_probs=274.5
Q ss_pred ccccCCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc------CCeEEEEcccH
Q 035988 68 NWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR------EGIALVVSPLL 141 (692)
Q Consensus 68 ~w~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~------~~~~lvi~Pt~ 141 (692)
+|. .+++++.+.+.|.+ +||..|+|+|.++++.++.|+++++.||||+|||++|++|++.. ++++||++|++
T Consensus 9 ~f~-~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~ 86 (391)
T 1xti_A 9 GFR-DFLLKPELLRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTR 86 (391)
T ss_dssp CGG-GGCCCHHHHHHHHH-HSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCH
T ss_pred Chh-hcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCH
Confidence 465 67899999999986 69999999999999999999999999999999999999999864 45899999999
Q ss_pred HHHHHHHHHHHHc-----CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEE
Q 035988 142 SLIQDQVMCLAAL-----GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLI 216 (692)
Q Consensus 142 ~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~i 216 (692)
+|+.|+.+.++++ ++++..+.|+......... +..+ .++|+|+||+++.. +.. .....+.+++++
T Consensus 87 ~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~--~~~iiv~T~~~l~~---~~~--~~~~~~~~~~~v 156 (391)
T 1xti_A 87 ELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKN--CPHIVVGTPGRILA---LAR--NKSLNLKHIKHF 156 (391)
T ss_dssp HHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHHS--CCSEEEECHHHHHH---HHH--TTSSCCTTCSEE
T ss_pred HHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---HhcC--CCCEEEECHHHHHH---HHH--cCCccccccCEE
Confidence 9999999999887 7889999988776544332 2333 57999999998753 111 223356789999
Q ss_pred EEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEecc--CCCCcceEEEeecc
Q 035988 217 SIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVST--INRPNLFYMVREKS 294 (692)
Q Consensus 217 VIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~--~~r~~l~~~v~~~~ 294 (692)
||||||++.+|. .|+..+.. .+....++.+++++|||+++.....+..++..+........ ....++........
T Consensus 157 ViDEaH~~~~~~-~~~~~~~~--~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (391)
T 1xti_A 157 ILDECDKMLEQL-DMRRDVQE--IFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLK 233 (391)
T ss_dssp EECSHHHHTSSH-HHHHHHHH--HHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECC
T ss_pred EEeCHHHHhhcc-chHHHHHH--HHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcC
Confidence 999999998752 26665554 23333457889999999999888877777765443332221 12223332222221
Q ss_pred CcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccc
Q 035988 295 SVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVA 374 (692)
Q Consensus 295 ~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~ 374 (692)
.......+.+++... .++++||||++++.++.+++.|...|+.+..+||+++.++|..+++.|++|+.+|||||++
T Consensus 234 --~~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~ 309 (391)
T 1xti_A 234 --DNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL 309 (391)
T ss_dssp --GGGHHHHHHHHHHHS--CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCC
T ss_pred --chhHHHHHHHHHHhc--CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECCh
Confidence 234456777777765 7889999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCC
Q 035988 375 FGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPAD 423 (692)
Q Consensus 375 ~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d 423 (692)
+++|+|+|++++||++++|.|...|+||+||+||.|++|.|++|+++.+
T Consensus 310 ~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~ 358 (391)
T 1xti_A 310 FGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 358 (391)
T ss_dssp CSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHH
T ss_pred hhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccc
Confidence 9999999999999999999999999999999999999999999998764
No 9
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=4.2e-48 Score=422.79 Aligned_cols=345 Identities=21% Similarity=0.278 Sum_probs=278.5
Q ss_pred ccccccCCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc------CCeEEEEcc
Q 035988 66 VENWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR------EGIALVVSP 139 (692)
Q Consensus 66 ~~~w~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~------~~~~lvi~P 139 (692)
..+|. .+++++.+.+.|.+ +||..|+|+|.++++.++.|+++++.||||+|||++|++|++.. +.++||++|
T Consensus 20 ~~~f~-~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 97 (400)
T 1s2m_A 20 GNTFE-DFYLKRELLMGIFE-AGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVP 97 (400)
T ss_dssp -CCGG-GGCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred cCChh-hcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcC
Confidence 34566 78899999999986 69999999999999999999999999999999999999999853 458999999
Q ss_pred cHHHHHHHHHHHHHc----CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceE
Q 035988 140 LLSLIQDQVMCLAAL----GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSL 215 (692)
Q Consensus 140 t~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~ 215 (692)
+++|+.|+.+.++++ ++.+..+.|+........ .....++|+|+||+++.. +. ......+.++++
T Consensus 98 ~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~------~~~~~~~Ivv~T~~~l~~---~~--~~~~~~~~~~~~ 166 (400)
T 1s2m_A 98 TRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIL------RLNETVHILVGTPGRVLD---LA--SRKVADLSDCSL 166 (400)
T ss_dssp SHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHH------HTTSCCSEEEECHHHHHH---HH--HTTCSCCTTCCE
T ss_pred CHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHH------HhcCCCCEEEEchHHHHH---HH--HhCCcccccCCE
Confidence 999999999999876 678888888776543211 112378999999998753 11 123345678999
Q ss_pred EEEeCcccccccCCCchHHHHHHHHHHhh-CCCCCEEEEecccchhhHHHHHHHhcccceEEEeccCCCCcceEEEeecc
Q 035988 216 ISIDEAHCCSQWGHDFRPDYKNLGILKTQ-FPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKS 294 (692)
Q Consensus 216 iVIDEaH~l~~~g~~fr~~~~~l~~l~~~-~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~ 294 (692)
+||||||++.+.+ |...+.. +... .+..+++++|||++..+...+...+..+...........+++........
T Consensus 167 vIiDEaH~~~~~~--~~~~~~~---i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (400)
T 1s2m_A 167 FIMDEADKMLSRD--FKTIIEQ---ILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVE 241 (400)
T ss_dssp EEEESHHHHSSHH--HHHHHHH---HHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSSCBCTTEEEEEEECC
T ss_pred EEEeCchHhhhhc--hHHHHHH---HHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccccccCCceeEEEEec
Confidence 9999999987654 5555544 3333 35778999999999988888887776554333333333444433332222
Q ss_pred CcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccc
Q 035988 295 SVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVA 374 (692)
Q Consensus 295 ~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~ 374 (692)
...+...+..++... .++++||||++++.++.+++.|+..|+.+..+||+|+.++|..+++.|++|+.+|||||++
T Consensus 242 --~~~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~ 317 (400)
T 1s2m_A 242 --ERQKLHCLNTLFSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDL 317 (400)
T ss_dssp --GGGHHHHHHHHHHHS--CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSC
T ss_pred --hhhHHHHHHHHHhhc--CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc
Confidence 223456666666654 6789999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHHHHHHHHh
Q 035988 375 FGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVF 432 (692)
Q Consensus 375 ~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~~~~l~~ 432 (692)
+++|+|+|++++||++++|.|..+|+||+||+||.|++|.|++|+++.|...+..+..
T Consensus 318 ~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~ 375 (400)
T 1s2m_A 318 LTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQ 375 (400)
T ss_dssp SSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHH
T ss_pred cccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998776665543
No 10
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.2e-48 Score=428.67 Aligned_cols=350 Identities=18% Similarity=0.269 Sum_probs=265.1
Q ss_pred CccccccccCCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHh------cCCeEEE
Q 035988 63 STAVENWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVL------REGIALV 136 (692)
Q Consensus 63 ~~~~~~w~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~------~~~~~lv 136 (692)
+.....|. .+++++.+.+.+.+ +||..|+|+|.++|+.++.|+++++.||||+|||++|++|++. .++++||
T Consensus 36 ~~~~~~f~-~~~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~li 113 (414)
T 3eiq_A 36 NEIVDSFD-DMNLSESLLRGIYA-YGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALV 113 (414)
T ss_dssp CCCCCCGG-GGCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEE
T ss_pred cchhcCHh-hCCCCHHHHHHHHH-cCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEE
Confidence 33444555 67889999999986 7999999999999999999999999999999999999999885 3578999
Q ss_pred EcccHHHHHHHHHHHHHc----CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCC
Q 035988 137 VSPLLSLIQDQVMCLAAL----GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGR 212 (692)
Q Consensus 137 i~Pt~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~ 212 (692)
++|+++|+.|+.+.++++ ++.+..+.++...... ...+... .++|+|+||+++.. .+ ......+.+
T Consensus 114 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~iiv~T~~~l~~---~l--~~~~~~~~~ 183 (414)
T 3eiq_A 114 LAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQME--APHIIVGTPGRVFD---ML--NRRYLSPKY 183 (414)
T ss_dssp ECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTT--CCSEEEECHHHHHH---HH--HHTSSCSTT
T ss_pred EeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcC--CCCEEEECHHHHHH---HH--HcCCccccc
Confidence 999999999999999886 5677777766554322 2333323 78999999998753 11 123345677
Q ss_pred ceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEecc-CCCCcceEEEe
Q 035988 213 LSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVST-INRPNLFYMVR 291 (692)
Q Consensus 213 l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~-~~r~~l~~~v~ 291 (692)
+++|||||||++.+++ |...+.. .+....++.++++||||++..+...+..++..+..+..... ....++.....
T Consensus 184 ~~~vViDEah~~~~~~--~~~~~~~--~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (414)
T 3eiq_A 184 IKMFVLDEADEMLSRG--FKDQIYD--IFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYI 259 (414)
T ss_dssp CCEEEECSHHHHHHTT--THHHHHH--HHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEE
T ss_pred CcEEEEECHHHhhccC--cHHHHHH--HHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEE
Confidence 9999999999999888 7766655 44455578899999999998877766665544332222111 12223322222
Q ss_pred eccCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEe
Q 035988 292 EKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVG 371 (692)
Q Consensus 292 ~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVa 371 (692)
... ........+..++... ..+++||||++++.++.+++.|...++.+..+||+|+.++|..+++.|++|+.+||||
T Consensus 260 ~~~-~~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~ 336 (414)
T 3eiq_A 260 NVE-REEWKLDTLCDLYETL--TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLIT 336 (414)
T ss_dssp ECS-SSTTHHHHHHHHHHSS--CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEE
T ss_pred EeC-hHHhHHHHHHHHHHhC--CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEE
Confidence 222 2234566777777655 6789999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHHHHHHHH
Q 035988 372 TVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMV 431 (692)
Q Consensus 372 T~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~~~~l~ 431 (692)
|+++++|+|+|++++||++++|.|..+|+||+||+||.|++|.|++|+++.|...++.+.
T Consensus 337 T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~ 396 (414)
T 3eiq_A 337 TDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIE 396 (414)
T ss_dssp CSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHH
T ss_pred CCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998876665543
No 11
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1.5e-47 Score=416.73 Aligned_cols=335 Identities=15% Similarity=0.263 Sum_probs=268.2
Q ss_pred ccccccCCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC--CCEEEEecCCChhHHHHHHHHHhc------CCeEEEE
Q 035988 66 VENWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSG--RDVLVIMAAGGGKSLCYQLPAVLR------EGIALVV 137 (692)
Q Consensus 66 ~~~w~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g--~dviv~apTGsGKTl~~~lpal~~------~~~~lvi 137 (692)
..+|. .+++++.+.+.+.+ +||..|+|+|.++++.++.+ +++++.||||+|||++|++|++.. ++++||+
T Consensus 4 ~~~f~-~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil 81 (395)
T 3pey_A 4 AKSFD-ELGLAPELLKGIYA-MKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICL 81 (395)
T ss_dssp CCSST-TSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEE
T ss_pred ccCHh-hCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEE
Confidence 34666 78899999999986 69999999999999999998 999999999999999999998854 5689999
Q ss_pred cccHHHHHHHHHHHHHc----CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCc
Q 035988 138 SPLLSLIQDQVMCLAAL----GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRL 213 (692)
Q Consensus 138 ~Pt~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l 213 (692)
+|+++|+.|+.+.++++ ++.+....++...... ...++|+|+||+++.. ++ ......+.++
T Consensus 82 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~iiv~T~~~l~~---~~--~~~~~~~~~~ 146 (395)
T 3pey_A 82 APSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----------QINAQVIVGTPGTVLD---LM--RRKLMQLQKI 146 (395)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----------CBCCSEEEECHHHHHH---HH--HTTCBCCTTC
T ss_pred CCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----------cCCCCEEEEcHHHHHH---HH--HcCCcccccC
Confidence 99999999999999986 4566666655432211 1268999999998753 11 1233456789
Q ss_pred eEEEEeCcccccc-cCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEecc-CCCCcceEEEe
Q 035988 214 SLISIDEAHCCSQ-WGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVST-INRPNLFYMVR 291 (692)
Q Consensus 214 ~~iVIDEaH~l~~-~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~-~~r~~l~~~v~ 291 (692)
++|||||||++.+ ++ |...+.. ......++.+++++|||+++.+.......+........... ...+.+.....
T Consensus 147 ~~iIiDEah~~~~~~~--~~~~~~~--~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (395)
T 3pey_A 147 KIFVLDEADNMLDQQG--LGDQCIR--VKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYM 222 (395)
T ss_dssp CEEEEETHHHHHHSTT--HHHHHHH--HHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEE
T ss_pred CEEEEEChhhhcCccc--cHHHHHH--HHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEE
Confidence 9999999999987 44 6666554 23333457889999999999887777776655443333222 22333333333
Q ss_pred eccCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEe
Q 035988 292 EKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVG 371 (692)
Q Consensus 292 ~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVa 371 (692)
.. .........+..++... .++++||||++++.++.+++.|+..++.+..+||+|+.++|..+++.|++|+.+||||
T Consensus 223 ~~-~~~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~ 299 (395)
T 3pey_A 223 DC-KNEADKFDVLTELYGLM--TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLIT 299 (395)
T ss_dssp EC-SSHHHHHHHHHHHHTTT--TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEE
T ss_pred Ec-CchHHHHHHHHHHHHhc--cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEE
Confidence 22 22334455565555543 6789999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCccEEEEeCCCC------CHHHHHHHHhhcCCCCCCCeeEeecCCCCH
Q 035988 372 TVAFGMGINKPDVRFVIHHSLSK------SVETYYQESGRAGRDGLPSECLLFFRPADV 424 (692)
Q Consensus 372 T~~~~~GIDip~v~~VI~~~~P~------s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~ 424 (692)
|+++++|+|+|++++||++++|. |..+|+||+||+||.|+.|.|++|+++.+.
T Consensus 300 T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 358 (395)
T 3pey_A 300 TNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNS 358 (395)
T ss_dssp CGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHH
T ss_pred CChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHH
Confidence 99999999999999999999999 999999999999999999999999987543
No 12
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=3.8e-47 Score=416.28 Aligned_cols=336 Identities=17% Similarity=0.215 Sum_probs=270.2
Q ss_pred ccccccccCCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC--CCEEEEecCCChhHHHHHHHHHhc------CCeEE
Q 035988 64 TAVENWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSG--RDVLVIMAAGGGKSLCYQLPAVLR------EGIAL 135 (692)
Q Consensus 64 ~~~~~w~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g--~dviv~apTGsGKTl~~~lpal~~------~~~~l 135 (692)
.+..+|. .+++++.+.+.+.+ +||..|+|+|.++++.++.+ +++++.||||+|||++|++|++.. ++++|
T Consensus 22 ~~~~~f~-~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~l 99 (412)
T 3fht_A 22 YSVKSFE-ELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCL 99 (412)
T ss_dssp CCSSCTG-GGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEE
T ss_pred cccCCHh-hCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEE
Confidence 4455666 78899999999986 79999999999999999997 999999999999999999998743 34899
Q ss_pred EEcccHHHHHHHHHHHHHc-----CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHH--hhh
Q 035988 136 VVSPLLSLIQDQVMCLAAL-----GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLE--KCH 208 (692)
Q Consensus 136 vi~Pt~~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~--~~~ 208 (692)
|++|+++|+.|+.+.++++ ++.+....++....... ...++|+|+||+++.. .+. ...
T Consensus 100 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~ivv~T~~~l~~------~~~~~~~~ 164 (412)
T 3fht_A 100 CLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---------KISEQIVIGTPGTVLD------WCSKLKFI 164 (412)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTC---------CCCCSEEEECHHHHHH------HHTTSCSS
T ss_pred EECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhh---------cCCCCEEEECchHHHH------HHHhcCCc
Confidence 9999999999999998875 45666666665433211 2267999999997742 222 233
Q ss_pred hcCCceEEEEeCcccccc-cCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEeccCC-CCcc
Q 035988 209 HAGRLSLISIDEAHCCSQ-WGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTIN-RPNL 286 (692)
Q Consensus 209 ~~~~l~~iVIDEaH~l~~-~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~-r~~l 286 (692)
.+.++++|||||||++.+ ++ |...+.. .+....++.+++++|||+++.+.......+..+..+....... .+++
T Consensus 165 ~~~~~~~iViDEah~~~~~~~--~~~~~~~--~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (412)
T 3fht_A 165 DPKKIKVFVLDEADVMIATQG--HQDQSIR--IQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTI 240 (412)
T ss_dssp CGGGCCEEEEETHHHHHSTTT--THHHHHH--HHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTE
T ss_pred ChhhCcEEEEeCHHHHhhcCC--cHHHHHH--HHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCc
Confidence 457899999999999986 44 6655554 3333445789999999999988887777766544333322222 2233
Q ss_pred eEEEeeccCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCC
Q 035988 287 FYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKL 366 (692)
Q Consensus 287 ~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~ 366 (692)
....... .........+..++... .++++||||++++.++.+++.|...++.+..+||+|+.++|..+++.|++|+.
T Consensus 241 ~~~~~~~-~~~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 317 (412)
T 3fht_A 241 KQYYVLC-SSRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKE 317 (412)
T ss_dssp EEEEEEC-SSHHHHHHHHHHHHHHH--SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred eEEEEEc-CChHHHHHHHHHHHhhc--CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCC
Confidence 3222222 23345667777777766 67899999999999999999999999999999999999999999999999999
Q ss_pred cEEEeccccccccCCCCccEEEEeCCC------CCHHHHHHHHhhcCCCCCCCeeEeecCCCC
Q 035988 367 QVIVGTVAFGMGINKPDVRFVIHHSLS------KSVETYYQESGRAGRDGLPSECLLFFRPAD 423 (692)
Q Consensus 367 ~ILVaT~~~~~GIDip~v~~VI~~~~P------~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d 423 (692)
+|||||+++++|+|+|++++||++++| .+..+|+||+||+||.|..|.|++++++.+
T Consensus 318 ~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 380 (412)
T 3fht_A 318 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 380 (412)
T ss_dssp SEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHH
T ss_pred cEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChh
Confidence 999999999999999999999999999 578999999999999999999999998764
No 13
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.9e-47 Score=408.43 Aligned_cols=339 Identities=19% Similarity=0.280 Sum_probs=276.4
Q ss_pred ccccCCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC-CCEEEEecCCChhHHHHHHHHHhc-----CCeEEEEcccH
Q 035988 68 NWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSG-RDVLVIMAAGGGKSLCYQLPAVLR-----EGIALVVSPLL 141 (692)
Q Consensus 68 ~w~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g-~dviv~apTGsGKTl~~~lpal~~-----~~~~lvi~Pt~ 141 (692)
+|. .+++++.+.+.|.+ +||..|+|+|.++++.++++ +++++.+|||+|||++|++|++.. +.++||++|++
T Consensus 7 ~f~-~~~l~~~~~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~ 84 (367)
T 1hv8_A 7 NFN-ELNLSDNILNAIRN-KGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTR 84 (367)
T ss_dssp CGG-GSSCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCH
T ss_pred chh-hcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCH
Confidence 455 67899999999986 59999999999999999988 699999999999999999998754 56899999999
Q ss_pred HHHHHHHHHHHHc----CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEE
Q 035988 142 SLIQDQVMCLAAL----GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLIS 217 (692)
Q Consensus 142 ~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iV 217 (692)
+|+.|+.+.++++ ++.+..+.|+........... .++|+|+||+++.. .. ......+.+++++|
T Consensus 85 ~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-------~~~iiv~T~~~l~~---~~--~~~~~~~~~~~~iI 152 (367)
T 1hv8_A 85 ELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-------NANIVVGTPGRILD---HI--NRGTLNLKNVKYFI 152 (367)
T ss_dssp HHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-------TCSEEEECHHHHHH---HH--HTTCSCTTSCCEEE
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-------CCCEEEecHHHHHH---HH--HcCCcccccCCEEE
Confidence 9999999999985 577888888776554332222 57999999998753 11 12233467899999
Q ss_pred EeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEeccCCCCcceEEEeeccCcc
Q 035988 218 IDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVG 297 (692)
Q Consensus 218 IDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~~~~ 297 (692)
|||||++.+++ |...+.. .+....++.+++++|||+++.....+..+++...... .. ...++........ .
T Consensus 153 iDEah~~~~~~--~~~~~~~--~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~--~ 223 (367)
T 1hv8_A 153 LDEADEMLNMG--FIKDVEK--ILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIK--AK-INANIEQSYVEVN--E 223 (367)
T ss_dssp EETHHHHHTTT--THHHHHH--HHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEE--CC-SSSSSEEEEEECC--G
T ss_pred EeCchHhhhhc--hHHHHHH--HHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEE--ec-CCCCceEEEEEeC--h
Confidence 99999999888 7666655 3334446788999999999988887777766433222 21 1223322222221 2
Q ss_pred hHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEecccccc
Q 035988 298 KVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGM 377 (692)
Q Consensus 298 ~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~ 377 (692)
......+.+++. ..+.++||||++++.++.+++.|+..|+.+..+||+++.++|..+++.|++|+.+|||||+++++
T Consensus 224 ~~~~~~l~~~l~---~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~ 300 (367)
T 1hv8_A 224 NERFEALCRLLK---NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSR 300 (367)
T ss_dssp GGHHHHHHHHHC---STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHH
T ss_pred HHHHHHHHHHHh---cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhc
Confidence 345666777665 26789999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHHHHHHHHh
Q 035988 378 GINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVF 432 (692)
Q Consensus 378 GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~~~~l~~ 432 (692)
|+|+|++++||++++|.|..+|+||+||+||.|++|.|++++++.|...+..+..
T Consensus 301 Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~ 355 (367)
T 1hv8_A 301 GIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIER 355 (367)
T ss_dssp HCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHH
T ss_pred CCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998877666544
No 14
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.7e-48 Score=424.54 Aligned_cols=350 Identities=19% Similarity=0.279 Sum_probs=157.9
Q ss_pred CCccccccccCCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc------CCeEE
Q 035988 62 SSTAVENWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR------EGIAL 135 (692)
Q Consensus 62 ~~~~~~~w~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~------~~~~l 135 (692)
.+.+...|. .+++++.+.+.+.. +||..|+|+|.++++.++.|+++++.||||+|||++|++|++.. ++++|
T Consensus 16 ~~~~~~~f~-~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~l 93 (394)
T 1fuu_A 16 YDKVVYKFD-DMELDENLLRGVFG-YGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQAL 93 (394)
T ss_dssp SCCCCCSSG-GGCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEE
T ss_pred cccccCChh-hcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEE
Confidence 345556677 67899999999986 69999999999999999999999999999999999999998853 56999
Q ss_pred EEcccHHHHHHHHHHHHHc----CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcC
Q 035988 136 VVSPLLSLIQDQVMCLAAL----GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAG 211 (692)
Q Consensus 136 vi~Pt~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~ 211 (692)
|++|+++|+.|+.+.+.++ ++++..+.|+........... .++|+|+||+++... . ......+.
T Consensus 94 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------~~~i~v~T~~~l~~~---~--~~~~~~~~ 161 (394)
T 1fuu_A 94 MLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-------DAQIVVGTPGRVFDN---I--QRRRFRTD 161 (394)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-------HCSEEEECHHHHHHH---H--HTTSSCCT
T ss_pred EEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-------CCCEEEECHHHHHHH---H--HhCCcchh
Confidence 9999999999999999875 678888888877654433322 579999999987531 1 12233457
Q ss_pred CceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEec-cCCCCcceEEE
Q 035988 212 RLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVS-TINRPNLFYMV 290 (692)
Q Consensus 212 ~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~r~~l~~~v 290 (692)
+++++|+||||++.+++ |...+.. .+....++.+++++|||+++.....+..++..+..+.... ....+++....
T Consensus 162 ~~~~vIiDEah~~~~~~--~~~~~~~--~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (394)
T 1fuu_A 162 KIKMFILDEADEMLSSG--FKEQIYQ--IFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFY 237 (394)
T ss_dssp TCCEEEEETHHHHHHTT--CHHHHHH--HHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC------------
T ss_pred hCcEEEEEChHHhhCCC--cHHHHHH--HHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEE
Confidence 89999999999999888 7777766 3344446788999999999988777777766544333221 11122221111
Q ss_pred eeccCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEE
Q 035988 291 REKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIV 370 (692)
Q Consensus 291 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILV 370 (692)
.... ........+.+++... .++++||||++++.++.+++.|+..++.+..+||+|+.++|..+++.|++|+.+|||
T Consensus 238 ~~~~-~~~~~~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv 314 (394)
T 1fuu_A 238 VNVE-EEEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILI 314 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEcC-chhhHHHHHHHHHhcC--CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEE
Confidence 1111 1111334455555443 567999999999999999999999999999999999999999999999999999999
Q ss_pred eccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHHHHHHHHh
Q 035988 371 GTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVF 432 (692)
Q Consensus 371 aT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~~~~l~~ 432 (692)
||+++++|+|+|++++||++++|.|..+|+||+||+||.|++|.|++|+++.|...+..+..
T Consensus 315 ~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 376 (394)
T 1fuu_A 315 STDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEK 376 (394)
T ss_dssp --------------------------------------------------------------
T ss_pred ECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988776665543
No 15
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1e-46 Score=401.22 Aligned_cols=326 Identities=17% Similarity=0.246 Sum_probs=262.1
Q ss_pred CcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHc
Q 035988 75 WDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMCLAAL 154 (692)
Q Consensus 75 ~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~~~~~lvi~Pt~~L~~q~~~~l~~~ 154 (692)
+++.+.+.+++ +||..|+|+|.++++.+++++++++.+|||+|||++|++|++..+.++||++|+++|+.|+.+.++++
T Consensus 1 l~~~i~~~l~~-~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~ 79 (337)
T 2z0m_A 1 MNEKIEQAIRE-MGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILELGMKSLVVTPTRELTRQVASHIRDI 79 (337)
T ss_dssp CCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHHHHHHH
Confidence 35677888874 79999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred ----CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCC
Q 035988 155 ----GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHD 230 (692)
Q Consensus 155 ----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~ 230 (692)
++++..+.|+.........+ . .++|+|+||+++.. ++. .....+.+++++|+||||++.+|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~i~v~T~~~l~~---~~~--~~~~~~~~~~~iViDEah~~~~~~-- 145 (337)
T 2z0m_A 80 GRYMDTKVAEVYGGMPYKAQINRV---R----NADIVVATPGRLLD---LWS--KGVIDLSSFEIVIIDEADLMFEMG-- 145 (337)
T ss_dssp TTTSCCCEEEECTTSCHHHHHHHH---T----TCSEEEECHHHHHH---HHH--TTSCCGGGCSEEEEESHHHHHHTT--
T ss_pred hhhcCCcEEEEECCcchHHHHhhc---C----CCCEEEECHHHHHH---HHH--cCCcchhhCcEEEEEChHHhhccc--
Confidence 57888888877665432221 1 58999999998753 111 223345788999999999999988
Q ss_pred chHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEeccCCCCcceEEEeeccCcchHHHHHHHHHHHH
Q 035988 231 FRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQE 310 (692)
Q Consensus 231 fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~l~~~l~~ 310 (692)
|...+.. .+....+..+++++|||+++.....+..++..... +......+++............ .....+..
T Consensus 146 ~~~~~~~--~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 217 (337)
T 2z0m_A 146 FIDDIKI--ILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEE--IEACIGLANVEHKFVHVKDDWR----SKVQALRE 217 (337)
T ss_dssp CHHHHHH--HHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEE--EECSGGGGGEEEEEEECSSSSH----HHHHHHHT
T ss_pred cHHHHHH--HHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCcee--eecccccCCceEEEEEeChHHH----HHHHHHHh
Confidence 7666554 23333345667889999999888888777654432 2333344444444444333222 22344444
Q ss_pred hCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEEe
Q 035988 311 SYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHH 390 (692)
Q Consensus 311 ~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~ 390 (692)
. .++++||||++++.++.+++.|. .+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++
T Consensus 218 ~--~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~ 291 (337)
T 2z0m_A 218 N--KDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINF 291 (337)
T ss_dssp C--CCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEES
T ss_pred C--CCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEe
Confidence 3 78899999999999999999886 58899999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHHHHHHH
Q 035988 391 SLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSM 430 (692)
Q Consensus 391 ~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~~~~l 430 (692)
++|.|+.+|+||+||+||.|++|.|++|+. .|....+.+
T Consensus 292 ~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i 330 (337)
T 2z0m_A 292 DAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEV 330 (337)
T ss_dssp SCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHH
T ss_pred cCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHH
Confidence 999999999999999999999999999999 665555444
No 16
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=7.8e-48 Score=431.34 Aligned_cols=334 Identities=17% Similarity=0.217 Sum_probs=145.8
Q ss_pred ccccccCCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC--CCEEEEecCCChhHHHHHHHHHhc------CCeEEEE
Q 035988 66 VENWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSG--RDVLVIMAAGGGKSLCYQLPAVLR------EGIALVV 137 (692)
Q Consensus 66 ~~~w~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g--~dviv~apTGsGKTl~~~lpal~~------~~~~lvi 137 (692)
..+|. .+++++.+.+.|.+ +||..|+|+|.++++.++.+ +++++.||||||||++|++|++.. .+++||+
T Consensus 91 ~~~f~-~~~l~~~l~~~l~~-~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil 168 (479)
T 3fmp_B 91 VKSFE-ELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCL 168 (479)
T ss_dssp CCCSG-GGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEE
T ss_pred cCCHH-HcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEE
Confidence 34455 67899999999986 79999999999999999987 999999999999999999999853 2489999
Q ss_pred cccHHHHHHHHHHHHHc-----CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHh--hhhc
Q 035988 138 SPLLSLIQDQVMCLAAL-----GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEK--CHHA 210 (692)
Q Consensus 138 ~Pt~~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~--~~~~ 210 (692)
+|+++|+.|+.+.++++ ++.+....++....... ....+|+|+||+++. +.+.+ ...+
T Consensus 169 ~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~Ivv~Tp~~l~------~~l~~~~~~~~ 233 (479)
T 3fmp_B 169 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---------KISEQIVIGTPGTVL------DWCSKLKFIDP 233 (479)
T ss_dssp CSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTC---------CCCCSEEEECHHHHH------HHHTTSCCCCG
T ss_pred eChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccc---------cCCCCEEEECchHHH------HHHHhcCCcCc
Confidence 99999999998888775 45666666654432110 125799999999764 23322 3345
Q ss_pred CCceEEEEeCcccccc-cCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEeccCCCC-cceE
Q 035988 211 GRLSLISIDEAHCCSQ-WGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRP-NLFY 288 (692)
Q Consensus 211 ~~l~~iVIDEaH~l~~-~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~-~l~~ 288 (692)
.++++|||||||++.+ ++ |...+.. .+....++++++++|||++..+.......+..+..+.+....... .+..
T Consensus 234 ~~~~~iViDEah~~~~~~~--~~~~~~~--i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 309 (479)
T 3fmp_B 234 KKIKVFVLDEADVMIATQG--HQDQSIR--IQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQ 309 (479)
T ss_dssp GGCCEEEECCHHHHHTSTT--HHHHHHH--HHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC-----------
T ss_pred ccCCEEEEECHHHHhhcCC--cHHHHHH--HHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceE
Confidence 7899999999999986 44 6555554 334445678999999999998887777766544433332221111 1111
Q ss_pred EEeeccCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcE
Q 035988 289 MVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQV 368 (692)
Q Consensus 289 ~v~~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~I 368 (692)
..... .........+..++... ...++||||++++.|+.++..|...++.+..+||+|+..+|..+++.|++|+.+|
T Consensus 310 ~~~~~-~~~~~~~~~l~~~~~~~--~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~i 386 (479)
T 3fmp_B 310 YYVLC-SSRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKV 386 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEe-CCHHHHHHHHHHHHhhc--cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcE
Confidence 11111 11122344555555543 5679999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccccccCCCCccEEEEeCCC------CCHHHHHHHHhhcCCCCCCCeeEeecCCCC
Q 035988 369 IVGTVAFGMGINKPDVRFVIHHSLS------KSVETYYQESGRAGRDGLPSECLLFFRPAD 423 (692)
Q Consensus 369 LVaT~~~~~GIDip~v~~VI~~~~P------~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d 423 (692)
||||+++++|||+|++++||+||+| .+..+|+||+|||||.|..|.|++|+++.+
T Consensus 387 Lv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~ 447 (479)
T 3fmp_B 387 LVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 447 (479)
T ss_dssp -------------------------------------------------------------
T ss_pred EEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcc
Confidence 9999999999999999999999999 577899999999999999999999998765
No 17
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=7.2e-46 Score=407.54 Aligned_cols=320 Identities=15% Similarity=0.228 Sum_probs=251.9
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHh---cCCeEEEEcccHHHHHHHHHHHHHc
Q 035988 78 RADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVL---REGIALVVSPLLSLIQDQVMCLAAL 154 (692)
Q Consensus 78 ~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~---~~~~~lvi~Pt~~L~~q~~~~l~~~ 154 (692)
.+.+.+++.||| .|+|+|.++++.+++|+|++++||||+|||++|++|++. .++++||++||++|+.|+.+.++++
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 87 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKL 87 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHH
Confidence 466778888899 799999999999999999999999999999999999876 5789999999999999999999994
Q ss_pred ---CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccC---
Q 035988 155 ---GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWG--- 228 (692)
Q Consensus 155 ---gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g--- 228 (692)
|+++..++|+....++...+..+..+ .++|+|+||+++... +. . ..+.++++|||||||++++|+
T Consensus 88 ~~~~~~v~~~~g~~~~~~~~~~~~~l~~~--~~~Iiv~Tp~~l~~~---l~---~-~~~~~~~~iViDEaH~~~~~~~~~ 158 (414)
T 3oiy_A 88 ADEKVKIFGFYSSMKKEEKEKFEKSFEED--DYHILVFSTQFVSKN---RE---K-LSQKRFDFVFVDDVDAVLKASRNI 158 (414)
T ss_dssp CCSSCCEEECCTTSCHHHHHHHHHHHHHT--CCSEEEEEHHHHHHC---HH---H-HTTCCCSEEEESCHHHHHHCHHHH
T ss_pred ccCCceEEEEECCCChhhHHHHHHHhhcC--CCCEEEECHHHHHHH---HH---H-hccccccEEEEeChHhhhhccchh
Confidence 78999999999887666666777665 699999999988532 22 1 345689999999999998876
Q ss_pred ------CCchHH-HHHHHHHHh------h---CCCCCEEEEecc-cchhhHHHHH-HHhcccceEEEeccCCCCcceEEE
Q 035988 229 ------HDFRPD-YKNLGILKT------Q---FPDVPMMALTAT-ATQKVQNDLM-EMLHIRKCIKFVSTINRPNLFYMV 290 (692)
Q Consensus 229 ------~~fr~~-~~~l~~l~~------~---~~~~~~i~lSAT-~~~~~~~~i~-~~l~~~~~~~~~~~~~r~~l~~~v 290 (692)
..|.+. +..+..... . .++.+++++||| .+..+...+. ..++.... ......+++....
T Consensus 159 d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~ 235 (414)
T 3oiy_A 159 DTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVG---RLVSVARNITHVR 235 (414)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCSS---CCCCCCCSEEEEE
T ss_pred hhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCcC---ccccccccchhee
Confidence 558887 444322221 0 167899999999 4544443333 33332211 1112223333333
Q ss_pred eeccCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCcee-EeccCCCHHHHHHHHHHHhcCCCcEE
Q 035988 291 REKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISAD-YYHADMDINAREKVHMRWSKNKLQVI 369 (692)
Q Consensus 291 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~-~~h~~~~~~eR~~~~~~f~~g~~~IL 369 (692)
... ...+.+.+++.. .++++||||++++.|+.++..|+..|+.+. .+||. +|. ++.|++|+++||
T Consensus 236 ~~~-----~~~~~l~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vL 301 (414)
T 3oiy_A 236 ISS-----RSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINIL 301 (414)
T ss_dssp ESS-----CCHHHHHHHHHH---HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEE
T ss_pred ecc-----CHHHHHHHHHHH---cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEE
Confidence 322 124456666665 348999999999999999999999999998 99995 444 999999999999
Q ss_pred Ee----ccccccccCCCC-ccEEEEeCCC--CCHHHHHHHHhhcCCCC----CCCeeEeecCCCCHHH
Q 035988 370 VG----TVAFGMGINKPD-VRFVIHHSLS--KSVETYYQESGRAGRDG----LPSECLLFFRPADVPR 426 (692)
Q Consensus 370 Va----T~~~~~GIDip~-v~~VI~~~~P--~s~~~y~Qr~GRagR~G----~~g~~i~l~~~~d~~~ 426 (692)
|| |+++++|+|+|+ |++||+|++| .|+.+|+||+||+||.| ..|.|++|+ .|...
T Consensus 302 vat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~ 367 (414)
T 3oiy_A 302 IGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEI 367 (414)
T ss_dssp EEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHH
T ss_pred EEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHH
Confidence 99 999999999999 9999999999 99999999999999988 579999999 44433
No 18
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=2.3e-45 Score=430.30 Aligned_cols=373 Identities=17% Similarity=0.200 Sum_probs=241.1
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc-----C----CeEEEEcccHHHHHHH-HHHHHHcC---CC
Q 035988 91 AYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR-----E----GIALVVSPLLSLIQDQ-VMCLAALG---IP 157 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~-----~----~~~lvi~Pt~~L~~q~-~~~l~~~g---i~ 157 (692)
.|||+|.++++.++.|+++++.||||+|||++|++|++.. . +++|||+|+++|+.|+ .+.+++++ ++
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~ 86 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYR 86 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTTTSC
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCcCce
Confidence 7999999999999999999999999999999999998752 3 7899999999999999 99999874 78
Q ss_pred EEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHH---HHhhhhcCCceEEEEeCcccccccCCCchHH
Q 035988 158 AHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSK---LEKCHHAGRLSLISIDEAHCCSQWGHDFRPD 234 (692)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~---l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~ 234 (692)
+..++|+.........+. + .++|+|+||++|... +... ......+.++++|||||||++. +++.+...
T Consensus 87 v~~~~g~~~~~~~~~~~~----~--~~~Ilv~Tp~~L~~~--l~~~~~~~~~~~~~~~~~lvViDEaH~~~-~~~~~~~i 157 (699)
T 4gl2_A 87 VIGLSGDTQLKISFPEVV----K--SCDIIISTAQILENS--LLNLENGEDAGVQLSDFSLIIIDECHHTN-KEAVYNNI 157 (699)
T ss_dssp EEEEC----CCCCHHHHH----H--SCSEEEEEHHHHHHH--TC--------CCCGGGCSEEEEESGGGCB-TTBSSCSH
T ss_pred EEEEeCCcchhhHHHhhh----c--CCCEEEECHHHHHHH--HhccccccccceecccCcEEEEECccccC-ccchHHHH
Confidence 999998876543322221 1 789999999988631 1000 1223356789999999999984 33334443
Q ss_pred HHHHH--HHHhhC---------CCCCEEEEecccchh-------hHHHHHHHhcccce-EEE---------eccCCCCcc
Q 035988 235 YKNLG--ILKTQF---------PDVPMMALTATATQK-------VQNDLMEMLHIRKC-IKF---------VSTINRPNL 286 (692)
Q Consensus 235 ~~~l~--~l~~~~---------~~~~~i~lSAT~~~~-------~~~~i~~~l~~~~~-~~~---------~~~~~r~~l 286 (692)
...+. .+.... +..++++||||+... ....+...+..-.. ... .....+|+.
T Consensus 158 ~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~ 237 (699)
T 4gl2_A 158 MRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCK 237 (699)
T ss_dssp HHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEE
T ss_pred HHHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCce
Confidence 33211 111121 677899999999873 33444332221111 000 011123332
Q ss_pred eEEEeeccCc----------------------------------------------------------------------
Q 035988 287 FYMVREKSSV---------------------------------------------------------------------- 296 (692)
Q Consensus 287 ~~~v~~~~~~---------------------------------------------------------------------- 296 (692)
.+........
T Consensus 238 ~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 317 (699)
T 4gl2_A 238 KFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTI 317 (699)
T ss_dssp EEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHS
T ss_pred EEEEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 2222211000
Q ss_pred -------------------------------------------------------------chHHHHHHHHHHHHhCC--
Q 035988 297 -------------------------------------------------------------GKVVIDEIAKYIQESYP-- 313 (692)
Q Consensus 297 -------------------------------------------------------------~~~~~~~l~~~l~~~~~-- 313 (692)
...++..+.+++...+.
T Consensus 318 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~ 397 (699)
T 4gl2_A 318 RMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRT 397 (699)
T ss_dssp CHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcC
Confidence 00001112222322110
Q ss_pred C-CCceEEEEeccchHHHHHHHHHHC------CCceeEeccC--------CCHHHHHHHHHHHhcCCCcEEEeccccccc
Q 035988 314 N-SESGIVYCFSRKECEQVAQELRQR------GISADYYHAD--------MDINAREKVHMRWSKNKLQVIVGTVAFGMG 378 (692)
Q Consensus 314 ~-~~~~IIf~~s~~~~e~l~~~L~~~------g~~v~~~h~~--------~~~~eR~~~~~~f~~g~~~ILVaT~~~~~G 378 (692)
+ ++++||||++++.++.+++.|... |+++..+||+ |+..+|..+++.|++|+++|||||+++++|
T Consensus 398 ~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~G 477 (699)
T 4gl2_A 398 EESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEG 477 (699)
T ss_dssp SSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTT
T ss_pred CCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccC
Confidence 2 789999999999999999999987 8999999999 999999999999999999999999999999
Q ss_pred cCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHHHHH--------HHHhhh--------------hh
Q 035988 379 INKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQS--------SMVFYE--------------NS 436 (692)
Q Consensus 379 IDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~~~--------~l~~~~--------------~~ 436 (692)
||+|++++|||||+|.|+..|+||+|||||.| +.+++++...+..... .++... ..
T Consensus 478 IDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 555 (699)
T 4gl2_A 478 LDIKECNIVIRYGLVTNEIAMVQARGRARADE--STYVLVAHSGSGVIERETVNDFREKMMYKAIHCVQNMKPEEYAHKI 555 (699)
T ss_dssp SCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEESSSCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred CccccCCEEEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEeCCchHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 99999999999999999999999999988776 4445554444321111 111100 11
Q ss_pred hhHhHHHHHHHhcCCccchHHHHHhhhCCCcccccCCCc
Q 035988 437 GLQNLYDIVRYSQYPLHWNIEKVRLVIFEKLQQVNLFCM 475 (692)
Q Consensus 437 ~~~~l~~~~~~~~~~~~crr~~ll~~f~~~~~~C~~~Cd 475 (692)
....+..+..++. ...|++...+.||++....+|++||
T Consensus 556 ~~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~c~~c~ 593 (699)
T 4gl2_A 556 LELQMQSIMEKKM-KTKRNIAKHYKNNPSLITFLCKNCS 593 (699)
T ss_dssp HHHHHHHHHHCCS-CCC----------CCSEEEEESSSC
T ss_pred HHHHHHHHHHHHH-HHhhhHHhhhhcCcceeEEECCCCC
Confidence 1224567777776 6789999999999999866668898
No 19
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=4.5e-43 Score=420.32 Aligned_cols=356 Identities=19% Similarity=0.271 Sum_probs=266.9
Q ss_pred HHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHh---cCCeEEEEcccHHHHHHHHHHHHHc--CCCE
Q 035988 84 LNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVL---REGIALVVSPLLSLIQDQVMCLAAL--GIPA 158 (692)
Q Consensus 84 ~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~---~~~~~lvi~Pt~~L~~q~~~~l~~~--gi~~ 158 (692)
...|+| .|+|+|.++|+.+++|++++++||||+|||++|++|+.. .++++||++|+++|+.|+++.+++. ++++
T Consensus 33 ~~~~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v 111 (997)
T 4a4z_A 33 ARSWPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFDDVNI 111 (997)
T ss_dssp SCCCSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHTTC--CCE
T ss_pred HHhCCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHcCCCeE
Confidence 346888 589999999999999999999999999999998887653 4678999999999999999999986 6789
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHH
Q 035988 159 HMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNL 238 (692)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l 238 (692)
..++|+.... +.++|+|+||++|... + ......+.++++|||||||++.+|+ |...+..
T Consensus 112 ~~l~G~~~~~-------------~~~~IlV~Tpe~L~~~---l--~~~~~~l~~l~lvViDEaH~l~d~~--~g~~~e~- 170 (997)
T 4a4z_A 112 GLITGDVQIN-------------PDANCLIMTTEILRSM---L--YRGADLIRDVEFVIFDEVHYVNDQD--RGVVWEE- 170 (997)
T ss_dssp EEECSSCEEC-------------TTSSEEEEEHHHHHHH---H--HHTCSGGGGEEEEEECCTTCCCTTC--TTCCHHH-
T ss_pred EEEeCCCccC-------------CCCCEEEECHHHHHHH---H--HhCchhhcCCCEEEEECcccccccc--hHHHHHH-
Confidence 9999887533 2689999999987531 1 1233356789999999999999998 5555555
Q ss_pred HHHHhhCCCCCEEEEecccchhhHHHHHHHhcc---cceEEEeccCCCCcceEEEee---------cc------------
Q 035988 239 GILKTQFPDVPMMALTATATQKVQNDLMEMLHI---RKCIKFVSTINRPNLFYMVRE---------KS------------ 294 (692)
Q Consensus 239 ~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~---~~~~~~~~~~~r~~l~~~v~~---------~~------------ 294 (692)
.+....+++++++||||++... .+.++++. ....++.......++...+.. ..
T Consensus 171 -ii~~l~~~v~iIlLSAT~~n~~--ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (997)
T 4a4z_A 171 -VIIMLPQHVKFILLSATVPNTY--EFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHK 247 (997)
T ss_dssp -HHHHSCTTCEEEEEECCCTTHH--HHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHH
T ss_pred -HHHhcccCCCEEEEcCCCCChH--HHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHH
Confidence 3444556899999999997643 56666653 222233333222222211110 00
Q ss_pred ----------------------------------------------------------------------CcchHHHHHH
Q 035988 295 ----------------------------------------------------------------------SVGKVVIDEI 304 (692)
Q Consensus 295 ----------------------------------------------------------------------~~~~~~~~~l 304 (692)
......+..+
T Consensus 248 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 327 (997)
T 4a4z_A 248 EILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEI 327 (997)
T ss_dssp HHHC-----------------------------------------------------------------CCCCTTHHHHH
T ss_pred HHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHH
Confidence 0012235567
Q ss_pred HHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCC---------------------------------------ceeEe
Q 035988 305 AKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGI---------------------------------------SADYY 345 (692)
Q Consensus 305 ~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~---------------------------------------~v~~~ 345 (692)
...+... ...++||||+|++.|+.++..|...++ .+..+
T Consensus 328 i~~l~~~--~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~ 405 (997)
T 4a4z_A 328 VNYLRKR--ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVH 405 (997)
T ss_dssp HHHHHHT--TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEE
T ss_pred HHHHHhC--CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeee
Confidence 7777765 678999999999999999999977655 47899
Q ss_pred ccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEEeCCCC---------CHHHHHHHHhhcCCCC--CCCe
Q 035988 346 HADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSK---------SVETYYQESGRAGRDG--LPSE 414 (692)
Q Consensus 346 h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~~P~---------s~~~y~Qr~GRagR~G--~~g~ 414 (692)
||+|++.+|..+++.|.+|.++|||||+++++|||+|+ +.||+++.|+ |..+|+||+|||||.| ..|.
T Consensus 406 H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~ 484 (997)
T 4a4z_A 406 HGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGT 484 (997)
T ss_dssp CTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEE
T ss_pred cCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceE
Confidence 99999999999999999999999999999999999999 7777777766 9999999999999999 4588
Q ss_pred eEeec--CCCCHHHHHHHHhhhh-------------------hhhHhHHHHHHHh-----cCCccchHHHHHhhhCCCc
Q 035988 415 CLLFF--RPADVPRQSSMVFYEN-------------------SGLQNLYDIVRYS-----QYPLHWNIEKVRLVIFEKL 467 (692)
Q Consensus 415 ~i~l~--~~~d~~~~~~l~~~~~-------------------~~~~~l~~~~~~~-----~~~~~crr~~ll~~f~~~~ 467 (692)
|++++ ...+...+..++.... .....+..|+.++ .....|++...+.+|++..
T Consensus 485 vi~l~~~~~~~~~~~~~~i~~~~~~l~s~~~~~ynm~l~ll~~~~~~~~~~l~~sf~~~~~~~~~~~~~~~l~~l~~~~ 563 (997)
T 4a4z_A 485 VIVMAYNSPLSIATFKEVTMGVPTRLQSQFRLTYNMILNLLRIEALRVEEMIKYSFSENAKETLQPEHEKQIKVLQEEL 563 (997)
T ss_dssp EEEECCSSCCCHHHHHHHHHSCCCCCCCCCCCCHHHHHHHHHHCTTHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCcchHHHHHHHhcCCCcccccccccchHHHHHHHhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 88888 3445555555543321 1112334455444 3356799999999998875
No 20
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.8e-45 Score=408.57 Aligned_cols=328 Identities=14% Similarity=0.224 Sum_probs=218.0
Q ss_pred CCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC--CCEEEEecCCChhHHHHHHHHHhc------CCeEEEEcccHHH
Q 035988 72 TFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSG--RDVLVIMAAGGGKSLCYQLPAVLR------EGIALVVSPLLSL 143 (692)
Q Consensus 72 ~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g--~dviv~apTGsGKTl~~~lpal~~------~~~~lvi~Pt~~L 143 (692)
..++++.+.+.+.+ .|+..|+|+|.++++.++++ +++++.||||+|||++|++|++.. ++++||++|+++|
T Consensus 123 ~~~l~~~~~~~l~~-~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L 201 (508)
T 3fho_A 123 XXXXXXXXXXXXXX-XXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSREL 201 (508)
T ss_dssp -----------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHH
T ss_pred cccccccccccccc-ccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHH
Confidence 34566667777765 59999999999999999998 999999999999999999998754 3589999999999
Q ss_pred HHHHHHHHHHcC----CCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEe
Q 035988 144 IQDQVMCLAALG----IPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISID 219 (692)
Q Consensus 144 ~~q~~~~l~~~g----i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVID 219 (692)
+.|+.+.+++++ +......++.... .. ...++|+|+||+++... + ......+.++++||||
T Consensus 202 ~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~--~~~~~Ivv~T~~~l~~~---l--~~~~~~~~~~~lIIiD 266 (508)
T 3fho_A 202 ARQIMDVVTEMGKYTEVKTAFGIKDSVPK--------GA--KIDAQIVIGTPGTVMDL---M--KRRQLDARDIKVFVLD 266 (508)
T ss_dssp HHHHHHHHHHHSTTSSCCEEC--------------------CCCCSEEEECHHHHHHH---H--HTTCSCCTTCCEEEEC
T ss_pred HHHHHHHHHHhCCccCeeEEEEeCCcccc--------cc--cCCCCEEEECHHHHHHH---H--HcCCccccCCCEEEEe
Confidence 999999999873 2333322221111 01 12689999999987531 1 1233456789999999
Q ss_pred Ccccccc-cCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEec-cCCCCcceEEEeeccCcc
Q 035988 220 EAHCCSQ-WGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVS-TINRPNLFYMVREKSSVG 297 (692)
Q Consensus 220 EaH~l~~-~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~r~~l~~~v~~~~~~~ 297 (692)
|||++++ ++ |...+.. .+....++.+++++|||+++.+......++.....+.... ....+++........ ..
T Consensus 267 EaH~~~~~~~--~~~~~~~--i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~ 341 (508)
T 3fho_A 267 EADNMLDQQG--LGDQSMR--IKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQ-SE 341 (508)
T ss_dssp CHHHHTTC----CHHHHHH--HHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC---C
T ss_pred chhhhcccCC--cHHHHHH--HHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECC-ch
Confidence 9999986 44 6666555 2333345788999999999887776666655443322211 122222222222221 12
Q ss_pred hHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEecccccc
Q 035988 298 KVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGM 377 (692)
Q Consensus 298 ~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~ 377 (692)
......+..++... .++++||||++++.++.++..|.+.++.+..+||+++..+|..+++.|++|+.+|||||+++++
T Consensus 342 ~~k~~~l~~ll~~~--~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~ 419 (508)
T 3fho_A 342 EHKYNVLVELYGLL--TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIAR 419 (508)
T ss_dssp HHHHHHHHHHHC-----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC----
T ss_pred HHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhc
Confidence 34455666666544 6789999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccEEEEeCCC------CCHHHHHHHHhhcCCCCCCCeeEeecCCC
Q 035988 378 GINKPDVRFVIHHSLS------KSVETYYQESGRAGRDGLPSECLLFFRPA 422 (692)
Q Consensus 378 GIDip~v~~VI~~~~P------~s~~~y~Qr~GRagR~G~~g~~i~l~~~~ 422 (692)
|+|+|++++||++++| .|+.+|+||+||+||.|++|.|++|+.+.
T Consensus 420 GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~ 470 (508)
T 3fho_A 420 GIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDK 470 (508)
T ss_dssp -CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTT
T ss_pred CCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeCh
Confidence 9999999999999999 88999999999999999999999999854
No 21
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=9.3e-43 Score=407.97 Aligned_cols=326 Identities=16% Similarity=0.236 Sum_probs=207.8
Q ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc--------CCeEEEEcccHHHHHHHHHHHHHc---
Q 035988 86 VFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR--------EGIALVVSPLLSLIQDQVMCLAAL--- 154 (692)
Q Consensus 86 ~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~--------~~~~lvi~Pt~~L~~q~~~~l~~~--- 154 (692)
.+||..|||+|.++++.++.|+|+|+++|||+|||++|++|++.. ++++||++||++|+.|+.+.++++
T Consensus 8 ~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~ 87 (696)
T 2ykg_A 8 LYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFER 87 (696)
T ss_dssp TTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred ccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhcc
Confidence 579999999999999999999999999999999999999998732 178999999999999999999987
Q ss_pred -CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHh-hh-hcCCceEEEEeCcccccccCCCc
Q 035988 155 -GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEK-CH-HAGRLSLISIDEAHCCSQWGHDF 231 (692)
Q Consensus 155 -gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~-~~-~~~~l~~iVIDEaH~l~~~g~~f 231 (692)
++++..++|+.......... .. .++|+|+||++|.. .+.. .. .+.++++|||||||++..+. .+
T Consensus 88 ~~~~v~~~~g~~~~~~~~~~~---~~---~~~Iiv~Tp~~L~~------~l~~~~~~~l~~~~~vViDEaH~~~~~~-~~ 154 (696)
T 2ykg_A 88 HGYRVTGISGATAENVPVEQI---VE---NNDIIILTPQILVN------NLKKGTIPSLSIFTLMIFDECHNTSKQH-PY 154 (696)
T ss_dssp TTCCEEEECSSSCSSSCHHHH---HH---TCSEEEECHHHHHH------HHHTTSSCCGGGCSEEEEETGGGCSTTC-HH
T ss_pred CCceEEEEeCCccccccHHHh---cc---CCCEEEECHHHHHH------HHhcCcccccccccEEEEeCCCcccCcc-cH
Confidence 78999999887543222111 11 68999999998753 2222 22 46789999999999998654 23
Q ss_pred hHHHHHHHHHHhh-----CCCCCEEEEecccc-------hhhHHHHHHHhcccceEEEec--------------------
Q 035988 232 RPDYKNLGILKTQ-----FPDVPMMALTATAT-------QKVQNDLMEMLHIRKCIKFVS-------------------- 279 (692)
Q Consensus 232 r~~~~~l~~l~~~-----~~~~~~i~lSAT~~-------~~~~~~i~~~l~~~~~~~~~~-------------------- 279 (692)
...... .+... .+..++++||||+. ......+...+..-....+..
T Consensus 155 ~~i~~~--~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~ 232 (696)
T 2ykg_A 155 NMIMFN--YLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFR 232 (696)
T ss_dssp HHHHHH--HHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEE
T ss_pred HHHHHH--HHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEE
Confidence 333322 22221 25678999999997 444444444432111000000
Q ss_pred --cCCCCcce---------------------------------------------------EEEee--------------
Q 035988 280 --TINRPNLF---------------------------------------------------YMVRE-------------- 292 (692)
Q Consensus 280 --~~~r~~l~---------------------------------------------------~~v~~-------------- 292 (692)
......++ +....
T Consensus 233 ~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 312 (696)
T 2ykg_A 233 KVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLY 312 (696)
T ss_dssp ECCCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHH
T ss_pred ecCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHH
Confidence 00000000 00000
Q ss_pred -------------------------------------------------------------ccCcchHHHHHHHHHHHHh
Q 035988 293 -------------------------------------------------------------KSSVGKVVIDEIAKYIQES 311 (692)
Q Consensus 293 -------------------------------------------------------------~~~~~~~~~~~l~~~l~~~ 311 (692)
.......++..+.+++...
T Consensus 313 ~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~ 392 (696)
T 2ykg_A 313 TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEE 392 (696)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 0000123455566666654
Q ss_pred C--CCCCceEEEEeccchHHHHHHHHHHCC----CceeEe--------ccCCCHHHHHHHHHHHhc-CCCcEEEeccccc
Q 035988 312 Y--PNSESGIVYCFSRKECEQVAQELRQRG----ISADYY--------HADMDINAREKVHMRWSK-NKLQVIVGTVAFG 376 (692)
Q Consensus 312 ~--~~~~~~IIf~~s~~~~e~l~~~L~~~g----~~v~~~--------h~~~~~~eR~~~~~~f~~-g~~~ILVaT~~~~ 376 (692)
+ .++.++||||+++..++.+++.|+..| +++..+ ||+|+.++|..+++.|++ |+.+|||||++++
T Consensus 393 ~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~ 472 (696)
T 2ykg_A 393 YHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVAD 472 (696)
T ss_dssp HTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSC
T ss_pred hccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhh
Confidence 2 256899999999999999999999988 888888 569999999999999998 9999999999999
Q ss_pred cccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHHHHH
Q 035988 377 MGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQS 428 (692)
Q Consensus 377 ~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~~~ 428 (692)
+|||+|++++|||||+|.|+++|+||+|| ||. .+|.|+++++..+.....
T Consensus 473 ~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~ 522 (696)
T 2ykg_A 473 EGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKE 522 (696)
T ss_dssp CC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHH
T ss_pred cCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHH
Confidence 99999999999999999999999999999 998 789999999988774433
No 22
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.9e-42 Score=400.16 Aligned_cols=373 Identities=16% Similarity=0.213 Sum_probs=272.8
Q ss_pred hHHHHHHHHHHHHHH--HHHHHHHHHHH-HHHHHHHHHHHHHHHhccCCCCccCCCCCccccccccCCCCcHHHHHHHHH
Q 035988 9 ELENVEAEVRLVQEQ--IKQLVDRQDQL-YERQSELKSLLEAFEASRGSPIQYGGSSSTAVENWSGTFEWDSRADDVRLN 85 (692)
Q Consensus 9 el~~~~~~l~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~~~~~~~~~~~~l~~ 85 (692)
.|.++...+.++... .+++...++.+ ++|.-.+.-.+...+..... ..+. .++.+..+.+.+.+
T Consensus 297 ~l~~~~~al~~iH~P~~~~~~~~a~~rl~~eEl~~~ql~l~~~r~~~~~--~~~~-----------~~~~~~~~~~~~~~ 363 (780)
T 1gm5_A 297 KLLGVKDAYYGMHFPKTFYHLEKARERLAYEELFVLQLAFQKIRKEREK--HGGI-----------PKKIEGKLAEEFIK 363 (780)
T ss_dssp CCCCSHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCC-----------CCCCCTHHHHHHHH
T ss_pred CCCcHHHHHHhCCCCCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh--ccCC-----------CCCCchHHHHHHHH
Confidence 355566667777654 44554455555 66665543332211111000 0000 22333455666666
Q ss_pred hcCCCCCCHHHHHHHHHHHcC------CCEEEEecCCChhHHHHHHHHHhc---CCeEEEEcccHHHHHHHHHHHHHc--
Q 035988 86 VFGIPAYRANQQEIINAVLSG------RDVLVIMAAGGGKSLCYQLPAVLR---EGIALVVSPLLSLIQDQVMCLAAL-- 154 (692)
Q Consensus 86 ~fg~~~~r~~Q~~ai~~il~g------~dviv~apTGsGKTl~~~lpal~~---~~~~lvi~Pt~~L~~q~~~~l~~~-- 154 (692)
.+|| .||++|.++|+.++.+ ++++++||||||||++|++|++.. +..++|++||++|+.|+++.++++
T Consensus 364 ~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~ 442 (780)
T 1gm5_A 364 SLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFS 442 (780)
T ss_dssp HSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHT
T ss_pred hCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhh
Confidence 7899 9999999999999875 699999999999999999998754 789999999999999999999875
Q ss_pred --CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCch
Q 035988 155 --GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFR 232 (692)
Q Consensus 155 --gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr 232 (692)
|+++..++|+....++...+..+..+ .++|+|+||+.+. ....+.+++++||||+|++ |...+
T Consensus 443 ~~gi~v~~l~G~~~~~~r~~~~~~l~~g--~~~IvVgT~~ll~----------~~~~~~~l~lVVIDEaHr~---g~~qr 507 (780)
T 1gm5_A 443 KFNIHVALLIGATTPSEKEKIKSGLRNG--QIDVVIGTHALIQ----------EDVHFKNLGLVIIDEQHRF---GVKQR 507 (780)
T ss_dssp CSSCCEEECCSSSCHHHHHHHHHHHHSS--CCCEEEECTTHHH----------HCCCCSCCCEEEEESCCCC--------
T ss_pred hcCceEEEEeCCCCHHHHHHHHHHHhcC--CCCEEEECHHHHh----------hhhhccCCceEEecccchh---hHHHH
Confidence 79999999999988888788888776 7999999998552 2345678999999999994 43322
Q ss_pred HHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEec-cCCCCcceEEEeeccCcchHHHHHHHHHHHHh
Q 035988 233 PDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVS-TINRPNLFYMVREKSSVGKVVIDEIAKYIQES 311 (692)
Q Consensus 233 ~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~r~~l~~~v~~~~~~~~~~~~~l~~~l~~~ 311 (692)
. .+....++.++++||||+.+..... ..++..+...+.. +..+..+...+... . ....+.+.+...
T Consensus 508 ~------~l~~~~~~~~vL~mSATp~p~tl~~--~~~g~~~~s~i~~~p~~r~~i~~~~~~~-~----~~~~l~~~i~~~ 574 (780)
T 1gm5_A 508 E------ALMNKGKMVDTLVMSATPIPRSMAL--AFYGDLDVTVIDEMPPGRKEVQTMLVPM-D----RVNEVYEFVRQE 574 (780)
T ss_dssp C------CCCSSSSCCCEEEEESSCCCHHHHH--HHTCCSSCEEECCCCSSCCCCEECCCCS-S----THHHHHHHHHHH
T ss_pred H------HHHHhCCCCCEEEEeCCCCHHHHHH--HHhCCcceeeeeccCCCCcceEEEEecc-c----hHHHHHHHHHHH
Confidence 2 2223345788999999998765443 2333333222222 23333333222221 1 234566666666
Q ss_pred CCCCCceEEEEecc--------chHHHHHHHHHH---CCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccC
Q 035988 312 YPNSESGIVYCFSR--------KECEQVAQELRQ---RGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGIN 380 (692)
Q Consensus 312 ~~~~~~~IIf~~s~--------~~~e~l~~~L~~---~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GID 380 (692)
...+++++|||+++ ..++.+++.|.+ .++.+..+||+|++++|..+++.|++|+++|||||+++++|||
T Consensus 575 l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GID 654 (780)
T 1gm5_A 575 VMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGID 654 (780)
T ss_dssp TTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSC
T ss_pred HhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCcccc
Confidence 66789999999976 457888888987 4788999999999999999999999999999999999999999
Q ss_pred CCCccEEEEeCCCC-CHHHHHHHHhhcCCCCCCCeeEeecCCCC
Q 035988 381 KPDVRFVIHHSLSK-SVETYYQESGRAGRDGLPSECLLFFRPAD 423 (692)
Q Consensus 381 ip~v~~VI~~~~P~-s~~~y~Qr~GRagR~G~~g~~i~l~~~~d 423 (692)
+|++++||+++.|. +...|.||+||+||.|.+|.|++++++.+
T Consensus 655 iP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~ 698 (780)
T 1gm5_A 655 VPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVG 698 (780)
T ss_dssp CTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCC
T ss_pred CCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCC
Confidence 99999999999996 78999999999999999999999998544
No 23
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=7.3e-42 Score=389.33 Aligned_cols=321 Identities=15% Similarity=0.229 Sum_probs=189.5
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc--------CCeEEEEcccHHHHHHHHHHHHHc----CCC
Q 035988 90 PAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR--------EGIALVVSPLLSLIQDQVMCLAAL----GIP 157 (692)
Q Consensus 90 ~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~--------~~~~lvi~Pt~~L~~q~~~~l~~~----gi~ 157 (692)
-.|||+|.++++.++.|+++++.+|||+|||++|++|++.. ++++|||+|+++|+.|+.+.++++ +++
T Consensus 6 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 85 (556)
T 4a2p_A 6 KKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYS 85 (556)
T ss_dssp --CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCC
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCce
Confidence 47999999999999999999999999999999999998754 789999999999999999999986 899
Q ss_pred EEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHh-hh-hcCCceEEEEeCcccccccCCCchHHH
Q 035988 158 AHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEK-CH-HAGRLSLISIDEAHCCSQWGHDFRPDY 235 (692)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~-~~-~~~~l~~iVIDEaH~l~~~g~~fr~~~ 235 (692)
+..++|+.......... .. .++|+|+||+++.. .+.. .. .+.++++|||||||++.+++. +....
T Consensus 86 ~~~~~g~~~~~~~~~~~---~~---~~~i~v~T~~~l~~------~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~~~~ 152 (556)
T 4a2p_A 86 VQGISGENFSNVSVEKV---IE---DSDIIVVTPQILVN------SFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLM 152 (556)
T ss_dssp EEECCCC-----CHHHH---HH---HCSEEEECHHHHHH------HHHSSSCCCSTTCSEEEEETGGGCSTTSH-HHHHH
T ss_pred EEEEeCCCCcchhHHHh---hC---CCCEEEECHHHHHH------HHHhCcccccccCCEEEEECCcccCCcch-HHHHH
Confidence 99998887544322211 11 58999999997753 2232 22 567899999999999998873 32222
Q ss_pred HHHHHHHh----hCCCCCEEEEecccchhh----------HHHHHHHhcccceEEEe-------ccCCCCcceEEEeecc
Q 035988 236 KNLGILKT----QFPDVPMMALTATATQKV----------QNDLMEMLHIRKCIKFV-------STINRPNLFYMVREKS 294 (692)
Q Consensus 236 ~~l~~l~~----~~~~~~~i~lSAT~~~~~----------~~~i~~~l~~~~~~~~~-------~~~~r~~l~~~v~~~~ 294 (692)
.. .+.. ..+..++++||||+.... ...+...++........ ....+|...+......
T Consensus 153 ~~--~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (556)
T 4a2p_A 153 TR--YLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRR 230 (556)
T ss_dssp HH--HHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCC
T ss_pred HH--HHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCC
Confidence 22 1211 135678999999995421 11222223211100000 0011222111111100
Q ss_pred --------------------------------------------------------------------------------
Q 035988 295 -------------------------------------------------------------------------------- 294 (692)
Q Consensus 295 -------------------------------------------------------------------------------- 294 (692)
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 310 (556)
T 4a2p_A 231 IHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRK 310 (556)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHH
Confidence
Q ss_pred ---------------------------------------------------------CcchHHHHHHHHHHHHhC--CCC
Q 035988 295 ---------------------------------------------------------SVGKVVIDEIAKYIQESY--PNS 315 (692)
Q Consensus 295 ---------------------------------------------------------~~~~~~~~~l~~~l~~~~--~~~ 315 (692)
.....++..+.+++.+.+ ..+
T Consensus 311 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~ 390 (556)
T 4a2p_A 311 YNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQ 390 (556)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCC
Confidence 000123344555554432 478
Q ss_pred CceEEEEeccchHHHHHHHHHHC------------CCceeEeccCCCHHHHHHHHHHHhc-CCCcEEEeccccccccCCC
Q 035988 316 ESGIVYCFSRKECEQVAQELRQR------------GISADYYHADMDINAREKVHMRWSK-NKLQVIVGTVAFGMGINKP 382 (692)
Q Consensus 316 ~~~IIf~~s~~~~e~l~~~L~~~------------g~~v~~~h~~~~~~eR~~~~~~f~~-g~~~ILVaT~~~~~GIDip 382 (692)
.++||||+++..++.+++.|... |.....+||+|+.++|..+++.|++ |+++|||||+++++|||+|
T Consensus 391 ~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip 470 (556)
T 4a2p_A 391 TRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIV 470 (556)
T ss_dssp CCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC---------
T ss_pred ceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCch
Confidence 89999999999999999999875 5556677889999999999999999 9999999999999999999
Q ss_pred CccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHHHH
Q 035988 383 DVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQ 427 (692)
Q Consensus 383 ~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~~ 427 (692)
++++|||||+|+|+..|+||+|| ||. .+|.|++|++..+....
T Consensus 471 ~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~ 513 (556)
T 4a2p_A 471 QCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVEN 513 (556)
T ss_dssp --CEEEEETCCSCHHHHHHC----------CCEEEEESCHHHHHH
T ss_pred hCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchHHH
Confidence 99999999999999999999999 999 78999999998876443
No 24
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-42 Score=413.86 Aligned_cols=334 Identities=18% Similarity=0.209 Sum_probs=245.6
Q ss_pred CCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc---CCeEEEEcccHHHHHHHHHH
Q 035988 74 EWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR---EGIALVVSPLLSLIQDQVMC 150 (692)
Q Consensus 74 ~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~---~~~~lvi~Pt~~L~~q~~~~ 150 (692)
++++.+...+...|+| .|+|+|.++|++++.|++++++||||||||++|++|++.. ++++||++||++|+.|+++.
T Consensus 168 ~l~~~~~~~~~~~~~f-~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~ 246 (1108)
T 3l9o_A 168 PIAEHKRVNEARTYPF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRE 246 (1108)
T ss_dssp TTTTTCCCSCSSCCSS-CCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH
T ss_pred CCChhhhHHHHHhCCC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHH
Confidence 3333333344555666 6999999999999999999999999999999999998754 78999999999999999999
Q ss_pred HHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCC
Q 035988 151 LAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHD 230 (692)
Q Consensus 151 l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~ 230 (692)
+.+....+..++|+.... +.++|+|+||++|.+. + ......+.++++|||||||++.+|+
T Consensus 247 l~~~~~~VglltGd~~~~-------------~~~~IlV~Tpe~L~~~---L--~~~~~~l~~l~lVVIDEaH~l~d~~-- 306 (1108)
T 3l9o_A 247 LLAEFGDVGLMTGDITIN-------------PDAGCLVMTTEILRSM---L--YRGSEVMREVAWVIFDEVHYMRDKE-- 306 (1108)
T ss_dssp HHHHTSSEEEECSSCBCC-------------CSCSEEEEEHHHHHHH---H--HHCSSHHHHEEEEEEETGGGTTSHH--
T ss_pred HHHHhCCccEEeCccccC-------------CCCCEEEeChHHHHHH---H--HcCccccccCCEEEEhhhhhccccc--
Confidence 998766888998887643 2789999999987531 1 1222335679999999999999887
Q ss_pred chHHHHHHHHHHhhCCCCCEEEEecccchh--hHHHHHHHhcccceEEEeccCCCCcceEEEee-----------ccCc-
Q 035988 231 FRPDYKNLGILKTQFPDVPMMALTATATQK--VQNDLMEMLHIRKCIKFVSTINRPNLFYMVRE-----------KSSV- 296 (692)
Q Consensus 231 fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~--~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~-----------~~~~- 296 (692)
|...+.. .+....++.++++||||++.. +...+....+.+ ..++........+...+.. ....
T Consensus 307 rg~~~e~--ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~-~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~ 383 (1108)
T 3l9o_A 307 RGVVWEE--TIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQP-CHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTF 383 (1108)
T ss_dssp HHHHHHH--HHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSC-EEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEE
T ss_pred hHHHHHH--HHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCC-eEEEecCCCcccceEEEeecCCcceeeeeccccch
Confidence 6666665 344455688999999998764 222233322222 2222222221111111110 0000
Q ss_pred -----------------------------------------chHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHH
Q 035988 297 -----------------------------------------GKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQEL 335 (692)
Q Consensus 297 -----------------------------------------~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L 335 (692)
....+..++..+... ...++||||+|++.|+.++..|
T Consensus 384 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~--~~~~vIVF~~sr~~~e~la~~L 461 (1108)
T 3l9o_A 384 REENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK--KYNPVIVFSFSKRDCEELALKM 461 (1108)
T ss_dssp CHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHT--TCCCEEEEESCHHHHHHHHHHT
T ss_pred hhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhc--CCCCEEEEeCcHHHHHHHHHHH
Confidence 022233445555444 5679999999999999999998
Q ss_pred HHCCCc---------------------------------------eeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccc
Q 035988 336 RQRGIS---------------------------------------ADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFG 376 (692)
Q Consensus 336 ~~~g~~---------------------------------------v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~ 376 (692)
...++. +..+||+|++.+|..+++.|++|.++|||||++++
T Consensus 462 ~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla 541 (1108)
T 3l9o_A 462 SKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFS 541 (1108)
T ss_dssp CSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCC
T ss_pred HhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHh
Confidence 643222 78999999999999999999999999999999999
Q ss_pred cccCCCCccEEEEeCC--------CCCHHHHHHHHhhcCCCC--CCCeeEeecCCC-CHHHHHHHHhh
Q 035988 377 MGINKPDVRFVIHHSL--------SKSVETYYQESGRAGRDG--LPSECLLFFRPA-DVPRQSSMVFY 433 (692)
Q Consensus 377 ~GIDip~v~~VI~~~~--------P~s~~~y~Qr~GRagR~G--~~g~~i~l~~~~-d~~~~~~l~~~ 433 (692)
+|||+|++++||+++. |-|..+|+||+|||||.| ..|.|++++++. +...+..++..
T Consensus 542 ~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~~ 609 (1108)
T 3l9o_A 542 IGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKG 609 (1108)
T ss_dssp SCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHHC
T ss_pred cCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHhcC
Confidence 9999999999997766 347889999999999999 679999999876 44445555543
No 25
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.5e-40 Score=390.13 Aligned_cols=326 Identities=21% Similarity=0.313 Sum_probs=248.2
Q ss_pred ccccCCCCcHHHHHHHHHhcCCCCCCHHHHHHHHH-HHcCCCEEEEecCCChhHHHHHHHHHh----cCCeEEEEcccHH
Q 035988 68 NWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINA-VLSGRDVLVIMAAGGGKSLCYQLPAVL----REGIALVVSPLLS 142 (692)
Q Consensus 68 ~w~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~-il~g~dviv~apTGsGKTl~~~lpal~----~~~~~lvi~Pt~~ 142 (692)
+|. .+++++.+.+.+.+ +||..|+|+|.++++. +.++++++++||||||||++|.+|++. .+++++|++|+++
T Consensus 9 ~~~-~l~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~ 86 (715)
T 2va8_A 9 PIE-DLKLPSNVIEIIKK-RGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRA 86 (715)
T ss_dssp BGG-GSSSCHHHHHHHHT-TSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHH
T ss_pred cHH-HcCCCHHHHHHHHh-CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHH
Confidence 455 67889999999885 7999999999999999 788999999999999999999998862 4789999999999
Q ss_pred HHHHHHHHHHH---cCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEe
Q 035988 143 LIQDQVMCLAA---LGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISID 219 (692)
Q Consensus 143 L~~q~~~~l~~---~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVID 219 (692)
|+.|+++.++. +|+++..++|+....... + ..++|+|+||+++.. +.. .....+.++++||||
T Consensus 87 La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~-----~----~~~~Iiv~Tpe~l~~---~~~--~~~~~l~~~~~vIiD 152 (715)
T 2va8_A 87 LTNEKYLTFKDWELIGFKVAMTSGDYDTDDAW-----L----KNYDIIITTYEKLDS---LWR--HRPEWLNEVNYFVLD 152 (715)
T ss_dssp HHHHHHHHHGGGGGGTCCEEECCSCSSSCCGG-----G----GGCSEEEECHHHHHH---HHH--HCCGGGGGEEEEEEC
T ss_pred HHHHHHHHHHHhhcCCCEEEEEeCCCCCchhh-----c----CCCCEEEEcHHHHHH---HHh--CChhHhhccCEEEEe
Confidence 99999999854 488999988876654321 1 168999999998853 211 123346789999999
Q ss_pred CcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEeccCCCCcce------------
Q 035988 220 EAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLF------------ 287 (692)
Q Consensus 220 EaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~------------ 287 (692)
|||++.+++ +.+.+.. +....++.++++||||+++ ..++.++++.+. +..+.....+.
T Consensus 153 E~H~l~~~~--~~~~l~~---i~~~~~~~~ii~lSATl~n--~~~~~~~l~~~~---~~~~~r~~~l~~~~~~~~~~~~~ 222 (715)
T 2va8_A 153 ELHYLNDPE--RGPVVES---VTIRAKRRNLLALSATISN--YKQIAKWLGAEP---VATNWRPVPLIEGVIYPERKKKE 222 (715)
T ss_dssp SGGGGGCTT--THHHHHH---HHHHHHTSEEEEEESCCTT--HHHHHHHHTCEE---EECCCCSSCEEEEEEEECSSTTE
T ss_pred chhhcCCcc--cchHHHH---HHHhcccCcEEEEcCCCCC--HHHHHHHhCCCc---cCCCCCCCCceEEEEecCCcccc
Confidence 999998765 5555444 2222337899999999985 367778887431 11111111111
Q ss_pred EEEeeccC------cchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCC----------------------
Q 035988 288 YMVREKSS------VGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRG---------------------- 339 (692)
Q Consensus 288 ~~v~~~~~------~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g---------------------- 339 (692)
+.+..... ........+.+.+ ..++++||||++++.++.++..|.+..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~ 298 (715)
T 2va8_A 223 YNVIFKDNTTKKVHGDDAIIAYTLDSL----SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEE 298 (715)
T ss_dssp EEEEETTSCEEEEESSSHHHHHHHHHH----TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCS
T ss_pred eeeecCcchhhhcccchHHHHHHHHHH----hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhh
Confidence 11111110 0122333333333 377999999999999999999998642
Q ss_pred --------------CceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEE----eC-------CCC
Q 035988 340 --------------ISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIH----HS-------LSK 394 (692)
Q Consensus 340 --------------~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~----~~-------~P~ 394 (692)
..+..+||+|+.++|..+++.|++|.++|||||+++++|||+|++++||+ || .|.
T Consensus 299 ~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~ 378 (715)
T 2va8_A 299 GGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEI 378 (715)
T ss_dssp SCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------
T ss_pred ccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcC
Confidence 24899999999999999999999999999999999999999999999999 99 899
Q ss_pred CHHHHHHHHhhcCCCCC--CCeeEeecCCCC
Q 035988 395 SVETYYQESGRAGRDGL--PSECLLFFRPAD 423 (692)
Q Consensus 395 s~~~y~Qr~GRagR~G~--~g~~i~l~~~~d 423 (692)
|..+|.||+|||||.|. +|.|+++++..+
T Consensus 379 s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 379 PIMEYKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp CHHHHHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred CHHHHHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 99999999999999984 799999998876
No 26
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=2.7e-41 Score=395.43 Aligned_cols=325 Identities=22% Similarity=0.310 Sum_probs=248.8
Q ss_pred CcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHH---hcCCeEEEEcccHHHHHHHHHHH
Q 035988 75 WDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAV---LREGIALVVSPLLSLIQDQVMCL 151 (692)
Q Consensus 75 ~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal---~~~~~~lvi~Pt~~L~~q~~~~l 151 (692)
+++.+.+.+++ +||..|+|+|.++++.++++++++++||||||||++|.+|++ ..+++++|++|+++|+.|+++.+
T Consensus 10 l~~~~~~~l~~-~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~~~ 88 (702)
T 2p6r_A 10 ISSYAVGILKE-EGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESF 88 (702)
T ss_dssp HHHHHHHHHHC-C---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHH
T ss_pred cCHHHHHHHHh-CCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHHHHH
Confidence 56677777765 799999999999999999999999999999999999999887 34789999999999999999998
Q ss_pred HH---cCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccC
Q 035988 152 AA---LGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWG 228 (692)
Q Consensus 152 ~~---~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g 228 (692)
+. +|+++..++|+...... ....++|+|+||+++.. +.. .....+.++++|||||||++.+++
T Consensus 89 ~~~~~~g~~v~~~~G~~~~~~~---------~~~~~~Iiv~Tpe~l~~---~l~--~~~~~l~~~~~vIiDE~H~l~~~~ 154 (702)
T 2p6r_A 89 KKWEKIGLRIGISTGDYESRDE---------HLGDCDIIVTTSEKADS---LIR--NRASWIKAVSCLVVDEIHLLDSEK 154 (702)
T ss_dssp TTTTTTTCCEEEECSSCBCCSS---------CSTTCSEEEEEHHHHHH---HHH--TTCSGGGGCCEEEETTGGGGGCTT
T ss_pred HHHHhcCCEEEEEeCCCCcchh---------hccCCCEEEECHHHHHH---HHH--cChhHHhhcCEEEEeeeeecCCCC
Confidence 64 37899999987665431 11278999999998753 111 122336789999999999998876
Q ss_pred CCchHHHHHH-HHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEeccCCCCcceEEE--------eeccC---c
Q 035988 229 HDFRPDYKNL-GILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMV--------REKSS---V 296 (692)
Q Consensus 229 ~~fr~~~~~l-~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v--------~~~~~---~ 296 (692)
+.+.+..+ ..++...++.++++||||+++ ..++.++++.+ .+..+.....+...+ ..... .
T Consensus 155 --r~~~~~~ll~~l~~~~~~~~ii~lSATl~n--~~~~~~~l~~~---~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~ 227 (702)
T 2p6r_A 155 --RGATLEILVTKMRRMNKALRVIGLSATAPN--VTEIAEWLDAD---YYVSDWRPVPLVEGVLCEGTLELFDGAFSTSR 227 (702)
T ss_dssp --THHHHHHHHHHHHHHCTTCEEEEEECCCTT--HHHHHHHTTCE---EEECCCCSSCEEEEEECSSEEEEEETTEEEEE
T ss_pred --cccHHHHHHHHHHhcCcCceEEEECCCcCC--HHHHHHHhCCC---cccCCCCCccceEEEeeCCeeeccCcchhhhh
Confidence 44444432 344455678999999999985 46777888733 122221111111111 11000 0
Q ss_pred chHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHC------------------------------CCceeEec
Q 035988 297 GKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQR------------------------------GISADYYH 346 (692)
Q Consensus 297 ~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~------------------------------g~~v~~~h 346 (692)
.......+.+.+. .++++||||++++.++.++..|.+. +..+..+|
T Consensus 228 ~~~~~~~~~~~~~----~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h 303 (702)
T 2p6r_A 228 RVKFEELVEECVA----ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHH 303 (702)
T ss_dssp ECCHHHHHHHHHH----TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEEC
T ss_pred hhhHHHHHHHHHh----cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEec
Confidence 0013444444443 6789999999999999999998753 23588999
Q ss_pred cCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEE----eC---CCCCHHHHHHHHhhcCCCC--CCCeeEe
Q 035988 347 ADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIH----HS---LSKSVETYYQESGRAGRDG--LPSECLL 417 (692)
Q Consensus 347 ~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~----~~---~P~s~~~y~Qr~GRagR~G--~~g~~i~ 417 (692)
|+|++++|..+++.|++|.++|||||+++++|||+|++++||+ || .|.|..+|.||+|||||.| .+|.|++
T Consensus 304 ~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~ 383 (702)
T 2p6r_A 304 AGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAII 383 (702)
T ss_dssp TTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEE
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEE
Confidence 9999999999999999999999999999999999999999999 66 7899999999999999998 4799999
Q ss_pred ecCCCCHH
Q 035988 418 FFRPADVP 425 (692)
Q Consensus 418 l~~~~d~~ 425 (692)
+++..+..
T Consensus 384 l~~~~~~~ 391 (702)
T 2p6r_A 384 IVGKRDRE 391 (702)
T ss_dssp ECCGGGHH
T ss_pred EecCccHH
Confidence 99988754
No 27
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=4.8e-41 Score=394.32 Aligned_cols=326 Identities=21% Similarity=0.310 Sum_probs=252.0
Q ss_pred CCCCcHHHHHHHHHhcCCCCCCHHHHHHHHH-HHcCCCEEEEecCCChhHHHHHHHHHh----cCCeEEEEcccHHHHHH
Q 035988 72 TFEWDSRADDVRLNVFGIPAYRANQQEIINA-VLSGRDVLVIMAAGGGKSLCYQLPAVL----REGIALVVSPLLSLIQD 146 (692)
Q Consensus 72 ~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~-il~g~dviv~apTGsGKTl~~~lpal~----~~~~~lvi~Pt~~L~~q 146 (692)
.+++++.+.+.+++ +||..|+|+|.++++. +.++++++++||||||||++|.+|++. .+++++|++|+++|+.|
T Consensus 5 ~l~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q 83 (720)
T 2zj8_A 5 ELRVDERIKSTLKE-RGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEE 83 (720)
T ss_dssp GCCSCHHHHHHHHH-TTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHH
T ss_pred hcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHH
Confidence 57789999999986 7999999999999998 889999999999999999999998872 47899999999999999
Q ss_pred HHHHHHH---cCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCccc
Q 035988 147 QVMCLAA---LGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHC 223 (692)
Q Consensus 147 ~~~~l~~---~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~ 223 (692)
+++.+++ +|+++..++|+....... . +.++|+|+||+++.. +.. .....+.++++|||||||+
T Consensus 84 ~~~~~~~l~~~g~~v~~~~G~~~~~~~~-------~--~~~~Iiv~Tpe~l~~---~~~--~~~~~l~~~~~vIiDE~H~ 149 (720)
T 2zj8_A 84 KFQEFQDWEKIGLRVAMATGDYDSKDEW-------L--GKYDIIIATAEKFDS---LLR--HGSSWIKDVKILVADEIHL 149 (720)
T ss_dssp HHHHTGGGGGGTCCEEEECSCSSCCCGG-------G--GGCSEEEECHHHHHH---HHH--HTCTTGGGEEEEEEETGGG
T ss_pred HHHHHHHHHhcCCEEEEecCCCCccccc-------c--CCCCEEEECHHHHHH---HHH--cChhhhhcCCEEEEECCcc
Confidence 9999864 489999999977654321 1 268999999998853 211 1233367899999999999
Q ss_pred ccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEeccCCCCcceEEEe------eccC--
Q 035988 224 CSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVR------EKSS-- 295 (692)
Q Consensus 224 l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~------~~~~-- 295 (692)
+.+++ +.+.+..+ +....++.+++++|||+++ ..++.++++... +........+...+. ....
T Consensus 150 l~~~~--r~~~~~~l--l~~l~~~~~ii~lSATl~n--~~~~~~~l~~~~---~~~~~rp~~l~~~~~~~~~~~~~~~~~ 220 (720)
T 2zj8_A 150 IGSRD--RGATLEVI--LAHMLGKAQIIGLSATIGN--PEELAEWLNAEL---IVSDWRPVKLRRGVFYQGFVTWEDGSI 220 (720)
T ss_dssp GGCTT--THHHHHHH--HHHHBTTBEEEEEECCCSC--HHHHHHHTTEEE---EECCCCSSEEEEEEEETTEEEETTSCE
T ss_pred cCCCc--ccHHHHHH--HHHhhcCCeEEEEcCCcCC--HHHHHHHhCCcc---cCCCCCCCcceEEEEeCCeeeccccch
Confidence 98766 55554442 2222237889999999976 367778876421 211111111111000 0000
Q ss_pred -cchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHC------------------C---------------Cc
Q 035988 296 -VGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQR------------------G---------------IS 341 (692)
Q Consensus 296 -~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~------------------g---------------~~ 341 (692)
........+.+.+. .++++||||+|++.++.++..|.+. + ..
T Consensus 221 ~~~~~~~~~~~~~~~----~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~ 296 (720)
T 2zj8_A 221 DRFSSWEELVYDAIR----KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGG 296 (720)
T ss_dssp EECSSTTHHHHHHHH----TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTT
T ss_pred hhhhHHHHHHHHHHh----CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcC
Confidence 01222344444443 6789999999999999999999753 1 24
Q ss_pred eeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEE----eC----CCCCHHHHHHHHhhcCCCCC--
Q 035988 342 ADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIH----HS----LSKSVETYYQESGRAGRDGL-- 411 (692)
Q Consensus 342 v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~----~~----~P~s~~~y~Qr~GRagR~G~-- 411 (692)
+..+||+|++++|..+++.|++|.++|||||+++++|||+|++++||+ || .|.|..+|.||+|||||.|.
T Consensus 297 v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~ 376 (720)
T 2zj8_A 297 VAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDE 376 (720)
T ss_dssp EEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCS
T ss_pred eeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCC
Confidence 899999999999999999999999999999999999999999999999 66 58999999999999999984
Q ss_pred CCeeEeecCCCCHH
Q 035988 412 PSECLLFFRPADVP 425 (692)
Q Consensus 412 ~g~~i~l~~~~d~~ 425 (692)
.|.|+++++..+..
T Consensus 377 ~G~~~~l~~~~~~~ 390 (720)
T 2zj8_A 377 VGEGIIVSTSDDPR 390 (720)
T ss_dssp EEEEEEECSSSCHH
T ss_pred CceEEEEecCccHH
Confidence 69999999988854
No 28
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=3.9e-41 Score=382.88 Aligned_cols=320 Identities=17% Similarity=0.224 Sum_probs=214.4
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc--------CCeEEEEcccHHHHHHHHHHHHHc----CCCE
Q 035988 91 AYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR--------EGIALVVSPLLSLIQDQVMCLAAL----GIPA 158 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~--------~~~~lvi~Pt~~L~~q~~~~l~~~----gi~~ 158 (692)
.|||+|.++++.++.|+++++.+|||+|||++|++|++.. ++++|||+|+++|+.|+.+.++++ ++++
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 83 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNI 83 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEE
Confidence 6999999999999999999999999999999999998754 789999999999999999999987 8999
Q ss_pred EEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHh-hh-hcCCceEEEEeCcccccccCCCchHHHH
Q 035988 159 HMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEK-CH-HAGRLSLISIDEAHCCSQWGHDFRPDYK 236 (692)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~-~~-~~~~l~~iVIDEaH~l~~~g~~fr~~~~ 236 (692)
..++|+........... . .++|+|+||+++.. .+.. .. .+.++++|||||||++..++. +.....
T Consensus 84 ~~~~g~~~~~~~~~~~~---~---~~~i~v~T~~~l~~------~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~~~~~ 150 (555)
T 3tbk_A 84 ASISGATSDSVSVQHII---E---DNDIIILTPQILVN------NLNNGAIPSLSVFTLMIFDECHNTSKNHP-YNQIMF 150 (555)
T ss_dssp EEECTTTGGGSCHHHHH---H---HCSEEEECHHHHHH------HHHTSSSCCGGGCSEEEETTGGGCSTTCH-HHHHHH
T ss_pred EEEcCCCcchhhHHHHh---c---CCCEEEECHHHHHH------HHhcCcccccccCCEEEEECccccCCcch-HHHHHH
Confidence 99999886543322211 1 58999999998753 2222 12 467799999999999987652 333332
Q ss_pred HHHHHHhh-----CCCCCEEEEecccchhh-------HH---HHHHHhcccceEEEe-------ccCCCCcceEEEeecc
Q 035988 237 NLGILKTQ-----FPDVPMMALTATATQKV-------QN---DLMEMLHIRKCIKFV-------STINRPNLFYMVREKS 294 (692)
Q Consensus 237 ~l~~l~~~-----~~~~~~i~lSAT~~~~~-------~~---~i~~~l~~~~~~~~~-------~~~~r~~l~~~v~~~~ 294 (692)
. .+... .+..++++||||+.... .+ .+...++........ ....+|...+......
T Consensus 151 ~--~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 228 (555)
T 3tbk_A 151 R--YLDHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASR 228 (555)
T ss_dssp H--HHHHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCC
T ss_pred H--HHHhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCc
Confidence 2 22222 25678999999996522 22 222333321111000 1112222222211100
Q ss_pred C-------------------------------------------------------------------------------
Q 035988 295 S------------------------------------------------------------------------------- 295 (692)
Q Consensus 295 ~------------------------------------------------------------------------------- 295 (692)
.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 308 (555)
T 3tbk_A 229 TSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLR 308 (555)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHH
Confidence 0
Q ss_pred -----------------------------------------------------------cchHHHHHHHHHHHHhC--CC
Q 035988 296 -----------------------------------------------------------VGKVVIDEIAKYIQESY--PN 314 (692)
Q Consensus 296 -----------------------------------------------------------~~~~~~~~l~~~l~~~~--~~ 314 (692)
....++..+.+++...+ ..
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~ 388 (555)
T 3tbk_A 309 KYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKP 388 (555)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCC
Confidence 00123334444444321 25
Q ss_pred CCceEEEEeccchHHHHHHHHHHCC------------CceeEeccCCCHHHHHHHHHHHhc-CCCcEEEeccccccccCC
Q 035988 315 SESGIVYCFSRKECEQVAQELRQRG------------ISADYYHADMDINAREKVHMRWSK-NKLQVIVGTVAFGMGINK 381 (692)
Q Consensus 315 ~~~~IIf~~s~~~~e~l~~~L~~~g------------~~v~~~h~~~~~~eR~~~~~~f~~-g~~~ILVaT~~~~~GIDi 381 (692)
+.++||||+++..++.++..|...+ .....+||+|+.++|..+++.|++ |+++|||||+++++|||+
T Consensus 389 ~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDl 468 (555)
T 3tbk_A 389 ETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDI 468 (555)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEET
T ss_pred CceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCcc
Confidence 6899999999999999999999864 344556679999999999999999 999999999999999999
Q ss_pred CCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHHHH
Q 035988 382 PDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQ 427 (692)
Q Consensus 382 p~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~~ 427 (692)
|++++|||||+|+|+..|+||+|| ||. .+|.|++|+++.+....
T Consensus 469 p~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~ 512 (555)
T 3tbk_A 469 AECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEK 512 (555)
T ss_dssp TSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHH
T ss_pred ccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHH
Confidence 999999999999999999999999 998 89999999998876544
No 29
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=2e-40 Score=378.64 Aligned_cols=329 Identities=16% Similarity=0.157 Sum_probs=240.8
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHh---cCCeEEEEcccHHHHHHHHHHHHHc----
Q 035988 82 VRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVL---REGIALVVSPLLSLIQDQVMCLAAL---- 154 (692)
Q Consensus 82 ~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~---~~~~~lvi~Pt~~L~~q~~~~l~~~---- 154 (692)
+.++.+|| .|+|+|..+++.++.|+ |+.|+||+|||++|.+|++. .+..++||+||++||.|..+++..+
T Consensus 75 a~~r~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~l 151 (844)
T 1tf5_A 75 ASRRVTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFL 151 (844)
T ss_dssp HHHHHHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhc
Confidence 34446899 99999999999999999 99999999999999999984 4678999999999999998887664
Q ss_pred CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHH---hhhhcCCceEEEEeCccccc-ccCCC
Q 035988 155 GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLE---KCHHAGRLSLISIDEAHCCS-QWGHD 230 (692)
Q Consensus 155 gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~---~~~~~~~l~~iVIDEaH~l~-~~g~~ 230 (692)
|+++.++.|+.+...+...+ .++|+|+||++|.- ..+.+.+. ....+..+.++||||||.|+ +.+..
T Consensus 152 gl~v~~i~gg~~~~~r~~~~--------~~dIv~gTpgrlgf-D~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~t 222 (844)
T 1tf5_A 152 GLTVGLNLNSMSKDEKREAY--------AADITYSTNNELGF-DYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEART 222 (844)
T ss_dssp TCCEEECCTTSCHHHHHHHH--------HSSEEEEEHHHHHH-HHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTC
T ss_pred CCeEEEEeCCCCHHHHHHhc--------CCCEEEECchhhhH-HHHHHhhhcchhhhcccCCCEEEECchhhhhhhcccc
Confidence 89999999998765433221 58999999998731 12233331 23456789999999999987 65421
Q ss_pred ----------chHHHHHHHHHHhhCC----------CCCEE-----------------EEecccch---hhHHHHH-HHh
Q 035988 231 ----------FRPDYKNLGILKTQFP----------DVPMM-----------------ALTATATQ---KVQNDLM-EML 269 (692)
Q Consensus 231 ----------fr~~~~~l~~l~~~~~----------~~~~i-----------------~lSAT~~~---~~~~~i~-~~l 269 (692)
-...|..+..+...+| ..+++ ++|||.+. .+...+. ..+
T Consensus 223 plIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l 302 (844)
T 1tf5_A 223 PLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVA 302 (844)
T ss_dssp EEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHT
T ss_pred chhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHH
Confidence 0013444444554443 34555 77888653 1111111 111
Q ss_pred -ccc-ceE------------------------------------------------------------------------
Q 035988 270 -HIR-KCI------------------------------------------------------------------------ 275 (692)
Q Consensus 270 -~~~-~~~------------------------------------------------------------------------ 275 (692)
... +.+
T Consensus 303 ~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~ 382 (844)
T 1tf5_A 303 MQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEE 382 (844)
T ss_dssp CCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHH
T ss_pred hhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHH
Confidence 000 000
Q ss_pred ---------EEeccCCCCcceEEEe-eccCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEe
Q 035988 276 ---------KFVSTINRPNLFYMVR-EKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYY 345 (692)
Q Consensus 276 ---------~~~~~~~r~~l~~~v~-~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~ 345 (692)
++..+.++|....... ........+...+.+.+...+..+.++||||+|++.++.++..|+..|+++..+
T Consensus 383 e~~~iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vL 462 (844)
T 1tf5_A 383 EFRNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVL 462 (844)
T ss_dssp HHHHHHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEE
T ss_pred HHHHHhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEe
Confidence 0111233333221100 001123456777777776543367899999999999999999999999999999
Q ss_pred ccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCC--------CccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEe
Q 035988 346 HADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKP--------DVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLL 417 (692)
Q Consensus 346 h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip--------~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~ 417 (692)
||+++..+|..+.+.|+.| .|+|||++++||+|++ ++.+||+|++|.|.+.|+||+||+||.|.+|.++.
T Consensus 463 hg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~ 540 (844)
T 1tf5_A 463 NAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQF 540 (844)
T ss_dssp CSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEE
T ss_pred eCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEE
Confidence 9999988888777767665 5999999999999999 88899999999999999999999999999999999
Q ss_pred ecCCCCH
Q 035988 418 FFRPADV 424 (692)
Q Consensus 418 l~~~~d~ 424 (692)
|++..|.
T Consensus 541 ~vs~eD~ 547 (844)
T 1tf5_A 541 YLSMEDE 547 (844)
T ss_dssp EEETTSS
T ss_pred EecHHHH
Confidence 9998873
No 30
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-40 Score=395.23 Aligned_cols=323 Identities=20% Similarity=0.247 Sum_probs=244.6
Q ss_pred HHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHh---cCCeEEEEcccHHHHHHHHHHHHHcCCCEEE
Q 035988 84 LNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVL---REGIALVVSPLLSLIQDQVMCLAALGIPAHM 160 (692)
Q Consensus 84 ~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~---~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~ 160 (692)
...|+|. |+|+|.++|+++++|++++++||||+|||++|.+|++. .++++||++|+++|+.|+++.+.+....+..
T Consensus 80 ~~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~~vgl 158 (1010)
T 2xgj_A 80 ARTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGL 158 (1010)
T ss_dssp SCCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHSCEEE
T ss_pred HHhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhCCEEE
Confidence 4468885 99999999999999999999999999999999988764 4789999999999999999999986448888
Q ss_pred EecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHH
Q 035988 161 LTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGI 240 (692)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~ 240 (692)
++|+.... ..++|+|+||++|... + ......+.++++|||||||++.+++ +...+.. .
T Consensus 159 ltGd~~~~-------------~~~~IvV~Tpe~L~~~---L--~~~~~~l~~l~lVViDEaH~l~d~~--rg~~~e~--i 216 (1010)
T 2xgj_A 159 MTGDITIN-------------PDAGCLVMTTEILRSM---L--YRGSEVMREVAWVIFDEVHYMRDKE--RGVVWEE--T 216 (1010)
T ss_dssp ECSSCEEC-------------TTCSEEEEEHHHHHHH---H--HHTCTTGGGEEEEEEETGGGGGCTT--THHHHHH--H
T ss_pred EeCCCccC-------------CCCCEEEEcHHHHHHH---H--HcCcchhhcCCEEEEechhhhcccc--hhHHHHH--H
Confidence 88877543 1679999999987531 1 1233456789999999999999887 4444433 2
Q ss_pred HHhhCCCCCEEEEecccchhhHHHHHHHhc---ccceEEEeccCCCCcceEEEe-----------eccC-----------
Q 035988 241 LKTQFPDVPMMALTATATQKVQNDLMEMLH---IRKCIKFVSTINRPNLFYMVR-----------EKSS----------- 295 (692)
Q Consensus 241 l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~---~~~~~~~~~~~~r~~l~~~v~-----------~~~~----------- 295 (692)
+....++.++++||||++.. ..+..+++ .....++........+...+. ....
T Consensus 217 l~~l~~~~~il~LSATi~n~--~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (1010)
T 2xgj_A 217 IILLPDKVRYVFLSATIPNA--MEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAM 294 (1010)
T ss_dssp HHHSCTTCEEEEEECCCTTH--HHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHH
T ss_pred HHhcCCCCeEEEEcCCCCCH--HHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHH
Confidence 33344578999999998764 23444443 112222222221111111111 0000
Q ss_pred ------------------------cc-------hHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCc---
Q 035988 296 ------------------------VG-------KVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGIS--- 341 (692)
Q Consensus 296 ------------------------~~-------~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~--- 341 (692)
+. ...+..+...+... ...++||||+|++.|+.++..|...++.
T Consensus 295 ~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~--~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~ 372 (1010)
T 2xgj_A 295 ASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK--KYNPVIVFSFSKRDCEELALKMSKLDFNSDD 372 (1010)
T ss_dssp HTCC------------------------------CHHHHHHHHHHHH--TCCSEEEEESSHHHHHHHHHTTTTSCCCCHH
T ss_pred HHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhc--CCCCEEEEECCHHHHHHHHHHHHhCCCCChH
Confidence 00 12233455555544 5669999999999999999999765432
Q ss_pred ------------------------------------eeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCcc
Q 035988 342 ------------------------------------ADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVR 385 (692)
Q Consensus 342 ------------------------------------v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~ 385 (692)
+..+||+|++.+|..+++.|++|.++|||||+++++|||+|+++
T Consensus 373 e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~ 452 (1010)
T 2xgj_A 373 EKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKT 452 (1010)
T ss_dssp HHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSE
T ss_pred HHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCce
Confidence 78899999999999999999999999999999999999999999
Q ss_pred EEEE----eCC----CCCHHHHHHHHhhcCCCCCC--CeeEeecCCC-CHHHHHHHHhh
Q 035988 386 FVIH----HSL----SKSVETYYQESGRAGRDGLP--SECLLFFRPA-DVPRQSSMVFY 433 (692)
Q Consensus 386 ~VI~----~~~----P~s~~~y~Qr~GRagR~G~~--g~~i~l~~~~-d~~~~~~l~~~ 433 (692)
+||+ ||. |.|+.+|+||+|||||.|.. |.|++++++. +...+..++..
T Consensus 453 vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~~ 511 (1010)
T 2xgj_A 453 VVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKG 511 (1010)
T ss_dssp EEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHSC
T ss_pred EEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHHhC
Confidence 9999 999 88999999999999999974 9999999876 55566666543
No 31
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=1.6e-40 Score=401.41 Aligned_cols=287 Identities=14% Similarity=0.224 Sum_probs=222.8
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHh---cCCeEEEEcccHHHHHHHHHHHHHc-
Q 035988 79 ADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVL---REGIALVVSPLLSLIQDQVMCLAAL- 154 (692)
Q Consensus 79 ~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~---~~~~~lvi~Pt~~L~~q~~~~l~~~- 154 (692)
+.+.+...+|| .|+|+|.++|+.++.|+|++++||||||||++|++|++. .++++||++||++|+.|+++.++++
T Consensus 67 ~~~~~~~~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~ 145 (1104)
T 4ddu_A 67 FRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLA 145 (1104)
T ss_dssp HHHHHHHHSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhh
Confidence 44566667899 699999999999999999999999999999988888765 5789999999999999999999994
Q ss_pred --CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccc------
Q 035988 155 --GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQ------ 226 (692)
Q Consensus 155 --gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~------ 226 (692)
++++..++|+.+..++......+..+ .++|+|+||++|... +.. ..+.++++|||||||+++.
T Consensus 146 ~~~i~v~~l~Gg~~~~er~~~~~~l~~g--~~~IlV~Tp~rL~~~---l~~----l~~~~l~~lViDEaH~l~~~~r~~D 216 (1104)
T 4ddu_A 146 DEKVKIFGFYSSMKKEEKEKFEKSFEED--DYHILVFSTQFVSKN---REK----LSQKRFDFVFVDDVDAVLKASRNID 216 (1104)
T ss_dssp CTTSCEEEECTTCCTTHHHHHHHHHHTS--CCSEEEEEHHHHHHS---HHH----HHTSCCSEEEESCHHHHTTSSHHHH
T ss_pred CCCCeEEEEeCCCCHHHHHHHHHHHhCC--CCCEEEECHHHHHHH---HHh----hcccCcCEEEEeCCCccccccccch
Confidence 67999999999887666667777765 699999999988532 222 3457899999999998776
Q ss_pred -----cCCCchHH-HHHHHHHHh---------hCCCCCEEEEeccc-chhhHHHH-HHHhcccceEEEeccCCCCcceEE
Q 035988 227 -----WGHDFRPD-YKNLGILKT---------QFPDVPMMALTATA-TQKVQNDL-MEMLHIRKCIKFVSTINRPNLFYM 289 (692)
Q Consensus 227 -----~g~~fr~~-~~~l~~l~~---------~~~~~~~i~lSAT~-~~~~~~~i-~~~l~~~~~~~~~~~~~r~~l~~~ 289 (692)
|| |.+. +..+..... ..++.++++||||+ +..+...+ ...+.+.. .......+++...
T Consensus 217 r~L~~~g--f~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i~v---~~~~~~~~~i~~~ 291 (1104)
T 4ddu_A 217 TLLMMVG--IPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTV---GRLVSVARNITHV 291 (1104)
T ss_dssp HHHHTSS--CCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCCCC---CBCCCCCCCEEEE
T ss_pred hhhHhcC--CCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeEEe---ccCCCCcCCceeE
Confidence 66 7776 444322221 01578999999994 44433222 33333211 1122334444444
Q ss_pred EeeccCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCcee-EeccCCCHHHHHHHHHHHhcCCCcE
Q 035988 290 VREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISAD-YYHADMDINAREKVHMRWSKNKLQV 368 (692)
Q Consensus 290 v~~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~-~~h~~~~~~eR~~~~~~f~~g~~~I 368 (692)
+.... ....+.+++... ++++||||++++.++.++..|+..|+.+. .+||. |.+ ++.|++|+++|
T Consensus 292 ~~~~~-----k~~~L~~ll~~~---~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~V 357 (1104)
T 4ddu_A 292 RISSR-----SKEKLVELLEIF---RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINI 357 (1104)
T ss_dssp EESCC-----CHHHHHHHHHHH---CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSE
T ss_pred EEecC-----HHHHHHHHHHhc---CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCE
Confidence 43331 234566666653 48999999999999999999999999998 99993 555 99999999999
Q ss_pred EEe----ccccccccCCCC-ccEEEEeCCCC
Q 035988 369 IVG----TVAFGMGINKPD-VRFVIHHSLSK 394 (692)
Q Consensus 369 LVa----T~~~~~GIDip~-v~~VI~~~~P~ 394 (692)
||| |+++++|||+|+ |++|||||+|.
T Consensus 358 LVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 358 LIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp EEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred EEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 999 999999999999 99999999998
No 32
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=7.5e-40 Score=364.71 Aligned_cols=318 Identities=19% Similarity=0.256 Sum_probs=240.4
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc----CCeEEEEcccHHHHHHHHHHHHHc-CC---CEEEEe
Q 035988 91 AYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR----EGIALVVSPLLSLIQDQVMCLAAL-GI---PAHMLT 162 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~----~~~~lvi~Pt~~L~~q~~~~l~~~-gi---~~~~~~ 162 (692)
.|+|+|.++++.++.+ ++++.+|||+|||++++++++.. ++++|||+|+++|+.|+.+.+.++ +. ++..++
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~ 87 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALT 87 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEEC
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEee
Confidence 6999999999999999 99999999999999999987754 789999999999999999999986 66 888899
Q ss_pred cCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHHHH
Q 035988 163 STTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILK 242 (692)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~ 242 (692)
|+.........+. .++|+|+||+.+... .......+.++++|||||||++.... .+... ...+.
T Consensus 88 g~~~~~~~~~~~~-------~~~ivv~T~~~l~~~-----~~~~~~~~~~~~~vIiDEaH~~~~~~-~~~~~---~~~~~ 151 (494)
T 1wp9_A 88 GEKSPEERSKAWA-------RAKVIVATPQTIEND-----LLAGRISLEDVSLIVFDEAHRAVGNY-AYVFI---AREYK 151 (494)
T ss_dssp SCSCHHHHHHHHH-------HCSEEEECHHHHHHH-----HHTTSCCTTSCSEEEEETGGGCSTTC-HHHHH---HHHHH
T ss_pred CCcchhhhhhhcc-------CCCEEEecHHHHHHH-----HhcCCcchhhceEEEEECCcccCCCC-cHHHH---HHHHH
Confidence 8887665443332 579999999987531 11233456789999999999987432 12221 12444
Q ss_pred hhCCCCCEEEEecccchh--hHHHHHHHhcccceEEEecc-------CCCCcceEEEeecc-------------------
Q 035988 243 TQFPDVPMMALTATATQK--VQNDLMEMLHIRKCIKFVST-------INRPNLFYMVREKS------------------- 294 (692)
Q Consensus 243 ~~~~~~~~i~lSAT~~~~--~~~~i~~~l~~~~~~~~~~~-------~~r~~l~~~v~~~~------------------- 294 (692)
...+..++++||||+... ....+...++.......... +......+......
T Consensus 152 ~~~~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (494)
T 1wp9_A 152 RQAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALK 231 (494)
T ss_dssp HHCSSCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHH
Confidence 556788899999999732 23344445543322211100 00000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 035988 295 -------------------------------------------------------------------------------- 294 (692)
Q Consensus 295 -------------------------------------------------------------------------------- 294 (692)
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 311 (494)
T 1wp9_A 232 PLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAG 311 (494)
T ss_dssp HHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccc
Confidence
Q ss_pred ---------------------------CcchHHHHHHHHHHHHhC--CCCCceEEEEeccchHHHHHHHHHHCCCceeEe
Q 035988 295 ---------------------------SVGKVVIDEIAKYIQESY--PNSESGIVYCFSRKECEQVAQELRQRGISADYY 345 (692)
Q Consensus 295 ---------------------------~~~~~~~~~l~~~l~~~~--~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~ 345 (692)
.....++..+.+++.... ..+.++||||+++..++.+++.|...|+.+..+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~ 391 (494)
T 1wp9_A 312 STKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRF 391 (494)
T ss_dssp CCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEE
T ss_pred cchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEE
Confidence 011123445556665532 378999999999999999999999999999999
Q ss_pred cc--------CCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEe
Q 035988 346 HA--------DMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLL 417 (692)
Q Consensus 346 h~--------~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~ 417 (692)
|| +|+.++|..+++.|++|+.+|||||+++++|+|+|++++||++++|+|+..|+||+||+||.|. |.++.
T Consensus 392 ~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~ 470 (494)
T 1wp9_A 392 VGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVII 470 (494)
T ss_dssp CCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEE
T ss_pred eccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEE
Confidence 99 9999999999999999999999999999999999999999999999999999999999999998 99999
Q ss_pred ecCCCCHHH
Q 035988 418 FFRPADVPR 426 (692)
Q Consensus 418 l~~~~d~~~ 426 (692)
|+++++...
T Consensus 471 l~~~~t~ee 479 (494)
T 1wp9_A 471 LMAKGTRDE 479 (494)
T ss_dssp EEETTSHHH
T ss_pred EEecCCHHH
Confidence 999987654
No 33
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=5.6e-40 Score=389.16 Aligned_cols=329 Identities=15% Similarity=0.219 Sum_probs=196.1
Q ss_pred HHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc--------CCeEEEEcccHHHHHHHHHHHHHc-
Q 035988 84 LNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR--------EGIALVVSPLLSLIQDQVMCLAAL- 154 (692)
Q Consensus 84 ~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~--------~~~~lvi~Pt~~L~~q~~~~l~~~- 154 (692)
...+|+..|||+|.++|+.++.|+++++++|||+|||++|++|++.. ++++|||+|+++|+.|+.+.++++
T Consensus 241 ~~~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~ 320 (797)
T 4a2q_A 241 PPVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHF 320 (797)
T ss_dssp -------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred hhhcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 33578999999999999999999999999999999999999998754 789999999999999999999986
Q ss_pred ---CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHH-hhh-hcCCceEEEEeCcccccccCC
Q 035988 155 ---GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLE-KCH-HAGRLSLISIDEAHCCSQWGH 229 (692)
Q Consensus 155 ---gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~-~~~-~~~~l~~iVIDEaH~l~~~g~ 229 (692)
++++..++|+.......... .. .++|+|+||+++.. .+. ... .+.++++|||||||++...+
T Consensus 321 ~~~~~~v~~~~g~~~~~~~~~~~---~~---~~~Ivv~Tp~~l~~------~l~~~~~~~~~~~~~iViDEaH~~~~~~- 387 (797)
T 4a2q_A 321 ERQGYSVQGISGENFSNVSVEKV---IE---DSDIIVVTPQILVN------SFEDGTLTSLSIFTLMIFDECHNTTGNH- 387 (797)
T ss_dssp GGGTCCEEEECCC-----CHHHH---HH---TCSEEEECHHHHHH------HHHSSSCCCGGGCSEEEETTGGGCSTTS-
T ss_pred ccCCceEEEEeCCcchhhhHHHh---hC---CCCEEEEchHHHHH------HHHhccccccccCCEEEEECccccCCCc-
Confidence 89999999987654322211 11 68999999998753 222 222 45678999999999998644
Q ss_pred CchHHHHHHHH--HHhhCCCCCEEEEecccchh----------hHHHHHHHhcccceEEEe-------ccCCCCcceEEE
Q 035988 230 DFRPDYKNLGI--LKTQFPDVPMMALTATATQK----------VQNDLMEMLHIRKCIKFV-------STINRPNLFYMV 290 (692)
Q Consensus 230 ~fr~~~~~l~~--l~~~~~~~~~i~lSAT~~~~----------~~~~i~~~l~~~~~~~~~-------~~~~r~~l~~~v 290 (692)
.+......+.. +....+..++++||||+... ....+...++........ ....++...+..
T Consensus 388 ~~~~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~ 467 (797)
T 4a2q_A 388 PYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRL 467 (797)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEE
T ss_pred cHHHHHHHHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEe
Confidence 13332222111 11115567899999999531 122222233221100000 001122211111
Q ss_pred eecc----------------------------------------------------------------------------
Q 035988 291 REKS---------------------------------------------------------------------------- 294 (692)
Q Consensus 291 ~~~~---------------------------------------------------------------------------- 294 (692)
....
T Consensus 468 ~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 547 (797)
T 4a2q_A 468 VKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTE 547 (797)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHH
T ss_pred cCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 1100
Q ss_pred -------------------------------------------------------------CcchHHHHHHHHHHHHhC-
Q 035988 295 -------------------------------------------------------------SVGKVVIDEIAKYIQESY- 312 (692)
Q Consensus 295 -------------------------------------------------------------~~~~~~~~~l~~~l~~~~- 312 (692)
.....++..+.+++...+
T Consensus 548 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~ 627 (797)
T 4a2q_A 548 HLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYR 627 (797)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhc
Confidence 000113334444554422
Q ss_pred -CCCCceEEEEeccchHHHHHHHHHHC------------CCceeEeccCCCHHHHHHHHHHHhc-CCCcEEEeccccccc
Q 035988 313 -PNSESGIVYCFSRKECEQVAQELRQR------------GISADYYHADMDINAREKVHMRWSK-NKLQVIVGTVAFGMG 378 (692)
Q Consensus 313 -~~~~~~IIf~~s~~~~e~l~~~L~~~------------g~~v~~~h~~~~~~eR~~~~~~f~~-g~~~ILVaT~~~~~G 378 (692)
..+.++||||+++..++.++..|+.. |.....+||+|+.++|..+++.|++ |+++|||||+++++|
T Consensus 628 ~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~G 707 (797)
T 4a2q_A 628 YNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEG 707 (797)
T ss_dssp HCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC----
T ss_pred cCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcC
Confidence 36789999999999999999999873 5566778999999999999999999 999999999999999
Q ss_pred cCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHHHH
Q 035988 379 INKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQ 427 (692)
Q Consensus 379 IDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~~ 427 (692)
||+|++++|||||+|+|+..|+||+|| ||. .+|.|++|++..+....
T Consensus 708 IDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ee~ 754 (797)
T 4a2q_A 708 IDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVEN 754 (797)
T ss_dssp ---CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHHHHH
T ss_pred CCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHHHH
Confidence 999999999999999999999999999 999 89999999998776443
No 34
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=2e-40 Score=397.39 Aligned_cols=325 Identities=15% Similarity=0.227 Sum_probs=196.4
Q ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc--------CCeEEEEcccHHHHHHHHHHHHHc---
Q 035988 86 VFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR--------EGIALVVSPLLSLIQDQVMCLAAL--- 154 (692)
Q Consensus 86 ~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~--------~~~~lvi~Pt~~L~~q~~~~l~~~--- 154 (692)
.+|+..|||+|.++|+.++.|+++++.+|||+|||++|++|++.. ++++|||+|+++|+.|+++.++++
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 322 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 456889999999999999999999999999999999999999765 678999999999999999999886
Q ss_pred -CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHh-hh-hcCCceEEEEeCcccccccCCCc
Q 035988 155 -GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEK-CH-HAGRLSLISIDEAHCCSQWGHDF 231 (692)
Q Consensus 155 -gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~-~~-~~~~l~~iVIDEaH~l~~~g~~f 231 (692)
++++..++|+........... . .++|+|+||++|.. .+.. .. .+.++++|||||||++...+. +
T Consensus 323 ~~~~v~~~~G~~~~~~~~~~~~---~---~~~IvI~Tp~~L~~------~l~~~~~~~l~~~~liViDEaH~~~~~~~-~ 389 (936)
T 4a2w_A 323 QGYSVQGISGENFSNVSVEKVI---E---DSDIIVVTPQILVN------SFEDGTLTSLSIFTLMIFDECHNTTGNHP-Y 389 (936)
T ss_dssp TTCCEEEECCC-----CCHHHH---H---HCSEEEECHHHHHH------HHHSSSCCCGGGCSEEEEETGGGCSTTCH-H
T ss_pred cCceEEEEECCcchhhHHHHhc---c---CCCEEEecHHHHHH------HHHcCccccccCCCEEEEECccccCCCcc-H
Confidence 899999999875443211111 1 58999999998753 2222 22 456789999999999987552 3
Q ss_pred hHHHHHHHHH--HhhCCCCCEEEEecccchh-------hHHH---HHHHhcccceEEEe-------ccCCCCcceEEEee
Q 035988 232 RPDYKNLGIL--KTQFPDVPMMALTATATQK-------VQND---LMEMLHIRKCIKFV-------STINRPNLFYMVRE 292 (692)
Q Consensus 232 r~~~~~l~~l--~~~~~~~~~i~lSAT~~~~-------~~~~---i~~~l~~~~~~~~~-------~~~~r~~l~~~v~~ 292 (692)
......+... ....+..++++||||+... ..+. +...++........ ..+.+|...+....
T Consensus 390 ~~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~ 469 (936)
T 4a2w_A 390 NVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVK 469 (936)
T ss_dssp HHHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECC
T ss_pred HHHHHHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecc
Confidence 3333221111 1114567899999999531 1122 22222211100000 00112221111111
Q ss_pred cc------------------------------------------------------------------------------
Q 035988 293 KS------------------------------------------------------------------------------ 294 (692)
Q Consensus 293 ~~------------------------------------------------------------------------------ 294 (692)
..
T Consensus 470 ~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l 549 (936)
T 4a2w_A 470 RRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHL 549 (936)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 00
Q ss_pred -----------------------------------------------------------CcchHHHHHHHHHHHHhC--C
Q 035988 295 -----------------------------------------------------------SVGKVVIDEIAKYIQESY--P 313 (692)
Q Consensus 295 -----------------------------------------------------------~~~~~~~~~l~~~l~~~~--~ 313 (692)
.....++..+.+++.+.+ .
T Consensus 550 ~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~ 629 (936)
T 4a2w_A 550 RKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYN 629 (936)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccC
Confidence 000123334555555533 3
Q ss_pred CCCceEEEEeccchHHHHHHHHHHC------------CCceeEeccCCCHHHHHHHHHHHhc-CCCcEEEeccccccccC
Q 035988 314 NSESGIVYCFSRKECEQVAQELRQR------------GISADYYHADMDINAREKVHMRWSK-NKLQVIVGTVAFGMGIN 380 (692)
Q Consensus 314 ~~~~~IIf~~s~~~~e~l~~~L~~~------------g~~v~~~h~~~~~~eR~~~~~~f~~-g~~~ILVaT~~~~~GID 380 (692)
.+.++||||++++.++.++..|... |.....+||+|+..+|..+++.|++ |+++|||||+++++|||
T Consensus 630 ~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGID 709 (936)
T 4a2w_A 630 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGID 709 (936)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCc
Confidence 6789999999999999999999986 5556677999999999999999999 99999999999999999
Q ss_pred CCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHH
Q 035988 381 KPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVP 425 (692)
Q Consensus 381 ip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~ 425 (692)
+|++++|||||+|+|+..|+||+|| ||. .+|.|++|++..+..
T Consensus 710 lp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 710 IVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (936)
T ss_dssp CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHHH
T ss_pred chhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHH
Confidence 9999999999999999999999999 999 789999999887654
No 35
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=2.1e-38 Score=385.24 Aligned_cols=322 Identities=21% Similarity=0.231 Sum_probs=256.8
Q ss_pred CCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHc----CC--CEEEEecCCChhHHHHHHHHH---hcCCeEEEEcccHH
Q 035988 72 TFEWDSRADDVRLNVFGIPAYRANQQEIINAVLS----GR--DVLVIMAAGGGKSLCYQLPAV---LREGIALVVSPLLS 142 (692)
Q Consensus 72 ~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~----g~--dviv~apTGsGKTl~~~lpal---~~~~~~lvi~Pt~~ 142 (692)
.++.+....+.+...|||. +||+|.++|+.++. |+ |+++++|||+|||++|+++++ ..+..++|++||++
T Consensus 585 ~~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~ 663 (1151)
T 2eyq_A 585 AFKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTL 663 (1151)
T ss_dssp CCCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred CCCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHH
Confidence 4566777788888889995 79999999999987 66 899999999999999988775 34689999999999
Q ss_pred HHHHHHHHHHHc----CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEE
Q 035988 143 LIQDQVMCLAAL----GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISI 218 (692)
Q Consensus 143 L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVI 218 (692)
|+.|+++.+++. ++++..+++..+..+....+..+..+ .++|+|+||+.+. +...+.+++++||
T Consensus 664 La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g--~~dIvV~T~~ll~----------~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 664 LAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEG--KIDILIGTHKLLQ----------SDVKFKDLGLLIV 731 (1151)
T ss_dssp HHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTT--CCSEEEECTHHHH----------SCCCCSSEEEEEE
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcC--CCCEEEECHHHHh----------CCccccccceEEE
Confidence 999999999853 67889999888888887788888776 7999999998653 2345678999999
Q ss_pred eCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEec-cCCCCcceEEEeeccCcc
Q 035988 219 DEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVS-TINRPNLFYMVREKSSVG 297 (692)
Q Consensus 219 DEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~r~~l~~~v~~~~~~~ 297 (692)
||||+ ||... . ..+....++.++++||||+.+........ ++.+...+.. +..+..+...+.... .
T Consensus 732 DEaH~---~g~~~----~--~~l~~l~~~~~vl~lSATp~p~~l~~~~~--~~~~~~~i~~~~~~r~~i~~~~~~~~--~ 798 (1151)
T 2eyq_A 732 DEEHR---FGVRH----K--ERIKAMRANVDILTLTATPIPRTLNMAMS--GMRDLSIIATPPARRLAVKTFVREYD--S 798 (1151)
T ss_dssp ESGGG---SCHHH----H--HHHHHHHTTSEEEEEESSCCCHHHHHHHT--TTSEEEECCCCCCBCBCEEEEEEECC--H
T ss_pred echHh---cChHH----H--HHHHHhcCCCCEEEEcCCCChhhHHHHHh--cCCCceEEecCCCCccccEEEEecCC--H
Confidence 99999 34211 1 23444456788999999998876654433 3333333322 223333433333221 1
Q ss_pred hHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHC--CCceeEeccCCCHHHHHHHHHHHhcCCCcEEEecccc
Q 035988 298 KVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQR--GISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAF 375 (692)
Q Consensus 298 ~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~--g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~ 375 (692)
......+.. ....+++++|||++++.++.+++.|++. ++.+..+||+|+..+|..+++.|++|+++|||||+++
T Consensus 799 ~~i~~~il~----~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~ 874 (1151)
T 2eyq_A 799 MVVREAILR----EILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTII 874 (1151)
T ss_dssp HHHHHHHHH----HHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTT
T ss_pred HHHHHHHHH----HHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcc
Confidence 222333333 2237889999999999999999999987 8899999999999999999999999999999999999
Q ss_pred ccccCCCCccEEEEeCC-CCCHHHHHHHHhhcCCCCCCCeeEeecCCCC
Q 035988 376 GMGINKPDVRFVIHHSL-SKSVETYYQESGRAGRDGLPSECLLFFRPAD 423 (692)
Q Consensus 376 ~~GIDip~v~~VI~~~~-P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d 423 (692)
++|||+|++++||.++. +.++.+|+||+||+||.|+.|.|++++++.+
T Consensus 875 e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 875 ETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp GGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred eeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 99999999999999988 5699999999999999999999999987643
No 36
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=2.5e-40 Score=399.82 Aligned_cols=321 Identities=18% Similarity=0.238 Sum_probs=237.8
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc----CCeEEEEcccHHHHHHHHHHHHHc
Q 035988 79 ADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR----EGIALVVSPLLSLIQDQVMCLAAL 154 (692)
Q Consensus 79 ~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~----~~~~lvi~Pt~~L~~q~~~~l~~~ 154 (692)
+.+.+.+.+||. | |+|.++|+.++.|+|++++||||||||+ |++|++.. ++++||++||++|+.|+.+.++++
T Consensus 46 ~~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l 122 (1054)
T 1gku_B 46 FVEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKY 122 (1054)
T ss_dssp HHHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHH
Confidence 456677789999 9 9999999999999999999999999998 88888753 579999999999999999999875
Q ss_pred ----CC----CEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccc
Q 035988 155 ----GI----PAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQ 226 (692)
Q Consensus 155 ----gi----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~ 226 (692)
++ .+..++|+.....+......+. .++|+|+||++|.. .+.. +.++++|||||||++++
T Consensus 123 ~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~----~~~IlV~TP~~L~~------~l~~---L~~l~~lViDEah~~l~ 189 (1054)
T 1gku_B 123 AEKAGVGTENLIGYYHGRIPKREKENFMQNLR----NFKIVITTTQFLSK------HYRE---LGHFDFIFVDDVDAILK 189 (1054)
T ss_dssp HTTTCCSGGGSEEECCSSCCSHHHHHHHHSGG----GCSEEEEEHHHHHH------CSTT---SCCCSEEEESCHHHHHT
T ss_pred HhhcCCCccceEEEEeCCCChhhHHHHHhhcc----CCCEEEEcHHHHHH------HHHH---hccCCEEEEeChhhhhh
Confidence 56 7889999888776544444333 38999999997753 2222 56899999999999999
Q ss_pred cCCCchHHHHHHHHH-----HhhCCCCCEEEEecccchhhHHHHHHHhcccceEEE-eccCCCCcceEEEeeccCcchHH
Q 035988 227 WGHDFRPDYKNLGIL-----KTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKF-VSTINRPNLFYMVREKSSVGKVV 300 (692)
Q Consensus 227 ~g~~fr~~~~~l~~l-----~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~-~~~~~r~~l~~~v~~~~~~~~~~ 300 (692)
||++++..+..++.. ....+..+++++|||+++. ......++.....+.+ ......+++....... ..
T Consensus 190 ~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~~~-----~k 263 (1054)
T 1gku_B 190 ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAVND-----ES 263 (1054)
T ss_dssp STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEESC-----CC
T ss_pred ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEech-----hH
Confidence 987776666554311 1112467889999999886 3222122211111111 1122233444433321 11
Q ss_pred HHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEe----ccccc
Q 035988 301 IDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVG----TVAFG 376 (692)
Q Consensus 301 ~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVa----T~~~~ 376 (692)
...+.+++.. .++++||||+|++.|+.+++.|+.. +++..+||++. .+++.|++|+.+|||| |++++
T Consensus 264 ~~~L~~ll~~---~~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~ 334 (1054)
T 1gku_B 264 ISTLSSILEK---LGTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLV 334 (1054)
T ss_dssp TTTTHHHHTT---SCSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------
T ss_pred HHHHHHHHhh---cCCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeE
Confidence 2344555543 3678999999999999999999988 99999999983 7889999999999999 99999
Q ss_pred cccCCCCc-cEEEEeCCC--------------------------------------------------------------
Q 035988 377 MGINKPDV-RFVIHHSLS-------------------------------------------------------------- 393 (692)
Q Consensus 377 ~GIDip~v-~~VI~~~~P-------------------------------------------------------------- 393 (692)
+|||+|+| ++|||+|+|
T Consensus 335 rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 414 (1054)
T 1gku_B 335 RGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDV 414 (1054)
T ss_dssp CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSS
T ss_pred eccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccce
Confidence 99999996 999999999
Q ss_pred ---------CCHHHHHHHHhhcCCCCCCC--eeEeecCCCCHHHHHHH
Q 035988 394 ---------KSVETYYQESGRAGRDGLPS--ECLLFFRPADVPRQSSM 430 (692)
Q Consensus 394 ---------~s~~~y~Qr~GRagR~G~~g--~~i~l~~~~d~~~~~~l 430 (692)
.|..+|+||+|||||.|..| .++.++...|...+..+
T Consensus 415 ~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l 462 (1054)
T 1gku_B 415 VVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAF 462 (1054)
T ss_dssp EEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHH
T ss_pred eEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHH
Confidence 79999999999999987765 46666666666554444
No 37
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=1.2e-37 Score=354.79 Aligned_cols=323 Identities=18% Similarity=0.158 Sum_probs=227.5
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHh---cCCeEEEEcccHHHHHHHHHHHHHc---
Q 035988 81 DVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVL---REGIALVVSPLLSLIQDQVMCLAAL--- 154 (692)
Q Consensus 81 ~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~---~~~~~lvi~Pt~~L~~q~~~~l~~~--- 154 (692)
++.++.+|. .|+|+|..+++.++.|+ ++.|+||+|||++|.+|++. .+..++|++||++||.|..+.+..+
T Consensus 65 ea~~R~lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~ 141 (853)
T 2fsf_A 65 EASKRVFGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEF 141 (853)
T ss_dssp HHHHHHHSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 444455787 89999999999999998 99999999999999999974 3678999999999999999887764
Q ss_pred -CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhh-hchHHHHHHH---HhhhhcCCceEEEEeCccccc-ccC
Q 035988 155 -GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKI-SKSKRFMSKL---EKCHHAGRLSLISIDEAHCCS-QWG 228 (692)
Q Consensus 155 -gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l-~~~~~~~~~l---~~~~~~~~l~~iVIDEaH~l~-~~g 228 (692)
|+++.++.|+.+...+...+ +++|+|+||++| .+ .+.+.+ .....+.++.++||||||.++ +.|
T Consensus 142 lgl~v~~i~GG~~~~~r~~~~--------~~dIvvgTpgrl~fD--yLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a 211 (853)
T 2fsf_A 142 LGLTVGINLPGMPAPAKREAY--------AADITYGTNNEYGFD--YLRDNMAFSPEERVQRKLHYALVDEVDSILIDEA 211 (853)
T ss_dssp TTCCEEECCTTCCHHHHHHHH--------HSSEEEEEHHHHHHH--HHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTT
T ss_pred cCCeEEEEeCCCCHHHHHHhc--------CCCEEEECCchhhHH--HHHhhhhccHhHhcccCCcEEEECchHHHHHhcC
Confidence 89999999998764332211 589999999977 22 122222 112456889999999999988 444
Q ss_pred C-------------CchHHHHHHHHHHhhCC---------------------CCCEE-----------------------
Q 035988 229 H-------------DFRPDYKNLGILKTQFP---------------------DVPMM----------------------- 251 (692)
Q Consensus 229 ~-------------~fr~~~~~l~~l~~~~~---------------------~~~~i----------------------- 251 (692)
. .|.+.+. .+....| ..+++
T Consensus 212 ~tpLIiSg~~~~~~~~y~~i~---~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~ 288 (853)
T 2fsf_A 212 RTPLIISGPAEDSSEMYKRVN---KIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGE 288 (853)
T ss_dssp TCEEEEEEC-----------------------------------------------------------------------
T ss_pred cccccccCCCccchhHHHHHH---HHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccc
Confidence 1 1222222 2222221 22222
Q ss_pred -EEecccch---hhHH----------------------------------------------------------------
Q 035988 252 -ALTATATQ---KVQN---------------------------------------------------------------- 263 (692)
Q Consensus 252 -~lSAT~~~---~~~~---------------------------------------------------------------- 263 (692)
++|||.+. .+..
T Consensus 289 ~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It 368 (853)
T 2fsf_A 289 SLYSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASIT 368 (853)
T ss_dssp --------------------------------------------------------------------CCCCCEEEEEEE
T ss_pred cccCcccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceee
Confidence 67777542 1100
Q ss_pred -----------------------HHHHHhcccceEEEeccCCCCcceEEEe-eccCcchHHHHHHHHHHHHhCCCCCceE
Q 035988 264 -----------------------DLMEMLHIRKCIKFVSTINRPNLFYMVR-EKSSVGKVVIDEIAKYIQESYPNSESGI 319 (692)
Q Consensus 264 -----------------------~i~~~l~~~~~~~~~~~~~r~~l~~~v~-~~~~~~~~~~~~l~~~l~~~~~~~~~~I 319 (692)
.+.+..++ .++.-+.++|....... ........++..+.+.+......+.++|
T Consensus 369 ~qnyfr~Y~kl~GmTGTa~te~~ef~~iY~l---~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvL 445 (853)
T 2fsf_A 369 FQNYFRLYEKLAGMTGTADTEAFEFSSIYKL---DTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVL 445 (853)
T ss_dssp HHHHHTTSSEEEEEECTTCCCHHHHHHHHCC---EEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEE
T ss_pred hHHHHhhhhhhhcCCCCchhHHHHHHHHhCC---cEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEE
Confidence 00000000 11122334443322110 0011235677888888876544788999
Q ss_pred EEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCC----------------
Q 035988 320 VYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPD---------------- 383 (692)
Q Consensus 320 If~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~---------------- 383 (692)
|||+|++.++.++..|+..|+++..+||++...++..+.+.|+.| .|+|||+++|||+|++.
T Consensus 446 Vft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~ 523 (853)
T 2fsf_A 446 VGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTA 523 (853)
T ss_dssp EEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCS
T ss_pred EEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchh
Confidence 999999999999999999999999999999999999999999988 59999999999999997
Q ss_pred ----------------c-----cEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCH
Q 035988 384 ----------------V-----RFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADV 424 (692)
Q Consensus 384 ----------------v-----~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~ 424 (692)
| .+||+++.|.|...|.|++||+||.|.+|.++.|++..|.
T Consensus 524 ~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 524 EQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred HHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 3 5999999999999999999999999999999999998873
No 38
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=4.8e-37 Score=349.88 Aligned_cols=331 Identities=16% Similarity=0.147 Sum_probs=243.7
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHh---cCCeEEEEcccHHHHHHHHHHHHHc--
Q 035988 80 DDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVL---REGIALVVSPLLSLIQDQVMCLAAL-- 154 (692)
Q Consensus 80 ~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~---~~~~~lvi~Pt~~L~~q~~~~l~~~-- 154 (692)
.++.++.+|+ .|+|+|..+++.++.|+ |+.|+||+|||++|.+|+++ .+..++||+||++|+.|..+++..+
T Consensus 101 rEa~~R~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~ 177 (922)
T 1nkt_A 101 REAAWRVLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHR 177 (922)
T ss_dssp HHHHHHHHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHHh
Confidence 3455566899 89999999999999998 99999999999999999974 3678999999999999988887654
Q ss_pred --CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHH---hhhhcCCceEEEEeCccccc-ccC
Q 035988 155 --GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLE---KCHHAGRLSLISIDEAHCCS-QWG 228 (692)
Q Consensus 155 --gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~---~~~~~~~l~~iVIDEaH~l~-~~g 228 (692)
|+++.++.|+.+...+...+ .++|+|+||++|.- ..+.+.+. ....+..+.++||||||.|+ +.+
T Consensus 178 ~lGLsv~~i~gg~~~~~r~~~y--------~~DIvygTpgrlgf-DyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDea 248 (922)
T 1nkt_A 178 FLGLQVGVILATMTPDERRVAY--------NADITYGTNNEFGF-DYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEA 248 (922)
T ss_dssp HTTCCEEECCTTCCHHHHHHHH--------HSSEEEEEHHHHHH-HHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGG
T ss_pred hcCCeEEEEeCCCCHHHHHHhc--------CCCEEEECchHhhH-HHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcC
Confidence 99999999998765433222 58999999998721 12222221 23456789999999999987 432
Q ss_pred C----------CchHHHHHHHHHHhhCC----------CCCEE-----------------EEecccch---hhHHHHHH-
Q 035988 229 H----------DFRPDYKNLGILKTQFP----------DVPMM-----------------ALTATATQ---KVQNDLME- 267 (692)
Q Consensus 229 ~----------~fr~~~~~l~~l~~~~~----------~~~~i-----------------~lSAT~~~---~~~~~i~~- 267 (692)
. .-...|..+..+...+| ..+++ ++|||.+. .+...+..
T Consensus 249 rtPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~ 328 (922)
T 1nkt_A 249 RTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAK 328 (922)
T ss_dssp GSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHH
T ss_pred ccceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHH
Confidence 1 01233444445555554 45566 78888653 22111111
Q ss_pred Hh-cccc-------e-----------------------------------------------------------------
Q 035988 268 ML-HIRK-------C----------------------------------------------------------------- 274 (692)
Q Consensus 268 ~l-~~~~-------~----------------------------------------------------------------- 274 (692)
.+ .... .
T Consensus 329 ~l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te 408 (922)
T 1nkt_A 329 ELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTE 408 (922)
T ss_dssp HHCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGG
T ss_pred HHhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhH
Confidence 11 1000 0
Q ss_pred ----------EEEeccCCCCcceEEEe-eccCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCcee
Q 035988 275 ----------IKFVSTINRPNLFYMVR-EKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISAD 343 (692)
Q Consensus 275 ----------~~~~~~~~r~~l~~~v~-~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~ 343 (692)
.++.-+.++|....... ........++..+.+.+......+.++||||+|++.++.|+..|+..|+++.
T Consensus 409 ~~Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~ 488 (922)
T 1nkt_A 409 AAELHEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHN 488 (922)
T ss_dssp HHHHHHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEE
Confidence 01111223332221100 0011234567778887765544678999999999999999999999999999
Q ss_pred EeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCc---------------------------------------
Q 035988 344 YYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDV--------------------------------------- 384 (692)
Q Consensus 344 ~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v--------------------------------------- 384 (692)
.+||++...++..+.+.|+.| .|+|||+++|||+|++.+
T Consensus 489 vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (922)
T 1nkt_A 489 VLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEE 566 (922)
T ss_dssp EECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHH
T ss_pred EecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHH
Confidence 999999988888888888888 599999999999999975
Q ss_pred -------------cEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCH
Q 035988 385 -------------RFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADV 424 (692)
Q Consensus 385 -------------~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~ 424 (692)
.+||+++.|.|...|.|++||+||.|.+|.++.|++..|.
T Consensus 567 ~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 567 ASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp TTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred HHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 5999999999999999999999999999999999998875
No 39
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2.1e-37 Score=386.58 Aligned_cols=331 Identities=18% Similarity=0.250 Sum_probs=244.9
Q ss_pred CCCCCCHHHHHHHHHHHc-CCCEEEEecCCChhHHHHHHHHHhc-----CCeEEEEcccHHHHHHHHHHHHH-----cCC
Q 035988 88 GIPAYRANQQEIINAVLS-GRDVLVIMAAGGGKSLCYQLPAVLR-----EGIALVVSPLLSLIQDQVMCLAA-----LGI 156 (692)
Q Consensus 88 g~~~~r~~Q~~ai~~il~-g~dviv~apTGsGKTl~~~lpal~~-----~~~~lvi~Pt~~L~~q~~~~l~~-----~gi 156 (692)
+|+.|+|+|.++++.++. +++++++||||||||++|.+|++.. ++++||++|+++|+.|.++.+++ .|+
T Consensus 923 ~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~ 1002 (1724)
T 4f92_B 923 KFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNK 1002 (1724)
T ss_dssp TCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCC
T ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCC
Confidence 688999999999999986 5679999999999999999998642 57899999999999999998865 377
Q ss_pred CEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCC-CchHHH
Q 035988 157 PAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGH-DFRPDY 235 (692)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~-~fr~~~ 235 (692)
++..++|+...... .+. .++|+|+|||++.. +.........+.++++|||||+|++.+... .+...+
T Consensus 1003 ~V~~ltGd~~~~~~-----~~~----~~~IiV~TPEkld~---llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il 1070 (1724)
T 4f92_B 1003 KVVLLTGETSTDLK-----LLG----KGNIIISTPEKWDI---LSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVIC 1070 (1724)
T ss_dssp CEEECCSCHHHHHH-----HHH----HCSEEEECHHHHHH---HHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHH
T ss_pred EEEEEECCCCcchh-----hcC----CCCEEEECHHHHHH---HHhCcccccccceeeEEEeechhhcCCCCCccHHHHH
Confidence 88888887543221 111 57999999998742 221112223456899999999999875321 111222
Q ss_pred HHHHHHHhh-CCCCCEEEEecccchhhHHHHHHHhcccceEE-EeccCCCCc-ceEEEeeccCcc-h----HHHHHHHHH
Q 035988 236 KNLGILKTQ-FPDVPMMALTATATQKVQNDLMEMLHIRKCIK-FVSTINRPN-LFYMVREKSSVG-K----VVIDEIAKY 307 (692)
Q Consensus 236 ~~l~~l~~~-~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~-~~~~~~r~~-l~~~v~~~~~~~-~----~~~~~l~~~ 307 (692)
.++..+... .+++++++||||.++ ..++.+||+...... ...+..||. +...+....... . .....+...
T Consensus 1071 ~rl~~i~~~~~~~~riI~lSATl~N--~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~ 1148 (1724)
T 4f92_B 1071 SRMRYISSQIERPIRIVALSSSLSN--AKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHA 1148 (1724)
T ss_dssp HHHHHHHHTTSSCCEEEEEESCBTT--HHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHHHHHH
T ss_pred HHHHHHHhhcCCCceEEEEeCCCCC--HHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcchHHHH
Confidence 233323333 357899999999986 578899998765322 233444553 332222221111 1 112233444
Q ss_pred HHHhCCCCCceEEEEeccchHHHHHHHHHHC----------------------------------CCceeEeccCCCHHH
Q 035988 308 IQESYPNSESGIVYCFSRKECEQVAQELRQR----------------------------------GISADYYHADMDINA 353 (692)
Q Consensus 308 l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~----------------------------------g~~v~~~h~~~~~~e 353 (692)
+... ..++++||||+|++.|+.++..|... ...+.++||||++++
T Consensus 1149 i~~~-~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~ 1227 (1724)
T 4f92_B 1149 ITKH-SPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPME 1227 (1724)
T ss_dssp HHHH-CSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHH
T ss_pred HHHh-cCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHH
Confidence 4444 37889999999999999988777431 224789999999999
Q ss_pred HHHHHHHHhcCCCcEEEeccccccccCCCCccEEEE----------eCCCCCHHHHHHHHhhcCCCCC--CCeeEeecCC
Q 035988 354 REKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIH----------HSLSKSVETYYQESGRAGRDGL--PSECLLFFRP 421 (692)
Q Consensus 354 R~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~----------~~~P~s~~~y~Qr~GRagR~G~--~g~~i~l~~~ 421 (692)
|..+.+.|++|.++|||||+.+++|||+|++++||. ...|.++.+|.||+|||||.|. .|.|++++..
T Consensus 1228 R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~ 1307 (1724)
T 4f92_B 1228 RRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQG 1307 (1724)
T ss_dssp HHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEG
T ss_pred HHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecc
Confidence 999999999999999999999999999999999993 3357799999999999999997 5999999999
Q ss_pred CCHHHHHHHHhh
Q 035988 422 ADVPRQSSMVFY 433 (692)
Q Consensus 422 ~d~~~~~~l~~~ 433 (692)
.+....+.++..
T Consensus 1308 ~~~~~~~~ll~~ 1319 (1724)
T 4f92_B 1308 SKKDFFKKFLYE 1319 (1724)
T ss_dssp GGHHHHHHHTTS
T ss_pred hHHHHHHHHhCC
Confidence 888888887654
No 40
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2.7e-37 Score=385.61 Aligned_cols=335 Identities=21% Similarity=0.247 Sum_probs=244.3
Q ss_pred HHhc-CCCCCCHHHHHHHHHHHc-CCCEEEEecCCChhHHHHHHHHHhc--------------CCeEEEEcccHHHHHHH
Q 035988 84 LNVF-GIPAYRANQQEIINAVLS-GRDVLVIMAAGGGKSLCYQLPAVLR--------------EGIALVVSPLLSLIQDQ 147 (692)
Q Consensus 84 ~~~f-g~~~~r~~Q~~ai~~il~-g~dviv~apTGsGKTl~~~lpal~~--------------~~~~lvi~Pt~~L~~q~ 147 (692)
+..| ||..|+++|+++++.++. +++++++||||||||++|.+|++.. +.++|+|+|+++|++|+
T Consensus 71 ~~~f~g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~ 150 (1724)
T 4f92_B 71 QAGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEM 150 (1724)
T ss_dssp STTCTTCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHH
T ss_pred HHhcCCCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHH
Confidence 3345 799999999999999885 7899999999999999999998732 45899999999999999
Q ss_pred HHHHHH----cCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCccc
Q 035988 148 VMCLAA----LGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHC 223 (692)
Q Consensus 148 ~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~ 223 (692)
++.+++ +|+++..++|+....... ...++|+|+|||++.. +.........+.++++|||||+|.
T Consensus 151 ~~~l~~~~~~~gi~V~~~tGd~~~~~~~---------~~~~~IlVtTpEkld~---llr~~~~~~~l~~v~~vIiDEvH~ 218 (1724)
T 4f92_B 151 VGSFGKRLATYGITVAELTGDHQLCKEE---------ISATQIIVCTPEKWDI---ITRKGGERTYTQLVRLIILDEIHL 218 (1724)
T ss_dssp HHHHHHHHTTTTCCEEECCSSCSSCCTT---------GGGCSEEEECHHHHHH---HTTSSTTHHHHTTEEEEEETTGGG
T ss_pred HHHHHHHHhhCCCEEEEEECCCCCCccc---------cCCCCEEEECHHHHHH---HHcCCccchhhcCcCEEEEecchh
Confidence 998875 489999999987654321 1168999999998742 111111112357899999999998
Q ss_pred ccc-cCCCchHHHHHHH-HHHhhCCCCCEEEEecccchhhHHHHHHHhcccc--eEEEeccCCCC-cceEEEeeccCc-c
Q 035988 224 CSQ-WGHDFRPDYKNLG-ILKTQFPDVPMMALTATATQKVQNDLMEMLHIRK--CIKFVSTINRP-NLFYMVREKSSV-G 297 (692)
Q Consensus 224 l~~-~g~~fr~~~~~l~-~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~--~~~~~~~~~r~-~l~~~v~~~~~~-~ 297 (692)
+.+ +|......+.++. ......+++++|+||||.++ .+++.++|+... ...+..+..|| .+...+...... .
T Consensus 219 l~d~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N--~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~ 296 (1724)
T 4f92_B 219 LHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPN--YEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKA 296 (1724)
T ss_dssp GGSTTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTT--HHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCH
T ss_pred cCCccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCC--HHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcch
Confidence 854 1111111111211 12234578899999999986 567889997642 22333333444 232222221111 1
Q ss_pred hHHHH----HHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHC-----------------------------------
Q 035988 298 KVVID----EIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQR----------------------------------- 338 (692)
Q Consensus 298 ~~~~~----~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~----------------------------------- 338 (692)
..... .+.+.+.+. ..++++||||+|++.|+.++..|.+.
T Consensus 297 ~~~~~~~~~~~~~~v~~~-~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 375 (1724)
T 4f92_B 297 IKRFQIMNEIVYEKIMEH-AGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKD 375 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTC-CSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHH
T ss_pred hhhhHHHHHHHHHHHHHH-hcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHH
Confidence 11112 222333332 35679999999999999999888641
Q ss_pred --CCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEE----eC------CCCCHHHHHHHHhhc
Q 035988 339 --GISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIH----HS------LSKSVETYYQESGRA 406 (692)
Q Consensus 339 --g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~----~~------~P~s~~~y~Qr~GRa 406 (692)
...++++||||+.++|..+.+.|++|.++|||||+++++|||+|.+++||+ |+ .|.++.+|.||+|||
T Consensus 376 ~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRA 455 (1724)
T 4f92_B 376 LLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRA 455 (1724)
T ss_dssp HTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTB
T ss_pred HhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhc
Confidence 124789999999999999999999999999999999999999999999996 43 356899999999999
Q ss_pred CCCCC--CCeeEeecCCCCHHHHHHHHhh
Q 035988 407 GRDGL--PSECLLFFRPADVPRQSSMVFY 433 (692)
Q Consensus 407 gR~G~--~g~~i~l~~~~d~~~~~~l~~~ 433 (692)
||.|. .|.++++.+..+......++..
T Consensus 456 GR~g~d~~G~~ii~~~~~~~~~~~~ll~~ 484 (1724)
T 4f92_B 456 GRPQYDTKGEGILITSHGELQYYLSLLNQ 484 (1724)
T ss_dssp SCTTTCSCEEEEEEEESTTCCHHHHHTTT
T ss_pred cCCCCCCccEEEEEecchhHHHHHHHHcC
Confidence 99886 4999999999988877777654
No 41
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=4.1e-38 Score=349.08 Aligned_cols=285 Identities=15% Similarity=0.141 Sum_probs=210.6
Q ss_pred CCCCCCHHHHHHHHHHHcCCCE-EEEecCCChhHHHHHHHHHh----cCCeEEEEcccHHHHHHHHHHHHHcCCCEEEEe
Q 035988 88 GIPAYRANQQEIINAVLSGRDV-LVIMAAGGGKSLCYQLPAVL----REGIALVVSPLLSLIQDQVMCLAALGIPAHMLT 162 (692)
Q Consensus 88 g~~~~r~~Q~~ai~~il~g~dv-iv~apTGsGKTl~~~lpal~----~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~ 162 (692)
|+.+++|+|+ +|+.+++++++ +++||||||||++|++|++. .++++||++||++|+.|+.+.+..+ .+....
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~--~v~~~~ 77 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALRGL--PIRYQT 77 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTS--CEEECC
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhcCc--eeeeee
Confidence 6788999985 79999999887 99999999999999999864 3679999999999999999998643 333322
Q ss_pred cCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHHHH
Q 035988 163 STTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILK 242 (692)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~ 242 (692)
+.... ...+...|.++|++.+.. .+.....+.++++|||||||++ +.+ +......+ ...
T Consensus 78 ~~~~~-----------~~~~~~~i~~~t~~~l~~------~l~~~~~l~~~~~iViDEah~~-~~~--~~~~~~~~-~~~ 136 (451)
T 2jlq_A 78 PAVKS-----------DHTGREIVDLMCHATFTT------RLLSSTRVPNYNLIVMDEAHFT-DPC--SVAARGYI-STR 136 (451)
T ss_dssp TTCSC-----------CCCSSCCEEEEEHHHHHH------HHHHCSCCCCCSEEEEETTTCC-SHH--HHHHHHHH-HHH
T ss_pred ccccc-----------cCCCCceEEEEChHHHHH------HhhCcccccCCCEEEEeCCccC-Ccc--hHHHHHHH-HHh
Confidence 22211 012256788999997642 2334455778999999999987 222 22222221 223
Q ss_pred hhCCCCCEEEEecccchhhHHHHHHHhcccceEEEeccCCCCcceEEEeeccCcchHHHHHHHHHHHHhCCCCCceEEEE
Q 035988 243 TQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYC 322 (692)
Q Consensus 243 ~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~ 322 (692)
...++.++++||||++..+... +. .....+......|...+ ..+..++.+ ..+++||||
T Consensus 137 ~~~~~~~~i~~SAT~~~~~~~~----~~-~~~~~~~~~~~~p~~~~-------------~~~~~~l~~---~~~~~lVF~ 195 (451)
T 2jlq_A 137 VEMGEAAAIFMTATPPGSTDPF----PQ-SNSPIEDIEREIPERSW-------------NTGFDWITD---YQGKTVWFV 195 (451)
T ss_dssp HHTTSCEEEEECSSCTTCCCSS----CC-CSSCEEEEECCCCSSCC-------------SSSCHHHHH---CCSCEEEEC
T ss_pred hcCCCceEEEEccCCCccchhh----hc-CCCceEecCccCCchhh-------------HHHHHHHHh---CCCCEEEEc
Confidence 3456889999999998754321 11 11111111111111000 012233333 467999999
Q ss_pred eccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEEeC-----------
Q 035988 323 FSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHS----------- 391 (692)
Q Consensus 323 ~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~----------- 391 (692)
+|++.++.+++.|+..|+.+..+||++. ..+++.|++|+.+|||||+++++|||+|+ ++||++|
T Consensus 196 ~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~ 270 (451)
T 2jlq_A 196 PSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDG 270 (451)
T ss_dssp SSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSS
T ss_pred CCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccc
Confidence 9999999999999999999999999764 57899999999999999999999999999 9999999
Q ss_pred ---------CCCCHHHHHHHHhhcCCCCC-CCeeEeecCCC
Q 035988 392 ---------LSKSVETYYQESGRAGRDGL-PSECLLFFRPA 422 (692)
Q Consensus 392 ---------~P~s~~~y~Qr~GRagR~G~-~g~~i~l~~~~ 422 (692)
.|.|.++|+||+||+||.|. +|.|++|+...
T Consensus 271 ~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~~ 311 (451)
T 2jlq_A 271 PERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDP 311 (451)
T ss_dssp SCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred cceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCCc
Confidence 99999999999999999998 89998887543
No 42
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=1.1e-37 Score=351.71 Aligned_cols=302 Identities=15% Similarity=0.111 Sum_probs=221.5
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHh----cCCeEEEEcccHHHHHHHHHHHHHcC----CCEEEEe
Q 035988 91 AYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVL----REGIALVVSPLLSLIQDQVMCLAALG----IPAHMLT 162 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~----~~~~~lvi~Pt~~L~~q~~~~l~~~g----i~~~~~~ 162 (692)
.|||+|.++++.++.++++++++|||+|||++|++|+.. ..+++|||+|+++|+.|+.+.+++++ +.+..+.
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~ 192 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIG 192 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECG
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEe
Confidence 799999999999999999999999999999999988875 23599999999999999999999873 4667777
Q ss_pred cCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHHHH
Q 035988 163 STTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILK 242 (692)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~ 242 (692)
++...... ..+..+|+|+||+.+... ....+.++++|||||||++.. +. +..+.
T Consensus 193 ~~~~~~~~---------~~~~~~I~i~T~~~l~~~--------~~~~~~~~~liIiDE~H~~~~------~~---~~~il 246 (510)
T 2oca_A 193 GGASKDDK---------YKNDAPVVVGTWQTVVKQ--------PKEWFSQFGMMMNDECHLATG------KS---ISSII 246 (510)
T ss_dssp GGCCTTGG---------GCTTCSEEEEEHHHHTTS--------CGGGGGGEEEEEEETGGGCCH------HH---HHHHG
T ss_pred cCCccccc---------cccCCcEEEEeHHHHhhc--------hhhhhhcCCEEEEECCcCCCc------cc---HHHHH
Confidence 77665432 123789999999987642 112446799999999999764 22 22344
Q ss_pred hhC-CCCCEEEEecccchhhHHHHHHHhcccceEEEeccC--------CCCcceEEEeecc-----------Ccc-----
Q 035988 243 TQF-PDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTI--------NRPNLFYMVREKS-----------SVG----- 297 (692)
Q Consensus 243 ~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~--------~r~~l~~~v~~~~-----------~~~----- 297 (692)
..+ +..++++||||++...... ....++..+..+..+. -.+.....+.... ...
T Consensus 247 ~~~~~~~~~l~lSATp~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (510)
T 2oca_A 247 SGLNNCMFKFGLSGSLRDGKANI-MQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKI 325 (510)
T ss_dssp GGCTTCCEEEEEESCGGGCSSCH-HHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHH
T ss_pred HhcccCcEEEEEEeCCCCCcccH-HHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHH
Confidence 444 5678899999997653221 1111111111111111 0111111110000 000
Q ss_pred ----hHHHHHHHHHHHHhCCCCC-ceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEec
Q 035988 298 ----KVVIDEIAKYIQESYPNSE-SGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGT 372 (692)
Q Consensus 298 ----~~~~~~l~~~l~~~~~~~~-~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT 372 (692)
......+.+++......++ ++||||+ ++.++.+++.|.+.+.++..+||+|+.++|..+++.|++|+.+|||||
T Consensus 326 ~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T 404 (510)
T 2oca_A 326 ITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVAS 404 (510)
T ss_dssp HHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEE
T ss_pred HhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEE
Confidence 1122334555554433344 4555555 899999999999998899999999999999999999999999999999
Q ss_pred -cccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecC
Q 035988 373 -VAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFR 420 (692)
Q Consensus 373 -~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~ 420 (692)
+++++|+|+|++++||++++|.|+..|+|++||+||.|..+.++++|+
T Consensus 405 ~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 405 YGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp HHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred cChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 999999999999999999999999999999999999999886666665
No 43
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1.3e-37 Score=347.73 Aligned_cols=293 Identities=17% Similarity=0.197 Sum_probs=221.6
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHcCCC-EEEEecCCChhH
Q 035988 91 AYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMCLAALGIP-AHMLTSTTSKED 169 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~~~~~lvi~Pt~~L~~q~~~~l~~~gi~-~~~~~~~~~~~~ 169 (692)
.|+|+|.++++.++.++++++++|||+|||++|+.++...+..+||++|+++|+.|+.+++.++|++ +..++|+...
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~-- 170 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-- 170 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC--
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC--
Confidence 6999999999999999999999999999999999999888999999999999999999999999999 8888876542
Q ss_pred HHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCC
Q 035988 170 EKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVP 249 (692)
Q Consensus 170 ~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~ 249 (692)
..+|+|+||+.+.... +.+ ..++++|||||||++...+ |+. +...++..+
T Consensus 171 -------------~~~Ivv~T~~~l~~~~---~~~-----~~~~~liIvDEaH~~~~~~--~~~-------~~~~~~~~~ 220 (472)
T 2fwr_A 171 -------------LKPLTVSTYDSAYVNA---EKL-----GNRFMLLIFDEVHHLPAES--YVQ-------IAQMSIAPF 220 (472)
T ss_dssp -------------CCSEEEEEHHHHHHTH---HHH-----TTTCSEEEEETGGGTTSTT--THH-------HHHTCCCSE
T ss_pred -------------cCCEEEEEcHHHHHHH---HHh-----cCCCCEEEEECCcCCCChH--HHH-------HHHhcCCCe
Confidence 5789999999875321 111 1469999999999998655 432 445567778
Q ss_pred EEEEecccchhhH--HHHHHHhc---------------ccceEE--EeccCC-------------------CCcce----
Q 035988 250 MMALTATATQKVQ--NDLMEMLH---------------IRKCIK--FVSTIN-------------------RPNLF---- 287 (692)
Q Consensus 250 ~i~lSAT~~~~~~--~~i~~~l~---------------~~~~~~--~~~~~~-------------------r~~l~---- 287 (692)
+++||||+..... ..+..+++ +..... +..... ..++.
T Consensus 221 ~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 300 (472)
T 2fwr_A 221 RLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRA 300 (472)
T ss_dssp EEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCC
T ss_pred EEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccch
Confidence 9999999973210 01111111 111110 000000 00000
Q ss_pred --E--EEe----ec---------------cCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeE
Q 035988 288 --Y--MVR----EK---------------SSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADY 344 (692)
Q Consensus 288 --~--~v~----~~---------------~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~ 344 (692)
+ .+. .. ......+...+.+++... .++++||||++++.++.+++.|. +..
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~k~lvF~~~~~~~~~l~~~l~-----~~~ 373 (472)
T 2fwr_A 301 EDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERH--RKDKIIIFTRHNELVYRISKVFL-----IPA 373 (472)
T ss_dssp SSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHT--SSSCBCCBCSCHHHHHHHHHHTT-----CCB
T ss_pred hhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHhC-----cce
Confidence 0 000 00 000123456677777764 78999999999999999999883 668
Q ss_pred eccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCC-CeeE--eecCC
Q 035988 345 YHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLP-SECL--LFFRP 421 (692)
Q Consensus 345 ~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~-g~~i--~l~~~ 421 (692)
+||+++..+|..+++.|++|+++|||||+++++|+|+|++++||+++.|.|+..|+|++||+||.|.. +.++ .+++.
T Consensus 374 ~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~ 453 (472)
T 2fwr_A 374 ITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISR 453 (472)
T ss_dssp CCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEEC
T ss_pred eeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999954 3444 44444
Q ss_pred C
Q 035988 422 A 422 (692)
Q Consensus 422 ~ 422 (692)
+
T Consensus 454 ~ 454 (472)
T 2fwr_A 454 G 454 (472)
T ss_dssp S
T ss_pred C
Confidence 3
No 44
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=2.5e-36 Score=353.48 Aligned_cols=328 Identities=13% Similarity=0.167 Sum_probs=237.6
Q ss_pred cccccccCCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHc-CCCEEEEecCCChhHHHHHHHHHhc--------CCeEE
Q 035988 65 AVENWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLS-GRDVLVIMAAGGGKSLCYQLPAVLR--------EGIAL 135 (692)
Q Consensus 65 ~~~~w~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~-g~dviv~apTGsGKTl~~~lpal~~--------~~~~l 135 (692)
++..|. .+++++.+.+.+... + ..|++.|+++|+.++. +++++++||||+|||+ ++|++.. +..++
T Consensus 70 ~~~~f~-~~~l~~~~~~~l~~r-~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~~~~g~~il 144 (773)
T 2xau_A 70 KINPFT-GREFTPKYVDILKIR-R-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMPHLENTQVA 144 (773)
T ss_dssp SBCTTT-CSBCCHHHHHHHHHH-T-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCGGGGTCEEE
T ss_pred CCCCcc-ccCCCHHHHHHHHHh-h-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccccCCCceEE
Confidence 345566 678899999999876 4 5788899999988875 5679999999999999 5665521 45699
Q ss_pred EEcccHHHHHHHHHHHHH-cCCCEEEEecCC-ChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCc
Q 035988 136 VVSPLLSLIQDQVMCLAA-LGIPAHMLTSTT-SKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRL 213 (692)
Q Consensus 136 vi~Pt~~L~~q~~~~l~~-~gi~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l 213 (692)
|++|+++|+.|+.+.+.. ++..+....|.. .... ......+|+|+||+++.. .+.....+.++
T Consensus 145 vl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~---------~~~~~~~I~v~T~G~l~r------~l~~~~~l~~~ 209 (773)
T 2xau_A 145 CTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN---------KTSNKTILKYMTDGMLLR------EAMEDHDLSRY 209 (773)
T ss_dssp EEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE---------ECCTTCSEEEEEHHHHHH------HHHHSTTCTTE
T ss_pred ecCchHHHHHHHHHHHHHHhCCchhheecceecccc---------ccCCCCCEEEECHHHHHH------HHhhCccccCC
Confidence 999999999999987754 444332212110 0000 001268999999997752 22233457899
Q ss_pred eEEEEeCccc-ccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEeccCCCCcceEEEee
Q 035988 214 SLISIDEAHC-CSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVRE 292 (692)
Q Consensus 214 ~~iVIDEaH~-l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~ 292 (692)
++|||||+|. ..+ ....+..+..+....++.++++||||++. +.+.++++....+.+.... .| +......
T Consensus 210 ~~lIlDEah~R~ld----~d~~~~~l~~l~~~~~~~~iIl~SAT~~~---~~l~~~~~~~~vi~v~gr~-~p-v~~~~~~ 280 (773)
T 2xau_A 210 SCIILDEAHERTLA----TDILMGLLKQVVKRRPDLKIIIMSATLDA---EKFQRYFNDAPLLAVPGRT-YP-VELYYTP 280 (773)
T ss_dssp EEEEECSGGGCCHH----HHHHHHHHHHHHHHCTTCEEEEEESCSCC---HHHHHHTTSCCEEECCCCC-CC-EEEECCS
T ss_pred CEEEecCccccccc----hHHHHHHHHHHHHhCCCceEEEEeccccH---HHHHHHhcCCCcccccCcc-cc-eEEEEec
Confidence 9999999996 322 11112334455666788999999999975 3455666543322222111 11 2111111
Q ss_pred cc--CcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHH-----------CCCceeEeccCCCHHHHHHHHH
Q 035988 293 KS--SVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQ-----------RGISADYYHADMDINAREKVHM 359 (692)
Q Consensus 293 ~~--~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~-----------~g~~v~~~h~~~~~~eR~~~~~ 359 (692)
.. ......+..+...+... .++++||||++++.++.+++.|.+ .++.+..+||+|++++|..+++
T Consensus 281 ~~~~~~~~~~l~~l~~~~~~~--~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~ 358 (773)
T 2xau_A 281 EFQRDYLDSAIRTVLQIHATE--EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFE 358 (773)
T ss_dssp SCCSCHHHHHHHHHHHHHHHS--CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGS
T ss_pred CCchhHHHHHHHHHHHHHHhc--CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHh
Confidence 11 11122334444444433 578999999999999999999985 5788999999999999999999
Q ss_pred HHh-----cCCCcEEEeccccccccCCCCccEEEEeCC------------------CCCHHHHHHHHhhcCCCCCCCeeE
Q 035988 360 RWS-----KNKLQVIVGTVAFGMGINKPDVRFVIHHSL------------------SKSVETYYQESGRAGRDGLPSECL 416 (692)
Q Consensus 360 ~f~-----~g~~~ILVaT~~~~~GIDip~v~~VI~~~~------------------P~s~~~y~Qr~GRagR~G~~g~~i 416 (692)
.|. +|..+|||||+++++|||+|+|++||++++ |.|.++|+||+|||||. .+|.|+
T Consensus 359 ~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~ 437 (773)
T 2xau_A 359 PAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCF 437 (773)
T ss_dssp CCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEE
T ss_pred hcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEE
Confidence 999 999999999999999999999999999888 88999999999999999 799999
Q ss_pred eecCCCCH
Q 035988 417 LFFRPADV 424 (692)
Q Consensus 417 ~l~~~~d~ 424 (692)
.||++.+.
T Consensus 438 ~l~~~~~~ 445 (773)
T 2xau_A 438 RLYTEEAF 445 (773)
T ss_dssp ESSCHHHH
T ss_pred EEecHHHh
Confidence 99987655
No 45
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=8.4e-37 Score=337.20 Aligned_cols=276 Identities=16% Similarity=0.121 Sum_probs=191.5
Q ss_pred HHHcCCCEEEEecCCChhHHHHHHHHHh----cCCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHH
Q 035988 102 AVLSGRDVLVIMAAGGGKSLCYQLPAVL----REGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKAL 177 (692)
Q Consensus 102 ~il~g~dviv~apTGsGKTl~~~lpal~----~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l 177 (692)
++++|+|++++||||||||++|++|++. .+++++|++||++|+.|+++.++.+++. ...+..
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~~~~v~--~~~~~~------------ 69 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLDVK--FHTQAF------------ 69 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSCEE--EESSCC------------
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHhcCCeE--Eecccc------------
Confidence 3567999999999999999999998875 3569999999999999999999866532 211110
Q ss_pred HhcCCCccEEEeChhhhhch---HHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEe
Q 035988 178 EKGEGELKMLYVTPEKISKS---KRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALT 254 (692)
Q Consensus 178 ~~~~~~~~Ili~Tpe~l~~~---~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lS 254 (692)
. .++||+++... ..+...+.....+.+++++||||||++ +.+ |...+..+..+.. .++.++++||
T Consensus 70 -------~-~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~--~~~~~~~~~~~~~-~~~~~~l~~S 137 (440)
T 1yks_A 70 -------S-AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPA--SIAARGWAAHRAR-ANESATILMT 137 (440)
T ss_dssp -------C-CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHH--HHHHHHHHHHHHH-TTSCEEEEEC
T ss_pred -------e-eccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-Ccc--hHHHHHHHHHHhc-cCCceEEEEe
Confidence 0 37888776531 222223333344688999999999998 222 3333333222222 3578899999
Q ss_pred cccchhhHHHHHHHhcccceEEEeccCCCCcceEEEeeccCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHH
Q 035988 255 ATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQE 334 (692)
Q Consensus 255 AT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~ 334 (692)
||+++.+.... ....++.. ........... .+...+.+ .++++||||++++.++.+++.
T Consensus 138 AT~~~~~~~~~----~~~~~~~~----------~~~~~~~~~~~----~~~~~l~~---~~~~~lVF~~s~~~a~~l~~~ 196 (440)
T 1yks_A 138 ATPPGTSDEFP----HSNGEIED----------VQTDIPSEPWN----TGHDWILA---DKRPTAWFLPSIRAANVMAAS 196 (440)
T ss_dssp SSCTTCCCSSC----CCSSCEEE----------EECCCCSSCCS----SSCHHHHH---CCSCEEEECSCHHHHHHHHHH
T ss_pred CCCCchhhhhh----hcCCCeeE----------eeeccChHHHH----HHHHHHHh---cCCCEEEEeCCHHHHHHHHHH
Confidence 99987643211 11111100 00000001111 12233333 468999999999999999999
Q ss_pred HHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEE-------------------eCCCCC
Q 035988 335 LRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIH-------------------HSLSKS 395 (692)
Q Consensus 335 L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~-------------------~~~P~s 395 (692)
|+..++++..+|| ++|..+++.|++|+++|||||+++++|||+| +++||+ ++.|.+
T Consensus 197 L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~ 271 (440)
T 1yks_A 197 LRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRIS 271 (440)
T ss_dssp HHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECC
T ss_pred HHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccC
Confidence 9999999999999 4688999999999999999999999999999 999997 899999
Q ss_pred HHHHHHHHhhcCCC-CCCCeeEeec---CCCCHHHHHH
Q 035988 396 VETYYQESGRAGRD-GLPSECLLFF---RPADVPRQSS 429 (692)
Q Consensus 396 ~~~y~Qr~GRagR~-G~~g~~i~l~---~~~d~~~~~~ 429 (692)
.++|+||+||+||. |.+|.|++|+ ++.|...+..
T Consensus 272 ~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~ 309 (440)
T 1yks_A 272 ASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCW 309 (440)
T ss_dssp HHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHH
T ss_pred HHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhh
Confidence 99999999999997 6899999997 5555544433
No 46
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=1.2e-36 Score=347.85 Aligned_cols=292 Identities=15% Similarity=0.109 Sum_probs=212.1
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHh----cCCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecC
Q 035988 89 IPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVL----REGIALVVSPLLSLIQDQVMCLAALGIPAHMLTST 164 (692)
Q Consensus 89 ~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~----~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~ 164 (692)
...++|+|+.+++.+++|+|+++.||||||||++|++|++. .+.++||++||++|+.|+.+.++.. .+.. .+.
T Consensus 169 ~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~~~--~v~~-~~~ 245 (618)
T 2whx_A 169 ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALRGL--PIRY-QTP 245 (618)
T ss_dssp CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTS--CEEE-CCT
T ss_pred cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhcCC--ceeE-ecc
Confidence 46788998888999999999999999999999999999874 3569999999999999999988744 3332 211
Q ss_pred CChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHHHHhh
Q 035988 165 TSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQ 244 (692)
Q Consensus 165 ~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~ 244 (692)
... ....+...+.++|.+.+. ..+.....+.++++|||||||++ +.+ |...+..+.....
T Consensus 246 ~l~----------~~~tp~~~i~~~t~~~l~------~~l~~~~~l~~~~~iViDEah~~-~~~--~~~~~~~i~~~l~- 305 (618)
T 2whx_A 246 AVK----------SDHTGREIVDLMCHATFT------TRLLSSTRVPNYNLIVMDEAHFT-DPC--SVAARGYISTRVE- 305 (618)
T ss_dssp TSS----------CCCCSSSCEEEEEHHHHH------HHHHHCSSCCCCSEEEEESTTCC-SHH--HHHHHHHHHHHHH-
T ss_pred cce----------eccCCCceEEEEChHHHH------HHHhccccccCCeEEEEECCCCC-Ccc--HHHHHHHHHHHhc-
Confidence 100 011124455566666443 22333345789999999999997 333 5555554332221
Q ss_pred CCCCCEEEEecccchhhHHHHHHHhcccceEEEeccCCCCcceEEEeeccCcchHHHHHHHHHHHHhCCCCCceEEEEec
Q 035988 245 FPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFS 324 (692)
Q Consensus 245 ~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s 324 (692)
.++.++++||||++..+.. +.. .+...+......+ ... +..+..++.+ .++++||||+|
T Consensus 306 ~~~~q~il~SAT~~~~~~~----~~~-~~~~~~~v~~~~~---------~~~----~~~ll~~l~~---~~~~~LVF~~s 364 (618)
T 2whx_A 306 MGEAAAIFMTATPPGSTDP----FPQ-SNSPIEDIEREIP---------ERS----WNTGFDWITD---YQGKTVWFVPS 364 (618)
T ss_dssp HTSCEEEEECSSCTTCCCS----SCC-CSSCEEEEECCCC---------SSC----CSSSCHHHHH---CCSCEEEECSS
T ss_pred ccCccEEEEECCCchhhhh----hhc-cCCceeeecccCC---------HHH----HHHHHHHHHh---CCCCEEEEECC
Confidence 2678999999999876432 111 1111111000000 000 1122333333 46799999999
Q ss_pred cchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEE-----------------
Q 035988 325 RKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFV----------------- 387 (692)
Q Consensus 325 ~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~V----------------- 387 (692)
++.|+.+++.|+..++.+..+||+ +|..+++.|++|+.+|||||+++++|||+| +++|
T Consensus 365 ~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~ 439 (618)
T 2whx_A 365 IKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPE 439 (618)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSC
T ss_pred hhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCC
Confidence 999999999999999999999985 788899999999999999999999999997 8888
Q ss_pred ---EEeCCCCCHHHHHHHHhhcCCCCC-CCeeEeecC---CCCHHHHHH
Q 035988 388 ---IHHSLSKSVETYYQESGRAGRDGL-PSECLLFFR---PADVPRQSS 429 (692)
Q Consensus 388 ---I~~~~P~s~~~y~Qr~GRagR~G~-~g~~i~l~~---~~d~~~~~~ 429 (692)
|+++.|.|.++|+||+||+||.|. +|.|++|++ +.|...+..
T Consensus 440 ~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~ 488 (618)
T 2whx_A 440 RVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHW 488 (618)
T ss_dssp EEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHH
T ss_pred ceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHH
Confidence 778889999999999999999975 899999998 666544433
No 47
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=3.4e-37 Score=354.57 Aligned_cols=287 Identities=14% Similarity=0.083 Sum_probs=204.3
Q ss_pred CCCHHHH-----HHHHHHH------cCCCEEEEecCCChhHHHHHHHHHhc----CCeEEEEcccHHHHHHHHHHHHHcC
Q 035988 91 AYRANQQ-----EIINAVL------SGRDVLVIMAAGGGKSLCYQLPAVLR----EGIALVVSPLLSLIQDQVMCLAALG 155 (692)
Q Consensus 91 ~~r~~Q~-----~ai~~il------~g~dviv~apTGsGKTl~~~lpal~~----~~~~lvi~Pt~~L~~q~~~~l~~~g 155 (692)
.|+|+|. ++|+.++ .++|++++||||||||++|++|++.. +.++||++||++|+.|+++.++.++
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~~~~ 294 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRGLP 294 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSC
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhcCC
Confidence 8899999 9999988 89999999999999999999988743 5799999999999999999998776
Q ss_pred CCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhc---hHHHHHHHHhhhhcCCceEEEEeCcccccccCCCch
Q 035988 156 IPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISK---SKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFR 232 (692)
Q Consensus 156 i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~---~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr 232 (692)
+. ...+.. -.++||+++.. ...+...+.....+.++++|||||||++. ..+.
T Consensus 295 i~--~~~~~l--------------------~~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~---~~~~ 349 (673)
T 2wv9_A 295 VR--YLTPAV--------------------QREHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTD---PASI 349 (673)
T ss_dssp CE--ECCC-----------------------CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCC---HHHH
T ss_pred ee--eecccc--------------------cccCCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCcccC---ccHH
Confidence 43 111100 01566665532 11222222333456889999999999971 1122
Q ss_pred HHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEeccCCCCcceEEEeeccCcchHHHHHHHHHHHHhC
Q 035988 233 PDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESY 312 (692)
Q Consensus 233 ~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~l~~~l~~~~ 312 (692)
.....+..+.. .++.++++||||+++.+... .....++. .+......... ..+...+.+
T Consensus 350 ~~~~~l~~~~~-~~~~~vl~~SAT~~~~i~~~----~~~~~~i~----------~v~~~~~~~~~----~~~l~~l~~-- 408 (673)
T 2wv9_A 350 AARGYIATRVE-AGEAAAIFMTATPPGTSDPF----PDTNSPVH----------DVSSEIPDRAW----SSGFEWITD-- 408 (673)
T ss_dssp HHHHHHHHHHH-TTSCEEEEECSSCTTCCCSS----CCCSSCEE----------EEECCCCSSCC----SSCCHHHHS--
T ss_pred HHHHHHHHhcc-ccCCcEEEEcCCCChhhhhh----cccCCceE----------EEeeecCHHHH----HHHHHHHHh--
Confidence 22222222221 25789999999998753211 00011111 00000000111 112233332
Q ss_pred CCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEE---
Q 035988 313 PNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIH--- 389 (692)
Q Consensus 313 ~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~--- 389 (692)
.++++||||++++.++.+++.|+..++.+..+||+ +|..+++.|++|+++|||||+++++|||+| +++|||
T Consensus 409 -~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~ 482 (673)
T 2wv9_A 409 -YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRK 482 (673)
T ss_dssp -CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCE
T ss_pred -CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCC
Confidence 57899999999999999999999999999999994 799999999999999999999999999999 999998
Q ss_pred -----------------eCCCCCHHHHHHHHhhcCCC-CCCCeeEeec---CCCCHHHHHH
Q 035988 390 -----------------HSLSKSVETYYQESGRAGRD-GLPSECLLFF---RPADVPRQSS 429 (692)
Q Consensus 390 -----------------~~~P~s~~~y~Qr~GRagR~-G~~g~~i~l~---~~~d~~~~~~ 429 (692)
|++|.|.++|+||+||+||. |+.|.|++|+ ++.|...+..
T Consensus 483 ~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ 543 (673)
T 2wv9_A 483 SVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHW 543 (673)
T ss_dssp ECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHH
T ss_pred cccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHH
Confidence 67999999999999999999 7899999997 4555444333
No 48
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=7.6e-35 Score=334.31 Aligned_cols=307 Identities=16% Similarity=0.189 Sum_probs=199.1
Q ss_pred CCCHHHHHHHHHHHc----C-CCEEEEecCCChhHHHHHHHHHh------------cCCeEEEEcccHHHHHHHH-HHHH
Q 035988 91 AYRANQQEIINAVLS----G-RDVLVIMAAGGGKSLCYQLPAVL------------REGIALVVSPLLSLIQDQV-MCLA 152 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~----g-~dviv~apTGsGKTl~~~lpal~------------~~~~~lvi~Pt~~L~~q~~-~~l~ 152 (692)
.+||+|.++++.++. + +++++++|||+|||++++..+.. ..+++|||+|+++|+.|+. +.++
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 699999999999886 4 56899999999999997544321 3479999999999999999 8889
Q ss_pred HcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCch
Q 035988 153 ALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFR 232 (692)
Q Consensus 153 ~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr 232 (692)
.++.....+.+... ....+|+|+||++|...... ...........+++|||||||++...+.
T Consensus 258 ~~~~~~~~~~~~~~--------------~~~~~I~v~T~~~l~~~~~~-~~~~~~~~~~~~~lvIiDEaH~~~~~~~--- 319 (590)
T 3h1t_A 258 PFGDARHKIEGGKV--------------VKSREIYFAIYQSIASDERR-PGLYKEFPQDFFDLIIIDECHRGSARDN--- 319 (590)
T ss_dssp TTCSSEEECCC--C--------------CSSCSEEEEEGGGC-------CCGGGGSCTTSCSEEEESCCC----------
T ss_pred hcchhhhhhhccCC--------------CCCCcEEEEEhhhhcccccc-ccccccCCCCccCEEEEECCccccccch---
Confidence 88877766654322 12789999999998642110 0001223346789999999999875421
Q ss_pred HHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEE-----eccCCCCcceEEEeecc-------------
Q 035988 233 PDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKF-----VSTINRPNLFYMVREKS------------- 294 (692)
Q Consensus 233 ~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~-----~~~~~r~~l~~~v~~~~------------- 294 (692)
. .+..+...+++.++++||||+..........+++......- ...+..|...+.+....
T Consensus 320 ~---~~~~il~~~~~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (590)
T 3h1t_A 320 S---NWREILEYFEPAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVD 396 (590)
T ss_dssp -----CHHHHHHSTTSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------
T ss_pred H---HHHHHHHhCCcceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccc
Confidence 1 22345566777889999999987655555555553211100 00111111111111000
Q ss_pred -------------C----------cchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCC--------cee
Q 035988 295 -------------S----------VGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGI--------SAD 343 (692)
Q Consensus 295 -------------~----------~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~--------~v~ 343 (692)
. ......+.+.+++... ..++++||||+++++|+.+++.|.+.+. .+.
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~-~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~ 475 (590)
T 3h1t_A 397 RFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRT-DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVA 475 (590)
T ss_dssp ------------CCSHHHHHHHHHTHHHHHHHHHHHHHHH-CTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEE
T ss_pred ccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhc-CCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEE
Confidence 0 0011223344445544 3678999999999999999999987643 267
Q ss_pred EeccCCCHHHHHHHHHHHhcCCCc---EEEeccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCC--CCeeEee
Q 035988 344 YYHADMDINAREKVHMRWSKNKLQ---VIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGL--PSECLLF 418 (692)
Q Consensus 344 ~~h~~~~~~eR~~~~~~f~~g~~~---ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~--~g~~i~l 418 (692)
.+||+++ ++|..++++|++|+.+ |||||+++++|||+|++++||+++.|.|+..|+|++||+||.|. ....+++
T Consensus 476 ~i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I 554 (590)
T 3h1t_A 476 RVTSEEG-KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNI 554 (590)
T ss_dssp ECSSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEE
T ss_pred EEeCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEE
Confidence 8899876 4799999999998866 88999999999999999999999999999999999999999875 3333444
Q ss_pred cC
Q 035988 419 FR 420 (692)
Q Consensus 419 ~~ 420 (692)
+.
T Consensus 555 ~D 556 (590)
T 3h1t_A 555 ID 556 (590)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 49
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=2.9e-36 Score=341.94 Aligned_cols=280 Identities=19% Similarity=0.176 Sum_probs=207.7
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHH-cCCCEEEEecCCChhH
Q 035988 91 AYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMCLAA-LGIPAHMLTSTTSKED 169 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~~~~~lvi~Pt~~L~~q~~~~l~~-~gi~~~~~~~~~~~~~ 169 (692)
.++++|.++++.+..+++++++||||||||++|.+|++..+.++||++||++|+.|+.+.+.+ ++..+....++...
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~~~-- 294 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRTI-- 294 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCEE--
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHCCCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcEec--
Confidence 356677777777778899999999999999999999998888999999999999999988865 57777777766431
Q ss_pred HHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCC
Q 035988 170 EKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVP 249 (692)
Q Consensus 170 ~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~ 249 (692)
....+|+|+||++|.. .....+.++++|||||||++. .+ |...+..+.......+...
T Consensus 295 -----------~~~~~IlV~TPGrLl~--------~~~l~l~~l~~lVlDEAH~l~-~~--~~~~l~~Il~~l~~~~~~l 352 (666)
T 3o8b_A 295 -----------TTGAPVTYSTYGKFLA--------DGGCSGGAYDIIICDECHSTD-ST--TILGIGTVLDQAETAGARL 352 (666)
T ss_dssp -----------CCCCSEEEEEHHHHHH--------TTSCCTTSCSEEEETTTTCCS-HH--HHHHHHHHHHHTTTTTCSE
T ss_pred -----------cCCCCEEEECcHHHHh--------CCCcccCcccEEEEccchhcC-cc--HHHHHHHHHHhhhhcCCce
Confidence 2278999999997631 233456679999999998864 23 6665555333332222333
Q ss_pred EEEEecccchhhHHHHHHHhcccceEEEeccCCCCcceEEEeeccCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHH
Q 035988 250 MMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECE 329 (692)
Q Consensus 250 ~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e 329 (692)
++++|||++..+. ...+....+...+... +. .. ..... +. . ..++++||||+|++.++
T Consensus 353 lil~SAT~~~~i~------~~~p~i~~v~~~~~~~-i~--~~---~~~~~--------l~-~-~~~~~vLVFv~Tr~~ae 410 (666)
T 3o8b_A 353 VVLATATPPGSVT------VPHPNIEEVALSNTGE-IP--FY---GKAIP--------IE-A-IRGGRHLIFCHSKKKCD 410 (666)
T ss_dssp EEEEESSCTTCCC------CCCTTEEEEECBSCSS-EE--ET---TEEEC--------GG-G-SSSSEEEEECSCHHHHH
T ss_pred EEEECCCCCcccc------cCCcceEEEeecccch-hH--HH---Hhhhh--------hh-h-ccCCcEEEEeCCHHHHH
Confidence 6788999987321 0011111111111111 00 00 00000 11 1 16789999999999999
Q ss_pred HHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEE----------EeC--------
Q 035988 330 QVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVI----------HHS-------- 391 (692)
Q Consensus 330 ~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI----------~~~-------- 391 (692)
.+++.|++.|+.+..+||+|++++ |.++..+|||||+++++|||+| +++|| |||
T Consensus 411 ~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~ 482 (666)
T 3o8b_A 411 ELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIE 482 (666)
T ss_dssp HHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEE
T ss_pred HHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccc
Confidence 999999999999999999999875 4566679999999999999997 99988 566
Q ss_pred ---CCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHHH
Q 035988 392 ---LSKSVETYYQESGRAGRDGLPSECLLFFRPADVPR 426 (692)
Q Consensus 392 ---~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~ 426 (692)
.|.|.++|+||+||+|| |.+|. +.||++.|...
T Consensus 483 ~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 483 TTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp EEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCS
T ss_pred cccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhc
Confidence 89999999999999999 99999 99999887654
No 50
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=5.5e-36 Score=332.60 Aligned_cols=269 Identities=16% Similarity=0.162 Sum_probs=191.6
Q ss_pred HHHHHcCCCEEEEecCCChhHHHHHHHHHh----cCCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHH
Q 035988 100 INAVLSGRDVLVIMAAGGGKSLCYQLPAVL----REGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYK 175 (692)
Q Consensus 100 i~~il~g~dviv~apTGsGKTl~~~lpal~----~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~ 175 (692)
...+.++++++++||||||||++|++|++. .++++||++||++|+.|+.+.++.+ .+....+.....
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~--~v~~~~~~~~~~------- 85 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALRGL--PVRYQTSAVQRE------- 85 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTTTS--CEEECC-------------
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhcCc--eEeEEecccccC-------
Confidence 344556899999999999999999999875 4679999999999999999999843 333322211110
Q ss_pred HHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccc-----cccCCCchHHHHHHHHHHhhCCCCCE
Q 035988 176 ALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCC-----SQWGHDFRPDYKNLGILKTQFPDVPM 250 (692)
Q Consensus 176 ~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l-----~~~g~~fr~~~~~l~~l~~~~~~~~~ 250 (692)
..+...+.++|.+.+. ..+.....+.++++|||||||++ ..+| |.. .....++.++
T Consensus 86 ----~t~~~~i~~~~~~~l~------~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~--~~~-------~~~~~~~~~~ 146 (459)
T 2z83_A 86 ----HQGNEIVDVMCHATLT------HRLMSPNRVPNYNLFVMDEAHFTDPASIAARG--YIA-------TKVELGEAAA 146 (459)
T ss_dssp ------CCCSEEEEEHHHHH------HHHHSCC-CCCCSEEEESSTTCCSHHHHHHHH--HHH-------HHHHTTSCEE
T ss_pred ----CCCCcEEEEEchHHHH------HHhhccccccCCcEEEEECCccCCchhhHHHH--HHH-------HHhccCCccE
Confidence 1124556677777543 22333345778999999999983 3333 211 1223468899
Q ss_pred EEEecccchhhHHHHHHHhcccceEEEeccCCCCcceEEEeeccCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHH
Q 035988 251 MALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQ 330 (692)
Q Consensus 251 i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~ 330 (692)
++||||++..+... .....++..... ...... ...+..++.. .++++||||+|++.++.
T Consensus 147 il~SAT~~~~~~~~----~~~~~pi~~~~~-----------~~~~~~---~~~~~~~l~~---~~~~~LVF~~s~~~~~~ 205 (459)
T 2z83_A 147 IFMTATPPGTTDPF----PDSNAPIHDLQD-----------EIPDRA---WSSGYEWITE---YAGKTVWFVASVKMGNE 205 (459)
T ss_dssp EEECSSCTTCCCSS----CCCSSCEEEEEC-----------CCCSSC---CSSCCHHHHH---CCSCEEEECSCHHHHHH
T ss_pred EEEEcCCCcchhhh----ccCCCCeEEecc-----------cCCcch---hHHHHHHHHh---cCCCEEEEeCChHHHHH
Confidence 99999998653211 111111111100 000000 0111233433 46799999999999999
Q ss_pred HHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEE--------------------e
Q 035988 331 VAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIH--------------------H 390 (692)
Q Consensus 331 l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~--------------------~ 390 (692)
+++.|+..|+.+..+||. +|..+++.|++|+.+|||||+++++|||+|+ ++||+ |
T Consensus 206 l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~ 280 (459)
T 2z83_A 206 IAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGN 280 (459)
T ss_dssp HHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECS
T ss_pred HHHHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCccccccccccccccccccc
Confidence 999999999999999995 7888999999999999999999999999999 99999 7
Q ss_pred CCCCCHHHHHHHHhhcCCCCC-CCeeEeecCCC
Q 035988 391 SLSKSVETYYQESGRAGRDGL-PSECLLFFRPA 422 (692)
Q Consensus 391 ~~P~s~~~y~Qr~GRagR~G~-~g~~i~l~~~~ 422 (692)
+.|.|..+|+||+|||||.|. +|.|++|+++.
T Consensus 281 d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 281 PSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp CEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred CCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 799999999999999999997 89999999876
No 51
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=7.4e-34 Score=325.87 Aligned_cols=294 Identities=16% Similarity=0.176 Sum_probs=215.1
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHH
Q 035988 94 ANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFI 173 (692)
Q Consensus 94 ~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~ 173 (692)
|.|.......+.+++++++||||||||+ ..+..+...+.++|++||++|+.|+++.+++.|+++..++|+.....
T Consensus 143 p~~~~p~ar~l~rk~vlv~apTGSGKT~-~al~~l~~~~~gl~l~PtR~LA~Qi~~~l~~~g~~v~lltG~~~~iv---- 217 (677)
T 3rc3_A 143 PPNWYPDARAMQRKIIFHSGPTNSGKTY-HAIQKYFSAKSGVYCGPLKLLAHEIFEKSNAAGVPCDLVTGEERVTV---- 217 (677)
T ss_dssp GGGGCHHHHTSCCEEEEEECCTTSSHHH-HHHHHHHHSSSEEEEESSHHHHHHHHHHHHHTTCCEEEECSSCEECC----
T ss_pred hhhhCHHHHhcCCCEEEEEcCCCCCHHH-HHHHHHHhcCCeEEEeCHHHHHHHHHHHHHhcCCcEEEEECCeeEEe----
Confidence 3444444556789999999999999999 44555656677799999999999999999999999999998765410
Q ss_pred HHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHHHHhhC-CCCCEEE
Q 035988 174 YKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQF-PDVPMMA 252 (692)
Q Consensus 174 ~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~-~~~~~i~ 252 (692)
.......+++++|++.+.. ...++++||||||++.+.+ |...+.. .+.... ++.++++
T Consensus 218 ----~TpGr~~~il~~T~e~~~l-------------~~~v~lvVIDEaH~l~d~~--~g~~~~~--~l~~l~~~~i~il~ 276 (677)
T 3rc3_A 218 ----QPNGKQASHVSCTVEMCSV-------------TTPYEVAVIDEIQMIRDPA--RGWAWTR--ALLGLCAEEVHLCG 276 (677)
T ss_dssp ----STTCCCCSEEEEEGGGCCS-------------SSCEEEEEECSGGGGGCTT--THHHHHH--HHHHCCEEEEEEEE
T ss_pred ----cCCCcccceeEecHhHhhh-------------cccCCEEEEecceecCCcc--chHHHHH--HHHccCccceEEEe
Confidence 0000137899999986641 2578999999999998765 6666554 344444 4677889
Q ss_pred EecccchhhHHHHHHHhcccceEEEeccCCCCcceEEEeeccCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHH
Q 035988 253 LTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVA 332 (692)
Q Consensus 253 lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~ 332 (692)
+|||.+ ....+....+.... + ..+.+.... ....... ..+. . .....||||+|++.++.++
T Consensus 277 ~SAT~~--~i~~l~~~~~~~~~--v-~~~~r~~~l-~~~~~~l----------~~l~-~--~~~g~iIf~~s~~~ie~la 337 (677)
T 3rc3_A 277 EPAAID--LVMELMYTTGEEVE--V-RDYKRLTPI-SVLDHAL----------ESLD-N--LRPGDCIVCFSKNDIYSVS 337 (677)
T ss_dssp CGGGHH--HHHHHHHHHTCCEE--E-EECCCSSCE-EECSSCC----------CSGG-G--CCTTEEEECSSHHHHHHHH
T ss_pred ccchHH--HHHHHHHhcCCceE--E-EEeeecchH-HHHHHHH----------HHHH-h--cCCCCEEEEcCHHHHHHHH
Confidence 999842 23334333332211 1 122222111 1111100 0111 1 2345699999999999999
Q ss_pred HHHHHCCCceeEeccCCCHHHHHHHHHHHhc--CCCcEEEeccccccccCCCCccEEEEeCC--------------CCCH
Q 035988 333 QELRQRGISADYYHADMDINAREKVHMRWSK--NKLQVIVGTVAFGMGINKPDVRFVIHHSL--------------SKSV 396 (692)
Q Consensus 333 ~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~--g~~~ILVaT~~~~~GIDip~v~~VI~~~~--------------P~s~ 396 (692)
+.|.+.++.+..+||+|++++|..+++.|++ |.++|||||+++++|||+ ++++||++++ |.|.
T Consensus 338 ~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~ 416 (677)
T 3rc3_A 338 RQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITT 416 (677)
T ss_dssp HHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCH
T ss_pred HHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCH
Confidence 9999999999999999999999999999999 889999999999999999 8999999999 7799
Q ss_pred HHHHHHHhhcCCCCCC---CeeEeecCCCCHHHHHHHHhhh
Q 035988 397 ETYYQESGRAGRDGLP---SECLLFFRPADVPRQSSMVFYE 434 (692)
Q Consensus 397 ~~y~Qr~GRagR~G~~---g~~i~l~~~~d~~~~~~l~~~~ 434 (692)
.+|+||+|||||.|.. |.|++++. .+...+..++...
T Consensus 417 ~~~~QR~GRAGR~g~~g~~G~v~~l~~-~d~~~~~~~~~~~ 456 (677)
T 3rc3_A 417 SQALQIAGRAGRFSSRFKEGEVTTMNH-EDLSLLKEILKRP 456 (677)
T ss_dssp HHHHHHHTTBTCTTSSCSSEEEEESST-THHHHHHHHHHSC
T ss_pred HHHHHHhcCCCCCCCCCCCEEEEEEec-chHHHHHHHHhcC
Confidence 9999999999999965 67776654 4555666665543
No 52
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=1.5e-34 Score=318.45 Aligned_cols=266 Identities=15% Similarity=0.151 Sum_probs=187.5
Q ss_pred cCCCEEEEecCCChhHHHHHHHHH----hcCCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhc
Q 035988 105 SGRDVLVIMAAGGGKSLCYQLPAV----LREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKG 180 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~~lpal----~~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~ 180 (692)
.|++++++||||||||++|++|++ ..+.+++|++||++|+.|+.+.+. |+.+....+.... ..
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~--~~~v~~~~~~~~~---------~~-- 67 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALR--GEPIRYMTPAVQS---------ER-- 67 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT--TSCEEEC-------------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhC--CCeEEEEecCccc---------cC--
Confidence 378999999999999999988887 346799999999999999998887 5566655443221 11
Q ss_pred CCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchh
Q 035988 181 EGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQK 260 (692)
Q Consensus 181 ~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~ 260 (692)
.+...+.++|.+.+.. .+.....+.++++|||||||++..+ +......+..+. ..++.++++||||+++.
T Consensus 68 ~~~~~~~~~~~~~l~~------~l~~~~~~~~l~~vViDEaH~~~~~---~~~~~~~l~~~~-~~~~~~~l~~SAT~~~~ 137 (431)
T 2v6i_A 68 TGNEIVDFMCHSTFTM------KLLQGVRVPNYNLYIMDEAHFLDPA---SVAARGYIETRV-SMGDAGAIFMTATPPGT 137 (431)
T ss_dssp -CCCSEEEEEHHHHHH------HHHHTCCCCCCSEEEEESTTCCSHH---HHHHHHHHHHHH-HTTSCEEEEEESSCTTC
T ss_pred CCCceEEEEchHHHHH------HHhcCccccCCCEEEEeCCccCCcc---HHHHHHHHHHHh-hCCCCcEEEEeCCCCcc
Confidence 1145566777776532 2222345788999999999996321 223333322222 24678999999999974
Q ss_pred hHHHHHHHhcccceEEEeccCCCCcceEE-EeeccCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCC
Q 035988 261 VQNDLMEMLHIRKCIKFVSTINRPNLFYM-VREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRG 339 (692)
Q Consensus 261 ~~~~i~~~l~~~~~~~~~~~~~r~~l~~~-v~~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g 339 (692)
+.. +.. .++.+... ....... ...+..++.+ .++++||||++++.++.+++.|++.+
T Consensus 138 ~~~-------~~~--------~~~~i~~~~~~~~~~~----~~~~~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~~ 195 (431)
T 2v6i_A 138 TEA-------FPP--------SNSPIIDEETRIPDKA----WNSGYEWITE---FDGRTVWFVHSIKQGAEIGTCLQKAG 195 (431)
T ss_dssp CCS-------SCC--------CSSCCEEEECCCCSSC----CSSCCHHHHS---CSSCEEEECSSHHHHHHHHHHHHHTT
T ss_pred hhh-------hcC--------CCCceeeccccCCHHH----HHHHHHHHHc---CCCCEEEEeCCHHHHHHHHHHHHHcC
Confidence 221 110 01111110 0000111 1223344443 36789999999999999999999999
Q ss_pred CceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccE-----------------EEEeCCCCCHHHHHHH
Q 035988 340 ISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRF-----------------VIHHSLSKSVETYYQE 402 (692)
Q Consensus 340 ~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~-----------------VI~~~~P~s~~~y~Qr 402 (692)
+.+..+||+ +|..+++.|++|+++|||||+++++|||+| +.+ ||+++.|.+..+|+||
T Consensus 196 ~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr 270 (431)
T 2v6i_A 196 KKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQR 270 (431)
T ss_dssp CCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHH
T ss_pred CeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHh
Confidence 999999997 588899999999999999999999999999 544 6889999999999999
Q ss_pred HhhcCCCCCCCeeEeecC
Q 035988 403 SGRAGRDGLPSECLLFFR 420 (692)
Q Consensus 403 ~GRagR~G~~g~~i~l~~ 420 (692)
+||+||.|..+.|+++|.
T Consensus 271 ~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 271 RGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp HTTSSCCTTCCCCEEEEC
T ss_pred hhccCCCCCCCCeEEEEc
Confidence 999999997655555554
No 53
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=4.8e-33 Score=334.07 Aligned_cols=316 Identities=17% Similarity=0.183 Sum_probs=224.3
Q ss_pred CCCHHHHHHHHHHHcC--CCEEEEecCCChhHHHHHHHHHh---cC--CeEEEEcccHHHHHHHHHHH-HHcCCCEEEEe
Q 035988 91 AYRANQQEIINAVLSG--RDVLVIMAAGGGKSLCYQLPAVL---RE--GIALVVSPLLSLIQDQVMCL-AALGIPAHMLT 162 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~g--~dviv~apTGsGKTl~~~lpal~---~~--~~~lvi~Pt~~L~~q~~~~l-~~~gi~~~~~~ 162 (692)
.++|+|.+++..++.. ..+|+.++||+|||++++..+.. .+ +++|||+|+ +|+.||...+ +.+++++..+.
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l~v~v~~ 231 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFNLRFALFD 231 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSCCCCEECC
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhCCCEEEEc
Confidence 7899999999998874 47899999999999988765532 23 489999999 9999999999 56788887765
Q ss_pred cCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHHHH
Q 035988 163 STTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILK 242 (692)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~ 242 (692)
+..... ............+|+|+|++.+.........+ ...++++|||||||++..++......+..+..+.
T Consensus 232 ~~~~~~----~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l----~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~ 303 (968)
T 3dmq_A 232 DERYAE----AQHDAYNPFDTEQLVICSLDFARRSKQRLEHL----CEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLA 303 (968)
T ss_dssp HHHHHH----HHHTTCSSSTTCSEEEECHHHHHTSTTTTHHH----HTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHH
T ss_pred cchhhh----hhhhcccccccCCEEEEcHHHHhhCHHHHHHh----hhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHh
Confidence 432111 11110111235799999999885432222222 2357999999999999766654444455555554
Q ss_pred hhCCCCCEEEEecccchhhHHHHHHHhcc---c-----------------------------------------------
Q 035988 243 TQFPDVPMMALTATATQKVQNDLMEMLHI---R----------------------------------------------- 272 (692)
Q Consensus 243 ~~~~~~~~i~lSAT~~~~~~~~i~~~l~~---~----------------------------------------------- 272 (692)
.. ...+++|||||.+....++...+.+ .
T Consensus 304 ~~--~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~ 381 (968)
T 3dmq_A 304 EH--VPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQD 381 (968)
T ss_dssp TT--CSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTC
T ss_pred hc--CCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchh
Confidence 32 3358999999954111111000000 0
Q ss_pred --------------------------------ceEEEec------cCCCCcc-eEEEee---------------------
Q 035988 273 --------------------------------KCIKFVS------TINRPNL-FYMVRE--------------------- 292 (692)
Q Consensus 273 --------------------------------~~~~~~~------~~~r~~l-~~~v~~--------------------- 292 (692)
....+.. .+..... .+.+..
T Consensus 382 ~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 461 (968)
T 3dmq_A 382 IEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAE 461 (968)
T ss_dssp SSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGG
T ss_pred hHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhH
Confidence 0000000 0000000 000000
Q ss_pred ---------------------ccCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHH-CCCceeEeccCCC
Q 035988 293 ---------------------KSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQ-RGISADYYHADMD 350 (692)
Q Consensus 293 ---------------------~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~-~g~~v~~~h~~~~ 350 (692)
.......+...+.+++... .+.++||||+++..++.++..|.. .|+++..+||+|+
T Consensus 462 ~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~--~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~ 539 (968)
T 3dmq_A 462 DRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSH--RSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMS 539 (968)
T ss_dssp GGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHT--SSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSC
T ss_pred HHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhC--CCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 0111223567777888764 789999999999999999999995 5999999999999
Q ss_pred HHHHHHHHHHHhcCC--CcEEEeccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeec
Q 035988 351 INAREKVHMRWSKNK--LQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFF 419 (692)
Q Consensus 351 ~~eR~~~~~~f~~g~--~~ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~ 419 (692)
..+|..+++.|++|+ ++|||||+++++|+|+|++++||++++|+++..|+|++||+||.|+.+.|++++
T Consensus 540 ~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~ 610 (968)
T 3dmq_A 540 IIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHV 610 (968)
T ss_dssp TTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEE
T ss_pred HHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEE
Confidence 999999999999998 999999999999999999999999999999999999999999999998776664
No 54
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=5.8e-31 Score=293.73 Aligned_cols=326 Identities=20% Similarity=0.219 Sum_probs=238.2
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc---CCeEEEEcccHHHHHHHHHHHHH--
Q 035988 79 ADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR---EGIALVVSPLLSLIQDQVMCLAA-- 153 (692)
Q Consensus 79 ~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~---~~~~lvi~Pt~~L~~q~~~~l~~-- 153 (692)
+.++.++.+|+ .+++.|.-..-.+..|+ |+.|.||+|||+++.+|+++. +..+.||+|+..||.+-.+++..
T Consensus 64 vREAa~R~lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~G~~vhVvT~ndyLA~rdae~m~~l~ 140 (822)
T 3jux_A 64 VREAARRTLGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALIGKGVHLVTVNDYLARRDALWMGPVY 140 (822)
T ss_dssp HHHHHHHHTSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhcCCceEEEeccHHHHHhHHHHHHHHH
Confidence 34555666787 57788887776776676 999999999999999999854 67899999999999998877765
Q ss_pred --cCCCEEEEec--------------------------------------------------CCChhHHHHHHHHHHhcC
Q 035988 154 --LGIPAHMLTS--------------------------------------------------TTSKEDEKFIYKALEKGE 181 (692)
Q Consensus 154 --~gi~~~~~~~--------------------------------------------------~~~~~~~~~~~~~l~~~~ 181 (692)
+|+++.++.+ +.+..++...+
T Consensus 141 ~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY------- 213 (822)
T 3jux_A 141 LFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAY------- 213 (822)
T ss_dssp HHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHH-------
T ss_pred HHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHh-------
Confidence 4999999887 23334444433
Q ss_pred CCccEEEeChhhhhchHHHHHHHH---hhhhcCCceEEEEeCcccccc-----------c--------------------
Q 035988 182 GELKMLYVTPEKISKSKRFMSKLE---KCHHAGRLSLISIDEAHCCSQ-----------W-------------------- 227 (692)
Q Consensus 182 ~~~~Ili~Tpe~l~~~~~~~~~l~---~~~~~~~l~~iVIDEaH~l~~-----------~-------------------- 227 (692)
.+||+|+|...+.- ..+.+.+. .......+.+.||||+|.++= -
T Consensus 214 -~~DItYgTn~EfgF-DYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~ 291 (822)
T 3jux_A 214 -LCDVTYGTNNEFGF-DYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVK 291 (822)
T ss_dssp -HSSEEEEEHHHHHH-HHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCB
T ss_pred -cCCCEEccCcchhh-HhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCc
Confidence 57999999997741 12233221 122346689999999997530 0
Q ss_pred CCCc-----------------------------hHH----HHHHH-HHH-------------------------------
Q 035988 228 GHDF-----------------------------RPD----YKNLG-ILK------------------------------- 242 (692)
Q Consensus 228 g~~f-----------------------------r~~----~~~l~-~l~------------------------------- 242 (692)
+.+| .+. +..+. .++
T Consensus 292 ~~dy~vdek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~g 371 (822)
T 3jux_A 292 DKDFTVDEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPG 371 (822)
T ss_dssp TTTEEECCSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCS
T ss_pred CCcEEEEcccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCC
Confidence 0000 000 00000 000
Q ss_pred -----------------------------------hhCCCCCEEEEecccchhhHHHHHHHhcccceEEEeccCCCCcce
Q 035988 243 -----------------------------------TQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLF 287 (692)
Q Consensus 243 -----------------------------------~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~ 287 (692)
+.++ .+.+||+|+... ...+.+..++. ++..+.++|...
T Consensus 372 rr~s~GLHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~--kL~GMTGTa~te-~~Ef~~iY~l~---vv~IPtnkp~~R 445 (822)
T 3jux_A 372 RRYSGGLHQAIEAKEGVPIKEESITYATITFQNYFRMYE--KLAGMTGTAKTE-ESEFVQVYGME---VVVIPTHKPMIR 445 (822)
T ss_dssp CCCGGGHHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSS--EEEEEESSCGGG-HHHHHHHSCCC---EEECCCSSCCCC
T ss_pred CcCchHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhh--HHeEECCCCchH-HHHHHHHhCCe---EEEECCCCCcce
Confidence 0111 245699999765 45666766655 334466677554
Q ss_pred EEEe-eccCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCC
Q 035988 288 YMVR-EKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKL 366 (692)
Q Consensus 288 ~~v~-~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~ 366 (692)
.... ........+...+...+......+.++||||+|++.++.++..|+..|+++..+||+....++..+.+.|+.|
T Consensus 446 ~d~~d~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g-- 523 (822)
T 3jux_A 446 KDHDDLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG-- 523 (822)
T ss_dssp EECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--
T ss_pred eecCcEEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--
Confidence 4331 1112345667788888876544688999999999999999999999999999999997777777777777776
Q ss_pred cEEEeccccccccCCC--------CccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCH
Q 035988 367 QVIVGTVAFGMGINKP--------DVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADV 424 (692)
Q Consensus 367 ~ILVaT~~~~~GIDip--------~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~ 424 (692)
.|+|||++++||+|++ +..+||++++|.|...|.||+||+||.|.+|.+++|++..|.
T Consensus 524 ~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 524 MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp CEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred eEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 5999999999999998 566999999999999999999999999999999999999884
No 55
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.98 E-value=2.3e-31 Score=299.26 Aligned_cols=306 Identities=15% Similarity=0.139 Sum_probs=214.2
Q ss_pred CCCHHHHHHHHHHH----cCCCEEEEecCCChhHHHHHHHHHh--c---CCeEEEEcccHHHHHHHHHHHHHc--CCCEE
Q 035988 91 AYRANQQEIINAVL----SGRDVLVIMAAGGGKSLCYQLPAVL--R---EGIALVVSPLLSLIQDQVMCLAAL--GIPAH 159 (692)
Q Consensus 91 ~~r~~Q~~ai~~il----~g~dviv~apTGsGKTl~~~lpal~--~---~~~~lvi~Pt~~L~~q~~~~l~~~--gi~~~ 159 (692)
.++|+|.++++.+. .++++|+.++||+|||++++..+.. . .+++|||+| .+|+.|+.++++++ +.++.
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qw~~e~~~~~~~~~v~ 115 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICP-LSVLKNWEEELSKFAPHLRFA 115 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEEC-STTHHHHHHHHHHHCTTSCEE
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEcc-HHHHHHHHHHHHHHCCCceEE
Confidence 79999999998874 5789999999999999987543321 1 368999999 57999999999987 45666
Q ss_pred EEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHH
Q 035988 160 MLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLG 239 (692)
Q Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~ 239 (692)
.+.++.... ....++|+|+||+.+..... .....+++||+||||++...+. ...
T Consensus 116 ~~~g~~~~~-----------~~~~~~ivi~t~~~l~~~~~--------l~~~~~~~vIvDEaH~~kn~~~-------~~~ 169 (500)
T 1z63_A 116 VFHEDRSKI-----------KLEDYDIILTTYAVLLRDTR--------LKEVEWKYIVIDEAQNIKNPQT-------KIF 169 (500)
T ss_dssp ECSSSTTSC-----------CGGGSSEEEEEHHHHTTCHH--------HHTCCEEEEEEETGGGGSCTTS-------HHH
T ss_pred EEecCchhc-----------cccCCcEEEeeHHHHhccch--------hcCCCcCEEEEeCccccCCHhH-------HHH
Confidence 666554221 11268999999999875432 1234789999999999865431 111
Q ss_pred HHHhhCCCCCEEEEecccchhhHHHHHHHhccc----------------------------------ceEEEecc-----
Q 035988 240 ILKTQFPDVPMMALTATATQKVQNDLMEMLHIR----------------------------------KCIKFVST----- 280 (692)
Q Consensus 240 ~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~----------------------------------~~~~~~~~----- 280 (692)
.....++....++|||||..+...++...+.+- .+..+...
T Consensus 170 ~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~ 249 (500)
T 1z63_A 170 KAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKA 249 (500)
T ss_dssp HHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHH
T ss_pred HHHHhhccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccc
Confidence 222234555679999999665444433222110 01111100
Q ss_pred --CCCCcceEEEeecc-C------------------------------------------------------cchHHHHH
Q 035988 281 --INRPNLFYMVREKS-S------------------------------------------------------VGKVVIDE 303 (692)
Q Consensus 281 --~~r~~l~~~v~~~~-~------------------------------------------------------~~~~~~~~ 303 (692)
..-|.......... . ....++..
T Consensus 250 ~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~ 329 (500)
T 1z63_A 250 IINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIR 329 (500)
T ss_dssp HHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHH
T ss_pred hhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHH
Confidence 01122111111100 0 00123344
Q ss_pred HHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHC-CCceeEeccCCCHHHHHHHHHHHhcC-CCc-EEEeccccccccC
Q 035988 304 IAKYIQESYPNSESGIVYCFSRKECEQVAQELRQR-GISADYYHADMDINAREKVHMRWSKN-KLQ-VIVGTVAFGMGIN 380 (692)
Q Consensus 304 l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~-g~~v~~~h~~~~~~eR~~~~~~f~~g-~~~-ILVaT~~~~~GID 380 (692)
+.+++......+.++||||+++..++.++..|... |+.+..+||+++.++|..+++.|++| ..+ +|++|.++++|+|
T Consensus 330 l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Gln 409 (500)
T 1z63_A 330 TMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGIN 409 (500)
T ss_dssp HHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCC
T ss_pred HHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCc
Confidence 55666655557889999999999999999999985 99999999999999999999999998 555 7999999999999
Q ss_pred CCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEe--ecCCCC
Q 035988 381 KPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLL--FFRPAD 423 (692)
Q Consensus 381 ip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~--l~~~~d 423 (692)
+|++++||++|+|+|+..|.|++||++|.|+...+.+ ++..+.
T Consensus 410 l~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~t 454 (500)
T 1z63_A 410 LTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGT 454 (500)
T ss_dssp CTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTS
T ss_pred hhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCC
Confidence 9999999999999999999999999999998876644 444443
No 56
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.97 E-value=1.6e-29 Score=256.75 Aligned_cols=203 Identities=22% Similarity=0.276 Sum_probs=169.1
Q ss_pred CCCccCCCCCccccccccCCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc---
Q 035988 54 SPIQYGGSSSTAVENWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR--- 130 (692)
Q Consensus 54 ~~~~~g~~~~~~~~~w~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~--- 130 (692)
.+...|.+.|.++.+|. .+++++.+.+.+.+ +||..|+|+|.++|+.+++|+|++++||||+|||++|++|++..
T Consensus 16 ~i~~~~~~~p~~~~~f~-~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~ 93 (242)
T 3fe2_A 16 EITVRGHNCPKPVLNFY-EANFPANVMDVIAR-QNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINH 93 (242)
T ss_dssp TEEEESSCCCCCCSSTT-TTTCCHHHHHHHHT-TTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred ceEEeCCCCCCccCCHh-hcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHh
Confidence 34556778899999998 68899999999986 69999999999999999999999999999999999999999853
Q ss_pred --------CCeEEEEcccHHHHHHHHHHHHHc----CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchH
Q 035988 131 --------EGIALVVSPLLSLIQDQVMCLAAL----GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSK 198 (692)
Q Consensus 131 --------~~~~lvi~Pt~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~ 198 (692)
++++||++||++|+.|+.+.++++ ++.+..+.|+........... . +++|+|+||+++..
T Consensus 94 ~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~---~~~I~v~Tp~~l~~-- 165 (242)
T 3fe2_A 94 QPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE---R---GVEICIATPGRLID-- 165 (242)
T ss_dssp SCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH---H---CCSEEEECHHHHHH--
T ss_pred ccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc---C---CCCEEEECHHHHHH--
Confidence 568999999999999999888875 889999998887665443332 2 68999999998753
Q ss_pred HHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccc
Q 035988 199 RFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRK 273 (692)
Q Consensus 199 ~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~ 273 (692)
++. .....+.+++++||||||++.+|| |++.+.. .+....++.++++||||+++.+...+..++..+.
T Consensus 166 -~l~--~~~~~~~~~~~lViDEah~l~~~~--~~~~~~~--i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~ 233 (242)
T 3fe2_A 166 -FLE--CGKTNLRRTTYLVLDEADRMLDMG--FEPQIRK--IVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYI 233 (242)
T ss_dssp -HHH--HTSCCCTTCCEEEETTHHHHHHTT--CHHHHHH--HHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCE
T ss_pred -HHH--cCCCCcccccEEEEeCHHHHhhhC--cHHHHHH--HHHhCCccceEEEEEeecCHHHHHHHHHHCCCCE
Confidence 221 233467889999999999999999 8888887 3455557889999999999999888888876443
No 57
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.96 E-value=2.3e-29 Score=253.04 Aligned_cols=200 Identities=18% Similarity=0.247 Sum_probs=161.2
Q ss_pred ccCCCCCccccccccCCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHh-------
Q 035988 57 QYGGSSSTAVENWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVL------- 129 (692)
Q Consensus 57 ~~g~~~~~~~~~w~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~------- 129 (692)
..+...|.+..+|.+.+++++.+.+.+.+ +||..|+|+|.++++.+++|+|+++.||||+|||++|++|++.
T Consensus 9 ~~~~~~p~p~~~f~~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~ 87 (228)
T 3iuy_A 9 GEKRLIPKPTCRFKDAFQQYPDLLKSIIR-VGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPI 87 (228)
T ss_dssp SSCCCCCCCCCSHHHHHTTCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC----
T ss_pred CccCcCCCChhhHhhhhccCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccc
Confidence 44557799999999778999999999986 5999999999999999999999999999999999999999875
Q ss_pred -----cCCeEEEEcccHHHHHHHHHHHHHc---CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHH
Q 035988 130 -----REGIALVVSPLLSLIQDQVMCLAAL---GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFM 201 (692)
Q Consensus 130 -----~~~~~lvi~Pt~~L~~q~~~~l~~~---gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~ 201 (692)
.++++||++||++|+.|+.+.++++ ++++..+.|+......... +.. +++|+|+||+++.. +.
T Consensus 88 ~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~iiv~Tp~~l~~---~~ 158 (228)
T 3iuy_A 88 SREQRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---ISK---GVDIIIATPGRLND---LQ 158 (228)
T ss_dssp -----CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HHS---CCSEEEECHHHHHH---HH
T ss_pred hhhccCCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hcC---CCCEEEECHHHHHH---HH
Confidence 4578999999999999999999986 6788888877655432222 222 68999999998753 11
Q ss_pred HHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhccc
Q 035988 202 SKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIR 272 (692)
Q Consensus 202 ~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~ 272 (692)
......+.+++++||||||++.+|| |.+.+..+ +....++.++++||||+++.+...+..++..+
T Consensus 159 --~~~~~~~~~~~~lViDEah~~~~~~--~~~~~~~i--~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p 223 (228)
T 3iuy_A 159 --MNNSVNLRSITYLVIDEADKMLDME--FEPQIRKI--LLDVRPDRQTVMTSATWPDTVRQLALSYLKDP 223 (228)
T ss_dssp --HTTCCCCTTCCEEEECCHHHHHHTT--CHHHHHHH--HHHSCSSCEEEEEESCCCHHHHHHHHTTCSSC
T ss_pred --HcCCcCcccceEEEEECHHHHhccc--hHHHHHHH--HHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCC
Confidence 1234456789999999999999998 88888873 55556688999999999999888877766543
No 58
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=7.7e-29 Score=293.17 Aligned_cols=318 Identities=16% Similarity=0.147 Sum_probs=219.6
Q ss_pred CCCHHHHHHHHHHH----cCCCEEEEecCCChhHHHHHHHHH--h----cCCeEEEEcccHHHHHHHHHHHHHc--CCCE
Q 035988 91 AYRANQQEIINAVL----SGRDVLVIMAAGGGKSLCYQLPAV--L----REGIALVVSPLLSLIQDQVMCLAAL--GIPA 158 (692)
Q Consensus 91 ~~r~~Q~~ai~~il----~g~dviv~apTGsGKTl~~~lpal--~----~~~~~lvi~Pt~~L~~q~~~~l~~~--gi~~ 158 (692)
.+||+|.++++.++ .++++|+..+||+|||+.++..+. . ..+.+|||+| .+|+.|+.+.+.++ ++.+
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p~~~v 314 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAPDLNC 314 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHSTTCCE
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCCCceE
Confidence 78999999998876 688999999999999987654332 1 2578999999 78899999999986 4666
Q ss_pred EEEecCCChhHHHHHHHHH------HhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCch
Q 035988 159 HMLTSTTSKEDEKFIYKAL------EKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFR 232 (692)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l------~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr 232 (692)
..++|..........+... ......++|+|+|++.+.... ..+. ...+++|||||||++-..+.
T Consensus 315 ~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~---~~l~----~~~w~~vIvDEaH~lkn~~s--- 384 (800)
T 3mwy_W 315 ICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDR---AELG----SIKWQFMAVDEAHRLKNAES--- 384 (800)
T ss_dssp EECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTH---HHHH----TSEEEEEEETTGGGGCCSSS---
T ss_pred EEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhH---HHHh----cCCcceeehhhhhhhcCchh---
Confidence 6666654332211111100 012336889999999886422 2222 23689999999999864332
Q ss_pred HHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccc-------------------------------eEEEecc-
Q 035988 233 PDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRK-------------------------------CIKFVST- 280 (692)
Q Consensus 233 ~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~-------------------------------~~~~~~~- 280 (692)
.+......++....++|||||-.+...++...+.+-. +..+...
T Consensus 385 ----~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k 460 (800)
T 3mwy_W 385 ----SLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLK 460 (800)
T ss_dssp ----HHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCG
T ss_pred ----HHHHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhH
Confidence 1112233344455799999995443333333222110 0000000
Q ss_pred ----CCCCcceEEEeecc-C------------------------------------------------------------
Q 035988 281 ----INRPNLFYMVREKS-S------------------------------------------------------------ 295 (692)
Q Consensus 281 ----~~r~~l~~~v~~~~-~------------------------------------------------------------ 295 (692)
...|.....+.... .
T Consensus 461 ~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~ 540 (800)
T 3mwy_W 461 KDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDG 540 (800)
T ss_dssp GGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC---
T ss_pred HhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccc
Confidence 00111000000000 0
Q ss_pred ------------cchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhc
Q 035988 296 ------------VGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSK 363 (692)
Q Consensus 296 ------------~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~ 363 (692)
....++..+.+++......+.++||||.....++.+...|...|+.+..+||+++.++|..+++.|++
T Consensus 541 ~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~ 620 (800)
T 3mwy_W 541 KMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNS 620 (800)
T ss_dssp -CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSS
T ss_pred cccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhC
Confidence 00123445666666665678899999999999999999999999999999999999999999999998
Q ss_pred CCC---cEEEeccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEe--ecCCCC
Q 035988 364 NKL---QVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLL--FFRPAD 423 (692)
Q Consensus 364 g~~---~ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~--l~~~~d 423 (692)
+.. .+|++|.+++.|||++.+++||+||+|+|+..+.|++||++|.|+...+.+ |++.+-
T Consensus 621 ~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~T 685 (800)
T 3mwy_W 621 PDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDT 685 (800)
T ss_dssp TTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTS
T ss_pred CCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCC
Confidence 654 499999999999999999999999999999999999999999998865544 455543
No 59
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.96 E-value=5.4e-28 Score=279.13 Aligned_cols=315 Identities=17% Similarity=0.166 Sum_probs=210.2
Q ss_pred CCCHHHHHHHHHHH---------cCCCEEEEecCCChhHHHHHHHHH--hc--------CCeEEEEcccHHHHHHHHHHH
Q 035988 91 AYRANQQEIINAVL---------SGRDVLVIMAAGGGKSLCYQLPAV--LR--------EGIALVVSPLLSLIQDQVMCL 151 (692)
Q Consensus 91 ~~r~~Q~~ai~~il---------~g~dviv~apTGsGKTl~~~lpal--~~--------~~~~lvi~Pt~~L~~q~~~~l 151 (692)
.+||+|.+++..+. .++.+|+..+||+|||+.++..+. .. .+++|||+|+ +|+.||.+++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 69999999999875 345689999999999988764432 21 2468999997 8999999999
Q ss_pred HHc---CCCEEEEecCCChhHHHHHHHHHHhc---CCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCccccc
Q 035988 152 AAL---GIPAHMLTSTTSKEDEKFIYKALEKG---EGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCS 225 (692)
Q Consensus 152 ~~~---gi~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~ 225 (692)
.++ .+.+..+.++.... ........... ....+|+|+|++.+... ........+++||+||||++-
T Consensus 134 ~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~-------~~~l~~~~~~~vI~DEaH~ik 205 (644)
T 1z3i_X 134 GKWLGGRVQPVAIDGGSKDE-IDSKLVNFISQQGMRIPTPILIISYETFRLH-------AEVLHKGKVGLVICDEGHRLK 205 (644)
T ss_dssp HHHHGGGCCEEEECSSCHHH-HHHHHHHHHCCCSSCCSCCEEEEEHHHHHHH-------TTTTTTSCCCEEEETTGGGCC
T ss_pred HHHcCCCeeEEEEeCCCHHH-HHHHHHHHHHhcCCCCCCcEEEeeHHHHHhh-------HHHhhcCCccEEEEECceecC
Confidence 886 25566666543322 22222222221 12478999999977521 122233578999999999986
Q ss_pred ccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcc----------------------------------
Q 035988 226 QWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHI---------------------------------- 271 (692)
Q Consensus 226 ~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~---------------------------------- 271 (692)
... ...+.. +. .++....++|||||-.+...++...+.+
T Consensus 206 n~~---~~~~~a---l~-~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~ 278 (644)
T 1z3i_X 206 NSD---NQTYLA---LN-SMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRA 278 (644)
T ss_dssp TTC---HHHHHH---HH-HHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHH
T ss_pred Chh---hHHHHH---HH-hcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHH
Confidence 432 112222 22 2345568999999854321111110000
Q ss_pred ------------cceEEEecc-----CCCCcceEEEeec-----------------------------------------
Q 035988 272 ------------RKCIKFVST-----INRPNLFYMVREK----------------------------------------- 293 (692)
Q Consensus 272 ------------~~~~~~~~~-----~~r~~l~~~v~~~----------------------------------------- 293 (692)
-.+..+... ..-|.....+...
T Consensus 279 ~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk 358 (644)
T 1z3i_X 279 AGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKK 358 (644)
T ss_dssp HHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHH
Confidence 000000000 0001000000000
Q ss_pred --------------------------------------cCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHH
Q 035988 294 --------------------------------------SSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQEL 335 (692)
Q Consensus 294 --------------------------------------~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L 335 (692)
...+...+..+...+... .+.++||||+++..++.+...|
T Consensus 359 ~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~--~~~k~lIFs~~~~~~~~l~~~l 436 (644)
T 1z3i_X 359 LCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTT--TSDKVVLVSNYTQTLDLFEKLC 436 (644)
T ss_dssp HHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHH--CCCEEEEEESCHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhc--CCCEEEEEEccHHHHHHHHHHH
Confidence 000011223333333333 5789999999999999999999
Q ss_pred HHCCCceeEeccCCCHHHHHHHHHHHhcCCCc---EEEeccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCC
Q 035988 336 RQRGISADYYHADMDINAREKVHMRWSKNKLQ---VIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLP 412 (692)
Q Consensus 336 ~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~---ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~ 412 (692)
...|+.+..+||+++.++|..+++.|++|... +|++|.++++|||++++++||+||+|+|+..|.|++||++|.|+.
T Consensus 437 ~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~ 516 (644)
T 1z3i_X 437 RNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQK 516 (644)
T ss_dssp HHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCC
T ss_pred HHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCC
Confidence 99999999999999999999999999998764 899999999999999999999999999999999999999999988
Q ss_pred CeeEe--ecCCCC
Q 035988 413 SECLL--FFRPAD 423 (692)
Q Consensus 413 g~~i~--l~~~~d 423 (692)
..+.+ |+..+.
T Consensus 517 ~~v~v~~lv~~~t 529 (644)
T 1z3i_X 517 KTCYIYRLLSTGT 529 (644)
T ss_dssp SCEEEEEEEETTS
T ss_pred CceEEEEEEECCC
Confidence 65544 455553
No 60
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.96 E-value=1.4e-27 Score=275.53 Aligned_cols=208 Identities=20% Similarity=0.250 Sum_probs=150.6
Q ss_pred CceEEEEeCccccc-ccCCCchHHHHHHHHHHhh-------------------CCCCCEEEEecccchhhHHHHHHHhcc
Q 035988 212 RLSLISIDEAHCCS-QWGHDFRPDYKNLGILKTQ-------------------FPDVPMMALTATATQKVQNDLMEMLHI 271 (692)
Q Consensus 212 ~l~~iVIDEaH~l~-~~g~~fr~~~~~l~~l~~~-------------------~~~~~~i~lSAT~~~~~~~~i~~~l~~ 271 (692)
.-.++||||+|++. +|++.|+.....+..+... ....+++++|||+++..... .
T Consensus 325 ~~~llVlDEah~~~~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~~SAT~~~~~~~~-----~- 398 (664)
T 1c4o_A 325 EDFLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLPSALDNRPLRFEEFLERVSQVVFVSATPGPFELAH-----S- 398 (664)
T ss_dssp TTCEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSSCCCHHHHHHTCSEEEEEESSCCHHHHHH-----C-
T ss_pred hccEEEEecccccHHHHHHHHHHHHHHHHHHHHccccchhhhhcCcccHHHHHhhcCCEEEEecCCCHHHHHh-----h-
Confidence 34689999999864 4554444444333332221 02457899999998643221 0
Q ss_pred cceEEE-eccCCCCcceEEEeeccCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCC
Q 035988 272 RKCIKF-VSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMD 350 (692)
Q Consensus 272 ~~~~~~-~~~~~r~~l~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~ 350 (692)
...... ..+.........+..... ....+...+......+.++||||+|+..++.+++.|.+.|+++..+||+|+
T Consensus 399 ~~~~~~~~r~~~l~~p~i~v~~~~~----~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~ 474 (664)
T 1c4o_A 399 GRVVEQIIRPTGLLDPLVRVKPTEN----QILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELD 474 (664)
T ss_dssp SEEEEECSCTTCCCCCEEEEECSTT----HHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCC
T ss_pred hCeeeeeeccCCCCCCeEEEecccc----hHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCC
Confidence 111111 111111111222332222 233444444433336789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEEeCC-----CCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHH
Q 035988 351 INAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSL-----SKSVETYYQESGRAGRDGLPSECLLFFRPADVP 425 (692)
Q Consensus 351 ~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~~-----P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~ 425 (692)
+.+|..+++.|++|+++|||||+++++|+|+|++++||+++. |.|..+|+||+|||||.| +|.|++|+++.+..
T Consensus 475 ~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~ 553 (664)
T 1c4o_A 475 AFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSEA 553 (664)
T ss_dssp HHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHH
T ss_pred HHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHH
Confidence 999999999999999999999999999999999999999998 999999999999999995 89999999988766
Q ss_pred HHHHH
Q 035988 426 RQSSM 430 (692)
Q Consensus 426 ~~~~l 430 (692)
..+.+
T Consensus 554 ~~~~i 558 (664)
T 1c4o_A 554 MQRAI 558 (664)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 61
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.96 E-value=3.8e-28 Score=289.63 Aligned_cols=310 Identities=14% Similarity=0.128 Sum_probs=202.9
Q ss_pred CCCHHHHHHHHHHHc--------------CCCEEEEecCCChhHHHHHHHHHh--c----CCeEEEEcccHHHHHHHHHH
Q 035988 91 AYRANQQEIINAVLS--------------GRDVLVIMAAGGGKSLCYQLPAVL--R----EGIALVVSPLLSLIQDQVMC 150 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~--------------g~dviv~apTGsGKTl~~~lpal~--~----~~~~lvi~Pt~~L~~q~~~~ 150 (692)
.|||+|.+|++.++. +++++++++||||||+++ ++++. . ..++|||+|+++|+.|+.+.
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 599999999999876 368999999999999997 44432 1 25899999999999999999
Q ss_pred HHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCC
Q 035988 151 LAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHD 230 (692)
Q Consensus 151 l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~ 230 (692)
+..++... +.++.+.... ...+... ..+|+|+||+++.. +++.......+....+||+||||+.. +|
T Consensus 350 f~~f~~~~--v~~~~s~~~l---~~~L~~~--~~~IiVtTiqkl~~---~l~~~~~~~~~~~~~lvIiDEAHrs~-~~-- 416 (1038)
T 2w00_A 350 YQRFSPDS--VNGSENTAGL---KRNLDKD--DNKIIVTTIQKLNN---LMKAESDLPVYNQQVVFIFDECHRSQ-FG-- 416 (1038)
T ss_dssp HHTTSTTC--SSSSCCCHHH---HHHHHCS--SCCEEEEEHHHHHH---HHHHCCCCGGGGSCEEEEEESCCTTH-HH--
T ss_pred HHHhcccc--cccccCHHHH---HHHhcCC--CCCEEEEEHHHHHH---HHhcccchhccccccEEEEEccchhc-ch--
Confidence 99885431 2233333222 2233333 68999999998753 22111111234578999999999964 11
Q ss_pred chHHHHHHHHHHhhCCCCCEEEEecccchhhH----HHHHHHhcccceEEE-----eccCCCCcc-eEEE-eec------
Q 035988 231 FRPDYKNLGILKTQFPDVPMMALTATATQKVQ----NDLMEMLHIRKCIKF-----VSTINRPNL-FYMV-REK------ 293 (692)
Q Consensus 231 fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~----~~i~~~l~~~~~~~~-----~~~~~r~~l-~~~v-~~~------ 293 (692)
.. ...+...+|+.++++|||||..... ......+|....... ...+-.|-. .|.. ...
T Consensus 417 --~~---~~~I~~~~p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~ 491 (1038)
T 2w00_A 417 --EA---QKNLKKKFKRYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLET 491 (1038)
T ss_dssp --HH---HHHHHHHCSSEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHT
T ss_pred --HH---HHHHHHhCCcccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccc
Confidence 11 2356677889999999999975321 122233332100000 000111100 0000 000
Q ss_pred --c------------CcchHHHHHHHHHH----HHhC------CCCCceEEEEeccchHHHHHHHHHHCC----------
Q 035988 294 --S------------SVGKVVIDEIAKYI----QESY------PNSESGIVYCFSRKECEQVAQELRQRG---------- 339 (692)
Q Consensus 294 --~------------~~~~~~~~~l~~~l----~~~~------~~~~~~IIf~~s~~~~e~l~~~L~~~g---------- 339 (692)
. -.....+..+...+ .... ..+.++||||+|+..|..+++.|.+.+
T Consensus 492 e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~ 571 (1038)
T 2w00_A 492 ETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATY 571 (1038)
T ss_dssp CCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSC
T ss_pred cccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhccccccc
Confidence 0 00111223333333 2211 134689999999999999999998754
Q ss_pred --Cce-eEeccC----------C----------CH-----------------------------HHHHHHHHHHhcCCCc
Q 035988 340 --ISA-DYYHAD----------M----------DI-----------------------------NAREKVHMRWSKNKLQ 367 (692)
Q Consensus 340 --~~v-~~~h~~----------~----------~~-----------------------------~eR~~~~~~f~~g~~~ 367 (692)
+++ .++||+ + ++ .+|..++++|++|+++
T Consensus 572 ~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ 651 (1038)
T 2w00_A 572 KPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDID 651 (1038)
T ss_dssp CCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSS
T ss_pred ccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCe
Confidence 455 456642 2 22 1488899999999999
Q ss_pred EEEeccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCC----CeeEeecC
Q 035988 368 VIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLP----SECLLFFR 420 (692)
Q Consensus 368 ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~----g~~i~l~~ 420 (692)
|||+|+++.+|+|+|.+ .++.+|.|.+...|+|++||++|.+.. |.++.|..
T Consensus 652 ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 652 LLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp EEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred EEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 99999999999999999 678899999999999999999998764 66666654
No 62
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.95 E-value=6.8e-27 Score=236.29 Aligned_cols=189 Identities=20% Similarity=0.295 Sum_probs=150.4
Q ss_pred CccccccccCCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc----------CC
Q 035988 63 STAVENWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR----------EG 132 (692)
Q Consensus 63 ~~~~~~w~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~----------~~ 132 (692)
+.+..+|. .+++++.+.+.|.+ +||..|+|+|.++++.+++|+|+++.||||+|||++|++|++.. ++
T Consensus 21 ~~~~~~f~-~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~ 98 (236)
T 2pl3_A 21 VNEITRFS-DFPLSKKTLKGLQE-AQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGL 98 (236)
T ss_dssp GGGCSBGG-GSCCCHHHHHHHHH-TTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCC
T ss_pred CcccCCHh-hcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCc
Confidence 45566787 68899999999985 69999999999999999999999999999999999999998743 56
Q ss_pred eEEEEcccHHHHHHHHHHHHHcC----CCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHh--
Q 035988 133 IALVVSPLLSLIQDQVMCLAALG----IPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEK-- 206 (692)
Q Consensus 133 ~~lvi~Pt~~L~~q~~~~l~~~g----i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~-- 206 (692)
++||++|+++|+.|+.+.+++++ +.+..+.|+.......... ..++|+|+||+++.. .+..
T Consensus 99 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~iiv~Tp~~l~~------~l~~~~ 165 (236)
T 2pl3_A 99 GVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-------NNINILVCTPGRLLQ------HMDETV 165 (236)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-------TTCSEEEECHHHHHH------HHHHCS
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-------CCCCEEEECHHHHHH------HHHhcC
Confidence 89999999999999999999874 7788888876654332222 168999999998753 2222
Q ss_pred hhhcCCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhc
Q 035988 207 CHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLH 270 (692)
Q Consensus 207 ~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~ 270 (692)
...+.+++++||||||++.+|| |...+.. .+....++.++++||||+++.+......++.
T Consensus 166 ~~~~~~~~~lViDEah~~~~~~--~~~~~~~--i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~ 225 (236)
T 2pl3_A 166 SFHATDLQMLVLDEADRILDMG--FADTMNA--VIENLPKKRQTLLFSATQTKSVKDLARLSLK 225 (236)
T ss_dssp SCCCTTCCEEEETTHHHHHHTT--THHHHHH--HHHTSCTTSEEEEEESSCCHHHHHHHHHSCS
T ss_pred CcccccccEEEEeChHHHhcCC--cHHHHHH--HHHhCCCCCeEEEEEeeCCHHHHHHHHHhCC
Confidence 2356789999999999999998 7776665 2333345778999999999988776665554
No 63
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.95 E-value=3.5e-27 Score=237.56 Aligned_cols=195 Identities=17% Similarity=0.225 Sum_probs=150.3
Q ss_pred CCCCCccccccccCCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc------CC
Q 035988 59 GGSSSTAVENWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR------EG 132 (692)
Q Consensus 59 g~~~~~~~~~w~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~------~~ 132 (692)
++..|.+..+|. .+++++.+.+.+.+ +||..|+|+|.++++.+++|+|+++.+|||+|||++|++|++.. ++
T Consensus 16 ~~~~~~~~~~f~-~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~ 93 (230)
T 2oxc_A 16 GDVLLAEPADFE-SLLLSRPVLEGLRA-AGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLST 93 (230)
T ss_dssp --------CCGG-GGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSC
T ss_pred CCCCCCCCCCHh-hcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCc
Confidence 445566777888 67899999999985 79999999999999999999999999999999999999998753 36
Q ss_pred eEEEEcccHHHHHHHHHHHHHc-----CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhh
Q 035988 133 IALVVSPLLSLIQDQVMCLAAL-----GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKC 207 (692)
Q Consensus 133 ~~lvi~Pt~~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~ 207 (692)
++||++|+++|+.|+.+.++++ ++++..+.|+.......... ..++|+|+||+++.. ++. ...
T Consensus 94 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~Iiv~Tp~~l~~---~~~--~~~ 161 (230)
T 2oxc_A 94 QILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-------KKCHIAVGSPGRIKQ---LIE--LDY 161 (230)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-------TSCSEEEECHHHHHH---HHH--TTS
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-------cCCCEEEECHHHHHH---HHh--cCC
Confidence 8999999999999999999986 57788888887765433221 268999999998753 211 223
Q ss_pred hhcCCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhc
Q 035988 208 HHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLH 270 (692)
Q Consensus 208 ~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~ 270 (692)
..+.+++++||||||++.++| .|.+.+..+ +....++.++++||||+++.+.+.+..+++
T Consensus 162 ~~~~~~~~lViDEah~~~~~~-~~~~~~~~i--~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~ 221 (230)
T 2oxc_A 162 LNPGSIRLFILDEADKLLEEG-SFQEQINWI--YSSLPASKQMLAVSATYPEFLANALTKYMR 221 (230)
T ss_dssp SCGGGCCEEEESSHHHHHSTT-SSHHHHHHH--HHHSCSSCEEEEEESCCCHHHHHHHTTTCS
T ss_pred cccccCCEEEeCCchHhhcCc-chHHHHHHH--HHhCCCCCeEEEEEeccCHHHHHHHHHHcC
Confidence 355788999999999999887 377776653 333334778999999999887776666554
No 64
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.95 E-value=1.6e-25 Score=254.41 Aligned_cols=323 Identities=19% Similarity=0.216 Sum_probs=235.0
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHh---cCCeEEEEcccHHHHHHHHHHHHHc-
Q 035988 79 ADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVL---REGIALVVSPLLSLIQDQVMCLAAL- 154 (692)
Q Consensus 79 ~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~---~~~~~lvi~Pt~~L~~q~~~~l~~~- 154 (692)
+.++-++.+|+ .|+|+|..+++.+++|+ ++.|+||+|||++|.+|+++ .+..++|++||++|+.|..+.+..+
T Consensus 68 vREAs~R~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~ 144 (997)
T 2ipc_A 68 TRESAKRYLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVY 144 (997)
T ss_dssp HHHHHHHHTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 44555667899 89999999999999998 99999999999999999963 3668999999999999999888764
Q ss_pred ---CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhh-------hhcC---CceEEEEeCc
Q 035988 155 ---GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKC-------HHAG---RLSLISIDEA 221 (692)
Q Consensus 155 ---gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~-------~~~~---~l~~iVIDEa 221 (692)
|+++.++.|+.+...+...+ .++|+|+||+.+. .+++... ..+. .+.++|||||
T Consensus 145 ~~lGLsv~~i~Gg~~~~~r~~ay--------~~DIvyGTpgrlg-----fDyLrd~m~~~~~~l~~r~d~~l~~lIIDEa 211 (997)
T 2ipc_A 145 RGLGLSVGVIQHASTPAERRKAY--------LADVTYVTNSELG-----FDYLRDNMAISPDQLVLRHDHPLHYAIIDEV 211 (997)
T ss_dssp HTTTCCEEECCTTCCHHHHHHHH--------TSSEEEEEHHHHH-----HHHHHHTSCSSTTTCCSCSSSSSCEEEETTH
T ss_pred HhcCCeEEEEeCCCCHHHHHHHc--------CCCEEEECchhhh-----hHHHHHhhhcchhhcccccCCCcceEEEech
Confidence 89999999998765433322 5899999999762 2333322 3456 8999999999
Q ss_pred cccc-ccCCC----------chHHHHHHHHHHhhCC--------------------------------------------
Q 035988 222 HCCS-QWGHD----------FRPDYKNLGILKTQFP-------------------------------------------- 246 (692)
Q Consensus 222 H~l~-~~g~~----------fr~~~~~l~~l~~~~~-------------------------------------------- 246 (692)
|.++ +-+.. -...|..+..+...++
T Consensus 212 DsmLiDeartPLIISgp~~~~~~lY~~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~ 291 (997)
T 2ipc_A 212 DSILIDEARTPLIISGPAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEG 291 (997)
T ss_dssp HHHTTSSTTSCEEEEESCSSCHHHHHHHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHH
T ss_pred HHHHHhCCCCCeeeeCCCccchHHHHHHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCcc
Confidence 9975 21100 0001111111110000
Q ss_pred ------------------------------------------------C-------------------------------
Q 035988 247 ------------------------------------------------D------------------------------- 247 (692)
Q Consensus 247 ------------------------------------------------~------------------------------- 247 (692)
+
T Consensus 292 Ly~~~n~~l~~~i~~ALrA~~lf~rd~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~ 371 (997)
T 2ipc_A 292 LFSPENMELAHMLIQAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITY 371 (997)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHSSCHHHHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECH
T ss_pred ccCchhHHHHHHHHHHHHHHHHHhcCCCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeH
Confidence 0
Q ss_pred -------CCEEEEecccchhhHHHHHHHhcccceEEEeccCCCCcceEEEeec-cCcchHHHHHHHHHHHHhCCCCCceE
Q 035988 248 -------VPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREK-SSVGKVVIDEIAKYIQESYPNSESGI 319 (692)
Q Consensus 248 -------~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~-~~~~~~~~~~l~~~l~~~~~~~~~~I 319 (692)
..+.+||+|+... ...+.+..++. ++.-+.++|......... ......++..+.+.+.+.+..+.|+|
T Consensus 372 QnyFr~Y~kLsGMTGTA~tE-~~Ef~~iY~l~---Vv~IPTn~p~~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVL 447 (997)
T 2ipc_A 372 QNFFRLYEKRAGMTGTAKTE-EKEFQEIYGMD---VVVVPTNRPVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVL 447 (997)
T ss_dssp HHHHTTSSEEEEEESSCGGG-HHHHHHHHCCC---EEECCCSSCCCCEEEEEEEESSHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHhChHheecCCCchHH-HHHHHHHhCCC---EEEcCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHHCCCCEE
Confidence 0134577777654 34455555554 344567777665432221 22345667788888877666899999
Q ss_pred EEEeccchHHHHHHHHH---------------------------------------------------------------
Q 035988 320 VYCFSRKECEQVAQELR--------------------------------------------------------------- 336 (692)
Q Consensus 320 If~~s~~~~e~l~~~L~--------------------------------------------------------------- 336 (692)
|+|.|++.++.++..|+
T Consensus 448 VgT~SIe~SE~LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 527 (997)
T 2ipc_A 448 VGTISIEKSERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAW 527 (997)
T ss_dssp EECSSHHHHHHHHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccc
Confidence 99999999999999999
Q ss_pred -------------HCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCc-------------------
Q 035988 337 -------------QRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDV------------------- 384 (692)
Q Consensus 337 -------------~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v------------------- 384 (692)
+.|++..++++.-...+-..+.+.-+.| .|.|||+++|||.||.=-
T Consensus 528 ~~~~~~~~~~~~~~~gI~H~VLNAK~he~EAeIIAqAG~~G--aVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~ 605 (997)
T 2ipc_A 528 EGLKRAVHTLAVLRQGIPHQVLNAKHHAREAEIVAQAGRSK--TVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRY 605 (997)
T ss_dssp HHHHHHHHHHHHHHHCCCCCEECSSSHHHHHHHHHTTTSTT--CEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTT
T ss_pred cccchhhhhhHHHHcCCCeeeccccchHHHHHHHHhcCCCC--eEEEEecccCCCcCeecCCCHHHHHHHHHHhhccccc
Confidence 5688888888887655554454444444 499999999999998532
Q ss_pred c-------------------------------------------------------EEEEeCCCCCHHHHHHHHhhcCCC
Q 035988 385 R-------------------------------------------------------FVIHHSLSKSVETYYQESGRAGRD 409 (692)
Q Consensus 385 ~-------------------------------------------------------~VI~~~~P~s~~~y~Qr~GRagR~ 409 (692)
. +||....+.|..-=.|-.||+||.
T Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQ 685 (997)
T 2ipc_A 606 EWKVELFIKKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQ 685 (997)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCS
T ss_pred ccccccccccccccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccC
Confidence 1 799999999999999999999999
Q ss_pred CCCCeeEeecCCCC
Q 035988 410 GLPSECLLFFRPAD 423 (692)
Q Consensus 410 G~~g~~i~l~~~~d 423 (692)
|.||.+..|++..|
T Consensus 686 GDPGsSrF~LSLeD 699 (997)
T 2ipc_A 686 GDPGGSRFYVSFDD 699 (997)
T ss_dssp SCCCEEEEEEESSS
T ss_pred CCCCCeEEEEECCh
Confidence 99999999988776
No 65
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.95 E-value=8e-27 Score=237.89 Aligned_cols=194 Identities=20% Similarity=0.261 Sum_probs=156.0
Q ss_pred CccccccccCCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc------CCeEEE
Q 035988 63 STAVENWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR------EGIALV 136 (692)
Q Consensus 63 ~~~~~~w~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~------~~~~lv 136 (692)
+.+..+|. .+++++.+.+.+.+ +||..|+|+|.++++.+++|+|+++.||||+|||++|++|++.. ++++||
T Consensus 39 ~~~~~~f~-~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~li 116 (249)
T 3ber_A 39 EEETKTFK-DLGVTDVLCEACDQ-LGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALV 116 (249)
T ss_dssp HHHHCCTG-GGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEE
T ss_pred ccccCCHH-HcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEE
Confidence 34456677 67899999999975 79999999999999999999999999999999999999998753 457999
Q ss_pred EcccHHHHHHHHHHHHHc----CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCC
Q 035988 137 VSPLLSLIQDQVMCLAAL----GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGR 212 (692)
Q Consensus 137 i~Pt~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~ 212 (692)
++|+++|+.|+.+.++++ ++++..+.|+.......... . ..++|+|+||+++.. .+.. .....+.+
T Consensus 117 l~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~---~~~~I~v~Tp~~l~~---~l~~-~~~~~l~~ 186 (249)
T 3ber_A 117 LTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL---A---KKPHIIIATPGRLID---HLEN-TKGFNLRA 186 (249)
T ss_dssp ECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH---H---TCCSEEEECHHHHHH---HHHH-STTCCCTT
T ss_pred EeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh---c---CCCCEEEECHHHHHH---HHHc-CCCcCccc
Confidence 999999999999999876 78899999887765433222 1 278999999998753 2111 12235678
Q ss_pred ceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhccc
Q 035988 213 LSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIR 272 (692)
Q Consensus 213 l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~ 272 (692)
++++||||||++.+++ |+..+..+ +....++.++++||||++..+.+.+..++..+
T Consensus 187 ~~~lViDEah~l~~~~--~~~~l~~i--~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p 242 (249)
T 3ber_A 187 LKYLVMDEADRILNMD--FETEVDKI--LKVIPRDRKTFLFSATMTKKVQKLQRAALKNP 242 (249)
T ss_dssp CCEEEECSHHHHHHTT--CHHHHHHH--HHSSCSSSEEEEEESSCCHHHHHHHHHHCSSC
T ss_pred cCEEEEcChhhhhccC--hHHHHHHH--HHhCCCCCeEEEEeccCCHHHHHHHHHHCCCC
Confidence 9999999999999987 88887763 33444578999999999999888877777544
No 66
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.95 E-value=8.9e-27 Score=230.12 Aligned_cols=188 Identities=21% Similarity=0.249 Sum_probs=150.4
Q ss_pred ccccCCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc------CCeEEEEcccH
Q 035988 68 NWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR------EGIALVVSPLL 141 (692)
Q Consensus 68 ~w~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~------~~~~lvi~Pt~ 141 (692)
+|. .+++++.+.+.+.+ +||..|+|+|.++++.+++|+|+++.||||+|||++|++|++.. ++++||++|++
T Consensus 4 ~f~-~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~ 81 (206)
T 1vec_A 4 EFE-DYCLKRELLMGIFE-MGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTR 81 (206)
T ss_dssp SGG-GSCCCHHHHHHHHT-TTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCH
T ss_pred Chh-hcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcH
Confidence 465 67899999999985 79999999999999999999999999999999999999999854 35899999999
Q ss_pred HHHHHHHHHHHHc-----CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEE
Q 035988 142 SLIQDQVMCLAAL-----GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLI 216 (692)
Q Consensus 142 ~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~i 216 (692)
+|+.|+.+.++++ ++.+..+.|+........ .+ ...++|+|+||+++.. ++. .....+.+++++
T Consensus 82 ~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~---~~~~~i~v~T~~~l~~---~~~--~~~~~~~~~~~l 150 (206)
T 1vec_A 82 ELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM---RL---DDTVHVVIATPGRILD---LIK--KGVAKVDHVQMI 150 (206)
T ss_dssp HHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHH---HT---TSCCSEEEECHHHHHH---HHH--TTCSCCTTCCEE
T ss_pred HHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHH---hc---CCCCCEEEeCHHHHHH---HHH--cCCcCcccCCEE
Confidence 9999999999875 577888888776543221 11 2378999999998752 111 233456789999
Q ss_pred EEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhccc
Q 035988 217 SIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIR 272 (692)
Q Consensus 217 VIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~ 272 (692)
||||||++.+++ |...+..+ +....++.++++||||+++.+.+.+..+++.+
T Consensus 151 ViDEah~~~~~~--~~~~l~~i--~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p 202 (206)
T 1vec_A 151 VLDEADKLLSQD--FVQIMEDI--ILTLPKNRQILLYSATFPLSVQKFMNSHLEKP 202 (206)
T ss_dssp EEETHHHHTSTT--THHHHHHH--HHHSCTTCEEEEEESCCCHHHHHHHHHHCSSC
T ss_pred EEEChHHhHhhC--cHHHHHHH--HHhCCccceEEEEEeeCCHHHHHHHHHHcCCC
Confidence 999999998866 77776653 23333478999999999999888888877543
No 67
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.95 E-value=8e-27 Score=239.73 Aligned_cols=181 Identities=23% Similarity=0.301 Sum_probs=148.2
Q ss_pred CcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHh----------cCCeEEEEcccHHHH
Q 035988 75 WDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVL----------REGIALVVSPLLSLI 144 (692)
Q Consensus 75 ~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~----------~~~~~lvi~Pt~~L~ 144 (692)
+++.+.+.+.+ +||..|+|+|.++++.++.|+|++++||||+|||++|++|++. .+.++||++||++|+
T Consensus 61 l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La 139 (262)
T 3ly5_A 61 VNENTLKAIKE-MGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELA 139 (262)
T ss_dssp CCHHHHHHHHH-TTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHH
T ss_pred cCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHH
Confidence 88899999986 7999999999999999999999999999999999999999884 367899999999999
Q ss_pred HHHHHHHHHc----CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHh--hhhcCCceEEEE
Q 035988 145 QDQVMCLAAL----GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEK--CHHAGRLSLISI 218 (692)
Q Consensus 145 ~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~--~~~~~~l~~iVI 218 (692)
.|+++.++++ ++.+..+.|+......... +.. +++|+|+||+++.. .+.. ...+.++++|||
T Consensus 140 ~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~---~~~Iiv~Tp~~l~~------~~~~~~~~~~~~l~~lVi 207 (262)
T 3ly5_A 140 MQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGN---GINIIVATPGRLLD------HMQNTPGFMYKNLQCLVI 207 (262)
T ss_dssp HHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHH---CCSEEEECHHHHHH------HHHHCTTCCCTTCCEEEE
T ss_pred HHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcC---CCCEEEEcHHHHHH------HHHccCCcccccCCEEEE
Confidence 9999999985 5677888887765543322 222 58999999998753 2222 235678999999
Q ss_pred eCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhccc
Q 035988 219 DEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIR 272 (692)
Q Consensus 219 DEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~ 272 (692)
||||++.+|| |.+.+..+ +....++.++++||||+++.+.......+..+
T Consensus 208 DEah~l~~~~--~~~~l~~i--~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~ 257 (262)
T 3ly5_A 208 DEADRILDVG--FEEELKQI--IKLLPTRRQTMLFSATQTRKVEDLARISLKKE 257 (262)
T ss_dssp CSHHHHHHTT--CHHHHHHH--HHHSCSSSEEEEECSSCCHHHHHHHHHHCSSC
T ss_pred cChHHHhhhh--HHHHHHHH--HHhCCCCCeEEEEEecCCHHHHHHHHHHcCCC
Confidence 9999999998 88887763 34444578899999999999888777666533
No 68
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.95 E-value=9.2e-28 Score=244.09 Aligned_cols=206 Identities=19% Similarity=0.262 Sum_probs=158.1
Q ss_pred CCCccCCCCCcccccccc---CCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHh-
Q 035988 54 SPIQYGGSSSTAVENWSG---TFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVL- 129 (692)
Q Consensus 54 ~~~~~g~~~~~~~~~w~~---~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~- 129 (692)
.+...|.+.|.++.+|.+ .+++++.+.+.+.+ +||..|+|+|.++++.+++|+|+++.||||+|||++|++|++.
T Consensus 12 ~i~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~ 90 (245)
T 3dkp_A 12 KIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILD-AGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQ 90 (245)
T ss_dssp TEEEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEecCCCCCCcccCHHHhhhccCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHH
Confidence 345567788999999986 35899999999986 5999999999999999999999999999999999999999975
Q ss_pred ------cCCeEEEEcccHHHHHHHHHHHHHc----CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHH
Q 035988 130 ------REGIALVVSPLLSLIQDQVMCLAAL----GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKR 199 (692)
Q Consensus 130 ------~~~~~lvi~Pt~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~ 199 (692)
.+.++||++||++|+.|+.+.++++ ++.+..+.++..... ... ......++|+|+||+++..
T Consensus 91 l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~I~v~Tp~~l~~--- 162 (245)
T 3dkp_A 91 LKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFG--PKSSKKFDILVTTPNRLIY--- 162 (245)
T ss_dssp HCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTS--TTSCCCCCEEEECHHHHHH---
T ss_pred HhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---Hhh--hhhcCCCCEEEECHHHHHH---
Confidence 2458999999999999999999987 555555443321110 000 1112378999999997752
Q ss_pred HHHHHHh---hhhcCCceEEEEeCcccccccC-CCchHHHHHHHHHHhh-CCCCCEEEEecccchhhHHHHHHHhcccc
Q 035988 200 FMSKLEK---CHHAGRLSLISIDEAHCCSQWG-HDFRPDYKNLGILKTQ-FPDVPMMALTATATQKVQNDLMEMLHIRK 273 (692)
Q Consensus 200 ~~~~l~~---~~~~~~l~~iVIDEaH~l~~~g-~~fr~~~~~l~~l~~~-~~~~~~i~lSAT~~~~~~~~i~~~l~~~~ 273 (692)
.+.. ...+.+++++||||||++.+|+ ..|+..+..+ +... .++.++++||||+++.+...+...++.+.
T Consensus 163 ---~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~ 236 (245)
T 3dkp_A 163 ---LLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASI--FLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVI 236 (245)
T ss_dssp ---HHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHH--HHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCE
T ss_pred ---HHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHH--HHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCE
Confidence 2222 2456789999999999999876 3477777663 3333 35788999999999998888877776443
No 69
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.95 E-value=1.8e-27 Score=237.70 Aligned_cols=188 Identities=22% Similarity=0.303 Sum_probs=149.4
Q ss_pred cccccCCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc------CCeEEEEccc
Q 035988 67 ENWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR------EGIALVVSPL 140 (692)
Q Consensus 67 ~~w~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~------~~~~lvi~Pt 140 (692)
.+|. .+++++.+.+.+.+ +||..|+|+|.++++.+++|+|+++.||||+|||++|++|++.. ++++||++||
T Consensus 4 ~~f~-~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt 81 (219)
T 1q0u_A 4 TQFT-RFPFQPFIIEAIKT-LRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPT 81 (219)
T ss_dssp CCGG-GSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred CCHh-hCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCc
Confidence 3566 67899999999985 79999999999999999999999999999999999999999864 4689999999
Q ss_pred HHHHHHHHHHHHHc--------CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCC
Q 035988 141 LSLIQDQVMCLAAL--------GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGR 212 (692)
Q Consensus 141 ~~L~~q~~~~l~~~--------gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~ 212 (692)
++|+.|+.+.++++ ++.+..+.|+...... .......++|+|+||+++.. ++. .....+.+
T Consensus 82 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~------~~~~~~~~~Iiv~Tp~~l~~---~l~--~~~~~~~~ 150 (219)
T 1q0u_A 82 RELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKA------LEKLNVQPHIVIGTPGRIND---FIR--EQALDVHT 150 (219)
T ss_dssp HHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHT------TCCCSSCCSEEEECHHHHHH---HHH--TTCCCGGG
T ss_pred HHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHH------HHHcCCCCCEEEeCHHHHHH---HHH--cCCCCcCc
Confidence 99999999998876 5777777776543211 11112368999999998753 111 22335678
Q ss_pred ceEEEEeCcccccccCCCchHHHHHHHHHHhhC-CCCCEEEEecccchhhHHHHHHHhccc
Q 035988 213 LSLISIDEAHCCSQWGHDFRPDYKNLGILKTQF-PDVPMMALTATATQKVQNDLMEMLHIR 272 (692)
Q Consensus 213 l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~ 272 (692)
++++||||||++.+|| |...+.. +...+ ++.++++||||++..+.+.+..++..+
T Consensus 151 ~~~lViDEah~~~~~~--~~~~l~~---i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p 206 (219)
T 1q0u_A 151 AHILVVDEADLMLDMG--FITDVDQ---IAARMPKDLQMLVFSATIPEKLKPFLKKYMENP 206 (219)
T ss_dssp CCEEEECSHHHHHHTT--CHHHHHH---HHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSC
T ss_pred ceEEEEcCchHHhhhC--hHHHHHH---HHHhCCcccEEEEEecCCCHHHHHHHHHHcCCC
Confidence 9999999999999988 7666554 33333 478899999999999988888877544
No 70
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.95 E-value=6.2e-27 Score=236.92 Aligned_cols=196 Identities=20% Similarity=0.285 Sum_probs=149.7
Q ss_pred CCCccccccccCCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc------CCeE
Q 035988 61 SSSTAVENWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR------EGIA 134 (692)
Q Consensus 61 ~~~~~~~~w~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~------~~~~ 134 (692)
+.+.+..+|. .+++++.+.+.+.+ +||..|+|+|.++++.+++|+|+++.||||+|||++|++|++.. +.++
T Consensus 24 ~~~~~~~~f~-~l~l~~~l~~~l~~-~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~ 101 (237)
T 3bor_A 24 NWNEIVDNFD-DMNLKESLLRGIYA-YGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQA 101 (237)
T ss_dssp ---CCCCSGG-GSCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCE
T ss_pred CCCCccCChh-hcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceE
Confidence 4466677788 67899999999975 79999999999999999999999999999999999999999853 4699
Q ss_pred EEEcccHHHHHHHHHHHHHc----CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhc
Q 035988 135 LVVSPLLSLIQDQVMCLAAL----GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHA 210 (692)
Q Consensus 135 lvi~Pt~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~ 210 (692)
||++|+++|+.|+.+.++++ ++.+..+.|+...... ...+..+ .++|+|+||+++.. ++. .....+
T Consensus 102 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~l~~~--~~~Ilv~Tp~~l~~---~l~--~~~~~~ 171 (237)
T 3bor_A 102 LVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNE---MQKLQAE--APHIVVGTPGRVFD---MLN--RRYLSP 171 (237)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------C--CCSEEEECHHHHHH---HHH--TTSSCS
T ss_pred EEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHH---HHHHhcC--CCCEEEECHHHHHH---HHH--hCCcCc
Confidence 99999999999999999986 4667777766543322 2222222 58999999997753 111 233456
Q ss_pred CCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhccc
Q 035988 211 GRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIR 272 (692)
Q Consensus 211 ~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~ 272 (692)
.+++++||||||++.+++ |...+.. .+....++.++++||||+++.+.+.+..++..+
T Consensus 172 ~~~~~lViDEah~~~~~~--~~~~l~~--i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p 229 (237)
T 3bor_A 172 KWIKMFVLDEADEMLSRG--FKDQIYE--IFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDP 229 (237)
T ss_dssp TTCCEEEEESHHHHHHTT--CHHHHHH--HHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSC
T ss_pred ccCcEEEECCchHhhccC--cHHHHHH--HHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCC
Confidence 789999999999999988 7777665 344445678999999999999988888877633
No 71
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.95 E-value=2.5e-27 Score=242.12 Aligned_cols=200 Identities=17% Similarity=0.231 Sum_probs=156.4
Q ss_pred cCCCCCc--cccccccCCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc-----
Q 035988 58 YGGSSST--AVENWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR----- 130 (692)
Q Consensus 58 ~g~~~~~--~~~~w~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~----- 130 (692)
.|...|. ++.+|. .+++++.+.+.|.+ +||..|+|+|.++++.+++|+|+++.||||+|||++|++|++..
T Consensus 12 ~~~~~~~~~~~~~f~-~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~ 89 (253)
T 1wrb_A 12 TGPDYSATNVIENFD-ELKLDPTIRNNILL-ASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQD 89 (253)
T ss_dssp ECCSSSCCSCCCSSG-GGSCCCSTTTTTTT-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred eCCCCCCCCccCCHh-hCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhc
Confidence 3555555 777787 67788888888874 69999999999999999999999999999999999999998743
Q ss_pred ----------CCeEEEEcccHHHHHHHHHHHHHc----CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhc
Q 035988 131 ----------EGIALVVSPLLSLIQDQVMCLAAL----GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISK 196 (692)
Q Consensus 131 ----------~~~~lvi~Pt~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~ 196 (692)
++++||++||++|+.|+.+.++++ ++.+..+.|+........ .+ ...++|+|+||+++..
T Consensus 90 ~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~---~~~~~Ivv~Tp~~l~~ 163 (253)
T 1wrb_A 90 LNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIR---EV---QMGCHLLVATPGRLVD 163 (253)
T ss_dssp C------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHH---HH---SSCCSEEEECHHHHHH
T ss_pred cccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHH---Hh---CCCCCEEEECHHHHHH
Confidence 258999999999999999999876 567788888776543322 12 1268999999998753
Q ss_pred hHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHHHHhhCC--CCCEEEEecccchhhHHHHHHHhccc
Q 035988 197 SKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFP--DVPMMALTATATQKVQNDLMEMLHIR 272 (692)
Q Consensus 197 ~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~--~~~~i~lSAT~~~~~~~~i~~~l~~~ 272 (692)
++. .....+.+++++||||||++.++| |.+.+..+........ +.++++||||+++.+......++..+
T Consensus 164 ---~l~--~~~~~~~~~~~lViDEah~~~~~~--~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~ 234 (253)
T 1wrb_A 164 ---FIE--KNKISLEFCKYIVLDEADRMLDMG--FEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNY 234 (253)
T ss_dssp ---HHH--TTSBCCTTCCEEEEETHHHHHHTT--CHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSC
T ss_pred ---HHH--cCCCChhhCCEEEEeCHHHHHhCc--hHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCC
Confidence 211 223356789999999999999998 8888877432112222 67899999999999888888777533
No 72
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.95 E-value=7.7e-27 Score=233.81 Aligned_cols=194 Identities=20% Similarity=0.263 Sum_probs=151.7
Q ss_pred CCCccccccccCCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc------CCeE
Q 035988 61 SSSTAVENWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR------EGIA 134 (692)
Q Consensus 61 ~~~~~~~~w~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~------~~~~ 134 (692)
+.+.+..+|. .+++++.+.+.+.+ +||..|+|+|.++++.+++|+++++.+|||+|||++|++|++.. ++++
T Consensus 8 ~~~~~~~~f~-~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~ 85 (224)
T 1qde_A 8 NYDKVVYKFD-DMELDENLLRGVFG-YGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQA 85 (224)
T ss_dssp SCCCCCCCGG-GGTCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCE
T ss_pred ccCcccCChh-hcCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceE
Confidence 4466677887 67899999999985 69999999999999999999999999999999999999999852 4699
Q ss_pred EEEcccHHHHHHHHHHHHHc----CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhc
Q 035988 135 LVVSPLLSLIQDQVMCLAAL----GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHA 210 (692)
Q Consensus 135 lvi~Pt~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~ 210 (692)
||++|+++|+.|+.+.++++ ++++..+.|+......... ...++|+|+||+++.. .+. .....+
T Consensus 86 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~iiv~Tp~~l~~---~~~--~~~~~~ 153 (224)
T 1qde_A 86 LMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG-------LRDAQIVVGTPGRVFD---NIQ--RRRFRT 153 (224)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-----------------CTTCSEEEECHHHHHH---HHH--TTSSCC
T ss_pred EEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc-------CCCCCEEEECHHHHHH---HHH--hCCcch
Confidence 99999999999999999876 6778888877654432211 1148999999998753 111 234456
Q ss_pred CCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhccc
Q 035988 211 GRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIR 272 (692)
Q Consensus 211 ~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~ 272 (692)
.+++++||||||++.+|+ |...+..+ +....++.++++||||+++.+.+.+..+++.+
T Consensus 154 ~~~~~iViDEah~~~~~~--~~~~l~~i--~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p 211 (224)
T 1qde_A 154 DKIKMFILDEADEMLSSG--FKEQIYQI--FTLLPPTTQVVLLSATMPNDVLEVTTKFMRNP 211 (224)
T ss_dssp TTCCEEEEETHHHHHHTT--CHHHHHHH--HHHSCTTCEEEEEESSCCHHHHHHHHHHCSSC
T ss_pred hhCcEEEEcChhHHhhhh--hHHHHHHH--HHhCCccCeEEEEEeecCHHHHHHHHHHCCCC
Confidence 789999999999999988 87776663 33344678899999999999888888877644
No 73
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.94 E-value=3.2e-26 Score=226.14 Aligned_cols=188 Identities=19% Similarity=0.248 Sum_probs=151.2
Q ss_pred ccccCCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc---------CCeEEEEc
Q 035988 68 NWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR---------EGIALVVS 138 (692)
Q Consensus 68 ~w~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~---------~~~~lvi~ 138 (692)
+|. .+++++.+.+.+.+ +||..|+|+|.++++.+++|+++++.+|||+|||++|++|++.. ++++||++
T Consensus 2 ~f~-~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~ 79 (207)
T 2gxq_A 2 EFK-DFPLKPEILEALHG-RGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLT 79 (207)
T ss_dssp CGG-GSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEEC
T ss_pred Chh-hcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEE
Confidence 355 67899999999986 69999999999999999999999999999999999999998753 46899999
Q ss_pred ccHHHHHHHHHHHHHc--CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEE
Q 035988 139 PLLSLIQDQVMCLAAL--GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLI 216 (692)
Q Consensus 139 Pt~~L~~q~~~~l~~~--gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~i 216 (692)
|+++|+.|+.+.++++ ++++..+.|+........... . +++|+|+||+++.. ++. .....+.+++++
T Consensus 80 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~i~v~T~~~l~~---~~~--~~~~~~~~~~~i 148 (207)
T 2gxq_A 80 PTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL---R---GADAVVATPGRALD---YLR--QGVLDLSRVEVA 148 (207)
T ss_dssp SSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH---H---CCSEEEECHHHHHH---HHH--HTSSCCTTCSEE
T ss_pred CCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh---C---CCCEEEECHHHHHH---HHH--cCCcchhhceEE
Confidence 9999999999999987 467788888776544332222 1 68999999998753 221 234456789999
Q ss_pred EEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhccc
Q 035988 217 SIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIR 272 (692)
Q Consensus 217 VIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~ 272 (692)
||||||++.+++ |...+..+ +....++.+++++|||+++.+.+.+..+++.+
T Consensus 149 ViDEah~~~~~~--~~~~~~~i--~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p 200 (207)
T 2gxq_A 149 VLDEADEMLSMG--FEEEVEAL--LSATPPSRQTLLFSATLPSWAKRLAERYMKNP 200 (207)
T ss_dssp EEESHHHHHHTT--CHHHHHHH--HHTSCTTSEEEEECSSCCHHHHHHHHHHCSSC
T ss_pred EEEChhHhhccc--hHHHHHHH--HHhCCccCeEEEEEEecCHHHHHHHHHHcCCC
Confidence 999999999887 77777663 34444578899999999998887777776543
No 74
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.94 E-value=1.8e-26 Score=230.47 Aligned_cols=193 Identities=16% Similarity=0.189 Sum_probs=150.9
Q ss_pred ccccccccCCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc------CCeEEEE
Q 035988 64 TAVENWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR------EGIALVV 137 (692)
Q Consensus 64 ~~~~~w~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~------~~~~lvi 137 (692)
.....|. .+++++.+.+.+.+ +||..|+|+|.++++.+++++|+++.+|||+|||++|++|++.. ..++||+
T Consensus 11 ~~~~~f~-~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil 88 (220)
T 1t6n_A 11 IHSSGFR-DFLLKPELLRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVM 88 (220)
T ss_dssp ---CCST-TSCCCHHHHHHHHH-TTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEE
T ss_pred ccCCCHh-hcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEE
Confidence 3344566 68899999999986 79999999999999999999999999999999999999999865 3489999
Q ss_pred cccHHHHHHHHHHHHHc-----CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCC
Q 035988 138 SPLLSLIQDQVMCLAAL-----GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGR 212 (692)
Q Consensus 138 ~Pt~~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~ 212 (692)
+|+++|+.|+.+.++++ ++++..+.|+........ .+..+ .++|+|+||+++.. +.. .....+.+
T Consensus 89 ~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~--~~~i~v~T~~~l~~---~~~--~~~~~~~~ 158 (220)
T 1t6n_A 89 CHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKN--CPHIVVGTPGRILA---LAR--NKSLNLKH 158 (220)
T ss_dssp CSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHS--CCSEEEECHHHHHH---HHH--TTSSCCTT
T ss_pred eCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcC--CCCEEEeCHHHHHH---HHH--hCCCCccc
Confidence 99999999999999887 788888988877654332 23333 57999999998753 111 23345678
Q ss_pred ceEEEEeCccccccc-CCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhccc
Q 035988 213 LSLISIDEAHCCSQW-GHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIR 272 (692)
Q Consensus 213 l~~iVIDEaH~l~~~-g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~ 272 (692)
++++||||||++.++ + |+..+..+ +....++.++++||||++..+.+.+..++..+
T Consensus 159 ~~~lViDEah~~~~~~~--~~~~~~~i--~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p 215 (220)
T 1t6n_A 159 IKHFILDECDKMLEQLD--MRRDVQEI--FRMTPHEKQVMMFSATLSKEIRPVCRKFMQDP 215 (220)
T ss_dssp CCEEEEESHHHHHSSHH--HHHHHHHH--HHTSCSSSEEEEEESCCCTTTHHHHHTTCSSC
T ss_pred CCEEEEcCHHHHhcccC--cHHHHHHH--HHhCCCcCeEEEEEeecCHHHHHHHHHHcCCC
Confidence 999999999999864 4 66655542 23333478899999999998887776666533
No 75
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.94 E-value=4.1e-25 Score=254.89 Aligned_cols=174 Identities=18% Similarity=0.252 Sum_probs=133.0
Q ss_pred CCCEEEEecccchhhHHHHHHHhcccceEEEeccCCCCcceEEEeeccCcchHHHHHHHHHHHHhCCCCCceEEEEeccc
Q 035988 247 DVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRK 326 (692)
Q Consensus 247 ~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~ 326 (692)
..++++||||+++..... ..........+.......+.+..... ....+...+......+.++||||+|+.
T Consensus 386 ~~q~i~~SAT~~~~~~~~-----~~~~~~~~~r~~~l~~p~i~v~~~~~----~~~~Ll~~l~~~~~~~~~vlVf~~t~~ 456 (661)
T 2d7d_A 386 MHNIVYVSATPGPYEIEH-----TDEMVEQIIRPTGLLDPLIDVRPIEG----QIDDLIGEIQARIERNERVLVTTLTKK 456 (661)
T ss_dssp CSEEEEECSSCCHHHHHH-----CSSCEEECCCTTCCCCCEEEEECSTT----HHHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred CCCEEEEecCCChhHHHh-----hhCeeeeeecccCCCCCeEEEecccc----hHHHHHHHHHHHHhcCCeEEEEECCHH
Confidence 567899999998643221 00101111111111111223332222 234444555544446789999999999
Q ss_pred hHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccCCCCccEEEEeCC-----CCCHHHHHH
Q 035988 327 ECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSL-----SKSVETYYQ 401 (692)
Q Consensus 327 ~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~~-----P~s~~~y~Q 401 (692)
.++.+++.|.+.|+++..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||+++. |.|..+|+|
T Consensus 457 ~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQ 536 (661)
T 2d7d_A 457 MSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQ 536 (661)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHH
T ss_pred HHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998 999999999
Q ss_pred HHhhcCCCCCCCeeEeecCCCCHHHHHHH
Q 035988 402 ESGRAGRDGLPSECLLFFRPADVPRQSSM 430 (692)
Q Consensus 402 r~GRagR~G~~g~~i~l~~~~d~~~~~~l 430 (692)
|+||+||. ..|.|++|+++.+......+
T Consensus 537 r~GRagR~-~~G~~i~~~~~~~~~~~~~i 564 (661)
T 2d7d_A 537 TIGRAARN-AEGRVIMYADKITKSMEIAI 564 (661)
T ss_dssp HHHTTTTS-TTCEEEEECSSCCHHHHHHH
T ss_pred HhCcccCC-CCCEEEEEEeCCCHHHHHHH
Confidence 99999998 68999999998876554443
No 76
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.94 E-value=2e-26 Score=241.42 Aligned_cols=188 Identities=13% Similarity=0.156 Sum_probs=150.5
Q ss_pred ccccccCCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC--CCEEEEecCCChhHHHHHHHHHhc------CCeEEEE
Q 035988 66 VENWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSG--RDVLVIMAAGGGKSLCYQLPAVLR------EGIALVV 137 (692)
Q Consensus 66 ~~~w~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g--~dviv~apTGsGKTl~~~lpal~~------~~~~lvi 137 (692)
..+|. .+++++.+.+.|.+ +||..|+|+|.++|+.++.| +|++++||||||||++|++|++.. ++++||+
T Consensus 91 ~~~f~-~l~l~~~l~~~l~~-~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil 168 (300)
T 3fmo_B 91 VKSFE-ELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCL 168 (300)
T ss_dssp CCCSG-GGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEE
T ss_pred cCCHh-hcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEE
Confidence 44555 77899999999986 69999999999999999997 999999999999999999999854 3589999
Q ss_pred cccHHHHHHHHHHHHHc-----CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHH--hhhhc
Q 035988 138 SPLLSLIQDQVMCLAAL-----GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLE--KCHHA 210 (692)
Q Consensus 138 ~Pt~~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~--~~~~~ 210 (692)
+||++|+.|+++.++.+ ++.+....++....... ...++|+|+||++|. +.+. ....+
T Consensus 169 ~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---------~~~~~IlV~TP~~l~------~~l~~~~~~~l 233 (300)
T 3fmo_B 169 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---------KISEQIVIGTPGTVL------DWCSKLKFIDP 233 (300)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---------CCCCSEEEECHHHHH------HHHTTTCCCCG
T ss_pred cCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---------cCCCCEEEECHHHHH------HHHHhcCCCCh
Confidence 99999999999999876 46677777765533211 226899999999764 3332 23456
Q ss_pred CCceEEEEeCcccccc-cCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccce
Q 035988 211 GRLSLISIDEAHCCSQ-WGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKC 274 (692)
Q Consensus 211 ~~l~~iVIDEaH~l~~-~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~ 274 (692)
.++++|||||||++.+ +| |...+.. .+....+++++++||||++..+......++..+..
T Consensus 234 ~~l~~lVlDEad~l~~~~~--~~~~~~~--i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~ 294 (300)
T 3fmo_B 234 KKIKVFVLDEADVMIATQG--HQDQSIR--IQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNV 294 (300)
T ss_dssp GGCSEEEETTHHHHHHSTT--HHHHHHH--HHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEE
T ss_pred hhceEEEEeCHHHHhhccC--cHHHHHH--HHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeE
Confidence 7899999999999987 56 7777665 33444467899999999999998888887765443
No 77
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.92 E-value=1.9e-24 Score=205.53 Aligned_cols=147 Identities=20% Similarity=0.333 Sum_probs=129.5
Q ss_pred CCCCcceEEEeeccCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHH
Q 035988 281 INRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMR 360 (692)
Q Consensus 281 ~~r~~l~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~ 360 (692)
...+++...+.... ...+...|.+++... .++++||||++++.++.+++.|...|+.+..+||+|++.+|..+++.
T Consensus 5 ~~~~~i~~~~~~~~--~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~ 80 (163)
T 2hjv_A 5 LTTRNIEHAVIQVR--EENKFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNE 80 (163)
T ss_dssp -CCCCEEEEEEECC--GGGHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH
T ss_pred cCcccceEEEEECC--hHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHH
Confidence 34555554444433 245677888888776 67899999999999999999999999999999999999999999999
Q ss_pred HhcCCCcEEEeccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHHHHHHHH
Q 035988 361 WSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMV 431 (692)
Q Consensus 361 f~~g~~~ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~~~~l~ 431 (692)
|++|+.+|||||+++++|+|+|++++||+|++|.++.+|+||+||+||.|++|.|++|+++.|...+..+.
T Consensus 81 f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~ 151 (163)
T 2hjv_A 81 FKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIE 151 (163)
T ss_dssp HHTTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHH
T ss_pred HHcCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988876665554
No 78
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.91 E-value=4.1e-24 Score=212.24 Aligned_cols=132 Identities=24% Similarity=0.453 Sum_probs=120.6
Q ss_pred hHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEecccccc
Q 035988 298 KVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGM 377 (692)
Q Consensus 298 ~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~ 377 (692)
..+++.+.+++... .++++||||+++..++.++..|...|+.+..+||+|++++|..+++.|++|+.+|||||+++++
T Consensus 16 ~~k~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~ 93 (212)
T 3eaq_A 16 RGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAAR 93 (212)
T ss_dssp TSHHHHHHHHHHHH--CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTC
T ss_pred HHHHHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhc
Confidence 34577788888766 6889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHHHHHHHH
Q 035988 378 GINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMV 431 (692)
Q Consensus 378 GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~~~~l~ 431 (692)
|+|+|++++||++++|.|..+|+||+||+||.|++|.|++|+++.|...+..+.
T Consensus 94 Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~ 147 (212)
T 3eaq_A 94 GLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALE 147 (212)
T ss_dssp SSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHH
T ss_pred CCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998876655543
No 79
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.91 E-value=1.3e-23 Score=202.18 Aligned_cols=131 Identities=19% Similarity=0.357 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccc
Q 035988 299 VVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMG 378 (692)
Q Consensus 299 ~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~G 378 (692)
.+...|.+++... .++++||||++++.++.++..|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|
T Consensus 20 ~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~G 97 (175)
T 2rb4_A 20 DKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARG 97 (175)
T ss_dssp HHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCSCCTT
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecchhcC
Confidence 4677788877654 67899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEeCCC------CCHHHHHHHHhhcCCCCCCCeeEeecCCCCHHHHHHHH
Q 035988 379 INKPDVRFVIHHSLS------KSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMV 431 (692)
Q Consensus 379 IDip~v~~VI~~~~P------~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~~~~l~ 431 (692)
+|+|++++||+||+| .+..+|+||+||+||.|+.|.|++|+++.+...+..+.
T Consensus 98 id~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~ 156 (175)
T 2rb4_A 98 IDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQ 156 (175)
T ss_dssp TCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHH
T ss_pred CCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHH
Confidence 999999999999999 99999999999999999999999999988866655543
No 80
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.90 E-value=1.1e-23 Score=202.00 Aligned_cols=124 Identities=19% Similarity=0.283 Sum_probs=117.1
Q ss_pred hHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEecccccc
Q 035988 298 KVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGM 377 (692)
Q Consensus 298 ~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~ 377 (692)
..+...|.+++... .++++||||++++.++.++..|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++
T Consensus 16 ~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 93 (172)
T 1t5i_A 16 NEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGR 93 (172)
T ss_dssp GGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCST
T ss_pred HHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhc
Confidence 34677788888765 6789999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCC
Q 035988 378 GINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPAD 423 (692)
Q Consensus 378 GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d 423 (692)
|+|+|++++||+||+|.|+..|+||+||+||.|+.|.|++|+++.+
T Consensus 94 Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~ 139 (172)
T 1t5i_A 94 GMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 139 (172)
T ss_dssp TCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHH
T ss_pred CcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChh
Confidence 9999999999999999999999999999999999999999998753
No 81
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.90 E-value=1.3e-23 Score=204.10 Aligned_cols=147 Identities=18% Similarity=0.278 Sum_probs=114.7
Q ss_pred CCcceEEEeeccCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHh
Q 035988 283 RPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWS 362 (692)
Q Consensus 283 r~~l~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~ 362 (692)
.+++...+..... ..+...|.+++... ..++++||||++++.++.++..|...|+.+..+||+|++.+|..+++.|+
T Consensus 17 ~~~i~q~~~~v~~--~~K~~~L~~ll~~~-~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~ 93 (185)
T 2jgn_A 17 SENITQKVVWVEE--SDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 93 (185)
T ss_dssp CTTEEEEEEECCG--GGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHH
T ss_pred CCCceEEEEEeCc--HHHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHH
Confidence 3455444443322 34577788888764 26789999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEeccccccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHHHHHHHHh
Q 035988 363 KNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVF 432 (692)
Q Consensus 363 ~g~~~ILVaT~~~~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~~~~l~~ 432 (692)
+|+.+|||||+++++|+|+|++++||++|+|.|+.+|+||+||+||.|+.|.|++|+++.|......+..
T Consensus 94 ~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 163 (185)
T 2jgn_A 94 SGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLD 163 (185)
T ss_dssp HTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHH
T ss_pred cCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988776665544
No 82
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.90 E-value=1.3e-23 Score=200.22 Aligned_cols=130 Identities=18% Similarity=0.368 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEecccccccc
Q 035988 300 VIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGI 379 (692)
Q Consensus 300 ~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GI 379 (692)
+...+.+++... .++++||||++++.++.++..|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|+
T Consensus 17 K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~ 94 (165)
T 1fuk_A 17 KYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGI 94 (165)
T ss_dssp HHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTC
T ss_pred HHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCC
Confidence 567777877765 678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHHHHHHHH
Q 035988 380 NKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMV 431 (692)
Q Consensus 380 Dip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~~~~l~ 431 (692)
|+|++++||++|+|.+..+|+||+||+||.|++|.|++|+++.|...+..+.
T Consensus 95 d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~ 146 (165)
T 1fuk_A 95 DVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELE 146 (165)
T ss_dssp CCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHH
T ss_pred CcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999876665543
No 83
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.90 E-value=2e-22 Score=227.79 Aligned_cols=314 Identities=17% Similarity=0.161 Sum_probs=172.8
Q ss_pred cCCCCCCHHHHHHHHH----HHcCCCEEEEecCCChhHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHcCCCEEEEe
Q 035988 87 FGIPAYRANQQEIINA----VLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLT 162 (692)
Q Consensus 87 fg~~~~r~~Q~~ai~~----il~g~dviv~apTGsGKTl~~~lpal~~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~ 162 (692)
.|| .+||+|.+++.+ +..|+++++.||||+|||++|++|++..+++++|++||++|+.|+.+.+..+++++..+.
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~~~~~~~~~~t~~l~~q~~~~~~~l~~~~~~l~ 82 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQLKKKVLIFTRTHSQLDSIYKNAKLLGLKTGFLI 82 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHGGGTCCEEEC-
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHHhcCCcEEEec
Confidence 477 899999998655 457899999999999999999999999999999999999999999999999888877766
Q ss_pred cCCChh-------H-H---------------------HHHHHHH------------HhcCCCccEEEeChhhhhchHHHH
Q 035988 163 STTSKE-------D-E---------------------KFIYKAL------------EKGEGELKMLYVTPEKISKSKRFM 201 (692)
Q Consensus 163 ~~~~~~-------~-~---------------------~~~~~~l------------~~~~~~~~Ili~Tpe~l~~~~~~~ 201 (692)
|..... . . ...+..+ +.....++|+|+|++.+.+... .
T Consensus 83 gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~~~l~~~~~-~ 161 (540)
T 2vl7_A 83 GKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTYPYLFQKPI-R 161 (540)
T ss_dssp --------------------------------------------------------CTTGGGCSEEEEETHHHHSHHH-H
T ss_pred CCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEChHHhcCHHH-H
Confidence 532100 0 0 0001110 1112367999999999876422 1
Q ss_pred HHHHh---hhhcCCceEEEEeCcccccccCCCc----------hHHHH--------------------------------
Q 035988 202 SKLEK---CHHAGRLSLISIDEAHCCSQWGHDF----------RPDYK-------------------------------- 236 (692)
Q Consensus 202 ~~l~~---~~~~~~l~~iVIDEaH~l~~~g~~f----------r~~~~-------------------------------- 236 (692)
..+.. ...+....++||||||++.+ ..++ ...+.
T Consensus 162 ~~~~~~~~~~~~~~~~~vIiDEAHnl~~-a~~~~s~~ls~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~ 240 (540)
T 2vl7_A 162 NSVFCNKDDCLKLEDYLIVIDEAHNLLE-ADKWFTRKISRKMLERALKEIEIVERLNRIDAKKVKDYINLLIDYMSKLIK 240 (540)
T ss_dssp HHHSCSSTTSCCGGGEEEEETTGGGGGG-GGGGGCEEECHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTSCC
T ss_pred HhhCcccccccCcCCCEEEEEccccHHH-HHHHhccccCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhc
Confidence 22210 00134678999999999843 1100 00000
Q ss_pred -------------------HHHHHHh------------------------------------hCC-------------CC
Q 035988 237 -------------------NLGILKT------------------------------------QFP-------------DV 248 (692)
Q Consensus 237 -------------------~l~~l~~------------------------------------~~~-------------~~ 248 (692)
.+..+.. ..| ..
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~P~~~~~~l~~~~~~~~ 320 (540)
T 2vl7_A 241 DGRCHELSLMPLPDRETNGELIVVTRAYLNIDEGPVKKSSLKSLLKFVEMKGDLYNCNGSLVKVPSDVNQLIEDALNVKT 320 (540)
T ss_dssp SSSEEEESCCCCCCHHHHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHSCCEEEEETTEEEEECSCHHHHHHHHTCCSS
T ss_pred cccccchhhcccccHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCEEEECCeEEEehHHHHHHHHHhcCccC
Confidence 0000000 000 01
Q ss_pred CEEEEecccchhhHHHHHHHhcc-cce-EEEeccCCCCcceE--EEeeccCcchHHHHHHHHHHHHhC-CCCCceEEEEe
Q 035988 249 PMMALTATATQKVQNDLMEMLHI-RKC-IKFVSTINRPNLFY--MVREKSSVGKVVIDEIAKYIQESY-PNSESGIVYCF 323 (692)
Q Consensus 249 ~~i~lSAT~~~~~~~~i~~~l~~-~~~-~~~~~~~~r~~l~~--~v~~~~~~~~~~~~~l~~~l~~~~-~~~~~~IIf~~ 323 (692)
.+|++|||+++. +++ ... ..+...+....... .+.............+.+.+.... ...+.+|||++
T Consensus 321 ~~IltSATL~p~--------~~~~~~f~~~~~~~~g~~~~~~~~~l~s~f~~r~~~~~~~~~~l~~~~~~~~g~~lvff~ 392 (540)
T 2vl7_A 321 FKVLMSGTLPES--------LTLTNSYKIVVNESYGRGEYYYCPNVTSELRKRNSNIPIYSILLKRIYENSSKSVLVFFP 392 (540)
T ss_dssp CEEEEESSCCTT--------CCCTTEEEEECCCC-CCCEEEECTTCCCCGGGHHHHHHHHHHHHHHHHHTCSSEEEEEES
T ss_pred CeEEEcccCCCC--------cccchhcCCchhheecCCcceeccccCCCcccccCHHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 136667776651 000 000 00111111110000 000001111111133333333221 14678999999
Q ss_pred ccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEE--eccccccccCCCC----ccEEEEeCCCCC--
Q 035988 324 SRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIV--GTVAFGMGINKPD----VRFVIHHSLSKS-- 395 (692)
Q Consensus 324 s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILV--aT~~~~~GIDip~----v~~VI~~~~P~s-- 395 (692)
|...++.+++.|.. .+ ...++.. .+|..+++.|+.+. .|++ +|..+.+|||+|+ +++||.+++|..
T Consensus 393 S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~Vii~~lPf~~~ 466 (540)
T 2vl7_A 393 SYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFESLVLAGLPYPNV 466 (540)
T ss_dssp CHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEEEEEESCCCCCT
T ss_pred CHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccEEEEECCCCCCC
Confidence 99999999998864 23 4556554 46889999999865 5766 8899999999998 899999999941
Q ss_pred ----------------------------HHHHHHHHhhcCCCCCC-CeeEe
Q 035988 396 ----------------------------VETYYQESGRAGRDGLP-SECLL 417 (692)
Q Consensus 396 ----------------------------~~~y~Qr~GRagR~G~~-g~~i~ 417 (692)
+..+.|.+||+-|...+ |..++
T Consensus 467 ~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~l 517 (540)
T 2vl7_A 467 SDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYL 517 (540)
T ss_dssp TSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEE
T ss_pred CCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEE
Confidence 13456999999997555 44333
No 84
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.89 E-value=3.9e-23 Score=201.64 Aligned_cols=130 Identities=19% Similarity=0.328 Sum_probs=115.4
Q ss_pred hHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEecccccc
Q 035988 298 KVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGM 377 (692)
Q Consensus 298 ~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~ 377 (692)
..+...|.+++.. .++++||||+++..++.+++.|...|+.+..+||+|++++|..+++.|++|+.+|||||+++++
T Consensus 40 ~~K~~~L~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~ 116 (191)
T 2p6n_A 40 EAKMVYLLECLQK---TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASK 116 (191)
T ss_dssp GGHHHHHHHHHTT---SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHT
T ss_pred HHHHHHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhc
Confidence 3567778887764 3568999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCC-CHHHHHHH
Q 035988 378 GINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPA-DVPRQSSM 430 (692)
Q Consensus 378 GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~-d~~~~~~l 430 (692)
|+|+|++++||+||+|.++.+|+||+||+||.|+.|.|++|+++. +......+
T Consensus 117 Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~l 170 (191)
T 2p6n_A 117 GLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVLMDL 170 (191)
T ss_dssp TCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHHHHH
T ss_pred CCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHHHHH
Confidence 999999999999999999999999999999999999999999976 54444333
No 85
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.89 E-value=7.9e-23 Score=212.91 Aligned_cols=132 Identities=24% Similarity=0.441 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccc
Q 035988 299 VVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMG 378 (692)
Q Consensus 299 ~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~G 378 (692)
.+++.|.+++... .++++||||++++.++.++..|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|
T Consensus 14 ~K~~~L~~ll~~~--~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~G 91 (300)
T 3i32_A 14 GRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARG 91 (300)
T ss_dssp SHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCS
T ss_pred HHHHHHHHHHHhc--CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcC
Confidence 4577788888766 68999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHHHHHHHHh
Q 035988 379 INKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMVF 432 (692)
Q Consensus 379 IDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~~~~l~~ 432 (692)
+|+|++++||+|++|.+..+|+||+||+||.|++|.|++|+++.+...+..+..
T Consensus 92 idi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~ 145 (300)
T 3i32_A 92 LDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALER 145 (300)
T ss_dssp TTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHH
T ss_pred ccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999877766544
No 86
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.79 E-value=6.9e-24 Score=203.16 Aligned_cols=130 Identities=22% Similarity=0.373 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEecccccccc
Q 035988 300 VIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGI 379 (692)
Q Consensus 300 ~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GI 379 (692)
+...|.+++... .++++||||++++.++.+++.|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|+
T Consensus 17 k~~~l~~ll~~~--~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gi 94 (170)
T 2yjt_D 17 KTALLVHLLKQP--EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGI 94 (170)
Confidence 455666666653 678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCeeEeecCCCCHHHHHHHH
Q 035988 380 NKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVPRQSSMV 431 (692)
Q Consensus 380 Dip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~i~l~~~~d~~~~~~l~ 431 (692)
|+|++++||++++|.|...|+||+||+||.|+.|.|++++++.|...+..+.
T Consensus 95 d~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~ 146 (170)
T 2yjt_D 95 DIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 146 (170)
Confidence 9999999999999999999999999999999999999999988766655543
No 87
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.85 E-value=5.1e-20 Score=208.82 Aligned_cols=317 Identities=16% Similarity=0.131 Sum_probs=203.1
Q ss_pred CCCCCCHHHHHHHHHH----HcCCCEEEEecCCChhHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHc----CCCEE
Q 035988 88 GIPAYRANQQEIINAV----LSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMCLAAL----GIPAH 159 (692)
Q Consensus 88 g~~~~r~~Q~~ai~~i----l~g~dviv~apTGsGKTl~~~lpal~~~~~~lvi~Pt~~L~~q~~~~l~~~----gi~~~ 159 (692)
|| .+||+|.+++.++ ..|+++++.||||+|||++|++|++..+++++|++||++|+.|+.+.+..+ ++++.
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~~ 79 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEVKPKVLFVVRTHNEFYPIYRDLTKIREKRNITFS 79 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHHCSEEEEEESSGGGHHHHHHHHTTCCCSSCCCEE
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHHHHHHhhhcCccEE
Confidence 45 6999999977654 578999999999999999999999999999999999999999999999887 67777
Q ss_pred EEecCCCh------------------------------hHHHHHHHHH---------------HhcCCCccEEEeChhhh
Q 035988 160 MLTSTTSK------------------------------EDEKFIYKAL---------------EKGEGELKMLYVTPEKI 194 (692)
Q Consensus 160 ~~~~~~~~------------------------------~~~~~~~~~l---------------~~~~~~~~Ili~Tpe~l 194 (692)
.+.|.... .........+ ......++|||+||..|
T Consensus 80 ~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~~l 159 (551)
T 3crv_A 80 FLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTYPYF 159 (551)
T ss_dssp ECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEETHHH
T ss_pred EEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCchHh
Confidence 77652110 0000111110 11123689999999988
Q ss_pred hchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCc-------------------------------------------
Q 035988 195 SKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDF------------------------------------------- 231 (692)
Q Consensus 195 ~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~f------------------------------------------- 231 (692)
.+.. ... ..........+||||||++.+ ..++
T Consensus 160 ~~~~-~~~---~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~~ 234 (551)
T 3crv_A 160 FIDR-YRE---FIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLPDEKY 234 (551)
T ss_dssp HCHH-HHT---TSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCSCSSC
T ss_pred cCHH-HHH---hcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 7642 111 111123678899999999876 2110
Q ss_pred ----------hHHHH-------------------------HHH----HHH------------------------hhCCC-
Q 035988 232 ----------RPDYK-------------------------NLG----ILK------------------------TQFPD- 247 (692)
Q Consensus 232 ----------r~~~~-------------------------~l~----~l~------------------------~~~~~- 247 (692)
...+. .+. .+. ..+..
T Consensus 235 ~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~~~~~ 314 (551)
T 3crv_A 235 IKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNLLNDN 314 (551)
T ss_dssp EECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGGGGCT
T ss_pred cccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHHHhcc
Confidence 00000 000 000 01123
Q ss_pred -CCEEEEecccchhhHHHHHHHhcccceEE-------EeccCCCCcceEEEeeccC-----cchHHHHHHHHHHHHhC-C
Q 035988 248 -VPMMALTATATQKVQNDLMEMLHIRKCIK-------FVSTINRPNLFYMVREKSS-----VGKVVIDEIAKYIQESY-P 313 (692)
Q Consensus 248 -~~~i~lSAT~~~~~~~~i~~~l~~~~~~~-------~~~~~~r~~l~~~v~~~~~-----~~~~~~~~l~~~l~~~~-~ 313 (692)
..+|++|||+++ .+.+.+.+|++.... +.++| ..+....+..... ........+.+.+.... .
T Consensus 315 ~~svIltSaTL~~--~~~~~~~lGl~~~~~~~~~~~~~~spf-~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~~ 391 (551)
T 3crv_A 315 ELSIILMSGTLPP--REYMEKVWGIKRNMLYLDVEREIQKRV-SGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYFQ 391 (551)
T ss_dssp TCEEEEEESSCCC--HHHHHHTSCCCSCEEEEEHHHHTTSCC-SCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEeeCCCc--HHHHHHHhCCCCccccccceeecCCcC-CCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHHh
Confidence 578999999997 677888899873322 24455 4444333332111 01222334444433221 1
Q ss_pred CCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEec--cccccccCCC-----CccE
Q 035988 314 NSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGT--VAFGMGINKP-----DVRF 386 (692)
Q Consensus 314 ~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT--~~~~~GIDip-----~v~~ 386 (692)
.++.++||++|....+.+++. .+.++..-..+++. ....+.|+.+.-.||+|| ..+.+|||+| ..+.
T Consensus 392 ~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~~---~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~ 465 (551)
T 3crv_A 392 AKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSSV---EDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISD 465 (551)
T ss_dssp CSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCCH---HHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEE
T ss_pred CCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCCH---HHHHHHHHhcCCeEEEEEecceecccccccccCCcceeE
Confidence 467899999999999999873 35555544445663 456777754444799998 5999999999 3788
Q ss_pred EEEeCCCCC---------------------H---------HHHHHHHhhcCCCCCCCeeEeec
Q 035988 387 VIHHSLSKS---------------------V---------ETYYQESGRAGRDGLPSECLLFF 419 (692)
Q Consensus 387 VI~~~~P~s---------------------~---------~~y~Qr~GRagR~G~~g~~i~l~ 419 (692)
||..++|.. . ....|-+||+-|...+--+++++
T Consensus 466 viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~ll 528 (551)
T 3crv_A 466 VVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLL 528 (551)
T ss_dssp EEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEE
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEe
Confidence 999988741 1 12348889999976653344444
No 88
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.83 E-value=1.8e-20 Score=185.79 Aligned_cols=160 Identities=19% Similarity=0.201 Sum_probs=105.5
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc---------CCeEEEEcccHHHHHH-HHHHHHHc--
Q 035988 87 FGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR---------EGIALVVSPLLSLIQD-QVMCLAAL-- 154 (692)
Q Consensus 87 fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~---------~~~~lvi~Pt~~L~~q-~~~~l~~~-- 154 (692)
.+...|+|+|.++++.++.++++++.+|||+|||++|++|++.. ++++||++|+++|+.| +.+.+..+
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 34458999999999999999999999999999999999988743 5799999999999999 66666665
Q ss_pred -CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHH----hhhhcCCceEEEEeCcccccccCC
Q 035988 155 -GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLE----KCHHAGRLSLISIDEAHCCSQWGH 229 (692)
Q Consensus 155 -gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~----~~~~~~~l~~iVIDEaH~l~~~g~ 229 (692)
++++..+.|+.......... .. .++|+|+||+++.. .+.... ....+.++++|||||||++...+
T Consensus 109 ~~~~v~~~~g~~~~~~~~~~~---~~---~~~i~v~T~~~l~~---~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~- 178 (216)
T 3b6e_A 109 KWYRVIGLSGDTQLKISFPEV---VK---SCDIIISTAQILEN---SLLNLENGEDAGVQLSDFSLIIIDECHHTNKEA- 178 (216)
T ss_dssp TTSCEEECCC---CCCCHHHH---HH---HCSEEEEEHHHHHH---HHHC-------CCCGGGCSEEEETTC--------
T ss_pred cCceEEEEeCCcccchhHHhh---cc---CCCEEEECHHHHHH---HHhccCcccccccchhcccEEEEECchhhccCC-
Confidence 67787777765433211111 11 58999999998753 111110 01345688999999999997544
Q ss_pred CchHHHHHHHH--HHhh---------CCCCCEEEEecc
Q 035988 230 DFRPDYKNLGI--LKTQ---------FPDVPMMALTAT 256 (692)
Q Consensus 230 ~fr~~~~~l~~--l~~~---------~~~~~~i~lSAT 256 (692)
.+...+..+.. +... .++.++++||||
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 179 VYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred cHHHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 13332222111 1111 167889999998
No 89
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.80 E-value=3.4e-18 Score=195.61 Aligned_cols=320 Identities=15% Similarity=0.097 Sum_probs=196.5
Q ss_pred CCCHHHHHHHHH----HHcCCCEEEEecCCChhHHHHHHHHHhc----CCeEEEEcccHHHHHHHHHHHHHc----CCCE
Q 035988 91 AYRANQQEIINA----VLSGRDVLVIMAAGGGKSLCYQLPAVLR----EGIALVVSPLLSLIQDQVMCLAAL----GIPA 158 (692)
Q Consensus 91 ~~r~~Q~~ai~~----il~g~dviv~apTGsGKTl~~~lpal~~----~~~~lvi~Pt~~L~~q~~~~l~~~----gi~~ 158 (692)
.+||.|.+++.+ +.+|+++++.||||+|||++|++|++.. +.+++|++||++|+.|..+.+..+ ++++
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~~kvli~t~T~~l~~Qi~~el~~l~~~~~~~~ 82 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKELRSLSSTMKIRA 82 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHHHHHSCCCE
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHHHhhccCeEE
Confidence 589999998764 4579999999999999999999999865 789999999999999999998875 5666
Q ss_pred EEEecCCChhH------------------H-HHH------------------------HHHH------------------
Q 035988 159 HMLTSTTSKED------------------E-KFI------------------------YKAL------------------ 177 (692)
Q Consensus 159 ~~~~~~~~~~~------------------~-~~~------------------------~~~l------------------ 177 (692)
..+.|.....- . ... .+.+
T Consensus 83 ~~l~gr~~lC~~~~~~~~~~~~~~~~~~~~C~~l~~~~~~~~~~~C~~~~~~~~~gd~~~~l~~~~~die~l~~~~~~~~ 162 (620)
T 4a15_A 83 IPMQGRVNMCILYRMVDDLHEINAESLAKFCNMKKREVMAGNEAACPYFNFKIRSDETKRFLFDELPTAEEFYDYGERNN 162 (620)
T ss_dssp EECCCHHHHCSSHHHHCCCSSCCHHHHHHHHHHHHHHHHTTCTTSSTTCSGGGGCHHHHHHHHHHCCCHHHHHHHHHHTT
T ss_pred EEEECCCcccccChhhhhcccchhhhHHHHHHHHHhccccCCCCCCCcccccCcccchhHHhccCCCCHHHHHHHhhhcC
Confidence 65544311000 0 000 0000
Q ss_pred -------HhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCccccccc-----------------------
Q 035988 178 -------EKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQW----------------------- 227 (692)
Q Consensus 178 -------~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~----------------------- 227 (692)
+.....++|||+++..+.+.......+........-..+||||||++.+.
T Consensus 163 ~CPy~~aR~~~~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d~a~~~~S~~ls~~~l~~~~~~l~~ 242 (620)
T 4a15_A 163 VCPYESMKAALPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPDIGRSIGSFRISVESLNRADREAQA 242 (620)
T ss_dssp CCHHHHHHHHGGGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHHHHHHHHCEEEEHHHHHHHHHHHHH
T ss_pred CCccHHHHHHhhcCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchHHHHHHhhcceeCHHHHHHHHHHHHH
Confidence 01134789999999988764321111111111234579999999987531
Q ss_pred -CCCc----------hH--------HH----------------------------HH-------HHHHHh----------
Q 035988 228 -GHDF----------RP--------DY----------------------------KN-------LGILKT---------- 243 (692)
Q Consensus 228 -g~~f----------r~--------~~----------------------------~~-------l~~l~~---------- 243 (692)
+..+ .. .+ .. +..+..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 322 (620)
T 4a15_A 243 YGDPELSQKIHVSDLIEMIRSALQSMVSERCGKGDVRIRFQEFMEYMRIMNKRSEREIRSLLNYLYLFGEYVENEKEKVG 322 (620)
T ss_dssp TTCCEEETTEEHHHHHHHHHHHHHHHHHHHCSSSCEEECTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 1100 00 00 00 000000
Q ss_pred ------------------hC-------------------------------CCCCEEEEecccchhhHHHHHHHhccc-c
Q 035988 244 ------------------QF-------------------------------PDVPMMALTATATQKVQNDLMEMLHIR-K 273 (692)
Q Consensus 244 ------------------~~-------------------------------~~~~~i~lSAT~~~~~~~~i~~~l~~~-~ 273 (692)
.. ....+|++|||+++ .+.+.+.||+. .
T Consensus 323 ~~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~l~~~~~~~~il~SaTL~p--~~~~~~~lGl~~~ 400 (620)
T 4a15_A 323 KVPFSYCSSVASRIIAFSDQDEEKYAAILSPEDGGYMQAACLDPSGILEVLKESKTIHMSGTLDP--FDFYSDITGFEIP 400 (620)
T ss_dssp SCCCCHHHHHHHHHHHHHTSCTTTEEEEEECGGGCEEEEEECCTHHHHGGGGGSEEEEEESSCCS--HHHHHHHHCCCCC
T ss_pred cccccHHHHHHHHHHHHhhcCCCCEEEEEEeCCCcEEEEEECCHHHHHHHHhCCeEEEEccCCCc--HHHHHHHhCCCce
Confidence 00 01245889999997 67888889986 2
Q ss_pred eEEEeccCCCCcceEEEeeccC-----cchH----HHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeE
Q 035988 274 CIKFVSTINRPNLFYMVREKSS-----VGKV----VIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADY 344 (692)
Q Consensus 274 ~~~~~~~~~r~~l~~~v~~~~~-----~~~~----~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~ 344 (692)
...+.++|+..+....+..... .... ..+.+.+++.. .++.++||++|....+.+++.|+. ....
T Consensus 401 ~~~~~spf~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~---~~g~~lvlF~Sy~~l~~v~~~l~~--~~~~- 474 (620)
T 4a15_A 401 FKKIGEIFPPENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILK---VKKNTIVYFPSYSLMDRVENRVSF--EHMK- 474 (620)
T ss_dssp EEECCCCSCGGGEEEEEECCC-------CHHHHHHHHHHHHHHHHH---HCSCEEEEESCHHHHHHHTSSCCS--CCEE-
T ss_pred eeecCCCCCHHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHh---CCCCEEEEeCCHHHHHHHHHHHHh--cchh-
Confidence 2334556666665443332111 1112 22334444443 356799999999999999988862 2222
Q ss_pred eccCCCHHHHHHHHHHHhcCCCcEEEecc--ccccccCCCC--ccEEEEeCCCCC-------------------------
Q 035988 345 YHADMDINAREKVHMRWSKNKLQVIVGTV--AFGMGINKPD--VRFVIHHSLSKS------------------------- 395 (692)
Q Consensus 345 ~h~~~~~~eR~~~~~~f~~g~~~ILVaT~--~~~~GIDip~--v~~VI~~~~P~s------------------------- 395 (692)
...+++..+|..+++.|+ ++-.||++|. .|.+|||+|+ .+.||..++|..
T Consensus 475 ~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y 553 (620)
T 4a15_A 475 EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSV 553 (620)
T ss_dssp CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHT
T ss_pred ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHh
Confidence 555667778999999999 8888999985 9999999997 567999998841
Q ss_pred ----HHHHHHHHhhcCCCCCCCeeEeec
Q 035988 396 ----VETYYQESGRAGRDGLPSECLLFF 419 (692)
Q Consensus 396 ----~~~y~Qr~GRagR~G~~g~~i~l~ 419 (692)
+....|-+||+-|.-.+--+++++
T Consensus 554 ~~pa~~~l~Qa~GRlIR~~~D~G~v~ll 581 (620)
T 4a15_A 554 VYPTAIKIRQEIGRLIRSAEDTGACVIL 581 (620)
T ss_dssp HHHHHHHHHHHHHTTCCSTTCCEEEEEE
T ss_pred HHHHHHHHHHHhCccccCCCceEEEEEE
Confidence 112369999999976664444444
No 90
>2rrd_A BLM HRDC domain, HRDC domain from bloom syndrome protein; DNA helicase, RECQ family, HRDC DOMA binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=1.7e-19 Score=154.82 Aligned_cols=83 Identities=20% Similarity=0.280 Sum_probs=77.3
Q ss_pred ccccchHHHHHHHHHHHHHHHHHhCCCCceEeccHHHHHHHHHcCCCChhhcchhhhhhc--ccchhhhhhhHHHHHHHH
Q 035988 569 KRSLTSSALEFELDELRKELASISGGILPHSVLSSQLIRLISARKPSTMEEASSNHLEKI--IGKLKTGKYGSRILEVIS 646 (692)
Q Consensus 569 ~~~~~~~~l~~~l~~~r~~~a~~~~~~~~~~i~~~~~l~~~~~~~p~~~~~~~~~~l~~i--~g~~k~~~~g~~~l~~~~ 646 (692)
+....+.+||++|+.||+++|++ .|+|||+||+|.||++||..+|.|.++ |..| ||+.|+++||++||++|+
T Consensus 16 ~~~e~~~~l~~~L~~wR~~~A~~-~~vP~~~If~D~tL~eiA~~~P~t~~e-----L~~I~Gvg~~k~~~yG~~~L~~I~ 89 (101)
T 2rrd_A 16 QREEMVKKCLGELTEVCKSLGKV-FGVHYFNIFNTVTLKKLAESLSSDPEV-----LLQIDGVTEDKLEKYGAEVISVLQ 89 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-TTCCHHHHCCHHHHHHHHHHCCCCHHH-----HHTSTTCCHHHHHHTHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHH-cCCCCCeeECHHHHHHHHHhCCCCHHH-----HhhCCCCCHHHHHHHHHHHHHHHH
Confidence 34556899999999999999999 899999999999999999999999999 9999 999999999999999999
Q ss_pred hhhccCCCCCC
Q 035988 647 KCGNSEQQHDN 657 (692)
Q Consensus 647 ~~~~~~~~~~~ 657 (692)
+|++++.|.+.
T Consensus 90 ~~~~e~~P~~~ 100 (101)
T 2rrd_A 90 KYSEWTSPAED 100 (101)
T ss_dssp HHHHHHSSCCC
T ss_pred HhChhhCCCcC
Confidence 99988877653
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.78 E-value=1.7e-18 Score=174.65 Aligned_cols=138 Identities=18% Similarity=0.181 Sum_probs=113.3
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHcCCC-EEEEecCCChhH
Q 035988 91 AYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMCLAALGIP-AHMLTSTTSKED 169 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~~~~~lvi~Pt~~L~~q~~~~l~~~gi~-~~~~~~~~~~~~ 169 (692)
.++++|.++++.++.++++++++|||+|||++++.++...+..++|++|+++|+.|+.+.+.++++. +..+.++...
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~~-- 170 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-- 170 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCBC--
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCCC--
Confidence 7899999999999999999999999999999999888887899999999999999999999999988 8888776532
Q ss_pred HHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCC
Q 035988 170 EKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVP 249 (692)
Q Consensus 170 ~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~ 249 (692)
..+|+|+||+.+.... ..+ ..++++|||||||++...+ | . .+...++..+
T Consensus 171 -------------~~~i~v~T~~~l~~~~---~~~-----~~~~~llIiDEaH~l~~~~--~----~---~i~~~~~~~~ 220 (237)
T 2fz4_A 171 -------------LKPLTVSTYDSAYVNA---EKL-----GNRFMLLIFDEVHHLPAES--Y----V---QIAQMSIAPF 220 (237)
T ss_dssp -------------CCSEEEEEHHHHHHTH---HHH-----TTTCSEEEEECSSCCCTTT--H----H---HHHHTCCCSE
T ss_pred -------------cCCEEEEeHHHHHhhH---HHh-----cccCCEEEEECCccCCChH--H----H---HHHHhccCCE
Confidence 5799999999875321 111 2468999999999987543 2 2 3455566778
Q ss_pred EEEEecccchh
Q 035988 250 MMALTATATQK 260 (692)
Q Consensus 250 ~i~lSAT~~~~ 260 (692)
+++||||+...
T Consensus 221 ~l~LSATp~r~ 231 (237)
T 2fz4_A 221 RLGLTATFERE 231 (237)
T ss_dssp EEEEEESCC--
T ss_pred EEEEecCCCCC
Confidence 89999999864
No 92
>2kv2_A Bloom syndrome protein; HRDC domain, disease mutation, DNA replicati binding, nucleotide-binding, nucleus, gene regulation; NMR {Homo sapiens}
Probab=99.76 E-value=4.9e-19 Score=147.75 Aligned_cols=78 Identities=21% Similarity=0.273 Sum_probs=74.0
Q ss_pred chHHHHHHHHHHHHHHHHHhCCCCceEeccHHHHHHHHHcCCCChhhcchhhhhhc--ccchhhhhhhHHHHHHHHhhhc
Q 035988 573 TSSALEFELDELRKELASISGGILPHSVLSSQLIRLISARKPSTMEEASSNHLEKI--IGKLKTGKYGSRILEVISKCGN 650 (692)
Q Consensus 573 ~~~~l~~~l~~~r~~~a~~~~~~~~~~i~~~~~l~~~~~~~p~~~~~~~~~~l~~i--~g~~k~~~~g~~~l~~~~~~~~ 650 (692)
.+..||++|+.||+++|++ .|+|||+||+|+||.+||..+|.|.++ |..| ||+.|+++||+.||++|++|+.
T Consensus 5 ~~~~l~~~L~~wR~~~A~~-~~vp~~~If~d~tL~~iA~~~P~t~~e-----L~~i~Gvg~~k~~~yG~~~l~~i~~~~~ 78 (85)
T 2kv2_A 5 MVKKCLGELTEVCKSLGKV-FGVHYFNIFNTVTLKKLAESLSSDPEV-----LLQIDGVTEDKLEKYGAEVISVLQKYSE 78 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HTSCHHHHCCHHHHHHHHHHCCSCHHH-----HHTSSSCCHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCCcceeECHHHHHHHHHhCCCCHHH-----HhhCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 3678999999999999999 899999999999999999999999999 9999 9999999999999999999998
Q ss_pred cCCCCC
Q 035988 651 SEQQHD 656 (692)
Q Consensus 651 ~~~~~~ 656 (692)
++.|.+
T Consensus 79 e~~p~~ 84 (85)
T 2kv2_A 79 WTSPAE 84 (85)
T ss_dssp HCCCCC
T ss_pred ccCCCC
Confidence 887654
No 93
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.75 E-value=3.2e-18 Score=177.49 Aligned_cols=145 Identities=16% Similarity=0.173 Sum_probs=110.3
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHh---c-CCeEEEEcccHHHHHHHHHHHHHcCC----CEEEEe
Q 035988 91 AYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVL---R-EGIALVVSPLLSLIQDQVMCLAALGI----PAHMLT 162 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~---~-~~~~lvi~Pt~~L~~q~~~~l~~~gi----~~~~~~ 162 (692)
.++|+|.++++.++.+++.++++|||+|||+++++++.. . .+++||++|+++|+.|+.+.+.+++. .+..+.
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~ 192 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIG 192 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECS
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEe
Confidence 799999999999999989999999999999999877653 2 35999999999999999999998853 455565
Q ss_pred cCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHHHH
Q 035988 163 STTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILK 242 (692)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~ 242 (692)
++..... ......+|+|+||+.+.... ...+.+++++||||||++.. +.+. .+.
T Consensus 193 ~~~~~~~---------~~~~~~~I~v~T~~~l~~~~--------~~~~~~~~~vIiDEaH~~~~------~~~~---~il 246 (282)
T 1rif_A 193 GGASKDD---------KYKNDAPVVVGTWQTVVKQP--------KEWFSQFGMMMNDECHLATG------KSIS---SII 246 (282)
T ss_dssp TTCSSTT---------CCCTTCSEEEECHHHHTTSC--------GGGGGGEEEEEEETGGGCCH------HHHH---HHT
T ss_pred CCCcchh---------hhccCCcEEEEchHHHHhhH--------HHHHhhCCEEEEECCccCCc------ccHH---HHH
Confidence 5544321 11137899999999875421 12346789999999999863 2222 333
Q ss_pred hhC-CCCCEEEEecccchhh
Q 035988 243 TQF-PDVPMMALTATATQKV 261 (692)
Q Consensus 243 ~~~-~~~~~i~lSAT~~~~~ 261 (692)
..+ +..++++||||++...
T Consensus 247 ~~~~~~~~~l~lSATp~~~~ 266 (282)
T 1rif_A 247 SGLNNCMFKFGLSGSLRDGK 266 (282)
T ss_dssp TTCTTCCEEEEECSSCCTTS
T ss_pred HHhhcCCeEEEEeCCCCCcc
Confidence 444 5788999999997653
No 94
>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans}
Probab=99.74 E-value=1.3e-18 Score=142.67 Aligned_cols=72 Identities=31% Similarity=0.530 Sum_probs=69.4
Q ss_pred chHHHHHHHHHHHHHHHHHhCCCCceEeccHHHHHHHHHcCCCChhhcchhhhhhc--ccchhhhhhhHHHHHHHHhhhc
Q 035988 573 TSSALEFELDELRKELASISGGILPHSVLSSQLIRLISARKPSTMEEASSNHLEKI--IGKLKTGKYGSRILEVISKCGN 650 (692)
Q Consensus 573 ~~~~l~~~l~~~r~~~a~~~~~~~~~~i~~~~~l~~~~~~~p~~~~~~~~~~l~~i--~g~~k~~~~g~~~l~~~~~~~~ 650 (692)
.+.+||++|++||.++|++ .|+|||+||+|++|.+||..+|.|.++ |..| ||+.|+++||++||++|++|+.
T Consensus 3 ~d~~l~~~L~~wR~~~A~~-~~vpp~~I~~d~~L~~iA~~~P~t~~e-----L~~i~Gvg~~k~~~yG~~~l~~i~~~~~ 76 (77)
T 2rhf_A 3 HNADLSEALRELRRELMKE-TGYSAFVVFTNATLEALAARQPRTLAE-----LAEVPGLGEKRIEAYGERILDAINTVLD 76 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHH-HCCCHHHHCCHHHHHHHHHHCCCSHHH-----HTTSTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH-cCCCcceeeCHHHHHHHHHhCCCCHHH-----HhhCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 4789999999999999999 899999999999999999999999999 9999 9999999999999999999864
No 95
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.74 E-value=1.3e-17 Score=168.20 Aligned_cols=155 Identities=19% Similarity=0.153 Sum_probs=111.8
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHhc--------CCeEEEEcccHHHHHHHHHHHHHc-----CCC
Q 035988 91 AYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLR--------EGIALVVSPLLSLIQDQVMCLAAL-----GIP 157 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal~~--------~~~~lvi~Pt~~L~~q~~~~l~~~-----gi~ 157 (692)
.++++|.++++.+..|+++++.||||||||.++.++++.. ...++++.|+++|+.|+.+.+... |..
T Consensus 61 p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~ 140 (235)
T 3llm_A 61 PVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKS 140 (235)
T ss_dssp GGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSS
T ss_pred ChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCce
Confidence 5789999999999999999999999999999887776532 238999999999999999888753 223
Q ss_pred EEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccc-cccCCCchHHHH
Q 035988 158 AHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCC-SQWGHDFRPDYK 236 (692)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l-~~~g~~fr~~~~ 236 (692)
+..-..... ......++|+|+||+++.. .+.. .+.+++++||||||.+ .+.+ |.. .
T Consensus 141 ~g~~~~~~~-----------~~~~~~~~Ivv~Tpg~l~~------~l~~--~l~~~~~lVlDEah~~~~~~~--~~~--~ 197 (235)
T 3llm_A 141 CGYSVRFES-----------ILPRPHASIMFCTVGVLLR------KLEA--GIRGISHVIVDEIHERDINTD--FLL--V 197 (235)
T ss_dssp EEEEETTEE-----------ECCCSSSEEEEEEHHHHHH------HHHH--CCTTCCEEEECCTTSCCHHHH--HHH--H
T ss_pred EEEeechhh-----------ccCCCCCeEEEECHHHHHH------HHHh--hhcCCcEEEEECCccCCcchH--HHH--H
Confidence 322111100 0001268899999997753 2222 3678999999999985 3333 332 2
Q ss_pred HHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcc
Q 035988 237 NLGILKTQFPDVPMMALTATATQKVQNDLMEMLHI 271 (692)
Q Consensus 237 ~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~ 271 (692)
.+..+....++.++++||||++... +.++++.
T Consensus 198 ~l~~i~~~~~~~~~il~SAT~~~~~---~~~~~~~ 229 (235)
T 3llm_A 198 VLRDVVQAYPEVRIVLMSATIDTSM---FCEYFFN 229 (235)
T ss_dssp HHHHHHHHCTTSEEEEEECSSCCHH---HHHHTTS
T ss_pred HHHHHHhhCCCCeEEEEecCCCHHH---HHHHcCC
Confidence 3446666778999999999999765 5566653
No 96
>2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A
Probab=99.73 E-value=2.6e-18 Score=147.81 Aligned_cols=80 Identities=20% Similarity=0.273 Sum_probs=74.5
Q ss_pred cchHHHHHHHHHHHHHHHHHhCCCCceEeccHHHHHHHHHcCCCChhhcchhhhhhc--ccchhhhhhhHHHHHHHHhhh
Q 035988 572 LTSSALEFELDELRKELASISGGILPHSVLSSQLIRLISARKPSTMEEASSNHLEKI--IGKLKTGKYGSRILEVISKCG 649 (692)
Q Consensus 572 ~~~~~l~~~l~~~r~~~a~~~~~~~~~~i~~~~~l~~~~~~~p~~~~~~~~~~l~~i--~g~~k~~~~g~~~l~~~~~~~ 649 (692)
..+.+||++|+.||+++|++ .|+|||+||+|.||++||.++|.|.++ |..| ||+.|+++| ++||++|++|+
T Consensus 12 ~~d~~l~~~L~~wR~~~A~~-~~vP~y~If~D~tL~emA~~~P~t~~e-----L~~I~Gvg~~K~~~y-~~~L~~I~~~~ 84 (103)
T 2e1f_A 12 ETQIVLYGKLVEARQKHANK-MDVPPAILATNKILVDMAKMRPTTVEN-----VKRIDGVSEGKAAML-APLLEVIKHFC 84 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HTSCHHHHCCHHHHHHHHHHCCCSHHH-----HTTSTTCCHHHHHHT-HHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHH-cCCCCCeeECHHHHHHHHHhCCCCHHH-----HhcCCCCCHHHHHHH-HHHHHHHHHHH
Confidence 45889999999999999999 899999999999999999999999999 9999 999999999 99999999999
Q ss_pred ccCCCCCCc
Q 035988 650 NSEQQHDNN 658 (692)
Q Consensus 650 ~~~~~~~~~ 658 (692)
+++....+.
T Consensus 85 ~~~~i~~~~ 93 (103)
T 2e1f_A 85 QTNSVQTDL 93 (103)
T ss_dssp HHTTCCCCC
T ss_pred HhcCCCcCC
Confidence 877655443
No 97
>1wud_A ATP-dependent DNA helicase RECQ; DNA-binding domain, HRDC, hydrolase; 2.20A {Escherichia coli} SCOP: a.60.8.1
Probab=99.73 E-value=2.9e-18 Score=144.31 Aligned_cols=75 Identities=20% Similarity=0.337 Sum_probs=71.1
Q ss_pred chHHHHHHHHHHHHHHHHHhCCCCceEeccHHHHHHHHHcCCCChhhcchhhhhhc--ccchhhhhhhHHHHHHHHhhhc
Q 035988 573 TSSALEFELDELRKELASISGGILPHSVLSSQLIRLISARKPSTMEEASSNHLEKI--IGKLKTGKYGSRILEVISKCGN 650 (692)
Q Consensus 573 ~~~~l~~~l~~~r~~~a~~~~~~~~~~i~~~~~l~~~~~~~p~~~~~~~~~~l~~i--~g~~k~~~~g~~~l~~~~~~~~ 650 (692)
.+.+||++|+.||.++|++ .|+|||+||+|++|.+||..+|.|.++ |..| ||+.|+++||+.||++|++|++
T Consensus 11 ~~~~l~~~L~~wR~~~A~~-~~vpp~~If~D~tL~eiA~~~P~t~~e-----L~~i~Gvg~~k~~~yG~~~l~~I~~~~~ 84 (89)
T 1wud_A 11 YDRKLFAKLRKLRKSIADE-SNVPPYVVFNDATLIEMAEQMPITASE-----MLSVNGVGMRKLERFGKPFMALIRAHVD 84 (89)
T ss_dssp CCHHHHHHHHHHHHHHHHH-HTSCHHHHCCHHHHHHHHHHCCCSHHH-----HHTSTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCCcceeeCHHHHHHHHHhCCCCHHH-----HhhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999 899999999999999999999999999 9999 9999999999999999999987
Q ss_pred cCC
Q 035988 651 SEQ 653 (692)
Q Consensus 651 ~~~ 653 (692)
++.
T Consensus 85 e~~ 87 (89)
T 1wud_A 85 GDD 87 (89)
T ss_dssp TC-
T ss_pred hcC
Confidence 654
No 98
>2dgz_A Werner syndrome protein variant; HRDC domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.60.8.1
Probab=99.72 E-value=6.8e-18 Score=147.40 Aligned_cols=80 Identities=19% Similarity=0.253 Sum_probs=74.0
Q ss_pred cchHHHHHHHHHHHHHHHHHhCCCCceEeccHHHHHHHHHcCCCChhhcchhhhhhc--ccchhhhhhhHHHHHHHHhhh
Q 035988 572 LTSSALEFELDELRKELASISGGILPHSVLSSQLIRLISARKPSTMEEASSNHLEKI--IGKLKTGKYGSRILEVISKCG 649 (692)
Q Consensus 572 ~~~~~l~~~l~~~r~~~a~~~~~~~~~~i~~~~~l~~~~~~~p~~~~~~~~~~l~~i--~g~~k~~~~g~~~l~~~~~~~ 649 (692)
..+.+||++|+.||+++|++ .|+|||+||+|+||++||.++|.|.++ |..| ||+.|+++| ++||++|++|+
T Consensus 19 ~~d~~l~~~L~~wR~~~A~~-~~vP~y~If~D~tL~emA~~~P~t~~e-----L~~I~Gvg~~K~~~y-~~~L~~I~~~~ 91 (113)
T 2dgz_A 19 ETQIVLYGKLVEARQKHANK-MDVPPAILATNKILVDMAKMRPTTVEN-----VKRIDGVSEGKAAML-APLWEVIKHFC 91 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TTCCHHHHCCHHHHHHHHHHCCCSHHH-----HHHSSSCCTTGGGGG-HHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHH-hCCCCCeeECHHHHHHHHHhCCCCHHH-----HHhCCCCCHHHHHHH-HHHHHHHHHHH
Confidence 45789999999999999999 899999999999999999999999999 9999 999999999 99999999999
Q ss_pred ccCCCCCCc
Q 035988 650 NSEQQHDNN 658 (692)
Q Consensus 650 ~~~~~~~~~ 658 (692)
+++....+.
T Consensus 92 ~~~~~~~~~ 100 (113)
T 2dgz_A 92 QTNSVQTDL 100 (113)
T ss_dssp HTTTCCCCC
T ss_pred HhcCCCCCC
Confidence 777644443
No 99
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.69 E-value=3.1e-17 Score=168.53 Aligned_cols=125 Identities=13% Similarity=0.169 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHC-CCceeEeccCCCHHHHHHHHHHHhcC-CCc-EEEecccc
Q 035988 299 VVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQR-GISADYYHADMDINAREKVHMRWSKN-KLQ-VIVGTVAF 375 (692)
Q Consensus 299 ~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~-g~~v~~~h~~~~~~eR~~~~~~f~~g-~~~-ILVaT~~~ 375 (692)
.++..+.+++......+.++||||++...++.+...|... |+.+..+||+++.++|..+++.|+++ +.+ +|++|.++
T Consensus 96 ~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~ 175 (271)
T 1z5z_A 96 GKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAG 175 (271)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTT
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhh
Confidence 4566666666655446889999999999999999999885 99999999999999999999999998 677 78999999
Q ss_pred ccccCCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCCee--EeecCCCC
Q 035988 376 GMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSEC--LLFFRPAD 423 (692)
Q Consensus 376 ~~GIDip~v~~VI~~~~P~s~~~y~Qr~GRagR~G~~g~~--i~l~~~~d 423 (692)
++|+|++++++||+||+|+++..|.|++||++|.|+.+.+ +.|++.+.
T Consensus 176 g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~T 225 (271)
T 1z5z_A 176 GFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGT 225 (271)
T ss_dssp CCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTS
T ss_pred cCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCC
Confidence 9999999999999999999999999999999999998765 44555543
No 100
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=99.10 E-value=7.7e-11 Score=126.61 Aligned_cols=96 Identities=15% Similarity=0.116 Sum_probs=78.5
Q ss_pred chHHHHHHHHHHHHHHHHHhCCCCceEeccHHHHHHHHHcCCCChhhcchhhhhhc-ccchhhhhhhHHHHHHHHhhhc-
Q 035988 573 TSSALEFELDELRKELASISGGILPHSVLSSQLIRLISARKPSTMEEASSNHLEKI-IGKLKTGKYGSRILEVISKCGN- 650 (692)
Q Consensus 573 ~~~~l~~~l~~~r~~~a~~~~~~~~~~i~~~~~l~~~~~~~p~~~~~~~~~~l~~i-~g~~k~~~~g~~~l~~~~~~~~- 650 (692)
.+.++|++|+.||.++|++ .++|||+||+|++|.+||..+|+|.++ |..| +|+.|+++||++||++|+++.+
T Consensus 212 ~~~~~~~~L~~wR~~~A~~-~d~p~~~V~~d~~L~~iA~~~P~~~~~-----l~~ig~~~~~~~~~g~~~l~~i~~~~~~ 285 (375)
T 1yt3_A 212 RQLACLQLLADWRLRKARE-RDLAVNFVVREEHLWSVARYMPGSLGE-----LDSLGLSGSEIRFHGKTLLALVEKAQTL 285 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HTCCGGGTSCHHHHHHHHHHCCCSHHH-----HHHTTCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHH-hCCCcceEECHHHHHHHHHHCCCCHHH-----HHhcCCChHHHHHHHHHHHHHHHHHHhC
Confidence 3788999999999999999 899999999999999999999999999 9999 8999999999999999998864
Q ss_pred --cCCCCCCccccccccccchhhhhhhc
Q 035988 651 --SEQQHDNNAVSKEEQGRDARASKRTK 676 (692)
Q Consensus 651 --~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (692)
++.|.... .++..+..+...|.+|
T Consensus 286 ~~~~~p~~~~--~~~~~~~~~~~~~~l~ 311 (375)
T 1yt3_A 286 PEDALPQPML--NLMDMPGYRKAFKAIK 311 (375)
T ss_dssp CGGGSCCCCC--CGGGSTTHHHHHHHHH
T ss_pred CHhhCCCCCC--CCCCChhHHHHHHHHH
Confidence 33332211 2233344555556555
No 101
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=99.10 E-value=5.1e-11 Score=128.80 Aligned_cols=73 Identities=11% Similarity=-0.052 Sum_probs=69.0
Q ss_pred cchHHHHHHHHHHHHHHHHHhCCCCceEeccHHHHHHHHHcCCCChhhcchhhhhhc--ccchhhhhhhHHHHHHHHhhh
Q 035988 572 LTSSALEFELDELRKELASISGGILPHSVLSSQLIRLISARKPSTMEEASSNHLEKI--IGKLKTGKYGSRILEVISKCG 649 (692)
Q Consensus 572 ~~~~~l~~~l~~~r~~~a~~~~~~~~~~i~~~~~l~~~~~~~p~~~~~~~~~~l~~i--~g~~k~~~~g~~~l~~~~~~~ 649 (692)
..+.++|++|+.||.++|++ .|+|||+||+|++|.+||..+|+|.++ |..| +|+.|+++||++||++|+++.
T Consensus 326 ~~~l~l~~~L~~wR~~~Ar~-~d~p~~~V~~d~~L~~iA~~~P~~~~~-----L~~i~g~~~~~~r~~g~~~l~~I~~a~ 399 (428)
T 3saf_A 326 TQQLTAFQLLFAWRDKTARR-EDESYGYVLPNHMMLKIAEELPKEPQG-----IIACCNPVPPLVRQQINEMHLLIQQAR 399 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HTCCHHHHCCHHHHHHHHHHCCSSHHH-----HHTTCSSCCHHHHHTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH-cCCCcCEEECHHHHHHHHHHCCCCHHH-----HHhccCCCHHHHHHHHHHHHHHHHHHH
Confidence 34778999999999999999 899999999999999999999999999 9999 999999999999999999875
Q ss_pred c
Q 035988 650 N 650 (692)
Q Consensus 650 ~ 650 (692)
+
T Consensus 400 ~ 400 (428)
T 3saf_A 400 E 400 (428)
T ss_dssp T
T ss_pred h
Confidence 4
No 102
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=99.06 E-value=2.2e-10 Score=125.06 Aligned_cols=144 Identities=17% Similarity=0.084 Sum_probs=100.5
Q ss_pred CccHHHHHHHHHhccc-------CCC-cccCHHHHHH--------------HHHHHHHcCccc----ccccc-CCCce-e
Q 035988 498 RLTMLQLVDKMKIKLK-------EID-SDLKREEIEQ--------------LVLQLIIDRVLV----RIGPF-SPGKK-I 549 (692)
Q Consensus 498 ~~~~~~~~~~~~~~~~-------~~~-~~~~~~~~~~--------------~i~~l~~~~~l~----~~~~~-L~g~~-~ 549 (692)
++++..+++.+.|... .++ ..++.++|.. +..+|...|++. ....+ +.... +
T Consensus 132 ~~gL~~L~~~~lg~~~~K~~~~sdw~~rpLs~~q~~YAa~Da~~Ll~L~~~L~~~L~~~g~~~l~~~e~~~l~~~~~~~~ 211 (440)
T 3cym_A 132 RFGLAAVTEHFLGLTLAKEHSAADWSYRPLPRDWRNYAALDVELLIELETKMRAELKRQGKMEWAQEEFDYALKEGLGPR 211 (440)
T ss_dssp SCSHHHHHHHHHCEECCCCCTTCCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSSSC
T ss_pred CCCHHHHHHHHhCCCcccccccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHhccccccC
Confidence 8999999999987521 112 2556667765 778888888871 00001 00000 0
Q ss_pred EEEEeecccccccccccccccccchHHHHHHHHHHHHHHHHHhCCCCceEeccHHHHHHHHHcCCCChhhcchhhhhhc-
Q 035988 550 IKLEISSVQKNTADNKKSTKRSLTSSALEFELDELRKELASISGGILPHSVLSSQLIRLISARKPSTMEEASSNHLEKI- 628 (692)
Q Consensus 550 v~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~~~a~~~~~~~~~~i~~~~~l~~~~~~~p~~~~~~~~~~l~~i- 628 (692)
. .+ +..-+..+..... ..+..+.++|++|..||.++|++ .++|||+||+|++|.+||..+|.|.++ |..|
T Consensus 212 ~-~~-~~~~~~~~~~~~l-~~~~~~l~~~~~L~~wR~~~Ar~-~d~p~~~V~~d~~L~~iA~~~P~~~~~-----l~~~~ 282 (440)
T 3cym_A 212 K-EH-LIPWMHVSHITEV-MRDRQALAIVRALWTRRDELARE-YDIAPTLLLSDSSIIEVAKRKPHNAAQ-----FRSIR 282 (440)
T ss_dssp C-CC-SSGGGCCTTGGGG-TTCHHHHHHHHHHHHHHHHHHHH-TTSCHHHHSCHHHHHHHHHHCCCSHHH-----HHTCS
T ss_pred C-Cc-hHHHHHhcccccc-CCCHHHHHHHHHHHHHHHHHHHH-hCCCccEEECHHHHHHHHHHCCCCHHH-----HHhCC
Confidence 0 00 0000000000000 01445789999999999999999 899999999999999999999999999 9999
Q ss_pred -ccchhh------------------hh-hhHHHHHHHHhhhc
Q 035988 629 -IGKLKT------------------GK-YGSRILEVISKCGN 650 (692)
Q Consensus 629 -~g~~k~------------------~~-~g~~~l~~~~~~~~ 650 (692)
+|+.+. ++ ||+.|+++|+++.+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~i~~~~~ 324 (440)
T 3cym_A 283 SINERVRIHTDSEQDKMFERYAPIQRKIKPSMWKNIIQDALA 324 (440)
T ss_dssp GGGSCCCCCCSSTHHHHHHTTHHHHTTSCHHHHHHHHHHHHT
T ss_pred CCCchheecccchhhhhhcccchhhhhhhHHHHHHHHHHHHh
Confidence 999999 98 99999999998863
No 103
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=99.04 E-value=1.4e-10 Score=125.47 Aligned_cols=71 Identities=17% Similarity=0.145 Sum_probs=68.2
Q ss_pred chHHHHHHHHHHHHHHHHHhCCCCceEeccHHHHHHHHHcCCCChhhcchhhhhhc--ccchhhhhhhHHHHHHHHhhh
Q 035988 573 TSSALEFELDELRKELASISGGILPHSVLSSQLIRLISARKPSTMEEASSNHLEKI--IGKLKTGKYGSRILEVISKCG 649 (692)
Q Consensus 573 ~~~~l~~~l~~~r~~~a~~~~~~~~~~i~~~~~l~~~~~~~p~~~~~~~~~~l~~i--~g~~k~~~~g~~~l~~~~~~~ 649 (692)
.+.++|++|+.||.++|++ .|+|||+||+|++|.+||..+|+|.++ |..| +|+.|+++||++||++|+++.
T Consensus 311 ~~~~l~~~L~~wR~~~Ar~-~d~p~~~V~~D~~L~~iA~~~P~~~~~-----L~~i~g~~~~~~~~~g~~~l~~I~~~~ 383 (410)
T 2hbj_A 311 EREVLVRELYQWRDLIARR-DDESPRFVMPNQLLAALVAYTPTDVIG-----VVSLTNGVTEHVRQNAKLLANLIRDAL 383 (410)
T ss_dssp TTHHHHHHHHHHHHHHHHH-HTCCHHHHCCHHHHHHHHHHCCCSHHH-----HHTCTTCCCHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCCCcEEECHHHHHHHHHhCCCCHHH-----HHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999 899999999999999999999999999 9999 999999999999999999884
No 104
>3aaf_A Werner syndrome ATP-dependent helicase; helix-turn-helix, winged-helix, protein-DNA complex, DNA-BIN helicase; HET: DNA; 1.90A {Homo sapiens} PDB: 2axl_A
Probab=98.30 E-value=8.3e-07 Score=80.13 Aligned_cols=61 Identities=13% Similarity=0.017 Sum_probs=55.7
Q ss_pred cchhHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhcc-------------cCCCcccCHHHHHHHHHHHHHcCcccc
Q 035988 476 VVLAGHAQCIISLLQDIQDNNQRLTMLQLVDKMKIKL-------------KEIDSDLKREEIEQLVLQLIIDRVLVR 539 (692)
Q Consensus 476 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~i~~l~~~~~l~~ 539 (692)
.|+|.+|+++++||.+ .++++++..++|+|+|+. .|.|+++++.+|+.+|++|+.+|||..
T Consensus 12 ~D~T~~AqkiLs~V~r---~~~rfG~~~iidvLrGs~~~ki~~~~~~l~tfGigk~~s~~~w~~lirqLi~~G~L~~ 85 (134)
T 3aaf_A 12 WDFGPQAFKLLSAVDI---LGEKFGIGLPILFLRGSNSQRLADQYRRHSLFGTGKDQTESWWKAFSRQLITEGFLVE 85 (134)
T ss_dssp EECHHHHHHHHHHHHH---TTTCSCTHHHHHHHTTCCCTTSCGGGGGSTTTTTTTTSCHHHHHHHHHHHHHTTSEEE
T ss_pred cCchHHHHHHHHHHHH---HcCcccccchhhhhcCCcHHHHHHHhCCCCccCCCCCCCHHHHHHHHHHHHHcCCcee
Confidence 7999999999999986 489999999999999974 278999999999999999999999954
No 105
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.29 E-value=2e-06 Score=98.02 Aligned_cols=76 Identities=14% Similarity=0.103 Sum_probs=60.7
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhH--HHHHHHHHhc-----CCeEEEEcccHHHHHHHHHH
Q 035988 78 RADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKS--LCYQLPAVLR-----EGIALVVSPLLSLIQDQVMC 150 (692)
Q Consensus 78 ~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKT--l~~~lpal~~-----~~~~lvi~Pt~~L~~q~~~~ 150 (692)
.+...|...|+-..-.+.|+++++.++.++.+++.+|+|+||| ++++++.+.. +.++++++||..++.+..+.
T Consensus 136 ~~~~~l~~~~~~~~~~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~ 215 (608)
T 1w36_D 136 LLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTES 215 (608)
T ss_dssp HHHHHHHTTCCCTTSCCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHH
Confidence 3555666656433337899999999999999999999999999 6778887752 35899999999999988776
Q ss_pred HHH
Q 035988 151 LAA 153 (692)
Q Consensus 151 l~~ 153 (692)
+..
T Consensus 216 ~~~ 218 (608)
T 1w36_D 216 LGK 218 (608)
T ss_dssp HTH
T ss_pred HHH
Confidence 654
No 106
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.92 E-value=5.4e-05 Score=87.07 Aligned_cols=71 Identities=21% Similarity=0.185 Sum_probs=58.1
Q ss_pred CCCHHHHHHHHHHHcCCC-EEEEecCCChhHHHHH--H-HHHhcCCeEEEEcccHHHHHHHHHHHHHcCCCEEEE
Q 035988 91 AYRANQQEIINAVLSGRD-VLVIMAAGGGKSLCYQ--L-PAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHML 161 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~g~d-viv~apTGsGKTl~~~--l-pal~~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~ 161 (692)
.+.+-|.+|+..++..++ .+++||+|+|||.+.. + -.+..+.++|+++||..-+.+..+++...+.++.-+
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~~~~ilRl 263 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRILRL 263 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHTTCCEEEC
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhcCCceEEe
Confidence 578999999999998776 6899999999996532 2 223457899999999999999999999888776544
No 107
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.90 E-value=6.8e-05 Score=85.79 Aligned_cols=73 Identities=19% Similarity=0.232 Sum_probs=59.5
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHH--HHHHh--cCCeEEEEcccHHHHHHHHHHHHHcCCCEEEE
Q 035988 89 IPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQ--LPAVL--REGIALVVSPLLSLIQDQVMCLAALGIPAHML 161 (692)
Q Consensus 89 ~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~--lpal~--~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~ 161 (692)
+..+++.|.+|+..++.+.-.++.||+|+|||.+.. +-.+. .+.++++++||...+.+..+.+.+.|+++.-+
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~~~~~~R~ 254 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRL 254 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTTTCCEEEC
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhcCCeEEee
Confidence 457899999999999988888999999999996532 33333 35799999999999999999998888765443
No 108
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.74 E-value=0.00085 Score=76.96 Aligned_cols=62 Identities=18% Similarity=0.228 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHH--HHHHhc-----CCeEEEEcccHHHHHHHHHHHHHc
Q 035988 91 AYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQ--LPAVLR-----EGIALVVSPLLSLIQDQVMCLAAL 154 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~--lpal~~-----~~~~lvi~Pt~~L~~q~~~~l~~~ 154 (692)
.+++-|.+|+.. .+..++|.|+.|||||.+.. +.-+.. +..+|++++|+..+.+..+++.+.
T Consensus 9 ~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 9 SLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp TCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHH
Confidence 689999999973 46789999999999997643 222222 258999999999999999998864
No 109
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.73 E-value=0.00016 Score=84.74 Aligned_cols=72 Identities=19% Similarity=0.222 Sum_probs=58.9
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHH--HHHHh--cCCeEEEEcccHHHHHHHHHHHHHcCCCEEEE
Q 035988 90 PAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQ--LPAVL--REGIALVVSPLLSLIQDQVMCLAALGIPAHML 161 (692)
Q Consensus 90 ~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~--lpal~--~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~ 161 (692)
..+++.|.+|+..++.+.-.++.||+|+|||.+.. +-.+. .+.++++++||...+.+..+.+...|+++.-+
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~g~~vvRl 430 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRL 430 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHTTTCCEEEC
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHHhCcceEee
Confidence 46789999999999988888999999999996532 33333 35799999999999999999999888775444
No 110
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.72 E-value=0.00015 Score=85.00 Aligned_cols=72 Identities=19% Similarity=0.226 Sum_probs=58.7
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHH--HHHHh--cCCeEEEEcccHHHHHHHHHHHHHcCCCEEEE
Q 035988 90 PAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQ--LPAVL--REGIALVVSPLLSLIQDQVMCLAALGIPAHML 161 (692)
Q Consensus 90 ~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~--lpal~--~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~ 161 (692)
..+++.|.+|+..++.+.-+++.||+|+|||.+.. +-.+. .+.++++++||...+.+..+++.+.|+++.-+
T Consensus 359 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~g~~ilR~ 434 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLGLKVVRL 434 (802)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHTTCCEEEC
T ss_pred ccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHhhCccEEee
Confidence 46789999999999987778999999999996532 22232 46799999999999999999999888765443
No 111
>1d8b_A SGS1 RECQ helicase; five helices, three-helical bundle flanked by two helices, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.60.8.1
Probab=97.30 E-value=0.00035 Score=55.38 Aligned_cols=56 Identities=11% Similarity=0.097 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCceEeccHHHHHHHHHcCCCChhhcchhhhhhc--ccchhhhhhh
Q 035988 577 LEFELDELRKELASISGGILPHSVLSSQLIRLISARKPSTMEEASSNHLEKI--IGKLKTGKYG 638 (692)
Q Consensus 577 l~~~l~~~r~~~a~~~~~~~~~~i~~~~~l~~~~~~~p~~~~~~~~~~l~~i--~g~~k~~~~g 638 (692)
-|++||+.|-+.+.+ .+.|--.+++|.+|+.||...|.|.+| +.++ +++...++|-
T Consensus 8 ay~~Lr~~~i~~s~~-~~p~~s~~m~d~~Lrk~A~~LP~~e~e-----F~~L~g~~~~~~~~fk 65 (81)
T 1d8b_A 8 TYERLRELSLNLGNR-MVPPVGNFMPDSILKKMAAILPMNDSA-----FATLGTVEDKYRRRFK 65 (81)
T ss_dssp HHHHHHHHHHHHHHS-SSSCCSCSSCHHHHHHHHHHCCCSHHH-----HGGGSCCCHHHHHHGG
T ss_pred HHHHHHHHHHHHhhc-cCCchhhhccHHHHHHHHHHCCCCHHH-----HHHccCCCHHHHHHHH
Confidence 599999999999998 866667788999999999999999999 9999 8888888875
No 112
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.16 E-value=0.00096 Score=73.25 Aligned_cols=65 Identities=14% Similarity=0.160 Sum_probs=48.3
Q ss_pred cCCCCCCHHHHHHHHHHHcC----C-CEEEEecCCChhHHHHH--HHHHhc-CC-eEEEEcccHHHHHHHHHHH
Q 035988 87 FGIPAYRANQQEIINAVLSG----R-DVLVIMAAGGGKSLCYQ--LPAVLR-EG-IALVVSPLLSLIQDQVMCL 151 (692)
Q Consensus 87 fg~~~~r~~Q~~ai~~il~g----~-dviv~apTGsGKTl~~~--lpal~~-~~-~~lvi~Pt~~L~~q~~~~l 151 (692)
..|..+++.|.+++..++.. + .+++.|+.|+|||.+.. +-.+.. +. .+++++||...+......+
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhh
Confidence 47789999999999987642 3 79999999999996432 222333 33 6899999988877655544
No 113
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.99 E-value=0.00086 Score=75.62 Aligned_cols=61 Identities=13% Similarity=0.027 Sum_probs=48.2
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEecCCChhHHHH--HHHHH-hcCCeEEEEcccHHHHHHHHHHH
Q 035988 91 AYRANQQEIINAVLSGRDVLVIMAAGGGKSLCY--QLPAV-LREGIALVVSPLLSLIQDQVMCL 151 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~--~lpal-~~~~~~lvi~Pt~~L~~q~~~~l 151 (692)
.+++.|.+++..++.++.+++.+|.|+|||.+. ++-.+ ..+.++++++||...+....+.+
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~ 252 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVT 252 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhh
Confidence 688999999999999999999999999999643 22222 24578999999998887665543
No 114
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.80 E-value=0.022 Score=65.47 Aligned_cols=62 Identities=15% Similarity=0.156 Sum_probs=48.9
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHH--HHHHh-----cCCeEEEEcccHHHHHHHHHHHHHc
Q 035988 91 AYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQ--LPAVL-----REGIALVVSPLLSLIQDQVMCLAAL 154 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~--lpal~-----~~~~~lvi~Pt~~L~~q~~~~l~~~ 154 (692)
.++|-|.+++.. .+..++|.|+.|||||.+.. +.-+. ....+|+|+.|+..+.+..+++...
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~ 70 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQT 70 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 478999999976 46789999999999996543 22222 2368999999999999999988764
No 115
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=96.58 E-value=0.01 Score=61.07 Aligned_cols=126 Identities=8% Similarity=-0.040 Sum_probs=87.9
Q ss_pred HHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccccccC
Q 035988 301 IDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGIN 380 (692)
Q Consensus 301 ~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~~GID 380 (692)
+..|-+++......+.+++||++..+..+-+-.+|...|+...-+.|.....+ .. -.++...+.+.|.+.+-|+|
T Consensus 111 f~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~-~k----~~~~~~~i~Lltsag~~gin 185 (328)
T 3hgt_A 111 FSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSA-AA----ANDFSCTVHLFSSEGINFTK 185 (328)
T ss_dssp HHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCCCTTT
T ss_pred HHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhh-hh----cccCCceEEEEECCCCCCcC
Confidence 33444444444447889999999999999999999999999999999855432 11 12455556666777777886
Q ss_pred -----CCCccEEEEeCCCCCHHH-HHHHHhhcCCCC----CCCeeEeecCCCCHHHHHHHH
Q 035988 381 -----KPDVRFVIHHSLSKSVET-YYQESGRAGRDG----LPSECLLFFRPADVPRQSSMV 431 (692)
Q Consensus 381 -----ip~v~~VI~~~~P~s~~~-y~Qr~GRagR~G----~~g~~i~l~~~~d~~~~~~l~ 431 (692)
....+.||.||.-+++.. .+|.+-|+.|.| ++-.++-+++.+-+......+
T Consensus 186 ~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~ 246 (328)
T 3hgt_A 186 YPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFF 246 (328)
T ss_dssp SCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHHH
T ss_pred cccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHHc
Confidence 577889999999998887 489888888873 346777778877776654443
No 116
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.33 E-value=0.038 Score=51.79 Aligned_cols=31 Identities=16% Similarity=0.279 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHH---------cCCCEEEEecCCChhHHHH
Q 035988 93 RANQQEIINAVL---------SGRDVLVIMAAGGGKSLCY 123 (692)
Q Consensus 93 r~~Q~~ai~~il---------~g~dviv~apTGsGKTl~~ 123 (692)
.+.|.+++..+. .|+.+++.+|+|+|||...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence 346777666654 3678999999999999754
No 117
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.10 E-value=0.093 Score=55.69 Aligned_cols=63 Identities=11% Similarity=0.092 Sum_probs=49.1
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHH----hc-CCeEEEEcccHHHHHHHHHHHHH
Q 035988 91 AYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAV----LR-EGIALVVSPLLSLIQDQVMCLAA 153 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal----~~-~~~~lvi~Pt~~L~~q~~~~l~~ 153 (692)
.++|+|..++..+...+-+++..+-+.|||.+...-++ .. +..+++++|+..-+....+.++.
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~ 230 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQ 230 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 68999999998876567789999999999976543332 22 35899999999988877766654
No 118
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.60 E-value=0.068 Score=55.22 Aligned_cols=18 Identities=11% Similarity=-0.049 Sum_probs=15.7
Q ss_pred CCCEEEEecCCChhHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCY 123 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~ 123 (692)
+.++++.+|+|+|||.+.
T Consensus 45 ~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLV 62 (318)
T ss_dssp CCEEEEECCCSHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999865
No 119
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=95.30 E-value=0.19 Score=56.64 Aligned_cols=64 Identities=11% Similarity=0.076 Sum_probs=49.9
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHH----hcC-CeEEEEcccHHHHHHHHHHHHHc
Q 035988 91 AYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQLPAV----LRE-GIALVVSPLLSLIQDQVMCLAAL 154 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~lpal----~~~-~~~lvi~Pt~~L~~q~~~~l~~~ 154 (692)
.++|+|..++..+-..+.+++.+|-|+|||.+...-++ ..+ ..+++++|+...+.+....++..
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~ 231 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQA 231 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHH
Confidence 58999999998875567799999999999976542222 223 48999999999998888776653
No 120
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.20 E-value=0.037 Score=59.61 Aligned_cols=44 Identities=20% Similarity=-0.001 Sum_probs=35.0
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHc
Q 035988 109 VLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMCLAAL 154 (692)
Q Consensus 109 viv~apTGsGKTl~~~lpal~~~~~~lvi~Pt~~L~~q~~~~l~~~ 154 (692)
.++.|+.|+|||....- +......+|++||++++.++.+.+.+.
T Consensus 164 ~~I~G~aGsGKTt~I~~--~~~~~~~lVlTpT~~aa~~l~~kl~~~ 207 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILS--RVNFEEDLILVPGRQAAEMIRRRANAS 207 (446)
T ss_dssp EEEEECTTSCHHHHHHH--HCCTTTCEEEESCHHHHHHHHHHHTTT
T ss_pred EEEEcCCCCCHHHHHHH--HhccCCeEEEeCCHHHHHHHHHHhhhc
Confidence 68999999999986532 223367799999999999998888654
No 121
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.77 E-value=0.061 Score=52.61 Aligned_cols=36 Identities=17% Similarity=0.045 Sum_probs=24.4
Q ss_pred CCCEEEEecCCChhHHHHHHHH---HhcCCeEEEEcccH
Q 035988 106 GRDVLVIMAAGGGKSLCYQLPA---VLREGIALVVSPLL 141 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~lpa---l~~~~~~lvi~Pt~ 141 (692)
|.-.++.+|+|+|||...+--+ ..++.+++++.|..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~ 50 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKI 50 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEecc
Confidence 5557889999999997543212 22356778877654
No 122
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=94.72 E-value=0.32 Score=44.64 Aligned_cols=77 Identities=16% Similarity=0.216 Sum_probs=63.6
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhh
Q 035988 130 REGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHH 209 (692)
Q Consensus 130 ~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~ 209 (692)
.++++||.++++.-+....+.|...|+.+..++|+.+..++......+..+ ..+|+|+| ..+. ...+
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g--~~~vlv~T-~~~~----------~Gld 100 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRG--EYRYLVAT-DVAA----------RGID 100 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT--SCSEEEEC-GGGT----------TTCC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC--CCeEEEEC-Chhh----------cCCc
Confidence 357899999999999999999999999999999999999999999988877 89999999 3332 2334
Q ss_pred cCCceEEEEe
Q 035988 210 AGRLSLISID 219 (692)
Q Consensus 210 ~~~l~~iVID 219 (692)
+..++++|.-
T Consensus 101 ~~~~~~Vi~~ 110 (163)
T 2hjv_A 101 IENISLVINY 110 (163)
T ss_dssp CSCCSEEEES
T ss_pred hhcCCEEEEe
Confidence 5567777653
No 123
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.70 E-value=0.13 Score=49.00 Aligned_cols=33 Identities=24% Similarity=0.113 Sum_probs=25.0
Q ss_pred CCCEEEEecCCChhHHHHHHH---HHhcCCeEEEEc
Q 035988 106 GRDVLVIMAAGGGKSLCYQLP---AVLREGIALVVS 138 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~lp---al~~~~~~lvi~ 138 (692)
...+++..++|.|||.+++-- ++-++.+++|+.
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQ 63 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQ 63 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 346999999999999887633 345677888874
No 124
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.67 E-value=0.12 Score=48.75 Aligned_cols=37 Identities=19% Similarity=0.182 Sum_probs=25.8
Q ss_pred cCCCEEEEecCCChhHHHHH-HHH--HhcCCeEEEEcccH
Q 035988 105 SGRDVLVIMAAGGGKSLCYQ-LPA--VLREGIALVVSPLL 141 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~~-lpa--l~~~~~~lvi~Pt~ 141 (692)
.|+-.++.+|+|+|||...+ +.. ...+.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 35667899999999998753 211 22466888888884
No 125
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=94.59 E-value=0.073 Score=60.22 Aligned_cols=114 Identities=22% Similarity=0.247 Sum_probs=72.8
Q ss_pred CCCHHHHHHHHHHHc--CCCEEEEecCCChhHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChh
Q 035988 91 AYRANQQEIINAVLS--GRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKE 168 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~--g~dviv~apTGsGKTl~~~lpal~~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~ 168 (692)
.+|.-|.+++..++. ....++.|+-|.|||.+.-+.+-.....++|.+|+.+=+.-..+...
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~~~~~vtAP~~~a~~~l~~~~~---------------- 238 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIAGRAIVTAPAKASTDVLAQFAG---------------- 238 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSSSCEEEECSSCCSCHHHHHHHG----------------
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHHhCcEEECCCHHHHHHHHHHhh----------------
Confidence 678999999999886 33478999999999966544333334567999999765543222111
Q ss_pred HHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCC
Q 035988 169 DEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDV 248 (692)
Q Consensus 169 ~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~ 248 (692)
-.|-|..|+.+. . .....+++|||||=.+.- |. +..+.. ..
T Consensus 239 ---------------~~i~~~~Pd~~~---------~---~~~~~dlliVDEAAaIp~------pl---l~~ll~---~~ 279 (671)
T 2zpa_A 239 ---------------EKFRFIAPDALL---------A---SDEQADWLVVDEAAAIPA------PL---LHQLVS---RF 279 (671)
T ss_dssp ---------------GGCCBCCHHHHH---------H---SCCCCSEEEEETGGGSCH------HH---HHHHHT---TS
T ss_pred ---------------CCeEEeCchhhh---------h---CcccCCEEEEEchhcCCH------HH---HHHHHh---hC
Confidence 124455666421 1 224689999999988641 22 223333 44
Q ss_pred CEEEEecccch
Q 035988 249 PMMALTATATQ 259 (692)
Q Consensus 249 ~~i~lSAT~~~ 259 (692)
+.++||.|...
T Consensus 280 ~~v~~~tTv~G 290 (671)
T 2zpa_A 280 PRTLLTTTVQG 290 (671)
T ss_dssp SEEEEEEEBSS
T ss_pred CeEEEEecCCc
Confidence 67899989743
No 126
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=94.40 E-value=0.18 Score=53.73 Aligned_cols=26 Identities=19% Similarity=0.483 Sum_probs=21.4
Q ss_pred HHHHHHcCCC--EEEEecCCChhHHHHH
Q 035988 99 IINAVLSGRD--VLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 99 ai~~il~g~d--viv~apTGsGKTl~~~ 124 (692)
.+..++.|.+ +|+.+.||||||.+..
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 5666778887 6889999999999764
No 127
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.37 E-value=0.094 Score=54.61 Aligned_cols=33 Identities=15% Similarity=0.232 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHH----cCC---CEEEEecCCChhHHHHH
Q 035988 92 YRANQQEIINAVL----SGR---DVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 92 ~r~~Q~~ai~~il----~g~---dviv~apTGsGKTl~~~ 124 (692)
+.|+|.+++..+. +|+ .+++.||.|+|||....
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH
Confidence 3577777765544 343 38999999999997654
No 128
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.29 E-value=0.61 Score=44.22 Aligned_cols=17 Identities=24% Similarity=0.268 Sum_probs=14.5
Q ss_pred CCEEEEecCCChhHHHH
Q 035988 107 RDVLVIMAAGGGKSLCY 123 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~ 123 (692)
..+++.||+|+|||...
T Consensus 39 ~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35999999999999754
No 129
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=93.95 E-value=0.17 Score=45.44 Aligned_cols=21 Identities=14% Similarity=0.026 Sum_probs=17.5
Q ss_pred HcCCCEEEEecCCChhHHHHH
Q 035988 104 LSGRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 104 l~g~dviv~apTGsGKTl~~~ 124 (692)
..+.++++.+|+|+|||..+.
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~ 45 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVAR 45 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHG
T ss_pred CCCCcEEEECCCCccHHHHHH
Confidence 356789999999999998653
No 130
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=93.86 E-value=0.25 Score=47.40 Aligned_cols=33 Identities=18% Similarity=0.045 Sum_probs=22.6
Q ss_pred CCCEEEEecCCChhHHHHHHHHHhcCCeEEEEc
Q 035988 106 GRDVLVIMAAGGGKSLCYQLPAVLREGIALVVS 138 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~lpal~~~~~~lvi~ 138 (692)
|.-+++.+|+|+|||.....-+...+..++++.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~ 52 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGLLSGKKVAYVD 52 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEE
Confidence 456899999999999654332224456676665
No 131
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=93.83 E-value=0.22 Score=51.35 Aligned_cols=18 Identities=22% Similarity=0.388 Sum_probs=15.5
Q ss_pred CCEEEEecCCChhHHHHH
Q 035988 107 RDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~ 124 (692)
..+++.||+|+|||....
T Consensus 38 ~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp SSEEEECSSSSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 579999999999997653
No 132
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.53 E-value=0.37 Score=44.58 Aligned_cols=18 Identities=22% Similarity=0.283 Sum_probs=15.3
Q ss_pred CCCEEEEecCCChhHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCY 123 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~ 123 (692)
++.+++.+|+|+|||...
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 356999999999999754
No 133
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.46 E-value=0.42 Score=50.19 Aligned_cols=23 Identities=9% Similarity=0.120 Sum_probs=19.7
Q ss_pred cccCHHHHHHHHHHHHHcCcccc
Q 035988 517 SDLKREEIEQLVLQLIIDRVLVR 539 (692)
Q Consensus 517 ~~~~~~~~~~~i~~l~~~~~l~~ 539 (692)
...+...+...+..|...|++..
T Consensus 316 ~~~~~~~~~~~l~~L~~~gli~~ 338 (384)
T 2qby_B 316 KPLSYRRFSDIISELDMFGIVKI 338 (384)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHHHHHhCCCEEE
Confidence 45788999999999999999853
No 134
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.45 E-value=0.12 Score=47.95 Aligned_cols=18 Identities=17% Similarity=0.274 Sum_probs=15.2
Q ss_pred CCCEEEEecCCChhHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCY 123 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~ 123 (692)
...+++.+|+|+|||...
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 456999999999999754
No 135
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=93.42 E-value=0.24 Score=45.99 Aligned_cols=75 Identities=13% Similarity=0.142 Sum_probs=62.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhc
Q 035988 131 EGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHA 210 (692)
Q Consensus 131 ~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~ 210 (692)
.+++||.++++.-+......|...|+.+..++|+.+..++..+...+..+ ..+|+|+|.- +. ...++
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g--~~~vLvaT~~-~~----------~Gid~ 100 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG--KEKVLITTNV-CA----------RGIDV 100 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT--SCSEEEECCS-CC----------TTTCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC--CCeEEEEecc-hh----------cCCCc
Confidence 57899999999999999999999999999999999999999999988877 8999999933 22 22345
Q ss_pred CCceEEEE
Q 035988 211 GRLSLISI 218 (692)
Q Consensus 211 ~~l~~iVI 218 (692)
..+++||.
T Consensus 101 ~~~~~Vi~ 108 (175)
T 2rb4_A 101 KQVTIVVN 108 (175)
T ss_dssp TTEEEEEE
T ss_pred ccCCEEEE
Confidence 56777774
No 136
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.39 E-value=0.29 Score=49.88 Aligned_cols=18 Identities=17% Similarity=0.102 Sum_probs=15.3
Q ss_pred CCEEEEecCCChhHHHHH
Q 035988 107 RDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~ 124 (692)
..+++.+|+|+|||....
T Consensus 68 ~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 469999999999998653
No 137
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=93.33 E-value=0.21 Score=57.99 Aligned_cols=80 Identities=13% Similarity=0.111 Sum_probs=68.7
Q ss_pred CCCceEEEEeccchHHHHHHHHHHC----CCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccc-cccccCCCCccEEE
Q 035988 314 NSESGIVYCFSRKECEQVAQELRQR----GISADYYHADMDINAREKVHMRWSKNKLQVIVGTVA-FGMGINKPDVRFVI 388 (692)
Q Consensus 314 ~~~~~IIf~~s~~~~e~l~~~L~~~----g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~-~~~GIDip~v~~VI 388 (692)
.+.+++|.++|+.-+.++++.+++. |+++..+||+++..+|....+.+.+|+.+|+|+|.. +...+++.++.+||
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVV 495 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVI 495 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEE
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEE
Confidence 4679999999999999888888754 789999999999999999999999999999999975 45567888999988
Q ss_pred EeCCC
Q 035988 389 HHSLS 393 (692)
Q Consensus 389 ~~~~P 393 (692)
.-..-
T Consensus 496 IDEaH 500 (780)
T 1gm5_A 496 IDEQH 500 (780)
T ss_dssp EESCC
T ss_pred ecccc
Confidence 55544
No 138
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.23 E-value=0.22 Score=51.78 Aligned_cols=146 Identities=16% Similarity=0.143 Sum_probs=69.8
Q ss_pred CCCEEEEecCCChhHHHHHHH---HHhcCCeEEEEcccHHHHHHHHHHHHH--cCCCEEE-EecCCChhHHHHHHHHHHh
Q 035988 106 GRDVLVIMAAGGGKSLCYQLP---AVLREGIALVVSPLLSLIQDQVMCLAA--LGIPAHM-LTSTTSKEDEKFIYKALEK 179 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~lp---al~~~~~~lvi~Pt~~L~~q~~~~l~~--~gi~~~~-~~~~~~~~~~~~~~~~l~~ 179 (692)
|.-+++.|++|+|||...+-- +...+..+++++.--+ ..|...++.. .++.... ..+..+..+...+......
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms-~~ql~~Rlls~~~~v~~~~l~~g~Ls~~e~~~l~~a~~~ 124 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMS-AEQLALRALSDLTSINMHDLESGRLDDDQWENLAKCFDH 124 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSC-HHHHHHHHHHHHHCCCHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCC-HHHHHHHHHHHhhCCCHHHHhcCCCCHHHHHHHHHHHHH
Confidence 555899999999999644321 2235667777764322 2333334322 1332211 1233444443332222111
Q ss_pred cCCCccEEE-eChhhhhchHHHHHHHHhhhhcC-CceEEEEeCcccccccC------CCchHHHHHHHHHHhhCCCCCEE
Q 035988 180 GEGELKMLY-VTPEKISKSKRFMSKLEKCHHAG-RLSLISIDEAHCCSQWG------HDFRPDYKNLGILKTQFPDVPMM 251 (692)
Q Consensus 180 ~~~~~~Ili-~Tpe~l~~~~~~~~~l~~~~~~~-~l~~iVIDEaH~l~~~g------~~fr~~~~~l~~l~~~~~~~~~i 251 (692)
-. ...+.| -+|.. +...+...+....... .+++||||-.+.+..-+ .......+.|..+...+ ++|++
T Consensus 125 l~-~~~l~I~d~~~~--si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK~lAkel-~vpVi 200 (338)
T 4a1f_A 125 LS-QKKLFFYDKSYV--RIEQIRLQLRKLKSQHKELGIAFIDYLQLMSGSKATKERHEQIAEISRELKTLAREL-EIPII 200 (338)
T ss_dssp HH-HSCEEEECCTTC--CHHHHHHHHHHHHHHCTTEEEEEEEEEECCCTHHHHHHCCCCHHHHHHHHHHHHHHH-TSCEE
T ss_pred Hh-cCCeEEeCCCCC--cHHHHHHHHHHHHHhcCCCCEEEEechHHhcCCCCCCChHHHHHHHHHHHHHHHHHc-CCeEE
Confidence 00 223444 34431 1123333333332233 69999999999875311 11222333344343333 67777
Q ss_pred EEecc
Q 035988 252 ALTAT 256 (692)
Q Consensus 252 ~lSAT 256 (692)
++|-.
T Consensus 201 ~lsQl 205 (338)
T 4a1f_A 201 ALVQL 205 (338)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 77643
No 139
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.18 E-value=0.42 Score=50.74 Aligned_cols=20 Identities=25% Similarity=0.479 Sum_probs=16.9
Q ss_pred CCCEEEEecCCChhHHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~l 125 (692)
.+.+++.+|+|+|||.....
T Consensus 148 ~~~vLL~GppGtGKT~la~a 167 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKA 167 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 46799999999999986644
No 140
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.07 E-value=0.57 Score=49.00 Aligned_cols=59 Identities=8% Similarity=0.142 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHhcCCCccHHHHHHHHHhcccCC-CcccCHHHHHHHHHHHHHcCccc
Q 035988 480 GHAQCIISLLQDIQDNNQRLTMLQLVDKMKIKLKEI-DSDLKREEIEQLVLQLIIDRVLV 538 (692)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~l~~~~~l~ 538 (692)
...+.++.++..+......++...+.+.++...... ....+...+...+..|...|++.
T Consensus 290 ~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~ 349 (387)
T 2v1u_A 290 LHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLGLEHVTLRRVSGIISELDMLGIVK 349 (387)
T ss_dssp HHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCeE
Confidence 344455554443333334566676665543321111 34678889999999999999984
No 141
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=93.06 E-value=0.43 Score=50.95 Aligned_cols=26 Identities=23% Similarity=0.497 Sum_probs=21.8
Q ss_pred HHHHHHHcCCC--EEEEecCCChhHHHH
Q 035988 98 EIINAVLSGRD--VLVIMAAGGGKSLCY 123 (692)
Q Consensus 98 ~ai~~il~g~d--viv~apTGsGKTl~~ 123 (692)
..+..++.|.+ +|+.+.||||||.+.
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 36677888988 688999999999976
No 142
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=93.01 E-value=0.33 Score=44.04 Aligned_cols=19 Identities=32% Similarity=0.357 Sum_probs=16.4
Q ss_pred cCCCEEEEecCCChhHHHH
Q 035988 105 SGRDVLVIMAAGGGKSLCY 123 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~ 123 (692)
.|+.+++.+|+|+|||...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5788999999999999743
No 143
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.99 E-value=0.51 Score=45.65 Aligned_cols=18 Identities=6% Similarity=0.075 Sum_probs=15.7
Q ss_pred CCCEEEEecCCChhHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCY 123 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~ 123 (692)
++.+++.+|+|+|||...
T Consensus 52 ~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567999999999999754
No 144
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.91 E-value=0.54 Score=50.93 Aligned_cols=125 Identities=10% Similarity=0.067 Sum_probs=60.1
Q ss_pred HHHHHHc----CCCEEEEecCCChhHHHHH-HHH--Hh-cCCeEEEEcccHHHHHHHHHHHH--HcCCCEEE-EecCCCh
Q 035988 99 IINAVLS----GRDVLVIMAAGGGKSLCYQ-LPA--VL-REGIALVVSPLLSLIQDQVMCLA--ALGIPAHM-LTSTTSK 167 (692)
Q Consensus 99 ai~~il~----g~dviv~apTGsGKTl~~~-lpa--l~-~~~~~lvi~Pt~~L~~q~~~~l~--~~gi~~~~-~~~~~~~ 167 (692)
.++.++. |.-+++.|++|+|||...+ +.. .. .+..+++++.--. ..|...++. ..++.... ..+..+.
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~-~~~l~~R~~~~~~~i~~~~l~~g~l~~ 267 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMP-AAQLTLRMMCSEARIDMNRVRLGQLTD 267 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSC-HHHHHHHHHHHHTTCCTTTCCGGGCCH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCC-HHHHHHHHHHHHcCCCHHHHhCCCCCH
Confidence 3555553 3458899999999995433 221 22 2456777764322 233344432 23333211 1233444
Q ss_pred hHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccc
Q 035988 168 EDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQ 226 (692)
Q Consensus 168 ~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~ 226 (692)
.+.......+..-. ...+.+..+..+. ...+...+........+++||||..+.+..
T Consensus 268 ~~~~~~~~a~~~l~-~~~l~i~d~~~~s-~~~l~~~~~~l~~~~~~~lIvID~l~~~~~ 324 (444)
T 2q6t_A 268 RDFSRLVDVASRLS-EAPIYIDDTPDLT-LMEVRARARRLVSQNQVGLIIIDYLQLMSG 324 (444)
T ss_dssp HHHHHHHHHHHHHH-TSCEEEECCTTCB-HHHHHHHHHHHHHHSCCCEEEEECGGGCBC
T ss_pred HHHHHHHHHHHHHh-cCCEEEECCCCCC-HHHHHHHHHHHHHHcCCCEEEEcChhhcCC
Confidence 44333322221111 2345544322111 112333333322234699999999999864
No 145
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=92.87 E-value=0.15 Score=59.15 Aligned_cols=62 Identities=16% Similarity=0.217 Sum_probs=48.6
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHH--HHHHhc-----CCeEEEEcccHHHHHHHHHHHHHc
Q 035988 91 AYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQ--LPAVLR-----EGIALVVSPLLSLIQDQVMCLAAL 154 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~--lpal~~-----~~~~lvi~Pt~~L~~q~~~~l~~~ 154 (692)
.++|-|++|+.. .+..++|.|+.|||||.+.. +.-+.. +..+|+|+.|+..+.++.+++...
T Consensus 11 ~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 11 HLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp TSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 689999999876 46789999999999996543 222222 358999999999999988887754
No 146
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=92.83 E-value=0.64 Score=43.97 Aligned_cols=89 Identities=15% Similarity=0.124 Sum_probs=68.3
Q ss_pred CChhHHHHHHHHHh-cCCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhh
Q 035988 116 GGGKSLCYQLPAVL-REGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKI 194 (692)
Q Consensus 116 GsGKTl~~~lpal~-~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l 194 (692)
...|.. +++-.+. .++++||.++++.-+......|+..|+.+..++|+.+..++..+...+..+ ..+|+|+|.- +
T Consensus 39 ~~~K~~-~L~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g--~~~vLvaT~~-~ 114 (191)
T 2p6n_A 39 EEAKMV-YLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREG--KKDVLVATDV-A 114 (191)
T ss_dssp GGGHHH-HHHHHHTTSCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHT--SCSEEEECHH-H
T ss_pred hHHHHH-HHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcC--CCEEEEEcCc-h
Confidence 345653 3333332 357899999999999999999999999999999999999999999988887 8899999932 2
Q ss_pred hchHHHHHHHHhhhhcCCceEEEE
Q 035988 195 SKSKRFMSKLEKCHHAGRLSLISI 218 (692)
Q Consensus 195 ~~~~~~~~~l~~~~~~~~l~~iVI 218 (692)
....++..++++|.
T Consensus 115 ----------~~Gldi~~v~~VI~ 128 (191)
T 2p6n_A 115 ----------SKGLDFPAIQHVIN 128 (191)
T ss_dssp ----------HTTCCCCCCSEEEE
T ss_pred ----------hcCCCcccCCEEEE
Confidence 22334556676665
No 147
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.81 E-value=0.54 Score=45.17 Aligned_cols=16 Identities=25% Similarity=0.140 Sum_probs=13.9
Q ss_pred CEEEEecCCChhHHHH
Q 035988 108 DVLVIMAAGGGKSLCY 123 (692)
Q Consensus 108 dviv~apTGsGKTl~~ 123 (692)
.+++.+|+|+|||...
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999754
No 148
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.72 E-value=0.62 Score=51.48 Aligned_cols=44 Identities=16% Similarity=0.195 Sum_probs=26.8
Q ss_pred CCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccc
Q 035988 211 GRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATAT 258 (692)
Q Consensus 211 ~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~ 258 (692)
....+++|||+|.+......+ ...+..+... .+.++++.+++..
T Consensus 147 ~~~~vliIDEid~l~~~~~~~---l~~L~~~l~~-~~~~iIli~~~~~ 190 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGG---VGQLAQFCRK-TSTPLILICNERN 190 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTH---HHHHHHHHHH-CSSCEEEEESCTT
T ss_pred CCCeEEEEECCCccchhhHHH---HHHHHHHHHh-cCCCEEEEEcCCC
Confidence 356799999999987532212 2223333333 4677888887754
No 149
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=92.67 E-value=0.95 Score=47.41 Aligned_cols=61 Identities=10% Similarity=0.064 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHHHh--cCCCccHHHHHHHHHhcccCC-CcccCHHHHHHHHHHHHHcCcccc
Q 035988 479 AGHAQCIISLLQDIQD--NNQRLTMLQLVDKMKIKLKEI-DSDLKREEIEQLVLQLIIDRVLVR 539 (692)
Q Consensus 479 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~l~~~~~l~~ 539 (692)
+...+.++.++..+.+ .+..++...+.+.+....... ...++...+..++..|...|++..
T Consensus 287 ~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~ 350 (389)
T 1fnn_A 287 PLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERPRVHSQLWSYLNDLREKGIVET 350 (389)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSSEE
T ss_pred CHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCeEE
Confidence 3455666666655442 222677777776554321111 235788999999999999999943
No 150
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=92.65 E-value=0.62 Score=48.54 Aligned_cols=106 Identities=12% Similarity=0.115 Sum_probs=56.3
Q ss_pred HHHHHHc-----CCCEEEEecCCChhHHHHH-HHHH--h------cCCeEEEEcccHHH-HHHHHHHHHHcCCCEEEEec
Q 035988 99 IINAVLS-----GRDVLVIMAAGGGKSLCYQ-LPAV--L------REGIALVVSPLLSL-IQDQVMCLAALGIPAHMLTS 163 (692)
Q Consensus 99 ai~~il~-----g~dviv~apTGsGKTl~~~-lpal--~------~~~~~lvi~Pt~~L-~~q~~~~l~~~gi~~~~~~~ 163 (692)
.++.++. |.-+++.+|+|+|||...+ +..- . .++.++++.--..+ ..+....+..+|+..
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~----- 184 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDH----- 184 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCH-----
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCH-----
Confidence 4666664 3558999999999996543 3221 2 25677777654432 334444555665431
Q ss_pred CCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhc--CCceEEEEeCccccc
Q 035988 164 TTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHA--GRLSLISIDEAHCCS 225 (692)
Q Consensus 164 ~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~--~~l~~iVIDEaH~l~ 225 (692)
. ...+ ++.|..+........+...+...... ..+++||||....+.
T Consensus 185 ----~---~~l~---------~l~~~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~ 232 (343)
T 1v5w_A 185 ----D---AVLD---------NVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALF 232 (343)
T ss_dssp ----H---HHHH---------TEEEEECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGH
T ss_pred ----H---HHHh---------ceeEeecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHH
Confidence 1 1111 24444332221111222222222222 579999999999875
No 151
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=92.59 E-value=0.37 Score=44.69 Aligned_cols=123 Identities=9% Similarity=0.064 Sum_probs=80.5
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhh
Q 035988 130 REGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHH 209 (692)
Q Consensus 130 ~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~ 209 (692)
.++++||.++++.-+......|...|+.+..++|+.+..++......+..+ ..+|+|+|. .+. ...+
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g--~~~vLvaT~-~~~----------~Gld 96 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDF--QRRILVATN-LFG----------RGMD 96 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT--SCSEEEESS-CCS----------TTCC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCC--CCcEEEECC-chh----------cCcc
Confidence 356899999999999999999999999999999999999999999988877 899999993 332 1223
Q ss_pred cCCceEEEEeCcccccccCCCchHHHHHHHHHHhhC-CCCCEEEEecccchhhHHHHHHHhcc
Q 035988 210 AGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQF-PDVPMMALTATATQKVQNDLMEMLHI 271 (692)
Q Consensus 210 ~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~ 271 (692)
+..+++||.=+.. |. ....+...+...+.- ++.-+++++..-.......+.+.++.
T Consensus 97 i~~~~~Vi~~d~p----~~--~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~ 153 (172)
T 1t5i_A 97 IERVNIAFNYDMP----ED--SDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEV 153 (172)
T ss_dssp GGGCSEEEESSCC----SS--HHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCC
T ss_pred hhhCCEEEEECCC----CC--HHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhc
Confidence 4456666653221 22 333334444443322 23333444433233344555555543
No 152
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=92.56 E-value=0.31 Score=44.75 Aligned_cols=76 Identities=13% Similarity=0.151 Sum_probs=62.7
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhh
Q 035988 130 REGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHH 209 (692)
Q Consensus 130 ~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~ 209 (692)
.++++||.++++.-+......|...|+.+..++|+.+..++..+...+..+ ..+|+|+|.- +. ...+
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g--~~~vlv~T~~-~~----------~G~d 95 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSG--SSRILISTDL-LA----------RGID 95 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT--SCSEEEEEGG-GT----------TTCC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcC--CCEEEEEcCh-hh----------cCCC
Confidence 357899999999999999999999999999999999999999999988877 8899999933 22 2234
Q ss_pred cCCceEEEE
Q 035988 210 AGRLSLISI 218 (692)
Q Consensus 210 ~~~l~~iVI 218 (692)
+..++++|.
T Consensus 96 ~~~~~~Vi~ 104 (165)
T 1fuk_A 96 VQQVSLVIN 104 (165)
T ss_dssp CCSCSEEEE
T ss_pred cccCCEEEE
Confidence 456677665
No 153
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=92.40 E-value=0.38 Score=48.09 Aligned_cols=19 Identities=21% Similarity=0.093 Sum_probs=15.7
Q ss_pred CCEEEEecCCChhHHHHHH
Q 035988 107 RDVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~l 125 (692)
..+++.+|+|+|||.....
T Consensus 65 ~~vLl~G~~GtGKT~la~~ 83 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAK 83 (272)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 4699999999999986543
No 154
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=92.35 E-value=0.41 Score=45.45 Aligned_cols=36 Identities=17% Similarity=0.078 Sum_probs=25.1
Q ss_pred CCCEEEEecCCChhHHHHHHHHH---hcCCeEEEEcccH
Q 035988 106 GRDVLVIMAAGGGKSLCYQLPAV---LREGIALVVSPLL 141 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~lpal---~~~~~~lvi~Pt~ 141 (692)
|+-.++.+|+|+|||...+--+. .++.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 45578999999999976542222 3467888888873
No 155
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.31 E-value=0.45 Score=47.77 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=16.6
Q ss_pred cCCCEEEEecCCChhHHHHH
Q 035988 105 SGRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~~ 124 (692)
..+.+++.+|+|+|||....
T Consensus 50 ~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHH
Confidence 35679999999999998654
No 156
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=92.25 E-value=0.56 Score=46.26 Aligned_cols=19 Identities=26% Similarity=0.434 Sum_probs=15.9
Q ss_pred CCCEEEEecCCChhHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~ 124 (692)
.+.+++.+|+|+|||....
T Consensus 39 ~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4569999999999998654
No 157
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=92.24 E-value=0.61 Score=48.05 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=16.3
Q ss_pred CCCEEEEecCCChhHHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~l 125 (692)
.+.+++.+|+|+|||.....
T Consensus 51 ~~~vLl~GppGtGKT~la~a 70 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKA 70 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHH
Confidence 35699999999999986543
No 158
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=92.20 E-value=0.39 Score=46.27 Aligned_cols=61 Identities=23% Similarity=0.309 Sum_probs=56.0
Q ss_pred hcCCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeCh
Q 035988 129 LREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTP 191 (692)
Q Consensus 129 ~~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tp 191 (692)
..++.+||.+|++.-+....+.+...|+.+..++|+.+..++..+...+..+ ..+|+|+|.
T Consensus 29 ~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g--~~~vlvaT~ 89 (212)
T 3eaq_A 29 ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQG--EVRVLVATD 89 (212)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSS--SCCEEEECT
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCC--CCeEEEecC
Confidence 3468999999999999999999999999999999999999999999998887 899999994
No 159
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=92.15 E-value=0.22 Score=54.02 Aligned_cols=18 Identities=17% Similarity=0.322 Sum_probs=15.5
Q ss_pred CEEEEecCCChhHHHHHH
Q 035988 108 DVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 108 dviv~apTGsGKTl~~~l 125 (692)
.+++.+|+|+|||.....
T Consensus 52 ~vLL~GppGtGKTtlAr~ 69 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEV 69 (447)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 599999999999986654
No 160
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.15 E-value=1.5 Score=42.56 Aligned_cols=51 Identities=18% Similarity=0.068 Sum_probs=31.6
Q ss_pred cCCCEEEEecCCChhHHHH-HHHH--HhcCCeEEEEcccHHHHHHHHHHHHHcCC
Q 035988 105 SGRDVLVIMAAGGGKSLCY-QLPA--VLREGIALVVSPLLSLIQDQVMCLAALGI 156 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~-~lpa--l~~~~~~lvi~Pt~~L~~q~~~~l~~~gi 156 (692)
.|.-+++.+|+|+|||... ++.. ...+..++++.-.. -..+..+.+..+|.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~-~~~~~~~~~~~~g~ 75 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE-HPVQVRQNMAQFGW 75 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS-CHHHHHHHHHTTTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC-CHHHHHHHHHHcCC
Confidence 3567899999999999753 3322 23456777766432 24555556655554
No 161
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=91.98 E-value=1.3 Score=42.96 Aligned_cols=20 Identities=15% Similarity=0.091 Sum_probs=16.1
Q ss_pred cCCCEEEEecCCChhHHHHH
Q 035988 105 SGRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~~ 124 (692)
.|.-+.+.+|+|+|||....
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~ 42 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICH 42 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHH
Confidence 35678999999999996554
No 162
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.93 E-value=0.41 Score=50.10 Aligned_cols=60 Identities=12% Similarity=0.138 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHh-cCCCccHHHHHHHHHhcccCC-CcccCHHHHHHHHHHHHHcCcccc
Q 035988 480 GHAQCIISLLQDIQD-NNQRLTMLQLVDKMKIKLKEI-DSDLKREEIEQLVLQLIIDRVLVR 539 (692)
Q Consensus 480 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~l~~~~~l~~ 539 (692)
...+.++.++..+.+ ....++...+.+.+..-.... ....+...+...+..|...|++.+
T Consensus 286 ~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~~gli~~ 347 (386)
T 2qby_A 286 FHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVEAVTQRRVSDIINELDMVGILTA 347 (386)
T ss_dssp HHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 344555555553322 223345655544332211111 245677889999999999999854
No 163
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=91.85 E-value=0.2 Score=61.53 Aligned_cols=61 Identities=25% Similarity=0.298 Sum_probs=49.2
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHH---HHHHhc------CCeEEEEcccHHHHHHHHHHHHH
Q 035988 91 AYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQ---LPAVLR------EGIALVVSPLLSLIQDQVMCLAA 153 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~---lpal~~------~~~~lvi~Pt~~L~~q~~~~l~~ 153 (692)
.+++-|.++|.. .+++++|.|+-|||||.+.. +-.+.. ...++++++|++.+.++.+++..
T Consensus 10 ~~t~eQ~~~i~~--~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 10 TWTDDQWNAIVS--TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp CCCHHHHHHHHC--CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHH
Confidence 689999999986 48899999999999997653 222222 24799999999999999888876
No 164
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=91.74 E-value=0.53 Score=44.55 Aligned_cols=17 Identities=18% Similarity=0.249 Sum_probs=15.1
Q ss_pred CCEEEEecCCChhHHHH
Q 035988 107 RDVLVIMAAGGGKSLCY 123 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~ 123 (692)
+.+++.+|+|+|||...
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 67999999999999754
No 165
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=91.67 E-value=0.43 Score=46.04 Aligned_cols=37 Identities=19% Similarity=0.116 Sum_probs=24.6
Q ss_pred CCCEEEEecCCChhHHHHHHHH---HhcCCeEEEEcccHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQLPA---VLREGIALVVSPLLS 142 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~lpa---l~~~~~~lvi~Pt~~ 142 (692)
|+-.++.+|.|+|||...+--+ ...+.+++++.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC
Confidence 3446789999999997654222 234678888888753
No 166
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=91.63 E-value=0.36 Score=45.40 Aligned_cols=59 Identities=15% Similarity=0.162 Sum_probs=46.7
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeC
Q 035988 130 REGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVT 190 (692)
Q Consensus 130 ~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~T 190 (692)
.+.++||.++++.-+......|+..|+.+..++|+.+..++..+...+..+ ..+|+|+|
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g--~~~vLvaT 103 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG--KSPILVAT 103 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHT--SSSEEEEE
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcC--CCeEEEEc
Confidence 357899999999999999999999999999999999988888888888877 88999999
No 167
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=91.61 E-value=0.64 Score=47.97 Aligned_cols=106 Identities=15% Similarity=0.198 Sum_probs=56.4
Q ss_pred HHHHHHc-----CCCEEEEecCCChhHHHH-HHHHH-h-c------CCeEEEEcccHHH-HHHHHHHHHHcCCCEEEEec
Q 035988 99 IINAVLS-----GRDVLVIMAAGGGKSLCY-QLPAV-L-R------EGIALVVSPLLSL-IQDQVMCLAALGIPAHMLTS 163 (692)
Q Consensus 99 ai~~il~-----g~dviv~apTGsGKTl~~-~lpal-~-~------~~~~lvi~Pt~~L-~~q~~~~l~~~gi~~~~~~~ 163 (692)
.++.++. |.-+++.+|+|+|||... ++..- . . ++.++++.--..+ ..+..+.+..+|+..
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~----- 169 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDI----- 169 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCH-----
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCH-----
Confidence 4566664 466899999999999544 33322 1 2 4577777654433 344445556665421
Q ss_pred CCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhc-CCceEEEEeCccccc
Q 035988 164 TTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHA-GRLSLISIDEAHCCS 225 (692)
Q Consensus 164 ~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~-~~l~~iVIDEaH~l~ 225 (692)
. ...+ ++.|..|........+...+...... ..+++||||+...+.
T Consensus 170 ----~---~~~~---------~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~ 216 (324)
T 2z43_A 170 ----D---NVMN---------NIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHF 216 (324)
T ss_dssp ----H---HHHH---------TEEEEECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHH
T ss_pred ----H---HHhc---------cEEEEeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHh
Confidence 1 1111 34444332211111122222222222 579999999999874
No 168
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.56 E-value=0.43 Score=51.85 Aligned_cols=125 Identities=18% Similarity=0.132 Sum_probs=60.5
Q ss_pred HHHHHHc----CCCEEEEecCCChhHHHHH-HHH-H-h-cCCeEEEEcccHHHHHHHHHHHH--HcCCCEEEE-ecCCCh
Q 035988 99 IINAVLS----GRDVLVIMAAGGGKSLCYQ-LPA-V-L-REGIALVVSPLLSLIQDQVMCLA--ALGIPAHML-TSTTSK 167 (692)
Q Consensus 99 ai~~il~----g~dviv~apTGsGKTl~~~-lpa-l-~-~~~~~lvi~Pt~~L~~q~~~~l~--~~gi~~~~~-~~~~~~ 167 (692)
.++.++. |.-+++.|++|+|||...+ +.. + . .+..+++++.-.+- .+...++. ..|+....+ .|....
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~-~~l~~r~~~~~~~~~~~~l~~g~l~~ 270 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSA-QQLVMRMLCAEGNINAQNLRTGKLTP 270 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCH-HHHHHHHHHHHHTCCHHHHHTSCCCH
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCH-HHHHHHHHHHHcCCCHHHHhcCCCCH
Confidence 4555553 4558999999999996543 222 1 2 24477777643221 33344432 234332111 223333
Q ss_pred hHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccc
Q 035988 168 EDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQ 226 (692)
Q Consensus 168 ~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~ 226 (692)
.+.......+.... ...+.+..+..+. ...+...+........+++||||+.+.+..
T Consensus 271 ~~~~~~~~a~~~l~-~~~l~i~d~~~~s-~~~i~~~~~~l~~~~~~~livID~l~~~~~ 327 (454)
T 2r6a_A 271 EDWGKLTMAMGSLS-NAGIYIDDTPSIR-VSDIRAKCRRLKQESGLGMIVIDYLQLIQG 327 (454)
T ss_dssp HHHHHHHHHHHHHH-SSCEEEECCTTCC-HHHHHHHHHHHHTTTCCCEEEEECGGGSCC
T ss_pred HHHHHHHHHHHHHh-cCCEEEECCCCCC-HHHHHHHHHHHHHHcCCCEEEEccHHHhcc
Confidence 33332222221110 2345554433221 112233333332234689999999999864
No 169
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=91.54 E-value=1.5 Score=45.99 Aligned_cols=89 Identities=18% Similarity=0.234 Sum_probs=47.4
Q ss_pred CCCEEEEecCCChhHHHHH-HHH--HhcCCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCC
Q 035988 106 GRDVLVIMAAGGGKSLCYQ-LPA--VLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEG 182 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~-lpa--l~~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (692)
|+-+++.+|+|+|||...+ +.+ ...+..++++..-.++-.. .+..+|+.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~---~a~~~g~d------------------------- 125 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPV---YARALGVN------------------------- 125 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH---HHHHTTCC-------------------------
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHH---HHHHcCCC-------------------------
Confidence 4668999999999996443 211 1234566666543222111 12333322
Q ss_pred CccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCccccc
Q 035988 183 ELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCS 225 (692)
Q Consensus 183 ~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~ 225 (692)
.-+++|..|..+. ...+.+........+++||||....+.
T Consensus 126 ~~~l~i~~~~~~e---~~l~~l~~l~~~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 126 TDELLVSQPDNGE---QALEIMELLVRSGAIDVVVVDSVAALT 165 (366)
T ss_dssp GGGCEEECCSSHH---HHHHHHHHHHTTTCCSEEEEECTTTCC
T ss_pred HHHceeecCCcHH---HHHHHHHHHHhcCCCCEEEEeChHHhc
Confidence 1234444444332 223333333233568999999999876
No 170
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=91.51 E-value=1.8 Score=46.45 Aligned_cols=52 Identities=19% Similarity=0.210 Sum_probs=28.5
Q ss_pred CCEEEEecCCChhHHHHH-HHHH--hcCCeEEEEc--ccHHHHHHHHHHHH-HcCCCE
Q 035988 107 RDVLVIMAAGGGKSLCYQ-LPAV--LREGIALVVS--PLLSLIQDQVMCLA-ALGIPA 158 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~-lpal--~~~~~~lvi~--Pt~~L~~q~~~~l~-~~gi~~ 158 (692)
+-+++++|+|+|||.+.. +... ..+.+++++. +.+.-+.++...+. ..|+++
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~ 155 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQV 155 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCce
Confidence 347888999999997543 2222 2345555544 34444444444443 345543
No 171
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=91.46 E-value=0.32 Score=51.86 Aligned_cols=79 Identities=11% Similarity=0.203 Sum_probs=66.4
Q ss_pred CCCceEEEEeccchHHHHHHHHHH---CCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccccc----cccCCCCccE
Q 035988 314 NSESGIVYCFSRKECEQVAQELRQ---RGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFG----MGINKPDVRF 386 (692)
Q Consensus 314 ~~~~~IIf~~s~~~~e~l~~~L~~---~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~~----~GIDip~v~~ 386 (692)
.+.++||.++++.-+.++++.++. .++.+..+||+.+..++....+.+..|..+|+|+|.-.- .-++..++++
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 142 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 142 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccE
Confidence 678999999999999999999998 588999999999999999999999999999999997421 1255667888
Q ss_pred EEEeCC
Q 035988 387 VIHHSL 392 (692)
Q Consensus 387 VI~~~~ 392 (692)
||.-..
T Consensus 143 iViDEa 148 (414)
T 3oiy_A 143 VFVDDV 148 (414)
T ss_dssp EEESCH
T ss_pred EEEeCh
Confidence 875443
No 172
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=91.38 E-value=0.49 Score=48.67 Aligned_cols=115 Identities=12% Similarity=0.047 Sum_probs=54.4
Q ss_pred CCCEEEEecCCChhHHHH-HHH--HHhcCCeEEEEcccHHHHHHHHHHHHHc--CCCEEEE-ecC--CChhHHHHH---H
Q 035988 106 GRDVLVIMAAGGGKSLCY-QLP--AVLREGIALVVSPLLSLIQDQVMCLAAL--GIPAHML-TST--TSKEDEKFI---Y 174 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~-~lp--al~~~~~~lvi~Pt~~L~~q~~~~l~~~--gi~~~~~-~~~--~~~~~~~~~---~ 174 (692)
|.-+++.|++|+|||... ++. +...+..+++++-- .=..|...++... ++....+ .+. .+..+...+ .
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE-~s~~~l~~R~~~~~~~i~~~~l~~~~~~l~~~~~~~l~~a~ 146 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE-MGKKENIKRLIVTAGSINAQKIKAARRDFASEDWGKLSMAI 146 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS-SCHHHHHHHHHHHHTTCCHHHHHSCHHHHCSSCHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC-CCHHHHHHHHHHHHcCCCHHHHhcCCCCCCHHHHHHHHHHH
Confidence 556899999999999543 332 22334577777643 2233444444322 3332111 111 111111111 1
Q ss_pred HHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCce--EEEEeCcccccc
Q 035988 175 KALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLS--LISIDEAHCCSQ 226 (692)
Q Consensus 175 ~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~--~iVIDEaH~l~~ 226 (692)
..+. ...+.+..+..+ +...+...+........++ +||||-.+.+..
T Consensus 147 ~~l~----~~~i~i~d~~~~-~~~~i~~~i~~l~~~~~~~~~lVVID~l~~l~~ 195 (315)
T 3bh0_A 147 GEIS----NSNINIFDKAGQ-SVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEP 195 (315)
T ss_dssp HHHH----TSCEEEECCSCC-BHHHHHHHHHHHHHTSSSCCEEEEEECGGGSBC
T ss_pred HHHh----CCCEEEECCCCC-CHHHHHHHHHHHHHhcCCCCeEEEEeCchhcCC
Confidence 1221 234554432211 1223333333333334688 999999998853
No 173
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=91.22 E-value=1.5 Score=44.62 Aligned_cols=20 Identities=30% Similarity=0.395 Sum_probs=16.7
Q ss_pred CCCEEEEecCCChhHHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~l 125 (692)
++.+++.+|+|+|||+....
T Consensus 49 ~~~vLL~Gp~GtGKT~la~a 68 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKA 68 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHH
Confidence 56799999999999986543
No 174
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=91.19 E-value=0.62 Score=48.05 Aligned_cols=18 Identities=33% Similarity=0.503 Sum_probs=15.7
Q ss_pred CCEEEEecCCChhHHHHH
Q 035988 107 RDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~ 124 (692)
+.+++.+|+|+|||+...
T Consensus 46 ~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp SEEEEESSSSSCHHHHHH
T ss_pred ceEEEECCCCccHHHHHH
Confidence 679999999999998654
No 175
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=91.08 E-value=1.1 Score=45.98 Aligned_cols=15 Identities=40% Similarity=0.519 Sum_probs=12.9
Q ss_pred CCceEEEEeCccccc
Q 035988 211 GRLSLISIDEAHCCS 225 (692)
Q Consensus 211 ~~l~~iVIDEaH~l~ 225 (692)
....+++|||+|.+.
T Consensus 104 ~~~~vliiDEi~~l~ 118 (324)
T 3u61_B 104 GRQKVIVIDEFDRSG 118 (324)
T ss_dssp SCEEEEEEESCCCGG
T ss_pred CCCeEEEEECCcccC
Confidence 367899999999975
No 176
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=91.08 E-value=1.1 Score=45.26 Aligned_cols=19 Identities=26% Similarity=0.511 Sum_probs=16.3
Q ss_pred CCCEEEEecCCChhHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~ 124 (692)
++.+++.+|+|+|||....
T Consensus 54 ~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 5679999999999998654
No 177
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=91.06 E-value=5.9 Score=42.52 Aligned_cols=52 Identities=21% Similarity=0.105 Sum_probs=29.7
Q ss_pred CCEEEEecCCChhHHHHH-HHH-Hh-cCCeEEEEc--ccHHHHHHHHHHHHH-cCCCE
Q 035988 107 RDVLVIMAAGGGKSLCYQ-LPA-VL-REGIALVVS--PLLSLIQDQVMCLAA-LGIPA 158 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~-lpa-l~-~~~~~lvi~--Pt~~L~~q~~~~l~~-~gi~~ 158 (692)
.-+++++++|+|||.+.. +.. +. .+.+++++. |.+.-+.++...+.. .|+++
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv 158 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEV 158 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEE
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcE
Confidence 347899999999997643 222 22 244555554 455555555554443 35443
No 178
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=90.75 E-value=0.8 Score=49.48 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=15.5
Q ss_pred CCEEEEecCCChhHHHHH
Q 035988 107 RDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~ 124 (692)
..+++.||+|+|||....
T Consensus 131 ~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp CCEEEECSSSSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 579999999999997654
No 179
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.34 E-value=1.8 Score=45.92 Aligned_cols=19 Identities=26% Similarity=0.426 Sum_probs=16.3
Q ss_pred CCCEEEEecCCChhHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~ 124 (692)
.+.+|+.+|+|+|||+.+-
T Consensus 182 prGvLL~GPPGTGKTllAk 200 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLAR 200 (405)
T ss_dssp CCCEEEESCSSSSHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHH
Confidence 3789999999999998653
No 180
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=90.28 E-value=0.84 Score=47.74 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=16.5
Q ss_pred CCCEEEEecCCChhHHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~l 125 (692)
.+.+++.+|+|+|||+....
T Consensus 84 ~~~iLL~GppGtGKT~la~a 103 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKA 103 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHH
Confidence 35799999999999986543
No 181
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.28 E-value=1.7 Score=44.84 Aligned_cols=17 Identities=24% Similarity=0.298 Sum_probs=14.8
Q ss_pred CCEEEEecCCChhHHHH
Q 035988 107 RDVLVIMAAGGGKSLCY 123 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~ 123 (692)
.++++.||+|+|||...
T Consensus 59 ~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 46999999999999754
No 182
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=90.21 E-value=1.3 Score=46.94 Aligned_cols=61 Identities=8% Similarity=-0.013 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHHHh-cCCCccHHHHHHHHHhcc-cCCC-cccCHHHHHHHHHHHHHcCcccc
Q 035988 479 AGHAQCIISLLQDIQD-NNQRLTMLQLVDKMKIKL-KEID-SDLKREEIEQLVLQLIIDRVLVR 539 (692)
Q Consensus 479 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~i~~l~~~~~l~~ 539 (692)
+...+.++.++..+.. ....++...+.+.+..-. ...| ..++...+...+..|...|++..
T Consensus 307 ~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~ 370 (412)
T 1w5s_A 307 SIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDA 370 (412)
T ss_dssp CHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEe
Confidence 4556667766665432 334567776665443211 1112 34678889999999999999843
No 183
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=90.07 E-value=1.1 Score=48.33 Aligned_cols=20 Identities=30% Similarity=0.366 Sum_probs=16.5
Q ss_pred CCCEEEEecCCChhHHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~l 125 (692)
.+.+++.+|+|+|||+....
T Consensus 167 ~~~vLL~GppGtGKT~lA~a 186 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKA 186 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 36799999999999986643
No 184
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=89.77 E-value=1.2 Score=45.47 Aligned_cols=75 Identities=20% Similarity=0.282 Sum_probs=63.1
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhh
Q 035988 130 REGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHH 209 (692)
Q Consensus 130 ~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~ 209 (692)
.++.+||.++++.-+......+...|+.+..++|+.+..++..+...+..+ ..+|+|+|.- +. ....
T Consensus 27 ~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g--~~~vLVaT~v-a~----------~Gid 93 (300)
T 3i32_A 27 SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQG--EVRVLVATDV-AA----------RGLD 93 (300)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHT--SCCEEEECST-TT----------CSTT
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcC--CceEEEEech-hh----------cCcc
Confidence 478999999999999999999999999999999999999999999999887 8999999943 22 2334
Q ss_pred cCCceEEE
Q 035988 210 AGRLSLIS 217 (692)
Q Consensus 210 ~~~l~~iV 217 (692)
+..+++||
T Consensus 94 i~~v~~VI 101 (300)
T 3i32_A 94 IPQVDLVV 101 (300)
T ss_dssp CCCCSEEE
T ss_pred ccceeEEE
Confidence 45677666
No 185
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=89.59 E-value=1.4 Score=45.15 Aligned_cols=106 Identities=14% Similarity=0.113 Sum_probs=55.5
Q ss_pred HHHHHHc-----CCCEEEEecCCChhHHHH-HHHHH--h------------cC----CeEEEEcccHHH-HHHHHHHHHH
Q 035988 99 IINAVLS-----GRDVLVIMAAGGGKSLCY-QLPAV--L------------RE----GIALVVSPLLSL-IQDQVMCLAA 153 (692)
Q Consensus 99 ai~~il~-----g~dviv~apTGsGKTl~~-~lpal--~------------~~----~~~lvi~Pt~~L-~~q~~~~l~~ 153 (692)
.++.++. |.-+++.+|+|+|||... ++..- . .+ +.++++.--..+ ..+..+.++.
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~ 165 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEH 165 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4555553 456899999999999543 33321 1 12 577777654433 4455555566
Q ss_pred cCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhc-CCceEEEEeCccccc
Q 035988 154 LGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHA-GRLSLISIDEAHCCS 225 (692)
Q Consensus 154 ~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~-~~l~~iVIDEaH~l~ 225 (692)
+|+.. . ...+ ++.|..|........+...+...... ..+++||||....+.
T Consensus 166 ~g~~~---------~---~~~~---------~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~ 217 (322)
T 2i1q_A 166 AGIDG---------Q---TVLD---------NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTF 217 (322)
T ss_dssp HTCCH---------H---HHHH---------TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHH
T ss_pred cCCCH---------H---HHhc---------CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHH
Confidence 65421 1 1111 24444332221111222222222222 578999999999874
No 186
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=89.21 E-value=1.5 Score=44.62 Aligned_cols=17 Identities=24% Similarity=0.249 Sum_probs=14.7
Q ss_pred CEEEEecCCChhHHHHH
Q 035988 108 DVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 108 dviv~apTGsGKTl~~~ 124 (692)
.+++.||+|+|||....
T Consensus 48 ~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred eEEEECcCCCCHHHHHH
Confidence 69999999999997653
No 187
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=89.11 E-value=1.5 Score=41.45 Aligned_cols=34 Identities=21% Similarity=0.186 Sum_probs=22.5
Q ss_pred CCCEEEEecCCChhHHHHHHHHH----hcCCeEEEEccc
Q 035988 106 GRDVLVIMAAGGGKSLCYQLPAV----LREGIALVVSPL 140 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~lpal----~~~~~~lvi~Pt 140 (692)
|+=.++.+|.|+|||.-. +-++ ..+.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~L-l~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTEL-MRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHH-HHHHHHHHHTTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHH-HHHHHHHHHcCCeEEEEccc
Confidence 566899999999999422 2122 234667777665
No 188
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=89.09 E-value=2 Score=45.36 Aligned_cols=75 Identities=12% Similarity=0.095 Sum_probs=63.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhc
Q 035988 131 EGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHA 210 (692)
Q Consensus 131 ~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~ 210 (692)
++++||.++++.-+....+.+.+.|+.+..++|+.+..++..+...+..+ ..+|+|+|.- + ....++
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g--~~~vlvaT~~-~----------~~Gidi 342 (417)
T 2i4i_A 276 DSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG--KSPILVATAV-A----------ARGLDI 342 (417)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHT--SSCEEEECHH-H----------HTTSCC
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcC--CCCEEEECCh-h----------hcCCCc
Confidence 57899999999999999999999999999999999999999999998887 8899999952 1 334455
Q ss_pred CCceEEEE
Q 035988 211 GRLSLISI 218 (692)
Q Consensus 211 ~~l~~iVI 218 (692)
..+++||.
T Consensus 343 p~v~~Vi~ 350 (417)
T 2i4i_A 343 SNVKHVIN 350 (417)
T ss_dssp CCEEEEEE
T ss_pred ccCCEEEE
Confidence 66776664
No 189
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=88.92 E-value=1.7 Score=45.25 Aligned_cols=79 Identities=11% Similarity=0.115 Sum_probs=66.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhc
Q 035988 131 EGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHA 210 (692)
Q Consensus 131 ~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~ 210 (692)
++++||.++++.-+....+.++..|+.+..++|+.+..++..+...+..+ ..+|+|+|.- + ....++
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g--~~~vlv~T~~-~----------~~Gidi 309 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREG--RSKVLITTNV-L----------ARGIDI 309 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTT--SCCEEEECGG-G----------SSSCCC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCC--CCCEEEECCh-h----------hcCCCc
Confidence 47899999999999999999999999999999999999999999999887 8899999953 2 233455
Q ss_pred CCceEEEEeCcc
Q 035988 211 GRLSLISIDEAH 222 (692)
Q Consensus 211 ~~l~~iVIDEaH 222 (692)
..+++||.-...
T Consensus 310 p~~~~Vi~~~~p 321 (395)
T 3pey_A 310 PTVSMVVNYDLP 321 (395)
T ss_dssp TTEEEEEESSCC
T ss_pred ccCCEEEEcCCC
Confidence 678888865544
No 190
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=88.79 E-value=3.5 Score=42.35 Aligned_cols=76 Identities=13% Similarity=0.161 Sum_probs=63.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhc
Q 035988 131 EGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHA 210 (692)
Q Consensus 131 ~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~ 210 (692)
+.++||.++++.-+....+.+++.|..+..++|+.+..++..+.+.+..+ ..+|+|+|.- + ....++
T Consensus 238 ~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~--~~~vlv~T~~-~----------~~Gid~ 304 (367)
T 1hv8_A 238 EFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQK--KIRILIATDV-M----------SRGIDV 304 (367)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTT--SSSEEEECTT-H----------HHHCCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcC--CCeEEEECCh-h----------hcCCCc
Confidence 46899999999999999999999999999999999999999999888877 8999999942 2 223355
Q ss_pred CCceEEEEe
Q 035988 211 GRLSLISID 219 (692)
Q Consensus 211 ~~l~~iVID 219 (692)
..++++|.-
T Consensus 305 ~~~~~Vi~~ 313 (367)
T 1hv8_A 305 NDLNCVINY 313 (367)
T ss_dssp SCCSEEEES
T ss_pred ccCCEEEEe
Confidence 667777753
No 191
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=88.77 E-value=0.84 Score=47.60 Aligned_cols=16 Identities=25% Similarity=0.177 Sum_probs=13.9
Q ss_pred EEEEecCCChhHHHHH
Q 035988 109 VLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 109 viv~apTGsGKTl~~~ 124 (692)
+++.||+|+|||....
T Consensus 41 ~ll~G~~G~GKT~la~ 56 (373)
T 1jr3_A 41 YLFSGTRGVGKTSIAR 56 (373)
T ss_dssp EEEESCTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 7999999999997653
No 192
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=88.63 E-value=1.6 Score=44.61 Aligned_cols=43 Identities=7% Similarity=0.016 Sum_probs=25.3
Q ss_pred cCCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccc
Q 035988 210 AGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATAT 258 (692)
Q Consensus 210 ~~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~ 258 (692)
.....++||||||.+... ....|......+|..-++.|.++-+
T Consensus 80 ~~~~kvviIdead~lt~~------a~naLLk~LEep~~~t~fIl~t~~~ 122 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQ------AANAFLKALEEPPEYAVIVLNTRRW 122 (305)
T ss_dssp SSSSEEEEETTGGGBCHH------HHHHTHHHHHSCCTTEEEEEEESCG
T ss_pred cCCceEEEeccHHHhCHH------HHHHHHHHHhCCCCCeEEEEEECCh
Confidence 356889999999997532 2223334455555444444554443
No 193
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=88.59 E-value=1.2 Score=45.09 Aligned_cols=18 Identities=22% Similarity=0.145 Sum_probs=14.9
Q ss_pred CCEEEEecCCChhHHHHH
Q 035988 107 RDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~ 124 (692)
+.+++.+|+|+|||....
T Consensus 37 ~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp SEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 458899999999998654
No 194
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=88.50 E-value=3.9 Score=39.02 Aligned_cols=50 Identities=12% Similarity=0.053 Sum_probs=28.1
Q ss_pred cCCCEEEEecCCChhHHHH-HHHHH--hcCCeEEEEcccHHHHHHHHHHHHHcC
Q 035988 105 SGRDVLVIMAAGGGKSLCY-QLPAV--LREGIALVVSPLLSLIQDQVMCLAALG 155 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~-~lpal--~~~~~~lvi~Pt~~L~~q~~~~l~~~g 155 (692)
.|.-+++.+|+|+|||... ++... ..++.++++.... ...+....+..++
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~ 74 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE-SRDSIIRQAKQFN 74 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS-CHHHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc-CHHHHHHHHHHhc
Confidence 3567899999999999543 33222 2355666665322 2333344444444
No 195
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=88.48 E-value=2.2 Score=44.41 Aligned_cols=34 Identities=24% Similarity=0.257 Sum_probs=22.2
Q ss_pred CCCEEEEecCCChhHHHHH-HHH--HhcCCeEEEEcc
Q 035988 106 GRDVLVIMAAGGGKSLCYQ-LPA--VLREGIALVVSP 139 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~-lpa--l~~~~~~lvi~P 139 (692)
|+-+++.+|+|+|||...+ +.. ...++.++++.-
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~ 97 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDA 97 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 5668999999999996533 321 123456666653
No 196
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=88.43 E-value=2.4 Score=44.32 Aligned_cols=89 Identities=19% Similarity=0.209 Sum_probs=47.7
Q ss_pred CCCEEEEecCCChhHHHHH-HHHH--hcCCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCC
Q 035988 106 GRDVLVIMAAGGGKSLCYQ-LPAV--LREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEG 182 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~-lpal--~~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (692)
|.-+++.+|+|+|||...+ +... ..++.++++..-.++-.. ..+++|+.
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~---ra~rlgv~------------------------- 112 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPV---YAKNLGVD------------------------- 112 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH---HHHHHTCC-------------------------
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchH---HHHHcCCc-------------------------
Confidence 4568999999999996432 2221 234566666554333221 33334432
Q ss_pred CccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCccccc
Q 035988 183 ELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCS 225 (692)
Q Consensus 183 ~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~ 225 (692)
.-++.+..|..+.. ....+.........+++|||.+..+.
T Consensus 113 ~~~l~i~~~~~~e~---~l~~~~~l~~~~~~dlvVIDSi~~l~ 152 (356)
T 3hr8_A 113 LKSLLISQPDHGEQ---ALEIVDELVRSGVVDLIVVDSVAALV 152 (356)
T ss_dssp GGGCEEECCSSHHH---HHHHHHHHHHTSCCSEEEEECTTTCC
T ss_pred hhhhhhhhccCHHH---HHHHHHHHhhhcCCCeEEehHhhhhc
Confidence 11344444443322 22223322223578999999988764
No 197
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=88.19 E-value=4.6 Score=45.93 Aligned_cols=81 Identities=21% Similarity=0.217 Sum_probs=69.4
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhh
Q 035988 130 REGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHH 209 (692)
Q Consensus 130 ~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~ 209 (692)
.+.++||.++++.-++...+.|...|+++..++|+.+..++..+...+..+ ..+|+|+|.- + .....
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g--~~~VLVaT~~-l----------~~GlD 510 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLG--KYDVLVGINL-L----------REGLD 510 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHT--SCSEEEESCC-C----------STTCC
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcC--CeEEEEecch-h----------hCCcc
Confidence 467999999999999999999999999999999999999999998888877 8999999853 2 23345
Q ss_pred cCCceEEEEeCccc
Q 035988 210 AGRLSLISIDEAHC 223 (692)
Q Consensus 210 ~~~l~~iVIDEaH~ 223 (692)
+..++++|+=+++.
T Consensus 511 ip~v~lVi~~d~d~ 524 (661)
T 2d7d_A 511 IPEVSLVAILDADK 524 (661)
T ss_dssp CTTEEEEEETTTTC
T ss_pred cCCCCEEEEeCccc
Confidence 56789999999876
No 198
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=88.12 E-value=3.1 Score=45.54 Aligned_cols=51 Identities=16% Similarity=0.132 Sum_probs=27.7
Q ss_pred CEEEEecCCChhHHHHH-HH-HHh-cCCeEEEEcc--cHHHHHHHHHHH-HHcCCCE
Q 035988 108 DVLVIMAAGGGKSLCYQ-LP-AVL-REGIALVVSP--LLSLIQDQVMCL-AALGIPA 158 (692)
Q Consensus 108 dviv~apTGsGKTl~~~-lp-al~-~~~~~lvi~P--t~~L~~q~~~~l-~~~gi~~ 158 (692)
.+++++++|+|||.... |. .+. .+.+++++.. .+..+.++.... ...++++
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v 159 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceE
Confidence 47788999999996543 22 122 2455666553 344444433322 3345554
No 199
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=87.88 E-value=2.1 Score=52.07 Aligned_cols=76 Identities=13% Similarity=0.196 Sum_probs=65.9
Q ss_pred CCCceEEEEeccchHHHHHHHHHHC----CCceeEeccCCCHHHHHHHHHHHhcCCCcEEEecc-ccccccCCCCccEEE
Q 035988 314 NSESGIVYCFSRKECEQVAQELRQR----GISADYYHADMDINAREKVHMRWSKNKLQVIVGTV-AFGMGINKPDVRFVI 388 (692)
Q Consensus 314 ~~~~~IIf~~s~~~~e~l~~~L~~~----g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~-~~~~GIDip~v~~VI 388 (692)
.+.+++|.|+|+.-+.+.++.+.+. ++.+..+++..+..++....+.+.+|..+|+|+|. .+...+.+.++.+||
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 6779999999999999999888753 67899999999999999999999999999999995 455668888888877
Q ss_pred E
Q 035988 389 H 389 (692)
Q Consensus 389 ~ 389 (692)
.
T Consensus 731 i 731 (1151)
T 2eyq_A 731 V 731 (1151)
T ss_dssp E
T ss_pred E
Confidence 4
No 200
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=87.85 E-value=5.1 Score=43.16 Aligned_cols=121 Identities=12% Similarity=0.043 Sum_probs=57.9
Q ss_pred HHHHHHc----CCCEEEEecCCChhHHHHH-HH--HHhcCCeEEEEcccHHHHHHHHHHHHH--cCCCEEEE-ecC--CC
Q 035988 99 IINAVLS----GRDVLVIMAAGGGKSLCYQ-LP--AVLREGIALVVSPLLSLIQDQVMCLAA--LGIPAHML-TST--TS 166 (692)
Q Consensus 99 ai~~il~----g~dviv~apTGsGKTl~~~-lp--al~~~~~~lvi~Pt~~L~~q~~~~l~~--~gi~~~~~-~~~--~~ 166 (692)
.++.++. |.-+++.|++|+|||...+ +. +...+..+++++--- =..|...++.. .|+....+ .|. ..
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEm-s~~ql~~R~~~~~~~i~~~~l~~g~~~l~ 264 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM-GKKENIKRLIVTAGSINAQKIKAARRDFA 264 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSS-CTTHHHHHHHHHHSCCCHHHHHHTGGGTC
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCC-CHHHHHHHHHHHHcCCCHHHHhcccCCCC
Confidence 4555554 3458999999999996443 21 223356777776432 12233333332 23332111 111 22
Q ss_pred hhHHHHH---HHHHHhcCCCccEEEe-ChhhhhchHHHHHHHHhhhhcCCce--EEEEeCcccccc
Q 035988 167 KEDEKFI---YKALEKGEGELKMLYV-TPEKISKSKRFMSKLEKCHHAGRLS--LISIDEAHCCSQ 226 (692)
Q Consensus 167 ~~~~~~~---~~~l~~~~~~~~Ili~-Tpe~l~~~~~~~~~l~~~~~~~~l~--~iVIDEaH~l~~ 226 (692)
..+...+ ...+. ...+.|. +|+ + +...+...+........++ +||||=.+.+..
T Consensus 265 ~~~~~~l~~a~~~l~----~~~l~i~d~~~-~-s~~~i~~~ir~l~~~~~~~~~lIVID~Lq~~~~ 324 (444)
T 3bgw_A 265 SEDWGKLSMAIGEIS----NSNINIFDKAG-Q-SVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEP 324 (444)
T ss_dssp CSCHHHHHHHHHHHH----TSCEEEECCSS-C-BHHHHHHHHHHHHHHSCSSCEEEEEECSTTSBC
T ss_pred HHHHHHHHHHHHHHh----cCCEEEECCCC-C-CHHHHHHHHHHHHHHhCCCCeEEEEecHHhccC
Confidence 2222211 22222 2345443 332 1 1123333333332224688 999999998863
No 201
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.78 E-value=2.8 Score=42.39 Aligned_cols=17 Identities=18% Similarity=0.286 Sum_probs=14.5
Q ss_pred CEEEEecCCChhHHHHH
Q 035988 108 DVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 108 dviv~apTGsGKTl~~~ 124 (692)
.+++.||+|+|||....
T Consensus 44 ~~ll~G~~G~GKt~la~ 60 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVH 60 (323)
T ss_dssp CEEEECSTTSSHHHHHH
T ss_pred eEEEECcCCCCHHHHHH
Confidence 49999999999997543
No 202
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=87.58 E-value=2.5 Score=44.19 Aligned_cols=34 Identities=18% Similarity=0.122 Sum_probs=22.7
Q ss_pred CCCEEEEecCCChhHHHHH-HHH--HhcCCeEEEEcc
Q 035988 106 GRDVLVIMAAGGGKSLCYQ-LPA--VLREGIALVVSP 139 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~-lpa--l~~~~~~lvi~P 139 (692)
|+-+++.+|+|+|||...+ +.. ...+..++++..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 5678999999999996543 221 223456666665
No 203
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=87.44 E-value=1 Score=43.97 Aligned_cols=37 Identities=16% Similarity=0.059 Sum_probs=25.9
Q ss_pred cCCCEEEEecCCChhHHHHHHHH---HhcCCeEEEEcccH
Q 035988 105 SGRDVLVIMAAGGGKSLCYQLPA---VLREGIALVVSPLL 141 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~~lpa---l~~~~~~lvi~Pt~ 141 (692)
.|+-.++.+|.|+|||...+--+ ..++.+++++-|..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecC
Confidence 35667889999999997654222 23467888888775
No 204
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.38 E-value=2.4 Score=45.75 Aligned_cols=19 Identities=32% Similarity=0.669 Sum_probs=16.0
Q ss_pred CCCEEEEecCCChhHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~ 124 (692)
-+.+|+.+|+|+|||+.+-
T Consensus 243 prGILLyGPPGTGKTlLAk 261 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCAR 261 (467)
T ss_dssp CSEEEECSCTTSSHHHHHH
T ss_pred CCceEeeCCCCCcHHHHHH
Confidence 3679999999999998653
No 205
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=87.29 E-value=1.1 Score=46.21 Aligned_cols=18 Identities=28% Similarity=0.259 Sum_probs=15.6
Q ss_pred CCEEEEecCCChhHHHHH
Q 035988 107 RDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~ 124 (692)
..+++.+|+|+|||....
T Consensus 56 ~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECcCCCCHHHHHH
Confidence 579999999999998654
No 206
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=87.10 E-value=1.5 Score=47.90 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=16.6
Q ss_pred CCCEEEEecCCChhHHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~l 125 (692)
.+.+++.+|+|+|||+....
T Consensus 238 ~~~vLL~GppGtGKT~lAra 257 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARA 257 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCcEEEECcCCCCHHHHHHH
Confidence 35699999999999986643
No 207
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=86.84 E-value=1.4 Score=45.19 Aligned_cols=89 Identities=10% Similarity=0.158 Sum_probs=50.8
Q ss_pred CEEEEecCCChhHHHHH-HH-H-Hhc--CCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCC
Q 035988 108 DVLVIMAAGGGKSLCYQ-LP-A-VLR--EGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEG 182 (692)
Q Consensus 108 dviv~apTGsGKTl~~~-lp-a-l~~--~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (692)
-+++.+|+|+|||...+ +. . ... ++++++|..-.++-.. +++++|+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~---ra~~lGvd------------------------- 81 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA---YLRSMGVD------------------------- 81 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH---HHHHTTCC-------------------------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH---HHHHhCCC-------------------------
Confidence 47899999999996433 21 1 222 5677777765554321 35555543
Q ss_pred CccEEEeChhhhhch-HHHHHHHHhhhhcCCceEEEEeCccccc
Q 035988 183 ELKMLYVTPEKISKS-KRFMSKLEKCHHAGRLSLISIDEAHCCS 225 (692)
Q Consensus 183 ~~~Ili~Tpe~l~~~-~~~~~~l~~~~~~~~l~~iVIDEaH~l~ 225 (692)
.-++++..|..+... ....+.+.. ..-..+++||||=+..+.
T Consensus 82 ~d~llv~~~~~~E~~~l~i~~~l~~-i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 82 PERVIHTPVQSLEQLRIDMVNQLDA-IERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp GGGEEEEECSBHHHHHHHHHHHHHT-CCTTCCEEEEEECSTTCB
T ss_pred HHHeEEEcCCCHHHHHHHHHHHHHH-hhccCceEEEEecccccc
Confidence 124566666544321 112222211 233578999999999875
No 208
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.80 E-value=3.9 Score=43.81 Aligned_cols=19 Identities=32% Similarity=0.487 Sum_probs=16.1
Q ss_pred CCEEEEecCCChhHHHHHH
Q 035988 107 RDVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~l 125 (692)
+.+++.||+|+|||+.+-.
T Consensus 207 rGiLL~GPPGtGKT~lakA 225 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKA 225 (428)
T ss_dssp CEEEEESCTTTTHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 5699999999999986543
No 209
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=86.54 E-value=1.2 Score=56.41 Aligned_cols=95 Identities=16% Similarity=0.197 Sum_probs=54.7
Q ss_pred HHHHHc------CCCEEEEecCCChhHHHHH---HHHHhcCCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHH
Q 035988 100 INAVLS------GRDVLVIMAAGGGKSLCYQ---LPAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDE 170 (692)
Q Consensus 100 i~~il~------g~dviv~apTGsGKTl~~~---lpal~~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~ 170 (692)
++.++. ++.+++.+|+|+|||.... .-+..++.+++++..--++.... +++.|++..
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~---a~~~G~dl~----------- 1480 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDID----------- 1480 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH---HHHTTCCTT-----------
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHH---HHHcCCCch-----------
Confidence 555665 6889999999999996543 22334567888877664443332 445553311
Q ss_pred HHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCccccc
Q 035988 171 KFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCS 225 (692)
Q Consensus 171 ~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~ 225 (692)
.+.|..|+... .+...+........+++|||||..-+.
T Consensus 1481 --------------~l~v~~~~~~E---~~l~~~~~lvr~~~~~lVVIDsi~al~ 1518 (2050)
T 3cmu_A 1481 --------------NLLCSQPDTGE---QALEICDALARSGAVDVIVVDSVAALT 1518 (2050)
T ss_dssp --------------TCEEECCSSHH---HHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred --------------hceeecCChHH---HHHHHHHHHHhcCCCCEEEEcChhHhc
Confidence 12333443221 222223322233579999999997654
No 210
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=86.49 E-value=5.4 Score=42.65 Aligned_cols=54 Identities=19% Similarity=0.273 Sum_probs=28.9
Q ss_pred cCCCEEEEecCCChhHHHHH-HHHHh--cCCeEEEEc--ccHHHHHHHHHHHH-HcCCCE
Q 035988 105 SGRDVLVIMAAGGGKSLCYQ-LPAVL--REGIALVVS--PLLSLIQDQVMCLA-ALGIPA 158 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~~-lpal~--~~~~~lvi~--Pt~~L~~q~~~~l~-~~gi~~ 158 (692)
.++-+.+.+++|+|||.+.. +.... .+++++++. +.+..+.++...+. ..|+++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v 156 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPV 156 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccE
Confidence 34557788999999996543 33222 245555543 34444444433332 334443
No 211
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.41 E-value=2.5 Score=43.59 Aligned_cols=16 Identities=25% Similarity=0.299 Sum_probs=14.1
Q ss_pred EEEEecCCChhHHHHH
Q 035988 109 VLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 109 viv~apTGsGKTl~~~ 124 (692)
+++.||+|+|||....
T Consensus 49 ~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIV 64 (340)
T ss_dssp EEEECSSSSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 8999999999997654
No 212
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=86.37 E-value=2.9 Score=45.59 Aligned_cols=90 Identities=11% Similarity=0.034 Sum_probs=58.1
Q ss_pred cCCCEEEEecCCChhHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHc-CCCEEEEecC-------C-C-hh---HHH
Q 035988 105 SGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMCLAAL-GIPAHMLTST-------T-S-KE---DEK 171 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~~lpal~~~~~~lvi~Pt~~L~~q~~~~l~~~-gi~~~~~~~~-------~-~-~~---~~~ 171 (692)
.+....+.+-||||||++..--+-..++.+|||+|+...+.+.+..++.+ +-.+..+.+- . . .+ .+-
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~l~~~~~~p~lvv~~~~~~A~~l~~~l~~~~~~~v~~fp~~e~lpyd~~~p~~~~~~~Rl 92 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRL 92 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHHHHHHSSSCEEEEESSHHHHHHHHHHHHHTCSSCEEECCCCCSCTTCSSCCCHHHHHHHH
T ss_pred CCCeEEEeCCCchHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHhhCCCcEEEEeCcccccccccCCChHHHHHHH
Confidence 35568899999999998543322234678999999999999999999987 3343333221 0 1 11 122
Q ss_pred HHHHHHHhcCCCccEEEeChhhhhc
Q 035988 172 FIYKALEKGEGELKMLYVTPEKISK 196 (692)
Q Consensus 172 ~~~~~l~~~~~~~~Ili~Tpe~l~~ 196 (692)
..+..+..+ ...|+|+|...+..
T Consensus 93 ~~l~~L~~~--~~~ivv~sv~al~~ 115 (483)
T 3hjh_A 93 STLYQLPTM--QRGVLIVPVNTLMQ 115 (483)
T ss_dssp HHHHHGGGC--CSSEEEEEHHHHHB
T ss_pred HHHHHHHhC--CCCEEEEEHHHHhh
Confidence 233334333 55788998887653
No 213
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=86.23 E-value=1.1 Score=43.26 Aligned_cols=38 Identities=18% Similarity=0.093 Sum_probs=24.4
Q ss_pred cCCCEEEEecCCChhHHHHHHHH---HhcCCeEEEEcccHH
Q 035988 105 SGRDVLVIMAAGGGKSLCYQLPA---VLREGIALVVSPLLS 142 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~~lpa---l~~~~~~lvi~Pt~~ 142 (692)
.|.-.++.+|.|+|||...+--+ ...+.+++++.|...
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D 67 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAID 67 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC--
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccC
Confidence 35567899999999997443211 123567888888653
No 214
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=86.21 E-value=4.2 Score=47.05 Aligned_cols=17 Identities=18% Similarity=0.262 Sum_probs=14.8
Q ss_pred CEEEEecCCChhHHHHH
Q 035988 108 DVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 108 dviv~apTGsGKTl~~~ 124 (692)
.+++.+|||+|||..+.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 49999999999998654
No 215
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=86.19 E-value=1.7 Score=45.80 Aligned_cols=75 Identities=13% Similarity=0.100 Sum_probs=63.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhc
Q 035988 131 EGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHA 210 (692)
Q Consensus 131 ~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~ 210 (692)
++++||.++++.-+....+.+.+.|+.+..++|+.+..++..+.+.+..+ ..+|+|+|.- + ....++
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g--~~~vlv~T~~-~----------~~Gidi 332 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG--KEKVLVTTNV-C----------ARGIDV 332 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTT--SCSEEEECGG-G----------TSSCCC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCC--CCcEEEEcCc-c----------ccCCCc
Confidence 47999999999999999999999999999999999999999999999887 8899999953 2 233455
Q ss_pred CCceEEEE
Q 035988 211 GRLSLISI 218 (692)
Q Consensus 211 ~~l~~iVI 218 (692)
..+++||.
T Consensus 333 p~~~~Vi~ 340 (412)
T 3fht_A 333 EQVSVVIN 340 (412)
T ss_dssp TTEEEEEE
T ss_pred cCCCEEEE
Confidence 67777764
No 216
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=86.19 E-value=5.2 Score=43.61 Aligned_cols=98 Identities=9% Similarity=-0.011 Sum_probs=73.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhc
Q 035988 131 EGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHA 210 (692)
Q Consensus 131 ~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~ 210 (692)
++..+|+...+.-+....+.|.+.+.++..++|+.+..++..+...+..+ ..+|+|+|+..+. ...++
T Consensus 347 ~~~~~ivf~~~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g--~~~vLv~T~~~~~----------~GiDi 414 (510)
T 2oca_A 347 DENAFVMFKHVSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENG--KGIIIVASYGVFS----------TGISV 414 (510)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHC--CSCEEEEEHHHHH----------HSCCC
T ss_pred CCCeEEEEecHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCC--CCCEEEEEcChhh----------ccccc
Confidence 45566666667778888889998888999999999999998888888877 8899999988663 34466
Q ss_pred CCceEEEEeCcccccccCCCchHHHHHHHHHHhhCC
Q 035988 211 GRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFP 246 (692)
Q Consensus 211 ~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~ 246 (692)
.+++++|+..+. |+ ....+..++..-+..+
T Consensus 415 p~v~~vi~~~~~----~s--~~~~~Q~~GR~gR~g~ 444 (510)
T 2oca_A 415 KNLHHVVLAHGV----KS--KIIVLQTIGRVLRKHG 444 (510)
T ss_dssp CSEEEEEESSCC----CS--CCHHHHHHHHHHTTTC
T ss_pred ccCcEEEEeCCC----CC--HHHHHHHHhcccccCC
Confidence 788999987766 33 3444555555544433
No 217
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=85.89 E-value=0.56 Score=49.58 Aligned_cols=72 Identities=8% Similarity=0.056 Sum_probs=56.6
Q ss_pred chHHHHHHHHHHHHHHHHHhCCCCceEeccHHHHHHHHHcCCCChhhcchhhhhhcccchhhhhhhHHHHHHHHhh
Q 035988 573 TSSALEFELDELRKELASISGGILPHSVLSSQLIRLISARKPSTMEEASSNHLEKIIGKLKTGKYGSRILEVISKC 648 (692)
Q Consensus 573 ~~~~l~~~l~~~r~~~a~~~~~~~~~~i~~~~~l~~~~~~~p~~~~~~~~~~l~~i~g~~k~~~~g~~~l~~~~~~ 648 (692)
...++++.|+.|+++.|++ .|+||-.|.+.+.|+.++...|.+.++. .+...+...+.+-+|+.+++++..+
T Consensus 302 ~~~~~~~~l~~~~~~~a~~-~~~~~~~l~~~~~l~~l~~~~~~~~~~~---~~~~~l~~Wr~~~~~~~l~~~l~~~ 373 (375)
T 1yt3_A 302 GYRKAFKAIKSLITDVSET-HKISAELLASRRQINQLLNWHWKLKPQN---NLPELISGWRGELMAEALHNLLQEY 373 (375)
T ss_dssp THHHHHHHHHHHHHHHHHH-HTCCHHHHCCHHHHHHHHHHHTTCSCCS---SCCGGGSHHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHHHHH-hCCCHHHcCCHHHHHHHHhhcccCCCcc---hhhhhhcchHHHHHHHHHHHHHhcC
Confidence 3678999999999999999 8999999999999999997544332110 0222366889999999999998643
No 218
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=85.77 E-value=1.1 Score=45.80 Aligned_cols=19 Identities=21% Similarity=0.209 Sum_probs=16.0
Q ss_pred CCCEEEEecCCChhHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~ 124 (692)
...+++.+|+|+|||....
T Consensus 38 ~~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CCCCEEECCTTCCCHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 3679999999999998654
No 219
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=85.72 E-value=2 Score=44.78 Aligned_cols=78 Identities=10% Similarity=0.079 Sum_probs=64.5
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhh
Q 035988 130 REGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHH 209 (692)
Q Consensus 130 ~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~ 209 (692)
.++++||.++++.-+....+.+...|+.+..++|+.+..++..+.+.+..+ ..+|+|+|.- + ....+
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~--~~~vlv~T~~-~----------~~Gid 315 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDF--QRRILVATNL-F----------GRGMD 315 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT--CCSEEEESCC-C----------SSCBC
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcC--CCcEEEECCh-h----------hcCCC
Confidence 357999999999999999999999999999999999999999999988877 8899999942 2 22334
Q ss_pred cCCceEEEEeC
Q 035988 210 AGRLSLISIDE 220 (692)
Q Consensus 210 ~~~l~~iVIDE 220 (692)
+..++++|.-.
T Consensus 316 i~~~~~Vi~~~ 326 (391)
T 1xti_A 316 IERVNIAFNYD 326 (391)
T ss_dssp CTTEEEEEESS
T ss_pred cccCCEEEEeC
Confidence 56677777644
No 220
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=85.69 E-value=0.94 Score=54.82 Aligned_cols=78 Identities=10% Similarity=0.180 Sum_probs=66.6
Q ss_pred CCCceEEEEeccchHHHHHHHHHH---CCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccc-----cccccCCCCcc
Q 035988 314 NSESGIVYCFSRKECEQVAQELRQ---RGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVA-----FGMGINKPDVR 385 (692)
Q Consensus 314 ~~~~~IIf~~s~~~~e~l~~~L~~---~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~-----~~~GIDip~v~ 385 (692)
.+.++||.++++.-+.++++.|+. .++.+..+||+++..+|....+.+.+|..+|+|+|.- +.. ++..+++
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~~l~ 198 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFD 198 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HHTSCCS
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hcccCcC
Confidence 678999999999999999999998 4778999999999999999999999999999999963 222 5667888
Q ss_pred EEEEeCC
Q 035988 386 FVIHHSL 392 (692)
Q Consensus 386 ~VI~~~~ 392 (692)
+||.-..
T Consensus 199 ~lViDEa 205 (1104)
T 4ddu_A 199 FVFVDDV 205 (1104)
T ss_dssp EEEESCH
T ss_pred EEEEeCC
Confidence 8885443
No 221
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=85.42 E-value=2 Score=45.10 Aligned_cols=75 Identities=7% Similarity=0.156 Sum_probs=62.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhc
Q 035988 131 EGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHA 210 (692)
Q Consensus 131 ~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~ 210 (692)
.+++||.++++.-+....+.+...|+.+..++|+.+..++..+.+.+..+ ..+|+|+|.- + ....++
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g--~~~vLv~T~~-~----------~~Gidi 324 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQG--KVRTLVCSDL-L----------TRGIDI 324 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTT--SSSEEEESSC-S----------SSSCCC
T ss_pred CCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcC--CCcEEEEcCc-c----------ccCCCc
Confidence 47899999999999999999999999999999999999999999988877 8899999942 2 223345
Q ss_pred CCceEEEE
Q 035988 211 GRLSLISI 218 (692)
Q Consensus 211 ~~l~~iVI 218 (692)
..+++||.
T Consensus 325 p~~~~Vi~ 332 (400)
T 1s2m_A 325 QAVNVVIN 332 (400)
T ss_dssp TTEEEEEE
T ss_pred cCCCEEEE
Confidence 56676664
No 222
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=85.27 E-value=9.2 Score=38.32 Aligned_cols=35 Identities=17% Similarity=0.111 Sum_probs=22.4
Q ss_pred cCCCEEEEecCCChhHHHHH-HHHHh--c-CCeEEEEcc
Q 035988 105 SGRDVLVIMAAGGGKSLCYQ-LPAVL--R-EGIALVVSP 139 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~~-lpal~--~-~~~~lvi~P 139 (692)
.|.-+++.||+|+|||.... +.... . +..++++..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 46678999999999996543 32222 2 336666653
No 223
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=84.84 E-value=4.6 Score=43.03 Aligned_cols=78 Identities=19% Similarity=0.241 Sum_probs=61.3
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHcCCCEEEEec--------CCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHH
Q 035988 130 REGIALVVSPLLSLIQDQVMCLAALGIPAHMLTS--------TTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFM 201 (692)
Q Consensus 130 ~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~ 201 (692)
.+.++||.++++.-+....+.+...|+++..++| +.+..++..+.+.+..+ ..+|+|+| ..+.
T Consensus 360 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~--~~~vLv~T-~~~~------ 430 (494)
T 1wp9_A 360 QNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARG--EFNVLVAT-SVGE------ 430 (494)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHT--SCSEEEEC-GGGG------
T ss_pred CCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcC--CceEEEEC-Cccc------
Confidence 4689999999999999999999999999999999 78888888888888887 78999999 3332
Q ss_pred HHHHhhhhcCCceEEEEeC
Q 035988 202 SKLEKCHHAGRLSLISIDE 220 (692)
Q Consensus 202 ~~l~~~~~~~~l~~iVIDE 220 (692)
...++..+++||+-+
T Consensus 431 ----~Gldl~~~~~Vi~~d 445 (494)
T 1wp9_A 431 ----EGLDVPEVDLVVFYE 445 (494)
T ss_dssp ----GGGGSTTCCEEEESS
T ss_pred ----cCCCchhCCEEEEeC
Confidence 234556677777543
No 224
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=84.68 E-value=2.1 Score=47.21 Aligned_cols=76 Identities=11% Similarity=0.147 Sum_probs=63.5
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhh
Q 035988 130 REGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHH 209 (692)
Q Consensus 130 ~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~ 209 (692)
.+..+||.++++.-++...+.|+..|+.+..++|+.+..++..+...+..+ ..+|+|+|.- + ....+
T Consensus 235 ~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g--~~~vlVaT~a-~----------~~GiD 301 (523)
T 1oyw_A 235 RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRD--DLQIVVATVA-F----------GMGIN 301 (523)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT--SCSEEEECTT-S----------CTTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcC--CCeEEEEech-h----------hCCCC
Confidence 356899999999999999999999999999999999999999999999887 8999999963 1 12234
Q ss_pred cCCceEEEE
Q 035988 210 AGRLSLISI 218 (692)
Q Consensus 210 ~~~l~~iVI 218 (692)
..++++||.
T Consensus 302 ~p~v~~VI~ 310 (523)
T 1oyw_A 302 KPNVRFVVH 310 (523)
T ss_dssp CTTCCEEEE
T ss_pred ccCccEEEE
Confidence 456777764
No 225
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=84.54 E-value=2.8 Score=46.99 Aligned_cols=75 Identities=12% Similarity=0.134 Sum_probs=63.1
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhh
Q 035988 130 REGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHH 209 (692)
Q Consensus 130 ~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~ 209 (692)
.+..+||.++++.-+++....|...|+.+..++++.+..++..+...+..+ ..+|+|+|.- + ....+
T Consensus 266 ~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g--~~~VlVAT~a-~----------~~GID 332 (591)
T 2v1x_A 266 KGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSAN--EIQVVVATVA-F----------GMGID 332 (591)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT--SSSEEEECTT-S----------CTTCC
T ss_pred cCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcC--CCeEEEEech-h----------hcCCC
Confidence 357999999999999999999999999999999999999999999998877 8999999953 1 12234
Q ss_pred cCCceEEE
Q 035988 210 AGRLSLIS 217 (692)
Q Consensus 210 ~~~l~~iV 217 (692)
..++++||
T Consensus 333 ~p~V~~VI 340 (591)
T 2v1x_A 333 KPDVRFVI 340 (591)
T ss_dssp CSCEEEEE
T ss_pred cccccEEE
Confidence 45677776
No 226
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=84.43 E-value=4.1 Score=47.92 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=15.3
Q ss_pred CCEEEEecCCChhHHHHH
Q 035988 107 RDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~ 124 (692)
.++++++|+|+|||....
T Consensus 192 ~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp CCCEEEECTTSCHHHHHH
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 479999999999997553
No 227
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=84.24 E-value=2.3 Score=44.85 Aligned_cols=75 Identities=12% Similarity=0.095 Sum_probs=63.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhc
Q 035988 131 EGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHA 210 (692)
Q Consensus 131 ~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~ 210 (692)
.+++||.++++.-+....+.+...|+.+..++|+.+..++..+...+..+ ..+|+|+|.- + ....++
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g--~~~vlv~T~~-~----------~~Gidi 342 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSG--ASRVLISTDV-W----------ARGLDV 342 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHT--SSCEEEECGG-G----------SSSCCC
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCC--CCCEEEECCh-h----------hCcCCc
Confidence 57899999999999999999999999999999999999999999999887 8899999953 2 223345
Q ss_pred CCceEEEE
Q 035988 211 GRLSLISI 218 (692)
Q Consensus 211 ~~l~~iVI 218 (692)
..+++||.
T Consensus 343 ~~v~~Vi~ 350 (410)
T 2j0s_A 343 PQVSLIIN 350 (410)
T ss_dssp TTEEEEEE
T ss_pred ccCCEEEE
Confidence 56777764
No 228
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=84.12 E-value=0.36 Score=47.23 Aligned_cols=49 Identities=22% Similarity=0.238 Sum_probs=29.2
Q ss_pred CCCEEEEecCCChhHH-HHHHH--HHhc-CCeEEEEcccHHHHHHHHHHHHHcC
Q 035988 106 GRDVLVIMAAGGGKSL-CYQLP--AVLR-EGIALVVSPLLSLIQDQVMCLAALG 155 (692)
Q Consensus 106 g~dviv~apTGsGKTl-~~~lp--al~~-~~~~lvi~Pt~~L~~q~~~~l~~~g 155 (692)
|.-+++.|++|+|||. |.++. +... +..+++++-. .-..+..+.+...+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E-~~~~~~~~~~~~~~ 82 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE-ERARDLRREMASFG 82 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS-SCHHHHHHHHHTTT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc-CCHHHHHHHHHHcC
Confidence 5668999999999995 44432 1223 4567776533 22444555555543
No 229
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=84.10 E-value=2.8 Score=39.94 Aligned_cols=74 Identities=20% Similarity=0.332 Sum_probs=55.2
Q ss_pred CCceEEEEeccchHHHHHHHHHHC-----CCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccc------cccccCCCC
Q 035988 315 SESGIVYCFSRKECEQVAQELRQR-----GISADYYHADMDINAREKVHMRWSKNKLQVIVGTVA------FGMGINKPD 383 (692)
Q Consensus 315 ~~~~IIf~~s~~~~e~l~~~L~~~-----g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~------~~~GIDip~ 383 (692)
+.++||.|+++.-+.++++.++.. ++.+..++|+.+...+.. .+..+..+|+|+|.- -...++..+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 348999999999999999888765 788999999998765543 345577799999963 123456677
Q ss_pred ccEEEEeC
Q 035988 384 VRFVIHHS 391 (692)
Q Consensus 384 v~~VI~~~ 391 (692)
+++||.-.
T Consensus 159 ~~~lViDE 166 (220)
T 1t6n_A 159 IKHFILDE 166 (220)
T ss_dssp CCEEEEES
T ss_pred CCEEEEcC
Confidence 77777543
No 230
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=83.96 E-value=2.7 Score=40.77 Aligned_cols=34 Identities=21% Similarity=0.174 Sum_probs=22.2
Q ss_pred cCCCEEEEecCCChhHHHHHHHH---H-hcCCeEEEEc
Q 035988 105 SGRDVLVIMAAGGGKSLCYQLPA---V-LREGIALVVS 138 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~~lpa---l-~~~~~~lvi~ 138 (692)
.|.-+.+.+|+|+|||.....-+ + ..+..++++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 46779999999999997543222 2 3344555544
No 231
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=83.94 E-value=7.6 Score=39.28 Aligned_cols=43 Identities=14% Similarity=0.086 Sum_probs=24.1
Q ss_pred CCCEEEEecCCChhHHHHH-HHHHh--cCCeEEEEc--ccHHHHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQ-LPAVL--REGIALVVS--PLLSLIQDQV 148 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~-lpal~--~~~~~lvi~--Pt~~L~~q~~ 148 (692)
++-+.+.+++|+|||.... +.... .+++++++. |.+..+.++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql 145 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQL 145 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHH
Confidence 4457788999999996543 32222 245555543 2344444433
No 232
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=83.91 E-value=8.9 Score=40.60 Aligned_cols=26 Identities=19% Similarity=0.172 Sum_probs=18.8
Q ss_pred HHHHHHc-----CCCEEEEecCCChhHHHHH
Q 035988 99 IINAVLS-----GRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 99 ai~~il~-----g~dviv~apTGsGKTl~~~ 124 (692)
.++.++. |.-+.+.+|+|+|||....
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~ 196 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCH 196 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHH
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHH
Confidence 3555553 4568999999999996543
No 233
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=83.71 E-value=16 Score=37.10 Aligned_cols=54 Identities=11% Similarity=0.116 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhcccCCCcccCHHHHHHHHHHHHHcCccccc
Q 035988 478 LAGHAQCIISLLQDIQDNNQRLTMLQLVDKMKIKLKEIDSDLKREEIEQLVLQLIIDRVLVRI 540 (692)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~l~~~ 540 (692)
.+...+.++..+.. +. +...+.+.+... .|...+...+...+..|...|+|...
T Consensus 288 l~~~~~~~l~~la~-----g~-~~~~l~~~~~~~---~g~~~~~~~~~~~L~~L~~~gli~~~ 341 (357)
T 2fna_A 288 ARKRYLNIMRTLSK-----CG-KWSDVKRALELE---EGIEISDSEIYNYLTQLTKHSWIIKE 341 (357)
T ss_dssp GHHHHHHHHHHHTT-----CB-CHHHHHHHHHHH---HCSCCCHHHHHHHHHHHHHTTSEEES
T ss_pred ccHHHHHHHHHHHc-----CC-CHHHHHHHHHHh---cCCCCCHHHHHHHHHHHHhCCCEEec
Confidence 35667777776652 33 666666554321 12246788899999999999998543
No 234
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=83.54 E-value=0.97 Score=52.49 Aligned_cols=19 Identities=21% Similarity=0.316 Sum_probs=16.0
Q ss_pred CCCEEEEecCCChhHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~ 124 (692)
+.++++.+|+|+|||....
T Consensus 207 ~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp SCEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHH
Confidence 4679999999999998653
No 235
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=83.49 E-value=5.3 Score=42.83 Aligned_cols=41 Identities=27% Similarity=0.233 Sum_probs=23.6
Q ss_pred CEEEEecCCChhHHHHH-HHH-Hh-c-CCeEEEEc--ccHHHHHHHH
Q 035988 108 DVLVIMAAGGGKSLCYQ-LPA-VL-R-EGIALVVS--PLLSLIQDQV 148 (692)
Q Consensus 108 dviv~apTGsGKTl~~~-lpa-l~-~-~~~~lvi~--Pt~~L~~q~~ 148 (692)
.+++++++|+|||.+.. |.. +. . +.+++++. |.+..+.++.
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql 148 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQL 148 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHH
Confidence 46778999999996543 222 22 2 45555544 4444444443
No 236
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=83.38 E-value=5.2 Score=50.13 Aligned_cols=96 Identities=15% Similarity=0.170 Sum_probs=52.0
Q ss_pred HHHHHHc------CCCEEEEecCCChhHHHHHHHH---HhcCCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhH
Q 035988 99 IINAVLS------GRDVLVIMAAGGGKSLCYQLPA---VLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKED 169 (692)
Q Consensus 99 ai~~il~------g~dviv~apTGsGKTl~~~lpa---l~~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~ 169 (692)
.++.++. |.-+++.+|+|+|||...+--+ ...++.+++++--.+. .|.. .+.+|+.
T Consensus 719 eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~-~ql~--A~~lGvd------------ 783 (1706)
T 3cmw_A 719 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL-DPIY--ARKLGVD------------ 783 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCC-CHHH--HHHTTCC------------
T ss_pred HHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchH-HHHH--HHHcCCC------------
Confidence 3555553 4678999999999996443211 1234456665533222 1111 3333332
Q ss_pred HHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCccccc
Q 035988 170 EKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCS 225 (692)
Q Consensus 170 ~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~ 225 (692)
.-+++|..+..+. .+...+.....-..+++||||+...+.
T Consensus 784 -------------~~~L~i~~~~~le---ei~~~l~~lv~~~~~~lVVIDsLq~l~ 823 (1706)
T 3cmw_A 784 -------------IDNLLCSQPDTGE---QALEICDALARSGAVDVIVVDSVAALT 823 (1706)
T ss_dssp -------------GGGCEEECCSSHH---HHHHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred -------------hhheEEecCCcHH---HHHHHHHHHHHccCCCEEEEechhhhc
Confidence 1234555555443 333333332223578999999999886
No 237
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=83.01 E-value=2.9 Score=40.65 Aligned_cols=73 Identities=11% Similarity=0.105 Sum_probs=53.1
Q ss_pred CCCceEEEEeccchHHHHHHHHHHC----CCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccc-----c-ccccCCCC
Q 035988 314 NSESGIVYCFSRKECEQVAQELRQR----GISADYYHADMDINAREKVHMRWSKNKLQVIVGTVA-----F-GMGINKPD 383 (692)
Q Consensus 314 ~~~~~IIf~~s~~~~e~l~~~L~~~----g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~-----~-~~GIDip~ 383 (692)
.+.++||.|+++.-+.++++.++.. ++.+..++|+.+.......+.. ..+|+|+|.- + ...+++.+
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCccc
Confidence 4567999999999999988877653 8899999999987766554432 4789999962 2 22346667
Q ss_pred ccEEEEe
Q 035988 384 VRFVIHH 390 (692)
Q Consensus 384 v~~VI~~ 390 (692)
+++||.-
T Consensus 177 ~~~lViD 183 (242)
T 3fe2_A 177 TTYLVLD 183 (242)
T ss_dssp CCEEEET
T ss_pred ccEEEEe
Confidence 7776643
No 238
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=82.80 E-value=0.82 Score=40.88 Aligned_cols=21 Identities=19% Similarity=0.181 Sum_probs=17.8
Q ss_pred cCCCEEEEecCCChhHHHHHH
Q 035988 105 SGRDVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~~l 125 (692)
.+.++++.+|+|+|||..+..
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~ 43 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARY 43 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHH
Confidence 567899999999999987643
No 239
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=82.66 E-value=3 Score=45.34 Aligned_cols=18 Identities=28% Similarity=0.565 Sum_probs=15.4
Q ss_pred CCEEEEecCCChhHHHHH
Q 035988 107 RDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~ 124 (692)
+.+++.+|+|+|||+..-
T Consensus 50 ~gvLL~GppGtGKT~Lar 67 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLAR 67 (476)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 569999999999998654
No 240
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=82.06 E-value=15 Score=37.68 Aligned_cols=53 Identities=15% Similarity=0.246 Sum_probs=29.3
Q ss_pred CceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHH
Q 035988 212 RLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLME 267 (692)
Q Consensus 212 ~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~ 267 (692)
..+++++|.+..... .......+.. ..+...|+.+++++.+|......+.+..
T Consensus 211 ~~d~vliDtaG~~~~-~~~l~~eL~~--i~ral~~de~llvLDa~t~~~~~~~~~~ 263 (328)
T 3e70_C 211 GIDVVLIDTAGRSET-NRNLMDEMKK--IARVTKPNLVIFVGDALAGNAIVEQARQ 263 (328)
T ss_dssp TCSEEEEEECCSCCT-TTCHHHHHHH--HHHHHCCSEEEEEEEGGGTTHHHHHHHH
T ss_pred cchhhHHhhccchhH-HHHHHHHHHH--HHHHhcCCCCEEEEecHHHHHHHHHHHH
Confidence 466788888866421 1112222222 2233457777888888877655554433
No 241
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=81.93 E-value=3.1 Score=44.58 Aligned_cols=75 Identities=9% Similarity=0.081 Sum_probs=62.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhc
Q 035988 131 EGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHA 210 (692)
Q Consensus 131 ~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~ 210 (692)
...+||.++++.-+....+.|.+.|+.+..++|+.+..++..+...+..+ ..+|+|+|.- + ....++
T Consensus 300 ~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g--~~~vLvaT~v-~----------~rGlDi 366 (434)
T 2db3_A 300 ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNG--SMKVLIATSV-A----------SRGLDI 366 (434)
T ss_dssp CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTS--SCSEEEECGG-G----------TSSCCC
T ss_pred CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcC--CCcEEEEchh-h----------hCCCCc
Confidence 34599999999999999999999999999999999999999999999887 8999999963 1 223345
Q ss_pred CCceEEEE
Q 035988 211 GRLSLISI 218 (692)
Q Consensus 211 ~~l~~iVI 218 (692)
.++++||.
T Consensus 367 ~~v~~VI~ 374 (434)
T 2db3_A 367 KNIKHVIN 374 (434)
T ss_dssp TTCCEEEE
T ss_pred ccCCEEEE
Confidence 56666664
No 242
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=81.83 E-value=11 Score=41.09 Aligned_cols=115 Identities=10% Similarity=0.014 Sum_probs=52.9
Q ss_pred CCCEEEEecCCChhHHHHH-HHH--Hhc-CCeEEEEcccHHHHHHHHHHHH--HcCCCEE----EEecCCChhHHHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQ-LPA--VLR-EGIALVVSPLLSLIQDQVMCLA--ALGIPAH----MLTSTTSKEDEKFIYK 175 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~-lpa--l~~-~~~~lvi~Pt~~L~~q~~~~l~--~~gi~~~----~~~~~~~~~~~~~~~~ 175 (692)
|.-+++.|++|+|||...+ +.. ... +..+++++---+ ..|...++. ..|+... ...+.....+......
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s-~~~l~~r~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~ 320 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES-VEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFD 320 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC-HHHHHHHHHHHHTTSCCTTCHHHHHHHHHTSHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC-HHHHHHHHHHHHcCCChhhccccccCCCCHHHHHHHHH
Confidence 4558999999999996443 321 222 457777764322 334444442 2333321 0001111111111222
Q ss_pred HHHhcCCCccEEEe-ChhhhhchHHHHHHHHhhhhcCCceEEEEeCccccc
Q 035988 176 ALEKGEGELKMLYV-TPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCS 225 (692)
Q Consensus 176 ~l~~~~~~~~Ili~-Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~ 225 (692)
.+.. ...+.+. +|..+. ...+...+........+++||||=.+.+.
T Consensus 321 ~~~~---~~~l~i~~~~~~~~-~~~i~~~i~~~~~~~~~~lvVID~l~~l~ 367 (503)
T 1q57_A 321 ELFG---NDTFHLYDSFAEAE-TDRLLAKLAYMRSGLGCDVIILDHISIVV 367 (503)
T ss_dssp HHHT---TTCEEEECCC---C-HHHHHHHHHHHHHTTCCSEEEEECTTCCC
T ss_pred HHhc---cCCEEEECCCCCCC-HHHHHHHHHHHHHhcCCCEEEEccchhcC
Confidence 2211 2234443 332111 12333333333333478999999888764
No 243
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=82.62 E-value=0.28 Score=45.35 Aligned_cols=58 Identities=17% Similarity=0.186 Sum_probs=51.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeC
Q 035988 131 EGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVT 190 (692)
Q Consensus 131 ~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~T 190 (692)
++++||.++++.-+....+.|+..|+.+..++|+.+..++......+..+ ..+|+|+|
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g--~~~vLvaT 87 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG--RVNVLVAT 87 (170)
Confidence 46788999999999999999999999999999999888888888888776 78899998
No 244
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=81.76 E-value=0.88 Score=48.97 Aligned_cols=41 Identities=29% Similarity=0.318 Sum_probs=31.0
Q ss_pred cCCCEEEEecCCChhHHHH--HHHHHh-cCCeEEEEcccHHHHH
Q 035988 105 SGRDVLVIMAAGGGKSLCY--QLPAVL-REGIALVVSPLLSLIQ 145 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~--~lpal~-~~~~~lvi~Pt~~L~~ 145 (692)
...++++.|+||+|||... +++.+. .+..++|+=|--++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCchhH
Confidence 4578999999999999876 555544 4567777778877754
No 245
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=81.70 E-value=7.1 Score=38.15 Aligned_cols=72 Identities=14% Similarity=0.250 Sum_probs=52.7
Q ss_pred CCCceEEEEeccchHHHHHHHHHHC----CCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccc-----c--ccccCCC
Q 035988 314 NSESGIVYCFSRKECEQVAQELRQR----GISADYYHADMDINAREKVHMRWSKNKLQVIVGTVA-----F--GMGINKP 382 (692)
Q Consensus 314 ~~~~~IIf~~s~~~~e~l~~~L~~~----g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~-----~--~~GIDip 382 (692)
.+.++||.++++.-+.++++.++.. ++.+..++|+.+...+.... .+..+|+|+|.- + ..++++.
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~ 185 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLR 185 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCcc
Confidence 4567999999999999999888764 78899999998866544332 246789999963 1 1345666
Q ss_pred CccEEEE
Q 035988 383 DVRFVIH 389 (692)
Q Consensus 383 ~v~~VI~ 389 (692)
++++||.
T Consensus 186 ~~~~lVi 192 (249)
T 3ber_A 186 ALKYLVM 192 (249)
T ss_dssp TCCEEEE
T ss_pred ccCEEEE
Confidence 6776664
No 246
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=80.94 E-value=8.9 Score=38.98 Aligned_cols=53 Identities=13% Similarity=0.181 Sum_probs=28.1
Q ss_pred CCCEEEEecCCChhHHHHH-HHHHh--cCCeEEEEc-c-cHHHHHHH-HHHHHHcCCCE
Q 035988 106 GRDVLVIMAAGGGKSLCYQ-LPAVL--REGIALVVS-P-LLSLIQDQ-VMCLAALGIPA 158 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~-lpal~--~~~~~lvi~-P-t~~L~~q~-~~~l~~~gi~~ 158 (692)
++-+++.+|+|+|||.... +.... .+++++++. . .+.-+.++ ...+...|+..
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~ 162 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATV 162 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEE
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcE
Confidence 3457899999999996543 33332 245555543 2 33333333 33344455543
No 247
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=80.83 E-value=5.4 Score=45.35 Aligned_cols=81 Identities=19% Similarity=0.180 Sum_probs=68.3
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhh
Q 035988 130 REGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHH 209 (692)
Q Consensus 130 ~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~ 209 (692)
.+.++||.++++.-++...+.|...|+++..++|+.+..++..+...+..+ ..+|+|+|.- +. ....
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g--~~~VLvaT~~-l~----------~GlD 504 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLG--HYDCLVGINL-LR----------EGLD 504 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTT--SCSEEEESCC-CC----------TTCC
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcC--CceEEEccCh-hh----------cCcc
Confidence 467999999999999999999999999999999999999999998888877 8999999833 32 2335
Q ss_pred cCCceEEEEeCccc
Q 035988 210 AGRLSLISIDEAHC 223 (692)
Q Consensus 210 ~~~l~~iVIDEaH~ 223 (692)
+..++++|+=+++.
T Consensus 505 ip~v~lVI~~d~d~ 518 (664)
T 1c4o_A 505 IPEVSLVAILDADK 518 (664)
T ss_dssp CTTEEEEEETTTTS
T ss_pred CCCCCEEEEeCCcc
Confidence 56788888888765
No 248
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=80.27 E-value=6.1 Score=41.04 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=26.2
Q ss_pred HHHHHHc-----CCCEEEEecCCChhHHHH-HHHHHh--c------CCeEEEEcc
Q 035988 99 IINAVLS-----GRDVLVIMAAGGGKSLCY-QLPAVL--R------EGIALVVSP 139 (692)
Q Consensus 99 ai~~il~-----g~dviv~apTGsGKTl~~-~lpal~--~------~~~~lvi~P 139 (692)
.++.++. |+-+.+.+|+|+|||... ++.... . ++.++++.-
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~ 173 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT 173 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEES
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeC
Confidence 4566664 456889999999999544 443333 1 256676653
No 249
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=79.79 E-value=10 Score=48.22 Aligned_cols=96 Identities=16% Similarity=0.171 Sum_probs=52.6
Q ss_pred HHHHHHc------CCCEEEEecCCChhHHHHH-HHH--HhcCCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhH
Q 035988 99 IINAVLS------GRDVLVIMAAGGGKSLCYQ-LPA--VLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKED 169 (692)
Q Consensus 99 ai~~il~------g~dviv~apTGsGKTl~~~-lpa--l~~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~ 169 (692)
.++.++. |+-+++.+|+|+|||...+ +.+ ...+..+++++---++-.. ..+.+|+.
T Consensus 370 ~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~~~~---~a~~lGvd------------ 434 (2050)
T 3cmu_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI---YARKLGVD------------ 434 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHH---HHHHTTCC------------
T ss_pred HHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCHHHH---HHHHcCCC------------
Confidence 4566664 4668999999999996543 211 1234566666543322211 13344432
Q ss_pred HHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCccccc
Q 035988 170 EKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCS 225 (692)
Q Consensus 170 ~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~ 225 (692)
.-+++|..|..+. .+.+.+........+++||||....+.
T Consensus 435 -------------~~~L~I~~~~~~e---~il~~~~~lv~~~~~~lIVIDSL~al~ 474 (2050)
T 3cmu_A 435 -------------IDNLLCSQPDTGE---QALEICDALARSGAVDVIVVDSVAALT 474 (2050)
T ss_dssp -------------TTTCEEECCSSHH---HHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred -------------HHHeEEeCCCCHH---HHHHHHHHHHHhcCCcEEEECCHHHhh
Confidence 1234455554332 233333332223579999999999886
No 250
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=79.24 E-value=1.9 Score=46.39 Aligned_cols=70 Identities=7% Similarity=0.004 Sum_probs=56.5
Q ss_pred chHHHHHHHHHHHHHHHHHhCCCCceEeccHHHHHHHHHcCC---CChhhcchhhhhhc--ccchhhhhhhHHHHHHHHh
Q 035988 573 TSSALEFELDELRKELASISGGILPHSVLSSQLIRLISARKP---STMEEASSNHLEKI--IGKLKTGKYGSRILEVISK 647 (692)
Q Consensus 573 ~~~~l~~~l~~~r~~~a~~~~~~~~~~i~~~~~l~~~~~~~p---~~~~~~~~~~l~~i--~g~~k~~~~g~~~l~~~~~ 647 (692)
...++++.|+.+++++|++ .|+||=+|++.+.|+.++-..| ..+.+ ++.. +.....+-+|+.+++++..
T Consensus 361 ~~~~~~~~l~~~~~~~a~~-~~~~~~~l~~~~~l~~l~~~~~~~~~~~~~-----~l~~~g~~~Wr~~~~~~~~~~~~~~ 434 (440)
T 3cym_A 361 ERLQVLNRVRKAVSQIAED-TRTPVEIVIKPQYLRNLCWTDEPRKRDVAR-----FLSEQGARDWQVSLVAESVSRAIEG 434 (440)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HTCCHHHHSCHHHHHHHHCSSCGGGCCHHH-----HHHHHTCCHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHH-cCCCHHHcCCHHHHHHHhCcCCCChhhHhH-----HHhhccCCCchHHHHHHHHHHHHhc
Confidence 3567999999999999999 8999999999999999994322 23344 4444 6788999999999999975
Q ss_pred h
Q 035988 648 C 648 (692)
Q Consensus 648 ~ 648 (692)
+
T Consensus 435 ~ 435 (440)
T 3cym_A 435 H 435 (440)
T ss_dssp -
T ss_pred c
Confidence 4
No 251
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=78.84 E-value=16 Score=36.80 Aligned_cols=20 Identities=15% Similarity=0.375 Sum_probs=15.8
Q ss_pred cCCCEEEEecCCChhHHHHH
Q 035988 105 SGRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~~ 124 (692)
.++-+.+++|+|+|||....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35668899999999996543
No 252
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=78.76 E-value=8.8 Score=44.48 Aligned_cols=61 Identities=13% Similarity=0.157 Sum_probs=32.0
Q ss_pred CccccccccCCCCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCChhHHHHHH
Q 035988 63 STAVENWSGTFEWDSRADDVRLNVFGIPAYRANQQEIINAVLSGRDVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 63 ~~~~~~w~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~~l 125 (692)
..|-..|..-.++ ....+.|.+..-+..-+|.+-.-+ .+...+.+++.+|+|+|||+.+-.
T Consensus 470 ~~p~v~w~diggl-~~~k~~l~e~v~~p~~~p~~f~~~-g~~~~~gvLl~GPPGtGKT~lAka 530 (806)
T 3cf2_A 470 EVPQVTWEDIGGL-EDVKRELQELVQYPVEHPDKFLKF-GMTPSKGVLFYGPPGCGKTLLAKA 530 (806)
T ss_dssp BCCCCCSTTCCSC-HHHHHHHTTTTTTTTTCSGGGSSS-CCCCCSCCEEESSTTSSHHHHHHH
T ss_pred cCCCCCHHHhCCH-HHHHHHHHHHHHhhhhCHHHHHhc-CCCCCceEEEecCCCCCchHHHHH
Confidence 4455567743333 455556665533322222111000 001235799999999999986543
No 253
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=78.75 E-value=5.3 Score=41.52 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=17.4
Q ss_pred cCCCEEEEecCCChhHHHHHH
Q 035988 105 SGRDVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~~l 125 (692)
....+++.+|+|+|||..+..
T Consensus 50 ~~~~vll~GppGtGKT~la~~ 70 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAET 70 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 346799999999999987644
No 254
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=78.61 E-value=4.3 Score=44.97 Aligned_cols=77 Identities=12% Similarity=0.076 Sum_probs=63.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHc---CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhh
Q 035988 131 EGIALVVSPLLSLIQDQVMCLAAL---GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKC 207 (692)
Q Consensus 131 ~~~~lvi~Pt~~L~~q~~~~l~~~---gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~ 207 (692)
+..+||.++++.-+......+... ++.+..++|+.+..++..+...+..+ ..+|+|+|.- + ...
T Consensus 339 ~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g--~~~vLvaT~~-~----------~~G 405 (563)
T 3i5x_A 339 NYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKD--ESGILVCTDV-G----------ARG 405 (563)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHC--SSEEEEECGG-G----------TSS
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcC--CCCEEEEcch-h----------hcC
Confidence 569999999999999999999887 89999999999999999999999887 8999999963 2 223
Q ss_pred hhcCCceEEEEeC
Q 035988 208 HHAGRLSLISIDE 220 (692)
Q Consensus 208 ~~~~~l~~iVIDE 220 (692)
.++.++++||.-.
T Consensus 406 iDip~v~~VI~~~ 418 (563)
T 3i5x_A 406 MDFPNVHEVLQIG 418 (563)
T ss_dssp CCCTTCCEEEEES
T ss_pred CCcccCCEEEEEC
Confidence 3455677777543
No 255
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=78.54 E-value=5.2 Score=47.73 Aligned_cols=82 Identities=15% Similarity=0.045 Sum_probs=67.2
Q ss_pred cCCeEEEEcccHHHHHHHHHHHH-HcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhh
Q 035988 130 REGIALVVSPLLSLIQDQVMCLA-ALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCH 208 (692)
Q Consensus 130 ~~~~~lvi~Pt~~L~~q~~~~l~-~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~ 208 (692)
.+.++||.++++.-+......|. ..|+++..++|+.+..++..+...+..+.+.++|+|+| ..+. ...
T Consensus 502 ~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT-~v~~----------~Gl 570 (968)
T 3dmq_A 502 RSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCS-EIGS----------EGR 570 (968)
T ss_dssp SSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECS-CCTT----------CSS
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEec-chhh----------cCC
Confidence 46899999999999999999999 46999999999999999999999999884459999999 5442 234
Q ss_pred hcCCceEEEEeCcc
Q 035988 209 HAGRLSLISIDEAH 222 (692)
Q Consensus 209 ~~~~l~~iVIDEaH 222 (692)
++..++.||+-+..
T Consensus 571 Dl~~~~~VI~~d~p 584 (968)
T 3dmq_A 571 NFQFASHMVMFDLP 584 (968)
T ss_dssp CCTTCCEEECSSCC
T ss_pred CcccCcEEEEecCC
Confidence 56677888865554
No 256
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=78.51 E-value=3.3 Score=39.87 Aligned_cols=71 Identities=14% Similarity=0.165 Sum_probs=51.9
Q ss_pred CCCceEEEEeccchHHHHHHHHHHC-----CCceeEeccCCCHHHHHHHHHHHhcCCCcEEEecccc------ccccCCC
Q 035988 314 NSESGIVYCFSRKECEQVAQELRQR-----GISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAF------GMGINKP 382 (692)
Q Consensus 314 ~~~~~IIf~~s~~~~e~l~~~L~~~-----g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~------~~GIDip 382 (692)
.+.++||.|+++.-+.++++.++.. ++.+..++|+.+..++.... ...+|+|+|.-- ...++..
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccc
Confidence 4568999999999999999998864 67889999999876654433 357899999731 2234555
Q ss_pred CccEEEE
Q 035988 383 DVRFVIH 389 (692)
Q Consensus 383 ~v~~VI~ 389 (692)
++++||.
T Consensus 166 ~~~~lVi 172 (230)
T 2oxc_A 166 SIRLFIL 172 (230)
T ss_dssp GCCEEEE
T ss_pred cCCEEEe
Confidence 6666653
No 257
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=78.51 E-value=4.3 Score=45.27 Aligned_cols=78 Identities=12% Similarity=0.075 Sum_probs=64.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHc---CCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhh
Q 035988 131 EGIALVVSPLLSLIQDQVMCLAAL---GIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKC 207 (692)
Q Consensus 131 ~~~~lvi~Pt~~L~~q~~~~l~~~---gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~ 207 (692)
+.++||.++++.-+...+..|+.. ++.+..++|+.+..++..+...+..+ ..+|+|+|.- + ...
T Consensus 288 ~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g--~~~vLVaT~~-~----------~~G 354 (579)
T 3sqw_A 288 NYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKD--ESGILVCTDV-G----------ARG 354 (579)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHC--SSEEEEECGG-G----------TSS
T ss_pred CCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcC--CCeEEEEcch-h----------hcC
Confidence 569999999999999999999987 89999999999999999999999887 8999999964 2 223
Q ss_pred hhcCCceEEEEeCc
Q 035988 208 HHAGRLSLISIDEA 221 (692)
Q Consensus 208 ~~~~~l~~iVIDEa 221 (692)
..+.++++||.-..
T Consensus 355 iDip~v~~VI~~~~ 368 (579)
T 3sqw_A 355 MDFPNVHEVLQIGV 368 (579)
T ss_dssp CCCTTCCEEEEESC
T ss_pred CCcccCCEEEEcCC
Confidence 35566777775543
No 258
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=78.06 E-value=6.2 Score=37.55 Aligned_cols=20 Identities=20% Similarity=0.104 Sum_probs=16.0
Q ss_pred cCCCEEEEecCCChhHHHHH
Q 035988 105 SGRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~~ 124 (692)
.|.-+.+.+|+|+|||....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~ 43 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAH 43 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35668999999999997543
No 259
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=77.34 E-value=44 Score=33.49 Aligned_cols=34 Identities=18% Similarity=0.202 Sum_probs=21.1
Q ss_pred cCCCEEEEecCCChhHHHHH-HHHHh--cCCeEEEEc
Q 035988 105 SGRDVLVIMAAGGGKSLCYQ-LPAVL--REGIALVVS 138 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~~-lpal~--~~~~~lvi~ 138 (692)
.++-+.+.+++|+|||.... +..+. .+++++++-
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~ 133 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 45567788999999996543 33332 245555543
No 260
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=76.41 E-value=14 Score=40.22 Aligned_cols=31 Identities=16% Similarity=0.216 Sum_probs=19.8
Q ss_pred CCEEEEecCCChhHHHHH-HHHHh--cCCeEEEE
Q 035988 107 RDVLVIMAAGGGKSLCYQ-LPAVL--REGIALVV 137 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~-lpal~--~~~~~lvi 137 (692)
.-+.+++|+|+|||...- |..+. .++.+++.
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 347899999999996543 32222 24566654
No 261
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=75.64 E-value=3.5 Score=41.99 Aligned_cols=18 Identities=22% Similarity=0.239 Sum_probs=15.7
Q ss_pred CCCEEEEecCCChhHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCY 123 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~ 123 (692)
++.+++.+|||+|||...
T Consensus 152 ~~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 578999999999999754
No 262
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=75.54 E-value=3.5 Score=39.56 Aligned_cols=72 Identities=15% Similarity=0.207 Sum_probs=47.7
Q ss_pred CCCceEEEEeccchHHHHHHHHHHC---CCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccc------cccccCCCCc
Q 035988 314 NSESGIVYCFSRKECEQVAQELRQR---GISADYYHADMDINAREKVHMRWSKNKLQVIVGTVA------FGMGINKPDV 384 (692)
Q Consensus 314 ~~~~~IIf~~s~~~~e~l~~~L~~~---g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~------~~~GIDip~v 384 (692)
.+.++||.++++.-+.++++.++.. ++.+..++|+.+...+... +. ...+|+|+|.- ....+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 5677999999999999999999874 7788889998775544332 22 34789999962 2234556666
Q ss_pred cEEEE
Q 035988 385 RFVIH 389 (692)
Q Consensus 385 ~~VI~ 389 (692)
++||.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 66664
No 263
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=75.31 E-value=6.1 Score=36.96 Aligned_cols=73 Identities=14% Similarity=0.120 Sum_probs=51.9
Q ss_pred CCCceEEEEeccchHHHHHHHHHHC--CCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccc-----c-ccccCCCCcc
Q 035988 314 NSESGIVYCFSRKECEQVAQELRQR--GISADYYHADMDINAREKVHMRWSKNKLQVIVGTVA-----F-GMGINKPDVR 385 (692)
Q Consensus 314 ~~~~~IIf~~s~~~~e~l~~~L~~~--g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~-----~-~~GIDip~v~ 385 (692)
.+.++||.|+++.-+.++++.++.. ++.+..++|+.+.......+. ...+|+|+|.- + ...++..+++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 4668999999999999999999876 467888999887554433332 25789999962 1 2235566677
Q ss_pred EEEEe
Q 035988 386 FVIHH 390 (692)
Q Consensus 386 ~VI~~ 390 (692)
+||.-
T Consensus 147 ~iViD 151 (207)
T 2gxq_A 147 VAVLD 151 (207)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 76643
No 264
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=74.96 E-value=6.6 Score=36.71 Aligned_cols=72 Identities=14% Similarity=0.118 Sum_probs=50.5
Q ss_pred CCCceEEEEeccchHHHHHHHHHHC-----CCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccc-----ccc-ccCCC
Q 035988 314 NSESGIVYCFSRKECEQVAQELRQR-----GISADYYHADMDINAREKVHMRWSKNKLQVIVGTVA-----FGM-GINKP 382 (692)
Q Consensus 314 ~~~~~IIf~~s~~~~e~l~~~L~~~-----g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~-----~~~-GIDip 382 (692)
.+.++||.|+++.-+.++++.++.. +..+..++|+.+..+.... ..+..+|+|+|.- +.. .++..
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~i~v~T~~~l~~~~~~~~~~~~ 145 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR----LDDTVHVVIATPGRILDLIKKGVAKVD 145 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH----TTSCCSEEEECHHHHHHHHHTTCSCCT
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh----cCCCCCEEEeCHHHHHHHHHcCCcCcc
Confidence 4567999999999999999888764 5778899999886544322 2356789999962 222 23455
Q ss_pred CccEEEE
Q 035988 383 DVRFVIH 389 (692)
Q Consensus 383 ~v~~VI~ 389 (692)
++++||.
T Consensus 146 ~~~~lVi 152 (206)
T 1vec_A 146 HVQMIVL 152 (206)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 6666663
No 265
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=74.56 E-value=3 Score=39.90 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEecCCChhHHHH
Q 035988 91 AYRANQQEIINAVLSGRDVLVIMAAGGGKSLCY 123 (692)
Q Consensus 91 ~~r~~Q~~ai~~il~g~dviv~apTGsGKTl~~ 123 (692)
..+..|..++..+-.|.-+.+.+|.|+|||...
T Consensus 7 pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 7 PKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred cCCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 344567888999888999999999999999754
No 266
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=74.20 E-value=2.4 Score=44.59 Aligned_cols=60 Identities=10% Similarity=0.101 Sum_probs=48.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChh
Q 035988 131 EGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPE 192 (692)
Q Consensus 131 ~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe 192 (692)
.+++||.++++.-+....+.+...++.+..++|+.+..++..+...+..+ ..+|+|+|.-
T Consensus 280 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g--~~~vlv~T~~ 339 (414)
T 3eiq_A 280 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSG--SSRVLITTDL 339 (414)
T ss_dssp CSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC-----CEEECSS
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcC--CCcEEEECCc
Confidence 46899999999999999999999999999999999999998888888776 7899999953
No 267
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=73.13 E-value=9.3 Score=35.16 Aligned_cols=15 Identities=20% Similarity=0.020 Sum_probs=12.4
Q ss_pred CEEEEecCCChhHHH
Q 035988 108 DVLVIMAAGGGKSLC 122 (692)
Q Consensus 108 dviv~apTGsGKTl~ 122 (692)
-+.+.++.|||||..
T Consensus 6 ~i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL 20 (169)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367889999999973
No 268
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=73.03 E-value=2.3 Score=46.76 Aligned_cols=30 Identities=10% Similarity=0.091 Sum_probs=20.8
Q ss_pred CHHHHHHHHH-HHcCCCEEEEecCCChhHHH
Q 035988 93 RANQQEIINA-VLSGRDVLVIMAAGGGKSLC 122 (692)
Q Consensus 93 r~~Q~~ai~~-il~g~dviv~apTGsGKTl~ 122 (692)
.+.+..-+.. +-.|..+++.+|||||||..
T Consensus 246 ~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 246 PSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred CHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 3434443433 34678899999999999974
No 269
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=72.83 E-value=37 Score=32.93 Aligned_cols=17 Identities=24% Similarity=0.331 Sum_probs=14.4
Q ss_pred CEEEEecCCChhHHHHH
Q 035988 108 DVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 108 dviv~apTGsGKTl~~~ 124 (692)
-+++.+++|||||....
T Consensus 34 ~i~l~G~~GsGKSTla~ 50 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHR 50 (253)
T ss_dssp EEEEESCGGGTTHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48899999999997654
No 270
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.56 E-value=1.8 Score=46.50 Aligned_cols=19 Identities=26% Similarity=0.385 Sum_probs=16.1
Q ss_pred CCCEEEEecCCChhHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~ 124 (692)
.+.+|+.+|+|+|||+.+-
T Consensus 215 prGvLLyGPPGTGKTllAk 233 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLAR 233 (434)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHH
Confidence 3679999999999998653
No 271
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=72.42 E-value=2.6 Score=44.03 Aligned_cols=26 Identities=19% Similarity=0.479 Sum_probs=20.8
Q ss_pred HHHHHHcCCC--EEEEecCCChhHHHHH
Q 035988 99 IINAVLSGRD--VLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 99 ai~~il~g~d--viv~apTGsGKTl~~~ 124 (692)
+++.++.|.+ +|+.+.||||||.+..
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM~ 123 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTMM 123 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEeC
Confidence 4555677877 7899999999998764
No 272
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=72.39 E-value=7 Score=38.07 Aligned_cols=72 Identities=10% Similarity=0.090 Sum_probs=50.9
Q ss_pred CCCceEEEEeccchHHHHHHHHHHC----CCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccc-----c-ccccCCCC
Q 035988 314 NSESGIVYCFSRKECEQVAQELRQR----GISADYYHADMDINAREKVHMRWSKNKLQVIVGTVA-----F-GMGINKPD 383 (692)
Q Consensus 314 ~~~~~IIf~~s~~~~e~l~~~L~~~----g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~-----~-~~GIDip~ 383 (692)
.+.++||.|+++.-+.++++.++.. ++.+..++|+.+.......+ ....+|+|+|.- + ...+++.+
T Consensus 99 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~ 174 (253)
T 1wrb_A 99 AYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEF 174 (253)
T ss_dssp BCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhh
Confidence 3468999999999999998888764 56788899988755443322 346789999963 1 22356667
Q ss_pred ccEEEE
Q 035988 384 VRFVIH 389 (692)
Q Consensus 384 v~~VI~ 389 (692)
+++||.
T Consensus 175 ~~~lVi 180 (253)
T 1wrb_A 175 CKYIVL 180 (253)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 777664
No 273
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=71.77 E-value=5.8 Score=42.46 Aligned_cols=56 Identities=13% Similarity=0.100 Sum_probs=47.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChh
Q 035988 131 EGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPE 192 (692)
Q Consensus 131 ~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe 192 (692)
++.+||++|++.-++..++.|++.|.++..++|. .+..++..+..+ ..+|+|+|.-
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g--~~~vLVaT~v 226 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSE--KWDFVITTDI 226 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHS--CCSEEEECGG
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCC--CCeEEEECch
Confidence 5689999999999999999999999999999986 345566777777 8999999953
No 274
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=71.71 E-value=3.3 Score=44.23 Aligned_cols=31 Identities=23% Similarity=0.310 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHHc--CCCEEEEecCCChhHHH
Q 035988 92 YRANQQEIINAVLS--GRDVLVIMAAGGGKSLC 122 (692)
Q Consensus 92 ~r~~Q~~ai~~il~--g~dviv~apTGsGKTl~ 122 (692)
+.+.+..++..++. |.-+++.+|||||||..
T Consensus 151 ~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 151 MTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp CCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred CCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 45667777777664 33478999999999964
No 275
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=71.59 E-value=5.4 Score=38.59 Aligned_cols=73 Identities=10% Similarity=0.181 Sum_probs=45.2
Q ss_pred CCCceEEEEeccchHHHHHHHHHHC----CCceeEeccCCCHHHHHHHHHHHhcCCCcEEEecc-----cccc-ccCCCC
Q 035988 314 NSESGIVYCFSRKECEQVAQELRQR----GISADYYHADMDINAREKVHMRWSKNKLQVIVGTV-----AFGM-GINKPD 383 (692)
Q Consensus 314 ~~~~~IIf~~s~~~~e~l~~~L~~~----g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~-----~~~~-GIDip~ 383 (692)
.+.++||.++++.-+.++++.++.. +..+..++|+.+... ..+.+..+..+|+|+|. .+.. .++..+
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 4568999999999999999998765 567778888765432 23445567789999994 2222 355666
Q ss_pred ccEEEE
Q 035988 384 VRFVIH 389 (692)
Q Consensus 384 v~~VI~ 389 (692)
+++||.
T Consensus 174 ~~~lVi 179 (237)
T 3bor_A 174 IKMFVL 179 (237)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 776664
No 276
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=71.39 E-value=3.9 Score=41.82 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=18.8
Q ss_pred HHHcCCCEEEEecCCChhHHHHH
Q 035988 102 AVLSGRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 102 ~il~g~dviv~apTGsGKTl~~~ 124 (692)
.+..+.++++.+|+|+|||....
T Consensus 42 ~l~~~~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 42 GICTGGHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp HHHHTCCEEEESCCCHHHHHHHH
T ss_pred HHHcCCeEEEECCCCCcHHHHHH
Confidence 44568899999999999997553
No 277
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=71.15 E-value=83 Score=31.00 Aligned_cols=185 Identities=10% Similarity=0.067 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeC
Q 035988 141 LSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDE 220 (692)
Q Consensus 141 ~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDE 220 (692)
..+..-..+.+++.|..+.+................+... .++-+|..|..........+.+.. ..+.+|++|.
T Consensus 18 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~--~vdgiIi~~~~~~~~~~~~~~~~~----~~iPvV~~~~ 91 (313)
T 3m9w_A 18 QKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINR--GVDVLVIIPYNGQVLSNVVKEAKQ----EGIKVLAYDR 91 (313)
T ss_dssp HHHHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHHT--TCSEEEEECSSTTSCHHHHHHHHT----TTCEEEEESS
T ss_pred HHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHc--CCCEEEEeCCChhhhHHHHHHHHH----CCCeEEEECC
Confidence 4566667777888899888888776666555566666554 677666665433221233333332 3678888886
Q ss_pred ccccc----ccCCCchH-HHHHHHHHHhhCCCCCEEEEecccchhhHH-H---HHHHhcccceEEEeccCCCCcceEEE-
Q 035988 221 AHCCS----QWGHDFRP-DYKNLGILKTQFPDVPMMALTATATQKVQN-D---LMEMLHIRKCIKFVSTINRPNLFYMV- 290 (692)
Q Consensus 221 aH~l~----~~g~~fr~-~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~-~---i~~~l~~~~~~~~~~~~~r~~l~~~v- 290 (692)
...-. ..+.+... .+.....+........+.+++......... . +.+.+.-. ...+++....
T Consensus 92 ~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~G~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~--------~~~~~~~~~~~ 163 (313)
T 3m9w_A 92 MINDADIDFYISFDNEKVGELQAKALVDIVPQGNYFLMGGSPVDNNAKLFRAGQMKVLKPY--------VDSGKIKVVGD 163 (313)
T ss_dssp CCTTSCCSEEEEECHHHHHHHHHHHHHHHCSSEEEEEEESCTTCHHHHHHHHHHHHHHHHH--------HHTTSEEEEEE
T ss_pred cCCCCCceEEEecCHHHHHHHHHHHHHHhCCCCcEEEEECCCCCccHHHHHHHHHHHHHhh--------ccCCCEEEEee
Confidence 43211 11222222 222223444355666777777654332211 1 11111110 0001111110
Q ss_pred -eeccCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCc
Q 035988 291 -REKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGIS 341 (692)
Q Consensus 291 -~~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~ 341 (692)
.............+.+++... ...+.-|||.+-..+..+.+.|++.|++
T Consensus 164 ~~~~~~~~~~~~~~~~~~l~~~--~~~~~ai~~~~d~~a~g~~~al~~~G~~ 213 (313)
T 3m9w_A 164 QWVDGWLPENALKIMENALTAN--NNKIDAVVASNDATAGGAIQALSAQGLS 213 (313)
T ss_dssp EECGGGCHHHHHHHHHHHHHHT--TTCCCEEEESSHHHHHHHHHHHHTTTCT
T ss_pred ccCCCcCHHHHHHHHHHHHHhC--CCCeeEEEECCCchHHHHHHHHHHcCCC
Confidence 011112233445566666643 2567889999999999999999988874
No 278
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=71.05 E-value=2.9 Score=43.08 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=21.0
Q ss_pred HHHHHHcCCC--EEEEecCCChhHHHHH
Q 035988 99 IINAVLSGRD--VLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 99 ai~~il~g~d--viv~apTGsGKTl~~~ 124 (692)
+++.++.|.+ +++.+.||||||.+..
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 96 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTME 96 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEec
Confidence 4556678887 7899999999999764
No 279
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=70.53 E-value=23 Score=36.76 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=20.8
Q ss_pred CCCEEEEecCCChhHHHHH-HHHHh--cCCeEEEEc
Q 035988 106 GRDVLVIMAAGGGKSLCYQ-LPAVL--REGIALVVS 138 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~-lpal~--~~~~~lvi~ 138 (692)
|.-+.+++|+|+|||...- +..+. .++.+++..
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g 192 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 192 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEec
Confidence 4557899999999996543 33332 245555543
No 280
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=70.47 E-value=84 Score=30.74 Aligned_cols=179 Identities=9% Similarity=0.045 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCc
Q 035988 142 SLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEA 221 (692)
Q Consensus 142 ~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEa 221 (692)
.++....+.+.+.|..+.+................+... .++-+|..|..... ...+.+.. ..+.+|++|-.
T Consensus 29 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdGiI~~~~~~~~--~~~~~l~~----~~iPvV~i~~~ 100 (295)
T 3hcw_A 29 NVLLGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQR--MVDAFILLYSKEND--PIKQMLID----ESMPFIVIGKP 100 (295)
T ss_dssp HHHHHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTT--CCSEEEESCCCTTC--HHHHHHHH----TTCCEEEESCC
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhC--CcCEEEEcCcccCh--HHHHHHHh----CCCCEEEECCC
Confidence 455556667777788776665544444344445555544 56666665543221 23333332 36778888853
Q ss_pred cc-----ccccCCCc-hHHHHHHHHHHhhCCCCCEEEEecccchh-hHHHH---HHHhcccceEEEeccCCCCcceEEEe
Q 035988 222 HC-----CSQWGHDF-RPDYKNLGILKTQFPDVPMMALTATATQK-VQNDL---MEMLHIRKCIKFVSTINRPNLFYMVR 291 (692)
Q Consensus 222 H~-----l~~~g~~f-r~~~~~l~~l~~~~~~~~~i~lSAT~~~~-~~~~i---~~~l~~~~~~~~~~~~~r~~l~~~v~ 291 (692)
.. +...+.+. ...+.....|.. .....+.+++...... ..... .+.+.-... ...+.
T Consensus 101 ~~~~~~~~~~V~~D~~~~~~~a~~~L~~-~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~------------~~~~~ 167 (295)
T 3hcw_A 101 TSDIDHQFTHIDNDNILASENLTRHVIE-QGVDELIFITEKGNFEVSKDRIQGFETVASQFNL------------DYQII 167 (295)
T ss_dssp CSSGGGGSCEEEECHHHHHHHHHHHHHH-HCCSEEEEEEESSCCHHHHHHHHHHHHHHHHTTC------------EEEEE
T ss_pred CccccCCceEEecCcHHHHHHHHHHHHH-cCCccEEEEcCCccchhHHHHHHHHHHHHHHcCC------------CeeEE
Confidence 21 11111122 222222233333 3455666666544321 11111 111211110 00111
Q ss_pred eccCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCc
Q 035988 292 EKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGIS 341 (692)
Q Consensus 292 ~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~ 341 (692)
............+.+++...-....+.-|||.+...+..+.+.|++.|+.
T Consensus 168 ~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~~~~d~~A~g~~~al~~~g~~ 217 (295)
T 3hcw_A 168 ETSNEREVILNYMQNLHTRLKDPNIKQAIISLDAMLHLAILSVLYELNIE 217 (295)
T ss_dssp EECSCHHHHHHHHHHHHHHHTCTTSCEEEEESSHHHHHHHHHHHHHTTCC
T ss_pred eccCCHHHHHHHHHHHHhhcccCCCCcEEEECChHHHHHHHHHHHHcCCC
Confidence 11122233345556666544212467889999988888899999887764
No 281
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=70.46 E-value=2.8 Score=43.65 Aligned_cols=26 Identities=19% Similarity=0.428 Sum_probs=20.9
Q ss_pred HHHHHHcCCC--EEEEecCCChhHHHHH
Q 035988 99 IINAVLSGRD--VLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 99 ai~~il~g~d--viv~apTGsGKTl~~~ 124 (692)
+++.++.|.+ +++.+.||||||.+.+
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 96 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTMM 96 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEEe
Confidence 4556778887 7889999999998763
No 282
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=70.15 E-value=9.4 Score=37.56 Aligned_cols=72 Identities=13% Similarity=0.119 Sum_probs=51.9
Q ss_pred CCCceEEEEeccchHHHHHHHHHHC----CCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccc------c-ccccCCC
Q 035988 314 NSESGIVYCFSRKECEQVAQELRQR----GISADYYHADMDINAREKVHMRWSKNKLQVIVGTVA------F-GMGINKP 382 (692)
Q Consensus 314 ~~~~~IIf~~s~~~~e~l~~~L~~~----g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~------~-~~GIDip 382 (692)
.+.++||.++++.-+.++++.++.. +..+..++|+.+....... +..+ .+|+|+|.- . ..++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 4667999999999999999988874 5677888998876554433 3334 789999951 1 2246677
Q ss_pred CccEEEE
Q 035988 383 DVRFVIH 389 (692)
Q Consensus 383 ~v~~VI~ 389 (692)
++++||.
T Consensus 201 ~l~~lVi 207 (262)
T 3ly5_A 201 NLQCLVI 207 (262)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 7777764
No 283
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=70.12 E-value=2.9 Score=44.37 Aligned_cols=26 Identities=15% Similarity=0.406 Sum_probs=20.5
Q ss_pred HHHHHHcCCC--EEEEecCCChhHHHHH
Q 035988 99 IINAVLSGRD--VLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 99 ai~~il~g~d--viv~apTGsGKTl~~~ 124 (692)
++..++.|.+ +|+.+.||||||.+..
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEee
Confidence 4455677876 7899999999999764
No 284
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=70.00 E-value=3.2 Score=43.56 Aligned_cols=26 Identities=23% Similarity=0.534 Sum_probs=20.7
Q ss_pred HHHHHHcCCC--EEEEecCCChhHHHHH
Q 035988 99 IINAVLSGRD--VLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 99 ai~~il~g~d--viv~apTGsGKTl~~~ 124 (692)
++..++.|.+ +|+.+.||||||.+..
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 120 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYTME 120 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEeEe
Confidence 4556678887 6899999999998753
No 285
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=69.71 E-value=2.9 Score=43.41 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=20.1
Q ss_pred HHHHHHcCCC--EEEEecCCChhHHHH
Q 035988 99 IINAVLSGRD--VLVIMAAGGGKSLCY 123 (692)
Q Consensus 99 ai~~il~g~d--viv~apTGsGKTl~~ 123 (692)
+++.++.|.+ +++.+.||||||.+.
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 4455677887 689999999999975
No 286
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=69.52 E-value=3.3 Score=43.18 Aligned_cols=26 Identities=23% Similarity=0.456 Sum_probs=21.0
Q ss_pred HHHHHHcCCC--EEEEecCCChhHHHHH
Q 035988 99 IINAVLSGRD--VLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 99 ai~~il~g~d--viv~apTGsGKTl~~~ 124 (692)
+++.++.|.+ +++.+.||||||.+.+
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 111 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTMM 111 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHHT
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEEe
Confidence 5566778887 6889999999999763
No 287
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=69.35 E-value=20 Score=36.32 Aligned_cols=32 Identities=28% Similarity=0.332 Sum_probs=19.9
Q ss_pred CCCEEEEecCCChhHHHHH-HHHHhc--CCeEEEE
Q 035988 106 GRDVLVIMAAGGGKSLCYQ-LPAVLR--EGIALVV 137 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~-lpal~~--~~~~lvi 137 (692)
+.-+.+++|+|+|||...- +..+.. ++.+++.
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~ 136 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFC 136 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 4557889999999996543 333322 3455443
No 288
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=69.23 E-value=3.3 Score=43.09 Aligned_cols=25 Identities=32% Similarity=0.574 Sum_probs=20.3
Q ss_pred HHHHHHcCCC--EEEEecCCChhHHHH
Q 035988 99 IINAVLSGRD--VLVIMAAGGGKSLCY 123 (692)
Q Consensus 99 ai~~il~g~d--viv~apTGsGKTl~~ 123 (692)
.++.++.|.+ +++.+.||||||.+.
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 4455678887 789999999999875
No 289
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=69.22 E-value=3.3 Score=43.37 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=20.3
Q ss_pred HHHHHHcCCC--EEEEecCCChhHHHH
Q 035988 99 IINAVLSGRD--VLVIMAAGGGKSLCY 123 (692)
Q Consensus 99 ai~~il~g~d--viv~apTGsGKTl~~ 123 (692)
+++.++.|.+ +++.+.||||||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceEE
Confidence 4555678887 789999999999975
No 290
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=69.08 E-value=3.4 Score=43.11 Aligned_cols=26 Identities=19% Similarity=0.479 Sum_probs=20.7
Q ss_pred HHHHHHcCCC--EEEEecCCChhHHHHH
Q 035988 99 IINAVLSGRD--VLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 99 ai~~il~g~d--viv~apTGsGKTl~~~ 124 (692)
+++.++.|.+ +++.+.||||||.+..
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM~ 122 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTMM 122 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEec
Confidence 4556678887 6889999999998753
No 291
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=68.90 E-value=3.6 Score=34.42 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=34.2
Q ss_pred hCCCCCceEEEEeccchHHHHHHHHHHCCCc-eeEeccCCC
Q 035988 311 SYPNSESGIVYCFSRKECEQVAQELRQRGIS-ADYYHADMD 350 (692)
Q Consensus 311 ~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~-v~~~h~~~~ 350 (692)
..+.+.+++|||.+-..+...+..|+..|+. +..+.||+.
T Consensus 48 ~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 48 SLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp HSCTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred cCCCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 3457789999999988899999999999995 888899863
No 292
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=68.81 E-value=2.8 Score=43.82 Aligned_cols=26 Identities=23% Similarity=0.539 Sum_probs=20.7
Q ss_pred HHHHHHcCCC--EEEEecCCChhHHHHH
Q 035988 99 IINAVLSGRD--VLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 99 ai~~il~g~d--viv~apTGsGKTl~~~ 124 (692)
+++.++.|.+ +|+.+.||||||.+..
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 107 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTME 107 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEEe
Confidence 4556677877 7899999999999764
No 293
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=68.72 E-value=3.4 Score=42.63 Aligned_cols=27 Identities=15% Similarity=0.460 Sum_probs=22.4
Q ss_pred HHHHHHHcCCC--EEEEecCCChhHHHHH
Q 035988 98 EIINAVLSGRD--VLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 98 ~ai~~il~g~d--viv~apTGsGKTl~~~ 124 (692)
..+..++.|.+ +++.+.||||||.+..
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm~ 99 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTME 99 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEEe
Confidence 46777888988 7889999999998763
No 294
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=68.64 E-value=3.1 Score=43.62 Aligned_cols=26 Identities=19% Similarity=0.428 Sum_probs=20.7
Q ss_pred HHHHHHcCCC--EEEEecCCChhHHHHH
Q 035988 99 IINAVLSGRD--VLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 99 ai~~il~g~d--viv~apTGsGKTl~~~ 124 (692)
++..++.|.+ +++.+.||||||.+.+
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm~ 108 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTMM 108 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEee
Confidence 4556678887 7889999999998753
No 295
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=68.50 E-value=3.4 Score=42.89 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=20.1
Q ss_pred HHHHHHcCCC--EEEEecCCChhHHHH
Q 035988 99 IINAVLSGRD--VLVIMAAGGGKSLCY 123 (692)
Q Consensus 99 ai~~il~g~d--viv~apTGsGKTl~~ 123 (692)
+++.++.|.+ +++.+.||||||.+.
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 4555678887 688999999999875
No 296
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=68.25 E-value=6 Score=33.05 Aligned_cols=45 Identities=16% Similarity=0.309 Sum_probs=36.4
Q ss_pred HHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCc-eeEeccCCC
Q 035988 305 AKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGIS-ADYYHADMD 350 (692)
Q Consensus 305 ~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~-v~~~h~~~~ 350 (692)
...+.. .+++.+++|||.+-..+...+..|...|+. +..+.||+.
T Consensus 49 ~~~~~~-l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 49 GAFMRD-NDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp HHHHHH-SCTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred HHHHHh-cCCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 334443 457889999999988999999999999995 888999864
No 297
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=67.96 E-value=3.3 Score=43.20 Aligned_cols=26 Identities=27% Similarity=0.494 Sum_probs=20.3
Q ss_pred HHHHHHcCCC--EEEEecCCChhHHHHH
Q 035988 99 IINAVLSGRD--VLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 99 ai~~il~g~d--viv~apTGsGKTl~~~ 124 (692)
++..++.|.+ +++.+.||||||.+.+
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 99 (355)
T 1goj_A 72 TVDDILNGYNGTVFAYGQTGAGKSYTMM 99 (355)
T ss_dssp HHHHHTTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHHhCCCcceEEEECCCCCCcceEee
Confidence 4445677877 7889999999999753
No 298
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=67.83 E-value=3.6 Score=44.23 Aligned_cols=56 Identities=11% Similarity=0.075 Sum_probs=41.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChh
Q 035988 131 EGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPE 192 (692)
Q Consensus 131 ~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe 192 (692)
++.+||++|++.-++..++.|+..|+++..++|. ++..++..+..+ ..+|+|+|.-
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg~----~R~~~~~~F~~g--~~~vLVaT~v 232 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRK----TFEREYPTIKQK--KPDFILATDI 232 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSS----SCC--------C--CCSEEEESSS
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecch----hHHHHHhhhcCC--CceEEEECCh
Confidence 5789999999999999999999999999999983 334455666666 8999999953
No 299
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=67.56 E-value=3.3 Score=43.12 Aligned_cols=26 Identities=35% Similarity=0.523 Sum_probs=20.6
Q ss_pred HHHHHHcCCC--EEEEecCCChhHHHHH
Q 035988 99 IINAVLSGRD--VLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 99 ai~~il~g~d--viv~apTGsGKTl~~~ 124 (692)
+++.++.|.+ +++.+.||||||.+..
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 124 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTML 124 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHHT
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeeec
Confidence 4555677887 6899999999999753
No 300
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=67.40 E-value=3.1 Score=43.70 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=20.4
Q ss_pred HHHHHHcCCC--EEEEecCCChhHHHHH
Q 035988 99 IINAVLSGRD--VLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 99 ai~~il~g~d--viv~apTGsGKTl~~~ 124 (692)
+++.++.|.+ +|+.+.||||||.+..
T Consensus 92 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 119 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTGTGKTHTMV 119 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHHhCCceEEEEeecCCCCCcceecc
Confidence 4455677887 7899999999998753
No 301
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=67.16 E-value=3 Score=45.71 Aligned_cols=28 Identities=32% Similarity=0.325 Sum_probs=22.0
Q ss_pred HHHHHHHcCCCEEEEecCCChhHHHHHH
Q 035988 98 EIINAVLSGRDVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 98 ~ai~~il~g~dviv~apTGsGKTl~~~l 125 (692)
.+..++..+.++++.+|+|+|||.....
T Consensus 33 ~l~~al~~~~~VLL~GpPGtGKT~LAra 60 (500)
T 3nbx_X 33 LCLLAALSGESVFLLGPPGIAKSLIARR 60 (500)
T ss_dssp HHHHHHHHTCEEEEECCSSSSHHHHHHH
T ss_pred HHHHHHhcCCeeEeecCchHHHHHHHHH
Confidence 3445566789999999999999986543
No 302
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.93 E-value=3.9 Score=43.90 Aligned_cols=18 Identities=33% Similarity=0.501 Sum_probs=15.8
Q ss_pred CCEEEEecCCChhHHHHH
Q 035988 107 RDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~ 124 (692)
+.+|+.+|+|+|||+.+-
T Consensus 216 rGvLL~GPPGtGKTllAk 233 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAK 233 (437)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 679999999999998654
No 303
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=66.78 E-value=9 Score=48.06 Aligned_cols=97 Identities=15% Similarity=0.169 Sum_probs=62.9
Q ss_pred HHHHHHc------CCCEEEEecCCChhHHHHHH---HHHhcCCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhH
Q 035988 99 IINAVLS------GRDVLVIMAAGGGKSLCYQL---PAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKED 169 (692)
Q Consensus 99 ai~~il~------g~dviv~apTGsGKTl~~~l---pal~~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~ 169 (692)
.++.+|. |+-+.+.+|+|||||...+- -+-..++.+++|.+-.+|-... ++++|++.
T Consensus 1418 ~lD~~lg~gG~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~---~~~~Gv~~----------- 1483 (1706)
T 3cmw_A 1418 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDI----------- 1483 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH---HHHTTCCG-----------
T ss_pred HHHHhcCCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHH---HHHcCCCH-----------
Confidence 5556664 36699999999999976532 1234578888888877765553 66776542
Q ss_pred HHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCcccccc
Q 035988 170 EKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQ 226 (692)
Q Consensus 170 ~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~~ 226 (692)
-++++.-|+.-. ..+........-..+++||||.+-.+..
T Consensus 1484 --------------~~l~~~~p~~~e---~~l~~~~~~~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1484 --------------DNLLCSQPDTGE---QALEICDALARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp --------------GGCEEECCSSHH---HHHHHHHHHHHHTCCSEEEESCSTTCCC
T ss_pred --------------HHeEEeCCCcHH---HHHHHHHHHHHcCCCCEEEEccHHhCCc
Confidence 236666665432 2222233333446799999999998764
No 304
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=66.57 E-value=27 Score=35.17 Aligned_cols=34 Identities=21% Similarity=0.340 Sum_probs=21.3
Q ss_pred cCCCEEEEecCCChhHHHHH-HHHHh--cCCeEEEEc
Q 035988 105 SGRDVLVIMAAGGGKSLCYQ-LPAVL--REGIALVVS 138 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~~-lpal~--~~~~~lvi~ 138 (692)
.|.-+.+++|+|+|||...- +..+. .++.+++..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g 135 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 135 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 35568899999999996543 33332 245555543
No 305
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=66.54 E-value=42 Score=38.85 Aligned_cols=128 Identities=9% Similarity=0.093 Sum_probs=81.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhc
Q 035988 131 EGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHA 210 (692)
Q Consensus 131 ~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~ 210 (692)
+.++||.+..+..+.-....|...|+++..++|+.+..++......++.+.....++++|..... ...++
T Consensus 572 g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg----------~GlNL 641 (800)
T 3mwy_W 572 GHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGG----------LGINL 641 (800)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHT----------TTCCC
T ss_pred CCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEeccccc----------CCCCc
Confidence 56999999999999999999999999999999999999998888888765434435665555332 23355
Q ss_pred CCceEEEEeCcccccccCCCchHHHHHHHHHHhhCCCCCE----EEEecccchhhHHHHHHHhcccce
Q 035988 211 GRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPM----MALTATATQKVQNDLMEMLHIRKC 274 (692)
Q Consensus 211 ~~l~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~----i~lSAT~~~~~~~~i~~~l~~~~~ 274 (692)
...+.||+=+. .|. .......+++..+.-...++ ++...|....+.....+.+.+...
T Consensus 642 ~~a~~VI~~D~----~wn--p~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l~~~ 703 (800)
T 3mwy_W 642 MTADTVVIFDS----DWN--PQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYA 703 (800)
T ss_dssp TTCCEEEESSC----CSC--SHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTSCC-
T ss_pred cccceEEEecC----CCC--hhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHHHHHH
Confidence 56666665332 254 34444444333332223333 344556666666655555555443
No 306
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=66.45 E-value=3 Score=43.71 Aligned_cols=26 Identities=15% Similarity=0.461 Sum_probs=21.5
Q ss_pred HHHHHHcCCC--EEEEecCCChhHHHHH
Q 035988 99 IINAVLSGRD--VLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 99 ai~~il~g~d--viv~apTGsGKTl~~~ 124 (692)
++..++.|.+ +++.+.||||||.+.+
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 98 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTIY 98 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEeec
Confidence 5677788887 6889999999998753
No 307
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=66.12 E-value=2.3 Score=39.39 Aligned_cols=20 Identities=15% Similarity=0.245 Sum_probs=16.4
Q ss_pred cCCCEEEEecCCChhHHHHH
Q 035988 105 SGRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~~ 124 (692)
.|+-+++++|+|+|||...-
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~ 23 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKN 23 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46778999999999997543
No 308
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=66.12 E-value=51 Score=31.74 Aligned_cols=17 Identities=29% Similarity=0.364 Sum_probs=14.5
Q ss_pred CEEEEecCCChhHHHHH
Q 035988 108 DVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 108 dviv~apTGsGKTl~~~ 124 (692)
.+++.++.|.|||...+
T Consensus 8 ~I~~~~kgGvGKTt~a~ 24 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAML 24 (228)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 48999999999998654
No 309
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=65.87 E-value=3.7 Score=43.27 Aligned_cols=26 Identities=15% Similarity=0.406 Sum_probs=20.5
Q ss_pred HHHHHHcCCC--EEEEecCCChhHHHHH
Q 035988 99 IINAVLSGRD--VLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 99 ai~~il~g~d--viv~apTGsGKTl~~~ 124 (692)
+++.++.|.+ +|+.+.||||||.+..
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHHC
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEec
Confidence 4455677877 7899999999998753
No 310
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=65.87 E-value=6.8 Score=39.21 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=16.4
Q ss_pred CCCEEEEecCCChhHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~ 124 (692)
...+++.+|+|+|||....
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5689999999999997654
No 311
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=65.73 E-value=7 Score=37.58 Aligned_cols=55 Identities=18% Similarity=0.198 Sum_probs=41.4
Q ss_pred CCCceEEEEeccchHHHHHHHHHHC----CCceeEeccCCCHHHHHHHHHHHhcCCCcEEEecc
Q 035988 314 NSESGIVYCFSRKECEQVAQELRQR----GISADYYHADMDINAREKVHMRWSKNKLQVIVGTV 373 (692)
Q Consensus 314 ~~~~~IIf~~s~~~~e~l~~~L~~~----g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~ 373 (692)
.+.++||.++++.-+.++++.++.. ++.+..++|+.+........ +..+|+|+|.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp 154 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTP 154 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECH
Confidence 4668999999999999999998875 47889999998755443322 4678999996
No 312
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=65.47 E-value=3.9 Score=40.33 Aligned_cols=21 Identities=33% Similarity=0.392 Sum_probs=17.4
Q ss_pred cCCCEEEEecCCChhHHHHHH
Q 035988 105 SGRDVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~~l 125 (692)
.+..+++.+|+|+|||.....
T Consensus 28 ~~~~vll~G~~GtGKt~la~~ 48 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASR 48 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHH
T ss_pred CCCCEEEECCCCCcHHHHHHH
Confidence 467899999999999986543
No 313
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=65.47 E-value=3.7 Score=34.51 Aligned_cols=38 Identities=13% Similarity=0.160 Sum_probs=34.3
Q ss_pred CCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCC
Q 035988 313 PNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMD 350 (692)
Q Consensus 313 ~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~ 350 (692)
+++.++++||.+-..+...+..|+..|+.+..+.||+.
T Consensus 53 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 53 ERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp CTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 47789999999988999999999999999999999864
No 314
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=65.21 E-value=3.8 Score=44.04 Aligned_cols=26 Identities=19% Similarity=0.374 Sum_probs=20.3
Q ss_pred HHHHHHcCCC--EEEEecCCChhHHHHH
Q 035988 99 IINAVLSGRD--VLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 99 ai~~il~g~d--viv~apTGsGKTl~~~ 124 (692)
++..++.|.+ +|+.+.||||||.+.+
T Consensus 128 lv~~~l~GyN~tIfAYGQTGSGKTyTM~ 155 (443)
T 2owm_A 128 FLDHNFEGYHTCIFAYGQTGSGKSYTMM 155 (443)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred HHHHhhcCCceEEEEeCCCCCCCCEEee
Confidence 3445567877 7899999999998763
No 315
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=65.07 E-value=3.1 Score=43.28 Aligned_cols=26 Identities=19% Similarity=0.457 Sum_probs=20.8
Q ss_pred HHHHHHcCCC--EEEEecCCChhHHHHH
Q 035988 99 IINAVLSGRD--VLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 99 ai~~il~g~d--viv~apTGsGKTl~~~ 124 (692)
.+..++.|.+ +++.+.||||||.+..
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 5555667877 6889999999999764
No 316
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=65.02 E-value=3.8 Score=42.84 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=17.7
Q ss_pred HHcCCCEEEEecCCChhHHHH
Q 035988 103 VLSGRDVLVIMAAGGGKSLCY 123 (692)
Q Consensus 103 il~g~dviv~apTGsGKTl~~ 123 (692)
+..|..+++++|||||||...
T Consensus 172 i~~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHH
T ss_pred HhcCCEEEEECCCCCCHHHHH
Confidence 446889999999999999744
No 317
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=64.93 E-value=3.6 Score=41.88 Aligned_cols=34 Identities=24% Similarity=0.220 Sum_probs=23.3
Q ss_pred cCCCEEEEecCCChhHHHH-HHHHHhcCCeEEEEcc
Q 035988 105 SGRDVLVIMAAGGGKSLCY-QLPAVLREGIALVVSP 139 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~-~lpal~~~~~~lvi~P 139 (692)
.|+-+.+++|+|+|||... +|.-+. .|.+++.+|
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~-~G~I~~~v~ 159 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL-GGSVLSFAN 159 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH-TCEEECGGG
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc-CceEEEEec
Confidence 4677899999999999644 343344 666654443
No 318
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=64.74 E-value=95 Score=29.30 Aligned_cols=128 Identities=12% Similarity=0.172 Sum_probs=80.4
Q ss_pred hcCCCCCCHHHHHHHHHHHc--CCC---EEEEecCCChhHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHcCCC---
Q 035988 86 VFGIPAYRANQQEIINAVLS--GRD---VLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMCLAALGIP--- 157 (692)
Q Consensus 86 ~fg~~~~r~~Q~~ai~~il~--g~d---viv~apTGsGKTl~~~lpal~~~~~~lvi~Pt~~L~~q~~~~l~~~gi~--- 157 (692)
..|+..+.|.+.+.+..+.. +.. -++-..||+|=+..++..++-.++.++-+=.....+....+.+...|+.
T Consensus 31 ~~~~p~i~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~ 110 (221)
T 3dr5_A 31 EFGLPAPDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSR 110 (221)
T ss_dssp HTTCCCCCHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGG
T ss_pred HcCCCCCCHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCc
Confidence 36888889999998887764 222 6779999999988776655434566666667777777777777877765
Q ss_pred EEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCccc
Q 035988 158 AHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHC 223 (692)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~ 223 (692)
+.++.++... ....+. .+.+|++++....-. ...+++..... ++.=+++|+|++..
T Consensus 111 i~~~~gda~~-----~l~~~~--~~~fD~V~~d~~~~~-~~~~l~~~~~~--LkpGG~lv~dn~~~ 166 (221)
T 3dr5_A 111 VRFLLSRPLD-----VMSRLA--NDSYQLVFGQVSPMD-LKALVDAAWPL--LRRGGALVLADALL 166 (221)
T ss_dssp EEEECSCHHH-----HGGGSC--TTCEEEEEECCCTTT-HHHHHHHHHHH--EEEEEEEEETTTTG
T ss_pred EEEEEcCHHH-----HHHHhc--CCCcCeEEEcCcHHH-HHHHHHHHHHH--cCCCcEEEEeCCCC
Confidence 6666654211 111110 237899998765321 12233333322 34457899988864
No 319
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=64.60 E-value=1e+02 Score=29.61 Aligned_cols=179 Identities=15% Similarity=0.127 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeC
Q 035988 141 LSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDE 220 (692)
Q Consensus 141 ~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDE 220 (692)
..+..-..+.+.+.|..+.+................+... .++-+|..|... ....+.+.. ..+.+|++|.
T Consensus 23 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~~~---~~~~~~l~~----~~iPvV~i~~ 93 (276)
T 3jy6_A 23 TELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSR--GFDGLILQSFSN---PQTVQEILH----QQMPVVSVDR 93 (276)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTT--TCSEEEEESSCC---HHHHHHHHT----TSSCEEEESC
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhC--CCCEEEEecCCc---HHHHHHHHH----CCCCEEEEec
Confidence 3445556667777898888887776666555556666554 566666555433 133333332 3677888885
Q ss_pred ccc---ccccCCCchHHHHHHHHHHhhCCCCCEEEEecccc-hhh-HHHHHHHhcccceEEEeccCCCCcceEEEeeccC
Q 035988 221 AHC---CSQWGHDFRPDYKNLGILKTQFPDVPMMALTATAT-QKV-QNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSS 295 (692)
Q Consensus 221 aH~---l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~-~~~-~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~~ 295 (692)
.-. +...+.+...................+.+++.... ... .....-+...-... +. +.+.....
T Consensus 94 ~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf~~~l~~~--------~~--~~~~~~~~ 163 (276)
T 3jy6_A 94 EMDACPWPQVVTDNFEAAKAATTAFRQQGYQHVVVLTSELELSRTRQERYRGILAAAQDV--------DV--LEVSESSY 163 (276)
T ss_dssp CCTTCSSCEEECCHHHHHHHHHHHHHTTTCCEEEEEEECSTTCHHHHHHHHHHHTTCSEE--------EE--EEECSSSC
T ss_pred ccCCCCCCEEEEChHHHHHHHHHHHHHcCCCeEEEEecCCCCCchHHHHHHHHHHHHHhC--------Cc--EEEecccc
Confidence 321 11122233333333333333345556777776553 222 22222221111110 11 11111111
Q ss_pred cchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCc
Q 035988 296 VGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGIS 341 (692)
Q Consensus 296 ~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~ 341 (692)
........+.+++.. ...+.-|||.+...+..+.+.|++.|+.
T Consensus 164 ~~~~~~~~~~~~l~~---~~~~~ai~~~~d~~a~g~~~al~~~g~~ 206 (276)
T 3jy6_A 164 NHSEVHQRLTQLITQ---NDQKTVAFALKERWLLEFFPNLIISGLI 206 (276)
T ss_dssp CHHHHHHHHHHHHHS---SSSCEEEEESSHHHHHHHSHHHHHSSSC
T ss_pred CCcHHHHHHHHHHhc---CCCCcEEEEeCcHHHHHHHHHHHHcCCC
Confidence 122344556666642 4678899999999999999999988764
No 320
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=64.60 E-value=3.2 Score=43.16 Aligned_cols=26 Identities=19% Similarity=0.483 Sum_probs=20.3
Q ss_pred HHHHHHcCCC--EEEEecCCChhHHHHH
Q 035988 99 IINAVLSGRD--VLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 99 ai~~il~g~d--viv~apTGsGKTl~~~ 124 (692)
.+..++.|.+ +++.+.||||||.+.+
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEecc
Confidence 4445567877 6889999999999764
No 321
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=64.51 E-value=3.8 Score=33.95 Aligned_cols=38 Identities=21% Similarity=0.261 Sum_probs=33.9
Q ss_pred CCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCC
Q 035988 313 PNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMD 350 (692)
Q Consensus 313 ~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~ 350 (692)
+++.++++||.+-..+...+..|...|+.+..+.||+.
T Consensus 54 ~~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 46788999999999999999999999999999999863
No 322
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=64.47 E-value=5 Score=39.28 Aligned_cols=19 Identities=32% Similarity=0.510 Sum_probs=15.8
Q ss_pred CCCEEEEecCCChhHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~ 124 (692)
.+.+++.+|+|+|||....
T Consensus 45 ~~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 3569999999999998654
No 323
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=64.32 E-value=4.1 Score=34.09 Aligned_cols=37 Identities=22% Similarity=0.265 Sum_probs=33.3
Q ss_pred CCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCC
Q 035988 313 PNSESGIVYCFSRKECEQVAQELRQRGISADYYHADM 349 (692)
Q Consensus 313 ~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~ 349 (692)
+++.+++|||.+-..+...+..|.+.|+.+..+.||+
T Consensus 54 ~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred cCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 4778999999999999999999999999988888886
No 324
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=64.08 E-value=1.1e+02 Score=29.64 Aligned_cols=180 Identities=9% Similarity=0.065 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCc
Q 035988 142 SLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEA 221 (692)
Q Consensus 142 ~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEa 221 (692)
.+..-..+.+.+.|..+.+..............+.+... .++-+|..|..... ...+.+.. ..+.+|++|-.
T Consensus 30 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~vdgiIi~~~~~~~--~~~~~l~~----~~iPvV~~~~~ 101 (292)
T 3k4h_A 30 EVIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGR--QIGGIILLYSREND--RIIQYLHE----QNFPFVLIGKP 101 (292)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTT--CCCEEEESCCBTTC--HHHHHHHH----TTCCEEEESCC
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcC--CCCEEEEeCCCCCh--HHHHHHHH----CCCCEEEECCC
Confidence 345555566777888777666554444444445555544 67766666544322 23333332 36778888754
Q ss_pred cc----ccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhH-HH---HHHHhcccceEEEeccCCCCcceEEEeec
Q 035988 222 HC----CSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQ-ND---LMEMLHIRKCIKFVSTINRPNLFYMVREK 293 (692)
Q Consensus 222 H~----l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~-~~---i~~~l~~~~~~~~~~~~~r~~l~~~v~~~ 293 (692)
.. +...+.+...................+.+++........ .. +.+.+.-... .. .+.... ..
T Consensus 102 ~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~-----~~-~~~~~~---~~ 172 (292)
T 3k4h_A 102 YDRKDEITYVDNDNYTAAREVAEYLISLGHKQIAFIGGGSDLLVTRDRLAGMSDALKLADI-----VL-PKEYIL---HF 172 (292)
T ss_dssp SSCTTTSCEEECCHHHHHHHHHHHHHHTTCCCEEEEESCTTBHHHHHHHHHHHHHHHHTTC-----CC-CGGGEE---EC
T ss_pred CCCCCCCCEEEECcHHHHHHHHHHHHHCCCceEEEEeCcccchhHHHHHHHHHHHHHHcCC-----CC-ChheEE---ec
Confidence 21 222223333333333333333455677777765433221 11 1111111000 00 011111 11
Q ss_pred cCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCc
Q 035988 294 SSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGIS 341 (692)
Q Consensus 294 ~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~ 341 (692)
..........+.+++.. ...+.-|||.+...+..+.+.|++.|+.
T Consensus 173 ~~~~~~~~~~~~~~l~~---~~~~~ai~~~~d~~a~g~~~al~~~g~~ 217 (292)
T 3k4h_A 173 DFSRESGQQAVEELMGL---QQPPTAIMATDDLIGLGVLSALSKKGFV 217 (292)
T ss_dssp CSSHHHHHHHHHHHHTS---SSCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHcC---CCCCcEEEEcChHHHHHHHHHHHHhCCC
Confidence 11223334555556542 3467788999988898999999887754
No 325
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=63.81 E-value=4 Score=42.18 Aligned_cols=18 Identities=28% Similarity=0.300 Sum_probs=14.9
Q ss_pred CCEEEEecCCChhHHHHH
Q 035988 107 RDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~ 124 (692)
+-+++++|||+|||....
T Consensus 41 ~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 358899999999998553
No 326
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=63.69 E-value=6.5 Score=37.38 Aligned_cols=71 Identities=11% Similarity=0.134 Sum_probs=43.9
Q ss_pred CCCceEEEEeccchHHHHHHHHHHC----CCceeEeccCCCHHHHHHHHHHHhcCCCcEEEecccc------ccccCCCC
Q 035988 314 NSESGIVYCFSRKECEQVAQELRQR----GISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAF------GMGINKPD 383 (692)
Q Consensus 314 ~~~~~IIf~~s~~~~e~l~~~L~~~----g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~------~~GIDip~ 383 (692)
.+.++||.++++.-+.++++.++.. ++.+..++|+.+..+.... + ...+|+|+|.-. ...++..+
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~--~~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---L--RDAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------C--TTCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---C--CCCCEEEECHHHHHHHHHhCCcchhh
Confidence 4568999999999999999888764 6788899998765543322 2 237899999631 22344555
Q ss_pred ccEEEE
Q 035988 384 VRFVIH 389 (692)
Q Consensus 384 v~~VI~ 389 (692)
+++||.
T Consensus 156 ~~~iVi 161 (224)
T 1qde_A 156 IKMFIL 161 (224)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 666553
No 327
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=63.51 E-value=3.1 Score=43.79 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=19.1
Q ss_pred HHHHcCCC--EEEEecCCChhHHHHH
Q 035988 101 NAVLSGRD--VLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 101 ~~il~g~d--viv~apTGsGKTl~~~ 124 (692)
..++.|.+ +|+.+.||||||.+.+
T Consensus 92 ~~~l~G~N~tifAYGqTGSGKTyTM~ 117 (388)
T 3bfn_A 92 RHLLEGQNASVLAYGPTGAGKTHTML 117 (388)
T ss_dssp HHHTTTCCEEEEEESCTTSSHHHHHT
T ss_pred HHhhcCceeeEeeecCCCCCCCeEee
Confidence 44667877 7889999999998763
No 328
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=63.13 E-value=85 Score=30.47 Aligned_cols=181 Identities=9% Similarity=0.037 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeC
Q 035988 141 LSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDE 220 (692)
Q Consensus 141 ~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDE 220 (692)
..++....+.+.+.|..+.+..............+.+... .++-+|..|..... ...+.+. ...+.+|++|.
T Consensus 24 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~~~~~--~~~~~~~----~~~iPvV~~~~ 95 (291)
T 3egc_A 24 AEVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFER--RVDGLILAPSEGEH--DYLRTEL----PKTFPIVAVNR 95 (291)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHT--TCSEEEECCCSSCC--HHHHHSS----CTTSCEEEESS
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHC--CCCEEEEeCCCCCh--HHHHHhh----ccCCCEEEEec
Confidence 3455566677778898888887766666555566666555 67777766654321 2222222 23677888886
Q ss_pred ccc---ccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhh-HHHH---HHHhcccceEEEeccCCCCcceEEEeec
Q 035988 221 AHC---CSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKV-QNDL---MEMLHIRKCIKFVSTINRPNLFYMVREK 293 (692)
Q Consensus 221 aH~---l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~-~~~i---~~~l~~~~~~~~~~~~~r~~l~~~v~~~ 293 (692)
... +...+.+.......+...........+.+++....... .... .+.+.-... .. .+.......
T Consensus 96 ~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~-----~~-~~~~~~~~~-- 167 (291)
T 3egc_A 96 ELRIPGCGAVLSENVRGARTAVEYLIARGHTRIGAIVGSAGLMTSRERLKGFRAAMSAAGL-----PV-RQEWIAAGG-- 167 (291)
T ss_dssp CCCCTTCEEEEECHHHHHHHHHHHHHHTTCCSEEEECSCTTSHHHHHHHHHHHHHHHHTTC-----CC-CGGGEEC----
T ss_pred ccCCCCCCEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCCCCcCHHHHHHHHHHHHHHcCC-----CC-CHHHeEeCC--
Confidence 432 11112233333333333333345667777776653221 1111 111111000 00 000000000
Q ss_pred cCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCc
Q 035988 294 SSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGIS 341 (692)
Q Consensus 294 ~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~ 341 (692)
.........+.+++.. ...+.-|||.+...+..+.+.|++.|+.
T Consensus 168 -~~~~~~~~~~~~~l~~---~~~~~ai~~~~d~~a~g~~~al~~~g~~ 211 (291)
T 3egc_A 168 -VRADNGRDGAIKVLTG---ADRPTALLTSSHRITEGAMQALNVLGLR 211 (291)
T ss_dssp -----CCHHHHHHHHTC----CCCSEEEESSHHHHHHHHHHHHHHTCC
T ss_pred -CChhHHHHHHHHHHhC---CCCCcEEEECCcHHHHHHHHHHHHcCCC
Confidence 0011123445555542 3567788999988898999999887754
No 329
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=63.10 E-value=4 Score=33.69 Aligned_cols=38 Identities=29% Similarity=0.386 Sum_probs=33.9
Q ss_pred CCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCC
Q 035988 313 PNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMD 350 (692)
Q Consensus 313 ~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~ 350 (692)
+++.++++||.+-..+...+..|+..|+.+..+.||+.
T Consensus 54 ~~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 54 NDNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 46789999999999999999999999999999999863
No 330
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=63.03 E-value=5.1 Score=32.56 Aligned_cols=37 Identities=16% Similarity=0.191 Sum_probs=32.7
Q ss_pred CCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCC
Q 035988 313 PNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMD 350 (692)
Q Consensus 313 ~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~ 350 (692)
++ .+++|||.+-..+...+..|+..|+.+..+.||+.
T Consensus 52 ~~-~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 52 PR-RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp CS-SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CC-CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 36 88999999988899999999999999888889874
No 331
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=62.94 E-value=3.7 Score=39.86 Aligned_cols=74 Identities=18% Similarity=0.254 Sum_probs=48.9
Q ss_pred CCCceEEEEeccchHHHHHHHHHHC----CCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccc-----ccc---ccCC
Q 035988 314 NSESGIVYCFSRKECEQVAQELRQR----GISADYYHADMDINAREKVHMRWSKNKLQVIVGTVA-----FGM---GINK 381 (692)
Q Consensus 314 ~~~~~IIf~~s~~~~e~l~~~L~~~----g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~-----~~~---GIDi 381 (692)
.+.++||.++++.-+.++++.++.. ++.+..++|+.....+ ......+..+|+|+|.- +.. ++++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 173 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKK---FGPKSSKKFDILVTTPNRLIYLLKQDPPGIDL 173 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTT---TSTTSCCCCCEEEECHHHHHHHHHSSSCSCCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHH---hhhhhcCCCCEEEECHHHHHHHHHhCCCCccc
Confidence 4557999999999999999999875 6677777765322111 11223456789999952 112 4667
Q ss_pred CCccEEEEe
Q 035988 382 PDVRFVIHH 390 (692)
Q Consensus 382 p~v~~VI~~ 390 (692)
.++++||.-
T Consensus 174 ~~~~~lViD 182 (245)
T 3dkp_A 174 ASVEWLVVD 182 (245)
T ss_dssp TTCCEEEES
T ss_pred ccCcEEEEe
Confidence 777776643
No 332
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=62.87 E-value=4.8 Score=45.91 Aligned_cols=74 Identities=12% Similarity=0.210 Sum_probs=56.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHc------CCCEEEEecC--------CChhHHHHHHHHHHhcCCCccEEEeChhhhhc
Q 035988 131 EGIALVVSPLLSLIQDQVMCLAAL------GIPAHMLTST--------TSKEDEKFIYKALEKGEGELKMLYVTPEKISK 196 (692)
Q Consensus 131 ~~~~lvi~Pt~~L~~q~~~~l~~~------gi~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~ 196 (692)
+.++||.++++..+....+.|... |+++..++|+ ++..++..+...+..+ ..+|+|+|-- +
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g--~~~VLVaT~~-~-- 474 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTG--KINLLIATTV-A-- 474 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC-----CCSEEECS-C--
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcC--CCcEEEEccc-c--
Confidence 689999999999999999999987 8999999999 8899999999988876 8899999853 1
Q ss_pred hHHHHHHHHhhhhcCCceEEE
Q 035988 197 SKRFMSKLEKCHHAGRLSLIS 217 (692)
Q Consensus 197 ~~~~~~~l~~~~~~~~l~~iV 217 (692)
....++..+++||
T Consensus 475 --------~~GIDip~v~~VI 487 (699)
T 4gl2_A 475 --------EEGLDIKECNIVI 487 (699)
T ss_dssp --------CTTSCCCSCCCCE
T ss_pred --------ccCCccccCCEEE
Confidence 2233556677666
No 333
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=62.84 E-value=1.2e+02 Score=29.71 Aligned_cols=173 Identities=11% Similarity=0.055 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCc
Q 035988 142 SLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEA 221 (692)
Q Consensus 142 ~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEa 221 (692)
.+.....+.+.+.|..+.+................+... .++-+|..|..... .....+.. ..+.+|++|-.
T Consensus 44 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~~~~~--~~~~~l~~----~~iPvV~i~~~ 115 (305)
T 3huu_A 44 DVLNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSK--SVDGFILLYSLKDD--PIEHLLNE----FKVPYLIVGKS 115 (305)
T ss_dssp HHHHHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHTT--CCSEEEESSCBTTC--HHHHHHHH----TTCCEEEESCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhC--CCCEEEEeCCcCCc--HHHHHHHH----cCCCEEEECCC
Confidence 345555566777788777665554444444445555544 66666665543322 23333332 36778888854
Q ss_pred cc---ccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhH-HHH---HHHh---cccceEEEeccCCCCcceEEEe
Q 035988 222 HC---CSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQ-NDL---MEML---HIRKCIKFVSTINRPNLFYMVR 291 (692)
Q Consensus 222 H~---l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~-~~i---~~~l---~~~~~~~~~~~~~r~~l~~~v~ 291 (692)
.. +...+.+...................+.+++........ ... .+.+ ++.... +.
T Consensus 116 ~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~--------------~~ 181 (305)
T 3huu_A 116 LNYENIIHIDNDNIDAAYQLTQYLYHLGHRHILFLQESGHYAVTEDRSVGFKQYCDDVKISNDC--------------VV 181 (305)
T ss_dssp CSSTTCCEEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCBHHHHHHHHHHHHHHHHTTCCCCE--------------EE
T ss_pred CcccCCcEEEeCHHHHHHHHHHHHHHCCCCeEEEEcCCcccchhHHHHHHHHHHHHHcCCCccc--------------EE
Confidence 31 111222333333332222333355677777765433221 111 1111 111110 11
Q ss_pred eccCcchHHHHHHHHH-HHHhCCCCCceEEEEeccchHHHHHHHHHHCCCc
Q 035988 292 EKSSVGKVVIDEIAKY-IQESYPNSESGIVYCFSRKECEQVAQELRQRGIS 341 (692)
Q Consensus 292 ~~~~~~~~~~~~l~~~-l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~ 341 (692)
.. .... ....+.++ +.. ...+.-|||.+...+..+.+.|++.|+.
T Consensus 182 ~~-~~~~-~~~~~~~~~l~~---~~~~~ai~~~nd~~A~g~~~al~~~g~~ 227 (305)
T 3huu_A 182 IK-SMND-LRDFIKQYCIDA---SHMPSVIITSDVMLNMQLLNVLYEYQLR 227 (305)
T ss_dssp EC-SHHH-HHHHC-----------CCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred ec-CcHH-HHHHHHHhhhcC---CCCCCEEEECChHHHHHHHHHHHHcCCC
Confidence 11 1111 23344445 543 3467789999988888899999887654
No 334
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=62.79 E-value=4 Score=41.70 Aligned_cols=18 Identities=17% Similarity=0.132 Sum_probs=14.4
Q ss_pred CCEEEEecCCChhHHHHH
Q 035988 107 RDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~ 124 (692)
+-+++.+|||+|||....
T Consensus 4 ~~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCcCCHHHHHH
Confidence 347889999999997553
No 335
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=62.27 E-value=86 Score=30.49 Aligned_cols=180 Identities=7% Similarity=-0.013 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCc
Q 035988 142 SLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEA 221 (692)
Q Consensus 142 ~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEa 221 (692)
.+.....+.+.+.|..+.+................+... .++-+|..|..... ...+.+.. ..+.+|++|..
T Consensus 27 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~~~~~--~~~~~l~~----~~iPvV~i~~~ 98 (288)
T 3gv0_A 27 QMVFGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETG--SADGVIISKIEPND--PRVRFMTE----RNMPFVTHGRS 98 (288)
T ss_dssp HHHHHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHT--CCSEEEEESCCTTC--HHHHHHHH----TTCCEEEESCC
T ss_pred HHHHHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHHcC--CccEEEEecCCCCc--HHHHHHhh----CCCCEEEECCc
Confidence 334445555666787776665544433333333334333 55655554432221 22333332 36778888753
Q ss_pred cc---ccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhH-HHH---HHHhcccceEEEeccCCCCcceEEEeecc
Q 035988 222 HC---CSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQ-NDL---MEMLHIRKCIKFVSTINRPNLFYMVREKS 294 (692)
Q Consensus 222 H~---l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~-~~i---~~~l~~~~~~~~~~~~~r~~l~~~v~~~~ 294 (692)
.. +...+.+.......+...........+.+++........ ... .+.+.-... .+... . +....
T Consensus 99 ~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~-~~~~~----~----~~~~~ 169 (288)
T 3gv0_A 99 DMGIEHAFHDFDNEAYAYEAVERLAQCGRKRIAVIVPPSRFSFHDHARKGFNRGIRDFGL-TEFPI----D----AVTIE 169 (288)
T ss_dssp CSSCCCEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCTTSHHHHHHHHHHHHHHHHTTC-EECCC----C----SCCTT
T ss_pred CCCCCCcEEEeCcHHHHHHHHHHHHHCCCCeEEEEcCCcccchHHHHHHHHHHHHHHcCC-Ccchh----h----eeccc
Confidence 21 111122233222332222223345567677665432211 111 111111110 00000 0 00111
Q ss_pred CcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCc
Q 035988 295 SVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGIS 341 (692)
Q Consensus 295 ~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~ 341 (692)
.........+.+++.. ...+.-|||.+...+..+.+.|++.|+.
T Consensus 170 ~~~~~~~~~~~~~l~~---~~~~~ai~~~~d~~A~g~~~al~~~g~~ 213 (288)
T 3gv0_A 170 TPLEKIRDFGQRLMQS---SDRPDGIVSISGSSTIALVAGFEAAGVK 213 (288)
T ss_dssp SCHHHHHHHHHHHTTS---SSCCSEEEESCHHHHHHHHHHHHTTTCC
T ss_pred cchHHHHHHHHHHHhC---CCCCcEEEEcCcHHHHHHHHHHHHcCCC
Confidence 1122233444455432 3457789999988888898999877653
No 336
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=62.22 E-value=4.8 Score=41.01 Aligned_cols=17 Identities=12% Similarity=0.235 Sum_probs=13.8
Q ss_pred CEEEEecCCChhHHHHH
Q 035988 108 DVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 108 dviv~apTGsGKTl~~~ 124 (692)
-+++.+|||+|||....
T Consensus 12 ~i~i~GptgsGKt~la~ 28 (316)
T 3foz_A 12 AIFLMGPTASGKTALAI 28 (316)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 36889999999997543
No 337
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.03 E-value=4.4 Score=43.23 Aligned_cols=19 Identities=32% Similarity=0.462 Sum_probs=16.1
Q ss_pred CCCEEEEecCCChhHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~ 124 (692)
.+.+|+.+|+|+|||+.+-
T Consensus 216 prGvLLyGPPGTGKTlLAk 234 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAK 234 (437)
T ss_dssp CSEEEEESSTTTTHHHHHH
T ss_pred CCCCceECCCCchHHHHHH
Confidence 3679999999999998654
No 338
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=61.84 E-value=4 Score=38.45 Aligned_cols=19 Identities=32% Similarity=0.391 Sum_probs=15.1
Q ss_pred cCCCEEEEecCCChhHHHH
Q 035988 105 SGRDVLVIMAAGGGKSLCY 123 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~ 123 (692)
.|+-+.+++|+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999754
No 339
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=61.67 E-value=6.8 Score=38.98 Aligned_cols=43 Identities=12% Similarity=0.102 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCCCCCCHHHHH-HHHHHHcCC-----CEEEEecCCChhHHHHH
Q 035988 78 RADDVRLNVFGIPAYRANQQE-IINAVLSGR-----DVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 78 ~~~~~l~~~fg~~~~r~~Q~~-ai~~il~g~-----dviv~apTGsGKTl~~~ 124 (692)
.+.+.|+ .-|+ .|.+-. ++..++.++ .+++.+|+|+|||+.+.
T Consensus 74 ~i~~~l~-~qg~---~~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 74 RIYKILE-LNGY---DPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHH-HTTC---CHHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHH-HcCC---CHHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 3455554 3354 466643 466677664 38999999999998665
No 340
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=61.54 E-value=3.2 Score=41.28 Aligned_cols=20 Identities=30% Similarity=0.222 Sum_probs=16.3
Q ss_pred HcCCCEEEEecCCChhHHHH
Q 035988 104 LSGRDVLVIMAAGGGKSLCY 123 (692)
Q Consensus 104 l~g~dviv~apTGsGKTl~~ 123 (692)
..|.-+.+++|||||||...
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHH
T ss_pred CCCCEEEEECCCCccHHHHH
Confidence 35667899999999999653
No 341
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=61.36 E-value=4.5 Score=41.66 Aligned_cols=20 Identities=30% Similarity=0.508 Sum_probs=17.1
Q ss_pred HcCCCEEEEecCCChhHHHH
Q 035988 104 LSGRDVLVIMAAGGGKSLCY 123 (692)
Q Consensus 104 l~g~dviv~apTGsGKTl~~ 123 (692)
..|..+.+.+|||||||...
T Consensus 169 ~~g~~v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYI 188 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 46889999999999999743
No 342
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=61.27 E-value=14 Score=37.77 Aligned_cols=18 Identities=11% Similarity=0.167 Sum_probs=14.8
Q ss_pred CEEEEecCCChhHHHHHH
Q 035988 108 DVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 108 dviv~apTGsGKTl~~~l 125 (692)
-+++++|||+|||.....
T Consensus 7 ~i~i~GptGsGKTtla~~ 24 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMA 24 (323)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999986543
No 343
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=61.14 E-value=74 Score=35.67 Aligned_cols=97 Identities=11% Similarity=-0.016 Sum_probs=68.8
Q ss_pred cCCChhHHH--HHHHHHh--cCCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEe
Q 035988 114 AAGGGKSLC--YQLPAVL--REGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYV 189 (692)
Q Consensus 114 pTGsGKTl~--~~lpal~--~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~ 189 (692)
+..+||-.. .++..+. .+.++||.+.++..+......+...|+.+..++|+.+..++..+.+.+..+.....++++
T Consensus 395 ~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~ 474 (644)
T 1z3i_X 395 PQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFML 474 (644)
T ss_dssp GGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEE
T ss_pred cccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEE
Confidence 445888743 3343332 367999999999999998899999999999999999999999999998876433335555
Q ss_pred ChhhhhchHHHHHHHHhhhhcCCceEEEEeC
Q 035988 190 TPEKISKSKRFMSKLEKCHHAGRLSLISIDE 220 (692)
Q Consensus 190 Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDE 220 (692)
+..... ...++...+.||+=+
T Consensus 475 st~a~g----------~Glnl~~a~~Vi~~d 495 (644)
T 1z3i_X 475 SSKAGG----------CGLNLIGANRLVMFD 495 (644)
T ss_dssp EGGGSC----------TTCCCTTEEEEEECS
T ss_pred eccccc----------CCcccccCCEEEEEC
Confidence 555432 123445566666433
No 344
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=60.90 E-value=3.6 Score=39.07 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=16.1
Q ss_pred cCCCEEEEecCCChhHHHHH
Q 035988 105 SGRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~~ 124 (692)
.|+-+++.+|+|+|||....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~ 26 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVRE 26 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 35668899999999997553
No 345
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=60.79 E-value=9.5 Score=45.89 Aligned_cols=76 Identities=14% Similarity=0.259 Sum_probs=58.0
Q ss_pred CCCceEEEEeccchHHHHHHHHHHC----CC----ceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccc-cccccC-CCC
Q 035988 314 NSESGIVYCFSRKECEQVAQELRQR----GI----SADYYHADMDINAREKVHMRWSKNKLQVIVGTVA-FGMGIN-KPD 383 (692)
Q Consensus 314 ~~~~~IIf~~s~~~~e~l~~~L~~~----g~----~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~-~~~GID-ip~ 383 (692)
.+.++||.++|+.-+.++++.++.. ++ .+..+||+.+..++....+.+.+ .+|+|+|+- +..-+. +.+
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 5778999999999999999988754 56 78999999999888777777776 899999973 111111 457
Q ss_pred ccEEEEeC
Q 035988 384 VRFVIHHS 391 (692)
Q Consensus 384 v~~VI~~~ 391 (692)
+++||.-.
T Consensus 176 l~~lViDE 183 (1054)
T 1gku_B 176 FDFIFVDD 183 (1054)
T ss_dssp CSEEEESC
T ss_pred CCEEEEeC
Confidence 77777433
No 346
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=60.74 E-value=4 Score=42.89 Aligned_cols=25 Identities=20% Similarity=0.485 Sum_probs=19.4
Q ss_pred HHHHHcCCC--EEEEecCCChhHHHHH
Q 035988 100 INAVLSGRD--VLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 100 i~~il~g~d--viv~apTGsGKTl~~~ 124 (692)
+..++.|.+ +|+.+.||||||.+..
T Consensus 108 v~~~l~G~N~tifAYGqTGSGKTyTM~ 134 (376)
T 2rep_A 108 VQSALDGYPVCIFAYGQTGSGKTFTME 134 (376)
T ss_dssp HHGGGGTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHhcCCCceEEEEeCCCCCCCceEee
Confidence 344557877 7889999999998764
No 347
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=60.58 E-value=1.3e+02 Score=29.28 Aligned_cols=187 Identities=11% Similarity=0.056 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCC--ChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEE
Q 035988 141 LSLIQDQVMCLAALGIPAHMLTSTT--SKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISI 218 (692)
Q Consensus 141 ~~L~~q~~~~l~~~gi~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVI 218 (692)
..+..-..+.+++.|..+.+..... ...........+... .++-+|..|..........+.+ . ..+.+|++
T Consensus 21 ~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~vdgiii~~~~~~~~~~~~~~~----~-~~iPvV~~ 93 (304)
T 3o1i_D 21 LSVNYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQW--GANAIILGTVDPHAYEHNLKSW----V-GNTPVFAT 93 (304)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHHH--TCSEEEECCSSTTSSTTTHHHH----T-TTSCEEEC
T ss_pred HHHHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHc--CCCEEEEeCCChhHHHHHHHHH----c-CCCCEEEe
Confidence 3445556666777899888888776 554555555555544 6777776664332111122222 2 47888999
Q ss_pred eCcc---------cccccCCCchHHHHHHH-HHHhhCC----CCCEEEEecccchhh----HHHHHHHhcccceEEEecc
Q 035988 219 DEAH---------CCSQWGHDFRPDYKNLG-ILKTQFP----DVPMMALTATATQKV----QNDLMEMLHIRKCIKFVST 280 (692)
Q Consensus 219 DEaH---------~l~~~g~~fr~~~~~l~-~l~~~~~----~~~~i~lSAT~~~~~----~~~i~~~l~~~~~~~~~~~ 280 (692)
|... .+...+.+....-..+. .+....+ ...+.+++....... ..-+.+.+.-.
T Consensus 94 ~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~-------- 165 (304)
T 3o1i_D 94 VNQLDLDEEQSTLLKGEVGVDWYWMGYEAGKYLAERHPKGSGKTNIALLLGPRTRGGTKPVTTGFYEAIKNS-------- 165 (304)
T ss_dssp SSCCCCCTTTGGGEEEECCCCHHHHHHHHHHHHHTTSBTTTCCEEEEEECCCC-----CHHHHHHHHTTTTB--------
T ss_pred cCCCcccccCCCceEEEEecCHHHHHHHHHHHHHHhcccCCCCCEEEEEECCCCcchHHHHHHHHHHHHhcC--------
Confidence 7432 12223334333333332 3333331 345666765433211 11222222211
Q ss_pred CCCCcceEEEe-eccCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCC--ceeEeccCCCH
Q 035988 281 INRPNLFYMVR-EKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGI--SADYYHADMDI 351 (692)
Q Consensus 281 ~~r~~l~~~v~-~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~--~v~~~h~~~~~ 351 (692)
++..... ............+.+++ .. + .+.- ||.+-..+..+.+.|++.|+ .+.++.-+.++
T Consensus 166 ----~~~~~~~~~~~~~~~~~~~~~~~~l-~~--~-~~~a-i~~~d~~a~g~~~al~~~g~~~di~vvg~d~~p 230 (304)
T 3o1i_D 166 ----DIHIVDSFWADNDKELQRNLVQRVI-DM--G-NIDY-IVGSAVAIEAAISELRSADKTHDIGLVSVYLSH 230 (304)
T ss_dssp ----TEEEEECCCCCSCHHHHHHHHHHHH-HH--S-CCSE-EEECHHHHHHHHHHHTTTTCGGGSEEBCSSCCH
T ss_pred ----CCEEEEeecCCCcHHHHHHHHHHHH-cC--C-CCCE-EEecCcchHHHHHHHHhcCCCCCeEEEEeCCCH
Confidence 1111111 11112233445566666 44 3 3334 56677888889999999888 45555444444
No 348
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=59.87 E-value=8.5 Score=43.77 Aligned_cols=56 Identities=14% Similarity=0.211 Sum_probs=46.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChh
Q 035988 131 EGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPE 192 (692)
Q Consensus 131 ~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe 192 (692)
++.+||++|++.-++..++.|+..|+++..++|. ++..++..+..+ ..+|+|+|.-
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g--~~~VLVaTdv 465 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNG--DWDFVITTDI 465 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTC--CCSEEEECGG
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCC--CceEEEECch
Confidence 5789999999999999999999999999999983 455566666665 8999999943
No 349
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=59.75 E-value=6.9 Score=40.66 Aligned_cols=20 Identities=25% Similarity=0.399 Sum_probs=16.6
Q ss_pred CCCEEEEecCCChhHHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~l 125 (692)
.+.+++.+|+|+|||.....
T Consensus 117 ~~~vLl~GppGtGKT~la~a 136 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKC 136 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 46799999999999986643
No 350
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=59.66 E-value=30 Score=39.45 Aligned_cols=64 Identities=16% Similarity=0.209 Sum_probs=53.3
Q ss_pred HHhcCCeEEEEcccHHHHHHHHHHHHHcC------------------------------------CCEEEEecCCChhHH
Q 035988 127 AVLREGIALVVSPLLSLIQDQVMCLAALG------------------------------------IPAHMLTSTTSKEDE 170 (692)
Q Consensus 127 al~~~~~~lvi~Pt~~L~~q~~~~l~~~g------------------------------------i~~~~~~~~~~~~~~ 170 (692)
.+..++.+||.+|++.-+......+.... ..+..++++.+..++
T Consensus 248 ~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r 327 (715)
T 2va8_A 248 SLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALR 327 (715)
T ss_dssp HHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHH
T ss_pred HHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHH
Confidence 34457899999999999999888887642 248889999999999
Q ss_pred HHHHHHHHhcCCCccEEEeChh
Q 035988 171 KFIYKALEKGEGELKMLYVTPE 192 (692)
Q Consensus 171 ~~~~~~l~~~~~~~~Ili~Tpe 192 (692)
..+...+..+ ..+|+|+|.-
T Consensus 328 ~~v~~~f~~g--~~~vlvaT~~ 347 (715)
T 2va8_A 328 DLIEEGFRQR--KIKVIVATPT 347 (715)
T ss_dssp HHHHHHHHTT--CSCEEEECGG
T ss_pred HHHHHHHHcC--CCeEEEEChH
Confidence 9999888877 8999999953
No 351
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=59.36 E-value=3.5 Score=39.21 Aligned_cols=18 Identities=39% Similarity=0.399 Sum_probs=14.8
Q ss_pred CCCEEEEecCCChhHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCY 123 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~ 123 (692)
++-+++.+|||+|||...
T Consensus 34 g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TEEEEEECCCTTTTHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 566899999999998543
No 352
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=59.34 E-value=7.5 Score=40.56 Aligned_cols=20 Identities=35% Similarity=0.531 Sum_probs=16.7
Q ss_pred CCCEEEEecCCChhHHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~l 125 (692)
...+++.+|+|+|||.....
T Consensus 72 ~~~ill~Gp~GtGKT~la~~ 91 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQT 91 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHH
Confidence 46799999999999986643
No 353
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=59.18 E-value=19 Score=28.35 Aligned_cols=37 Identities=16% Similarity=0.352 Sum_probs=30.7
Q ss_pred CCCCceEEEEeccchHHHHHHHHHHCCCc-eeEeccCCC
Q 035988 313 PNSESGIVYCFSRKECEQVAQELRQRGIS-ADYYHADMD 350 (692)
Q Consensus 313 ~~~~~~IIf~~s~~~~e~l~~~L~~~g~~-v~~~h~~~~ 350 (692)
+++.+++|||.+-..+...+..|...|+. +..+ ||+.
T Consensus 39 ~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 39 DKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp CTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 46788999999988899999999999986 5555 7754
No 354
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=59.17 E-value=1.5e+02 Score=29.81 Aligned_cols=32 Identities=13% Similarity=0.122 Sum_probs=20.1
Q ss_pred CCCEEEEecCCChhHHHHH-HHHHh--cCCeEEEE
Q 035988 106 GRDVLVIMAAGGGKSLCYQ-LPAVL--REGIALVV 137 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~-lpal~--~~~~~lvi 137 (692)
++-+.+.+|+|+|||.+.. +.... .+++++++
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4457888999999996543 33222 34555554
No 355
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=59.08 E-value=5 Score=37.67 Aligned_cols=21 Identities=14% Similarity=0.115 Sum_probs=17.4
Q ss_pred cCCCEEEEecCCChhHHHHHH
Q 035988 105 SGRDVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~~l 125 (692)
.++.+++.+|+|+|||.....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~ 44 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKA 44 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHH
Confidence 467899999999999986543
No 356
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=58.93 E-value=14 Score=32.79 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=31.8
Q ss_pred CCCCceEEEEeccchHHHHHHHHHHCCC-ceeEeccCCC
Q 035988 313 PNSESGIVYCFSRKECEQVAQELRQRGI-SADYYHADMD 350 (692)
Q Consensus 313 ~~~~~~IIf~~s~~~~e~l~~~L~~~g~-~v~~~h~~~~ 350 (692)
.++.+++|||.+-..+...+..|...|+ .+..+.||+.
T Consensus 78 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 78 QHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp ---CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 3678999999998889999999999999 4899999984
No 357
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=58.91 E-value=18 Score=41.04 Aligned_cols=80 Identities=11% Similarity=-0.028 Sum_probs=62.6
Q ss_pred eEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCC
Q 035988 133 IALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGR 212 (692)
Q Consensus 133 ~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~ 212 (692)
..+|+++++.-+....+.+.+.|+.+..++|+.+..++..+...+..+.+..+|+|+|.- + ....++ .
T Consensus 322 g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi-~----------e~GlDi-~ 389 (677)
T 3rc3_A 322 GDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDA-I----------GMGLNL-S 389 (677)
T ss_dssp TEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGG-G----------GSSCCC-C
T ss_pred CCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcH-H----------HCCcCc-C
Confidence 346668889989999999999999999999999999888888888873348999999964 2 233455 6
Q ss_pred ceEEEEeCcccc
Q 035988 213 LSLISIDEAHCC 224 (692)
Q Consensus 213 l~~iVIDEaH~l 224 (692)
+++||+-.....
T Consensus 390 v~~VI~~~~~k~ 401 (677)
T 3rc3_A 390 IRRIIFYSLIKP 401 (677)
T ss_dssp BSEEEESCSBC-
T ss_pred ccEEEECCcccc
Confidence 777877666553
No 358
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=58.80 E-value=8.5 Score=33.20 Aligned_cols=37 Identities=11% Similarity=0.250 Sum_probs=32.6
Q ss_pred CC-CceEEEE-eccchHHHHHHHHHHCCCceeEeccCCC
Q 035988 314 NS-ESGIVYC-FSRKECEQVAQELRQRGISADYYHADMD 350 (692)
Q Consensus 314 ~~-~~~IIf~-~s~~~~e~l~~~L~~~g~~v~~~h~~~~ 350 (692)
+. .+++||| .+-..+...+..|+..|+.+..+.||+.
T Consensus 87 ~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~ 125 (134)
T 3g5j_A 87 LNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYK 125 (134)
T ss_dssp TTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred cCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHH
Confidence 55 8999999 5778888999999999999999999975
No 359
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=58.78 E-value=38 Score=33.79 Aligned_cols=17 Identities=24% Similarity=0.213 Sum_probs=14.2
Q ss_pred CEEEEecCCChhHHHHH
Q 035988 108 DVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 108 dviv~apTGsGKTl~~~ 124 (692)
-+++.||+|+|||...-
T Consensus 35 livl~G~sGsGKSTla~ 51 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRS 51 (287)
T ss_dssp EEEEECCTTSCTHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48899999999997553
No 360
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=58.69 E-value=1.2e+02 Score=32.55 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=20.5
Q ss_pred HHHHHHH---cCCCEEEEecCCChhHHHH
Q 035988 98 EIINAVL---SGRDVLVIMAAGGGKSLCY 123 (692)
Q Consensus 98 ~ai~~il---~g~dviv~apTGsGKTl~~ 123 (692)
.+|+.+. .|+.+++.+|.|.|||...
T Consensus 140 r~ID~L~pi~kGq~~~i~G~sGvGKTtL~ 168 (473)
T 1sky_E 140 KVVDLLAPYIKGGKIGLFGGAGVGKTVLI 168 (473)
T ss_dssp HHHHHHSCEETTCEEEEECCSSSCHHHHH
T ss_pred hHHHHHhhhccCCEEEEECCCCCCccHHH
Confidence 3666654 5888999999999999754
No 361
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=58.20 E-value=5.3 Score=36.76 Aligned_cols=20 Identities=20% Similarity=0.202 Sum_probs=16.4
Q ss_pred CCCEEEEecCCChhHHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~l 125 (692)
++.+++.+|+|||||.....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~ 24 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQ 24 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 45789999999999986543
No 362
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=58.09 E-value=7.9 Score=33.58 Aligned_cols=39 Identities=18% Similarity=0.242 Sum_probs=34.1
Q ss_pred CCCCCceEEEEeccchHHHHHHHHHHCCCc-eeEeccCCC
Q 035988 312 YPNSESGIVYCFSRKECEQVAQELRQRGIS-ADYYHADMD 350 (692)
Q Consensus 312 ~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~-v~~~h~~~~ 350 (692)
.+++.+++|||.+-..+...+..|...|+. +..+.||+.
T Consensus 79 l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 79 FGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp CCTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 347789999999999999999999999985 888999974
No 363
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=57.96 E-value=20 Score=35.93 Aligned_cols=71 Identities=14% Similarity=0.054 Sum_probs=55.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhc
Q 035988 131 EGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHA 210 (692)
Q Consensus 131 ~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~ 210 (692)
++++||.++++.-+....+.+. .+..++|+.+..++......+..+ ..+|+|+|.- +....++
T Consensus 220 ~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~--~~~vlv~T~~-----------~~~Gid~ 282 (337)
T 2z0m_A 220 DKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREG--EYDMLITTDV-----------ASRGLDI 282 (337)
T ss_dssp CSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTT--SCSEEEECHH-----------HHTTCCC
T ss_pred CCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcC--CCcEEEEcCc-----------cccCCCc
Confidence 4789999999998887666655 578899999999999999988877 8999999952 1334455
Q ss_pred CCceEEEE
Q 035988 211 GRLSLISI 218 (692)
Q Consensus 211 ~~l~~iVI 218 (692)
..++++|.
T Consensus 283 ~~~~~Vi~ 290 (337)
T 2z0m_A 283 PLVEKVIN 290 (337)
T ss_dssp CCBSEEEE
T ss_pred cCCCEEEE
Confidence 66777775
No 364
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=57.72 E-value=6.2 Score=41.12 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=18.1
Q ss_pred HHH-cCCC--EEEEecCCChhHHHHH
Q 035988 102 AVL-SGRD--VLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 102 ~il-~g~d--viv~apTGsGKTl~~~ 124 (692)
.++ .|.+ +++.+.||||||.+.+
T Consensus 78 ~~~~~G~n~tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 78 DLYENGCVCSCFAYGQTGSGKTYTML 103 (360)
T ss_dssp HHHHHCCEEEEEEECCTTSSHHHHHH
T ss_pred hhccCCceeEEEeeCCCCCCCCEEEe
Confidence 344 3776 6999999999999764
No 365
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=57.38 E-value=4.1 Score=38.62 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=16.2
Q ss_pred cCCCEEEEecCCChhHHHH
Q 035988 105 SGRDVLVIMAAGGGKSLCY 123 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~ 123 (692)
.|+-+++++|+|+|||...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp SCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECcCCCCHHHHH
Confidence 5777899999999999754
No 366
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=57.34 E-value=13 Score=39.66 Aligned_cols=32 Identities=19% Similarity=0.231 Sum_probs=20.1
Q ss_pred CCEEEEecCCChhHHHHH-HHHH--hcCCeEEEEc
Q 035988 107 RDVLVIMAAGGGKSLCYQ-LPAV--LREGIALVVS 138 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~-lpal--~~~~~~lvi~ 138 (692)
+.+++++++|+|||.... +... ..+.+++++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 468899999999996543 2222 1245555554
No 367
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=57.14 E-value=5.2 Score=41.41 Aligned_cols=19 Identities=32% Similarity=0.310 Sum_probs=16.0
Q ss_pred CCEEEEecCCChhHHHHHH
Q 035988 107 RDVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~l 125 (692)
+.+++.+|+|+|||.....
T Consensus 71 ~~vLl~GppGtGKT~la~~ 89 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMG 89 (368)
T ss_dssp CEEEEEESTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 5699999999999986643
No 368
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=57.06 E-value=4.5 Score=36.43 Aligned_cols=17 Identities=29% Similarity=0.344 Sum_probs=14.1
Q ss_pred CEEEEecCCChhHHHHH
Q 035988 108 DVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 108 dviv~apTGsGKTl~~~ 124 (692)
-+++.+|+|||||....
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36899999999998654
No 369
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=56.97 E-value=2.3 Score=46.21 Aligned_cols=58 Identities=16% Similarity=0.138 Sum_probs=0.0
Q ss_pred CeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeCh
Q 035988 132 GIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTP 191 (692)
Q Consensus 132 ~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tp 191 (692)
+++||.+|++.-+......+...|..+..++|+.+..++..+...+..+ ..+|+|+|.
T Consensus 334 ~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g--~~~iLv~T~ 391 (479)
T 3fmp_B 334 AQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG--KEKVLVTTN 391 (479)
T ss_dssp ------------------------------------------------------------
T ss_pred CceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcC--CCcEEEEcc
Confidence 5799999999999999999999999999999999998888888888877 889999994
No 370
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=56.86 E-value=6 Score=34.08 Aligned_cols=39 Identities=13% Similarity=0.154 Sum_probs=33.7
Q ss_pred CCCCCceEEEEeccch--HHHHHHHHHHCCCceeEeccCCC
Q 035988 312 YPNSESGIVYCFSRKE--CEQVAQELRQRGISADYYHADMD 350 (692)
Q Consensus 312 ~~~~~~~IIf~~s~~~--~e~l~~~L~~~g~~v~~~h~~~~ 350 (692)
++++.+++|||.+-.. +...+..|+..|+.+..+.||+.
T Consensus 68 l~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 68 LDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp SCTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred CCCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 3467889999999877 89999999999999888999863
No 371
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=56.74 E-value=6.5 Score=37.35 Aligned_cols=72 Identities=11% Similarity=0.129 Sum_probs=48.1
Q ss_pred CCCceEEEEeccchHHHHHHHHHHC--------CCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccc-----ccc-cc
Q 035988 314 NSESGIVYCFSRKECEQVAQELRQR--------GISADYYHADMDINAREKVHMRWSKNKLQVIVGTVA-----FGM-GI 379 (692)
Q Consensus 314 ~~~~~IIf~~s~~~~e~l~~~L~~~--------g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~-----~~~-GI 379 (692)
.+.++||.|+++.-+.++++.+++. ++.+..++|+.+....... + .+..+|+|+|.- +.. .+
T Consensus 71 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~Iiv~Tp~~l~~~l~~~~~ 146 (219)
T 1q0u_A 71 AEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEK---L-NVQPHIVIGTPGRINDFIREQAL 146 (219)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCC---C-SSCCSEEEECHHHHHHHHHTTCC
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHH---c-CCCCCEEEeCHHHHHHHHHcCCC
Confidence 3568999999999999998888754 5778888998754332111 1 245689999952 222 34
Q ss_pred CCCCccEEEE
Q 035988 380 NKPDVRFVIH 389 (692)
Q Consensus 380 Dip~v~~VI~ 389 (692)
+..++++||.
T Consensus 147 ~~~~~~~lVi 156 (219)
T 1q0u_A 147 DVHTAHILVV 156 (219)
T ss_dssp CGGGCCEEEE
T ss_pred CcCcceEEEE
Confidence 5556666664
No 372
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=56.74 E-value=4.3 Score=37.07 Aligned_cols=20 Identities=20% Similarity=0.167 Sum_probs=16.1
Q ss_pred CCCEEEEecCCChhHHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~l 125 (692)
++-+++.+++|||||...-.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~ 22 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRC 22 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 45689999999999986543
No 373
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=56.67 E-value=5.2 Score=37.09 Aligned_cols=17 Identities=29% Similarity=0.448 Sum_probs=14.2
Q ss_pred CCEEEEecCCChhHHHH
Q 035988 107 RDVLVIMAAGGGKSLCY 123 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~ 123 (692)
+-+.+.+|+|+|||...
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45789999999999754
No 374
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=56.60 E-value=1.6e+02 Score=29.26 Aligned_cols=182 Identities=9% Similarity=0.067 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeC
Q 035988 141 LSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDE 220 (692)
Q Consensus 141 ~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDE 220 (692)
..+.....+.+.+.|..+.+..+...........+.+... .++-+|..|..... ..+...+.. ..+.+|++|-
T Consensus 79 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~~~~~-~~~~~~~~~----~~iPvV~~~~ 151 (338)
T 3dbi_A 79 SELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDL--RCDAIMIYPRFLSV-DEIDDIIDA----HSQPIMVLNR 151 (338)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHT--TCSEEEECCSSSCH-HHHHHHHHH----CSSCEEEESS
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhC--CCCEEEEeCCCCCh-HHHHHHHHc----CCCCEEEEcC
Confidence 3456666677888898888877666655555555555554 67767766643321 123332322 2466888874
Q ss_pred ccc---ccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhH-HH---HHHHhcccceEEEeccCCCCcceEEEeec
Q 035988 221 AHC---CSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQ-ND---LMEMLHIRKCIKFVSTINRPNLFYMVREK 293 (692)
Q Consensus 221 aH~---l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~-~~---i~~~l~~~~~~~~~~~~~r~~l~~~v~~~ 293 (692)
... +...+.+...................+.+++........ .. +.+.+.-... .+ .+... . ..
T Consensus 152 ~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~-----~~-~~~~~--~-~~ 222 (338)
T 3dbi_A 152 RLRKNSSHSVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLAGYKDALAQHGI-----AL-NEKLI--A-NG 222 (338)
T ss_dssp CCSSSGGGEECBCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHHHHHHHHHHTTC-----CC-CGGGE--E-CC
T ss_pred CCCCCCCCEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHHHHHHHHHCCC-----CC-CcceE--E-eC
Confidence 321 111222333222222222223456677777765432211 11 1111110000 00 00010 1 11
Q ss_pred cCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCc
Q 035988 294 SSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGIS 341 (692)
Q Consensus 294 ~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~ 341 (692)
..........+.+++.. ...+.-|||.+...+..+.+.|++.|+.
T Consensus 223 ~~~~~~~~~~~~~ll~~---~~~~~ai~~~nd~~A~g~~~al~~~G~~ 267 (338)
T 3dbi_A 223 KWTPASGAEGVEMLLER---GAKFSALVASNDDMAIGAMKALHERGVA 267 (338)
T ss_dssp CSSHHHHHHHHHHHHHT---TCCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHcC---CCCCeEEEECChHHHHHHHHHHHHcCCC
Confidence 11122334455556653 4567889999988888899999887754
No 375
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=56.50 E-value=31 Score=39.95 Aligned_cols=70 Identities=9% Similarity=0.127 Sum_probs=53.3
Q ss_pred CCCceEEEEeccchHHHHHHHHHH----CCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccc-c------------c
Q 035988 314 NSESGIVYCFSRKECEQVAQELRQ----RGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVA-F------------G 376 (692)
Q Consensus 314 ~~~~~IIf~~s~~~~e~l~~~L~~----~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~-~------------~ 376 (692)
.+..++|.|+|+.-|...++.+.. .|+.+..+.|+++.++|.... ..+|+|+|+- + .
T Consensus 123 ~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~~~~ 196 (844)
T 1tf5_A 123 TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMVLYK 196 (844)
T ss_dssp TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSG
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhhcch
Confidence 577899999999999888887754 489999999999987765542 3689999972 1 1
Q ss_pred cccCCCCccEEEE
Q 035988 377 MGINKPDVRFVIH 389 (692)
Q Consensus 377 ~GIDip~v~~VI~ 389 (692)
..++...++++|.
T Consensus 197 ~~l~lr~~~~lVl 209 (844)
T 1tf5_A 197 EQMVQRPLHFAVI 209 (844)
T ss_dssp GGCCCCCCCEEEE
T ss_pred hhhcccCCCEEEE
Confidence 1356677887663
No 376
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=56.44 E-value=4.6 Score=39.80 Aligned_cols=15 Identities=20% Similarity=0.100 Sum_probs=13.0
Q ss_pred EEEEecCCChhHHHH
Q 035988 109 VLVIMAAGGGKSLCY 123 (692)
Q Consensus 109 viv~apTGsGKTl~~ 123 (692)
+++.+|||||||...
T Consensus 4 i~I~G~~GSGKSTla 18 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCcCHHHHH
Confidence 688999999999754
No 377
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=56.22 E-value=30 Score=40.05 Aligned_cols=69 Identities=12% Similarity=0.144 Sum_probs=51.8
Q ss_pred CCCceEEEEeccchHHHHHHHHHH----CCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccc-c-----ccc-----
Q 035988 314 NSESGIVYCFSRKECEQVAQELRQ----RGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVA-F-----GMG----- 378 (692)
Q Consensus 314 ~~~~~IIf~~s~~~~e~l~~~L~~----~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~-~-----~~G----- 378 (692)
.+..++|.|+|+.-|.+.++.+.. .|+.+..+.|+++...|.... ..+|+|+|+. + ..+
T Consensus 114 ~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpgrl~fDyLrd~~~~~~ 187 (853)
T 2fsf_A 114 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNNEYGFDYLRDNMAFSP 187 (853)
T ss_dssp TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSG
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCchhhHHHHHhhhhccH
Confidence 567899999999999888877754 489999999999987655443 3789999974 1 122
Q ss_pred --cCCCCccEEE
Q 035988 379 --INKPDVRFVI 388 (692)
Q Consensus 379 --IDip~v~~VI 388 (692)
++..++.++|
T Consensus 188 ~~~~~~~l~~lV 199 (853)
T 2fsf_A 188 EERVQRKLHYAL 199 (853)
T ss_dssp GGCCCCSCCEEE
T ss_pred hHhcccCCcEEE
Confidence 4556777766
No 378
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=55.98 E-value=6.1 Score=40.06 Aligned_cols=21 Identities=33% Similarity=0.396 Sum_probs=17.3
Q ss_pred cCCCEEEEecCCChhHHHHHH
Q 035988 105 SGRDVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~~l 125 (692)
.+..+++.+|||+|||..+..
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~ 44 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARA 44 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHH
T ss_pred CCCcEEEECCCCchHHHHHHH
Confidence 356899999999999986643
No 379
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=55.60 E-value=5 Score=37.52 Aligned_cols=20 Identities=15% Similarity=0.285 Sum_probs=16.3
Q ss_pred cCCCEEEEecCCChhHHHHH
Q 035988 105 SGRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~~ 124 (692)
.|.-+.+.+|+|+|||...-
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~ 25 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVR 25 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 46678899999999997543
No 380
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=55.42 E-value=5.8 Score=38.00 Aligned_cols=20 Identities=15% Similarity=0.076 Sum_probs=16.5
Q ss_pred HcCCCEEEEecCCChhHHHH
Q 035988 104 LSGRDVLVIMAAGGGKSLCY 123 (692)
Q Consensus 104 l~g~dviv~apTGsGKTl~~ 123 (692)
-.|+-+.+++|+|+|||...
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35788999999999999754
No 381
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=55.36 E-value=12 Score=40.79 Aligned_cols=71 Identities=13% Similarity=0.103 Sum_probs=51.2
Q ss_pred CCceEEEEeccchHHHHHHHHHHC----CCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccc-----cccc-c-CCCC
Q 035988 315 SESGIVYCFSRKECEQVAQELRQR----GISADYYHADMDINAREKVHMRWSKNKLQVIVGTVA-----FGMG-I-NKPD 383 (692)
Q Consensus 315 ~~~~IIf~~s~~~~e~l~~~L~~~----g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~-----~~~G-I-Dip~ 383 (692)
+.++||.|+++.-+.++++.+... ++.+..+||+.+...+..... +..+|+|+|.- +..| + ++.+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 778999999999998888888765 899999999986554432221 23679999963 2222 3 5667
Q ss_pred ccEEEE
Q 035988 384 VRFVIH 389 (692)
Q Consensus 384 v~~VI~ 389 (692)
+++||.
T Consensus 128 ~~~vVi 133 (555)
T 3tbk_A 128 FTLMIF 133 (555)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788774
No 382
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=55.29 E-value=5.1 Score=37.52 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=16.5
Q ss_pred cCCCEEEEecCCChhHHHHH
Q 035988 105 SGRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~~ 124 (692)
.|.-+.+.+|+|||||...-
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~ 24 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRK 24 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 56778999999999997543
No 383
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=55.11 E-value=2.5 Score=44.07 Aligned_cols=59 Identities=14% Similarity=0.155 Sum_probs=0.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeCh
Q 035988 131 EGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTP 191 (692)
Q Consensus 131 ~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tp 191 (692)
.+++||.++++.-+....+.+++.|+.+..++|+.+..++..+...+..+ ..+|+|+|.
T Consensus 259 ~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~--~~~vlv~T~ 317 (394)
T 1fuu_A 259 VTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSG--SSRILISTD 317 (394)
T ss_dssp -------------------------------------------------------------
T ss_pred CCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCC--CCcEEEECC
Confidence 46899999999999999999999999999999999988888888877766 788999885
No 384
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=55.07 E-value=5.9 Score=37.12 Aligned_cols=17 Identities=29% Similarity=0.448 Sum_probs=14.5
Q ss_pred CCEEEEecCCChhHHHH
Q 035988 107 RDVLVIMAAGGGKSLCY 123 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~ 123 (692)
|-++++||+|+|||...
T Consensus 2 RpIVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 56899999999999743
No 385
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=54.91 E-value=11 Score=34.14 Aligned_cols=20 Identities=25% Similarity=0.410 Sum_probs=16.2
Q ss_pred CCCEEEEecCCChhHHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~l 125 (692)
+..+++.+|.|||||...-+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~ 23 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQ 23 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 46789999999999986543
No 386
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=54.76 E-value=9.6 Score=40.02 Aligned_cols=38 Identities=13% Similarity=0.337 Sum_probs=25.2
Q ss_pred cCCCEEEEecCCChhHHHHHHH---HHhcCCeEEEEcccHH
Q 035988 105 SGRDVLVIMAAGGGKSLCYQLP---AVLREGIALVVSPLLS 142 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~~lp---al~~~~~~lvi~Pt~~ 142 (692)
.+.++++.+|||+|||.....- ....+..++|+=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcC
Confidence 5678999999999999754321 1223566666666544
No 387
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=54.73 E-value=9 Score=39.27 Aligned_cols=33 Identities=15% Similarity=0.042 Sum_probs=20.6
Q ss_pred CCCEEEEecCCChhHHHHHHHHHhcCCeEEEEc
Q 035988 106 GRDVLVIMAAGGGKSLCYQLPAVLREGIALVVS 138 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~lpal~~~~~~lvi~ 138 (692)
++-+++.+|+|+|||...+--+...+.+++++.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs 155 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYAT 155 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEE
Confidence 455799999999999654332333444444443
No 388
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=54.70 E-value=4.6 Score=37.33 Aligned_cols=20 Identities=30% Similarity=0.358 Sum_probs=16.3
Q ss_pred cCCCEEEEecCCChhHHHHH
Q 035988 105 SGRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~~ 124 (692)
.|.-+++.+|.|+|||...-
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~ 27 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAE 27 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 46678999999999998543
No 389
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=54.53 E-value=17 Score=40.75 Aligned_cols=56 Identities=16% Similarity=0.160 Sum_probs=47.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChh
Q 035988 131 EGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPE 192 (692)
Q Consensus 131 ~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe 192 (692)
.+++||.++++.-++...+.|++.|+++..+++. .+..++..+..+ ..+|+|+|.-
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g--~~~VLVaTdv 410 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLT--DWDFVVTTDI 410 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHS--CCSEEEECGG
T ss_pred CCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCC--CcEEEEECcH
Confidence 5789999999999999999999999999999874 445566777776 8999999963
No 390
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=54.52 E-value=16 Score=39.83 Aligned_cols=72 Identities=15% Similarity=0.130 Sum_probs=49.6
Q ss_pred CCceEEEEeccchHHHHHHHHHHC----CCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccc-----cccc-c-CCCC
Q 035988 315 SESGIVYCFSRKECEQVAQELRQR----GISADYYHADMDINAREKVHMRWSKNKLQVIVGTVA-----FGMG-I-NKPD 383 (692)
Q Consensus 315 ~~~~IIf~~s~~~~e~l~~~L~~~----g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~-----~~~G-I-Dip~ 383 (692)
+.++||.|+++.-+.++++.++.. ++.+..+||+.+...+..... ...+|+|+|.- +..| + ++.+
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 778999999999999988888765 899999999987655432221 23679999963 2222 3 6777
Q ss_pred ccEEEEe
Q 035988 384 VRFVIHH 390 (692)
Q Consensus 384 v~~VI~~ 390 (692)
+++||.-
T Consensus 131 ~~~vViD 137 (556)
T 4a2p_A 131 FTLMIFD 137 (556)
T ss_dssp CSEEEEE
T ss_pred CCEEEEE
Confidence 8887743
No 391
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=54.46 E-value=6.1 Score=37.21 Aligned_cols=20 Identities=20% Similarity=0.107 Sum_probs=16.7
Q ss_pred HcCCCEEEEecCCChhHHHH
Q 035988 104 LSGRDVLVIMAAGGGKSLCY 123 (692)
Q Consensus 104 l~g~dviv~apTGsGKTl~~ 123 (692)
..|+-+++++|+|+|||...
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHH
Confidence 35778999999999999754
No 392
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=54.19 E-value=9.3 Score=33.59 Aligned_cols=39 Identities=18% Similarity=0.337 Sum_probs=34.2
Q ss_pred CCCCCceEEEEeccchHHHHHHHHHHCCC-ceeEeccCCC
Q 035988 312 YPNSESGIVYCFSRKECEQVAQELRQRGI-SADYYHADMD 350 (692)
Q Consensus 312 ~~~~~~~IIf~~s~~~~e~l~~~L~~~g~-~v~~~h~~~~ 350 (692)
.+++.+++|||.+-..+...+..|+..|+ .+..+.||+.
T Consensus 79 l~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 79 LDPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp CCTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred CCCCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 34778999999999999999999999999 5889999963
No 393
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=54.00 E-value=10 Score=33.52 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=34.0
Q ss_pred hCCCCCceEEEEeccchHHHHHHHHHHCCCc-eeEeccCCC
Q 035988 311 SYPNSESGIVYCFSRKECEQVAQELRQRGIS-ADYYHADMD 350 (692)
Q Consensus 311 ~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~-v~~~h~~~~ 350 (692)
..+++.+++|||.+-..+...+..|...|+. +..+.||+.
T Consensus 52 ~l~~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 92 (141)
T 3ilm_A 52 SLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 92 (141)
T ss_dssp TSCTTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHH
T ss_pred cCCCCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 4457788999999988899999999999985 888889863
No 394
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=53.81 E-value=21 Score=41.34 Aligned_cols=71 Identities=15% Similarity=0.130 Sum_probs=48.8
Q ss_pred CCceEEEEeccchHHHHHHHHHHC----CCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccc-----cccc-c-CCCC
Q 035988 315 SESGIVYCFSRKECEQVAQELRQR----GISADYYHADMDINAREKVHMRWSKNKLQVIVGTVA-----FGMG-I-NKPD 383 (692)
Q Consensus 315 ~~~~IIf~~s~~~~e~l~~~L~~~----g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~-----~~~G-I-Dip~ 383 (692)
+.++||.|+++.-+.+++..++.. ++.+..+||+.+...+..... +..+|+|+|.- +..+ + ++.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 788999999999999988888765 899999999987665433221 35789999963 2222 3 5667
Q ss_pred ccEEEE
Q 035988 384 VRFVIH 389 (692)
Q Consensus 384 v~~VI~ 389 (692)
+++||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788774
No 395
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=53.51 E-value=67 Score=37.45 Aligned_cols=17 Identities=24% Similarity=0.286 Sum_probs=14.7
Q ss_pred CEEEEecCCChhHHHHH
Q 035988 108 DVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 108 dviv~apTGsGKTl~~~ 124 (692)
.+++.+|||+|||....
T Consensus 590 ~vLl~Gp~GtGKT~lA~ 606 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAK 606 (854)
T ss_dssp EEEEBSCSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999998654
No 396
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=53.15 E-value=5.7 Score=36.52 Aligned_cols=19 Identities=26% Similarity=0.286 Sum_probs=15.7
Q ss_pred CCCEEEEecCCChhHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~ 124 (692)
+.-+++.++.|||||....
T Consensus 3 ~~~I~i~G~~GsGKsT~~~ 21 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQ 21 (192)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 5668999999999997543
No 397
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=53.13 E-value=5.4 Score=41.60 Aligned_cols=19 Identities=37% Similarity=0.338 Sum_probs=15.2
Q ss_pred cCCCEEEEecCCChhHHHH
Q 035988 105 SGRDVLVIMAAGGGKSLCY 123 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~ 123 (692)
.+.-+++.+|||||||...
T Consensus 122 ~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp SSEEEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3456899999999999643
No 398
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=53.10 E-value=8.3 Score=35.25 Aligned_cols=21 Identities=19% Similarity=0.113 Sum_probs=17.3
Q ss_pred cCCCEEEEecCCChhHHHHHH
Q 035988 105 SGRDVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~~l 125 (692)
.++.+++.+++|+|||.....
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~ 30 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKE 30 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHH
Confidence 467799999999999986543
No 399
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=52.91 E-value=4.8 Score=42.25 Aligned_cols=19 Identities=32% Similarity=0.272 Sum_probs=15.7
Q ss_pred cCCCEEEEecCCChhHHHH
Q 035988 105 SGRDVLVIMAAGGGKSLCY 123 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~ 123 (692)
.|..+++++|||||||...
T Consensus 135 ~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSEEEEEECSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667899999999999643
No 400
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=52.76 E-value=71 Score=33.58 Aligned_cols=27 Identities=19% Similarity=0.426 Sum_probs=21.1
Q ss_pred HHHHHHH---cCCCEEEEecCCChhHHHHH
Q 035988 98 EIINAVL---SGRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 98 ~ai~~il---~g~dviv~apTGsGKTl~~~ 124 (692)
.+|+..+ .|+.+.+.+|+|+|||....
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~ 192 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQ 192 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHH
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHH
Confidence 4556554 48899999999999997654
No 401
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=52.44 E-value=5.4 Score=39.28 Aligned_cols=19 Identities=32% Similarity=0.513 Sum_probs=15.8
Q ss_pred CCCEEEEecCCChhHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~ 124 (692)
.+.+++.+|+|+|||....
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 4569999999999998654
No 402
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=52.43 E-value=8.7 Score=39.65 Aligned_cols=16 Identities=13% Similarity=0.220 Sum_probs=13.7
Q ss_pred CEEEEecCCChhHHHH
Q 035988 108 DVLVIMAAGGGKSLCY 123 (692)
Q Consensus 108 dviv~apTGsGKTl~~ 123 (692)
-+++.+|||||||...
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 4789999999999754
No 403
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=51.94 E-value=8.5 Score=38.65 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=15.2
Q ss_pred CCEEEEecCCChhHHHHH
Q 035988 107 RDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~ 124 (692)
..+++.+|+|+|||..+.
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 368999999999997654
No 404
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=51.66 E-value=8.8 Score=40.58 Aligned_cols=15 Identities=27% Similarity=0.339 Sum_probs=13.0
Q ss_pred EEEEecCCChhHHHH
Q 035988 109 VLVIMAAGGGKSLCY 123 (692)
Q Consensus 109 viv~apTGsGKTl~~ 123 (692)
+++.+|||+|||...
T Consensus 5 i~i~GptgsGKttla 19 (409)
T 3eph_A 5 IVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEECSSSSHHHHH
T ss_pred EEEECcchhhHHHHH
Confidence 678999999999754
No 405
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=51.51 E-value=1.8e+02 Score=28.23 Aligned_cols=180 Identities=10% Similarity=0.074 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeC
Q 035988 141 LSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDE 220 (692)
Q Consensus 141 ~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDE 220 (692)
..++....+.+.+.|..+.+..... ........+.+... .++-+|..|..... .....+.. ..+.+|++|.
T Consensus 26 ~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~l~~~--~vdGiIi~~~~~~~--~~~~~l~~----~~iPvV~~~~ 96 (294)
T 3qk7_A 26 LEMISWIGIELGKRGLDLLLIPDEP-GEKYQSLIHLVETR--RVDALIVAHTQPED--FRLQYLQK----QNFPFLALGR 96 (294)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECT-TCCCHHHHHHHHHT--CCSEEEECSCCSSC--HHHHHHHH----TTCCEEEESC
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCC-hhhHHHHHHHHHcC--CCCEEEEeCCCCCh--HHHHHHHh----CCCCEEEECC
Confidence 3456666677788898887776653 22233344444443 56666665543322 23333332 3677888886
Q ss_pred ccc---ccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhh-HHHH---HHHhcccceEEEeccCCCCcceEEEeec
Q 035988 221 AHC---CSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKV-QNDL---MEMLHIRKCIKFVSTINRPNLFYMVREK 293 (692)
Q Consensus 221 aH~---l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~-~~~i---~~~l~~~~~~~~~~~~~r~~l~~~v~~~ 293 (692)
... +...+.+...................+.+++....... .... .+.+.-... .. .+.... . .
T Consensus 97 ~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~-----~~-~~~~~~--~-~ 167 (294)
T 3qk7_A 97 SHLPKPYAWFDFDNHAGASLAVKRLLELGHQRIAFVSTDARISYVDQRLQGYVQTMSEAGL-----MP-LAGYLQ--K-A 167 (294)
T ss_dssp CCCSSCCEEEEECHHHHHHHHHHHHHHTTCCCEEEEEESSCCHHHHHHHHHHHHHHHTTTC-----CC-CTTCEE--E-E
T ss_pred CCCCCCCCEEEcChHHHHHHHHHHHHHCCCceEEEEeCCcccchHHHHHHHHHHHHHHCCC-----CC-ChhHee--c-C
Confidence 421 11112222222222222222345667777776643221 1111 111211100 00 011111 1 1
Q ss_pred cCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCc
Q 035988 294 SSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGIS 341 (692)
Q Consensus 294 ~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~ 341 (692)
..........+.+++.. ...+.-|||.+...+..+.+.|++.|+.
T Consensus 168 ~~~~~~~~~~~~~~l~~---~~~~~ai~~~nd~~A~g~~~al~~~G~~ 212 (294)
T 3qk7_A 168 DPTRPGGYLAASRLLAL---EVPPTAIITDCNMLGDGVASALDKAGLL 212 (294)
T ss_dssp CSSHHHHHHHHHHHHHS---SSCCSEEEESSHHHHHHHHHHHHHTTCS
T ss_pred CCCHHHHHHHHHHHHcC---CCCCcEEEECCHHHHHHHHHHHHHcCCC
Confidence 11223344556666653 3567889999988888999999887764
No 406
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=51.41 E-value=6.5 Score=36.34 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=16.9
Q ss_pred cCCCEEEEecCCChhHHHHHH
Q 035988 105 SGRDVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~~l 125 (692)
.+..+++.+++|||||.+.-.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~ 29 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEM 29 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 356799999999999986543
No 407
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=51.34 E-value=30 Score=39.51 Aligned_cols=84 Identities=13% Similarity=0.169 Sum_probs=62.1
Q ss_pred HhcCCeEEEEcccHHHHHHHHHHHHHc------------------C---------------CCEEEEecCCChhHHHHHH
Q 035988 128 VLREGIALVVSPLLSLIQDQVMCLAAL------------------G---------------IPAHMLTSTTSKEDEKFIY 174 (692)
Q Consensus 128 l~~~~~~lvi~Pt~~L~~q~~~~l~~~------------------g---------------i~~~~~~~~~~~~~~~~~~ 174 (692)
+..++.+||.+|++.-+......+.+. + ..+..++++.+..++..+.
T Consensus 234 ~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~ 313 (720)
T 2zj8_A 234 IRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVE 313 (720)
T ss_dssp HHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred HhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHH
Confidence 445689999999999998888877653 1 2488999999999999999
Q ss_pred HHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCccccc
Q 035988 175 KALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCS 225 (692)
Q Consensus 175 ~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEaH~l~ 225 (692)
..+..+ ..+|+|+|.- +. ...++..+. +|||....+.
T Consensus 314 ~~f~~g--~~~vlvaT~~-l~----------~Gvdip~~~-~VI~~~~~yd 350 (720)
T 2zj8_A 314 ENFRKG--IIKAVVATPT-LS----------AGINTPAFR-VIIRDIWRYS 350 (720)
T ss_dssp HHHHTT--SSCEEEECST-TG----------GGCCCCBSE-EEECCSEECC
T ss_pred HHHHCC--CCeEEEECcH-hh----------ccCCCCceE-EEEcCCeeec
Confidence 988887 8999999953 32 233445554 5677555443
No 408
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=51.25 E-value=9 Score=34.04 Aligned_cols=38 Identities=16% Similarity=0.350 Sum_probs=33.4
Q ss_pred CCCCceEEEEecc--chHHHHHHHHHHCCCceeEeccCCC
Q 035988 313 PNSESGIVYCFSR--KECEQVAQELRQRGISADYYHADMD 350 (692)
Q Consensus 313 ~~~~~~IIf~~s~--~~~e~l~~~L~~~g~~v~~~h~~~~ 350 (692)
+++.+++|||.+- ..+...+..|+..|+.+..+.||+.
T Consensus 70 ~~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 70 SKEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp CTTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 3678899999997 6899999999999999999999963
No 409
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=51.15 E-value=53 Score=32.37 Aligned_cols=80 Identities=10% Similarity=0.096 Sum_probs=60.4
Q ss_pred cCCChhHHHH--HHHHH-hcCCeEEEEcccHHHHHHHHHHHHH-cCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEe
Q 035988 114 AAGGGKSLCY--QLPAV-LREGIALVVSPLLSLIQDQVMCLAA-LGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYV 189 (692)
Q Consensus 114 pTGsGKTl~~--~lpal-~~~~~~lvi~Pt~~L~~q~~~~l~~-~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~ 189 (692)
...+||-... ++..+ ..+.++||.+.++..+......+.. .|+++..++|+.+..++......+..+. .+.++++
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~-~~~v~L~ 170 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNP-SVKFIVL 170 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCT-TCCEEEE
T ss_pred cccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCC-CCCEEEE
Confidence 4568887543 23333 2467999999999999999999987 5999999999999999988888888762 3555555
Q ss_pred Chhhh
Q 035988 190 TPEKI 194 (692)
Q Consensus 190 Tpe~l 194 (692)
++...
T Consensus 171 st~~~ 175 (271)
T 1z5z_A 171 SVKAG 175 (271)
T ss_dssp ECCTT
T ss_pred ehhhh
Confidence 55544
No 410
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=51.09 E-value=13 Score=31.04 Aligned_cols=39 Identities=10% Similarity=0.264 Sum_probs=33.8
Q ss_pred CCCCCceEEEEeccchHHHHHHHHHHCCCceeEeccCCC
Q 035988 312 YPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMD 350 (692)
Q Consensus 312 ~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~ 350 (692)
..++.+++|||.+-..+...+..|+..|+....+.||+.
T Consensus 53 ~~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 53 QHKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp SCSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred cCCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 347889999999998999999999999986688889874
No 411
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=50.91 E-value=6.6 Score=35.37 Aligned_cols=17 Identities=12% Similarity=-0.193 Sum_probs=14.1
Q ss_pred CEEEEecCCChhHHHHH
Q 035988 108 DVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 108 dviv~apTGsGKTl~~~ 124 (692)
-+++.+|.|+|||....
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999998654
No 412
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=50.84 E-value=12 Score=36.43 Aligned_cols=18 Identities=28% Similarity=0.421 Sum_probs=14.9
Q ss_pred CCEEEEecCCChhHHHHH
Q 035988 107 RDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~ 124 (692)
+.+++.+|+|+|||....
T Consensus 50 ~g~ll~G~~G~GKTtl~~ 67 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLAR 67 (254)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 349999999999997543
No 413
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=50.77 E-value=38 Score=39.38 Aligned_cols=69 Identities=12% Similarity=0.135 Sum_probs=52.4
Q ss_pred CCCceEEEEeccchHHHHHHHHHH----CCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccc-c-----c-------
Q 035988 314 NSESGIVYCFSRKECEQVAQELRQ----RGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVA-F-----G------- 376 (692)
Q Consensus 314 ~~~~~IIf~~s~~~~e~l~~~L~~----~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~-~-----~------- 376 (692)
.+..++|.|+|+.-|...++++.. .|+.+.++.|+++.++|.... ..+|+++|+. + -
T Consensus 151 ~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTpgrlgfDyLrD~m~~~~ 224 (922)
T 1nkt_A 151 AGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTNNEFGFDYLRDNMAHSL 224 (922)
T ss_dssp TTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSG
T ss_pred hCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchHhhHHHHHhhhhccH
Confidence 567899999999998888777754 499999999999987766543 3689999973 1 1
Q ss_pred cccCCCCccEEE
Q 035988 377 MGINKPDVRFVI 388 (692)
Q Consensus 377 ~GIDip~v~~VI 388 (692)
..++..+++++|
T Consensus 225 ~~l~lr~l~~lI 236 (922)
T 1nkt_A 225 DDLVQRGHHYAI 236 (922)
T ss_dssp GGCCCCCCCEEE
T ss_pred hhhccCCCCEEE
Confidence 135556777766
No 414
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=50.52 E-value=6.9 Score=36.96 Aligned_cols=22 Identities=27% Similarity=0.252 Sum_probs=16.8
Q ss_pred HHHcCCCEEEEecCCChhHHHH
Q 035988 102 AVLSGRDVLVIMAAGGGKSLCY 123 (692)
Q Consensus 102 ~il~g~dviv~apTGsGKTl~~ 123 (692)
.+-.|+-+.+.+|+|+|||...
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 4567888999999999999754
No 415
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=50.31 E-value=6.8 Score=35.59 Aligned_cols=17 Identities=35% Similarity=0.405 Sum_probs=14.0
Q ss_pred CEEEEecCCChhHHHHH
Q 035988 108 DVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 108 dviv~apTGsGKTl~~~ 124 (692)
-+++.+++|||||....
T Consensus 4 ~I~i~G~~GsGKST~a~ 20 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAR 20 (181)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEecCCCCCHHHHHH
Confidence 36899999999998553
No 416
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=49.96 E-value=16 Score=31.78 Aligned_cols=37 Identities=14% Similarity=0.047 Sum_probs=32.9
Q ss_pred CCCceEEEEeccchHHHHHHHHHHCCCc-eeEeccCCC
Q 035988 314 NSESGIVYCFSRKECEQVAQELRQRGIS-ADYYHADMD 350 (692)
Q Consensus 314 ~~~~~IIf~~s~~~~e~l~~~L~~~g~~-v~~~h~~~~ 350 (692)
++.+++|||.+-..+...+..|...|+. +..+.||+.
T Consensus 73 ~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 73 ENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 5788999999998999999999999995 888999984
No 417
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=49.91 E-value=16 Score=39.26 Aligned_cols=55 Identities=18% Similarity=0.201 Sum_probs=45.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeCh
Q 035988 131 EGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTP 191 (692)
Q Consensus 131 ~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tp 191 (692)
.+.+||.+|++.-++...+.|++.|+.+..+++... ...+..+..+ ..+|+|+|.
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g--~~~vLVaT~ 242 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLT--DWDFVVTTD 242 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSS--CCSEEEECG
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccC--CceEEEECC
Confidence 468999999999999999999999999998887543 3445555555 899999995
No 418
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=49.85 E-value=13 Score=36.97 Aligned_cols=18 Identities=33% Similarity=0.421 Sum_probs=15.0
Q ss_pred CCEEEEecCCChhHHHHH
Q 035988 107 RDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~ 124 (692)
+.+++.+|+|+|||...-
T Consensus 45 ~GvlL~Gp~GtGKTtLak 62 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAK 62 (274)
T ss_dssp SEEEEESSTTSCHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 349999999999998543
No 419
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=49.85 E-value=7.7 Score=41.82 Aligned_cols=19 Identities=37% Similarity=0.471 Sum_probs=16.1
Q ss_pred CCCEEEEecCCChhHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~ 124 (692)
++.+++.+|+|+|||..+.
T Consensus 63 ~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHH
Confidence 3579999999999998654
No 420
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=49.53 E-value=47 Score=22.61 Aligned_cols=34 Identities=38% Similarity=0.679 Sum_probs=27.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035988 4 EEILQELENVEAEVRLVQEQIKQLVDRQDQLYER 37 (692)
Q Consensus 4 ~~~~~el~~~~~~l~~~~~~~~~~~~~~~~~~~~ 37 (692)
|.+-+....++.++..+..++.+++.+.+++.+.
T Consensus 5 ~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 5 EELIQNMDRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566778899999999999999998888887654
No 421
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=49.50 E-value=8.7 Score=39.30 Aligned_cols=19 Identities=37% Similarity=0.336 Sum_probs=16.2
Q ss_pred CCCEEEEecCCChhHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~ 124 (692)
...+++.||+|+|||....
T Consensus 45 ~~~vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVR 63 (350)
T ss_dssp GCCEEEECCGGGCTTHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 4579999999999998654
No 422
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=49.35 E-value=3.6 Score=45.14 Aligned_cols=75 Identities=16% Similarity=0.178 Sum_probs=55.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhc
Q 035988 131 EGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHA 210 (692)
Q Consensus 131 ~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~ 210 (692)
++++||.++++.-+......+.+.|..+..++|+....++..+.+.+..+ ..+|+|+|-- + ....++
T Consensus 357 ~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g--~~~VLVaT~~-l----------~~GiDi 423 (508)
T 3fho_A 357 IGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVG--TSKVLVTTNV-I----------ARGIDV 423 (508)
T ss_dssp CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSS--SCCCCEECC----------------CCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCC--CCeEEEeCCh-h----------hcCCCc
Confidence 47899999999999999999999999999999999888888888888777 8899999952 2 233455
Q ss_pred CCceEEEE
Q 035988 211 GRLSLISI 218 (692)
Q Consensus 211 ~~l~~iVI 218 (692)
..+++||.
T Consensus 424 p~v~~VI~ 431 (508)
T 3fho_A 424 SQVNLVVN 431 (508)
T ss_dssp TTCCEEEC
T ss_pred cCCCEEEE
Confidence 67777774
No 423
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=49.34 E-value=6.2 Score=36.10 Aligned_cols=19 Identities=32% Similarity=0.305 Sum_probs=15.6
Q ss_pred CCCEEEEecCCChhHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~ 124 (692)
|.-+.+++|.|||||..+-
T Consensus 9 gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SEEEEEECCTTSCHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHH
Confidence 5567899999999998554
No 424
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=49.29 E-value=11 Score=37.10 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=18.6
Q ss_pred HcCCCEEEEecCCChhHHHHHH
Q 035988 104 LSGRDVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 104 l~g~dviv~apTGsGKTl~~~l 125 (692)
+.|+.+++.++.|+|||...-+
T Consensus 46 l~g~~i~l~G~~GsGKSTl~~~ 67 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTVGKI 67 (250)
T ss_dssp HTTCCEEEECSTTSCHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHH
Confidence 3489999999999999986644
No 425
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=49.01 E-value=1.9e+02 Score=27.95 Aligned_cols=181 Identities=8% Similarity=0.030 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHcCCCEEEE-ecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeC
Q 035988 142 SLIQDQVMCLAALGIPAHML-TSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDE 220 (692)
Q Consensus 142 ~L~~q~~~~l~~~gi~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDE 220 (692)
.+..-..+.+++.|..+.++ .+.............+... .++-+|..|............+.. ..+.+|++|.
T Consensus 21 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~--~vdgiIi~~~~~~~~~~~~~~~~~----~~iPvV~~~~ 94 (305)
T 3g1w_A 21 RCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAK--NPAGIAISAIDPVELTDTINKAVD----AGIPIVLFDS 94 (305)
T ss_dssp HHHHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHH--CCSEEEECCSSTTTTHHHHHHHHH----TTCCEEEESS
T ss_pred HHHHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHh--CCCEEEEcCCCHHHHHHHHHHHHH----CCCcEEEECC
Confidence 44555666777788888773 4555555555555555544 677666665432211223333332 3677888885
Q ss_pred ccc----ccccCCCchHH-HHHHHHHHhhCC-CCCEEEEecccchhhHHHH---HHHhcccceEEEeccCCCCcceE-EE
Q 035988 221 AHC----CSQWGHDFRPD-YKNLGILKTQFP-DVPMMALTATATQKVQNDL---MEMLHIRKCIKFVSTINRPNLFY-MV 290 (692)
Q Consensus 221 aH~----l~~~g~~fr~~-~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i---~~~l~~~~~~~~~~~~~r~~l~~-~v 290 (692)
... +...+.+.... +.....+....+ ...+.+++........... .+.+.-. .+.... .+
T Consensus 95 ~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~R~~gf~~~l~~~----------~~~~~~~~~ 164 (305)
T 3g1w_A 95 GAPDSHAHSFLGTNNYNAGMNAAYKMAELLDGEGEVAVITLPNQLNHQERTTGFKETLEAE----------FPAIEVIAV 164 (305)
T ss_dssp CCTTSCCSCEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECTTCHHHHHHHHHHHHHHHHH----------CTTEEEEEE
T ss_pred CCCCCceeEEECcCHHHHHHHHHHHHHHHhCCCcEEEEEeCCCcccHHHHHHHHHHHHHhh----------CCCCEEEEE
Confidence 321 11122222222 233334555544 4455566654322211111 1111100 011111 11
Q ss_pred eeccCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCc
Q 035988 291 REKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGIS 341 (692)
Q Consensus 291 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~ 341 (692)
.............+.+++.. ...+..|||.+-..+..+.+.|++.|+.
T Consensus 165 ~~~~~~~~~~~~~~~~~l~~---~~~~~ai~~~~d~~a~g~~~al~~~g~~ 212 (305)
T 3g1w_A 165 EDGRGDSLHSRRVAHQLLED---YPNLAGIFATEANGGVGVGDAVRLESRA 212 (305)
T ss_dssp EECTTCHHHHHHHHHHHHHH---CTTEEEEEESSHHHHHHHHHHHHHTTCT
T ss_pred ecCCCCHHHHHHHHHHHHHh---CCCceEEEECCCcchhhHHHHHHhcCCC
Confidence 11122223445566666654 3467899999999999999999998873
No 426
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=48.96 E-value=33 Score=39.01 Aligned_cols=63 Identities=19% Similarity=0.254 Sum_probs=51.7
Q ss_pred HhcCCeEEEEcccHHHHHHHHHHHHHc------------------------------CCCEEEEecCCChhHHHHHHHHH
Q 035988 128 VLREGIALVVSPLLSLIQDQVMCLAAL------------------------------GIPAHMLTSTTSKEDEKFIYKAL 177 (692)
Q Consensus 128 l~~~~~~lvi~Pt~~L~~q~~~~l~~~------------------------------gi~~~~~~~~~~~~~~~~~~~~l 177 (692)
+..++.+||.+|++.-+......+... +..+..++|+.+..++..+...+
T Consensus 239 ~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f 318 (702)
T 2p6r_A 239 VAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAF 318 (702)
T ss_dssp HHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHH
T ss_pred HhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHH
Confidence 445789999999999988888777642 13467899999999999999888
Q ss_pred HhcCCCccEEEeChh
Q 035988 178 EKGEGELKMLYVTPE 192 (692)
Q Consensus 178 ~~~~~~~~Ili~Tpe 192 (692)
..+ ..+|+|+|.-
T Consensus 319 ~~g--~~~vlvaT~~ 331 (702)
T 2p6r_A 319 RRG--NIKVVVATPT 331 (702)
T ss_dssp HTT--SCCEEEECST
T ss_pred HCC--CCeEEEECcH
Confidence 877 8999999964
No 427
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=48.52 E-value=36 Score=39.74 Aligned_cols=55 Identities=15% Similarity=0.019 Sum_probs=45.4
Q ss_pred CCCceEEEEeccchHHHHHHHHHH----CCCceeEeccCCCHHHHHHHHHHHhcCCCcEEEeccc
Q 035988 314 NSESGIVYCFSRKECEQVAQELRQ----RGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVA 374 (692)
Q Consensus 314 ~~~~~IIf~~s~~~~e~l~~~L~~----~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~ 374 (692)
.+..++|.|+|+.-|...++.+.. .|+.+..+.|+++.++|.... ..+|+|+|+.
T Consensus 119 ~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTpg 177 (997)
T 2ipc_A 119 TGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTNS 177 (997)
T ss_dssp TCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEHH
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECch
Confidence 577899999999988888877764 499999999999987776654 3789999974
No 428
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=48.35 E-value=44 Score=27.70 Aligned_cols=49 Identities=14% Similarity=0.320 Sum_probs=40.3
Q ss_pred EEEEeccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCc
Q 035988 319 IVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQ 367 (692)
Q Consensus 319 IIf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ 367 (692)
+||....+-..++...++..|..+..+.++.+.+.|.+.++.|.....+
T Consensus 6 vvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvd 54 (162)
T 2l82_A 6 VVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVD 54 (162)
T ss_dssp EEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCE
T ss_pred EEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCc
Confidence 4566666677788888899999999999999999999999999865433
No 429
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=48.28 E-value=7.8 Score=36.32 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=16.4
Q ss_pred cCCCEEEEecCCChhHHHHH
Q 035988 105 SGRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~~ 124 (692)
.|.-+++.+|.|+|||...-
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~ 47 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAH 47 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 36678999999999997553
No 430
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=48.25 E-value=10 Score=35.32 Aligned_cols=32 Identities=22% Similarity=0.057 Sum_probs=21.1
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCeEEEEcccH
Q 035988 109 VLVIMAAGGGKSLCYQLPAVLREGIALVVSPLL 141 (692)
Q Consensus 109 viv~apTGsGKTl~~~lpal~~~~~~lvi~Pt~ 141 (692)
+++.+++|||||.-+.--+.. +..++++..-.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 689999999999654322222 45666766643
No 431
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=47.86 E-value=14 Score=35.32 Aligned_cols=43 Identities=16% Similarity=0.074 Sum_probs=26.2
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHcC----CCEEEEecCCChhHHHH
Q 035988 78 RADDVRLNVFGIPAYRANQQEIINAVLSG----RDVLVIMAAGGGKSLCY 123 (692)
Q Consensus 78 ~~~~~l~~~fg~~~~r~~Q~~ai~~il~g----~dviv~apTGsGKTl~~ 123 (692)
.+.+.|+ +-|+ .|-.+ ...+..++.+ +.+++.+|.|+|||..+
T Consensus 29 ~I~~~l~-yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 29 PIVQFLR-YQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHH-HTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHH-HcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 3445554 2232 44444 4455556654 24899999999999754
No 432
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=47.80 E-value=15 Score=33.71 Aligned_cols=18 Identities=28% Similarity=0.218 Sum_probs=14.4
Q ss_pred CEEEEecCCChhHHHHHH
Q 035988 108 DVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 108 dviv~apTGsGKTl~~~l 125 (692)
-+++.+|.|+|||...-.
T Consensus 4 ii~l~G~~GaGKSTl~~~ 21 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKR 21 (189)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 467899999999986543
No 433
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=47.36 E-value=8.1 Score=37.11 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=16.4
Q ss_pred HHcCCCEEEEecCCChhHHHH
Q 035988 103 VLSGRDVLVIMAAGGGKSLCY 123 (692)
Q Consensus 103 il~g~dviv~apTGsGKTl~~ 123 (692)
+-.|+-+.+++|.|+|||...
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHH
Confidence 345777899999999999754
No 434
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=47.18 E-value=2e+02 Score=27.59 Aligned_cols=188 Identities=12% Similarity=0.189 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhh---chHHHHHHHHhhhhcCCceEEE
Q 035988 141 LSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKIS---KSKRFMSKLEKCHHAGRLSLIS 217 (692)
Q Consensus 141 ~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~---~~~~~~~~l~~~~~~~~l~~iV 217 (692)
..+.....+.+.+.|..+.+................+... .++-+|..|..-. ........+.. ..+.+|+
T Consensus 31 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~~~~~~~~~~~~~~~~~~----~~iPvV~ 104 (298)
T 3tb6_A 31 PSIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQ--HIDGLIVEPTKSALQTPNIGYYLNLEK----NGIPFAM 104 (298)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHT--CCSEEEECCSSTTSCCTTHHHHHHHHH----TTCCEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHC--CCCEEEEecccccccCCcHHHHHHHHh----cCCCEEE
Confidence 3456666677888899888887776666555556666554 6776766653211 11123333332 3677888
Q ss_pred EeCccc---ccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhHHHHHHHhcccceEEEeccCC-CCcceEEEeec
Q 035988 218 IDEAHC---CSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTIN-RPNLFYMVREK 293 (692)
Q Consensus 218 IDEaH~---l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~-r~~l~~~v~~~ 293 (692)
+|-... +...+.+.......+...........+.+++............-+. .... ..... .+...... ..
T Consensus 105 ~~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~R~~gf~---~~l~-~~g~~~~~~~~~~~-~~ 179 (298)
T 3tb6_A 105 INASYAELAAPSFTLDDVKGGMMAAEHLLSLGHTHMMGIFKADDTQGVKRMNGFI---QAHR-ERELFPSPDMIVTF-TT 179 (298)
T ss_dssp ESSCCTTCSSCEEEECHHHHHHHHHHHHHHTTCCSEEEEEESSSHHHHHHHHHHH---HHHH-HTTCCCCGGGEEEE-CH
T ss_pred EecCcCCCCCCEEEeCcHHHHHHHHHHHHHCCCCcEEEEcCCCCccHHHHHHHHH---HHHH-HcCCCCCcceEEEe-cc
Confidence 885321 1111222333333332333334556676776554422222111111 1000 00000 01111111 11
Q ss_pred cCcchHHHHHHHHHHHHhCCCCC-ceEEEEeccchHHHHHHHHHHCCCc
Q 035988 294 SSVGKVVIDEIAKYIQESYPNSE-SGIVYCFSRKECEQVAQELRQRGIS 341 (692)
Q Consensus 294 ~~~~~~~~~~l~~~l~~~~~~~~-~~IIf~~s~~~~e~l~~~L~~~g~~ 341 (692)
..........+.+++... +.. +.-|||.+...+..+.+.|++.|+.
T Consensus 180 ~~~~~~~~~~~~~~l~~~--~~~~~~ai~~~~d~~a~g~~~al~~~g~~ 226 (298)
T 3tb6_A 180 EEKESKLLEKVKATLEKN--SKHMPTAILCYNDEIALKVIDMLREMDLK 226 (298)
T ss_dssp HHHTTHHHHHHHHHHHHT--TTSCCSEEECSSHHHHHHHHHHHHHTTCC
T ss_pred cchhhhHHHHHHHHHhcC--CCCCCeEEEEeCcHHHHHHHHHHHHcCCC
Confidence 111111245566666643 222 7889999988888999999888764
No 435
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=47.16 E-value=14 Score=37.14 Aligned_cols=69 Identities=12% Similarity=0.112 Sum_probs=47.7
Q ss_pred CCceEEEEeccchHHHHHHHHHHC-----CCceeEeccCCCHHHHHHHHHHHhcCCCcEEEecccc------c-cccCCC
Q 035988 315 SESGIVYCFSRKECEQVAQELRQR-----GISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAF------G-MGINKP 382 (692)
Q Consensus 315 ~~~~IIf~~s~~~~e~l~~~L~~~-----g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILVaT~~~------~-~GIDip 382 (692)
+.++||.++|+.-|.+++..++.. ++.+..++|+.+...+ .....+|+|+|.-- . ..+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 347999999999999998888764 4667777777543211 13456899999732 1 346677
Q ss_pred CccEEEEe
Q 035988 383 DVRFVIHH 390 (692)
Q Consensus 383 ~v~~VI~~ 390 (692)
+++++|.-
T Consensus 235 ~l~~lVlD 242 (300)
T 3fmo_B 235 KIKVFVLD 242 (300)
T ss_dssp GCSEEEET
T ss_pred hceEEEEe
Confidence 78877743
No 436
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=47.14 E-value=78 Score=26.16 Aligned_cols=57 Identities=12% Similarity=0.033 Sum_probs=40.1
Q ss_pred CCCceEEEEec------cchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEE
Q 035988 314 NSESGIVYCFS------RKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIV 370 (692)
Q Consensus 314 ~~~~~IIf~~s------~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILV 370 (692)
...+++||..+ ...|..+...|.+.|+....+.=...++.+....+......+..++
T Consensus 16 ~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~tvP~if 78 (109)
T 3ipz_A 16 NSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPTFPQLY 78 (109)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCSSSCEEE
T ss_pred ccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCCCCCeEE
Confidence 56789999874 8889999999999999877766555566666555543333344343
No 437
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=47.12 E-value=7 Score=35.55 Aligned_cols=19 Identities=21% Similarity=0.246 Sum_probs=15.5
Q ss_pred CCCEEEEecCCChhHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~ 124 (692)
|.-+++.+|.|||||...-
T Consensus 8 g~~i~l~G~~GsGKSTl~~ 26 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVAS 26 (175)
T ss_dssp SEEEEEECSTTSCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4568899999999998653
No 438
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=46.62 E-value=68 Score=34.96 Aligned_cols=49 Identities=18% Similarity=0.111 Sum_probs=28.5
Q ss_pred CCCEEEEecCCChhHHHHH-HHHHh--cCCeEEEEcccHHHHHHHHHHHHHcC
Q 035988 106 GRDVLVIMAAGGGKSLCYQ-LPAVL--REGIALVVSPLLSLIQDQVMCLAALG 155 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~-lpal~--~~~~~lvi~Pt~~L~~q~~~~l~~~g 155 (692)
|.-+++.+|+|+|||.... +.... .+.+++++++-.. ..+....+..+|
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~-~~~l~~~~~~~g 332 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENACANKERAILFAYEES-RAQLLRNAYSWG 332 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSC-HHHHHHHHHTTS
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcC
Confidence 5668899999999996433 22221 2445677765432 234444444444
No 439
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=46.53 E-value=2.3e+02 Score=28.14 Aligned_cols=177 Identities=8% Similarity=0.007 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeC
Q 035988 141 LSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDE 220 (692)
Q Consensus 141 ~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDE 220 (692)
..++.-..+.+.+.|..+.+................+... .++-+|..|.... ......+.. ..+.+|++|.
T Consensus 84 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~--~vdGiIi~~~~~~--~~~~~~l~~----~~iPvV~i~~ 155 (344)
T 3kjx_A 84 PEVLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYEMLSW--RPSGVIIAGLEHS--EAARAMLDA----AGIPVVEIMD 155 (344)
T ss_dssp HHHHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHHTT--CCSEEEEECSCCC--HHHHHHHHH----CSSCEEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhC--CCCEEEEECCCCC--HHHHHHHHh----CCCCEEEEeC
Confidence 4456666677777888887777666666555555555544 5565555443221 123333332 3677888843
Q ss_pred ccc---ccccCCCch-HHHHHHHHHHhhCCCCCEEEEeccc--chhhHHHHH---HHh---cccceEEEeccCCCCcceE
Q 035988 221 AHC---CSQWGHDFR-PDYKNLGILKTQFPDVPMMALTATA--TQKVQNDLM---EML---HIRKCIKFVSTINRPNLFY 288 (692)
Q Consensus 221 aH~---l~~~g~~fr-~~~~~l~~l~~~~~~~~~i~lSAT~--~~~~~~~i~---~~l---~~~~~~~~~~~~~r~~l~~ 288 (692)
... ....+.+.. ..+.....|... ....+.+++... ......... +.+ +++.. ..
T Consensus 156 ~~~~~~~~~V~~D~~~~~~~a~~~L~~~-G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~------------~~ 222 (344)
T 3kjx_A 156 SDGKPVDAMVGISHRRAGREMAQAILKA-GYRRIGFMGTKMPLDYRARKRFEGFTEVLGKNGVEIE------------DR 222 (344)
T ss_dssp CSSCCSSEEEEECHHHHHHHHHHHHHHH-TCCSCCEEESSTTTCHHHHHHHHHHHHHHHHTTCCCS------------CE
T ss_pred CCCCCCCCEEEECcHHHHHHHHHHHHHC-CCCeEEEEecCcccCccHHHHHHHHHHHHHHcCCCCC------------hh
Confidence 211 111112222 222222233333 444566666554 222222111 111 11110 00
Q ss_pred EEeeccCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCc
Q 035988 289 MVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGIS 341 (692)
Q Consensus 289 ~v~~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~ 341 (692)
.+.............+.+++.. ...+.-|||.+...+..+...|++.|+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~ll~~---~~~~~ai~~~nd~~A~g~~~al~~~g~~ 272 (344)
T 3kjx_A 223 EFYSGGSALAKGREMTQAMLER---SPDLDFLYYSNDMIAAGGLLYLLEQGID 272 (344)
T ss_dssp EECSSCCCHHHHHHHHHHHHHH---STTCCEEEESSHHHHHHHHHHHHHTTCC
T ss_pred eEEeCCCCHHHHHHHHHHHHhc---CCCCCEEEECCHHHHHHHHHHHHHcCCC
Confidence 1111111122334556666654 3457889999988888899999888764
No 440
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=46.49 E-value=13 Score=42.64 Aligned_cols=26 Identities=27% Similarity=0.553 Sum_probs=21.7
Q ss_pred HHHHHHHcCCC--EEEEecCCChhHHHH
Q 035988 98 EIINAVLSGRD--VLVIMAAGGGKSLCY 123 (692)
Q Consensus 98 ~ai~~il~g~d--viv~apTGsGKTl~~ 123 (692)
..+..+++|.+ +++.+.||||||.+.
T Consensus 453 ~~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 453 QLIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCceEEEEccCCCCCchhhcc
Confidence 36778889987 678899999999875
No 441
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=46.43 E-value=15 Score=36.33 Aligned_cols=18 Identities=28% Similarity=0.421 Sum_probs=14.9
Q ss_pred CCEEEEecCCChhHHHHH
Q 035988 107 RDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~ 124 (692)
+.+++.+|+|+|||....
T Consensus 74 ~gvll~Gp~GtGKTtl~~ 91 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLAR 91 (278)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCcChHHHHHH
Confidence 349999999999997554
No 442
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=46.34 E-value=17 Score=41.99 Aligned_cols=76 Identities=14% Similarity=0.106 Sum_probs=56.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHHH-----------cCCCEEEEecCCChhHHHHHHHHHH---hcCCCccEEEeChhhhhc
Q 035988 131 EGIALVVSPLLSLIQDQVMCLAA-----------LGIPAHMLTSTTSKEDEKFIYKALE---KGEGELKMLYVTPEKISK 196 (692)
Q Consensus 131 ~~~~lvi~Pt~~L~~q~~~~l~~-----------~gi~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~Ili~Tpe~l~~ 196 (692)
++.+||.+|++.-+...++.+.+ .++.+..++|+.+..++..++.... .+.+..+|||+|.- +
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~i-a-- 379 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNI-A-- 379 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTH-H--
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcH-H--
Confidence 68999999999999999888875 4778899999999888877766554 00238899999953 1
Q ss_pred hHHHHHHHHhhhhcCCceEEE
Q 035988 197 SKRFMSKLEKCHHAGRLSLIS 217 (692)
Q Consensus 197 ~~~~~~~l~~~~~~~~l~~iV 217 (692)
.....+..+.+||
T Consensus 380 --------e~GidIp~v~~VI 392 (773)
T 2xau_A 380 --------ETSLTIDGIVYVV 392 (773)
T ss_dssp --------HHTCCCTTEEEEE
T ss_pred --------HhCcCcCCeEEEE
Confidence 2334555666555
No 443
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=46.29 E-value=16 Score=39.24 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=16.2
Q ss_pred CCCEEEEecCCChhHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~ 124 (692)
.+++++.+|+|+|||....
T Consensus 50 ~~~iLl~GppGtGKT~lar 68 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIAR 68 (444)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 4679999999999998654
No 444
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=46.24 E-value=1.1e+02 Score=29.10 Aligned_cols=87 Identities=11% Similarity=0.051 Sum_probs=58.1
Q ss_pred cCCCEEEEecCC-ChhHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChh-HHHHHHHHHHhcCC
Q 035988 105 SGRDVLVIMAAG-GGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKE-DEKFIYKALEKGEG 182 (692)
Q Consensus 105 ~g~dviv~apTG-sGKTl~~~lpal~~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~-~~~~~~~~l~~~~~ 182 (692)
.++.++|.+.|| -|+.++-.+ +..+..++++....+-..+....++..+.++..+..+.... ........+....+
T Consensus 4 ~~k~vlITGas~gIG~~~a~~l--~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (247)
T 3lyl_A 4 NEKVALVTGASRGIGFEVAHAL--ASKGATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAENL 81 (247)
T ss_dssp TTCEEEESSCSSHHHHHHHHHH--HHTTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCChHHHHHHHHH--HHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 467777777665 488776655 23466777777777767777788888888888887776543 33444455544445
Q ss_pred CccEEEeChhh
Q 035988 183 ELKMLYVTPEK 193 (692)
Q Consensus 183 ~~~Ili~Tpe~ 193 (692)
..+++|-+...
T Consensus 82 ~id~li~~Ag~ 92 (247)
T 3lyl_A 82 AIDILVNNAGI 92 (247)
T ss_dssp CCSEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 67888877663
No 445
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=46.23 E-value=2.1e+02 Score=27.49 Aligned_cols=179 Identities=15% Similarity=0.110 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCc
Q 035988 142 SLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEA 221 (692)
Q Consensus 142 ~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEa 221 (692)
.+..-..+.+.+.|..+.+................+... .++-+|..|..........+.+.. ..+.+|++|..
T Consensus 25 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiI~~~~~~~~~~~~~~~~~~----~~iPvV~~~~~ 98 (293)
T 3l6u_A 25 RLINAFKAEAKANKYEALVATSQNSRISEREQILEFVHL--KVDAIFITTLDDVYIGSAIEEAKK----AGIPVFAIDRM 98 (293)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHT--TCSEEEEECSCTTTTHHHHHHHHH----TTCCEEEESSC
T ss_pred HHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHc--CCCEEEEecCChHHHHHHHHHHHH----cCCCEEEecCC
Confidence 345555666777898888887776666555555555554 566555544322211122333332 36778888753
Q ss_pred cc----ccccCCCchHH-HHHHHHHHhhC-CCC-----CEEEEecccchhhH-H---HHHHHhcccceEEEeccCCCCcc
Q 035988 222 HC----CSQWGHDFRPD-YKNLGILKTQF-PDV-----PMMALTATATQKVQ-N---DLMEMLHIRKCIKFVSTINRPNL 286 (692)
Q Consensus 222 H~----l~~~g~~fr~~-~~~l~~l~~~~-~~~-----~~i~lSAT~~~~~~-~---~i~~~l~~~~~~~~~~~~~r~~l 286 (692)
.. +...+.+.... +.....+.... ... .+.+++........ . -+.+.+.-. |.+
T Consensus 99 ~~~~~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~~~~~~i~~i~g~~~~~~~~~R~~gf~~~l~~~-----------~g~ 167 (293)
T 3l6u_A 99 IRSDAVVSSITSNNQMIGEQLASYIKNELIKQTGRSTGRIVEITGTANVYTTNERHRGFLKGIENE-----------PTL 167 (293)
T ss_dssp CCCTTCSEEEEECHHHHHHHHHHHHHHHHHHHHSCSCEEEEEEECSTTCHHHHHHHHHHHHHHTTC-----------TTE
T ss_pred CCCCcceeEEecCHHHHHHHHHHHHHHHhccCCCCCCceEEEEECCCCCchHHHHHHHHHHHHHhC-----------CCc
Confidence 22 11112222222 22222233322 222 67777755432211 1 112222211 122
Q ss_pred eEEE-eeccCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCC
Q 035988 287 FYMV-REKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGI 340 (692)
Q Consensus 287 ~~~v-~~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~ 340 (692)
.+.. .............+.+++.. ...+..|||.+...+..+.+.|++.|+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~ai~~~~d~~a~g~~~al~~~g~ 219 (293)
T 3l6u_A 168 SIVDSVSGNYDPVTSERVMRQVIDS---GIPFDAVYCHNDDIAMGVLEALKKAKI 219 (293)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHHT---TCCCSEEEESSHHHHHHHHHHHHHTTC
T ss_pred EEeeeccCCCCHHHHHHHHHHHHHh---CCCCCEEEECCchHHHHHHHHHHhCCC
Confidence 2211 11112223444556666654 345778999999999999999999887
No 446
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=46.00 E-value=8.9 Score=34.26 Aligned_cols=16 Identities=38% Similarity=0.345 Sum_probs=13.3
Q ss_pred CEEEEecCCChhHHHH
Q 035988 108 DVLVIMAAGGGKSLCY 123 (692)
Q Consensus 108 dviv~apTGsGKTl~~ 123 (692)
-.++.+|+|+|||...
T Consensus 25 ~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3689999999999753
No 447
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=45.92 E-value=11 Score=33.12 Aligned_cols=38 Identities=24% Similarity=0.399 Sum_probs=33.0
Q ss_pred CCCCceEEEEeccchHHHHHHHHHHCCCc-eeEeccCCC
Q 035988 313 PNSESGIVYCFSRKECEQVAQELRQRGIS-ADYYHADMD 350 (692)
Q Consensus 313 ~~~~~~IIf~~s~~~~e~l~~~L~~~g~~-v~~~h~~~~ 350 (692)
.++.+++|||.+-..+...+..|...|+. +..|.||+.
T Consensus 89 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 89 DSAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CCCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 36788999999988899999999999995 888999864
No 448
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=45.81 E-value=9.5 Score=33.35 Aligned_cols=37 Identities=11% Similarity=0.240 Sum_probs=33.0
Q ss_pred CCCceEEEEeccchHHHHHHHHHHCCCc-eeEeccCCC
Q 035988 314 NSESGIVYCFSRKECEQVAQELRQRGIS-ADYYHADMD 350 (692)
Q Consensus 314 ~~~~~IIf~~s~~~~e~l~~~L~~~g~~-v~~~h~~~~ 350 (692)
.+.+++|||.+-..+...+..|+..|+. +..+.||+.
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFG 122 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHH
Confidence 6789999999988899999999999996 899999963
No 449
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=45.63 E-value=11 Score=38.71 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=16.0
Q ss_pred CCEEEEecCCChhHHHHHH
Q 035988 107 RDVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~l 125 (692)
..+++.+|+|+|||....+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ 70 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHI 70 (334)
T ss_dssp CCEEEESSTTSSHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHH
Confidence 5799999999999986543
No 450
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=45.57 E-value=29 Score=39.61 Aligned_cols=58 Identities=17% Similarity=0.131 Sum_probs=42.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChh
Q 035988 131 EGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPE 192 (692)
Q Consensus 131 ~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe 192 (692)
+..+||.+.++.-++...+.|.+.|+++.++++.....+...+... .. ...|+|+|.-
T Consensus 474 gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~a--g~--~g~VtVATdm 531 (822)
T 3jux_A 474 GQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKA--GQ--KGMVTIATNM 531 (822)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHH--HS--TTCEEEEETT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhC--CC--CCeEEEEcch
Confidence 4579999999999999999999999999999997433322222221 11 3479999964
No 451
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=45.52 E-value=9.9 Score=35.94 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=14.1
Q ss_pred CEEEEecCCChhHHHHH
Q 035988 108 DVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 108 dviv~apTGsGKTl~~~ 124 (692)
-.++.|+.|||||....
T Consensus 7 i~l~tG~pGsGKT~~a~ 23 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMV 23 (199)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 46899999999998653
No 452
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=45.03 E-value=12 Score=42.52 Aligned_cols=75 Identities=16% Similarity=0.223 Sum_probs=41.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHcC----CCEEEEec--------CCChhHHHHHHHHHHh-cCCCccEEEeChhhhhch
Q 035988 131 EGIALVVSPLLSLIQDQVMCLAALG----IPAHMLTS--------TTSKEDEKFIYKALEK-GEGELKMLYVTPEKISKS 197 (692)
Q Consensus 131 ~~~~lvi~Pt~~L~~q~~~~l~~~g----i~~~~~~~--------~~~~~~~~~~~~~l~~-~~~~~~Ili~Tpe~l~~~ 197 (692)
++++||.++++.-+....+.|+..| +++..++| +.+..++..+...+.. + ..+|+|+|-- +.
T Consensus 398 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g--~~~vLVaT~v-~~-- 472 (696)
T 2ykg_A 398 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASG--DHNILIATSV-AD-- 472 (696)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-------------------------------CCSCSEEEES-SC--
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcC--CccEEEEech-hh--
Confidence 5789999999999999999999987 88888854 7777777778887776 6 7899999832 22
Q ss_pred HHHHHHHHhhhhcCCceEEEE
Q 035988 198 KRFMSKLEKCHHAGRLSLISI 218 (692)
Q Consensus 198 ~~~~~~l~~~~~~~~l~~iVI 218 (692)
...++..+++||.
T Consensus 473 --------~GiDip~v~~VI~ 485 (696)
T 2ykg_A 473 --------EGIDIAQCNLVIL 485 (696)
T ss_dssp --------CC---CCCSEEEE
T ss_pred --------cCCcCccCCEEEE
Confidence 2234456777775
No 453
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=45.00 E-value=25 Score=35.94 Aligned_cols=15 Identities=20% Similarity=0.096 Sum_probs=12.9
Q ss_pred EEEEecCCChhHHHH
Q 035988 109 VLVIMAAGGGKSLCY 123 (692)
Q Consensus 109 viv~apTGsGKTl~~ 123 (692)
+-+.||+|||||...
T Consensus 95 igI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999754
No 454
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=44.95 E-value=39 Score=37.40 Aligned_cols=80 Identities=11% Similarity=0.014 Sum_probs=56.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHcCCC--------EEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHH
Q 035988 131 EGIALVVSPLLSLIQDQVMCLAALGIP--------AHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMS 202 (692)
Q Consensus 131 ~~~~lvi~Pt~~L~~q~~~~l~~~gi~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~ 202 (692)
.+++||.++++.-+....+.|.+.+.. +..++|... ..+......+..+.....++++|...+.
T Consensus 439 ~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~------- 510 (590)
T 3h1t_A 439 FAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG-KIGKGHLSRFQELETSTPVILTTSQLLT------- 510 (590)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTT-------
T ss_pred CccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhh-------
Confidence 479999999999999999999876432 556666543 3467777888876444556666666553
Q ss_pred HHHhhhhcCCceEEEEeCc
Q 035988 203 KLEKCHHAGRLSLISIDEA 221 (692)
Q Consensus 203 ~l~~~~~~~~l~~iVIDEa 221 (692)
...++..+++||++..
T Consensus 511 ---~GiDip~v~~Vi~~~~ 526 (590)
T 3h1t_A 511 ---TGVDAPTCKNVVLARV 526 (590)
T ss_dssp ---TTCCCTTEEEEEEESC
T ss_pred ---cCccchheeEEEEEec
Confidence 2335567888888655
No 455
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=44.87 E-value=18 Score=44.60 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=16.2
Q ss_pred cCCCEEEEecCCChhHHHHH
Q 035988 105 SGRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~~ 124 (692)
.|+.+-+++|||+|||....
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~ 1123 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVA 1123 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHH
T ss_pred CCCEEEEECCCCChHHHHHH
Confidence 36778999999999997443
No 456
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=44.54 E-value=12 Score=49.23 Aligned_cols=45 Identities=13% Similarity=0.213 Sum_probs=29.1
Q ss_pred HHHHHHHhcCCCCCCHHHH----HHHHHHHcCCCEEEEecCCChhHHHHHH
Q 035988 79 ADDVRLNVFGIPAYRANQQ----EIINAVLSGRDVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 79 ~~~~l~~~fg~~~~r~~Q~----~ai~~il~g~dviv~apTGsGKTl~~~l 125 (692)
+.+...+ .|+ .+.+.+. +....+.....++++||||+|||.++..
T Consensus 894 i~~~~~~-~~l-~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 894 LKDAGQR-SGF-SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHH-HTC-CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHH-cCC-cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 3444443 366 3555542 2334445577899999999999998764
No 457
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=44.49 E-value=6.8 Score=37.66 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=11.7
Q ss_pred cCCCEEEEecCCChhHHHH
Q 035988 105 SGRDVLVIMAAGGGKSLCY 123 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~ 123 (692)
.|+-+.+.+|+|+|||...
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CCCEEEEECSCC----CHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667889999999999754
No 458
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=44.39 E-value=17 Score=40.69 Aligned_cols=27 Identities=41% Similarity=0.401 Sum_probs=21.0
Q ss_pred HHHHHHcCCCEEEEecCCChhHHHHHH
Q 035988 99 IINAVLSGRDVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 99 ai~~il~g~dviv~apTGsGKTl~~~l 125 (692)
+-..+..|..+++.+|+|+|||..+..
T Consensus 53 l~~~i~~g~~vll~Gp~GtGKTtlar~ 79 (604)
T 3k1j_A 53 IKTAANQKRHVLLIGEPGTGKSMLGQA 79 (604)
T ss_dssp HHHHHHTTCCEEEECCTTSSHHHHHHH
T ss_pred ccccccCCCEEEEEeCCCCCHHHHHHH
Confidence 334455789999999999999986643
No 459
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=44.30 E-value=8.2 Score=35.52 Aligned_cols=19 Identities=26% Similarity=0.267 Sum_probs=15.3
Q ss_pred CCCEEEEecCCChhHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~ 124 (692)
+.-+++.+++|||||....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3457899999999998654
No 460
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=44.07 E-value=8.7 Score=35.20 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=16.4
Q ss_pred cCCCEEEEecCCChhHHHHHH
Q 035988 105 SGRDVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~~l 125 (692)
.|..+++.++.|||||.....
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~ 23 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASR 23 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 345688999999999986543
No 461
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=43.74 E-value=9.2 Score=39.88 Aligned_cols=16 Identities=31% Similarity=0.331 Sum_probs=13.6
Q ss_pred CEEEEecCCChhHHHH
Q 035988 108 DVLVIMAAGGGKSLCY 123 (692)
Q Consensus 108 dviv~apTGsGKTl~~ 123 (692)
-.++.+|||+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4679999999999754
No 462
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=43.35 E-value=1e+02 Score=30.13 Aligned_cols=89 Identities=13% Similarity=0.043 Sum_probs=56.3
Q ss_pred HHcCCCEEEEecCC-ChhHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhH-HHHHHHHHHhc
Q 035988 103 VLSGRDVLVIMAAG-GGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKED-EKFIYKALEKG 180 (692)
Q Consensus 103 il~g~dviv~apTG-sGKTl~~~lpal~~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~-~~~~~~~l~~~ 180 (692)
.+.++.++|.+.+| -|+.++-.+ ...+..++++.-..+-..+..+.+...+..+..+..+....+ .......+...
T Consensus 21 m~~~k~~lVTGas~GIG~aia~~l--a~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 98 (279)
T 3sju_A 21 MSRPQTAFVTGVSSGIGLAVARTL--AARGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVER 98 (279)
T ss_dssp ----CEEEEESTTSHHHHHHHHHH--HHTTCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHH--HHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 46788888888765 588877655 234566666666667777778888888888888877766543 33334444333
Q ss_pred CCCccEEEeChhh
Q 035988 181 EGELKMLYVTPEK 193 (692)
Q Consensus 181 ~~~~~Ili~Tpe~ 193 (692)
.+..+++|-+.+.
T Consensus 99 ~g~id~lv~nAg~ 111 (279)
T 3sju_A 99 FGPIGILVNSAGR 111 (279)
T ss_dssp HCSCCEEEECCCC
T ss_pred cCCCcEEEECCCC
Confidence 3467888877663
No 463
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=43.35 E-value=15 Score=33.49 Aligned_cols=17 Identities=29% Similarity=0.216 Sum_probs=14.0
Q ss_pred CEEEEecCCChhHHHHH
Q 035988 108 DVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 108 dviv~apTGsGKTl~~~ 124 (692)
-.++++|+|+|||...-
T Consensus 28 ~~~i~G~NGsGKStll~ 44 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGD 44 (182)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred cEEEECCCCCCHHHHHH
Confidence 46899999999997543
No 464
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=43.33 E-value=9.9 Score=35.52 Aligned_cols=18 Identities=28% Similarity=0.420 Sum_probs=15.2
Q ss_pred CCEEEEecCCChhHHHHH
Q 035988 107 RDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~ 124 (692)
+-+++.|+.|||||....
T Consensus 19 ~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SCEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999998653
No 465
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=43.23 E-value=94 Score=30.81 Aligned_cols=88 Identities=15% Similarity=0.133 Sum_probs=58.1
Q ss_pred HcCCCEEEEecCC-ChhHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhH-HHHHHHHHHhcC
Q 035988 104 LSGRDVLVIMAAG-GGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKED-EKFIYKALEKGE 181 (692)
Q Consensus 104 l~g~dviv~apTG-sGKTl~~~lpal~~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~-~~~~~~~l~~~~ 181 (692)
+.++.++|.+.+| -|+.++-.+ +..+..++++.-..+-..+..+.+...+..+..+..+....+ .......+....
T Consensus 29 l~gk~vlVTGas~gIG~~la~~l--~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 106 (301)
T 3tjr_A 29 FDGRAAVVTGGASGIGLATATEF--ARRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLL 106 (301)
T ss_dssp STTCEEEEETTTSHHHHHHHHHH--HHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHH--HHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhC
Confidence 3577888888776 588887655 334566666666666677777788888888888877766543 333334433333
Q ss_pred CCccEEEeChhh
Q 035988 182 GELKMLYVTPEK 193 (692)
Q Consensus 182 ~~~~Ili~Tpe~ 193 (692)
+.++++|-+.+.
T Consensus 107 g~id~lvnnAg~ 118 (301)
T 3tjr_A 107 GGVDVVFSNAGI 118 (301)
T ss_dssp SSCSEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 467888877664
No 466
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=43.00 E-value=11 Score=34.76 Aligned_cols=19 Identities=21% Similarity=0.128 Sum_probs=15.2
Q ss_pred CCCEEEEecCCChhHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~ 124 (692)
+.-+++.++.|||||...-
T Consensus 5 ~~~I~l~G~~GsGKST~~~ 23 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQ 23 (193)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3457899999999998653
No 467
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=42.40 E-value=10 Score=42.45 Aligned_cols=17 Identities=35% Similarity=0.446 Sum_probs=15.2
Q ss_pred CEEEEecCCChhHHHHH
Q 035988 108 DVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 108 dviv~apTGsGKTl~~~ 124 (692)
++++.+|+|+|||..+.
T Consensus 329 ~vLL~GppGtGKT~LAr 345 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQ 345 (595)
T ss_dssp CEEEEESSCCTHHHHHH
T ss_pred ceEEECCCchHHHHHHH
Confidence 89999999999998554
No 468
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=42.04 E-value=11 Score=34.63 Aligned_cols=20 Identities=20% Similarity=0.320 Sum_probs=16.4
Q ss_pred cCCCEEEEecCCChhHHHHH
Q 035988 105 SGRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~~ 124 (692)
.+.-+++.++.|||||...-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCE 27 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45678999999999998654
No 469
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=41.92 E-value=12 Score=35.04 Aligned_cols=20 Identities=30% Similarity=0.248 Sum_probs=16.0
Q ss_pred cCCCEEEEecCCChhHHHHH
Q 035988 105 SGRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~~ 124 (692)
.|.-+.+.+|.|+|||...-
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~ 43 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLAC 43 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 35668899999999997653
No 470
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=41.51 E-value=83 Score=33.09 Aligned_cols=16 Identities=38% Similarity=0.457 Sum_probs=13.8
Q ss_pred EEEEecCCChhHHHHH
Q 035988 109 VLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 109 viv~apTGsGKTl~~~ 124 (692)
++++++.|||||..+.
T Consensus 261 Iil~G~pGSGKSTla~ 276 (416)
T 3zvl_A 261 VVAVGFPGAGKSTFIQ 276 (416)
T ss_dssp EEEESCTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 7899999999998654
No 471
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=41.39 E-value=1.8e+02 Score=27.95 Aligned_cols=87 Identities=10% Similarity=0.106 Sum_probs=58.8
Q ss_pred HcCCCEEEEecCC-ChhHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhH-HHHHHHHHHhcC
Q 035988 104 LSGRDVLVIMAAG-GGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKED-EKFIYKALEKGE 181 (692)
Q Consensus 104 l~g~dviv~apTG-sGKTl~~~lpal~~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~-~~~~~~~l~~~~ 181 (692)
+.++.++|.+.+| -|+.++-.+ ...+..++++.-..+-.++..+.+...+.++..+..+....+ .......+....
T Consensus 9 l~~k~vlVTGas~gIG~aia~~l--~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 86 (264)
T 3ucx_A 9 LTDKVVVISGVGPALGTTLARRC--AEQGADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAY 86 (264)
T ss_dssp TTTCEEEEESCCTTHHHHHHHHH--HHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred cCCcEEEEECCCcHHHHHHHHHH--HHCcCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 5678888888764 688887655 344667777777777777778888888888888887766543 333444444434
Q ss_pred CCccEEEeChh
Q 035988 182 GELKMLYVTPE 192 (692)
Q Consensus 182 ~~~~Ili~Tpe 192 (692)
+..|++|-+..
T Consensus 87 g~id~lv~nAg 97 (264)
T 3ucx_A 87 GRVDVVINNAF 97 (264)
T ss_dssp SCCSEEEECCC
T ss_pred CCCcEEEECCC
Confidence 46788887654
No 472
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=41.34 E-value=2.4e+02 Score=26.89 Aligned_cols=168 Identities=8% Similarity=0.023 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHcCCC-EEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEe
Q 035988 141 LSLIQDQVMCLAALGIP-AHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISID 219 (692)
Q Consensus 141 ~~L~~q~~~~l~~~gi~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVID 219 (692)
..+.....+.+.+.|.. +..................+... .++-+|..|+.+.. .....+.+|++|
T Consensus 26 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~~~~~-----------~~~~~iPvV~~~ 92 (277)
T 3hs3_A 26 AQIIDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENN--NVDGIITSAFTIPP-----------NFHLNTPLVMYD 92 (277)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHT--TCSEEEEECCCCCT-----------TCCCSSCEEEES
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhC--CCCEEEEcchHHHH-----------HHhCCCCEEEEc
Confidence 34555666777788998 77766666665555555656554 67766666632211 112367788888
Q ss_pred Cc-cc---ccccCCCchHHHHHHHHHHhhCCCCCEEEEecccchhhH-HHH---HHHhcccceEEEeccCCCCcceEEE-
Q 035988 220 EA-HC---CSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQ-NDL---MEMLHIRKCIKFVSTINRPNLFYMV- 290 (692)
Q Consensus 220 Ea-H~---l~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~-~~i---~~~l~~~~~~~~~~~~~r~~l~~~v- 290 (692)
-. -. + ..+.+............. .....+.+++........ ... .+.+.-.. +.+..
T Consensus 93 ~~~~~~~~~-~V~~D~~~~g~~a~~~L~-~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g------------~~~~~~ 158 (277)
T 3hs3_A 93 SANINDDIV-RIVSNNTKGGKESIKLLS-KKIEKVLIQHWPLSLPTIRERIEAMTAEASKLK------------IDYLLE 158 (277)
T ss_dssp CCCCCSSSE-EEEECHHHHHHHHHHTSC-TTCCEEEEEESCTTSHHHHHHHHHHHHHHHHTT------------CEEEEE
T ss_pred ccccCCCCE-EEEEChHHHHHHHHHHHH-hCCCEEEEEeCCCcCccHHHHHHHHHHHHHHCC------------CCCCCC
Confidence 65 11 1 122233333333222222 445566677665432211 111 11111111 00000
Q ss_pred eeccCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCc
Q 035988 291 REKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGIS 341 (692)
Q Consensus 291 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~ 341 (692)
...... . .+.+.+++.. ...+.-|||.+...+..+.+.|++.|+.
T Consensus 159 ~~~~~~--~-~~~~~~~l~~---~~~~~ai~~~~d~~A~g~~~al~~~g~~ 203 (277)
T 3hs3_A 159 ETPENN--P-YISAQSALNK---SNQFDAIITVNDLYAAEIIKEAKRRNLK 203 (277)
T ss_dssp ECCSSC--H-HHHHHHHHHT---GGGCSEEECSSHHHHHHHHHHHHHTTCC
T ss_pred CccCCc--h-HHHHHHHHcC---CCCCCEEEECCHHHHHHHHHHHHHcCCC
Confidence 000111 1 4455566653 2457789999988898999999988764
No 473
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=41.33 E-value=9.3 Score=36.06 Aligned_cols=18 Identities=33% Similarity=0.228 Sum_probs=14.3
Q ss_pred CCCEEEEecCCChhHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCY 123 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~ 123 (692)
|.-+.+.+|+|||||...
T Consensus 22 g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp CEEEEEECCTTSCTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 445789999999999644
No 474
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=41.14 E-value=11 Score=39.32 Aligned_cols=16 Identities=38% Similarity=0.472 Sum_probs=13.5
Q ss_pred CEEEEecCCChhHHHH
Q 035988 108 DVLVIMAAGGGKSLCY 123 (692)
Q Consensus 108 dviv~apTGsGKTl~~ 123 (692)
-.++.+|||+|||...
T Consensus 27 l~vi~G~NGaGKT~il 42 (371)
T 3auy_A 27 IVAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4689999999999753
No 475
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=41.08 E-value=15 Score=33.25 Aligned_cols=19 Identities=26% Similarity=0.382 Sum_probs=15.4
Q ss_pred CCEEEEecCCChhHHHHHH
Q 035988 107 RDVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~l 125 (692)
+.+++.+|.|||||.....
T Consensus 5 ~~i~i~G~~GsGKsTla~~ 23 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARA 23 (175)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHH
Confidence 3688999999999986543
No 476
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=41.07 E-value=20 Score=39.62 Aligned_cols=20 Identities=20% Similarity=0.144 Sum_probs=16.9
Q ss_pred CCCEEEEecCCChhHHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~l 125 (692)
+..+++.+|+|+|||.....
T Consensus 108 g~~vll~Gp~GtGKTtlar~ 127 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKS 127 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 66799999999999986543
No 477
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=40.95 E-value=16 Score=39.42 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=16.0
Q ss_pred CCCEEEEecCCChhHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~ 124 (692)
..++++.+|+|+|||....
T Consensus 201 ~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 4579999999999998654
No 478
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=40.89 E-value=11 Score=40.76 Aligned_cols=55 Identities=16% Similarity=0.259 Sum_probs=43.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeCh
Q 035988 131 EGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTP 191 (692)
Q Consensus 131 ~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tp 191 (692)
++.+||.+|++.-++...+.|+..|+++..+++... ..++..+..+ ..+|+|+|.
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~~R----~~~~~~f~~g--~~~iLVaT~ 244 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRKSY----DTEYPKCKNG--DWDFVITTD 244 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTTCC----CCCGGGSSSC--CCSEEEESS
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHHHH----HHHHhhccCC--CceEEEECC
Confidence 578999999999999999999999999999988532 2233333444 889999994
No 479
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=40.78 E-value=43 Score=33.00 Aligned_cols=48 Identities=17% Similarity=0.159 Sum_probs=38.1
Q ss_pred HHHHHHHH-hCCCCCceEEEEeccchHHHHHHHHHHCCCc-eeEeccCCC
Q 035988 303 EIAKYIQE-SYPNSESGIVYCFSRKECEQVAQELRQRGIS-ADYYHADMD 350 (692)
Q Consensus 303 ~l~~~l~~-~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~-v~~~h~~~~ 350 (692)
.+...+.. ...++++++|||.+-..+...+..|...|+. +..|.||+.
T Consensus 217 ~l~~~~~~~~~~~~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~ 266 (280)
T 1urh_A 217 ELDAIFFGRGVSYDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWS 266 (280)
T ss_dssp HHHHHHHTTTCCSSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCC
T ss_pred HHHHHHHHcCCCCCCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHH
Confidence 34444432 2346789999999999999999999999994 899999986
No 480
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=40.65 E-value=14 Score=33.84 Aligned_cols=18 Identities=22% Similarity=0.300 Sum_probs=15.0
Q ss_pred CCEEEEecCCChhHHHHH
Q 035988 107 RDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~ 124 (692)
..+++.+++|||||....
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGR 20 (184)
T ss_dssp CSEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 358899999999998654
No 481
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=40.60 E-value=11 Score=41.19 Aligned_cols=18 Identities=28% Similarity=0.302 Sum_probs=15.8
Q ss_pred CCCEEEEecCCChhHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCY 123 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~ 123 (692)
+.++++.++||||||.+.
T Consensus 167 ~pHlLIaG~TGSGKSt~L 184 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGV 184 (512)
T ss_dssp SCSEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 468999999999999764
No 482
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=40.53 E-value=96 Score=24.51 Aligned_cols=13 Identities=31% Similarity=0.355 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 035988 33 QLYERQSELKSLL 45 (692)
Q Consensus 33 ~~~~~~~~~~~~~ 45 (692)
.++++...+...+
T Consensus 59 qLk~E~~~wq~Rl 71 (81)
T 2jee_A 59 HLKEQQNGWQERL 71 (81)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 483
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=40.13 E-value=12 Score=34.17 Aligned_cols=16 Identities=31% Similarity=0.179 Sum_probs=13.5
Q ss_pred CEEEEecCCChhHHHH
Q 035988 108 DVLVIMAAGGGKSLCY 123 (692)
Q Consensus 108 dviv~apTGsGKTl~~ 123 (692)
-+++.++.|+|||...
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999754
No 484
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=40.01 E-value=13 Score=34.94 Aligned_cols=18 Identities=17% Similarity=0.344 Sum_probs=14.5
Q ss_pred CEEEEecCCChhHHHHHH
Q 035988 108 DVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 108 dviv~apTGsGKTl~~~l 125 (692)
.+++.+|.|||||.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQ 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378899999999986543
No 485
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=39.85 E-value=15 Score=34.88 Aligned_cols=19 Identities=16% Similarity=0.169 Sum_probs=15.2
Q ss_pred CCEEEEecCCChhHHHHHH
Q 035988 107 RDVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 107 ~dviv~apTGsGKTl~~~l 125 (692)
..+.+.+|+|||||...-+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~ 24 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKA 24 (227)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4578999999999986543
No 486
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=39.81 E-value=2.8e+02 Score=27.13 Aligned_cols=191 Identities=8% Similarity=-0.017 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHhcCCCccEEEeChhhhhchHHHHHHHHhhhhcCCceEEEEeCc
Q 035988 142 SLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEA 221 (692)
Q Consensus 142 ~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Ili~Tpe~l~~~~~~~~~l~~~~~~~~l~~iVIDEa 221 (692)
.+..-..+.+++.|..+.+..+.............+... .++-+|..|-.-.........+.. ..+.+|++|-.
T Consensus 20 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~--~vdgiIi~~~~~~~~~~~~~~~~~----~giPvV~~~~~ 93 (330)
T 3uug_A 20 DDGNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVTK--GVKVLVIASIDGTTLSDVLKQAGE----QGIKVIAYDRL 93 (330)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHH--TCSEEEECCSSGGGGHHHHHHHHH----TTCEEEEESSC
T ss_pred HHHHHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHHc--CCCEEEEEcCCchhHHHHHHHHHH----CCCCEEEECCC
Confidence 455566677788899988888776666555555555544 677777766432111223333332 36788888853
Q ss_pred cc----c-cccCCCch-HHHHHHHHHHhh------CCCCCEEEEecccchhhH-HH---HHHHhccc---ceEEEeccCC
Q 035988 222 HC----C-SQWGHDFR-PDYKNLGILKTQ------FPDVPMMALTATATQKVQ-ND---LMEMLHIR---KCIKFVSTIN 282 (692)
Q Consensus 222 H~----l-~~~g~~fr-~~~~~l~~l~~~------~~~~~~i~lSAT~~~~~~-~~---i~~~l~~~---~~~~~~~~~~ 282 (692)
.. . ...+.+.. ..+.....+... .....+.+++........ .. +.+.+.-. ..+.+....
T Consensus 94 ~~~~~~~~~~V~~D~~~~g~~a~~~l~~~~~~~~~~G~~~i~~i~g~~~~~~~~~R~~Gf~~al~~~~~~~~~~~~~~~- 172 (330)
T 3uug_A 94 IRNSGDVSYYATFDNFQVGVLQATSITDKLGLKDGKGPFNIELFGGSPDDNNAFFFYDGAMSVLKPYIDSGKLVVKSGQ- 172 (330)
T ss_dssp CCSCTTCCEEEEECHHHHHHHHHHHHHHHHTGGGTCCCEEEEECBCCTTCHHHHHHHHHHHHHHHHHHHHTSEECTTCC-
T ss_pred CCCCCceeEEEEeCHHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCCchHHHHHHHHHHHHHhccccCceEEeecc-
Confidence 21 1 01111222 222222233332 233456677665432211 11 11111110 011111100
Q ss_pred CCcceEEEeeccCcchHHHHHHHHHHHHhCCCCCceEEEEeccchHHHHHHHHHHCCCc
Q 035988 283 RPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGIS 341 (692)
Q Consensus 283 r~~l~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~ 341 (692)
.... .+.............+.+++..+.....+.-|||.+-..+..+.+.|++.|+.
T Consensus 173 -~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~~~nd~~A~g~~~al~~~g~~ 229 (330)
T 3uug_A 173 -MGMD-KVGTLRWDPATAQARMDNLLSAYYTDAKVDAVLSPYDGLSIGIISSLKGVGYG 229 (330)
T ss_dssp -CSHH-HHBCGGGCHHHHHHHHHHHHHHHCSSSCCCEEECSSHHHHHHHHHHHHHTTCS
T ss_pred -cccc-cccCCCCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCchHHHHHHHHHHcCCC
Confidence 0000 00001111233455666667643124567889999999999999999999875
No 487
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=39.55 E-value=1.2e+02 Score=28.77 Aligned_cols=88 Identities=14% Similarity=0.060 Sum_probs=56.2
Q ss_pred HcCCCEEEEecCC-ChhHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhH-HHHHHHHHHhcC
Q 035988 104 LSGRDVLVIMAAG-GGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKED-EKFIYKALEKGE 181 (692)
Q Consensus 104 l~g~dviv~apTG-sGKTl~~~lpal~~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~-~~~~~~~l~~~~ 181 (692)
+.++.++|.+.+| -|+.++-.+ +..+..++++.-..+-..+..+.+...+.++..+..+....+ .......+....
T Consensus 7 ~~~k~vlITGas~giG~~~a~~l--~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T 3qiv_A 7 FENKVGIVTGSGGGIGQAYAEAL--AREGAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAEF 84 (253)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHH--HHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHH--HHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 3577788887765 488887655 334566667777777777777788877777777777765432 233333333323
Q ss_pred CCccEEEeChhh
Q 035988 182 GELKMLYVTPEK 193 (692)
Q Consensus 182 ~~~~Ili~Tpe~ 193 (692)
+.++++|-+...
T Consensus 85 g~id~li~~Ag~ 96 (253)
T 3qiv_A 85 GGIDYLVNNAAI 96 (253)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 367777776653
No 488
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=39.50 E-value=13 Score=34.02 Aligned_cols=17 Identities=29% Similarity=0.370 Sum_probs=14.4
Q ss_pred CEEEEecCCChhHHHHH
Q 035988 108 DVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 108 dviv~apTGsGKTl~~~ 124 (692)
-+++.+++|||||....
T Consensus 8 ~I~l~G~~GsGKsT~~~ 24 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCA 24 (194)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998654
No 489
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=39.47 E-value=13 Score=35.57 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=15.7
Q ss_pred CCCEEEEecCCChhHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~ 124 (692)
+.-+++.+++|||||....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~ 25 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSS 25 (227)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568999999999998654
No 490
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=39.25 E-value=19 Score=36.61 Aligned_cols=32 Identities=16% Similarity=0.023 Sum_probs=19.9
Q ss_pred EEEEecCCChhHHHHHH-HHHhcCCeEEEEccc
Q 035988 109 VLVIMAAGGGKSLCYQL-PAVLREGIALVVSPL 140 (692)
Q Consensus 109 viv~apTGsGKTl~~~l-pal~~~~~~lvi~Pt 140 (692)
+++.++.|+|||...-. -....+.++.||.|.
T Consensus 7 ~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d 39 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE 39 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS
T ss_pred EEEEecCCCCHHHHHHHHHhhcCCCcEEEEEec
Confidence 68999999999975432 222234455555553
No 491
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=39.17 E-value=1.2e+02 Score=24.58 Aligned_cols=57 Identities=12% Similarity=0.118 Sum_probs=40.4
Q ss_pred CCCceEEEE------eccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEEE
Q 035988 314 NSESGIVYC------FSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIV 370 (692)
Q Consensus 314 ~~~~~IIf~------~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~ILV 370 (692)
...+++||. +....|..+...|.+.++....+.-..++..+....+.+....+..++
T Consensus 15 ~~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v~ 77 (105)
T 2yan_A 15 NKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQLY 77 (105)
T ss_dssp TSSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE
T ss_pred ccCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCCCCCCeEE
Confidence 345788887 456789999999999998877777766776666666655444444443
No 492
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=39.05 E-value=21 Score=33.55 Aligned_cols=18 Identities=17% Similarity=0.276 Sum_probs=14.6
Q ss_pred CEEEEecCCChhHHHHHH
Q 035988 108 DVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 108 dviv~apTGsGKTl~~~l 125 (692)
.+++.+|.|||||.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGER 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378899999999986543
No 493
>1go3_F DNA-directed RNA polymerase subunit F; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: a.60.8.2
Probab=39.03 E-value=18 Score=30.48 Aligned_cols=44 Identities=20% Similarity=0.262 Sum_probs=33.5
Q ss_pred ccHHHHHHHHHcCCCChhhcchhhhhhcccchhhhhhhHHHHHHHHhhh
Q 035988 601 LSSQLIRLISARKPSTMEEASSNHLEKIIGKLKTGKYGSRILEVISKCG 649 (692)
Q Consensus 601 ~~~~~l~~~~~~~p~~~~~~~~~~l~~i~g~~k~~~~g~~~l~~~~~~~ 649 (692)
++..+...||...|.|.+| +..|+...+.+.=-++||++|.+|+
T Consensus 64 l~e~~a~~I~nl~P~t~dE-----lraii~~~~~~eel~~ILd~l~k~~ 107 (107)
T 1go3_F 64 IDEKTAVKIADILPEDLDD-----LRAIYYKRELPENAEEILEIVRKYI 107 (107)
T ss_dssp CCHHHHHHHHHHCCCSHHH-----HHHHSTTSCCCTTHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHhCCCCHHH-----HHHHHhcccCcHHHHHHHHHHHHcC
Confidence 4677899999999999999 9999555443444467788777663
No 494
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=39.03 E-value=1e+02 Score=29.72 Aligned_cols=88 Identities=16% Similarity=0.088 Sum_probs=56.7
Q ss_pred HcCCCEEEEecCC-ChhHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHcCCCEEEEecCCChhH-HHHHHHHHHhcC
Q 035988 104 LSGRDVLVIMAAG-GGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKED-EKFIYKALEKGE 181 (692)
Q Consensus 104 l~g~dviv~apTG-sGKTl~~~lpal~~~~~~lvi~Pt~~L~~q~~~~l~~~gi~~~~~~~~~~~~~-~~~~~~~l~~~~ 181 (692)
+.++.++|.+.+| -|+.++-.+ +..+..++++.-..+-..+....+...+..+..+..+....+ .......+....
T Consensus 27 l~~k~vlITGas~gIG~~la~~l--~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 104 (262)
T 3rkr_A 27 LSGQVAVVTGASRGIGAAIARKL--GSLGARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAH 104 (262)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHH--HHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHH--HHCCCEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHhc
Confidence 4577788877665 588887655 344566666666666677777888888877777777765443 333334333333
Q ss_pred CCccEEEeChhh
Q 035988 182 GELKMLYVTPEK 193 (692)
Q Consensus 182 ~~~~Ili~Tpe~ 193 (692)
+.++++|-+.+.
T Consensus 105 g~id~lv~~Ag~ 116 (262)
T 3rkr_A 105 GRCDVLVNNAGV 116 (262)
T ss_dssp SCCSEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 367888776653
No 495
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=38.99 E-value=13 Score=34.26 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=16.2
Q ss_pred cCCCEEEEecCCChhHHHHH
Q 035988 105 SGRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~~ 124 (692)
.+.-+++.+++|||||...-
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~ 30 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCE 30 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 35668999999999997653
No 496
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=38.88 E-value=13 Score=34.87 Aligned_cols=19 Identities=16% Similarity=0.016 Sum_probs=14.8
Q ss_pred CCCEEEEecCCChhHHHHH
Q 035988 106 GRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 106 g~dviv~apTGsGKTl~~~ 124 (692)
+.-+.+.+|+|||||...-
T Consensus 6 ~~~i~i~G~~GsGKSTl~~ 24 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQ 24 (211)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHH
Confidence 4457799999999997553
No 497
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=38.81 E-value=18 Score=47.54 Aligned_cols=20 Identities=25% Similarity=0.441 Sum_probs=17.6
Q ss_pred HcCCCEEEEecCCChhHHHH
Q 035988 104 LSGRDVLVIMAAGGGKSLCY 123 (692)
Q Consensus 104 l~g~dviv~apTGsGKTl~~ 123 (692)
..++.++++||||+|||+..
T Consensus 1265 ~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1265 NSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHTCEEEEECSTTSSHHHHH
T ss_pred HCCCeEEEECCCCCCHHHHH
Confidence 35789999999999999865
No 498
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=38.76 E-value=15 Score=48.88 Aligned_cols=38 Identities=18% Similarity=0.341 Sum_probs=25.3
Q ss_pred cCCCCCCHHHHH-H---HHHHHcCCCEEEEecCCChhHHHHHH
Q 035988 87 FGIPAYRANQQE-I---INAVLSGRDVLVIMAAGGGKSLCYQL 125 (692)
Q Consensus 87 fg~~~~r~~Q~~-a---i~~il~g~dviv~apTGsGKTl~~~l 125 (692)
.|+ .+.|.+.. + .+.+.....++++||||||||.|+-.
T Consensus 884 ~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~ 925 (3245)
T 3vkg_A 884 RHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEV 925 (3245)
T ss_dssp TTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHH
T ss_pred cCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHH
Confidence 466 45554432 2 33333456689999999999999863
No 499
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=38.58 E-value=95 Score=25.81 Aligned_cols=56 Identities=11% Similarity=0.080 Sum_probs=39.4
Q ss_pred CCCceEEEE------eccchHHHHHHHHHHCCCceeEeccCCCHHHHHHHHHHHhcCCCcEE
Q 035988 314 NSESGIVYC------FSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVI 369 (692)
Q Consensus 314 ~~~~~IIf~------~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~eR~~~~~~f~~g~~~IL 369 (692)
...+++||. ++...|..+...|.+.|+....+.=..+++.+....+......+..+
T Consensus 14 ~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g~~tvP~i 75 (111)
T 3zyw_A 14 HAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSSWPTYPQL 75 (111)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEE
T ss_pred hcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHCCCCCCEE
Confidence 567899998 46778999999999999987777655566666655543333334444
No 500
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=38.43 E-value=71 Score=39.30 Aligned_cols=20 Identities=30% Similarity=0.479 Sum_probs=16.7
Q ss_pred cCCCEEEEecCCChhHHHHH
Q 035988 105 SGRDVLVIMAAGGGKSLCYQ 124 (692)
Q Consensus 105 ~g~dviv~apTGsGKTl~~~ 124 (692)
.|+-+.+++|+|||||....
T Consensus 443 ~G~~vaivG~sGsGKSTll~ 462 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIIS 462 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHH
T ss_pred CCcEEEEEecCCCcHHHHHH
Confidence 47789999999999998543
Done!