BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035991
(140 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DKV|A Chain A, Crystal Structure Of Class I Chitinase From Oryza Sativa
L. Japonica
pdb|3IWR|A Chain A, Crystal Structure Of Class I Chitinase From Oryza Sativa
L. Japonica
pdb|3IWR|B Chain B, Crystal Structure Of Class I Chitinase From Oryza Sativa
L. Japonica
Length = 309
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 63/109 (57%), Gaps = 15/109 (13%)
Query: 24 EQCGKQAGGALCPNDDCCSKDGFCGITATYCGEGCQRQCH---------------HLSSF 68
EQCG QAGGA CPN CCS+ G+CG T+ +CG+GCQ QC + S
Sbjct: 2 EQCGAQAGGARCPNCLCCSRWGWCGTTSDFCGDGCQSQCSGCGPTPTPTPPSPSDGVGSI 61
Query: 69 LDQSTFDEVFPNQNSSNCPSQGFYTYDALINAAKSFSGFASVGDDGTRK 117
+ + F+ + ++N CP++GFYTY+A + AA +F F G+ TRK
Sbjct: 62 VPRDLFERLLLHRNDGACPARGFYTYEAFLAAAAAFPAFGGTGNTETRK 110
>pdb|1DXJ|A Chain A, Structure Of The Chitinase From Jack Bean
Length = 242
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 35/53 (66%)
Query: 65 LSSFLDQSTFDEVFPNQNSSNCPSQGFYTYDALINAAKSFSGFASVGDDGTRK 117
+ S +D S FD++ ++N C +GFY+Y+A + AA+SF GF + GD TRK
Sbjct: 2 VGSVIDASLFDQLLKHRNDPACEGKGFYSYNAFVTAARSFGGFGTTGDTNTRK 54
>pdb|3CQL|A Chain A, Crystal Structure Of Gh Family 19 Chitinase From Carica
Papaya
pdb|3CQL|B Chain B, Crystal Structure Of Gh Family 19 Chitinase From Carica
Papaya
Length = 243
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 34/53 (64%)
Query: 65 LSSFLDQSTFDEVFPNQNSSNCPSQGFYTYDALINAAKSFSGFASVGDDGTRK 117
+ + +S FD++ ++N+ CP++GFYTYDA I AAKSF F + G RK
Sbjct: 2 IEKIISRSMFDQMLKHRNNPACPAKGFYTYDAFIAAAKSFPSFGTTGSTDVRK 54
>pdb|3W3E|A Chain A, Structure Of Vigna Unguiculata Chitinase With Regulation
Activity Of The Plant Cell Wall
pdb|3W3E|B Chain B, Structure Of Vigna Unguiculata Chitinase With Regulation
Activity Of The Plant Cell Wall
Length = 242
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%)
Query: 64 HLSSFLDQSTFDEVFPNQNSSNCPSQGFYTYDALINAAKSFSGFASVGDDGTRK 117
+ S + S FD++ ++N C +GFY+Y+A I AA+SF+ F + GD TRK
Sbjct: 2 EVGSVIGASLFDQLLKHRNDQACEGKGFYSYNAFITAARSFAAFGTTGDSNTRK 55
>pdb|1ULN|A Chain A, Crystal Structure Of Pokeweed Lectin-D1
Length = 84
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 30/46 (65%)
Query: 25 QCGKQAGGALCPNDDCCSKDGFCGITATYCGEGCQRQCHHLSSFLD 70
+CG++A G CPN CCS+ G+CG T YCG+GCQ QC + D
Sbjct: 3 ECGERASGKRCPNGKCCSQWGYCGTTDNYCGQGCQSQCDYWRCGRD 48
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 26/38 (68%)
Query: 25 QCGKQAGGALCPNDDCCSKDGFCGITATYCGEGCQRQC 62
+CG+ GG LC D CCSK G+CG + +C +GCQ QC
Sbjct: 44 RCGRDFGGRLCEEDMCCSKYGWCGYSDDHCEDGCQSQC 81
>pdb|1ULM|A Chain A, Crystal Structure Of Pokeweed Lectin-D2 Complexed With
Tri-N- Acetylchitotriose
pdb|1ULM|B Chain B, Crystal Structure Of Pokeweed Lectin-D2 Complexed With
Tri-N- Acetylchitotriose
pdb|1UHA|A Chain A, Crystal Structure Of Pokeweed Lectin-D2
Length = 82
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 30/46 (65%)
Query: 25 QCGKQAGGALCPNDDCCSKDGFCGITATYCGEGCQRQCHHLSSFLD 70
+CG++A G CPN CCS+ G+CG T YCG+GCQ QC + D
Sbjct: 3 ECGERASGKRCPNGKCCSQWGYCGTTDNYCGQGCQSQCDYWRCGRD 48
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 26/38 (68%)
Query: 25 QCGKQAGGALCPNDDCCSKDGFCGITATYCGEGCQRQC 62
+CG+ GG LC D CCSK G+CG + +C +GCQ QC
Sbjct: 44 RCGRDFGGRLCEEDMCCSKYGWCGYSDDHCEDGCQSQC 81
>pdb|1WGT|A Chain A, X-Ray Structure Of Wheat Germ Agglutinin Isolectin 3
pdb|1WGT|B Chain B, X-Ray Structure Of Wheat Germ Agglutinin Isolectin 3
pdb|1K7T|A Chain A, Crystal Structure Analysis Of
Crosslinked-Wga3GLCNACBETA1,6GAL Complex
pdb|1K7T|B Chain B, Crystal Structure Analysis Of
Crosslinked-Wga3GLCNACBETA1,6GAL Complex
pdb|1K7U|A Chain A, Crystal Structure Analysis Of
Crosslinked-Wga3GLCNACBETA1,4GLCNAC Complex
pdb|1K7U|B Chain B, Crystal Structure Analysis Of
Crosslinked-Wga3GLCNACBETA1,4GLCNAC Complex
pdb|1K7V|A Chain A, Crystal Structure Analysis Of
Crosslinked-Wga3GLCNACBETA1,6GALBETA1, 4glc
pdb|1K7V|B Chain B, Crystal Structure Analysis Of
Crosslinked-Wga3GLCNACBETA1,6GALBETA1, 4glc
Length = 186
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 29/35 (82%)
Query: 25 QCGKQAGGALCPNDDCCSKDGFCGITATYCGEGCQ 59
+CG QAGG LCPN+ CCS+ G+CG+ + +CGEGCQ
Sbjct: 88 KCGSQAGGKLCPNNLCCSQWGYCGLGSEFCGEGCQ 122
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 26/36 (72%)
Query: 24 EQCGKQAGGALCPNDDCCSKDGFCGITATYCGEGCQ 59
++CG QAGG CPN+ CCS+ G CG A YCG GCQ
Sbjct: 44 KRCGSQAGGKTCPNNHCCSQYGHCGFGAEYCGAGCQ 79
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%)
Query: 25 QCGKQAGGALCPNDDCCSKDGFCGITATYCGEGCQRQCHHLSSFLDQSTFDEVFPNQN 82
+CG+Q G CPN+ CCS+ G+CG+ YCG+GCQ S + PN +
Sbjct: 2 RCGEQGSGMECPNNLCCSQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGKTCPNNH 59
Score = 42.7 bits (99), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 26/37 (70%)
Query: 23 NEQCGKQAGGALCPNDDCCSKDGFCGITATYCGEGCQ 59
++ CGK AGG +C N+ CCSK G CGI YCG GCQ
Sbjct: 129 DKPCGKDAGGRVCTNNYCCSKWGSCGIGPGYCGAGCQ 165
>pdb|4DWX|A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds
pdb|4DWX|B Chain B, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds
pdb|4DYG|A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds In Complex With (Glcnac)4
pdb|4DYG|B Chain B, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds In Complex With (Glcnac)4
Length = 244
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 65 LSSFLDQSTFDEVFPNQNSSNCPSQGFYTYDALINAAKSFSGFASVGDDGTRK 117
+SS + + FD + ++N C ++GFYTYDA + AA +F GF + G RK
Sbjct: 3 VSSIISHAQFDRMLLHRNDGACQAKGFYTYDAFVAAANAFPGFGATGSTDARK 55
>pdb|2X52|A Chain A, Crystal Structure Of Wheat Germ Agglutinin Isolectin 3 In
Complex With A Synthetic Divalent Carbohydrate Ligand
pdb|2X52|B Chain B, Crystal Structure Of Wheat Germ Agglutinin Isolectin 3 In
Complex With A Synthetic Divalent Carbohydrate Ligand
Length = 171
Score = 48.9 bits (115), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 29/35 (82%)
Query: 25 QCGKQAGGALCPNDDCCSKDGFCGITATYCGEGCQ 59
+CG QAGG LCPN+ CCS+ G+CG+ + +CGEGCQ
Sbjct: 88 KCGSQAGGKLCPNNLCCSQWGYCGLGSEFCGEGCQ 122
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 26/36 (72%)
Query: 24 EQCGKQAGGALCPNDDCCSKDGFCGITATYCGEGCQ 59
++CG QAGG CPN+ CCS+ G CG A YCG GCQ
Sbjct: 44 KRCGSQAGGKTCPNNHCCSQYGHCGFGAEYCGAGCQ 79
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%)
Query: 25 QCGKQAGGALCPNDDCCSKDGFCGITATYCGEGCQRQCHHLSSFLDQSTFDEVFPNQN 82
+CG+Q G CPN+ CCS+ G+CG+ YCG+GCQ S + PN +
Sbjct: 2 RCGEQGSGMECPNNLCCSQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGKTCPNNH 59
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 26/37 (70%)
Query: 23 NEQCGKQAGGALCPNDDCCSKDGFCGITATYCGEGCQ 59
++ CGK AGG +C N+ CCSK G CGI YCG GCQ
Sbjct: 129 DKPCGKDAGGRVCTNNYCCSKWGSCGIGPGYCGAGCQ 165
>pdb|1T0W|A Chain A, 25 Nmr Structures Of Truncated Hevein Of 32 Aa
(Hevein-32) Complex With N,N,N-Triacetylglucosamina
Length = 33
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 24 EQCGKQAGGALCPNDDCCSKDGFCGITATYC 54
EQCG+QAGG LCPN+ CCS+ G+CG T YC
Sbjct: 1 EQCGRQAGGKLCPNNLCCSQWGWCGSTDEYC 31
>pdb|2WGC|A Chain A, 2.2 Angstroms Resolution Structure Analysis Of Two
Refined N- Acetylneuraminyllactose-Wheat Germ
Agglutinin Isolectin Complexes
pdb|2WGC|B Chain B, 2.2 Angstroms Resolution Structure Analysis Of Two
Refined N- Acetylneuraminyllactose-Wheat Germ
Agglutinin Isolectin Complexes
pdb|9WGA|A Chain A, 2.2 Angstroms Resolution Structure Analysis Of Two
Refined N- Acetylneuraminyllactose-Wheat Germ
Agglutinin Isolectin Complexes
pdb|9WGA|B Chain B, 2.2 Angstroms Resolution Structure Analysis Of Two
Refined N- Acetylneuraminyllactose-Wheat Germ
Agglutinin Isolectin Complexes
Length = 171
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 27/36 (75%)
Query: 24 EQCGKQAGGALCPNDDCCSKDGFCGITATYCGEGCQ 59
++CG QAGGA CPN+ CCS+ G CG A YCG GCQ
Sbjct: 44 KRCGSQAGGATCPNNHCCSQYGHCGFGAEYCGAGCQ 79
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 28/35 (80%)
Query: 25 QCGKQAGGALCPNDDCCSKDGFCGITATYCGEGCQ 59
+CG Q+GG LCPN+ CCS+ GFCG+ + +CG GCQ
Sbjct: 88 KCGSQSGGKLCPNNLCCSQWGFCGLGSEFCGGGCQ 122
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 26/37 (70%)
Query: 23 NEQCGKQAGGALCPNDDCCSKDGFCGITATYCGEGCQ 59
++ CGK AGG +C N+ CCSK G CGI YCG GCQ
Sbjct: 129 DKPCGKDAGGRVCTNNYCCSKWGSCGIGPGYCGAGCQ 165
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%)
Query: 25 QCGKQAGGALCPNDDCCSKDGFCGITATYCGEGCQRQCHHLSSFLDQSTFDEVFPNQN 82
+CG+Q CPN+ CCS+ G+CG+ YCG+GCQ S PN +
Sbjct: 2 RCGEQGSNMECPNNLCCSQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGATCPNNH 59
>pdb|1Q9B|A Chain A, Crystal Structure Analysis Of Hev B 6.02 (Hevein) At 1.5
Angstroms Resolution
pdb|1HEV|A Chain A, Hevein: The Nmr Assignment And An Assessment Of
Solution- State Folding For The Agglutinin-Toxin Motif
Length = 43
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Query: 24 EQCGKQAGGALCPNDDCCSKDGFCGITATYCG--EGCQRQC 62
EQCG+QAGG LCPN+ CCS+ G+CG T YC CQ C
Sbjct: 1 EQCGRQAGGKLCPNNLCCSQWGWCGSTDEYCSPDHNCQSNC 41
>pdb|2Z37|A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module (Bjchi3)
pdb|2Z37|B Chain B, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module (Bjchi3)
pdb|2Z37|C Chain C, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module (Bjchi3)
pdb|2Z37|D Chain D, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module (Bjchi3)
Length = 244
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 65 LSSFLDQSTFDEVFPNQNSSNCPSQGFYTYDALINAAKSFSGFASVGDDGTRK 117
LS + + F ++ + N ++C + GF+TYDA I AAKSF F + GD RK
Sbjct: 2 LSGIISRDQFYKMLKHMNDNDCHAVGFFTYDAFITAAKSFPSFGNTGDLAMRK 54
>pdb|2Z39|A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module Glu234ala Mutant (bjchi3-e234a)
pdb|2Z39|B Chain B, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module Glu234ala Mutant (bjchi3-e234a)
Length = 246
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 65 LSSFLDQSTFDEVFPNQNSSNCPSQGFYTYDALINAAKSFSGFASVGDDGTRK 117
LS + + F ++ + N ++C + GF+TYDA I AAKSF F + GD RK
Sbjct: 4 LSGIISRDQFYKMLKHMNDNDCHAVGFFTYDAFITAAKSFPSFGNTGDLAMRK 56
>pdb|2Z38|A Chain A, Crystal Structure Of Chloride Bound Brassica Juncea
Chitinase Catalytic Module (Bjchi3)
Length = 247
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 65 LSSFLDQSTFDEVFPNQNSSNCPSQGFYTYDALINAAKSFSGFASVGDDGTRK 117
LS + + F ++ + N ++C + GF+TYDA I AAKSF F + GD RK
Sbjct: 5 LSGIISRDQFYKMLKHMNDNDCHAVGFFTYDAFITAAKSFPSFGNTGDLAMRK 57
>pdb|1WGC|A Chain A, 2.2 Angstroms Resolution Structure Analysis Of Two Refined
N- Acetylneuraminyllactose-Wheat Germ Agglutinin
Isolectin Complexes
pdb|1WGC|B Chain B, 2.2 Angstroms Resolution Structure Analysis Of Two Refined
N- Acetylneuraminyllactose-Wheat Germ Agglutinin
Isolectin Complexes
pdb|7WGA|A Chain A, 2.2 Angstroms Resolution Structure Analysis Of Two Refined
N- Acetylneuraminyllactose-Wheat Germ Agglutinin
Isolectin Complexes
pdb|7WGA|B Chain B, 2.2 Angstroms Resolution Structure Analysis Of Two Refined
N- Acetylneuraminyllactose-Wheat Germ Agglutinin
Isolectin Complexes
pdb|2CWG|A Chain A, Crystallographic Refinement And Structure Analysis Of The
Complex Of Wheat Germ Agglutinin With A Bivalent
Sialoglycopeptide From Glycophorin A
pdb|2CWG|B Chain B, Crystallographic Refinement And Structure Analysis Of The
Complex Of Wheat Germ Agglutinin With A Bivalent
Sialoglycopeptide From Glycophorin A
pdb|2UVO|A Chain A, High Resolution Crystal Structure Of Wheat Germ Agglutinin
In Complex With N-Acetyl-D-Glucosamine
pdb|2UVO|B Chain B, High Resolution Crystal Structure Of Wheat Germ Agglutinin
In Complex With N-Acetyl-D-Glucosamine
pdb|2UVO|E Chain E, High Resolution Crystal Structure Of Wheat Germ Agglutinin
In Complex With N-Acetyl-D-Glucosamine
pdb|2UVO|F Chain F, High Resolution Crystal Structure Of Wheat Germ Agglutinin
In Complex With N-Acetyl-D-Glucosamine
pdb|2X3T|A Chain A, Glutaraldehyde-Crosslinked Wheat Germ Agglutinin Isolectin
1 Crystal Soaked With A Synthetic Glycopeptide
pdb|2X3T|B Chain B, Glutaraldehyde-Crosslinked Wheat Germ Agglutinin Isolectin
1 Crystal Soaked With A Synthetic Glycopeptide
pdb|2X3T|C Chain C, Glutaraldehyde-Crosslinked Wheat Germ Agglutinin Isolectin
1 Crystal Soaked With A Synthetic Glycopeptide
pdb|2X3T|D Chain D, Glutaraldehyde-Crosslinked Wheat Germ Agglutinin Isolectin
1 Crystal Soaked With A Synthetic Glycopeptide
pdb|4AML|A Chain A, Crystal Structure Of Wheat Germ Agglutinin Isolectin 1 In
Complex With Glycosylurethan
pdb|4AML|B Chain B, Crystal Structure Of Wheat Germ Agglutinin Isolectin 1 In
Complex With Glycosylurethan
Length = 171
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 28/35 (80%)
Query: 25 QCGKQAGGALCPNDDCCSKDGFCGITATYCGEGCQ 59
+CG QAGG LCPN+ CCS+ GFCG+ + +CG GCQ
Sbjct: 88 KCGSQAGGKLCPNNLCCSQWGFCGLGSEFCGGGCQ 122
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 27/36 (75%)
Query: 24 EQCGKQAGGALCPNDDCCSKDGFCGITATYCGEGCQ 59
++CG QAGGA C N+ CCS+ G+CG A YCG GCQ
Sbjct: 44 KRCGSQAGGATCTNNQCCSQYGYCGFGAEYCGAGCQ 79
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 26/37 (70%)
Query: 23 NEQCGKQAGGALCPNDDCCSKDGFCGITATYCGEGCQ 59
++ CGK AGG +C N+ CCSK G CGI YCG GCQ
Sbjct: 129 DKPCGKDAGGRVCTNNYCCSKWGSCGIGPGYCGAGCQ 165
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 25 QCGKQAGGALCPNDDCCSKDGFCGITATYCGEGCQ 59
+CG+Q CPN+ CCS+ G+CG+ YCG+GCQ
Sbjct: 2 RCGEQGSNMECPNNLCCSQYGYCGMGGDYCGKGCQ 36
>pdb|1ULK|A Chain A, Crystal Structure Of Pokeweed Lectin-C
pdb|1ULK|B Chain B, Crystal Structure Of Pokeweed Lectin-C
Length = 126
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 26 CGKQAGGALCPNDDCCSKDGFCGITATYCGEGCQRQCHH---LSSFLDQSTFDEVFPNQ- 81
CG +A G +CP+ CCS+ G+CG T YCG+GCQ QC + F + DE+ +Q
Sbjct: 4 CGVRASGRVCPDGYCCSQWGYCGTTEEYCGKGCQSQCDYNRCGKEFGGKECHDELCCSQY 63
Query: 82 ----NSSNCPSQGFYTYDALINAAKSFSG 106
NS +G + + K F G
Sbjct: 64 GWCGNSDGHCGEGCQSQCSYWRCGKDFGG 92
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 27/38 (71%)
Query: 25 QCGKQAGGALCPNDDCCSKDGFCGITATYCGEGCQRQC 62
+CGK GG LC D CCS+ G+CG+T +C +GCQ QC
Sbjct: 85 RCGKDFGGRLCTEDMCCSQYGWCGLTDDHCEDGCQSQC 122
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%)
Query: 25 QCGKQAGGALCPNDDCCSKDGFCGITATYCGEGCQRQCHHLSSFLD 70
+CGK+ GG C ++ CCS+ G+CG + +CGEGCQ QC + D
Sbjct: 44 RCGKEFGGKECHDELCCSQYGWCGNSDGHCGEGCQSQCSYWRCGKD 89
>pdb|1WKX|A Chain A, Crystal Structure Of A Hev B 6.02 Isoallergen
Length = 43
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Query: 24 EQCGKQAGGALCPNDDCCSKDGFCGITATYCG--EGCQRQC 62
EQCG+QAGG LCP++ CCS+ G+CG T YC CQ C
Sbjct: 1 EQCGRQAGGKLCPDNLCCSQWGWCGSTDEYCSPDHNCQSNC 41
>pdb|2LB7|A Chain A, Hevein-Type Antifungal Peptide With A Unique 10-Cysteine
Motif
Length = 44
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 24 EQCGKQAGGALCPNDDCCSKDGFCGITATYCGEG-CQRQCH 63
++CG QA GA CPN CC K GFCG YCG G CQ QC
Sbjct: 2 QRCGDQARGAKCPNCLCCGKYGFCGSGDAYCGAGSCQSQCR 42
>pdb|1EHD|A Chain A, Crystal Structure Of Urtica Dioica Agglutinin Isolectin
Vi
pdb|1EHH|A Chain A, Crystal Structure Of Urtica Dioica Agglutinin Isolectin
Vi Complex With Tri-N-Acetylchitotriose
pdb|1EHH|B Chain B, Crystal Structure Of Urtica Dioica Agglutinin Isolectin
Vi Complex With Tri-N-Acetylchitotriose
Length = 89
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 25 QCGKQAGGALCPNDDCCSKDGFCGITATYCGEGCQRQC 62
+CG Q GGA CP CCS G+CG + YCG C+ +C
Sbjct: 2 RCGSQGGGATCPGLRCCSIWGWCGDSEPYCGRTCENKC 39
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 23 NEQCGKQAGGALCPNDDCCSKDGFCGITATYCGEG-CQRQC 62
+ +CG G C D CCS G+CG YC G CQ +C
Sbjct: 46 DHRCGAAVGNPPCGQDRCCSVHGWCGGGNDYCSGGKCQYRC 86
>pdb|3HBD|A Chain A, Class Iv Chitinase Structure From Picea Abies At 1.8a
pdb|3HBE|X Chain X, Class Iv Chitinase Structure From Picea Abies At 1.55a
pdb|3HBH|A Chain A, Class Iv Chitinase Structure From Picea Abies At 2.25a
Length = 204
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 65 LSSFLDQSTFDEVFPNQNSSNCPSQGFYTYDALINAAKSFSGFASVGDDGTRK 117
+ + QS F+ + SS C +GFYTY+A I AA ++SGF + G + +K
Sbjct: 2 VGGIISQSFFNGLAGGAASS-CEGKGFYTYNAFIAAANAYSGFGTTGSNDVKK 53
>pdb|1CNS|A Chain A, Crystal Structure Of Chitinase At 1.91a Resolution
pdb|1CNS|B Chain B, Crystal Structure Of Chitinase At 1.91a Resolution
Length = 243
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 34/53 (64%)
Query: 65 LSSFLDQSTFDEVFPNQNSSNCPSQGFYTYDALINAAKSFSGFASVGDDGTRK 117
+SS + ++ FD + ++N C ++GFYTYDA + AA +FSGF + G +K
Sbjct: 2 VSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFSGFGTTGSADVQK 54
>pdb|1IQB|A Chain A, Crystal Structure Of Urtica Dioica Agglutinin Isolectin
I
pdb|1IQB|B Chain B, Crystal Structure Of Urtica Dioica Agglutinin Isolectin
I
Length = 89
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 25 QCGKQAGGALCPNDDCCSKDGFCGITATYCGEGCQRQC 62
+CG Q GG CP CCS G+CG + YCG C+ +C
Sbjct: 2 RCGSQGGGGTCPALWCCSIWGWCGDSEPYCGRTCENKC 39
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 23 NEQCGKQAGGALCPNDDCCSKDGFCGITATYC-GEGCQRQC 62
+ +CG G C D CCS G+CG YC G CQ +C
Sbjct: 46 DHRCGAAVGNPPCGQDRCCSVHGWCGGGNDYCSGSKCQYRC 86
>pdb|2CJL|A Chain A, Crystal Structure And Enzymatic Properties Of A Bacterial
Family 19 Chitinase Reveal Differences With Plant
Enzymes
pdb|2CJL|B Chain B, Crystal Structure And Enzymatic Properties Of A Bacterial
Family 19 Chitinase Reveal Differences With Plant
Enzymes
Length = 204
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 11/70 (15%)
Query: 69 LDQSTFDEVFPNQNSSNCPSQGFYTYDALINAAKSFSGFASVGDDGTRKSTT----RKMG 124
+ ++ FD++FP++NS FYTY L A ++ GF++ G D +K +G
Sbjct: 3 VSEAQFDQMFPSRNS-------FYTYSGLTAALSAYPGFSNTGSDTVKKQEAAAFLANVG 55
Query: 125 FTDAKLVSVI 134
LV V+
Sbjct: 56 HETGGLVYVV 65
>pdb|1WVV|A Chain A, Crystal Structure Of Chitinase C Mutant E147q
pdb|1WVV|B Chain B, Crystal Structure Of Chitinase C Mutant E147q
Length = 265
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 7/49 (14%)
Query: 69 LDQSTFDEVFPNQNSSNCPSQGFYTYDALINAAKSFSGFASVGDDGTRK 117
+ ++ F+++FPN+N+ FYTY L +A ++ FA G D +K
Sbjct: 64 VSEAQFNQMFPNRNA-------FYTYKGLTDALSAYPAFAKTGSDEVKK 105
>pdb|1WVU|A Chain A, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
pdb|1WVU|B Chain B, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
pdb|2DBT|A Chain A, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
pdb|2DBT|B Chain B, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
pdb|2DBT|C Chain C, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
Length = 265
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 7/49 (14%)
Query: 69 LDQSTFDEVFPNQNSSNCPSQGFYTYDALINAAKSFSGFASVGDDGTRK 117
+ ++ F+++FPN+N+ FYTY L +A ++ FA G D +K
Sbjct: 64 VSEAQFNQMFPNRNA-------FYTYKGLTDALSAYPAFAKTGSDEVKK 105
>pdb|2BAA|A Chain A, The Refined Crystal Structure Of An Endochitinase From
Hordeum Vulgare L. Seeds To 1.8 Angstroms Resolution
Length = 243
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 33/53 (62%)
Query: 65 LSSFLDQSTFDEVFPNQNSSNCPSQGFYTYDALINAAKSFSGFASVGDDGTRK 117
+SS + ++ FD + ++N C ++GFYTYDA + AA +F GF + G +K
Sbjct: 2 VSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFPGFGTTGSADAQK 54
>pdb|1EIS|A Chain A, Uda Uncomplexed Form. Crystal Structure Of Urtica Dioica
Agglutinin, A Superantigen Presented By Mhc Molecules
Of Class I And Class Ii
Length = 87
Score = 33.5 bits (75), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 25 QCGKQAGGA-LCPNDDCCSKDGFCGITATYCGEGCQRQC 62
+CG Q GG+ CP CCS G+CG + YCG C+ +C
Sbjct: 2 RCGSQGGGSGTCPGLRCCSIWGWCGDSEPYCGRTCENKC 40
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 23 NEQCGKQAGGALCPNDDCCSKDGFCGITATYC-GEGCQRQC 62
+ +CG G C D CCS G+CG YC G CQ +C
Sbjct: 47 DHRCGAAVGNPPCGQDRCCSVHGWCGGGNDYCSGGNCQYRC 87
>pdb|1EN2|A Chain A, Uda Tetrasaccharide Complex. Crystal Structure Of Urtica
Dioica Agglutinin, A Superantigen Presented By Mhc
Molecules Of Class I And Class Ii
pdb|1ENM|A Chain A, Uda Trisaccharide Complex. Crystal Structure Of Urtica
Dioica Agglutinin, A Superantigen Presented By Mhc
Molecules Of Class I And Class Ii
Length = 91
Score = 29.3 bits (64), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 25 QCGKQAGGA-LCPN--DDCCSKDGFCGITATYCGEGCQRQC 62
+CG Q GG+ CP CCS G+CG + YCG C+ +C
Sbjct: 2 RCGSQGGGSGTCPGALRWCCSIWGWCGDSEPYCGRTCENKC 42
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 23 NEQCGKQAGGALCPNDDCCSKDGFCGITATYCGEG---CQRQC 62
+ +CG G C D CCS G+CG YC G CQ +C
Sbjct: 49 DHRCGAAVGNPPCGQDRCCSVHGWCGGGNDYCSGGSNKCQYRC 91
>pdb|1ZWU|A Chain A, 30 Nmr Structures Of Acamp2-Like Peptide With Non
Natural Beta-(2- Naphthyl)-Alanine Residue
Length = 30
Score = 27.3 bits (59), Expect = 2.9, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 35 CPNDDCCSKDGFCGITATYCG 55
CP+ CCS+ G+CG YCG
Sbjct: 9 CPSGMCCSQXGYCGKGPKYCG 29
>pdb|1ZUV|A Chain A, 24 Nmr Structures Of Acamp2-Like Peptide With
Phenylalanine 18 Mutated To Tryptophan
Length = 30
Score = 27.3 bits (59), Expect = 3.1, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 35 CPNDDCCSKDGFCGITATYCG 55
CP+ CCS+ G+CG YCG
Sbjct: 9 CPSGMCCSQWGYCGKGPKYCG 29
>pdb|1MMC|A Chain A, 1h Nmr Study Of The Solution Structure Of Ac-Amp2
Length = 30
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 35 CPNDDCCSKDGFCGITATYCGE 56
CP+ CCS+ G+CG YCG
Sbjct: 9 CPSGMCCSQFGYCGKGPKYCGR 30
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,951,185
Number of Sequences: 62578
Number of extensions: 145186
Number of successful extensions: 360
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 297
Number of HSP's gapped (non-prelim): 59
length of query: 140
length of database: 14,973,337
effective HSP length: 89
effective length of query: 51
effective length of database: 9,403,895
effective search space: 479598645
effective search space used: 479598645
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)