Query 035991
Match_columns 140
No_of_seqs 190 out of 708
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 08:20:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035991.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035991hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4742 Predicted chitinase [G 99.9 3.8E-25 8.1E-30 184.2 6.5 89 49-137 36-151 (286)
2 PF00182 Glyco_hydro_19: Chiti 99.9 4E-25 8.7E-30 179.9 0.2 70 68-137 1-74 (232)
3 cd00325 chitinase_glyco_hydro_ 99.9 2.4E-24 5.2E-29 175.3 3.9 69 69-137 1-73 (230)
4 PF00187 Chitin_bind_1: Chitin 99.6 6.6E-16 1.4E-20 95.3 1.1 40 23-62 1-40 (40)
5 smart00270 ChtBD1 Chitin bindi 99.5 3.1E-14 6.8E-19 86.9 2.9 38 25-62 1-38 (38)
6 cd00035 ChtBD1 Chitin binding 99.2 5.5E-12 1.2E-16 77.6 2.4 38 25-62 1-38 (40)
7 cd06918 ChtBD1_like Domain obs 97.4 0.00014 3.1E-09 47.0 2.4 38 22-59 3-49 (51)
8 PF06607 Prokineticin: Prokine 74.3 1.3 2.9E-05 32.0 0.6 25 20-47 20-44 (97)
9 PRK15291 fimbrial protein StgD 70.8 3.3 7.2E-05 36.1 2.4 30 1-30 1-31 (355)
10 COG3179 Predicted chitinase [G 67.2 2.8 6.1E-05 34.1 1.1 55 68-136 3-62 (206)
11 PF02950 Conotoxin: Conotoxin; 56.1 6.1 0.00013 26.0 1.0 8 1-8 1-8 (75)
12 PF07172 GRP: Glycine rich pro 53.0 14 0.0003 26.4 2.5 7 5-11 5-11 (95)
13 PRK15321 putative type III sec 42.3 15 0.00033 27.1 1.4 31 93-123 18-49 (120)
14 PF15240 Pro-rich: Proline-ric 35.5 27 0.00058 28.0 1.9 7 6-12 3-9 (179)
15 cd08778 Death_TNFRSF21 Death d 35.1 11 0.00023 26.3 -0.4 8 116-123 28-35 (84)
16 PF10873 DUF2668: Protein of u 34.0 22 0.00047 27.8 1.1 19 94-112 100-118 (155)
17 PF08194 DIM: DIM protein; In 30.5 55 0.0012 19.7 2.2 6 1-6 1-6 (36)
18 PF01616 Orbi_NS3: Orbivirus N 22.2 35 0.00077 27.6 0.5 15 109-123 37-51 (195)
19 PF05353 Atracotoxin: Delta At 20.4 49 0.0011 20.5 0.7 16 40-55 1-16 (42)
No 1
>KOG4742 consensus Predicted chitinase [General function prediction only]
Probab=99.91 E-value=3.8e-25 Score=184.22 Aligned_cols=89 Identities=31% Similarity=0.624 Sum_probs=81.7
Q ss_pred Cchhhhhccccc-CC---------ccCCcccchhhhhccCCCCCCCCCCCCCcccHHHHHHHHhcCCCCCCCCCCcchhh
Q 035991 49 ITATYCGEGCQR-QC---------HHLSSFLDQSTFDEVFPNQNSSNCPSQGFYTYDALINAAKSFSGFASVGDDGTRKS 118 (140)
Q Consensus 49 ~t~~yCg~gCq~-~c---------gsvssiiT~alFn~mf~~rn~~~C~g~gFYTy~aFi~Aa~~fp~Fg~tG~~~~~kR 118 (140)
++..||+.+|++ +| ++++++||+++||+||+++|++.|++++||||++||.|+++||+||++|+..++||
T Consensus 36 ~~~~~~~~~c~~g~c~~~~~~~p~~~i~~~~T~~~F~~i~~~~~~g~c~~~gfyty~aFi~Aa~sfp~fg~t~~~~~~kr 115 (286)
T KOG4742|consen 36 TTPPYCKFGCGPGPCSGPGPPNPASKIESSVTPELFEDIFSKVGSGWCPAKGFYTYDAFIIAARSFPEFGGTGNKNTAKR 115 (286)
T ss_pred cccccccCCCCCCCCCCCCCCCCcccccccccHHHHHHHhccccCCCCCCCCCccccHHHHHHHhcccccccCcccccch
Confidence 566788888776 45 46999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcc----cccC---------C----ceEEEEEcC
Q 035991 119 TTRKM----GFTD---------A----KLVSVITFP 137 (140)
Q Consensus 119 ElAAf----~het---------~----~~~~~~~~~ 137 (140)
||||| +||| + +|+|++|+-
T Consensus 116 eiAaf~ah~~~ETs~g~~~~~~G~~~~~fc~~~e~s 151 (286)
T KOG4742|consen 116 EIAAFFAHVTHETSGGSNCAPRGPFYWGFCYKEEIS 151 (286)
T ss_pred hhhhhhhhheecccCcccccCCCccccCcccccccC
Confidence 99999 9999 6 899999863
No 2
>PF00182 Glyco_hydro_19: Chitinase class I; InterPro: IPR000726 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 19 GH19 from CAZY comprises enzymes with only one known activity; chitinase (3.2.1.14 from EC). Chitinases [] are enzymes that catalyse the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Chitinases belong to glycoside hydrolase families 18 or 19 []. Chitinases of family 19 (also known as classes IA or I and IB or II) are enzymes from plants that function in the defence against fungal and insect pathogens by destroying their chitin-containing cell wall. Class IA/I and IB/II enzymes differ in the presence (IA/I) or absence (IB/II) of a N-terminal chitin-binding domain. The catalytic domain of these enzymes consist of about 220 to 230 amino acid residues.; GO: 0004568 chitinase activity, 0006032 chitin catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 3IWR_A 2DKV_A 3CQL_A 2Z38_A 2Z37_D 2Z39_B 1DXJ_A 1WVU_B 1WVV_B 2DBT_C ....
Probab=99.90 E-value=4e-25 Score=179.88 Aligned_cols=70 Identities=37% Similarity=0.718 Sum_probs=65.2
Q ss_pred ccchhhhhccCCCCCCCCCCCCCcccHHHHHHHHhcCCCCCCCCCCcchhhhhhcc----cccCCceEEEEEcC
Q 035991 68 FLDQSTFDEVFPNQNSSNCPSQGFYTYDALINAAKSFSGFASVGDDGTRKSTTRKM----GFTDAKLVSVITFP 137 (140)
Q Consensus 68 iiT~alFn~mf~~rn~~~C~g~gFYTy~aFi~Aa~~fp~Fg~tG~~~~~kRElAAf----~het~~~~~~~~~~ 137 (140)
|||+++||+||||||+..|++++||||++||+|+++||+|+++|+++++||||||| +|||+++.+++|..
T Consensus 1 ivt~~~F~~~~~~~n~~~c~~~~FYTY~~Fi~Aa~~fp~F~~tG~~~~~krElAAFLA~~~hET~g~~~~~e~~ 74 (232)
T PF00182_consen 1 IVTESFFNQMFPHRNDNGCPGKGFYTYDAFIAAAKSFPAFGNTGDDEDRKRELAAFLAQVSHETGGFWYIEEIG 74 (232)
T ss_dssp TS-HHHHHHHTTTTTSTTSTTTTTS-HHHHHHHHTTSTTTTTSSSHHHHHHHHHHHHHHHHHHTTTTTTTBTTS
T ss_pred CCCHHHHHHHHhcCCccCCCCCCcccHHHHHHHhhcCchhccCccHHHHHHHHHhhhcccchhccccccccccc
Confidence 68999999999999999999999999999999999999999999999999999999 99999999887754
No 3
>cd00325 chitinase_glyco_hydro_19 Glycoside hydrolase family 19 chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases but they are smaller in size due to certain deletions. Despite any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different en
Probab=99.89 E-value=2.4e-24 Score=175.30 Aligned_cols=69 Identities=39% Similarity=0.710 Sum_probs=66.5
Q ss_pred cchhhhhccCCCCCCCCCCCCCcccHHHHHHHHhcCCCCCCCCCCcchhhhhhcc----cccCCceEEEEEcC
Q 035991 69 LDQSTFDEVFPNQNSSNCPSQGFYTYDALINAAKSFSGFASVGDDGTRKSTTRKM----GFTDAKLVSVITFP 137 (140)
Q Consensus 69 iT~alFn~mf~~rn~~~C~g~gFYTy~aFi~Aa~~fp~Fg~tG~~~~~kRElAAf----~het~~~~~~~~~~ 137 (140)
||+++||+||+|||+..||+++||||++||+|+++||+|+++|+++++||||||| +|||+|+++++|.+
T Consensus 1 ~t~~~f~~~~~~~~~~~c~~~~fYTy~~fi~Aa~~fp~f~~~g~~~~~krElAaFlAq~~hETgg~~~~~e~~ 73 (230)
T cd00325 1 VTESLFEGIFSHRNDSGCPAKGFYTYDAFITAANSFPGFGTTGDDDTRKREIAAFFAHTSHETGGGCYIAPDG 73 (230)
T ss_pred CCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHHHhccccccCCCchhhHHHHHHHHhhhcccCCCCccccccc
Confidence 6899999999999999999999999999999999999999999999999999999 99999999998864
No 4
>PF00187 Chitin_bind_1: Chitin recognition protein; InterPro: IPR001002 A number of plant and fungal proteins that bind N-acetylglucosamine (e.g. solanaceous lectins of tomato and potato, plant endochitinases, the wound-induced proteins: hevein, win1 and win2, and the Kluyveromyces lactis killer toxin alpha subunit) contain this domain []. The domain may occur in one or more copies and is thought to be involved in recognition or binding of chitin subunits [, ]. In chitinases, as well as in the potato wound-induced proteins, the 43-residue domain directly follows the signal sequence and is therefore at the N terminus of the mature protein; in the killer toxin alpha subunit it is located in the central section of the protein. ; GO: 0008061 chitin binding; PDB: 9WGA_B 2WGC_B 1ULK_B 2UVO_B 1WGC_B 2CWG_A 2X3T_C 4AML_B 7WGA_B 1ZWU_A ....
Probab=99.56 E-value=6.6e-16 Score=95.25 Aligned_cols=40 Identities=63% Similarity=1.493 Sum_probs=36.4
Q ss_pred cCcccCCcCCCCCCCCcccCcCcccCCchhhhhcccccCC
Q 035991 23 NEQCGKQAGGALCPNDDCCSKDGFCGITATYCGEGCQRQC 62 (140)
Q Consensus 23 ~~~CG~~~~~~~C~~~~CCS~~G~CG~t~~yCg~gCq~~c 62 (140)
+++||++.++.+||.+.|||+|||||++.+||+.+||++|
T Consensus 1 a~~CG~~~~~~~Cp~~~CCS~~G~CG~t~~yCg~gCQ~~C 40 (40)
T PF00187_consen 1 AQRCGRQAGGATCPNGLCCSQYGYCGTTSDYCGAGCQSQC 40 (40)
T ss_dssp -CBSSGGGTTBBSGGG-EEETTSBEESSHHHHSTTEESST
T ss_pred CcccccCcCCCcCCCCCccCCCCcccCChhhhhcccccCC
Confidence 4789999899999999999999999999999999999987
No 5
>smart00270 ChtBD1 Chitin binding domain.
Probab=99.47 E-value=3.1e-14 Score=86.92 Aligned_cols=38 Identities=61% Similarity=1.498 Sum_probs=36.4
Q ss_pred cccCCcCCCCCCCCcccCcCcccCCchhhhhcccccCC
Q 035991 25 QCGKQAGGALCPNDDCCSKDGFCGITATYCGEGCQRQC 62 (140)
Q Consensus 25 ~CG~~~~~~~C~~~~CCS~~G~CG~t~~yCg~gCq~~c 62 (140)
+||+++++.+|+.+.|||+|||||++.+||+.|||++|
T Consensus 1 ~CG~~~g~~~C~~~~CCS~~G~CG~t~~yCg~gCqs~c 38 (38)
T smart00270 1 RCGSQAGGKVCPNNLCCSQFGYCGSGDEYCGKGCQSQC 38 (38)
T ss_pred CCcCCCCCCcCCCCCccCCCcCccCCHHHHhccccCCC
Confidence 69999999999999999999999999999999999987
No 6
>cd00035 ChtBD1 Chitin binding domain, involved in recognition or binding of chitin subunits; fold analogous to hevein; occurs in plant and fungal proteins that bind N-acetylglucosamine, plant endochitinases, wound-induced proteins, and K.lactis killer toxin alpha subunit, occurs singly or multiply
Probab=99.22 E-value=5.5e-12 Score=77.59 Aligned_cols=38 Identities=58% Similarity=1.412 Sum_probs=36.3
Q ss_pred cccCCcCCCCCCCCcccCcCcccCCchhhhhcccccCC
Q 035991 25 QCGKQAGGALCPNDDCCSKDGFCGITATYCGEGCQRQC 62 (140)
Q Consensus 25 ~CG~~~~~~~C~~~~CCS~~G~CG~t~~yCg~gCq~~c 62 (140)
+||+++++..|+.+.|||++||||++.+||+.+||+.|
T Consensus 1 ~Cg~~~~~~~C~~~~CCS~~G~CG~t~~~Cg~gcq~~c 38 (40)
T cd00035 1 NCGRQAGGGGCPPGLCCSQFGYCGTTDDYCGRGCQSGC 38 (40)
T ss_pred CCCccCCCCcCCCCccccccccccCCcccccccccccc
Confidence 69999999999999999999999999999999999987
No 7
>cd06918 ChtBD1_like Domain observed in several metazoan proteins. The pattern of conserved cysteine residues resembles that of chitin binding domains found in plants and fungi.
Probab=97.35 E-value=0.00014 Score=46.97 Aligned_cols=38 Identities=32% Similarity=0.919 Sum_probs=28.1
Q ss_pred ccCcccCCc-----CCCCCCC---CcccCcCcccCCchhhhh-cccc
Q 035991 22 ENEQCGKQA-----GGALCPN---DDCCSKDGFCGITATYCG-EGCQ 59 (140)
Q Consensus 22 ~~~~CG~~~-----~~~~C~~---~~CCS~~G~CG~t~~yCg-~gCq 59 (140)
.+.+||... +-..|.. ..|||.+||||.+.+||. .+|.
T Consensus 3 ~dgrCG~~~p~~~g~~~~CdPdg~~pCCS~~gwCG~t~~hC~C~~Cv 49 (51)
T cd06918 3 KDGRCGPKFPLPGGKPPECDPDSPKPCCSNGGYCGSGSEHCDCPGCV 49 (51)
T ss_pred cCCccCCCccCCCCCccccCCCCCCcccCCCceeCCCcccccCCCCc
Confidence 367788765 1234754 599999999999999997 6663
No 8
>PF06607 Prokineticin: Prokineticin; InterPro: IPR023569 The prokineticin family includes prokinectin itself and related proteins such as BM8 and the AVIToxins. The suprachiasmatic nucleus (SCN) controls the circadian rhythm of physiological and behavioural processes in mammals. It has been shown that prokineticin 2 (PK2), a cysteine-rich secreted protein, functions as an output molecule from the SCN circadian clock. PK2 messenger RNA is rhythmically expressed in the SCN, and the phase of PK2 rhythm is responsive to light entrainment. Molecular and genetic studies have revealed that PK2 is a gene that is controlled by a circadian clock []. The prokinectin domain is found in the prokinectin family and the hainantoxins, where it comprises the whole length of the protein. This domain is also found at the C terminus of some members of the Dickkopf family.; PDB: 1IMT_A 2KRA_A.
Probab=74.31 E-value=1.3 Score=32.00 Aligned_cols=25 Identities=20% Similarity=0.549 Sum_probs=12.8
Q ss_pred hcccCcccCCcCCCCCCCCcccCcCccc
Q 035991 20 SAENEQCGKQAGGALCPNDDCCSKDGFC 47 (140)
Q Consensus 20 ~~~~~~CG~~~~~~~C~~~~CCS~~G~C 47 (140)
.+-.+.|-. ...|..+.||+.+-|=
T Consensus 20 ~vitg~C~~---d~dCg~G~CCA~~~~~ 44 (97)
T PF06607_consen 20 AVITGACES---DADCGPGTCCAVSNWR 44 (97)
T ss_dssp ---SSC-SS---GGGT-TTEEECE-SS-
T ss_pred eEEeccccC---cCCCCCCceeCccccc
Confidence 334566654 4568889999987554
No 9
>PRK15291 fimbrial protein StgD; Provisional
Probab=70.83 E-value=3.3 Score=36.08 Aligned_cols=30 Identities=23% Similarity=0.423 Sum_probs=19.3
Q ss_pred CchHHHHHHHHHHHHHH-hhhcccCcccCCc
Q 035991 1 MKFQAFLLFSLVLSFLL-VISAENEQCGKQA 30 (140)
Q Consensus 1 ~~~~~~~~~~~~~~~~~-~~~~~~~~CG~~~ 30 (140)
||||++++|.|++..|- .+.+..+.|.+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~a~~G~c~~~g 31 (355)
T PRK15291 1 MRLWTIILFSCFMVLISPVCRAGDGICHAVK 31 (355)
T ss_pred CcchhHHHHHHHHHhhccccccccCceecCC
Confidence 99999988876553332 3344478886553
No 10
>COG3179 Predicted chitinase [General function prediction only]
Probab=67.18 E-value=2.8 Score=34.08 Aligned_cols=55 Identities=11% Similarity=0.162 Sum_probs=38.4
Q ss_pred ccchhhhhccCCCCCCCCCCCCCcccHHHHHHHHh-cCCCCCCCCCCcchhhhhhcc----cccCCceEEEEEc
Q 035991 68 FLDQSTFDEVFPNQNSSNCPSQGFYTYDALINAAK-SFSGFASVGDDGTRKSTTRKM----GFTDAKLVSVITF 136 (140)
Q Consensus 68 iiT~alFn~mf~~rn~~~C~g~gFYTy~aFi~Aa~-~fp~Fg~tG~~~~~kRElAAf----~het~~~~~~~~~ 136 (140)
.+++..|.+|+|+.- +.| - .++.|+. ....||- +++-.+|.| .||++||.-++|.
T Consensus 3 ~i~e~~~~ki~p~a~------k~~--~-~v~~al~~~l~~~gi-----~~p~r~AmFlAQ~~HESggf~rl~En 62 (206)
T COG3179 3 TITEVDLRKIFPKAR------KEF--V-DVIVALQPALDEAGI-----TTPLRQAMFLAQVMHESGGFTRLDEN 62 (206)
T ss_pred chhHHHHHHhcchhh------hhh--H-HHHHHHHHHHHHhcC-----CCHHHHHHHHHHHhhhcCCceeehhh
Confidence 477888999999842 344 2 3333444 4556763 347778999 9999999988874
No 11
>PF02950 Conotoxin: Conotoxin; InterPro: IPR004214 Cone snail toxins, conotoxins, are small neurotoxic peptides with disulphide connectivity that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cysteine knot scaffold. The knottin scaffold is a very special disulphide-through-disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network, as well as specific amino acids in inter-cysteine loops, provide the specificity of conotoxins []. The cysteine arrangements are the same for omega, delta and kappa families, even though omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels, and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangements, but the knottin scaffold is not observed. Mu conotoxins target the voltage-gated sodium channels [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangements [], and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2EFZ_A 1FYG_A 1RMK_A 1DG0_A 1DFY_A 1DFZ_A 2JQC_A 2YYF_A 2JQB_A 1F3K_A ....
Probab=56.09 E-value=6.1 Score=25.97 Aligned_cols=8 Identities=38% Similarity=0.704 Sum_probs=0.0
Q ss_pred CchHHHHH
Q 035991 1 MKFQAFLL 8 (140)
Q Consensus 1 ~~~~~~~~ 8 (140)
|||..++|
T Consensus 1 mKLt~vli 8 (75)
T PF02950_consen 1 MKLTCVLI 8 (75)
T ss_dssp --------
T ss_pred CCcchHHH
Confidence 78874444
No 12
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=53.02 E-value=14 Score=26.42 Aligned_cols=7 Identities=71% Similarity=1.132 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 035991 5 AFLLFSL 11 (140)
Q Consensus 5 ~~~~~~~ 11 (140)
++||+.|
T Consensus 5 ~~llL~l 11 (95)
T PF07172_consen 5 AFLLLGL 11 (95)
T ss_pred HHHHHHH
Confidence 3444333
No 13
>PRK15321 putative type III secretion system effector protein OrgC; Provisional
Probab=42.30 E-value=15 Score=27.14 Aligned_cols=31 Identities=16% Similarity=0.099 Sum_probs=24.1
Q ss_pred cHHHHHHHHhcCCCCCCCC-CCcchhhhhhcc
Q 035991 93 TYDALINAAKSFSGFASVG-DDGTRKSTTRKM 123 (140)
Q Consensus 93 Ty~aFi~Aa~~fp~Fg~tG-~~~~~kRElAAf 123 (140)
-|++|..+..+.|....+- -.|+--||+-||
T Consensus 18 lydAF~Q~l~~LP~la~S~~~KD~I~q~m~~F 49 (120)
T PRK15321 18 LYDAFYQRLLALPESASSETLKDSIYQEMNAF 49 (120)
T ss_pred HHHHHHHHHHhCCcccCcHHHHHHHHHHHHHh
Confidence 3999999999999966432 234567899999
No 14
>PF15240 Pro-rich: Proline-rich
Probab=35.52 E-value=27 Score=27.98 Aligned_cols=7 Identities=29% Similarity=0.662 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 035991 6 FLLFSLV 12 (140)
Q Consensus 6 ~~~~~~~ 12 (140)
||||+.|
T Consensus 3 lVLLSvA 9 (179)
T PF15240_consen 3 LVLLSVA 9 (179)
T ss_pred hHHHHHH
Confidence 3444443
No 15
>cd08778 Death_TNFRSF21 Death domain of tumor necrosis factor receptor superfamily member 21. Death domain (DD) found in tumor necrosis factor receptor superfamily member 21 (TNFRSF21), also called death receptor-6, DR6. DR6 is an orphan receptor that is expressed ubiquitously, but shows high expression in lymphoid organs, heart, brain and pancreas. Results from DR6(-/-) mice indicate that DR6 plays an important regulatory role for the generation of adaptive immunity. It may also be involved in tumor cell survival and immune evasion. In neuronal cells, it binds beta-amyloid precursor protein (APP) and activates caspase-dependent cell death. It may contribute to the pathogenesis of Alzheimer's disease. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitme
Probab=35.08 E-value=11 Score=26.29 Aligned_cols=8 Identities=0% Similarity=0.057 Sum_probs=6.0
Q ss_pred hhhhhhcc
Q 035991 116 RKSTTRKM 123 (140)
Q Consensus 116 ~kRElAAf 123 (140)
..||+|||
T Consensus 28 terevaaf 35 (84)
T cd08778 28 SEREVAAF 35 (84)
T ss_pred hHHHHHHH
Confidence 35888888
No 16
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=34.04 E-value=22 Score=27.85 Aligned_cols=19 Identities=21% Similarity=0.153 Sum_probs=10.5
Q ss_pred HHHHHHHHhcCCCCCCCCC
Q 035991 94 YDALINAAKSFSGFASVGD 112 (140)
Q Consensus 94 y~aFi~Aa~~fp~Fg~tG~ 112 (140)
..+-|++..+||+--.+.+
T Consensus 100 ~tt~in~v~SyP~apPpys 118 (155)
T PF10873_consen 100 RTTHINAVSSYPAAPPPYS 118 (155)
T ss_pred eccccccccccCCCCCCcc
Confidence 4455666667776443443
No 17
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=30.54 E-value=55 Score=19.72 Aligned_cols=6 Identities=33% Similarity=0.456 Sum_probs=3.8
Q ss_pred CchHHH
Q 035991 1 MKFQAF 6 (140)
Q Consensus 1 ~~~~~~ 6 (140)
||...+
T Consensus 1 Mk~l~~ 6 (36)
T PF08194_consen 1 MKCLSL 6 (36)
T ss_pred CceeHH
Confidence 676655
No 18
>PF01616 Orbi_NS3: Orbivirus NS3; InterPro: IPR002565 This is a family of Orbivirus non structural protein of unknown function, but which may play a role in release of the virus from infected cells [].
Probab=22.16 E-value=35 Score=27.61 Aligned_cols=15 Identities=13% Similarity=0.268 Sum_probs=13.9
Q ss_pred CCCCCcchhhhhhcc
Q 035991 109 SVGDDGTRKSTTRKM 123 (140)
Q Consensus 109 ~tG~~~~~kRElAAf 123 (140)
+||.++.+|+|=|||
T Consensus 37 tTGA~~~~K~EKaAy 51 (195)
T PF01616_consen 37 TTGATEAQKNEKAAY 51 (195)
T ss_pred CccCchhhhHHHHHH
Confidence 579999999999999
No 19
>PF05353 Atracotoxin: Delta Atracotoxin; InterPro: IPR008017 Delta atracotoxin produces potentially fatal neurotoxic symptoms in primates by slowing the inactivation of voltage-gated sodium channels []. The structure of atracotoxin comprises a core beta region containing a triple-stranded a thumb-like extension protruding from the beta region and a C-terminal helix. The beta region contains a cystine knot motif, a feature seen in other neurotoxic polypeptides [].; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2ROO_A 1VTX_A 1QDP_A.
Probab=20.42 E-value=49 Score=20.51 Aligned_cols=16 Identities=38% Similarity=0.970 Sum_probs=10.4
Q ss_pred ccCcCcccCCchhhhh
Q 035991 40 CCSKDGFCGITATYCG 55 (140)
Q Consensus 40 CCS~~G~CG~t~~yCg 55 (140)
|-+..+|||.+.|-|-
T Consensus 1 Ca~kr~WC~ktedCCC 16 (42)
T PF05353_consen 1 CAKKRAWCGKTEDCCC 16 (42)
T ss_dssp -B-TTSB-SSCCCBST
T ss_pred CccchhhhccccccCc
Confidence 4467889999998774
Done!