Query 035998
Match_columns 1020
No_of_seqs 952 out of 7085
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 14:10:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035998.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035998hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 6.9E-80 2.3E-84 768.7 33.8 599 30-650 8-751 (768)
2 3rgz_A Protein brassinosteroid 100.0 3.1E-62 1E-66 609.6 29.6 527 108-643 76-720 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 1.4E-57 4.7E-62 562.8 45.0 573 62-639 3-621 (680)
4 3t6q_A CD180 antigen; protein- 100.0 3.6E-57 1.2E-61 551.5 35.4 535 58-638 5-558 (606)
5 4eco_A Uncharacterized protein 100.0 2.2E-58 7.5E-63 561.6 20.2 474 31-617 27-600 (636)
6 4ecn_A Leucine-rich repeat pro 100.0 3.6E-57 1.2E-61 558.3 30.8 491 29-617 264-864 (876)
7 3vq2_A TLR4, TOLL-like recepto 100.0 2.9E-56 9.9E-61 543.4 33.9 506 66-621 14-562 (606)
8 3j0a_A TOLL-like receptor 5; m 100.0 8.2E-56 2.8E-60 557.4 38.0 504 63-621 4-564 (844)
9 1ziw_A TOLL-like receptor 3; i 100.0 1.3E-55 4.5E-60 545.0 38.9 549 89-642 8-599 (680)
10 3t6q_A CD180 antigen; protein- 100.0 1.3E-54 4.6E-59 528.8 30.0 507 89-643 16-539 (606)
11 3vq2_A TLR4, TOLL-like recepto 100.0 2.9E-53 9.8E-58 517.0 26.9 523 89-640 15-558 (606)
12 3j0a_A TOLL-like receptor 5; m 100.0 6.7E-52 2.3E-56 521.8 31.0 494 89-639 8-559 (844)
13 2z63_A TOLL-like receptor 4, v 100.0 2.1E-50 7.3E-55 488.2 36.7 486 66-623 10-537 (570)
14 4asz_A BDNF/NT-3 growth factor 100.0 5.7E-52 1.9E-56 451.6 14.9 259 742-1019 13-287 (299)
15 4aoj_A High affinity nerve gro 100.0 3.4E-51 1.1E-55 451.9 19.7 259 742-1019 41-317 (329)
16 2z81_A CD282 antigen, TOLL-lik 100.0 4.7E-50 1.6E-54 482.7 26.7 485 62-622 3-515 (549)
17 4gt4_A Tyrosine-protein kinase 100.0 6.3E-51 2.1E-55 445.3 16.3 258 743-1019 27-304 (308)
18 3omv_A RAF proto-oncogene seri 100.0 1.4E-49 4.8E-54 432.4 22.2 259 741-1019 35-298 (307)
19 2z63_A TOLL-like receptor 4, v 100.0 1.3E-48 4.5E-53 472.5 30.8 501 90-642 12-533 (570)
20 4eco_A Uncharacterized protein 100.0 4.2E-50 1.4E-54 488.7 13.4 453 109-640 81-600 (636)
21 2z7x_B TOLL-like receptor 1, v 100.0 3.9E-49 1.3E-53 471.1 19.8 452 88-621 3-485 (520)
22 4b9d_A Serine/threonine-protei 100.0 3E-49 1E-53 435.5 16.7 250 742-1014 24-276 (350)
23 4fih_A Serine/threonine-protei 100.0 1.8E-48 6.2E-53 428.6 22.5 249 742-1014 74-323 (346)
24 4g3f_A NF-kappa-beta-inducing 100.0 1.3E-48 4.3E-53 428.7 19.4 253 741-1019 57-314 (336)
25 4aw0_A HPDK1, 3-phosphoinositi 100.0 1.5E-48 5.2E-53 422.7 18.9 248 742-1013 32-283 (311)
26 4ase_A Vascular endothelial gr 100.0 3.5E-48 1.2E-52 431.0 20.1 269 734-1020 56-346 (353)
27 2z81_A CD282 antigen, TOLL-lik 100.0 3.7E-47 1.3E-51 457.4 28.6 474 90-640 10-510 (549)
28 4g8a_A TOLL-like receptor 4; l 100.0 1.9E-46 6.6E-51 459.8 35.4 485 66-622 34-560 (635)
29 3fpq_A Serine/threonine-protei 100.0 1.6E-47 5.5E-52 413.1 22.7 246 745-1014 29-282 (290)
30 4ecn_A Leucine-rich repeat pro 100.0 8.7E-48 3E-52 474.8 23.1 441 109-621 323-844 (876)
31 3hyh_A Carbon catabolite-derep 100.0 2.8E-47 9.7E-52 407.4 23.8 248 742-1017 13-267 (275)
32 4fie_A Serine/threonine-protei 100.0 2.5E-47 8.4E-52 429.9 24.5 250 741-1014 150-400 (423)
33 3hmm_A TGF-beta receptor type- 100.0 1.1E-47 3.9E-52 421.1 19.3 267 742-1019 3-295 (303)
34 2z7x_B TOLL-like receptor 1, v 100.0 4.1E-47 1.4E-51 453.7 18.7 452 112-641 3-482 (520)
35 3ubd_A Ribosomal protein S6 ki 100.0 4.4E-47 1.5E-51 411.6 14.4 247 742-1014 24-281 (304)
36 4g31_A Eukaryotic translation 100.0 2.2E-45 7.5E-50 400.6 20.3 251 742-1014 5-279 (299)
37 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.1E-45 7.3E-50 442.5 22.1 453 88-622 34-515 (562)
38 2qkw_B Protein kinase; three-h 100.0 6.9E-44 2.4E-48 397.7 22.6 286 731-1019 28-313 (321)
39 4g8a_A TOLL-like receptor 4; l 100.0 2.7E-43 9.1E-48 431.9 28.3 502 91-644 37-559 (635)
40 4b99_A Mitogen-activated prote 100.0 3.3E-44 1.1E-48 406.3 18.5 263 741-1014 53-344 (398)
41 4f9c_A Cell division cycle 7-r 100.0 2.2E-43 7.6E-48 395.5 21.2 202 736-949 15-249 (361)
42 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 8.6E-43 2.9E-47 419.8 26.2 453 65-597 33-514 (562)
43 3v47_A TOLL-like receptor 5B a 100.0 2.6E-42 8.8E-47 405.0 27.1 387 61-490 6-413 (455)
44 3v47_A TOLL-like receptor 5B a 100.0 9.4E-43 3.2E-47 408.7 22.7 383 160-624 14-415 (455)
45 1jl5_A Outer protein YOPM; leu 100.0 1.5E-42 5.1E-47 403.6 23.9 262 84-387 10-271 (454)
46 3uim_A Brassinosteroid insensi 100.0 2E-42 6.9E-47 386.8 21.4 290 728-1018 16-308 (326)
47 3v5w_A G-protein coupled recep 100.0 3.4E-42 1.2E-46 404.5 23.1 248 742-1014 189-449 (689)
48 1jl5_A Outer protein YOPM; leu 100.0 5.4E-42 1.9E-46 398.8 23.5 391 77-622 25-434 (454)
49 1ogq_A PGIP-2, polygalacturona 100.0 1.3E-42 4.4E-47 384.9 16.5 295 30-363 2-306 (313)
50 3uto_A Twitchin; kinase, muscl 100.0 1.7E-42 5.9E-47 412.1 18.6 251 742-1014 157-410 (573)
51 2psq_A Fibroblast growth facto 100.0 9.1E-41 3.1E-45 379.1 20.0 261 741-1020 80-363 (370)
52 3s95_A LIMK-1, LIM domain kina 100.0 6.2E-40 2.1E-44 363.8 25.3 259 741-1019 9-280 (310)
53 2nru_A Interleukin-1 receptor- 100.0 2.2E-39 7.5E-44 358.9 29.3 281 730-1019 13-304 (307)
54 3fxz_A Serine/threonine-protei 100.0 1.3E-39 4.5E-44 358.3 25.6 250 741-1014 19-269 (297)
55 3soc_A Activin receptor type-2 100.0 2.1E-40 7E-45 369.4 18.8 267 741-1019 23-316 (322)
56 3bz5_A Internalin-J, INLJ; leu 100.0 1.4E-39 4.7E-44 379.0 25.9 364 97-623 30-393 (457)
57 3p86_A Serine/threonine-protei 100.0 4.8E-40 1.6E-44 363.8 20.2 261 737-1019 32-296 (309)
58 3fe3_A MAP/microtubule affinit 100.0 2.1E-39 7.1E-44 361.0 25.0 247 741-1014 14-264 (328)
59 3cbl_A C-FES, proto-oncogene t 100.0 1.1E-40 3.6E-45 380.0 12.5 258 740-1019 112-372 (377)
60 3kul_A Ephrin type-A receptor 100.0 3.4E-40 1.2E-44 367.9 16.3 257 741-1019 48-311 (325)
61 3zgw_A Maternal embryonic leuc 100.0 2.6E-39 8.9E-44 362.2 22.0 249 740-1014 8-260 (347)
62 4hcu_A Tyrosine-protein kinase 100.0 5E-40 1.7E-44 356.6 15.6 255 741-1019 9-264 (269)
63 2c30_A Serine/threonine-protei 100.0 9E-39 3.1E-43 355.7 25.8 261 730-1014 23-294 (321)
64 3vhe_A Vascular endothelial gr 100.0 1.3E-39 4.4E-44 369.4 19.1 271 732-1020 12-354 (359)
65 3bz5_A Internalin-J, INLJ; leu 100.0 5.5E-39 1.9E-43 373.9 24.8 311 85-486 42-353 (457)
66 3sxs_A Cytoplasmic tyrosine-pr 100.0 8.9E-40 3E-44 354.5 16.8 255 741-1019 7-262 (268)
67 3tt0_A Basic fibroblast growth 100.0 1.4E-39 4.7E-44 371.6 18.5 260 741-1019 68-350 (382)
68 3niz_A Rhodanese family protei 100.0 4.5E-39 1.5E-43 356.6 21.5 266 741-1018 20-306 (311)
69 3l9p_A Anaplastic lymphoma kin 100.0 4.7E-40 1.6E-44 373.0 13.8 260 741-1019 70-343 (367)
70 2ivs_A Proto-oncogene tyrosine 100.0 9.5E-40 3.3E-44 363.1 15.7 261 741-1020 22-310 (314)
71 1luf_A Muscle-specific tyrosin 100.0 9.3E-40 3.2E-44 368.1 15.7 264 738-1020 43-334 (343)
72 3qup_A Tyrosine-protein kinase 100.0 5.7E-40 2E-44 366.4 13.7 263 739-1020 20-297 (323)
73 3q4u_A Activin receptor type-1 100.0 7.8E-39 2.7E-43 353.4 22.4 262 741-1019 7-300 (301)
74 2qol_A Ephrin receptor; recept 100.0 8.4E-40 2.9E-44 371.4 15.0 257 741-1019 44-307 (373)
75 2izr_A Casein kinase I isoform 100.0 7.6E-39 2.6E-43 358.3 22.3 260 741-1019 8-279 (330)
76 3ugc_A Tyrosine-protein kinase 100.0 7.3E-39 2.5E-43 352.5 21.7 264 741-1019 9-289 (295)
77 4eqm_A Protein kinase; transfe 100.0 7E-39 2.4E-43 352.1 21.5 260 741-1020 10-274 (294)
78 1o6l_A RAC-beta serine/threoni 100.0 1.5E-38 5.1E-43 355.0 24.4 248 741-1014 4-260 (337)
79 1csn_A Casein kinase-1; phosph 100.0 1.5E-38 5.2E-43 350.5 24.1 261 741-1019 9-281 (298)
80 4euu_A Serine/threonine-protei 100.0 2.3E-38 7.9E-43 352.6 25.7 271 741-1018 8-306 (319)
81 2yab_A Death-associated protei 100.0 2.7E-39 9.1E-44 364.5 18.2 251 741-1014 11-272 (361)
82 3poz_A Epidermal growth factor 100.0 2E-39 6.7E-44 362.3 16.7 255 742-1019 15-276 (327)
83 3gen_A Tyrosine-protein kinase 100.0 1.4E-39 4.8E-44 355.9 14.7 256 741-1020 23-279 (283)
84 3tki_A Serine/threonine-protei 100.0 6.2E-39 2.1E-43 357.2 20.1 253 741-1014 6-261 (323)
85 1tki_A Titin; serine kinase, m 100.0 3.4E-39 1.2E-43 358.8 17.7 251 741-1014 4-257 (321)
86 1k9a_A Carboxyl-terminal SRC k 100.0 6.5E-39 2.2E-43 373.7 20.3 251 740-1019 191-443 (450)
87 4aw2_A Serine/threonine-protei 100.0 4.4E-39 1.5E-43 370.7 17.7 263 733-1014 65-338 (437)
88 1t46_A HOMO sapiens V-KIT hard 100.0 1.8E-38 6.1E-43 352.7 22.0 261 741-1019 22-305 (313)
89 2pvf_A Fibroblast growth facto 100.0 6.1E-39 2.1E-43 359.7 18.0 260 741-1019 34-316 (334)
90 4dc2_A Protein kinase C IOTA t 100.0 2.2E-38 7.5E-43 360.0 22.7 255 741-1014 51-318 (396)
91 2y0a_A Death-associated protei 100.0 7.6E-39 2.6E-43 357.1 18.4 250 742-1014 11-271 (326)
92 1qcf_A Haematopoetic cell kina 100.0 1.9E-39 6.6E-44 378.8 13.9 257 740-1020 186-443 (454)
93 1rjb_A FL cytokine receptor; k 100.0 1.7E-38 5.9E-43 357.8 21.2 263 740-1020 43-333 (344)
94 3c0i_A Peripheral plasma membr 100.0 1.7E-38 6E-43 358.0 21.1 254 742-1014 24-286 (351)
95 3lb7_A RAF proto-oncogene seri 100.0 1.9E-38 6.4E-43 350.8 20.9 259 741-1019 35-298 (307)
96 3kex_A Receptor tyrosine-prote 100.0 2.6E-39 9E-44 361.1 14.0 255 742-1019 13-274 (325)
97 3txo_A PKC-L, NPKC-ETA, protei 100.0 1.4E-38 4.7E-43 357.7 19.8 248 741-1014 22-280 (353)
98 1opk_A P150, C-ABL, proto-onco 100.0 4.2E-39 1.4E-43 379.4 16.2 257 741-1020 219-477 (495)
99 1o6v_A Internalin A; bacterial 100.0 1.1E-37 3.6E-42 366.1 28.1 347 106-594 43-389 (466)
100 3h4j_B AMPK kdaid, SNF1-like p 100.0 9.7E-39 3.3E-43 356.1 18.2 246 741-1014 8-258 (336)
101 1ob3_A PFPK5, cell division co 100.0 8.3E-39 2.8E-43 350.7 17.4 261 742-1014 2-280 (288)
102 4fr4_A YANK1, serine/threonine 100.0 1.7E-38 5.8E-43 359.7 20.4 249 742-1014 15-271 (384)
103 3dtc_A Mitogen-activated prote 100.0 3.4E-38 1.2E-42 342.6 21.6 251 741-1019 6-271 (271)
104 3soa_A Calcium/calmodulin-depe 100.0 1.3E-38 4.6E-43 368.2 19.5 252 741-1014 10-267 (444)
105 2bdw_A Hypothetical protein K1 100.0 1E-38 3.5E-43 360.9 18.1 251 741-1014 28-284 (362)
106 3a8x_A Protein kinase C IOTA t 100.0 6.7E-38 2.3E-42 351.5 24.6 254 742-1014 9-275 (345)
107 1kob_A Twitchin; kinase, intra 100.0 1.4E-38 4.7E-43 361.9 18.5 252 741-1014 50-304 (387)
108 1mp8_A Focal adhesion kinase 1 100.0 7.8E-39 2.7E-43 349.6 15.8 255 741-1019 14-274 (281)
109 1fot_A TPK1 delta, CAMP-depend 100.0 6.5E-38 2.2E-42 347.4 23.3 244 742-1014 6-258 (318)
110 4f0f_A Serine/threonine-protei 100.0 2.8E-38 9.6E-43 346.4 20.1 253 741-1019 18-287 (287)
111 3t9t_A Tyrosine-protein kinase 100.0 7.6E-39 2.6E-43 346.9 15.0 255 741-1019 7-262 (267)
112 4fvq_A Tyrosine-protein kinase 100.0 2.6E-38 9E-43 347.0 19.2 251 741-1020 7-274 (289)
113 1xjd_A Protein kinase C, theta 100.0 2.7E-38 9.2E-43 353.9 19.6 250 739-1014 14-269 (345)
114 3uc3_A Serine/threonine-protei 100.0 5.5E-38 1.9E-42 354.9 22.1 252 741-1014 19-274 (361)
115 3v8s_A RHO-associated protein 100.0 7.2E-39 2.5E-43 366.1 15.0 259 734-1014 61-329 (410)
116 3og7_A AKAP9-BRAF fusion prote 100.0 3E-38 1E-42 346.4 19.2 260 741-1020 23-287 (289)
117 2xir_A Vascular endothelial gr 100.0 3.8E-38 1.3E-42 350.5 20.2 270 733-1020 18-309 (316)
118 3op5_A Serine/threonine-protei 100.0 3.2E-38 1.1E-42 358.1 19.9 266 741-1019 34-327 (364)
119 3lzb_A Epidermal growth factor 100.0 1.3E-38 4.4E-43 355.5 16.2 256 741-1019 14-276 (327)
120 1fmk_A C-SRC, P60-SRC, tyrosin 100.0 6.1E-39 2.1E-43 374.1 14.0 257 740-1020 182-439 (452)
121 3o0g_A Cell division protein k 100.0 9.1E-38 3.1E-42 343.2 22.6 262 742-1014 2-282 (292)
122 4eut_A Serine/threonine-protei 100.0 4.5E-38 1.5E-42 360.8 21.0 273 741-1020 8-308 (396)
123 3brb_A Proto-oncogene tyrosine 100.0 8.1E-39 2.8E-43 355.4 14.3 264 737-1019 29-306 (313)
124 4e5w_A Tyrosine-protein kinase 100.0 5.9E-38 2E-42 346.6 21.2 263 742-1020 21-301 (302)
125 2zv2_A Calcium/calmodulin-depe 100.0 1.3E-37 4.5E-42 343.0 23.9 249 741-1014 12-292 (298)
126 2vd5_A DMPK protein; serine/th 100.0 1.5E-38 5.1E-43 363.7 16.9 262 733-1014 52-327 (412)
127 4hgt_A Casein kinase I isoform 100.0 1.2E-37 4.3E-42 342.8 23.6 262 740-1019 7-278 (296)
128 2id5_A Lingo-1, leucine rich r 100.0 8.3E-38 2.8E-42 368.8 23.4 329 57-387 3-334 (477)
129 3kfa_A Tyrosine-protein kinase 100.0 5.8E-39 2E-43 352.0 12.6 257 740-1019 11-269 (288)
130 2pmi_A Negative RE, cyclin-dep 100.0 2.5E-38 8.7E-43 351.7 17.7 265 741-1014 4-293 (317)
131 1p4o_A Insulin-like growth fac 100.0 6.9E-39 2.3E-43 357.5 13.1 266 736-1020 19-298 (322)
132 2i1m_A Macrophage colony-stimu 100.0 2.7E-38 9.2E-43 354.5 17.6 263 739-1019 43-324 (333)
133 3uzp_A CKI-delta, CKID, casein 100.0 2.8E-37 9.5E-42 340.1 25.5 261 741-1019 8-278 (296)
134 3a62_A Ribosomal protein S6 ki 100.0 1.7E-37 5.7E-42 346.4 23.7 248 741-1014 16-276 (327)
135 3dbq_A Dual specificity protei 100.0 1.1E-37 3.7E-42 350.7 22.4 251 741-1014 8-273 (343)
136 1o6v_A Internalin A; bacterial 100.0 2.6E-37 8.8E-42 362.9 26.4 347 155-620 45-391 (466)
137 1rdq_E PKA C-alpha, CAMP-depen 100.0 1.2E-37 4.2E-42 349.8 22.6 244 742-1014 41-293 (350)
138 3gni_B Strad alpha; kinase fol 100.0 9.4E-38 3.2E-42 357.8 21.8 267 741-1014 24-333 (389)
139 2w4o_A Calcium/calmodulin-depe 100.0 4.3E-38 1.5E-42 354.3 18.5 250 741-1014 52-305 (349)
140 1qpc_A LCK kinase; alpha beta 100.0 1.1E-38 3.9E-43 347.9 13.1 256 740-1019 11-267 (279)
141 3lxl_A Tyrosine-protein kinase 100.0 5.9E-38 2E-42 350.7 19.1 263 742-1019 23-301 (327)
142 3cc6_A Protein tyrosine kinase 100.0 4.9E-38 1.7E-42 343.3 17.8 255 741-1019 11-271 (281)
143 2x4f_A Myosin light chain kina 100.0 2.9E-38 9.9E-43 358.5 16.6 249 747-1017 94-347 (373)
144 3qd2_B Eukaryotic translation 100.0 8.9E-38 3E-42 350.1 20.4 251 742-1014 6-325 (332)
145 1u59_A Tyrosine-protein kinase 100.0 4.4E-38 1.5E-42 344.7 17.4 255 742-1019 9-270 (287)
146 2buj_A Serine/threonine-protei 100.0 4.6E-38 1.6E-42 350.0 17.7 262 741-1019 28-304 (317)
147 2eue_A Carbon catabolite derep 100.0 2.3E-37 7.7E-42 336.9 22.7 248 742-1017 13-267 (275)
148 2wqm_A Serine/threonine-protei 100.0 3.1E-37 1.1E-41 342.1 24.3 261 741-1019 31-295 (310)
149 3kmu_A ILK, integrin-linked ki 100.0 1.5E-37 5.2E-42 337.4 21.2 250 742-1019 10-268 (271)
150 2acx_A G protein-coupled recep 100.0 9.4E-38 3.2E-42 367.5 21.0 253 741-1014 183-444 (576)
151 1xbb_A Tyrosine-protein kinase 100.0 1.6E-38 5.3E-43 349.1 13.4 256 740-1019 14-277 (291)
152 1nxk_A MAP kinase-activated pr 100.0 3.6E-37 1.2E-41 352.9 25.2 251 742-1014 61-321 (400)
153 3c1x_A Hepatocyte growth facto 100.0 2.1E-38 7.1E-43 359.4 14.7 255 743-1019 90-353 (373)
154 4agu_A Cyclin-dependent kinase 100.0 6.1E-38 2.1E-42 348.0 18.0 261 742-1014 3-284 (311)
155 2eva_A TAK1 kinase - TAB1 chim 100.0 1.5E-37 5E-42 343.9 21.0 253 742-1019 8-261 (307)
156 1mqb_A Ephrin type-A receptor 100.0 5.1E-38 1.7E-42 351.7 17.5 257 741-1019 43-307 (333)
157 3kn6_A Ribosomal protein S6 ki 100.0 1.1E-37 3.9E-42 347.3 20.2 249 747-1014 16-270 (325)
158 3lxp_A Non-receptor tyrosine-p 100.0 1.9E-38 6.6E-43 352.9 13.9 258 744-1019 33-308 (318)
159 3g33_A Cell division protein k 100.0 4.8E-38 1.7E-42 348.2 17.0 262 741-1014 8-296 (308)
160 3f66_A Hepatocyte growth facto 100.0 5.9E-38 2E-42 345.9 17.6 257 741-1019 24-289 (298)
161 3kk8_A Calcium/calmodulin depe 100.0 1.1E-37 3.9E-42 341.0 19.6 251 741-1014 5-261 (284)
162 2i0e_A Protein kinase C-beta I 100.0 1.8E-37 6.3E-42 348.3 21.7 248 741-1014 19-276 (353)
163 3f3z_A Calcium/calmodulin-depe 100.0 5.6E-38 1.9E-42 342.1 16.9 253 741-1017 8-266 (277)
164 2zmd_A Dual specificity protei 100.0 2.8E-37 9.7E-42 352.8 23.5 250 742-1014 56-320 (390)
165 3p1a_A MYT1 kinase, membrane-a 100.0 9.1E-38 3.1E-42 346.2 18.8 244 742-1014 57-304 (311)
166 3c4z_A Rhodopsin kinase; Ser/T 100.0 2E-37 6.8E-42 364.3 22.8 256 741-1014 184-448 (543)
167 3hko_A Calcium/calmodulin-depe 100.0 3.2E-38 1.1E-42 355.8 15.2 265 738-1018 22-336 (345)
168 3ork_A Serine/threonine protei 100.0 1.4E-38 4.7E-43 353.0 11.9 254 741-1014 11-273 (311)
169 3fdn_A Serine/threonine-protei 100.0 2.7E-37 9.4E-42 337.0 22.0 246 741-1014 8-257 (279)
170 2y94_A 5'-AMP-activated protei 100.0 2.5E-37 8.7E-42 359.6 23.0 246 742-1014 16-266 (476)
171 3is5_A Calcium-dependent prote 100.0 1.9E-37 6.6E-42 339.2 20.8 252 742-1014 22-278 (285)
172 3llt_A Serine/threonine kinase 100.0 3.7E-38 1.3E-42 357.4 15.0 266 734-1014 27-355 (360)
173 2a2a_A Death-associated protei 100.0 5.8E-37 2E-41 341.6 24.4 250 742-1014 12-272 (321)
174 2yfx_A Tyrosine-protein kinase 100.0 4.7E-38 1.6E-42 351.4 15.6 260 741-1019 29-302 (327)
175 3mdy_A Bone morphogenetic prot 100.0 5E-37 1.7E-41 344.8 23.9 266 739-1019 34-329 (337)
176 2h34_A Serine/threonine-protei 100.0 5.2E-37 1.8E-41 339.9 23.0 258 741-1020 33-295 (309)
177 3pls_A Macrophage-stimulating 100.0 1.1E-37 3.9E-42 343.6 17.6 256 743-1019 22-285 (298)
178 2id5_A Lingo-1, leucine rich r 100.0 1.9E-37 6.4E-42 365.7 20.6 302 206-594 33-334 (477)
179 2h8h_A Proto-oncogene tyrosine 100.0 2.1E-38 7E-43 377.0 12.4 257 740-1020 265-522 (535)
180 2r5t_A Serine/threonine-protei 100.0 1.7E-37 5.9E-42 351.0 19.3 246 741-1012 37-287 (373)
181 2ac3_A MAP kinase-interacting 100.0 8.5E-38 2.9E-42 347.7 16.6 259 742-1014 12-295 (316)
182 2yex_A Serine/threonine-protei 100.0 4E-37 1.4E-41 335.1 21.4 252 742-1014 7-261 (276)
183 2qr7_A Ribosomal protein S6 ki 100.0 8.1E-38 2.8E-42 350.3 16.1 251 741-1014 21-277 (342)
184 2v62_A Serine/threonine-protei 100.0 1.9E-37 6.5E-42 349.0 19.2 265 741-1019 36-326 (345)
185 3oz6_A Mitogen-activated prote 100.0 4.3E-37 1.5E-41 352.0 22.5 201 741-950 8-234 (388)
186 1b6c_B TGF-B superfamily recep 100.0 8E-37 2.7E-41 343.9 24.0 265 737-1019 37-334 (342)
187 3ttj_A Mitogen-activated prote 100.0 2.3E-37 7.7E-42 361.0 20.0 258 741-1014 61-355 (464)
188 3sv0_A Casein kinase I-like; t 100.0 9.9E-37 3.4E-41 355.3 25.2 261 741-1019 6-276 (483)
189 3e7e_A HBUB1, BUB1A, mitotic c 100.0 3.4E-37 1.2E-41 349.9 20.7 253 740-1019 63-337 (365)
190 2jii_A Serine/threonine-protei 100.0 1.4E-37 4.9E-42 351.2 17.4 262 741-1019 41-334 (352)
191 2ozo_A Tyrosine-protein kinase 100.0 9.8E-38 3.4E-42 376.3 17.0 254 743-1019 336-596 (613)
192 2w5a_A Serine/threonine-protei 100.0 7.2E-38 2.5E-42 341.6 14.1 255 741-1016 5-269 (279)
193 3gxj_A TGF-beta receptor type- 100.0 8.2E-39 2.8E-43 353.6 6.6 261 741-1020 2-296 (303)
194 1fvr_A Tyrosine-protein kinase 100.0 4.5E-38 1.5E-42 351.6 12.4 256 742-1019 25-298 (327)
195 2a19_B Interferon-induced, dou 100.0 4.8E-37 1.6E-41 336.0 20.3 246 741-1019 10-272 (284)
196 1u5q_A Serine/threonine protei 100.0 6.7E-37 2.3E-41 344.0 22.0 245 742-1014 54-305 (348)
197 4ejn_A RAC-alpha serine/threon 100.0 2.2E-37 7.5E-42 361.0 18.5 248 741-1014 147-404 (446)
198 3bhy_A Death-associated protei 100.0 2.1E-37 7E-42 338.8 17.1 254 742-1018 5-271 (283)
199 2w1i_A JAK2; chromosomal rearr 100.0 5.9E-37 2E-41 342.3 21.0 264 741-1019 40-320 (326)
200 2jam_A Calcium/calmodulin-depe 100.0 2.1E-37 7.2E-42 342.4 17.0 250 741-1014 8-261 (304)
201 1byg_A CSK, protein (C-termina 100.0 5.5E-38 1.9E-42 342.3 12.1 250 741-1019 20-271 (278)
202 3mtl_A Cell division protein k 100.0 4.9E-38 1.7E-42 350.5 11.8 261 742-1014 2-281 (324)
203 3cok_A Serine/threonine-protei 100.0 3.1E-37 1.1E-41 336.4 17.5 249 741-1014 10-262 (278)
204 3g2f_A Bone morphogenetic prot 100.0 2.7E-37 9.2E-42 346.9 17.5 268 741-1020 12-317 (336)
205 2rku_A Serine/threonine-protei 100.0 1.5E-36 5E-41 333.9 22.9 248 741-1014 14-265 (294)
206 3eqc_A Dual specificity mitoge 100.0 4.7E-37 1.6E-41 348.3 19.5 199 741-950 32-233 (360)
207 3dls_A PAS domain-containing s 100.0 1.5E-37 5.2E-42 347.7 15.2 241 741-1014 23-274 (335)
208 3i6u_A CDS1, serine/threonine- 100.0 4E-37 1.4E-41 355.0 19.1 252 740-1014 133-399 (419)
209 2y7j_A Phosphorylase B kinase 100.0 5.1E-37 1.7E-41 347.8 19.4 258 734-1014 86-359 (365)
210 4aaa_A Cyclin-dependent kinase 100.0 1.7E-37 5.8E-42 347.5 15.1 262 741-1014 24-306 (331)
211 3gbz_A Kinase, CMGC CDK; ssgci 100.0 1.3E-37 4.4E-42 348.0 14.0 262 740-1014 32-318 (329)
212 1vzo_A Ribosomal protein S6 ki 100.0 3.1E-37 1.1E-41 348.3 17.2 252 742-1014 54-321 (355)
213 2owb_A Serine/threonine-protei 100.0 1.4E-36 4.6E-41 340.6 22.3 248 741-1014 40-291 (335)
214 3n9x_A Phosphotransferase; mal 100.0 2.1E-36 7.3E-41 350.7 24.4 200 741-948 25-253 (432)
215 4fl3_A Tyrosine-protein kinase 100.0 1.9E-37 6.7E-42 374.5 16.2 248 748-1019 375-629 (635)
216 3ll6_A Cyclin G-associated kin 100.0 3.4E-37 1.2E-41 346.1 17.0 255 741-1019 27-306 (337)
217 1cm8_A Phosphorylated MAP kina 100.0 4.2E-37 1.4E-41 348.5 17.7 256 741-1014 24-307 (367)
218 3rp9_A Mitogen-activated prote 100.0 7.4E-37 2.5E-41 358.1 20.3 195 741-943 52-280 (458)
219 2vgo_A Serine/threonine-protei 100.0 1.6E-36 5.3E-41 331.9 21.4 245 742-1014 14-262 (284)
220 3eb0_A Putative uncharacterize 100.0 2.3E-37 7.8E-42 353.5 15.4 262 739-1014 4-321 (383)
221 1ua2_A CAK, cell division prot 100.0 4.6E-37 1.6E-41 346.0 17.6 263 740-1014 8-291 (346)
222 3a7i_A MST3 kinase, serine/thr 100.0 7.1E-37 2.4E-41 338.0 18.8 248 741-1014 21-270 (303)
223 1t4h_A Serine/threonine-protei 100.0 2.1E-36 7.1E-41 332.0 22.1 247 742-1014 26-282 (290)
224 2h6d_A 5'-AMP-activated protei 100.0 2.5E-36 8.6E-41 328.8 22.6 247 741-1014 10-261 (276)
225 1x8b_A WEE1HU, WEE1-like prote 100.0 1E-36 3.4E-41 334.2 19.5 246 741-1014 10-279 (289)
226 2clq_A Mitogen-activated prote 100.0 3.5E-36 1.2E-40 331.1 23.6 252 743-1014 23-278 (295)
227 3byv_A Rhoptry kinase; malaria 100.0 1E-37 3.4E-42 355.7 11.0 247 741-1018 72-365 (377)
228 3mwu_A Calmodulin-domain prote 100.0 5.2E-37 1.8E-41 361.9 17.5 249 742-1014 22-276 (486)
229 3mi9_A Cell division protein k 100.0 5.4E-37 1.8E-41 346.5 16.8 263 742-1014 17-311 (351)
230 3pg1_A Mitogen-activated prote 100.0 4.3E-37 1.5E-41 348.9 16.0 269 733-1014 13-316 (362)
231 3fme_A Dual specificity mitoge 100.0 1.1E-36 3.7E-41 334.3 18.7 254 741-1014 6-266 (290)
232 3lm5_A Serine/threonine-protei 100.0 4.2E-37 1.4E-41 343.4 15.5 255 739-1014 25-287 (327)
233 2j7t_A Serine/threonine-protei 100.0 2E-36 6.8E-41 334.3 19.9 252 741-1014 18-275 (302)
234 3lij_A Calcium/calmodulin depe 100.0 7.2E-37 2.5E-41 361.3 17.4 249 742-1014 37-291 (494)
235 2wtk_C Serine/threonine-protei 100.0 1.2E-35 4.1E-40 328.6 26.0 251 741-1014 4-263 (305)
236 3q5i_A Protein kinase; CDPK, m 100.0 1.2E-36 3.9E-41 360.5 19.0 250 741-1014 35-301 (504)
237 3an0_A Dual specificity mitoge 100.0 1.8E-36 6.2E-41 340.6 19.5 255 740-1014 49-310 (340)
238 3q60_A ROP5B; pseudokinase, tr 100.0 6.2E-37 2.1E-41 348.5 15.5 254 741-1014 61-352 (371)
239 3nyv_A Calmodulin-domain prote 100.0 3.8E-37 1.3E-41 363.2 13.8 249 742-1014 26-281 (484)
240 3nsz_A CK II alpha, casein kin 100.0 4.1E-36 1.4E-40 336.3 21.5 261 741-1019 35-326 (330)
241 1u46_A ACK-1, activated CDC42 100.0 2.1E-36 7.1E-41 332.2 18.5 257 741-1019 17-282 (291)
242 4e7w_A Glycogen synthase kinas 100.0 1.2E-36 4.1E-41 348.3 17.2 259 742-1014 40-321 (394)
243 2ycf_A Serine/threonine-protei 100.0 2.3E-36 7.8E-41 337.0 18.8 251 741-1014 9-274 (322)
244 2xrw_A Mitogen-activated prote 100.0 7.9E-36 2.7E-40 339.1 23.6 258 741-1014 24-318 (371)
245 2r3i_A Cell division protein k 100.0 2.1E-36 7.1E-41 333.6 18.1 266 742-1018 3-289 (299)
246 3qyz_A Mitogen-activated prote 100.0 1.8E-36 6.3E-41 343.6 17.8 262 741-1014 26-313 (364)
247 1phk_A Phosphorylase kinase; g 100.0 2.3E-36 7.8E-41 333.1 18.1 251 741-1014 16-283 (298)
248 3kvw_A DYRK2, dual specificity 100.0 2.9E-36 1E-40 348.7 19.7 198 741-950 96-302 (429)
249 1j1b_A Glycogen synthase kinas 100.0 1.8E-36 6.3E-41 349.6 18.0 260 742-1014 54-336 (420)
250 3com_A Serine/threonine-protei 100.0 1.1E-35 3.8E-40 330.3 23.6 251 740-1014 27-278 (314)
251 2vwi_A Serine/threonine-protei 100.0 7.2E-37 2.5E-41 338.0 13.9 264 739-1014 12-287 (303)
252 2fst_X Mitogen-activated prote 100.0 6E-37 2.1E-41 346.8 13.4 257 741-1014 28-311 (367)
253 2x7f_A TRAF2 and NCK-interacti 100.0 2.1E-36 7.3E-41 338.0 17.0 257 735-1014 17-286 (326)
254 3pfq_A PKC-B, PKC-beta, protei 100.0 5.6E-36 1.9E-40 364.3 21.9 248 741-1014 340-597 (674)
255 3e3p_A Protein kinase, putativ 100.0 1.5E-36 5.2E-41 344.2 15.7 268 736-1014 17-314 (360)
256 3cek_A Dual specificity protei 100.0 1.2E-35 4.3E-40 329.6 22.7 252 740-1014 26-292 (313)
257 2pml_X PFPK7, Ser/Thr protein 100.0 4.1E-36 1.4E-40 338.9 19.0 259 741-1014 30-322 (348)
258 1z57_A Dual specificity protei 100.0 5.3E-36 1.8E-40 336.7 19.8 259 741-1014 13-328 (339)
259 1wak_A Serine/threonine-protei 100.0 9.5E-36 3.2E-40 342.5 22.3 263 741-1014 36-391 (397)
260 1blx_A Cyclin-dependent kinase 100.0 1.7E-36 5.7E-41 338.9 15.1 264 739-1014 8-296 (326)
261 2j0j_A Focal adhesion kinase 1 100.0 2.1E-36 7.1E-41 367.0 16.4 257 740-1020 388-650 (656)
262 3o6n_A APL1; leucine-rich repe 100.0 1E-35 3.6E-40 341.1 21.1 311 107-487 43-354 (390)
263 3oja_B Anopheles plasmodium-re 100.0 7.1E-36 2.4E-40 361.4 20.5 334 203-642 49-383 (597)
264 3rgf_A Cyclin-dependent kinase 100.0 9.9E-36 3.4E-40 342.7 20.6 266 743-1014 21-333 (405)
265 3o6n_A APL1; leucine-rich repe 100.0 1.1E-35 3.8E-40 340.8 20.9 331 205-641 45-376 (390)
266 3fhr_A MAP kinase-activated pr 100.0 1.4E-35 4.9E-40 332.1 20.6 255 741-1017 27-292 (336)
267 4exu_A Mitogen-activated prote 100.0 4.8E-36 1.7E-40 340.9 16.6 255 741-1014 41-323 (371)
268 2vx3_A Dual specificity tyrosi 100.0 1.7E-35 5.8E-40 337.9 21.0 200 741-950 53-261 (382)
269 3oja_B Anopheles plasmodium-re 100.0 1.9E-35 6.6E-40 357.6 22.7 268 108-390 50-318 (597)
270 2i6l_A Mitogen-activated prote 100.0 1.3E-35 4.4E-40 330.6 19.4 265 741-1017 10-310 (320)
271 2y4i_B KSR2, HKSR2, kinase sup 100.0 3.6E-36 1.2E-40 335.1 14.6 258 738-1019 29-300 (319)
272 2wei_A Calmodulin-domain prote 100.0 3.1E-35 1.1E-39 322.1 21.3 254 741-1018 21-282 (287)
273 2b9h_A MAP kinase FUS3, mitoge 100.0 3.5E-35 1.2E-39 332.0 22.4 262 741-1014 10-305 (353)
274 3coi_A Mitogen-activated prote 100.0 1.2E-35 4.2E-40 335.6 17.8 255 741-1014 23-305 (353)
275 1zy4_A Serine/threonine-protei 100.0 4.6E-35 1.6E-39 323.4 22.0 252 741-1014 5-283 (303)
276 2eu9_A Dual specificity protei 100.0 4.7E-35 1.6E-39 331.2 19.9 259 741-1014 18-333 (355)
277 1q8y_A SR protein kinase; tran 100.0 5.6E-35 1.9E-39 333.1 20.3 263 741-1014 18-333 (373)
278 3aln_A Dual specificity mitoge 100.0 3.2E-35 1.1E-39 328.6 17.6 257 741-1014 21-285 (327)
279 2rio_A Serine/threonine-protei 100.0 5E-35 1.7E-39 339.2 19.4 254 742-1014 15-295 (434)
280 2iwi_A Serine/threonine-protei 100.0 5.2E-35 1.8E-39 324.5 18.7 242 739-1014 28-283 (312)
281 1ogq_A PGIP-2, polygalacturona 100.0 2E-35 6.9E-40 327.1 15.0 257 302-647 51-312 (313)
282 3a99_A Proto-oncogene serine/t 100.0 2.5E-35 8.5E-40 328.0 15.1 242 739-1014 40-293 (320)
283 2dyl_A Dual specificity mitoge 100.0 2.8E-34 9.5E-39 319.6 21.4 251 741-1014 24-283 (318)
284 3p23_A Serine/threonine-protei 100.0 2.1E-34 7.2E-39 332.7 19.8 250 741-1014 23-283 (432)
285 3qa8_A MGC80376 protein; kinas 100.0 4.5E-35 1.5E-39 347.6 14.4 260 742-1013 14-296 (676)
286 4fcg_A Uncharacterized protein 100.0 7E-35 2.4E-39 324.7 13.9 289 27-338 20-314 (328)
287 4fmz_A Internalin; leucine ric 100.0 1.4E-33 4.9E-38 318.0 24.5 307 105-485 40-346 (347)
288 2ft3_A Biglycan; proteoglycan, 100.0 2.1E-33 7.2E-38 314.3 24.7 302 50-384 20-331 (332)
289 4fmz_A Internalin; leucine ric 100.0 2.8E-33 9.7E-38 315.5 25.1 307 225-617 40-346 (347)
290 1xku_A Decorin; proteoglycan, 100.0 5.7E-33 1.9E-37 310.6 26.0 302 50-384 18-330 (330)
291 3uqc_A Probable conserved tran 100.0 8.8E-34 3E-38 309.5 18.5 229 742-1019 31-263 (286)
292 2pzi_A Probable serine/threoni 100.0 7.1E-34 2.4E-38 348.6 17.2 237 742-1018 80-325 (681)
293 3m2w_A MAP kinase-activated pr 100.0 5.6E-33 1.9E-37 306.0 19.6 228 742-1014 17-256 (299)
294 2vuw_A Serine/threonine-protei 100.0 1.2E-33 4.1E-38 316.9 11.9 241 741-1013 19-329 (336)
295 3dzo_A Rhoptry kinase domain; 100.0 1.5E-33 5E-38 324.6 12.6 243 741-1014 77-363 (413)
296 2ft3_A Biglycan; proteoglycan, 100.0 6.9E-32 2.4E-36 301.9 23.5 267 182-483 55-331 (332)
297 1z7x_W Ribonuclease inhibitor; 100.0 4.1E-36 1.4E-40 352.9 -12.2 231 157-387 4-270 (461)
298 1xku_A Decorin; proteoglycan, 100.0 2.6E-31 8.8E-36 297.1 25.7 267 108-385 30-305 (330)
299 1z7x_W Ribonuclease inhibitor; 100.0 8.7E-35 3E-39 341.6 -8.3 370 86-501 4-435 (461)
300 2z66_A Variable lymphocyte rec 100.0 2.1E-31 7.2E-36 294.5 9.7 289 58-372 2-297 (306)
301 2z80_A TOLL-like receptor 2, v 100.0 7.9E-31 2.7E-35 296.0 13.1 286 58-366 25-318 (353)
302 3ogk_B Coronatine-insensitive 100.0 3.8E-33 1.3E-37 338.6 -14.0 430 100-614 64-548 (592)
303 3zyj_A Leucine-rich repeat-con 100.0 4E-29 1.4E-33 290.9 20.1 254 57-338 35-292 (440)
304 3zyi_A Leucine-rich repeat-con 100.0 3.8E-29 1.3E-33 292.2 19.8 254 57-338 46-303 (452)
305 2z80_A TOLL-like receptor 2, v 100.0 5.1E-30 1.7E-34 289.4 11.9 278 160-489 35-318 (353)
306 2z66_A Variable lymphocyte rec 100.0 3.4E-29 1.2E-33 276.7 17.5 221 160-385 11-235 (306)
307 3g06_A SSPH2 (leucine-rich rep 100.0 3.3E-28 1.1E-32 291.0 20.6 289 53-389 12-300 (622)
308 1ozn_A Reticulon 4 receptor; N 100.0 2.5E-28 8.5E-33 266.8 16.9 225 159-387 14-239 (285)
309 1wwl_A Monocyte differentiatio 100.0 2.7E-29 9.4E-34 277.9 9.3 165 201-389 39-217 (312)
310 4fcg_A Uncharacterized protein 100.0 4.2E-28 1.4E-32 269.9 18.6 238 132-389 80-317 (328)
311 1ozn_A Reticulon 4 receptor; N 100.0 1.9E-28 6.6E-33 267.7 14.9 262 57-321 2-268 (285)
312 3zyi_A Leucine-rich repeat-con 100.0 1.4E-27 4.9E-32 278.7 22.2 248 157-485 55-303 (452)
313 1wwl_A Monocyte differentiatio 100.0 3.3E-30 1.1E-34 285.4 -0.6 202 180-387 94-310 (312)
314 3zyj_A Leucine-rich repeat-con 100.0 1.5E-27 5.3E-32 277.5 21.9 248 157-485 44-292 (440)
315 3o53_A Protein LRIM1, AGAP0063 100.0 3.7E-29 1.3E-33 277.6 7.4 269 254-623 11-282 (317)
316 3o53_A Protein LRIM1, AGAP0063 100.0 2.6E-29 9E-34 278.8 5.3 268 207-599 12-282 (317)
317 3ogk_B Coronatine-insensitive 99.9 1.5E-30 5E-35 315.9 -6.2 401 154-619 71-528 (592)
318 3g06_A SSPH2 (leucine-rich rep 99.9 9.5E-27 3.2E-31 278.4 24.5 137 229-388 40-176 (622)
319 3oja_A Leucine-rich immune mol 99.9 2.4E-27 8.1E-32 278.4 12.4 236 300-612 33-270 (487)
320 2o6q_A Variable lymphocyte rec 99.9 2.6E-26 9E-31 248.4 18.3 217 60-291 2-219 (270)
321 4azs_A Methyltransferase WBDD; 99.9 1.8E-27 6.1E-32 283.1 4.2 184 750-946 242-437 (569)
322 3oja_A Leucine-rich immune mol 99.9 9.3E-27 3.2E-31 273.3 8.2 235 228-503 33-269 (487)
323 2z62_A TOLL-like receptor 4, v 99.9 4.2E-25 1.4E-29 239.9 18.8 223 66-291 10-238 (276)
324 2p1m_B Transport inhibitor res 99.9 3.1E-28 1.1E-32 295.5 -11.8 235 128-383 61-324 (594)
325 2z62_A TOLL-like receptor 4, v 99.9 1.3E-24 4.5E-29 236.0 17.3 211 109-365 28-240 (276)
326 3rfs_A Internalin B, repeat mo 99.9 1.6E-24 5.4E-29 234.6 15.3 231 204-498 18-248 (272)
327 2o6q_A Variable lymphocyte rec 99.9 5.7E-24 2E-28 230.0 19.2 202 183-387 18-219 (270)
328 3rfs_A Internalin B, repeat mo 99.9 1.7E-24 5.7E-29 234.4 12.9 212 201-474 37-248 (272)
329 2p1m_B Transport inhibitor res 99.9 1.8E-27 6.2E-32 288.7 -13.2 373 203-617 103-519 (594)
330 1p9a_G Platelet glycoprotein I 99.9 1.1E-23 3.7E-28 229.7 17.1 177 207-387 33-209 (290)
331 1p9a_G Platelet glycoprotein I 99.9 1.6E-23 5.6E-28 228.4 18.3 202 154-363 8-209 (290)
332 3en9_A Glycoprotease, O-sialog 99.9 1.2E-24 4E-29 257.4 7.5 186 745-948 339-539 (540)
333 3m19_A Variable lymphocyte rec 99.9 1.8E-23 6.2E-28 223.4 15.2 190 61-267 3-193 (251)
334 2ast_B S-phase kinase-associat 99.9 2.4E-25 8.1E-30 249.5 -1.9 267 60-371 34-315 (336)
335 3goz_A Leucine-rich repeat-con 99.9 7.9E-25 2.7E-29 247.5 2.1 251 90-340 3-299 (362)
336 2xwt_C Thyrotropin receptor; s 99.9 2.5E-23 8.7E-28 220.6 13.4 220 57-311 4-236 (239)
337 4glp_A Monocyte differentiatio 99.9 2.8E-23 9.7E-28 229.4 13.7 225 109-339 64-308 (310)
338 2xwt_C Thyrotropin receptor; s 99.9 3.9E-23 1.3E-27 219.2 13.6 196 182-383 32-236 (239)
339 2ca6_A RAN GTPase-activating p 99.9 5.1E-25 1.7E-29 251.7 -1.1 258 293-621 24-320 (386)
340 3goz_A Leucine-rich repeat-con 99.9 5.1E-25 1.7E-29 249.1 -1.2 47 443-489 248-301 (362)
341 4glp_A Monocyte differentiatio 99.9 2.2E-23 7.5E-28 230.3 11.6 202 181-387 91-308 (310)
342 4ay9_X Follicle-stimulating ho 99.9 8E-23 2.7E-27 229.8 15.2 216 61-279 7-228 (350)
343 2o6s_A Variable lymphocyte rec 99.9 2.1E-22 7.3E-27 208.5 16.4 186 58-252 2-188 (208)
344 2ca6_A RAN GTPase-activating p 99.9 8.8E-25 3E-29 249.7 -4.1 192 250-488 91-319 (386)
345 3m19_A Variable lymphocyte rec 99.9 7.9E-22 2.7E-26 210.6 17.3 178 183-387 16-193 (251)
346 4ay9_X Follicle-stimulating ho 99.9 1.9E-22 6.6E-27 226.7 11.8 201 113-317 13-218 (350)
347 1h6u_A Internalin H; cell adhe 99.9 5.2E-22 1.8E-26 218.7 14.9 214 204-486 18-231 (308)
348 2ast_B S-phase kinase-associat 99.9 1.9E-23 6.3E-28 234.0 2.4 250 255-622 49-311 (336)
349 1h6u_A Internalin H; cell adhe 99.9 1.1E-21 3.6E-26 216.2 13.9 194 105-338 37-230 (308)
350 3cvr_A Invasion plasmid antige 99.9 2.1E-22 7.2E-27 237.7 7.7 203 59-301 39-254 (571)
351 1zar_A RIO2 kinase; serine kin 99.8 1.4E-21 4.7E-26 211.7 11.4 154 733-920 81-252 (282)
352 3cvr_A Invasion plasmid antige 99.8 1.4E-20 4.8E-25 222.2 16.9 197 278-606 60-256 (571)
353 2o6s_A Variable lymphocyte rec 99.8 1.3E-20 4.5E-25 195.0 14.6 150 233-385 11-160 (208)
354 3e6j_A Variable lymphocyte rec 99.8 1.3E-19 4.4E-24 190.3 16.8 159 57-218 13-172 (229)
355 2v9t_B SLIT homolog 2 protein 99.8 3E-19 1E-23 186.1 15.5 160 57-218 5-165 (220)
356 1m9s_A Internalin B; cell inva 99.8 2E-19 7E-24 214.8 15.4 172 203-388 19-190 (605)
357 4b8c_D Glucose-repressible alc 99.8 1.1E-20 3.7E-25 231.8 4.1 271 31-363 129-405 (727)
358 1m9s_A Internalin B; cell inva 99.8 3.5E-19 1.2E-23 212.9 14.5 174 106-317 40-213 (605)
359 1h6t_A Internalin B; cell adhe 99.8 2E-19 7E-24 196.1 11.2 168 204-385 23-190 (291)
360 1h6t_A Internalin B; cell adhe 99.8 4.2E-19 1.4E-23 193.6 12.1 172 106-315 43-214 (291)
361 2v9t_B SLIT homolog 2 protein 99.8 1.1E-18 3.7E-23 181.9 14.3 153 232-387 14-166 (220)
362 2v70_A SLIT-2, SLIT homolog 2 99.8 1.3E-18 4.4E-23 181.3 14.3 161 57-219 5-167 (220)
363 2xot_A Amphoterin-induced prot 99.8 8.5E-19 2.9E-23 197.7 13.4 184 57-266 12-202 (361)
364 2v70_A SLIT-2, SLIT homolog 2 99.8 1.6E-18 5.4E-23 180.6 13.9 153 232-387 14-167 (220)
365 1dce_A Protein (RAB geranylger 99.8 1.3E-20 4.4E-25 224.0 -3.3 203 202-489 346-550 (567)
366 2xot_A Amphoterin-induced prot 99.8 4.7E-19 1.6E-23 199.8 9.2 157 231-387 41-203 (361)
367 1dce_A Protein (RAB geranylger 99.8 2.8E-20 9.5E-25 221.1 -2.2 174 178-385 346-520 (567)
368 3e6j_A Variable lymphocyte rec 99.8 6.1E-18 2.1E-22 177.4 15.6 154 231-388 21-174 (229)
369 1xeu_A Internalin C; cellular 99.7 4.2E-18 1.4E-22 182.6 10.4 167 87-268 21-187 (263)
370 1xeu_A Internalin C; cellular 99.7 3.5E-18 1.2E-22 183.3 9.4 172 203-389 17-188 (263)
371 1zth_A RIO1 serine protein kin 99.7 6.6E-18 2.3E-22 180.5 11.5 144 736-895 41-219 (258)
372 4ezg_A Putative uncharacterize 99.7 1.1E-17 3.9E-22 171.1 11.5 156 419-618 39-195 (197)
373 4b8c_D Glucose-repressible alc 99.7 1.4E-18 4.9E-23 213.0 5.6 231 109-386 173-404 (727)
374 3sb4_A Hypothetical leucine ri 99.7 1.9E-18 6.5E-23 192.3 5.3 262 108-379 24-327 (329)
375 4ezg_A Putative uncharacterize 99.7 2.5E-17 8.6E-22 168.5 11.1 154 225-386 40-194 (197)
376 1w8a_A SLIT protein; signaling 99.7 1.6E-17 5.6E-22 169.0 8.3 132 427-597 11-143 (192)
377 3sb4_A Hypothetical leucine ri 99.7 1.2E-16 4.3E-21 177.6 14.1 213 252-498 48-275 (329)
378 1w8a_A SLIT protein; signaling 99.7 2.4E-16 8.1E-21 160.3 12.5 140 57-222 2-143 (192)
379 2o6r_A Variable lymphocyte rec 99.7 6.7E-16 2.3E-20 154.9 13.7 139 58-222 2-141 (177)
380 2ell_A Acidic leucine-rich nuc 99.6 6.2E-16 2.1E-20 153.7 9.8 135 448-620 24-163 (168)
381 2wfh_A SLIT homolog 2 protein 99.6 2E-15 6.7E-20 153.5 13.4 136 57-219 4-140 (193)
382 2je0_A Acidic leucine-rich nuc 99.6 5.2E-16 1.8E-20 150.9 7.9 128 448-613 17-149 (149)
383 2ell_A Acidic leucine-rich nuc 99.6 4.9E-16 1.7E-20 154.5 7.3 136 253-390 24-164 (168)
384 4gyi_A RIO2 kinase; protein ki 99.6 2.1E-15 7.2E-20 166.6 12.7 150 734-898 87-268 (397)
385 4fdw_A Leucine rich hypothetic 99.6 9.7E-15 3.3E-19 165.8 18.5 267 108-387 112-384 (401)
386 4fdw_A Leucine rich hypothetic 99.6 1E-14 3.6E-19 165.5 18.3 254 96-362 123-383 (401)
387 2wfh_A SLIT homolog 2 protein 99.6 5.5E-15 1.9E-19 150.2 12.6 126 233-386 14-139 (193)
388 2je0_A Acidic leucine-rich nuc 99.6 3.9E-15 1.3E-19 144.6 10.4 129 301-481 17-149 (149)
389 2o6r_A Variable lymphocyte rec 99.6 1.8E-14 6.1E-19 144.5 14.7 114 278-391 29-142 (177)
390 1a9n_A U2A', U2A'; complex (nu 99.5 1.1E-14 3.8E-19 145.8 8.7 135 444-620 15-156 (176)
391 1ds9_A Outer arm dynein; leuci 99.5 2.7E-16 9.1E-21 161.0 -5.2 154 203-386 16-185 (198)
392 1ds9_A Outer arm dynein; leuci 99.5 2.2E-16 7.6E-21 161.6 -6.4 152 225-405 14-180 (198)
393 1a9n_A U2A', U2A'; complex (nu 99.5 1.3E-14 4.4E-19 145.3 6.0 138 248-390 14-157 (176)
394 4fs7_A Uncharacterized protein 99.5 3.8E-13 1.3E-17 153.4 18.2 269 97-381 59-328 (394)
395 4fs7_A Uncharacterized protein 99.5 1.6E-12 5.5E-17 148.2 21.5 219 126-380 64-283 (394)
396 3g39_A Variable lymphocyte rec 99.4 7.1E-13 2.4E-17 131.6 11.9 113 57-195 3-116 (170)
397 2r9u_A Variable lymphocyte rec 99.4 6.9E-13 2.4E-17 132.1 10.8 104 451-593 15-118 (174)
398 3g39_A Variable lymphocyte rec 99.4 1.4E-12 4.8E-17 129.4 12.0 90 301-390 30-119 (170)
399 2r9u_A Variable lymphocyte rec 99.4 1.8E-12 6.1E-17 129.1 12.1 92 301-392 33-124 (174)
400 4gt6_A Cell surface protein; l 99.3 1.5E-10 5E-15 131.9 21.0 331 101-484 55-390 (394)
401 3un9_A NLR family member X1; l 99.3 5E-14 1.7E-18 158.3 -8.0 186 180-385 71-282 (372)
402 3un9_A NLR family member X1; l 99.3 1E-13 3.5E-18 155.7 -5.5 44 442-485 233-283 (372)
403 2ifg_A High affinity nerve gro 99.2 2.8E-11 9.5E-16 135.5 10.3 137 62-223 7-146 (347)
404 3tm0_A Aminoglycoside 3'-phosp 99.2 8.1E-11 2.8E-15 126.0 11.6 143 741-893 13-212 (263)
405 4gt6_A Cell surface protein; l 99.2 9.6E-10 3.3E-14 125.1 20.8 322 231-616 66-390 (394)
406 2ifg_A High affinity nerve gro 99.1 7.5E-11 2.6E-15 131.9 9.0 90 273-363 27-117 (347)
407 1nd4_A Aminoglycoside 3'-phosp 99.0 3.2E-10 1.1E-14 121.2 9.1 137 743-894 21-214 (264)
408 2ra8_A Uncharacterized protein 99.0 1.2E-10 4.1E-15 129.5 1.6 180 85-266 107-320 (362)
409 4h09_A Hypothetical leucine ri 98.9 3.4E-08 1.2E-12 111.6 19.5 283 86-381 47-341 (379)
410 4h09_A Hypothetical leucine ri 98.9 6.6E-08 2.2E-12 109.3 20.1 261 105-389 42-302 (379)
411 3dxp_A Putative acyl-COA dehyd 98.9 5E-09 1.7E-13 117.5 10.5 142 746-894 42-248 (359)
412 3sg8_A APH(2'')-ID; antibiotic 98.8 3.5E-09 1.2E-13 115.8 5.8 186 747-947 25-287 (304)
413 2ra8_A Uncharacterized protein 98.8 9E-10 3.1E-14 122.5 0.6 60 222-285 165-227 (362)
414 3rw6_A Nuclear RNA export fact 98.6 3.2E-10 1.1E-14 119.4 -8.4 12 62-73 77-88 (267)
415 3r70_A Aminoglycoside phosphot 98.5 7.8E-07 2.7E-11 97.8 13.1 136 743-894 38-237 (320)
416 3d1u_A Putative fructosamine-3 98.3 2.8E-06 9.7E-11 91.3 13.2 76 746-825 19-97 (288)
417 3tdw_A Gentamicin resistance p 98.3 5.6E-06 1.9E-10 90.1 13.4 136 747-894 24-224 (306)
418 3rw6_A Nuclear RNA export fact 98.2 2E-07 7E-12 98.0 1.6 92 201-294 137-237 (267)
419 1io0_A Tropomodulin; LRR prote 98.2 1.9E-07 6.5E-12 93.5 1.0 43 443-485 116-164 (185)
420 4gkh_A Aminoglycoside 3'-phosp 98.2 7.8E-06 2.7E-10 87.3 13.3 135 748-893 30-222 (272)
421 1io0_A Tropomodulin; LRR prote 98.1 2.5E-07 8.6E-12 92.6 -0.6 65 203-267 63-137 (185)
422 3ovc_A Hygromycin-B 4-O-kinase 98.1 1.2E-05 4E-10 89.7 12.1 145 744-894 43-243 (362)
423 3ats_A Putative uncharacterize 98.1 4.5E-06 1.5E-10 93.2 7.9 80 747-826 25-121 (357)
424 2q83_A YTAA protein; 2635576, 97.8 7.4E-05 2.5E-09 82.7 12.1 141 748-893 38-251 (346)
425 3f7w_A Putative fructosamine-3 97.7 8.9E-05 3.1E-09 79.8 10.6 79 743-825 16-97 (288)
426 3jr1_A Putative fructosamine-3 97.7 0.00018 6.2E-09 77.8 12.6 140 746-890 40-232 (312)
427 2olc_A MTR kinase, methylthior 97.7 0.00014 4.9E-09 82.2 11.5 75 747-823 35-120 (397)
428 3e4g_A ATP synthase subunit S, 97.4 2.2E-05 7.7E-10 76.3 0.1 88 301-388 61-155 (176)
429 2pyw_A Uncharacterized protein 97.4 0.00061 2.1E-08 77.6 11.8 77 863-943 231-312 (420)
430 3e4g_A ATP synthase subunit S, 97.3 3.3E-05 1.1E-09 75.1 -0.2 35 253-287 61-95 (176)
431 3dxq_A Choline/ethanolamine ki 97.3 0.00073 2.5E-08 73.1 10.1 71 747-825 23-95 (301)
432 1nw1_A Choline kinase (49.2 KD 97.2 0.0012 4.1E-08 75.1 10.9 73 747-825 78-159 (429)
433 2ppq_A HSK, HK, homoserine kin 97.1 0.0025 8.5E-08 69.5 12.8 160 732-894 7-217 (322)
434 3feg_A Choline/ethanolamine ki 97.1 0.0014 4.8E-08 72.8 10.7 143 747-894 55-254 (379)
435 3csv_A Aminoglycoside phosphot 97.0 0.0012 4E-08 72.6 9.0 142 748-894 24-217 (333)
436 1zyl_A Hypothetical protein YI 96.9 0.0057 2E-07 66.8 13.1 143 748-894 32-223 (328)
437 2qg7_A Ethanolamine kinase PV0 96.9 0.0032 1.1E-07 71.9 10.9 74 747-825 113-188 (458)
438 3c5i_A Choline kinase; choline 96.8 0.0023 7.7E-08 71.4 8.6 73 748-825 39-121 (369)
439 1pgv_A TMD-1, tropomodulin TMD 96.6 0.00036 1.2E-08 69.2 0.6 61 323-383 68-136 (197)
440 3rfe_A Platelet glycoprotein I 96.5 0.004 1.4E-07 57.5 6.8 56 329-386 12-68 (130)
441 1pgv_A TMD-1, tropomodulin TMD 96.5 0.00044 1.5E-08 68.5 0.2 59 205-263 70-136 (197)
442 3i1a_A Spectinomycin phosphotr 96.4 0.0092 3.1E-07 65.5 10.4 68 751-825 32-108 (339)
443 2yle_A Protein spire homolog 1 96.3 0.045 1.5E-06 54.4 13.2 101 824-945 34-134 (229)
444 3f2s_A CK, chetk-alpha, cholin 96.3 0.015 5.1E-07 64.8 11.0 143 748-894 58-280 (401)
445 3rfe_A Platelet glycoprotein I 95.9 0.0091 3.1E-07 55.1 5.9 37 110-146 32-68 (130)
446 3mes_A Choline kinase; malaria 95.2 0.047 1.6E-06 61.4 9.4 142 747-894 75-291 (424)
447 3g15_A CK, chetk-alpha, cholin 92.8 0.52 1.8E-05 52.7 11.8 30 865-894 245-280 (401)
448 4ann_A ESSB; membrane protein, 83.5 4.2 0.00014 40.3 9.2 116 796-948 43-158 (215)
449 4ano_A ESSB; membrane protein, 77.9 10 0.00035 37.6 9.9 113 796-948 48-163 (219)
450 2ks1_B Epidermal growth factor 70.9 0.82 2.8E-05 32.4 -0.1 10 688-697 31-40 (44)
451 2k1k_A Ephrin type-A receptor 68.3 0.46 1.6E-05 32.6 -1.8 24 666-689 10-33 (38)
452 3cxl_A N-chimerin; SH2, RHO-GA 65.9 0.85 2.9E-05 51.9 -1.4 60 746-808 146-214 (463)
453 2l2t_A Receptor tyrosine-prote 65.1 3.8 0.00013 28.9 2.3 11 687-697 29-39 (44)
454 2ks1_B Epidermal growth factor 49.3 6.7 0.00023 27.8 1.4 23 678-700 18-40 (44)
455 2l2t_A Receptor tyrosine-prote 39.2 14 0.00049 26.1 1.8 24 678-701 17-40 (44)
456 2x6h_A GH13170P, VPS34, phosph 33.4 6.5E+02 0.022 29.5 16.3 25 869-893 551-575 (696)
457 2k9y_A Ephrin type-A receptor 30.9 15 0.0005 25.5 0.8 12 673-684 16-27 (41)
458 3ls8_A Phosphatidylinositol 3- 28.7 7.2E+02 0.025 28.6 16.7 85 801-893 402-501 (614)
459 2lz0_A Uncharacterized protein 26.9 83 0.0028 26.7 5.1 44 314-358 9-52 (100)
460 3hhm_A Phosphatidylinositol-4, 26.2 3.7E+02 0.013 33.3 12.4 25 869-893 937-961 (1091)
461 2lz0_A Uncharacterized protein 24.9 1.6E+02 0.0054 24.9 6.5 47 288-335 7-53 (100)
462 1cja_A Protein (actin-fragmin 24.4 1.2E+02 0.0043 31.9 6.8 140 744-894 71-237 (342)
463 2klu_A T-cell surface glycopro 20.4 53 0.0018 25.2 2.1 18 672-689 12-29 (70)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6.9e-80 Score=768.66 Aligned_cols=599 Identities=32% Similarity=0.522 Sum_probs=447.2
Q ss_pred CCCHHHHHHHHHHHHHhccC--CCCCCCCCCCCCCCcCceEEcCCCCCCCCCCCCCCCceEEEecCCCccccc---cc--
Q 035998 30 TCNPNDLAALEDFMKNFESG--IDGWGTNASSSDCCHWVGITCNSSSSLGLNDSIGSGRVTGLFLYKRRLKGK---LS-- 102 (1020)
Q Consensus 30 ~~~~~~~~aL~~~k~~~~~~--~~~~~~~~~~~~~C~w~gv~C~~~~~~~~~~~~~~~~v~~l~l~~~~l~~~---~~-- 102 (1020)
.+.++|++||++||+++.++ .++|. .++|||+|.||+|+. ++|++|+|+++.+.|. +|
T Consensus 8 ~~~~~~~~all~~k~~~~~~~~l~~W~---~~~~~C~w~gv~C~~------------~~v~~L~L~~~~l~g~~~~l~~~ 72 (768)
T 3rgz_A 8 QSLYREIHQLISFKDVLPDKNLLPDWS---SNKNPCTFDGVTCRD------------DKVTSIDLSSKPLNVGFSAVSSS 72 (768)
T ss_dssp CCHHHHHHHHHHHHTTCSCTTSSTTCC---TTSCGGGSTTEEEET------------TEEEEEECTTSCCCEEHHHHHHH
T ss_pred cCCHHHHHHHHHHHhhCCCcccccCCC---CCCCCcCCcceEECC------------CcEEEEECCCCCcCCccCccChh
Confidence 35689999999999999865 34443 578999999999972 6888888888888876 43
Q ss_pred ---------------------ccccCCCCCcEEecCCCCCCCCCCc--cccCCCCCCeeeccCCCCCCCCCCcc--CCCC
Q 035998 103 ---------------------ESLGNLVQLRFLNLSHNLLKGTVPV--SLVNLPNLEVLDLSSNDLSGPLPQTI--NLPS 157 (1020)
Q Consensus 103 ---------------------~~l~~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~~--~l~~ 157 (1020)
+.++++++|++|+|++|.++|.+|. .++++++|++|+|++|.+++.+|..+ ++++
T Consensus 73 l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 152 (768)
T 3rgz_A 73 LLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS 152 (768)
T ss_dssp TTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTT
T ss_pred HhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCC
Confidence 4677788888888888888888887 78888888888888888877776654 5667
Q ss_pred cceeeeccCccCCCCCccc--c----------------------ccCCcccEEEccCCCCCCCCCCcccccccccccccc
Q 035998 158 IQVLDISSNSLNGSVPTSI--C----------------------KNSSRIRVINLSVNYFSGTLSPGLGNCASLEHLCLG 213 (1020)
Q Consensus 158 L~~L~Ls~N~l~~~ip~~~--~----------------------~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~ 213 (1020)
|++|+|++|++++..|..+ + ..+++|++|+|++|++++.+|. ++++++|++|+|+
T Consensus 153 L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls 231 (768)
T 3rgz_A 153 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDIS 231 (768)
T ss_dssp CSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECC
T ss_pred CCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECc
Confidence 7777777766665444321 1 3566777777777777776666 7888888888888
Q ss_pred ccccccccchhhhhhcccccccccccccCCCCCcccccCCCccEEEccCCcCcccCcccccCC-cccceeeccccccccc
Q 035998 214 MNDLTGGIADDIFQLQKLRLLGLQDNQLSGKLSPSIADLSNLVRLDVSSNNFSGNIPDVFAGL-GEFQYLVAHSNRFTGR 292 (1020)
Q Consensus 214 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~ 292 (1020)
+|++++.+|..+..+++|++|+|++|++++.+|.. .+++|++|++++|++++.+|..+..+ ++|++|++++|++++.
T Consensus 232 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~ 309 (768)
T 3rgz_A 232 GNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309 (768)
T ss_dssp SSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEEC
T ss_pred CCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCc
Confidence 88888888888888888888888777777655543 55566666666666665666555543 6666666666666666
Q ss_pred CCCCCcCCcccccccccccccccccccC-CCCCCCcCEEEcCCCccCCCCCCCCCC------------------------
Q 035998 293 IPHSLSNSPTLNLLNLRNNSLDGSLLLN-CPALTNLTSLDLGTNKFNGPLPTNLPR------------------------ 347 (1020)
Q Consensus 293 ~p~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~p~~l~~------------------------ 347 (1020)
+|..|+++++|++|++++|.+++.+|.. +..+++|++|+|++|++++.+|..+..
T Consensus 310 ~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~ 389 (768)
T 3rgz_A 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC 389 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTT
T ss_pred cchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhh
Confidence 6666666666666666666666555433 555555555555555555555544433
Q ss_pred ---CCCCCeEecCCCcccccCcccccCCCCCCeeeCCCCCCcc-hhhHHHHHhhhcccchhhhhccccCCCCCCCccccc
Q 035998 348 ---CRKLKNINLARNNFSGQIPETYKNFESLSYLSLSNSSIYN-LSSALQVLQQCRNLTTLVLTLNFRNEKLPTDPRLHF 423 (1020)
Q Consensus 348 ---l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~i~~-l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 423 (1020)
+++|++|++++|++++.+|..+.++++|++|++++|+++. +|. .+..+++|+.|+++.|.+...++. .+..+
T Consensus 390 ~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~L~L~~n~l~~~~p~-~~~~l 465 (768)
T 3rgz_A 390 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS---SLGSLSKLRDLKLWLNMLEGEIPQ-ELMYV 465 (768)
T ss_dssp CSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCG---GGGGCTTCCEEECCSSCCCSCCCG-GGGGC
T ss_pred hcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccH---HHhcCCCCCEEECCCCcccCcCCH-HHcCC
Confidence 4556666666666666677777777777777777777663 332 356677777777777766554443 34467
Q ss_pred cCceEEEecccccccccchhhhcCCCCcEEecccccccccccccccCcCcCcEEeCCCCcccccCCCCCCCCcccccccC
Q 035998 424 ANLKVLVIASCGLRGSIPQWLRGCSKLQLVDLSWNQLSGTIPVWFGGFQDLFYLDLSNNTFTGEIPKNLTGLPSLITRNI 503 (1020)
Q Consensus 424 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~ 503 (1020)
++|+.|++++|.+.+.+|..+.++++|++|+|++|++++.+|.+|+.+++|++|+|++|+++|.+|..++++++|+.+++
T Consensus 466 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 545 (768)
T 3rgz_A 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEEC
T ss_pred CCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEEC
Confidence 78888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cCCCCCCCcccceeec--c----------------------------------------------cccccccccc-----
Q 035998 504 SLEEPSPDFPFFMRRN--V----------------------------------------------SARGLQYNQI----- 530 (1020)
Q Consensus 504 s~~~~~~~~~~~~~~~--~----------------------------------------------~~~~l~~n~~----- 530 (1020)
+.+.....+|...... . ....+..|.+
T Consensus 546 s~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~ 625 (768)
T 3rgz_A 546 NTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 625 (768)
T ss_dssp CSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECC
T ss_pred CCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCc
Confidence 7776554444211100 0 0001111111
Q ss_pred -----cCCCCeeecccCccccCCCccccCCCcceEEEecCCcceeccCccccCCCcccEEEccCCcccccCCcccccccc
Q 035998 531 -----WSFPPTIDLSLNRLDGSIWPEFGNLKKLHVFDLKHNNLSGPIPSELTGMTSLETLDLSYNNLSGAIPISLEKLSF 605 (1020)
Q Consensus 531 -----~~~~~~l~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~ 605 (1020)
..-.+.|||++|+++|.+|.+|+.+++|+.|+|++|+++|.+|.+|+++++|+.|||++|+++|.+|.++.++++
T Consensus 626 ~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~ 705 (768)
T 3rgz_A 626 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705 (768)
T ss_dssp CSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCC
T ss_pred hhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCC
Confidence 122357999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccCCCCCCCCCcCCccccCCC-CCCCCCCCCccC
Q 035998 606 LSKFSVANNHLTGRIPSGGQFQTFPNSSFDGNN-LCGEHRYSCTID 650 (1020)
Q Consensus 606 L~~l~ls~N~l~g~~p~~~~~~~~~~~~~~~n~-l~~~~~~~c~~~ 650 (1020)
|++|+|++|+|+|.||.+++|++|+..+|.||+ |||.+..+|...
T Consensus 706 L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~ 751 (768)
T 3rgz_A 706 LTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPS 751 (768)
T ss_dssp CSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSC
T ss_pred CCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCC
Confidence 999999999999999999999999999999998 999987788533
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.1e-62 Score=609.60 Aligned_cols=527 Identities=30% Similarity=0.409 Sum_probs=407.8
Q ss_pred CCCCcEEecCCCCCCCCCCccccCCCCCCeeeccCCCCCCCCCC--cc-CCCCcceeeeccCccCCCCCccccccCCccc
Q 035998 108 LVQLRFLNLSHNLLKGTVPVSLVNLPNLEVLDLSSNDLSGPLPQ--TI-NLPSIQVLDISSNSLNGSVPTSICKNSSRIR 184 (1020)
Q Consensus 108 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~--~~-~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~ 184 (1020)
|++|+.++++.|.+. .+|..|+++++|++|||++|.++|.+|. .+ ++++|++|+|++|.+++.+|..++..+++|+
T Consensus 76 L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 154 (768)
T 3rgz_A 76 LTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE 154 (768)
T ss_dssp CTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCS
T ss_pred cCcccccCCcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCC
Confidence 455666666655554 3558899999999999999999998887 66 8999999999999999999998878899999
Q ss_pred EEEccCCCCCCCCCCc---cccccccccccccccccccccchhhhhhcccccccccccccCCCCCcccccCCCccEEEcc
Q 035998 185 VINLSVNYFSGTLSPG---LGNCASLEHLCLGMNDLTGGIADDIFQLQKLRLLGLQDNQLSGKLSPSIADLSNLVRLDVS 261 (1020)
Q Consensus 185 ~L~L~~N~l~~~~~~~---l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 261 (1020)
+|+|++|++++..|.. ++++++|++|+|++|.+++.++. ..+++|++|+|++|++++.+|. ++++++|++|+|+
T Consensus 155 ~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls 231 (768)
T 3rgz_A 155 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDIS 231 (768)
T ss_dssp EEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECC
T ss_pred EEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECc
Confidence 9999999999888877 78899999999999999876664 7889999999999999987777 8999999999999
Q ss_pred CCcCcccCcccccCCcccceeecccccccccCCCCCcCCcccccccccccccccccccCCCCC-CCcCEEEcCCCccCCC
Q 035998 262 SNNFSGNIPDVFAGLGEFQYLVAHSNRFTGRIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPAL-TNLTSLDLGTNKFNGP 340 (1020)
Q Consensus 262 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~ 340 (1020)
+|++++.+|..|..+++|++|++++|++++.+|.. .+++|++|++++|.+++.+|..+... ++|++|+|++|++++.
T Consensus 232 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~ 309 (768)
T 3rgz_A 232 GNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309 (768)
T ss_dssp SSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEEC
T ss_pred CCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCc
Confidence 99999889999999999999999999998887775 78889999999999988888877665 8999999999999888
Q ss_pred CCCCCCCCCCCCeEecCCCcccccCccc-ccCCCCCCeeeCCCCCCc-chhhHHHHHhhhc-ccchhhhhccccCCCCCC
Q 035998 341 LPTNLPRCRKLKNINLARNNFSGQIPET-YKNFESLSYLSLSNSSIY-NLSSALQVLQQCR-NLTTLVLTLNFRNEKLPT 417 (1020)
Q Consensus 341 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~l~~N~i~-~l~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~ 417 (1020)
+|..|..+++|++|+|++|++++.+|.. +..+++|++|++++|+++ .+|..+ ..++ +|+.|+++.|.+...++.
T Consensus 310 ~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l---~~l~~~L~~L~Ls~N~l~~~~~~ 386 (768)
T 3rgz_A 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL---TNLSASLLTLDLSSNNFSGPILP 386 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTH---HHHTTTCSEEECCSSEEEEECCT
T ss_pred cchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHH---HhhhcCCcEEEccCCCcCCCcCh
Confidence 8888999999999999999998888865 888899999999999887 566543 3343 555555555544322221
Q ss_pred C-------------------------ccccccCceEEEecccccccccchhhhcCCCCcEEecccccccccccccccCcC
Q 035998 418 D-------------------------PRLHFANLKVLVIASCGLRGSIPQWLRGCSKLQLVDLSWNQLSGTIPVWFGGFQ 472 (1020)
Q Consensus 418 ~-------------------------~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 472 (1020)
. .+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|++++.+|..|+.++
T Consensus 387 ~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 466 (768)
T 3rgz_A 387 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK 466 (768)
T ss_dssp TTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred hhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCC
Confidence 1 123445566666666666666666666666666666666666666666666666
Q ss_pred cCcEEeCCCCcccccCCCCCCCCcccccccCcCCCCCCCcc--cceeeccccccccccccc-CCC---------Ceeecc
Q 035998 473 DLFYLDLSNNTFTGEIPKNLTGLPSLITRNISLEEPSPDFP--FFMRRNVSARGLQYNQIW-SFP---------PTIDLS 540 (1020)
Q Consensus 473 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~s~~~~~~~~~--~~~~~~~~~~~l~~n~~~-~~~---------~~l~Ls 540 (1020)
+|++|+|++|++++.+|..++++++|+.++++.+......| +.....++.+++++|++. .+| +.||++
T Consensus 467 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 546 (768)
T 3rgz_A 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECC
T ss_pred CceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECC
Confidence 66666666666666666666666666666666665554444 223345566666666554 222 345666
Q ss_pred cCccccCCCc----------------------------------------------------------------------
Q 035998 541 LNRLDGSIWP---------------------------------------------------------------------- 550 (1020)
Q Consensus 541 ~N~l~~~~~~---------------------------------------------------------------------- 550 (1020)
+|+++|.+|.
T Consensus 547 ~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~ 626 (768)
T 3rgz_A 547 TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 626 (768)
T ss_dssp SSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCC
T ss_pred CCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCch
Confidence 6666655554
Q ss_pred cccCCCcceEEEecCCcceeccCccccCCCcccEEEccCCcccccCCccccccccccccccccccccccCCCC-CCCCCc
Q 035998 551 EFGNLKKLHVFDLKHNNLSGPIPSELTGMTSLETLDLSYNNLSGAIPISLEKLSFLSKFSVANNHLTGRIPSG-GQFQTF 629 (1020)
Q Consensus 551 ~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~~p~~-~~~~~~ 629 (1020)
.|+.+++|+.|||++|+++|.+|.+|+++++|+.|||++|+++|.+|.+++++++|+.|+|++|+++|.||.. +.+..+
T Consensus 627 ~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L 706 (768)
T 3rgz_A 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 706 (768)
T ss_dssp SCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCC
T ss_pred hhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCC
Confidence 3445677888999999999899999999999999999999999999999999999999999999999998864 556677
Q ss_pred CCccccCCCCCCCC
Q 035998 630 PNSSFDGNNLCGEH 643 (1020)
Q Consensus 630 ~~~~~~~n~l~~~~ 643 (1020)
..+.+.+|++.|..
T Consensus 707 ~~L~ls~N~l~g~i 720 (768)
T 3rgz_A 707 TEIDLSNNNLSGPI 720 (768)
T ss_dssp SEEECCSSEEEEEC
T ss_pred CEEECcCCcccccC
Confidence 78888899888863
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.4e-57 Score=562.79 Aligned_cols=573 Identities=19% Similarity=0.237 Sum_probs=413.3
Q ss_pred CCcCceEEcCCCCCCCCCCCCCCCceEEEecCCCcccccccccccCCCCCcEEecCCCCCCCCCCccccCCCCCCeeecc
Q 035998 62 CCHWVGITCNSSSSLGLNDSIGSGRVTGLFLYKRRLKGKLSESLGNLVQLRFLNLSHNLLKGTVPVSLVNLPNLEVLDLS 141 (1020)
Q Consensus 62 ~C~w~gv~C~~~~~~~~~~~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 141 (1020)
.|.+..|.|+....+.+|.+.+ .+++.|+|++|.+++..+.+|+++++|++|+|++|.+++..|..|+++++|++|+|+
T Consensus 3 ~~~~~~~~cs~~~L~~ip~~~~-~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 81 (680)
T 1ziw_A 3 TVSHEVADCSHLKLTQVPDDLP-TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 81 (680)
T ss_dssp -CBSSEEECCSSCCSSCCSCSC-TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECC
T ss_pred eeECCeeECCCCCccccccccC-CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECC
Confidence 4778889999999999998876 699999999999999888899999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcc-CCCCcceeeeccCccCCCCCccccccCCcccEEEccCCCCCCCCCCccccccccccccccccccccc
Q 035998 142 SNDLSGPLPQTI-NLPSIQVLDISSNSLNGSVPTSICKNSSRIRVINLSVNYFSGTLSPGLGNCASLEHLCLGMNDLTGG 220 (1020)
Q Consensus 142 ~n~l~~~~p~~~-~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 220 (1020)
+|.+++.++..+ ++++|++|+|++|+++ .+|...+..+++|++|+|++|.+++..|..++++++|++|+|++|.+++.
T Consensus 82 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 160 (680)
T 1ziw_A 82 HNELSQLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL 160 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred CCccCccChhhhccCCCCCEEECCCCccC-ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccccc
Confidence 999998888777 8999999999999998 56666667899999999999999999999999999999999999999988
Q ss_pred cchhhh--hhcccccccccccccCCCCCcccccCCCccEEEccCCcCcccCccccc---CCcccceeecccccccccCCC
Q 035998 221 IADDIF--QLQKLRLLGLQDNQLSGKLSPSIADLSNLVRLDVSSNNFSGNIPDVFA---GLGEFQYLVAHSNRFTGRIPH 295 (1020)
Q Consensus 221 ~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~L~L~~N~l~~~~p~ 295 (1020)
.+..+. .+++|++|++++|++++..|..+..+.+|+.|++++|.+.+.....+. ..++|+.|++++|++++..|.
T Consensus 161 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~ 240 (680)
T 1ziw_A 161 KSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240 (680)
T ss_dssp CHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT
T ss_pred CHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh
Confidence 887765 458999999999999999998888877776666666655432221111 224566666666666666666
Q ss_pred CCcCCcc--cccccccccccccccccCCCCCCCcCEEEcCCCccCCCCCCCCCCCCCCCeEecCCCcccc-----cCcc-
Q 035998 296 SLSNSPT--LNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNKFNGPLPTNLPRCRKLKNINLARNNFSG-----QIPE- 367 (1020)
Q Consensus 296 ~~~~l~~--L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~-----~~p~- 367 (1020)
.|.+++. |+.|++++|++++..+..|..+++|++|+|++|++++..|..|..+++|+.|++++|...+ .+|.
T Consensus 241 ~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i 320 (680)
T 1ziw_A 241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKI 320 (680)
T ss_dssp TTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEE
T ss_pred HhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccccccccc
Confidence 6655543 6666666666665555556666666666666666665556666666666666666554332 1222
Q ss_pred ---cccCCCCCCeeeCCCCCCcchhhHHHHHhhhcccchhhhhccccC-CCCCCCcccc--ccCceEEEecccccccccc
Q 035998 368 ---TYKNFESLSYLSLSNSSIYNLSSALQVLQQCRNLTTLVLTLNFRN-EKLPTDPRLH--FANLKVLVIASCGLRGSIP 441 (1020)
Q Consensus 368 ---~~~~l~~L~~L~l~~N~i~~l~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~~--~~~L~~L~l~~n~l~~~~p 441 (1020)
.|..+++|++|++++|.++.++.. .+..+++|+.|+++.|... ..++...+.. .++|+.|++++|.+.+..|
T Consensus 321 ~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~ 398 (680)
T 1ziw_A 321 DDFSFQWLKCLEHLNMEDNDIPGIKSN--MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES 398 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCCCCTT--TTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECT
T ss_pred ChhhcccCCCCCEEECCCCccCCCChh--HhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeECh
Confidence 455566666666666666554432 3455566666666555421 1122222211 2356666666666666666
Q ss_pred hhhhcCCCCcEEeccccccccccc-ccccCcCcCcEEeCCCCcccccCCCCCCCCcccccccCcCCCCC--CC--cccce
Q 035998 442 QWLRGCSKLQLVDLSWNQLSGTIP-VWFGGFQDLFYLDLSNNTFTGEIPKNLTGLPSLITRNISLEEPS--PD--FPFFM 516 (1020)
Q Consensus 442 ~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~s~~~~~--~~--~~~~~ 516 (1020)
..+..+++|+.|+|++|++++.+| ..|.++++|++|+|++|++++..+..+..+++|+.++++.+... .. ..+..
T Consensus 399 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~ 478 (680)
T 1ziw_A 399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP 478 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTT
T ss_pred hhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccccc
Confidence 666666666666666666655444 45666666666666666666555666666666666665544332 11 12333
Q ss_pred eecccccccccccccCCC----------CeeecccCccccCC--------CccccCCCcceEEEecCCcceeccC-cccc
Q 035998 517 RRNVSARGLQYNQIWSFP----------PTIDLSLNRLDGSI--------WPEFGNLKKLHVFDLKHNNLSGPIP-SELT 577 (1020)
Q Consensus 517 ~~~~~~~~l~~n~~~~~~----------~~l~Ls~N~l~~~~--------~~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~ 577 (1020)
...++.+++++|++..++ +.|+|++|++++.. +..|+++++|+.|+|++|+++ .+| ..|.
T Consensus 479 l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~ 557 (680)
T 1ziw_A 479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFK 557 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred CCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHcc
Confidence 445555666666555443 46899999998642 234899999999999999998 455 4699
Q ss_pred CCCcccEEEccCCcccccCCccccccccccccccccccccccCCCC-C-CCCCcCCccccCCCC
Q 035998 578 GMTSLETLDLSYNNLSGAIPISLEKLSFLSKFSVANNHLTGRIPSG-G-QFQTFPNSSFDGNNL 639 (1020)
Q Consensus 578 ~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~~p~~-~-~~~~~~~~~~~~n~l 639 (1020)
++++|++|||++|+|++..|..+.++++|+.|++++|++++.+|.. + .+.++....+.+|++
T Consensus 558 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~ 621 (680)
T 1ziw_A 558 DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 621 (680)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCC
T ss_pred cccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCc
Confidence 9999999999999999766677899999999999999999977753 2 466778888999974
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.6e-57 Score=551.45 Aligned_cols=535 Identities=19% Similarity=0.198 Sum_probs=347.4
Q ss_pred CCCCCCc--CceEEcCCCCCCCCCCCCCCCceEEEecCCCcccccccccccCCCCCcEEecCCCCCCCCCCccccCCCCC
Q 035998 58 SSSDCCH--WVGITCNSSSSLGLNDSIGSGRVTGLFLYKRRLKGKLSESLGNLVQLRFLNLSHNLLKGTVPVSLVNLPNL 135 (1020)
Q Consensus 58 ~~~~~C~--w~gv~C~~~~~~~~~~~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 135 (1020)
+..+.|. +..|.|+..+.+.+|.+.+ ..++.|+|++|.+++..|.+|+++++|++|+|++|++++..|.+|+++++|
T Consensus 5 ~~~C~~~~~~~~~~c~~~~l~~iP~~l~-~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 83 (606)
T 3t6q_A 5 DQKCIEKEVNKTYNCENLGLNEIPGTLP-NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRL 83 (606)
T ss_dssp -CCCEEEETTTEEECTTSCCSSCCTTSC-TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTC
T ss_pred cCceecccCCceEECCCCCcccCcCCCC-CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCcccc
Confidence 3344454 6779999999999998876 489999999999999989999999999999999999998889999999999
Q ss_pred CeeeccCCCCCCCCCCcc-CCCCcceeeeccCccCCCCCccccccCCcccEEEccCCCCCCCCCCccccccccccccccc
Q 035998 136 EVLDLSSNDLSGPLPQTI-NLPSIQVLDISSNSLNGSVPTSICKNSSRIRVINLSVNYFSGTLSPGLGNCASLEHLCLGM 214 (1020)
Q Consensus 136 ~~L~L~~n~l~~~~p~~~-~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~ 214 (1020)
++|+|++|++++..|..+ ++++|++|+|++|++++ ++...+..+++|++|+|++|++++...+.+..+++|++|+|++
T Consensus 84 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 162 (606)
T 3t6q_A 84 DTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN 162 (606)
T ss_dssp CEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSC-GGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCS
T ss_pred CeeeCCCCcccccChhhhcccccccEeeccccCccc-CCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEccc
Confidence 999999999999989888 89999999999999994 4444457899999999999999986655666699999999999
Q ss_pred cccccccchhhhhhcccc--cccccccccCCCCCcccccCCCccEEEccCCcCcccCcccccCCcccceeeccccccc--
Q 035998 215 NDLTGGIADDIFQLQKLR--LLGLQDNQLSGKLSPSIADLSNLVRLDVSSNNFSGNIPDVFAGLGEFQYLVAHSNRFT-- 290 (1020)
Q Consensus 215 N~l~~~~~~~~~~l~~L~--~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-- 290 (1020)
|.+++..+..+..+++|+ .|++++|++++..|..+.. .+|++|++++|.. .+..+.++.++....+.-+.+.
T Consensus 163 n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~~~ 238 (606)
T 3t6q_A 163 NAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFEDM 238 (606)
T ss_dssp SCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCTTS
T ss_pred CcccccChhhhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCchh---HHHHhhhccccchhheechhhccc
Confidence 999998899999999999 8999999999877777654 6899999998862 2223333322222111111111
Q ss_pred ---ccCCCCCcCCc--ccccccccccccccccccCCCCCCCcCEEEcCCCccCCCCCCCCCCCCCCCeEecCCCcccccC
Q 035998 291 ---GRIPHSLSNSP--TLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNKFNGPLPTNLPRCRKLKNINLARNNFSGQI 365 (1020)
Q Consensus 291 ---~~~p~~~~~l~--~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 365 (1020)
...+..+..+. +|+.|++++|.+++..+..|..+++|++|++++|+++ .+|..+..+++|++|++++|++++..
T Consensus 239 ~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~ 317 (606)
T 3t6q_A 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLC 317 (606)
T ss_dssp CCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGG
T ss_pred cccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCc
Confidence 11111122211 3444444444444444444444444444444444444 34444444444444444444444444
Q ss_pred cccccCCCCCCeeeCCCCCCc-chhhHHHHHhhhcccchhhhhccccCCCCC-CCccccccCceEEEecccccccccchh
Q 035998 366 PETYKNFESLSYLSLSNSSIY-NLSSALQVLQQCRNLTTLVLTLNFRNEKLP-TDPRLHFANLKVLVIASCGLRGSIPQW 443 (1020)
Q Consensus 366 p~~~~~l~~L~~L~l~~N~i~-~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~p~~ 443 (1020)
|..+..+++|++|++++|.+. .++.. .+..+++|+.|+++.|.+..... ...+..+++|+.|++++|.+.+..|..
T Consensus 318 ~~~~~~l~~L~~L~l~~n~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 395 (606)
T 3t6q_A 318 QISASNFPSLTHLSIKGNTKRLELGTG--CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA 395 (606)
T ss_dssp GGCGGGCTTCSEEECCSCSSCCBCCSS--TTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTT
T ss_pred hhhhhccCcCCEEECCCCCcccccchh--hhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHH
Confidence 444444444444444444443 22221 23344444444444443322210 122345667777777777777777777
Q ss_pred hhcCCCCcEEecccccccccccc-cccCcCcCcEEeCCCCcccccCCCCCCCCcccccccCcCCCCCCCcccceeecccc
Q 035998 444 LRGCSKLQLVDLSWNQLSGTIPV-WFGGFQDLFYLDLSNNTFTGEIPKNLTGLPSLITRNISLEEPSPDFPFFMRRNVSA 522 (1020)
Q Consensus 444 l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~s~~~~~~~~~~~~~~~~~~ 522 (1020)
+..+++|+.|++++|++++..|. .|..+++|++|+|++|.+++.+|..++++++|+.
T Consensus 396 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~---------------------- 453 (606)
T 3t6q_A 396 FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQH---------------------- 453 (606)
T ss_dssp TTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCE----------------------
T ss_pred hcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCE----------------------
Confidence 88888888888888888766554 4777888888888888888777777777777743
Q ss_pred cccccccccCCCCeeecccCccccC---CCccccCCCcceEEEecCCcceeccCccccCCCcccEEEccCCcccccCCcc
Q 035998 523 RGLQYNQIWSFPPTIDLSLNRLDGS---IWPEFGNLKKLHVFDLKHNNLSGPIPSELTGMTSLETLDLSYNNLSGAIPIS 599 (1020)
Q Consensus 523 ~~l~~n~~~~~~~~l~Ls~N~l~~~---~~~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~ 599 (1020)
|++++|++++. .+..|+.+++|+.|+|++|++++..|..|+++++|++|||++|++++.+|..
T Consensus 454 --------------L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 519 (606)
T 3t6q_A 454 --------------LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA 519 (606)
T ss_dssp --------------EECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGG
T ss_pred --------------EECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhH
Confidence 44444444431 1233455555555555555555444555555555555555555555555555
Q ss_pred ccccccccccccccccccccCCCC-CCCCCcCCccccCCC
Q 035998 600 LEKLSFLSKFSVANNHLTGRIPSG-GQFQTFPNSSFDGNN 638 (1020)
Q Consensus 600 l~~l~~L~~l~ls~N~l~g~~p~~-~~~~~~~~~~~~~n~ 638 (1020)
+.+++.| .|++++|++++.+|.. +.+.++....+.+|+
T Consensus 520 l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 520 LSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp GTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred hCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCC
Confidence 5555555 5555555555444431 223334444445554
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.2e-58 Score=561.59 Aligned_cols=474 Identities=20% Similarity=0.255 Sum_probs=280.3
Q ss_pred CCHHHHHHHHHHHHHhccCCCCCC--------CCCCCCCCCcC---ceEEcCCCCCCCCCCCCCCCceEEEecCCCcccc
Q 035998 31 CNPNDLAALEDFMKNFESGIDGWG--------TNASSSDCCHW---VGITCNSSSSLGLNDSIGSGRVTGLFLYKRRLKG 99 (1020)
Q Consensus 31 ~~~~~~~aL~~~k~~~~~~~~~~~--------~~~~~~~~C~w---~gv~C~~~~~~~~~~~~~~~~v~~l~l~~~~l~~ 99 (1020)
....|++||.+||+++.++.+.+. .|..++|||.| .||+|+.. ++|++|+|+++++.|
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-----------~~V~~L~L~~~~l~g 95 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-----------GRVTGLSLEGFGASG 95 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-----------CCEEEEECTTSCCEE
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-----------CCEEEEEecCcccCC
Confidence 446799999999999976532211 22346899999 99999752 799999999999999
Q ss_pred cccccccCCCCCcEEecCCCCC------CC------CCCccccCCCCCCeeeccCCCCCCCCCCccC--CCCcceeeec-
Q 035998 100 KLSESLGNLVQLRFLNLSHNLL------KG------TVPVSLVNLPNLEVLDLSSNDLSGPLPQTIN--LPSIQVLDIS- 164 (1020)
Q Consensus 100 ~~~~~l~~l~~L~~L~L~~n~l------~~------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~--l~~L~~L~Ls- 164 (1020)
.+|+++++|++|++|+|++|.+ .| .+|... +.+|+ +++++|.+.+.+|..+. +..+..+++.
T Consensus 96 ~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~ 172 (636)
T 4eco_A 96 RVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQ 172 (636)
T ss_dssp EECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTS
T ss_pred cCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccc
Confidence 9999999999999999999977 33 344443 45566 77777777776665542 2223333332
Q ss_pred -------------------cCccCCCCCccccccCCcccEEEccCCCCCCC-----------------CCCccc--cccc
Q 035998 165 -------------------SNSLNGSVPTSICKNSSRIRVINLSVNYFSGT-----------------LSPGLG--NCAS 206 (1020)
Q Consensus 165 -------------------~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~-----------------~~~~l~--~l~~ 206 (1020)
.|+++| +|..+ ..+++|++|+|++|.+++. +|..++ ++++
T Consensus 173 ~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~ 250 (636)
T 4eco_A 173 KSIKKSSRITLKDTQIGQLSNNITF-VSKAV-MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKD 250 (636)
T ss_dssp CCCCCCCCCCCCTTTTTCCSCEEEE-ECGGG-GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTT
T ss_pred cccccccccchhhhhhccccCCCcc-CCHHH-hcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCC
Confidence 455554 55543 3455566666666665553 555555 5566
Q ss_pred cccccccccccccccchhhhhhcccccccccccc-cCC-CCCcccccC------CCccEEEccCCcCcccCcc--cccCC
Q 035998 207 LEHLCLGMNDLTGGIADDIFQLQKLRLLGLQDNQ-LSG-KLSPSIADL------SNLVRLDVSSNNFSGNIPD--VFAGL 276 (1020)
Q Consensus 207 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~-~~~~~~~~l------~~L~~L~Ls~N~l~~~~p~--~~~~l 276 (1020)
|++|+|++|++.+.+|..++++++|++|+|++|+ ++| .+|..++.+ ++|++|++++|+++ .+|. .|+++
T Consensus 251 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l 329 (636)
T 4eco_A 251 LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKM 329 (636)
T ss_dssp CCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTC
T ss_pred CCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccC
Confidence 6666666666555555555556666666666665 555 455555554 55666666666655 4555 55555
Q ss_pred cccceeecccccccccCCCCCcCCcccccccccccccccccccCCCCCCC-cCEEEcCCCccCCCCCCCCCCCC--CCCe
Q 035998 277 GEFQYLVAHSNRFTGRIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTN-LTSLDLGTNKFNGPLPTNLPRCR--KLKN 353 (1020)
Q Consensus 277 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~p~~l~~l~--~L~~ 353 (1020)
++|++|++++|+++|.+| .++.+++|++|++++|+++ .+|..+..+++ |++|++++|+++ .+|..+..++ +|++
T Consensus 330 ~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~ 406 (636)
T 4eco_A 330 KKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSA 406 (636)
T ss_dssp TTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEE
T ss_pred CCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCE
Confidence 566666666666655555 5555556666666666555 44444555555 666666666655 4555554433 5566
Q ss_pred EecCCCcccccCccccc-------CCCCCCeeeCCCCCCcchhhHHHHHhhhcccchhhhhccccCCCCCCCccccccCc
Q 035998 354 INLARNNFSGQIPETYK-------NFESLSYLSLSNSSIYNLSSALQVLQQCRNLTTLVLTLNFRNEKLPTDPRLHFANL 426 (1020)
Q Consensus 354 L~L~~N~l~~~~p~~~~-------~l~~L~~L~l~~N~i~~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L 426 (1020)
|++++|++++.+|..|. .+++|++|++++|+++.+|.
T Consensus 407 L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~------------------------------------ 450 (636)
T 4eco_A 407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK------------------------------------ 450 (636)
T ss_dssp EECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCT------------------------------------
T ss_pred EECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCH------------------------------------
Confidence 66666666555555555 44455555555555443332
Q ss_pred eEEEecccccccccchhhhcCCCCcEEeccccccccccccc-ccCc-------CcCcEEeCCCCcccccCCCCCC--CCc
Q 035998 427 KVLVIASCGLRGSIPQWLRGCSKLQLVDLSWNQLSGTIPVW-FGGF-------QDLFYLDLSNNTFTGEIPKNLT--GLP 496 (1020)
Q Consensus 427 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~l-------~~L~~L~Ls~N~l~~~~p~~~~--~l~ 496 (1020)
..+..+++|+.|+|++|+++ .+|.. +... ++|++|+|++|+++ .+|..+. .++
T Consensus 451 ---------------~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~ 513 (636)
T 4eco_A 451 ---------------ELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLP 513 (636)
T ss_dssp ---------------HHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCT
T ss_pred ---------------HHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCC
Confidence 22333444555555555554 33322 2211 14555555555554 3444433 444
Q ss_pred ccccccCcCCCCCCCcccceeecccccccccccccCCCCeeecccCccccCCCccccCCCcceEEEe------cCCccee
Q 035998 497 SLITRNISLEEPSPDFPFFMRRNVSARGLQYNQIWSFPPTIDLSLNRLDGSIWPEFGNLKKLHVFDL------KHNNLSG 570 (1020)
Q Consensus 497 ~L~~l~~s~~~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~l~Ls~N~l~~~~~~~~~~L~~L~~L~L------s~N~l~~ 570 (1020)
+| +.|+|++|+|++ +|..++.+++|+.|+| ++|++.+
T Consensus 514 ~L------------------------------------~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~ 556 (636)
T 4eco_A 514 YL------------------------------------VGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLR 556 (636)
T ss_dssp TC------------------------------------CEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCC
T ss_pred Cc------------------------------------CEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccc
Confidence 33 234444555554 4555555555555555 4455666
Q ss_pred ccCccccCCCcccEEEccCCcccccCCcccccccccccccccccccc
Q 035998 571 PIPSELTGMTSLETLDLSYNNLSGAIPISLEKLSFLSKFSVANNHLT 617 (1020)
Q Consensus 571 ~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~ 617 (1020)
.+|..++++++|++|||++|+| +.+|..+. ++|+.|++++|++.
T Consensus 557 ~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 557 EWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred cChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence 6666666666666666666666 46666554 56666666666554
No 6
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.6e-57 Score=558.31 Aligned_cols=491 Identities=18% Similarity=0.218 Sum_probs=331.0
Q ss_pred CCCCHHHHHHHHHHHHHhccCCCCCCCC--CCCCCC--CcC------------ceEEcCCCCCCCCCCCCCCCceEEEec
Q 035998 29 LTCNPNDLAALEDFMKNFESGIDGWGTN--ASSSDC--CHW------------VGITCNSSSSLGLNDSIGSGRVTGLFL 92 (1020)
Q Consensus 29 ~~~~~~~~~aL~~~k~~~~~~~~~~~~~--~~~~~~--C~w------------~gv~C~~~~~~~~~~~~~~~~v~~l~l 92 (1020)
.++..+|++||++||+++.++ +|... |+..+| |.| .||+|+. .++|++|+|
T Consensus 264 ~~~~~~d~~ALl~~k~~l~~~--~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-----------~~~V~~L~L 330 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALDGK--NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-----------NGRVTGLSL 330 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTTGG--GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-----------TSCEEEEEC
T ss_pred cccchHHHHHHHHHHHHcCCC--CCCcCCCcccccCCccccccccccccccCcCceEecC-----------CCCEEEEEC
Confidence 345678999999999999765 78543 222344 999 9999985 279999999
Q ss_pred CCCcccccccccccCCCCCcEEec-CCCCCCCCCCccc------------------------------------------
Q 035998 93 YKRRLKGKLSESLGNLVQLRFLNL-SHNLLKGTVPVSL------------------------------------------ 129 (1020)
Q Consensus 93 ~~~~l~~~~~~~l~~l~~L~~L~L-~~n~l~~~~p~~l------------------------------------------ 129 (1020)
+++++.|.+|++|++|++|++|+| ++|.++|..|...
T Consensus 331 s~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~ 410 (876)
T 4ecn_A 331 AGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINR 410 (876)
T ss_dssp TTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHT
T ss_pred ccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhh
Confidence 999999999999999999999999 8998887644321
Q ss_pred ---------cCCCCCCeeeccC--CCCCCCCCCcc-CCCCcceeeeccCccCC-----------------CCCccc-ccc
Q 035998 130 ---------VNLPNLEVLDLSS--NDLSGPLPQTI-NLPSIQVLDISSNSLNG-----------------SVPTSI-CKN 179 (1020)
Q Consensus 130 ---------~~l~~L~~L~L~~--n~l~~~~p~~~-~l~~L~~L~Ls~N~l~~-----------------~ip~~~-~~~ 179 (1020)
.....++.+.+.. |++++ +|..+ ++++|++|+|++|+++| .+|..+ |..
T Consensus 411 ~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~ 489 (876)
T 4ecn_A 411 NPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSN 489 (876)
T ss_dssp CTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGG
T ss_pred CccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhcc
Confidence 1122333444433 66666 55555 67777777777777776 266655 345
Q ss_pred CCcccEEEccCCCCCCCCCCccccccccccccccccc-ccc-ccchhhhhhc-------ccccccccccccCCCCCc--c
Q 035998 180 SSRIRVINLSVNYFSGTLSPGLGNCASLEHLCLGMND-LTG-GIADDIFQLQ-------KLRLLGLQDNQLSGKLSP--S 248 (1020)
Q Consensus 180 ~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~-l~~-~~~~~~~~l~-------~L~~L~L~~N~l~~~~~~--~ 248 (1020)
+++|++|+|++|++.+.+|..|+++++|++|+|++|+ +++ .+|..++.++ +|++|+|++|+++ .+|. .
T Consensus 490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~ 568 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASAS 568 (876)
T ss_dssp CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHH
T ss_pred CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhh
Confidence 6666666666666666666666666666666666666 665 5666666655 6666666666666 5555 6
Q ss_pred cccCCCccEEEccCCcCcccCcccccCCcccceeecccccccccCCCCCcCCcc-cccccccccccccccccCCCCCCC-
Q 035998 249 IADLSNLVRLDVSSNNFSGNIPDVFAGLGEFQYLVAHSNRFTGRIPHSLSNSPT-LNLLNLRNNSLDGSLLLNCPALTN- 326 (1020)
Q Consensus 249 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~l~~- 326 (1020)
+.++++|++|+|++|+++ .+| .|+.+++|+.|++++|+++ .+|..+.++++ |+.|+|++|.++ .+|..+..++.
T Consensus 569 l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~ 644 (876)
T 4ecn_A 569 LQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVY 644 (876)
T ss_dssp HTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSS
T ss_pred hhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccC
Confidence 666666666666666666 555 5666666666666666666 55666666666 666666666666 44455544433
Q ss_pred -cCEEEcCCCccCCCCCCCC---C--CCCCCCeEecCCCcccccCcccccCCCCCCeeeCCCCCCcchhhHHHHHhhhcc
Q 035998 327 -LTSLDLGTNKFNGPLPTNL---P--RCRKLKNINLARNNFSGQIPETYKNFESLSYLSLSNSSIYNLSSALQVLQQCRN 400 (1020)
Q Consensus 327 -L~~L~L~~N~l~~~~p~~l---~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~i~~l~~~~~~l~~l~~ 400 (1020)
|+.|+|++|++++.+|... . .+++|+.|+|++|+++...+..+..+++|+.|+|++|+|+.+|...
T Consensus 645 ~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~-------- 716 (876)
T 4ecn_A 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENS-------- 716 (876)
T ss_dssp CEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTS--------
T ss_pred CCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHH--------
Confidence 6666666666665444221 1 2235666666666666322223335566666666666655444320
Q ss_pred cchhhhhccccCCCCCCCccccccCceEEEecccccccccchhhhcCCCCcEEeccccccccccccccc--CcCcCcEEe
Q 035998 401 LTTLVLTLNFRNEKLPTDPRLHFANLKVLVIASCGLRGSIPQWLRGCSKLQLVDLSWNQLSGTIPVWFG--GFQDLFYLD 478 (1020)
Q Consensus 401 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~ 478 (1020)
+ . ..+..+.++++|+.|+|++|+|+ .+|..+. .+++|+.|+
T Consensus 717 -------------------~----------------~-~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~ 759 (876)
T 4ecn_A 717 -------------------L----------------K-PKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMD 759 (876)
T ss_dssp -------------------S----------------S-CTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEE
T ss_pred -------------------h----------------c-cccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEE
Confidence 0 0 00011233447777777777777 6666665 777777777
Q ss_pred CCCCcccccCCCCCCCCcccccccCcCCCCCCCcccceeecccccccccccccCCCCeeecccCccccCCCccccCCCcc
Q 035998 479 LSNNTFTGEIPKNLTGLPSLITRNISLEEPSPDFPFFMRRNVSARGLQYNQIWSFPPTIDLSLNRLDGSIWPEFGNLKKL 558 (1020)
Q Consensus 479 Ls~N~l~~~~p~~~~~l~~L~~l~~s~~~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~l~Ls~N~l~~~~~~~~~~L~~L 558 (1020)
|++|++++ +|..+.++++|+.++++ +|. ++++|++.+.+|..|+.+++|
T Consensus 760 Ls~N~L~~-lp~~l~~L~~L~~L~Ls----------------------~N~--------~ls~N~l~~~ip~~l~~L~~L 808 (876)
T 4ecn_A 760 VSYNCFSS-FPTQPLNSSQLKAFGIR----------------------HQR--------DAEGNRILRQWPTGITTCPSL 808 (876)
T ss_dssp CCSSCCSS-CCCGGGGCTTCCEEECC----------------------CCB--------CTTCCBCCCCCCTTGGGCSSC
T ss_pred eCCCCCCc-cchhhhcCCCCCEEECC----------------------CCC--------CcccccccccChHHHhcCCCC
Confidence 77777775 67667777666554443 221 467788999999999999999
Q ss_pred eEEEecCCcceeccCccccCCCcccEEEccCCcccccCCcccccccccccccccccccc
Q 035998 559 HVFDLKHNNLSGPIPSELTGMTSLETLDLSYNNLSGAIPISLEKLSFLSKFSVANNHLT 617 (1020)
Q Consensus 559 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~ 617 (1020)
+.|+|++|+| +.+|..+. ++|+.|||++|++....+..+.....+..+.|++|++.
T Consensus 809 ~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 809 IQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp CEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred CEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence 9999999999 68998876 69999999999999877788888888888888888765
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.9e-56 Score=543.41 Aligned_cols=506 Identities=21% Similarity=0.232 Sum_probs=403.3
Q ss_pred ceEEcCCCCCCCCCCCCCCCceEEEecCCCcccccccccccCCCCCcEEecCCCCCCCCCCccccCCCCCCeeeccCCCC
Q 035998 66 VGITCNSSSSLGLNDSIGSGRVTGLFLYKRRLKGKLSESLGNLVQLRFLNLSHNLLKGTVPVSLVNLPNLEVLDLSSNDL 145 (1020)
Q Consensus 66 ~gv~C~~~~~~~~~~~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 145 (1020)
..|.|+....+.+|.+.+ .+++.|+|++|.+++..+.+|+++++|++|+|++|.+++..|.+|+++++|++|+|++|++
T Consensus 14 ~~~~c~~~~l~~ip~~~~-~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l 92 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDIP-SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92 (606)
T ss_dssp TEEECTTSCCSSCCTTSC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CceEccCCCcccCCCCCC-CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcc
Confidence 479999999999998876 7999999999999999888999999999999999999988899999999999999999999
Q ss_pred CCCCCCcc-CCCCcceeeeccCccCCCCCccccccCCcccEEEccCCCCCC-CCCCccccccccccccccccccccccch
Q 035998 146 SGPLPQTI-NLPSIQVLDISSNSLNGSVPTSICKNSSRIRVINLSVNYFSG-TLSPGLGNCASLEHLCLGMNDLTGGIAD 223 (1020)
Q Consensus 146 ~~~~p~~~-~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~-~~~~~l~~l~~L~~L~L~~N~l~~~~~~ 223 (1020)
++.+|..+ ++++|++|+|++|+++ .+|...+..+++|++|+|++|.+.+ .+|..|+++++|++|+|++|++++..+.
T Consensus 93 ~~~~p~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~ 171 (606)
T 3vq2_A 93 QSFSPGSFSGLTSLENLVAVETKLA-SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN 171 (606)
T ss_dssp CCCCTTSSTTCTTCCEEECTTSCCC-CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT
T ss_pred cccChhhcCCcccCCEEEccCCccc-cccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChh
Confidence 99989888 8999999999999998 4554446789999999999999986 5799999999999999999999998899
Q ss_pred hhhhhcccc----cccccccccCCCCCcccccCCCccEEEccCCcCc-ccCcccccCCcccceeec--------------
Q 035998 224 DIFQLQKLR----LLGLQDNQLSGKLSPSIADLSNLVRLDVSSNNFS-GNIPDVFAGLGEFQYLVA-------------- 284 (1020)
Q Consensus 224 ~~~~l~~L~----~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L-------------- 284 (1020)
.+..+++|+ +|++++|++++..+..+... +|++|++++|.++ +..|..+.++++|+.+.+
T Consensus 172 ~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~ 250 (606)
T 3vq2_A 172 DLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250 (606)
T ss_dssp TTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred hhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCccccc
Confidence 999998876 79999999997666666555 9999999999987 456777777777776665
Q ss_pred -------------------ccccccccCCCCCcCCcccccccccccccccccccCCCCCCCcCEEEcCCCccCCCCCCCC
Q 035998 285 -------------------HSNRFTGRIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNKFNGPLPTNL 345 (1020)
Q Consensus 285 -------------------~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l 345 (1020)
..|.+++.+|. +..+++|+.|++++|.+... + .+..+++|++|++++|++ +.+| .+
T Consensus 251 ~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l-~-~l~~~~~L~~L~l~~n~l-~~lp-~~ 325 (606)
T 3vq2_A 251 EPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYL-E-DVPKHFKWQSLSIIRCQL-KQFP-TL 325 (606)
T ss_dssp CGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCC-C-CCCTTCCCSEEEEESCCC-SSCC-CC
T ss_pred ChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchhh-h-hccccccCCEEEcccccC-cccc-cC
Confidence 56677777776 88888888888888888754 3 777888888888888888 4777 45
Q ss_pred CCCCCCCeEecCCCcccccCcccccCCCCCCeeeCCCCCCcchhhHHHHHhhhcccchhhhhccccCCCCCCCccccccC
Q 035998 346 PRCRKLKNINLARNNFSGQIPETYKNFESLSYLSLSNSSIYNLSSALQVLQQCRNLTTLVLTLNFRNEKLPTDPRLHFAN 425 (1020)
Q Consensus 346 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~i~~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 425 (1020)
.+++|++|++++|+..+.. .+..+++|++|++++|+++.++.....+..+++|+.|+++.|.+.. ++ ..+..+++
T Consensus 326 -~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~-~~~~~l~~ 400 (606)
T 3vq2_A 326 -DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MS-ANFMGLEE 400 (606)
T ss_dssp -CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-EC-CCCTTCTT
T ss_pred -CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-ch-hhccCCCC
Confidence 8888888888888665444 5678888888888888887764223346677777777777775443 22 33445667
Q ss_pred ceEEEecccccccccc-hhhhcCCCCcEEecccccccccccccccCcCcCcEEeCCCCcccc-cCCCCCCCCcccccccC
Q 035998 426 LKVLVIASCGLRGSIP-QWLRGCSKLQLVDLSWNQLSGTIPVWFGGFQDLFYLDLSNNTFTG-EIPKNLTGLPSLITRNI 503 (1020)
Q Consensus 426 L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~l~~ 503 (1020)
|+.|++++|.+.+..| ..+..+++|+.|++++|++++..|..|..+++|++|+|++|++++ .+|..++++++|
T Consensus 401 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L----- 475 (606)
T 3vq2_A 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL----- 475 (606)
T ss_dssp CCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC-----
T ss_pred CCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCC-----
Confidence 7777777777776666 567777777777777777776677777777777777777777776 356666666665
Q ss_pred cCCCCCCCcccceeecccccccccccccCCCCeeecccCccccCCCccccCCCcceEEEecCCcceeccCccccCCCccc
Q 035998 504 SLEEPSPDFPFFMRRNVSARGLQYNQIWSFPPTIDLSLNRLDGSIWPEFGNLKKLHVFDLKHNNLSGPIPSELTGMTSLE 583 (1020)
Q Consensus 504 s~~~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~l~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 583 (1020)
+.|+|++|++++..|..|+.+++|++|+|++|++++.+|..|+++++|+
T Consensus 476 -------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 524 (606)
T 3vq2_A 476 -------------------------------TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLS 524 (606)
T ss_dssp -------------------------------CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCC
T ss_pred -------------------------------CEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCC
Confidence 3566777777777777777777777777777777776677777777777
Q ss_pred EEEccCCcccccCCccccccc-cccccccccccccccCC
Q 035998 584 TLDLSYNNLSGAIPISLEKLS-FLSKFSVANNHLTGRIP 621 (1020)
Q Consensus 584 ~L~Ls~N~l~g~ip~~l~~l~-~L~~l~ls~N~l~g~~p 621 (1020)
+|||++|+|+ .+|..+..++ +|+.|++++|++.+..+
T Consensus 525 ~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 525 TLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp EEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred EEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 7777777777 5666677775 47777777777776554
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=8.2e-56 Score=557.40 Aligned_cols=504 Identities=22% Similarity=0.212 Sum_probs=364.6
Q ss_pred CcCceEEcCCCCCCCCCCCCCCCceEEEecCCCcccccccccccCCCCCcEEecCCCCCCCCC-CccccCCCCCCeeecc
Q 035998 63 CHWVGITCNSSSSLGLNDSIGSGRVTGLFLYKRRLKGKLSESLGNLVQLRFLNLSHNLLKGTV-PVSLVNLPNLEVLDLS 141 (1020)
Q Consensus 63 C~w~gv~C~~~~~~~~~~~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~ 141 (1020)
|.-.-+.|+..+.+.||. . ..+++.|+|++|.+++..+.+|+++++|++|+|++|.+.+.+ |.+|+++++|++|+|+
T Consensus 4 ~~~~~~dcs~~~L~~vP~-l-p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 4 FDGRIAFYRFCNLTQVPQ-V-LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp TTTEEEEESCCCSSCCCS-S-CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred EeceEEEccCCCCCCCCC-C-CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 344568899989999998 4 469999999999999999999999999999999999777677 7889999999999999
Q ss_pred CCCCCCCCCCcc-CCCCcceeeeccCccCCCCCcc-ccccCCcccEEEccCCCCCCCCC-Cccccccccccccccccccc
Q 035998 142 SNDLSGPLPQTI-NLPSIQVLDISSNSLNGSVPTS-ICKNSSRIRVINLSVNYFSGTLS-PGLGNCASLEHLCLGMNDLT 218 (1020)
Q Consensus 142 ~n~l~~~~p~~~-~l~~L~~L~Ls~N~l~~~ip~~-~~~~~~~L~~L~L~~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~ 218 (1020)
+|.|++..|..+ ++++|++|+|++|.+++.+|.. .+..+++|++|+|++|.+++..+ ..|+++++|++|+|++|.++
T Consensus 82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 999999999988 8999999999999999866654 56889999999999999998765 57999999999999999999
Q ss_pred cccchhhhhh--cccccccccccccCCCCCcccccCCC------ccEEEccCCcCcccCcccccCC--------------
Q 035998 219 GGIADDIFQL--QKLRLLGLQDNQLSGKLSPSIADLSN------LVRLDVSSNNFSGNIPDVFAGL-------------- 276 (1020)
Q Consensus 219 ~~~~~~~~~l--~~L~~L~L~~N~l~~~~~~~~~~l~~------L~~L~Ls~N~l~~~~p~~~~~l-------------- 276 (1020)
+..+..+..+ ++|+.|++++|.+++..|..+..+.+ |++|++++|.+++..|..+...
T Consensus 162 ~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~ 241 (844)
T 3j0a_A 162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241 (844)
T ss_dssp CCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred eeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc
Confidence 9999999988 89999999999999988888777766 9999999999887777665432
Q ss_pred ------------------------cccceeecccccccccCCCCCcCCcccccccccccccccccccCCCCCCCcCEEEc
Q 035998 277 ------------------------GEFQYLVAHSNRFTGRIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLTSLDL 332 (1020)
Q Consensus 277 ------------------------~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 332 (1020)
++|+.|++++|.+++..|..|..+++|+.|+|++|++++..+..|..+++|++|+|
T Consensus 242 ~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 321 (844)
T 3j0a_A 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321 (844)
T ss_dssp CCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEE
T ss_pred cccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEEC
Confidence 35666666666666666666666666666666666666655556666666666666
Q ss_pred CCCccCCCCCCCCCCCCCCCeEecCCCcccccCcccccCCCCCCeeeCCCCCCcchhhHHHHHhhhcccchhhhhccccC
Q 035998 333 GTNKFNGPLPTNLPRCRKLKNINLARNNFSGQIPETYKNFESLSYLSLSNSSIYNLSSALQVLQQCRNLTTLVLTLNFRN 412 (1020)
Q Consensus 333 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~i~~l~~~~~~l~~l~~L~~L~l~~n~~~ 412 (1020)
++|++++..|..|..+++|+.|++++|++++..+..|..+++|++|+|++|.++.++. +++|+.|+++.|.+.
T Consensus 322 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~-------~~~L~~L~l~~N~l~ 394 (844)
T 3j0a_A 322 SYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF-------IPSIPDIFLSGNKLV 394 (844)
T ss_dssp ESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS-------CCSCSEEEEESCCCC
T ss_pred CCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC-------CCCcchhccCCCCcc
Confidence 6666665556666666666666666666665555556666666666666666554432 445555555555443
Q ss_pred CCCCCCccccccCceEEEeccccccccc-chhhhcCCCCcEEecccccccccccc-cccCcCcCcEEeCCCCccc-----
Q 035998 413 EKLPTDPRLHFANLKVLVIASCGLRGSI-PQWLRGCSKLQLVDLSWNQLSGTIPV-WFGGFQDLFYLDLSNNTFT----- 485 (1020)
Q Consensus 413 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~----- 485 (1020)
.++. ...+++.|++++|.+.+.. +..+.++++|+.|+|++|++++..+. .+..+++|+.|+|++|.++
T Consensus 395 -~l~~----~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~ 469 (844)
T 3j0a_A 395 -TLPK----INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWET 469 (844)
T ss_dssp -CCCC----CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCS
T ss_pred -cccc----cccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCcccccccc
Confidence 1111 1234555555555555422 22234555555555555555543322 2344555555555555554
Q ss_pred ccCCCCCCCCcccccccCcCCCCCCCcccceeecccccccccccccCCCCeeecccCccccCCCccccCCCcceEEEecC
Q 035998 486 GEIPKNLTGLPSLITRNISLEEPSPDFPFFMRRNVSARGLQYNQIWSFPPTIDLSLNRLDGSIWPEFGNLKKLHVFDLKH 565 (1020)
Q Consensus 486 ~~~p~~~~~l~~L~~l~~s~~~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~l~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~ 565 (1020)
+..|..+.++++| +.|+|++|+|++..|..|+.+++|+.|+|++
T Consensus 470 ~~~~~~~~~l~~L------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 513 (844)
T 3j0a_A 470 ELCWDVFEGLSHL------------------------------------QVLYLNHNYLNSLPPGVFSHLTALRGLSLNS 513 (844)
T ss_dssp CCCSSCSSCBCCE------------------------------------ECCCCCHHHHTTCCTTSSSSCCSCSEEEEES
T ss_pred ccchhhhcCcccc------------------------------------cEEECCCCcccccChhHccchhhhheeECCC
Confidence 2222334444433 3567778888877777788888888888888
Q ss_pred CcceeccCccccCCCcccEEEccCCcccccCCccccccccccccccccccccccCC
Q 035998 566 NNLSGPIPSELTGMTSLETLDLSYNNLSGAIPISLEKLSFLSKFSVANNHLTGRIP 621 (1020)
Q Consensus 566 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~~p 621 (1020)
|+|++..|..+. ++|+.|||++|+|++.+|..+ .+|+.|++++|++....+
T Consensus 514 N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 514 NRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECE 564 (844)
T ss_dssp CCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSS
T ss_pred CCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccc
Confidence 888765555554 778888888888888777665 367778888888876554
No 9
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.3e-55 Score=545.02 Aligned_cols=549 Identities=21% Similarity=0.220 Sum_probs=467.0
Q ss_pred EEecCCCcccccccccccCCCCCcEEecCCCCCCCCCCccccCCCCCCeeeccCCCCCCCCCCcc-CCCCcceeeeccCc
Q 035998 89 GLFLYKRRLKGKLSESLGNLVQLRFLNLSHNLLKGTVPVSLVNLPNLEVLDLSSNDLSGPLPQTI-NLPSIQVLDISSNS 167 (1020)
Q Consensus 89 ~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-~l~~L~~L~Ls~N~ 167 (1020)
.++.++++++ .+|..+. +++++|+|++|++++..+..|+++++|++|+|++|.+++.+|..+ ++++|++|+|++|+
T Consensus 8 ~~~cs~~~L~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 8 VADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp EEECCSSCCS-SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred eeECCCCCcc-ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence 4788888887 4776665 799999999999998888889999999999999999999999988 89999999999999
Q ss_pred cCCCCCccccccCCcccEEEccCCCCCCCCCCccccccccccccccccccccccchhhhhhcccccccccccccCCCCCc
Q 035998 168 LNGSVPTSICKNSSRIRVINLSVNYFSGTLSPGLGNCASLEHLCLGMNDLTGGIADDIFQLQKLRLLGLQDNQLSGKLSP 247 (1020)
Q Consensus 168 l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 247 (1020)
++ .+|...+..+++|++|+|++|++++..|..|+++++|++|+|++|.+++..|..+.++++|++|++++|++++..+.
T Consensus 85 l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 163 (680)
T 1ziw_A 85 LS-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE 163 (680)
T ss_dssp CC-CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHH
T ss_pred cC-ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHH
Confidence 98 78887778899999999999999988888999999999999999999999999999999999999999999987777
Q ss_pred ccc--cCCCccEEEccCCcCcccCcccccCCcccceeecccccccccCCCCCc---CCcccccccccccccccccccCCC
Q 035998 248 SIA--DLSNLVRLDVSSNNFSGNIPDVFAGLGEFQYLVAHSNRFTGRIPHSLS---NSPTLNLLNLRNNSLDGSLLLNCP 322 (1020)
Q Consensus 248 ~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~---~l~~L~~L~L~~N~l~~~~~~~~~ 322 (1020)
.+. .+++|++|++++|++++..|..|..+.+|+.|++.+|.+.+.....+. ..++|+.|++++|.+++..+..+.
T Consensus 164 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~ 243 (680)
T 1ziw_A 164 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243 (680)
T ss_dssp HHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG
T ss_pred HhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh
Confidence 665 458999999999999999999999999999999999988643322221 347899999999999999999998
Q ss_pred CCCC--cCEEEcCCCccCCCCCCCCCCCCCCCeEecCCCcccccCcccccCCCCCCeeeCCCCCCc------chhh-HHH
Q 035998 323 ALTN--LTSLDLGTNKFNGPLPTNLPRCRKLKNINLARNNFSGQIPETYKNFESLSYLSLSNSSIY------NLSS-ALQ 393 (1020)
Q Consensus 323 ~l~~--L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~i~------~l~~-~~~ 393 (1020)
.++. |++|+|++|++++..|..|..+++|++|++++|++++..|..|..+++|++|++++|... .+|. .-.
T Consensus 244 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~ 323 (680)
T 1ziw_A 244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323 (680)
T ss_dssp GGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTT
T ss_pred ccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChh
Confidence 8765 999999999999999999999999999999999999999999999999999999987543 2221 001
Q ss_pred HHhhhcccchhhhhccccCCCCCCCccccccCceEEEecccccccc--cchhhhcC--CCCcEEeccccccccccccccc
Q 035998 394 VLQQCRNLTTLVLTLNFRNEKLPTDPRLHFANLKVLVIASCGLRGS--IPQWLRGC--SKLQLVDLSWNQLSGTIPVWFG 469 (1020)
Q Consensus 394 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~p~~l~~l--~~L~~L~Ls~N~l~~~~p~~~~ 469 (1020)
.+..+++|+.|+++.|.+.. ++...+..+++|+.|++++|.+... .+..+..+ ++|+.|++++|++++..|.+|.
T Consensus 324 ~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~ 402 (680)
T 1ziw_A 324 SFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS 402 (680)
T ss_dssp TTTTCTTCCEEECCSCCBCC-CCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTT
T ss_pred hcccCCCCCEEECCCCccCC-CChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhh
Confidence 46788999999999997765 4445567889999999999986432 23344443 5899999999999999999999
Q ss_pred CcCcCcEEeCCCCcccccCC-CCCCCCcccccccCcCCCCCCC--cccceeecccccccccccccC------------CC
Q 035998 470 GFQDLFYLDLSNNTFTGEIP-KNLTGLPSLITRNISLEEPSPD--FPFFMRRNVSARGLQYNQIWS------------FP 534 (1020)
Q Consensus 470 ~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~l~~s~~~~~~~--~~~~~~~~~~~~~l~~n~~~~------------~~ 534 (1020)
.+++|++|+|++|++++.+| ..+.++++|+.++++.+..... ..+.....++.+.++.|.+.. -.
T Consensus 403 ~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L 482 (680)
T 1ziw_A 403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL 482 (680)
T ss_dssp TCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTC
T ss_pred CCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCC
Confidence 99999999999999998776 6899999999999987764322 223445667788888876542 12
Q ss_pred CeeecccCccccCCCccccCCCcceEEEecCCcceecc----C----ccccCCCcccEEEccCCcccccCCccccccccc
Q 035998 535 PTIDLSLNRLDGSIWPEFGNLKKLHVFDLKHNNLSGPI----P----SELTGMTSLETLDLSYNNLSGAIPISLEKLSFL 606 (1020)
Q Consensus 535 ~~l~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~~----p----~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L 606 (1020)
+.|+|++|+|++..+..|+++++|++|+|++|++++.. | ..|+++++|++|+|++|++++..+..|.++++|
T Consensus 483 ~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L 562 (680)
T 1ziw_A 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL 562 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCc
Confidence 57999999999988889999999999999999998642 2 248999999999999999994444569999999
Q ss_pred cccccccccccccCCCC-CCCCCcCCccccCCCCCCC
Q 035998 607 SKFSVANNHLTGRIPSG-GQFQTFPNSSFDGNNLCGE 642 (1020)
Q Consensus 607 ~~l~ls~N~l~g~~p~~-~~~~~~~~~~~~~n~l~~~ 642 (1020)
+.|++++|++++.+|.. ..+..+..+.+.+|.+.+.
T Consensus 563 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~ 599 (680)
T 1ziw_A 563 KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV 599 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBC
T ss_pred ceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCcc
Confidence 99999999999766653 4567788888899987654
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.3e-54 Score=528.76 Aligned_cols=507 Identities=21% Similarity=0.220 Sum_probs=428.8
Q ss_pred EEecCCCcccccccccccCCCCCcEEecCCCCCCCCCCccccCCCCCCeeeccCCCCCCCCCCcc-CCCCcceeeeccCc
Q 035998 89 GLFLYKRRLKGKLSESLGNLVQLRFLNLSHNLLKGTVPVSLVNLPNLEVLDLSSNDLSGPLPQTI-NLPSIQVLDISSNS 167 (1020)
Q Consensus 89 ~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-~l~~L~~L~Ls~N~ 167 (1020)
.++..+.+++ .+|..+.. ++++|+|++|.+++..|.+|+++++|++|+|++|++++..|..+ ++++|++|+|++|+
T Consensus 16 ~~~c~~~~l~-~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 92 (606)
T 3t6q_A 16 TYNCENLGLN-EIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92 (606)
T ss_dssp EEECTTSCCS-SCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEECCCCCcc-cCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc
Confidence 4677777776 56766654 79999999999998889999999999999999999999989888 89999999999999
Q ss_pred cCCCCCccccccCCcccEEEccCCCCCCCCCCccccccccccccccccccccccchhhhhhcccccccccccccCCCCCc
Q 035998 168 LNGSVPTSICKNSSRIRVINLSVNYFSGTLSPGLGNCASLEHLCLGMNDLTGGIADDIFQLQKLRLLGLQDNQLSGKLSP 247 (1020)
Q Consensus 168 l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 247 (1020)
+++..|.. +..+++|++|+|++|++++..+..++++++|++|+|++|++++.....+..+++|++|++++|++++..|.
T Consensus 93 l~~~~~~~-~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 171 (606)
T 3t6q_A 93 LIFMAETA-LSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE 171 (606)
T ss_dssp CSEECTTT-TSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHH
T ss_pred ccccChhh-hcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChh
Confidence 98555554 56899999999999999987788899999999999999999975555566699999999999999988888
Q ss_pred ccccCCCcc--EEEccCCcCcccCcccccCCcccceeecccccccccCCCCCcCCcccccccccccccc-----cccccC
Q 035998 248 SIADLSNLV--RLDVSSNNFSGNIPDVFAGLGEFQYLVAHSNRFTGRIPHSLSNSPTLNLLNLRNNSLD-----GSLLLN 320 (1020)
Q Consensus 248 ~~~~l~~L~--~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-----~~~~~~ 320 (1020)
.++.+++|+ +|++++|.+++..|..|.. .+|+.|++++|.. .+..+..+..+....+..+.+. ...+..
T Consensus 172 ~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~ 247 (606)
T 3t6q_A 172 DMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247 (606)
T ss_dssp HHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGG
T ss_pred hhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCchh---HHHHhhhccccchhheechhhccccccccChhH
Confidence 899999999 8999999999888887765 5899999998862 2233333333332222222111 111222
Q ss_pred CCCCC--CcCEEEcCCCccCCCCCCCCCCCCCCCeEecCCCcccccCcccccCCCCCCeeeCCCCCCcchhhHHHHHhhh
Q 035998 321 CPALT--NLTSLDLGTNKFNGPLPTNLPRCRKLKNINLARNNFSGQIPETYKNFESLSYLSLSNSSIYNLSSALQVLQQC 398 (1020)
Q Consensus 321 ~~~l~--~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~i~~l~~~~~~l~~l 398 (1020)
+..+. +|+.|++++|++++..+..|..+++|++|++++|+++ .+|..+..+++|++|++++|++..++. ..+..+
T Consensus 248 ~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~l 324 (606)
T 3t6q_A 248 FEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQ--ISASNF 324 (606)
T ss_dssp GGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGG--GCGGGC
T ss_pred hchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCch--hhhhcc
Confidence 22222 7999999999999888888999999999999999999 788899999999999999999998765 357889
Q ss_pred cccchhhhhccccCCCCCCCccccccCceEEEeccccccccc--chhhhcCCCCcEEecccccccccccccccCcCcCcE
Q 035998 399 RNLTTLVLTLNFRNEKLPTDPRLHFANLKVLVIASCGLRGSI--PQWLRGCSKLQLVDLSWNQLSGTIPVWFGGFQDLFY 476 (1020)
Q Consensus 399 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 476 (1020)
++|+.|+++.|.....++...+..+++|+.|++++|.+.+.. |..+.++++|++|++++|++++..|..|..+++|++
T Consensus 325 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 404 (606)
T 3t6q_A 325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404 (606)
T ss_dssp TTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSE
T ss_pred CcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCe
Confidence 999999999998877777777888999999999999999877 888999999999999999999899999999999999
Q ss_pred EeCCCCcccccCCCC-CCCCcccccccCcCCCCCCCcccceeecccccccccccccCCCCeeecccCccccCCCccccCC
Q 035998 477 LDLSNNTFTGEIPKN-LTGLPSLITRNISLEEPSPDFPFFMRRNVSARGLQYNQIWSFPPTIDLSLNRLDGSIWPEFGNL 555 (1020)
Q Consensus 477 L~Ls~N~l~~~~p~~-~~~l~~L~~l~~s~~~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~l~Ls~N~l~~~~~~~~~~L 555 (1020)
|+|++|++++..|.. +.++++| +.|++++|++++..|..|+.+
T Consensus 405 L~l~~n~l~~~~~~~~~~~l~~L------------------------------------~~L~l~~n~l~~~~~~~~~~l 448 (606)
T 3t6q_A 405 LDLAFTRLKVKDAQSPFQNLHLL------------------------------------KVLNLSHSLLDISSEQLFDGL 448 (606)
T ss_dssp EECTTCCEECCTTCCTTTTCTTC------------------------------------CEEECTTCCCBTTCTTTTTTC
T ss_pred EECCCCcCCCcccchhhhCcccC------------------------------------CEEECCCCccCCcCHHHHhCC
Confidence 999999999877654 8888777 468889999999999999999
Q ss_pred CcceEEEecCCcceec---cCccccCCCcccEEEccCCcccccCCccccccccccccccccccccccCCCC-CCCCCcCC
Q 035998 556 KKLHVFDLKHNNLSGP---IPSELTGMTSLETLDLSYNNLSGAIPISLEKLSFLSKFSVANNHLTGRIPSG-GQFQTFPN 631 (1020)
Q Consensus 556 ~~L~~L~Ls~N~l~~~---~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~~p~~-~~~~~~~~ 631 (1020)
++|++|+|++|++++. .+..+..+++|++|+|++|++++.+|..+.++++|+.|++++|++++.+|.. ..+..+ .
T Consensus 449 ~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~ 527 (606)
T 3t6q_A 449 PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-Y 527 (606)
T ss_dssp TTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-E
T ss_pred CCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-E
Confidence 9999999999999872 3467999999999999999999999999999999999999999999988853 445566 7
Q ss_pred ccccCCCCCCCC
Q 035998 632 SSFDGNNLCGEH 643 (1020)
Q Consensus 632 ~~~~~n~l~~~~ 643 (1020)
..+.+|.+.+.+
T Consensus 528 L~L~~N~l~~~~ 539 (606)
T 3t6q_A 528 LNLASNHISIIL 539 (606)
T ss_dssp EECCSSCCCCCC
T ss_pred EECcCCcccccC
Confidence 778888877643
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.9e-53 Score=516.98 Aligned_cols=523 Identities=19% Similarity=0.192 Sum_probs=408.7
Q ss_pred EEecCCCcccccccccccCCCCCcEEecCCCCCCCCCCccccCCCCCCeeeccCCCCCCCCCCcc-CCCCcceeeeccCc
Q 035998 89 GLFLYKRRLKGKLSESLGNLVQLRFLNLSHNLLKGTVPVSLVNLPNLEVLDLSSNDLSGPLPQTI-NLPSIQVLDISSNS 167 (1020)
Q Consensus 89 ~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-~l~~L~~L~Ls~N~ 167 (1020)
.++.++++++ .+|..+. ++|++|+|++|.+++..|..|+++++|++|+|++|.+++..|..+ ++++|++|+|++|+
T Consensus 15 ~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~ 91 (606)
T 3vq2_A 15 TYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91 (606)
T ss_dssp EEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred ceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc
Confidence 4788888887 4676665 899999999999998888899999999999999999999989888 89999999999999
Q ss_pred cCCCCCccccccCCcccEEEccCCCCCCCCCCcccccccccccccccccccc-ccchhhhhhcccccccccccccCCCCC
Q 035998 168 LNGSVPTSICKNSSRIRVINLSVNYFSGTLSPGLGNCASLEHLCLGMNDLTG-GIADDIFQLQKLRLLGLQDNQLSGKLS 246 (1020)
Q Consensus 168 l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~ 246 (1020)
+++..|.. +..+++|++|+|++|.+++..+..|+++++|++|+|++|.+++ .+|..+.++++|++|++++|++++..|
T Consensus 92 l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~ 170 (606)
T 3vq2_A 92 IQSFSPGS-FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 170 (606)
T ss_dssp CCCCCTTS-STTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT
T ss_pred ccccChhh-cCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecCh
Confidence 99555655 4789999999999999998888899999999999999999986 579999999999999999999998888
Q ss_pred cccccCCCcc----EEEccCCcCcccCcccccCCcccceeeccccccc-ccCCCCCcCCccccccccccccccccc----
Q 035998 247 PSIADLSNLV----RLDVSSNNFSGNIPDVFAGLGEFQYLVAHSNRFT-GRIPHSLSNSPTLNLLNLRNNSLDGSL---- 317 (1020)
Q Consensus 247 ~~~~~l~~L~----~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~---- 317 (1020)
..++.+++|+ +|++++|.+++..+..+... +|+.|++++|.++ +..|..+.+++.|+.+++..+.+.+..
T Consensus 171 ~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~ 249 (606)
T 3vq2_A 171 NDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249 (606)
T ss_dssp TTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred hhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccc
Confidence 8888877665 89999999998888777766 8999999999987 456777888888888887655443211
Q ss_pred --ccCCCCCC--CcCEEEc-CCCccCCCCCCCCCCCCCCCeEecCCCcccccCcccccCCCCCCeeeCCCCCCcchhhHH
Q 035998 318 --LLNCPALT--NLTSLDL-GTNKFNGPLPTNLPRCRKLKNINLARNNFSGQIPETYKNFESLSYLSLSNSSIYNLSSAL 392 (1020)
Q Consensus 318 --~~~~~~l~--~L~~L~L-~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~i~~l~~~~ 392 (1020)
+..+..+. .++.+++ ..|.+.+.+|. +..+++|+.|++++|.+. .+| .+..+++|++|++++|.+..+|.
T Consensus 250 ~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l~~lp~-- 324 (606)
T 3vq2_A 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQLKQFPT-- 324 (606)
T ss_dssp CCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCCSSCCC--
T ss_pred cChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccCccccc--
Confidence 11111111 3555555 56666666665 667777777777777775 344 66667777777777777766662
Q ss_pred HHHhhhcccchhhhhccccCCCCCCCccccccCceEEEecccccccc--cchhhhcCCCCcEEecccccccccccccccC
Q 035998 393 QVLQQCRNLTTLVLTLNFRNEKLPTDPRLHFANLKVLVIASCGLRGS--IPQWLRGCSKLQLVDLSWNQLSGTIPVWFGG 470 (1020)
Q Consensus 393 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~ 470 (1020)
+ .+++|+.|+++.|...... ....+++|+.|++++|.+.+. +|..+..+++|++|++++|+++ .+|..|..
T Consensus 325 --~-~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~ 397 (606)
T 3vq2_A 325 --L-DLPFLKSLTLTMNKGSISF---KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMG 397 (606)
T ss_dssp --C-CCSSCCEEEEESCSSCEEC---CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTT
T ss_pred --C-CCCccceeeccCCcCccch---hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccC
Confidence 2 6667777777766333222 344667777888887777765 3777777788888888888777 46677777
Q ss_pred cCcCcEEeCCCCcccccCC-CCCCCCcccccccCcCCCCCCCcccceeecccccccccccccCCCCeeecccCcccc-CC
Q 035998 471 FQDLFYLDLSNNTFTGEIP-KNLTGLPSLITRNISLEEPSPDFPFFMRRNVSARGLQYNQIWSFPPTIDLSLNRLDG-SI 548 (1020)
Q Consensus 471 l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~l~~s~~~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~l~Ls~N~l~~-~~ 548 (1020)
+++|++|++++|++++.+| ..+.++++|+.++++.+......+.... . ..-.+.|++++|++++ .+
T Consensus 398 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----------~-l~~L~~L~l~~n~l~~~~~ 465 (606)
T 3vq2_A 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL-----------G-LTSLNTLKMAGNSFKDNTL 465 (606)
T ss_dssp CTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTT-----------T-CTTCCEEECTTCEEGGGEE
T ss_pred CCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhc-----------C-CCCCCEEECCCCcCCCcch
Confidence 7888888888888777766 5777777777777766554332221100 0 0112578999999998 47
Q ss_pred CccccCCCcceEEEecCCcceeccCccccCCCcccEEEccCCcccccCCccccccccccccccccccccccCCCCCCCC-
Q 035998 549 WPEFGNLKKLHVFDLKHNNLSGPIPSELTGMTSLETLDLSYNNLSGAIPISLEKLSFLSKFSVANNHLTGRIPSGGQFQ- 627 (1020)
Q Consensus 549 ~~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~~p~~~~~~- 627 (1020)
|..|+.+++|++|+|++|++++..|..|+++++|++|+|++|++++.+|..+.++++|+.|++++|+++..++....+.
T Consensus 466 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~ 545 (606)
T 3vq2_A 466 SNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPK 545 (606)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCT
T ss_pred HHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcc
Confidence 8899999999999999999999999999999999999999999999999999999999999999999995444333443
Q ss_pred CcCCccccCCCCC
Q 035998 628 TFPNSSFDGNNLC 640 (1020)
Q Consensus 628 ~~~~~~~~~n~l~ 640 (1020)
++....+.+|++.
T Consensus 546 ~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 546 SLAFFNLTNNSVA 558 (606)
T ss_dssp TCCEEECCSCCCC
T ss_pred cCcEEEccCCCcc
Confidence 4677888999753
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=6.7e-52 Score=521.82 Aligned_cols=494 Identities=21% Similarity=0.237 Sum_probs=381.6
Q ss_pred EEecCCCcccccccccccCCCCCcEEecCCCCCCCCCCccccCCCCCCeeeccCCCCCCCC-CCcc-CCCCcceeeeccC
Q 035998 89 GLFLYKRRLKGKLSESLGNLVQLRFLNLSHNLLKGTVPVSLVNLPNLEVLDLSSNDLSGPL-PQTI-NLPSIQVLDISSN 166 (1020)
Q Consensus 89 ~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~~-~l~~L~~L~Ls~N 166 (1020)
.++.++++++. +|. -.++|++|+|++|.+++..|..|.++++|++|+|++|.+.+.+ |..+ ++++|++|+|++|
T Consensus 8 ~~dcs~~~L~~-vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 8 IAFYRFCNLTQ-VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEESCCCSSC-CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred EEEccCCCCCC-CCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 46677888875 554 4589999999999999888999999999999999999776655 6677 8999999999999
Q ss_pred ccCCCCCccccccCCcccEEEccCCCCCCCCCCc--cccccccccccccccccccccc-hhhhhhcccccccccccccCC
Q 035998 167 SLNGSVPTSICKNSSRIRVINLSVNYFSGTLSPG--LGNCASLEHLCLGMNDLTGGIA-DDIFQLQKLRLLGLQDNQLSG 243 (1020)
Q Consensus 167 ~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~--l~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~ 243 (1020)
.+++..|.. +..+++|++|+|++|.+++.+|.. |+++++|++|+|++|.+++..+ ..|.++++|++|+|++|++++
T Consensus 84 ~l~~~~p~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 84 KIYFLHPDA-FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCEECTTS-SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred cCcccCHhH-ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 999555555 468999999999999999877665 9999999999999999997755 679999999999999999999
Q ss_pred CCCcccccC--CCccEEEccCCcCcccCcccccCCcc------cceeecccccccccCCCCCcCC---------------
Q 035998 244 KLSPSIADL--SNLVRLDVSSNNFSGNIPDVFAGLGE------FQYLVAHSNRFTGRIPHSLSNS--------------- 300 (1020)
Q Consensus 244 ~~~~~~~~l--~~L~~L~Ls~N~l~~~~p~~~~~l~~------L~~L~L~~N~l~~~~p~~~~~l--------------- 300 (1020)
..+..+..+ ++|+.|+++.|.+++..|..++.+.+ |+.|++++|++++..+..+...
T Consensus 163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~ 242 (844)
T 3j0a_A 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242 (844)
T ss_dssp CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence 999999988 89999999999999998888777665 9999999999887776655432
Q ss_pred -----------------------cccccccccccccccccccCCCCCCCcCEEEcCCCccCCCCCCCCCCCCCCCeEecC
Q 035998 301 -----------------------PTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNKFNGPLPTNLPRCRKLKNINLA 357 (1020)
Q Consensus 301 -----------------------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 357 (1020)
++|+.|++++|.+.+..+..|..+++|+.|+|++|++++..|..|..+++|++|+|+
T Consensus 243 ~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls 322 (844)
T 3j0a_A 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322 (844)
T ss_dssp CBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEE
T ss_pred ccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECC
Confidence 456677777777766666666667777777777777776666667777777777777
Q ss_pred CCcccccCcccccCCCCCCeeeCCCCCCcchhhHHHHHhhhcccchhhhhccccCCCCCCCccccccCceEEEecccccc
Q 035998 358 RNNFSGQIPETYKNFESLSYLSLSNSSIYNLSSALQVLQQCRNLTTLVLTLNFRNEKLPTDPRLHFANLKVLVIASCGLR 437 (1020)
Q Consensus 358 ~N~l~~~~p~~~~~l~~L~~L~l~~N~i~~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 437 (1020)
+|++++..|..|..+++|++|++++|.+..++.. .+..+++|+.|+++.|.+... ..+++|+.|.+++|.+.
T Consensus 323 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~--~~~~l~~L~~L~Ls~N~l~~i------~~~~~L~~L~l~~N~l~ 394 (844)
T 3j0a_A 323 YNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQ--TFKFLEKLQTLDLRDNALTTI------HFIPSIPDIFLSGNKLV 394 (844)
T ss_dssp SCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSS--CSCSCCCCCEEEEETCCSCCC------SSCCSCSEEEEESCCCC
T ss_pred CCCCCccCHHHhcCCCCCCEEECCCCCCCccChh--hhcCCCCCCEEECCCCCCCcc------cCCCCcchhccCCCCcc
Confidence 7777666666677777777777777776666542 355566666666666654321 11556666666666666
Q ss_pred cccchhhhcCCCCcEEecccccccccc-cccccCcCcCcEEeCCCCcccccCCC-CCCCCcccccccCcCCCCCCCcccc
Q 035998 438 GSIPQWLRGCSKLQLVDLSWNQLSGTI-PVWFGGFQDLFYLDLSNNTFTGEIPK-NLTGLPSLITRNISLEEPSPDFPFF 515 (1020)
Q Consensus 438 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~l~~s~~~~~~~~~~~ 515 (1020)
.+|.. ..+++.|++++|++++.. +..+..+++|++|+|++|++++..+. .+..+++|
T Consensus 395 -~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L----------------- 453 (844)
T 3j0a_A 395 -TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSL----------------- 453 (844)
T ss_dssp -CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTC-----------------
T ss_pred -ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCcc-----------------
Confidence 33332 345666666666666422 22345666677777777766643332 22333333
Q ss_pred eeecccccccccccccCCCCeeecccCccc-----cCCCccccCCCcceEEEecCCcceeccCccccCCCcccEEEccCC
Q 035998 516 MRRNVSARGLQYNQIWSFPPTIDLSLNRLD-----GSIWPEFGNLKKLHVFDLKHNNLSGPIPSELTGMTSLETLDLSYN 590 (1020)
Q Consensus 516 ~~~~~~~~~l~~n~~~~~~~~l~Ls~N~l~-----~~~~~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 590 (1020)
+.|+|++|.++ +..+..|.++++|+.|+|++|+|++..|..|.++++|++|+|++|
T Consensus 454 -------------------~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 514 (844)
T 3j0a_A 454 -------------------EQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN 514 (844)
T ss_dssp -------------------CBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESC
T ss_pred -------------------ccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCC
Confidence 35677777776 455677999999999999999999888889999999999999999
Q ss_pred cccccCCccccccccccccccccccccccCCCCCCCCCcCCccccCCCC
Q 035998 591 NLSGAIPISLEKLSFLSKFSVANNHLTGRIPSGGQFQTFPNSSFDGNNL 639 (1020)
Q Consensus 591 ~l~g~ip~~l~~l~~L~~l~ls~N~l~g~~p~~~~~~~~~~~~~~~n~l 639 (1020)
+|++..|..+. ++|+.|+|++|+|+|.+|.. +..+....+.+|++
T Consensus 515 ~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~ 559 (844)
T 3j0a_A 515 RLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKF 559 (844)
T ss_dssp CCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECC
T ss_pred CCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCc
Confidence 99987777666 89999999999999999854 66788888999983
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.1e-50 Score=488.19 Aligned_cols=486 Identities=20% Similarity=0.233 Sum_probs=377.1
Q ss_pred ceEEcCCCCCCCCCCCCCCCceEEEecCCCcccccccccccCCCCCcEEecCCCCCCCCCCccccCCCCCCeeeccCCCC
Q 035998 66 VGITCNSSSSLGLNDSIGSGRVTGLFLYKRRLKGKLSESLGNLVQLRFLNLSHNLLKGTVPVSLVNLPNLEVLDLSSNDL 145 (1020)
Q Consensus 66 ~gv~C~~~~~~~~~~~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 145 (1020)
.-|.|+..+.+.+|...+ .+++.|+|++|.+++..+.+|+++++|++|+|++|++++..|..|+++++|++|+|++|++
T Consensus 10 ~~~~c~~~~l~~ip~~l~-~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 88 (570)
T 2z63_A 10 ITYQCMELNFYKIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (570)
T ss_dssp TEEECCSSCCSSCCSSSC-SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred cEEEeCCCCccccCCCcc-ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcC
Confidence 458999988999998765 5899999999999998889999999999999999999987788899999999999999999
Q ss_pred CCCCCCcc-CCCCcceeeeccCccCCCCCccccccCCcccEEEccCCCCCC-CCCCccccccccccccccccccccccch
Q 035998 146 SGPLPQTI-NLPSIQVLDISSNSLNGSVPTSICKNSSRIRVINLSVNYFSG-TLSPGLGNCASLEHLCLGMNDLTGGIAD 223 (1020)
Q Consensus 146 ~~~~p~~~-~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~-~~~~~l~~l~~L~~L~L~~N~l~~~~~~ 223 (1020)
++.+|..+ ++++|++|+|++|+++ .+|...+..+++|++|++++|.+++ .+|..|+++++|++|++++|++++..+.
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~ 167 (570)
T 2z63_A 89 QSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (570)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGG
T ss_pred CccCHhhhcCccccccccccccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHH
Confidence 99888888 8999999999999998 5665456789999999999999997 4799999999999999999999988899
Q ss_pred hhhhhccc----ccccccccccCCCCCcccccCCCccEEEccCCcCcc-cCcccccCCccc-------------------
Q 035998 224 DIFQLQKL----RLLGLQDNQLSGKLSPSIADLSNLVRLDVSSNNFSG-NIPDVFAGLGEF------------------- 279 (1020)
Q Consensus 224 ~~~~l~~L----~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L------------------- 279 (1020)
.+..+++| +.|++++|.+++..|..+..+ +|++|++++|.... ..+..+.+++++
T Consensus 168 ~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~ 246 (570)
T 2z63_A 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246 (570)
T ss_dssp GGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEEC
T ss_pred HccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhc
Confidence 99999999 899999999998888888766 89999999985431 223333333333
Q ss_pred -------------ceeecccc-cccccCCCCCcCCcccccccccccccccccccCCCCCCCcCEEEcCCCccCCCCCCCC
Q 035998 280 -------------QYLVAHSN-RFTGRIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNKFNGPLPTNL 345 (1020)
Q Consensus 280 -------------~~L~L~~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l 345 (1020)
+.+++++| .+.+..|..+..+++|+.|++++|.++ .+|..+..+ +|++|++++|++. .+|.
T Consensus 247 ~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~-- 321 (570)
T 2z63_A 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT-- 321 (570)
T ss_dssp CTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--
T ss_pred chhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--
Confidence 33444444 555556666666666666666666666 344445555 6666666666666 4443
Q ss_pred CCCCCCCeEecCCCcccccCcccccCCCCCCeeeCCCCCCcchhhHHHHHhhhcccchhhhhccccCCCCCCCccccccC
Q 035998 346 PRCRKLKNINLARNNFSGQIPETYKNFESLSYLSLSNSSIYNLSSALQVLQQCRNLTTLVLTLNFRNEKLPTDPRLHFAN 425 (1020)
Q Consensus 346 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~i~~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 425 (1020)
..+++|+.|++++|.+.+..+. ..+++|++|++++|.++.+......+ ..+++
T Consensus 322 ~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~-------------------------~~~~~ 374 (570)
T 2z63_A 322 LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSD-------------------------FGTTS 374 (570)
T ss_dssp CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHH-------------------------HTCSC
T ss_pred ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccc-------------------------cccCc
Confidence 3556666666666666654443 55666666666666665442111111 23455
Q ss_pred ceEEEecccccccccchhhhcCCCCcEEeccccccccccc-ccccCcCcCcEEeCCCCcccccCCCCCCCCcccccccCc
Q 035998 426 LKVLVIASCGLRGSIPQWLRGCSKLQLVDLSWNQLSGTIP-VWFGGFQDLFYLDLSNNTFTGEIPKNLTGLPSLITRNIS 504 (1020)
Q Consensus 426 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~s 504 (1020)
|+.|++++|.+.+..+. +..+++|+.|++++|++++..| ..|..+++|++|+|++|++++.+|..+.++++|
T Consensus 375 L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------ 447 (570)
T 2z63_A 375 LKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL------ 447 (570)
T ss_dssp CCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC------
T ss_pred cCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcC------
Confidence 66666666666655444 7777888888888888876655 467778888888888888887777777777766
Q ss_pred CCCCCCCcccceeecccccccccccccCCCCeeecccCccc-cCCCccccCCCcceEEEecCCcceeccCccccCCCccc
Q 035998 505 LEEPSPDFPFFMRRNVSARGLQYNQIWSFPPTIDLSLNRLD-GSIWPEFGNLKKLHVFDLKHNNLSGPIPSELTGMTSLE 583 (1020)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~l~Ls~N~l~-~~~~~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 583 (1020)
+.|++++|+++ +.+|..|+.+++|+.|+|++|++++..|..|+.+++|+
T Consensus 448 ------------------------------~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 497 (570)
T 2z63_A 448 ------------------------------EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497 (570)
T ss_dssp ------------------------------CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ------------------------------cEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCC
Confidence 35778888887 57888888899999999999999888888899999999
Q ss_pred EEEccCCcccccCCccccccccccccccccccccccCCCC
Q 035998 584 TLDLSYNNLSGAIPISLEKLSFLSKFSVANNHLTGRIPSG 623 (1020)
Q Consensus 584 ~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~~p~~ 623 (1020)
+|+|++|++++..|..+.++++|+.|++++|++++.+|..
T Consensus 498 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 498 VLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred EEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 9999999999887778888999999999999999888764
No 14
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=100.00 E-value=5.7e-52 Score=451.59 Aligned_cols=259 Identities=28% Similarity=0.465 Sum_probs=213.8
Q ss_pred cCCCcCCeeeccCCeEEEEEEeC------CCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEE
Q 035998 742 NNFDQANIIGCGGFGLVYRATLP------DGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLL 815 (1020)
Q Consensus 742 ~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 815 (1020)
++|.+.+.||+|+||+||+|++. +++.||||+++.......++|.+|++++++++|||||+++++|.+.+..++
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 92 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM 92 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEE
Confidence 46788899999999999999864 467899999987766667889999999999999999999999999999999
Q ss_pred EEEeccCCChhhhhhhcC---------CCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEE
Q 035998 816 IYSFMENGSLDYWLHEKL---------DGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHL 886 (1020)
Q Consensus 816 v~e~~~~g~L~~~l~~~~---------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl 886 (1020)
|||||++|+|.++++... .....++|.++..|+.|||+||+|||++ +||||||||+|||++.++.+||
T Consensus 93 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDlKp~NILl~~~~~~Ki 169 (299)
T 4asz_A 93 VFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQ---HFVHRDLATRNCLVGENLLVKI 169 (299)
T ss_dssp EEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEE
T ss_pred EEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCccCHhhEEECCCCcEEE
Confidence 999999999999997642 2345799999999999999999999999 9999999999999999999999
Q ss_pred eeccccccccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHc-CCCCCCCCCCCCcccHHHHHHHH
Q 035998 887 ADFGLARLILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLT-GKRPMDMCKPKGSRDLISWVIRM 965 (1020)
Q Consensus 887 ~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-g~~pf~~~~~~~~~~~~~~~~~~ 965 (1020)
+|||+|+...............||+.|||||++.++.++.++|||||||++|||+| |+.||...... +.. ..+
T Consensus 170 ~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~---~~~---~~i 243 (299)
T 4asz_A 170 GDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNN---EVI---ECI 243 (299)
T ss_dssp CCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHH---HHH---HHH
T ss_pred CCcccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHH---HHH---HHH
Confidence 99999987644333333344578999999999999999999999999999999999 99999754321 222 122
Q ss_pred HhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 966 RQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 966 ~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
..... .. .+.....++.+++.+||+.||++||||+||+++|+++
T Consensus 244 ~~~~~-~~---------~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~ 287 (299)
T 4asz_A 244 TQGRV-LQ---------RPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNL 287 (299)
T ss_dssp HHTCC-CC---------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HcCCC-CC---------CCccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence 22111 11 1112234688999999999999999999999999875
No 15
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=100.00 E-value=3.4e-51 Score=451.85 Aligned_cols=259 Identities=28% Similarity=0.426 Sum_probs=206.8
Q ss_pred cCCCcCCeeeccCCeEEEEEEeC------CCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEE
Q 035998 742 NNFDQANIIGCGGFGLVYRATLP------DGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLL 815 (1020)
Q Consensus 742 ~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 815 (1020)
++|.+.++||+|+||+||+|+++ +++.||||+++.......++|.+|++++++++|||||+++++|.+.+..++
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 120 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLM 120 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEE
Confidence 45677889999999999999864 477899999987766667889999999999999999999999999999999
Q ss_pred EEEeccCCChhhhhhhcCC-----------CCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCe
Q 035998 816 IYSFMENGSLDYWLHEKLD-----------GPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGA 884 (1020)
Q Consensus 816 v~e~~~~g~L~~~l~~~~~-----------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 884 (1020)
|||||++|+|.++++.... ...+++|.+++.|+.|||+||+|||++ +||||||||+|||++.++.+
T Consensus 121 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLKp~NILl~~~~~~ 197 (329)
T 4aoj_A 121 VFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGL---HFVHRDLATRNCLVGQGLVV 197 (329)
T ss_dssp EEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTTEE
T ss_pred EEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcC---CeecccccHhhEEECCCCcE
Confidence 9999999999999976432 234699999999999999999999999 99999999999999999999
Q ss_pred EEeeccccccccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHc-CCCCCCCCCCCCcccHHHHHH
Q 035998 885 HLADFGLARLILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLT-GKRPMDMCKPKGSRDLISWVI 963 (1020)
Q Consensus 885 kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-g~~pf~~~~~~~~~~~~~~~~ 963 (1020)
||+|||+++...............||+.|||||++.+..++.++|||||||++|||+| |+.||...... +.+ .
T Consensus 198 Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~---~~~---~ 271 (329)
T 4aoj_A 198 KIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNT---EAI---D 271 (329)
T ss_dssp EECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHH---HHH---H
T ss_pred EEcccccceeccCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCCHH---HHH---H
Confidence 9999999987654433344455789999999999999999999999999999999999 99999754321 122 1
Q ss_pred HHHhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 964 RMRQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 964 ~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
.+...... . .+.....++.+++.+||+.||++||||+||+++|+.+
T Consensus 272 ~i~~g~~~-~---------~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l 317 (329)
T 4aoj_A 272 CITQGREL-E---------RPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQAL 317 (329)
T ss_dssp HHHHTCCC-C---------CCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHH
T ss_pred HHHcCCCC-C---------CcccccHHHHHHHHHHcCcChhHCcCHHHHHHHHHHH
Confidence 22221111 1 0112234688999999999999999999999999876
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4.7e-50 Score=482.65 Aligned_cols=485 Identities=18% Similarity=0.203 Sum_probs=369.0
Q ss_pred CCcCceEEcCC--CCCCCCCCCCCCCceEEEecCCCcccccccccccCCCCCcEEecCCCCCCCCCCccccCCCCCCeee
Q 035998 62 CCHWVGITCNS--SSSLGLNDSIGSGRVTGLFLYKRRLKGKLSESLGNLVQLRFLNLSHNLLKGTVPVSLVNLPNLEVLD 139 (1020)
Q Consensus 62 ~C~w~gv~C~~--~~~~~~~~~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 139 (1020)
.|.|.|| |+. ...+.+|.... .+++.|+|++|.+++..|.+|+++++|++|+|++|++++..|.+|+++++|++|+
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 80 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLT-AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCC-TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCCce-EECCCCccccccccCC-CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence 5999998 864 35677777665 6888999999999888888899999999999999999887778899999999999
Q ss_pred ccCCCCCCCCCCcc-CCCCcceeeeccCccCCC-CCccccccCCcccEEEccCCCCCCCCC-Cccccccccccccccccc
Q 035998 140 LSSNDLSGPLPQTI-NLPSIQVLDISSNSLNGS-VPTSICKNSSRIRVINLSVNYFSGTLS-PGLGNCASLEHLCLGMND 216 (1020)
Q Consensus 140 L~~n~l~~~~p~~~-~l~~L~~L~Ls~N~l~~~-ip~~~~~~~~~L~~L~L~~N~l~~~~~-~~l~~l~~L~~L~L~~N~ 216 (1020)
|++|++++.+|..+ ++++|++|+|++|++++. +|. .+..+++|++|++++|.+.+.+| ..|+++++|++|++++|+
T Consensus 81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~ 159 (549)
T 2z81_A 81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS 159 (549)
T ss_dssp CTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred CCCCccCccCHHHhccCCCCcEEECCCCcccccchhh-hhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc
Confidence 99999988888766 789999999999988853 333 45678889999999888544554 578888889999999998
Q ss_pred cccccchhhhhhcccccccccccccCCCCCcc-cccCCCccEEEccCCcCcccC---cccccCCcccceeeccccccccc
Q 035998 217 LTGGIADDIFQLQKLRLLGLQDNQLSGKLSPS-IADLSNLVRLDVSSNNFSGNI---PDVFAGLGEFQYLVAHSNRFTGR 292 (1020)
Q Consensus 217 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~---p~~~~~l~~L~~L~L~~N~l~~~ 292 (1020)
+++..|..+..+++|++|+++.|.+. .+|.. +..+++|++|++++|++++.. ......+++|+.|++++|++++.
T Consensus 160 l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 238 (549)
T 2z81_A 160 LRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE 238 (549)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHH
T ss_pred ccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchh
Confidence 88888888888888888888888887 34443 456888888888888888642 22334567888888888888765
Q ss_pred CC----CCCcCCcccccccccccccccccc------cCCCCCCCcCEEEcCCCccCCCC-----CCCCCCCCCCCeEecC
Q 035998 293 IP----HSLSNSPTLNLLNLRNNSLDGSLL------LNCPALTNLTSLDLGTNKFNGPL-----PTNLPRCRKLKNINLA 357 (1020)
Q Consensus 293 ~p----~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~L~~N~l~~~~-----p~~l~~l~~L~~L~L~ 357 (1020)
.+ ..+..+++|+.|++++|.+.+... ..+..+++|+.|++.++.+.... +..+....+|+.|+++
T Consensus 239 ~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~ 318 (549)
T 2z81_A 239 SFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVE 318 (549)
T ss_dssp HHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEE
T ss_pred HHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEec
Confidence 43 334566788888888888775421 23456677778888777665311 1112234567777777
Q ss_pred CCcccccCcccc-cCCCCCCeeeCCCCCCcchh-hHHHHHhhhcccchhhhhccccCCCCCCCccccccCceEEEecccc
Q 035998 358 RNNFSGQIPETY-KNFESLSYLSLSNSSIYNLS-SALQVLQQCRNLTTLVLTLNFRNEKLPTDPRLHFANLKVLVIASCG 435 (1020)
Q Consensus 358 ~N~l~~~~p~~~-~~l~~L~~L~l~~N~i~~l~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~ 435 (1020)
+|+++ .+|..+ ..+++|++|++++|+++... ... .....+++|+.|++++|.
T Consensus 319 ~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-------------------------~~~~~l~~L~~L~Ls~N~ 372 (549)
T 2z81_A 319 NSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNS-------------------------ACKGAWPSLQTLVLSQNH 372 (549)
T ss_dssp SSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHH-------------------------TCTTSSTTCCEEECTTSC
T ss_pred cCccc-cCCHHHHhcCccccEEEccCCccccccccch-------------------------hhhhccccCcEEEccCCc
Confidence 77776 455544 46777777777777766421 110 012245677777888887
Q ss_pred cccccc--hhhhcCCCCcEEecccccccccccccccCcCcCcEEeCCCCcccccCCCCCCCCcccccccCcCCCCCCCcc
Q 035998 436 LRGSIP--QWLRGCSKLQLVDLSWNQLSGTIPVWFGGFQDLFYLDLSNNTFTGEIPKNLTGLPSLITRNISLEEPSPDFP 513 (1020)
Q Consensus 436 l~~~~p--~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~s~~~~~~~~~ 513 (1020)
+++..+ ..+..+++|++|++++|+++ .+|..+..+++|++|+|++|+++ .+|..+. ++|
T Consensus 373 l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~--~~L--------------- 433 (549)
T 2z81_A 373 LRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP--QTL--------------- 433 (549)
T ss_dssp CCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTSC--TTC---------------
T ss_pred ccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchhc--CCc---------------
Confidence 776543 55788888888999998888 67888888888888999888887 3333221 122
Q ss_pred cceeecccccccccccccCCCCeeecccCccccCCCccccCCCcceEEEecCCcceeccCccccCCCcccEEEccCCccc
Q 035998 514 FFMRRNVSARGLQYNQIWSFPPTIDLSLNRLDGSIWPEFGNLKKLHVFDLKHNNLSGPIPSELTGMTSLETLDLSYNNLS 593 (1020)
Q Consensus 514 ~~~~~~~~~~~l~~n~~~~~~~~l~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 593 (1020)
+.|||++|+|++.. +.+++|++|+|++|+|+ .+|. .+.+++|++|||++|+|+
T Consensus 434 ---------------------~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~ 486 (549)
T 2z81_A 434 ---------------------EVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLK 486 (549)
T ss_dssp ---------------------SEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCC
T ss_pred ---------------------eEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccC
Confidence 46889999998753 68899999999999998 7887 678999999999999999
Q ss_pred ccCCccccccccccccccccccccccCCC
Q 035998 594 GAIPISLEKLSFLSKFSVANNHLTGRIPS 622 (1020)
Q Consensus 594 g~ip~~l~~l~~L~~l~ls~N~l~g~~p~ 622 (1020)
+.+|..+..+++|+.|++++|++++..|.
T Consensus 487 ~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 487 SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp CCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred CcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence 99998999999999999999999998874
No 17
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=100.00 E-value=6.3e-51 Score=445.34 Aligned_cols=258 Identities=26% Similarity=0.415 Sum_probs=211.9
Q ss_pred CCCcCCeeeccCCeEEEEEEeC------CCCEEEEEEecCCc-hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEE
Q 035998 743 NFDQANIIGCGGFGLVYRATLP------DGRNVAIKRLSGDC-GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLL 815 (1020)
Q Consensus 743 ~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 815 (1020)
++++.+.||+|+||+||+|++. +++.||||+++... ....++|.+|++++++++|||||+++|+|.+.+..++
T Consensus 27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~l 106 (308)
T 4gt4_A 27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSM 106 (308)
T ss_dssp GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred HCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEEEE
Confidence 4567889999999999999863 46789999997553 3345789999999999999999999999999999999
Q ss_pred EEEeccCCChhhhhhhcCC------------CCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCC
Q 035998 816 IYSFMENGSLDYWLHEKLD------------GPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFG 883 (1020)
Q Consensus 816 v~e~~~~g~L~~~l~~~~~------------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~ 883 (1020)
|||||++|+|.+++..... ....+++.++..|+.|||+||+|||++ +||||||||+|||+++++.
T Consensus 107 V~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLK~~NILl~~~~~ 183 (308)
T 4gt4_A 107 IFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSH---HVVHKDLATRNVLVYDKLN 183 (308)
T ss_dssp EEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGC
T ss_pred EEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCccccceEECCCCC
Confidence 9999999999999975421 124689999999999999999999999 9999999999999999999
Q ss_pred eEEeeccccccccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHc-CCCCCCCCCCCCcccHHHHH
Q 035998 884 AHLADFGLARLILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLT-GKRPMDMCKPKGSRDLISWV 962 (1020)
Q Consensus 884 ~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-g~~pf~~~~~~~~~~~~~~~ 962 (1020)
+||+|||+++...........+...||+.|||||++.++.++.++|||||||++|||+| |+.||..... .+...
T Consensus 184 ~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~---~~~~~-- 258 (308)
T 4gt4_A 184 VKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSN---QDVVE-- 258 (308)
T ss_dssp EEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCH---HHHHH--
T ss_pred EEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCCH---HHHHH--
Confidence 99999999987654433344456789999999999999999999999999999999999 8999975432 12222
Q ss_pred HHHHhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 963 IRMRQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 963 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
.+..... .. .+..+...+.+++.+||+.||++||||+||++.|+.+
T Consensus 259 -~i~~~~~-~~---------~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~ 304 (308)
T 4gt4_A 259 -MIRNRQV-LP---------CPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAW 304 (308)
T ss_dssp -HHHTTCC-CC---------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred -HHHcCCC-CC---------CcccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence 2221111 11 1122334688999999999999999999999999875
No 18
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-49 Score=432.35 Aligned_cols=259 Identities=27% Similarity=0.447 Sum_probs=202.1
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeCCCCEEEEEEecCCc--hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEEE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLPDGRNVAIKRLSGDC--GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIYS 818 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 818 (1020)
.++|++.+.||+|+||+||+|+++ ..||||+++... ....+.|.+|++++++++|||||++++++.+ +..++|||
T Consensus 35 ~~~l~l~~~iG~G~fG~Vy~~~~~--~~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVmE 111 (307)
T 3omv_A 35 ASEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQ 111 (307)
T ss_dssp TTSCCEEEECCCCSSSEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEE
T ss_pred HHHeEEeeEEeeCCCcEEEEEEEC--CcEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC-CeEEEEEE
Confidence 456788999999999999999975 469999987443 3445689999999999999999999998864 56899999
Q ss_pred eccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccCC
Q 035998 819 FMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILSP 898 (1020)
Q Consensus 819 ~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~ 898 (1020)
||++|+|.++++.. ...+++.++..|+.|||+||+|||++ +||||||||+|||++.++.+||+|||+|+.....
T Consensus 112 y~~gGsL~~~l~~~---~~~l~~~~~~~i~~qia~gL~yLH~~---~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~ 185 (307)
T 3omv_A 112 WCEGSSLYKHLHVQ---ETKFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRW 185 (307)
T ss_dssp CCSSCBHHHHHHTS---CCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCSSSEEEETTEEEEECCCSSCBC----
T ss_pred cCCCCCHHHHHhhc---CCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCccCHHHEEECCCCcEEEeeccCceecccC
Confidence 99999999999754 34689999999999999999999999 9999999999999999999999999999876443
Q ss_pred CCcccccccccccCccCccccCC---CCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhccccccc
Q 035998 899 YDTHVTTDLVGTLGYIPPEYGQA---SVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVL 975 (1020)
Q Consensus 899 ~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 975 (1020)
.........+||+.|||||++.+ ..|+.++|||||||++|||+||+.||...... ..+. .........
T Consensus 186 ~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~---~~~~--~~~~~~~~~---- 256 (307)
T 3omv_A 186 SGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNR---DQII--FMVGRGYAS---- 256 (307)
T ss_dssp --------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCH---HHHH--HHHHTTCCC----
T ss_pred CcceeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChH---HHHH--HHHhcCCCC----
Confidence 33334456789999999998753 46899999999999999999999999754321 1111 111111111
Q ss_pred CccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 976 DPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 976 d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
|.. ...+......+.+++.+||+.||++||||+||++.|+.+
T Consensus 257 -p~~-~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l 298 (307)
T 3omv_A 257 -PDL-SKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELL 298 (307)
T ss_dssp -CCS-TTSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHH
T ss_pred -CCc-ccccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence 100 011122334688999999999999999999999988754
No 19
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-48 Score=472.47 Aligned_cols=501 Identities=19% Similarity=0.221 Sum_probs=414.5
Q ss_pred EecCCCcccccccccccCCCCCcEEecCCCCCCCCCCccccCCCCCCeeeccCCCCCCCCCCcc-CCCCcceeeeccCcc
Q 035998 90 LFLYKRRLKGKLSESLGNLVQLRFLNLSHNLLKGTVPVSLVNLPNLEVLDLSSNDLSGPLPQTI-NLPSIQVLDISSNSL 168 (1020)
Q Consensus 90 l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-~l~~L~~L~Ls~N~l 168 (1020)
++-.+.+++ .+|..+. +++++|+|++|++++..+.+|.++++|++|+|++|++++..|..+ ++++|++|+|++|++
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 88 (570)
T 2z63_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (570)
T ss_dssp EECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcC
Confidence 555666665 4665554 579999999999998888899999999999999999999888888 799999999999999
Q ss_pred CCCCCccccccCCcccEEEccCCCCCCCCCCcccccccccccccccccccc-ccchhhhhhcccccccccccccCCCCCc
Q 035998 169 NGSVPTSICKNSSRIRVINLSVNYFSGTLSPGLGNCASLEHLCLGMNDLTG-GIADDIFQLQKLRLLGLQDNQLSGKLSP 247 (1020)
Q Consensus 169 ~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 247 (1020)
+ .+|...+..+++|++|++++|++++..+..|+++++|++|+|++|.+++ .+|..|.++++|++|++++|++++..+.
T Consensus 89 ~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~ 167 (570)
T 2z63_A 89 Q-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (570)
T ss_dssp C-EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGG
T ss_pred C-ccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHH
Confidence 8 5665666789999999999999997777689999999999999999987 4699999999999999999999988888
Q ss_pred ccccCCCc----cEEEccCCcCcccCcccccCCcccceeecccccccc-cCCCCCcCCcccccccccccccc------cc
Q 035998 248 SIADLSNL----VRLDVSSNNFSGNIPDVFAGLGEFQYLVAHSNRFTG-RIPHSLSNSPTLNLLNLRNNSLD------GS 316 (1020)
Q Consensus 248 ~~~~l~~L----~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~------~~ 316 (1020)
.+..+++| ++|++++|.+++..|..|... +|+.|++++|.... .++..+..++.++.+.+..+.+. ..
T Consensus 168 ~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~ 246 (570)
T 2z63_A 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246 (570)
T ss_dssp GGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEEC
T ss_pred HccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhc
Confidence 89998888 899999999999888888876 89999999885432 23344555566655554433222 11
Q ss_pred cccCCCCCC--CcCEEEcCCC-ccCCCCCCCCCCCCCCCeEecCCCcccccCcccccCCCCCCeeeCCCCCCcchhhHHH
Q 035998 317 LLLNCPALT--NLTSLDLGTN-KFNGPLPTNLPRCRKLKNINLARNNFSGQIPETYKNFESLSYLSLSNSSIYNLSSALQ 393 (1020)
Q Consensus 317 ~~~~~~~l~--~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~i~~l~~~~~ 393 (1020)
....+..++ .++.+++++| .+.+.+|..+..+++|+.|++++|.++ .+|..+..+ +|++|++++|.+..+|.
T Consensus 247 ~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~--- 321 (570)
T 2z63_A 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPT--- 321 (570)
T ss_dssp CTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCB---
T ss_pred chhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCc---
Confidence 122222222 3566777777 777778888888888888888888887 577777777 88888888888887765
Q ss_pred HHhhhcccchhhhhccccCCCCCCCccccccCceEEEeccccccccc--chhhhcCCCCcEEecccccccccccccccCc
Q 035998 394 VLQQCRNLTTLVLTLNFRNEKLPTDPRLHFANLKVLVIASCGLRGSI--PQWLRGCSKLQLVDLSWNQLSGTIPVWFGGF 471 (1020)
Q Consensus 394 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 471 (1020)
..+++|+.|+++.|......+. ..+++|+.|++++|.+.+.. |..+.++++|++|++++|++++..+. |..+
T Consensus 322 --~~l~~L~~L~l~~n~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l 395 (570)
T 2z63_A 322 --LKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGL 395 (570)
T ss_dssp --CBCSSCCEEEEESCBSCCBCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETC
T ss_pred --ccccccCEEeCcCCcccccccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-cccc
Confidence 3677888888888766554443 57889999999999998765 78899999999999999999955444 9999
Q ss_pred CcCcEEeCCCCcccccCC-CCCCCCcccccccCcCCCCCCCcccceeecccccccccccccCCCCeeecccCccccCCCc
Q 035998 472 QDLFYLDLSNNTFTGEIP-KNLTGLPSLITRNISLEEPSPDFPFFMRRNVSARGLQYNQIWSFPPTIDLSLNRLDGSIWP 550 (1020)
Q Consensus 472 ~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~l~~s~~~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~l~Ls~N~l~~~~~~ 550 (1020)
++|++|++++|.+++..| ..+.++++| +.|++++|++++..|.
T Consensus 396 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L------------------------------------~~L~l~~n~l~~~~~~ 439 (570)
T 2z63_A 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNL------------------------------------IYLDISHTHTRVAFNG 439 (570)
T ss_dssp TTCCEEECTTSEEESCTTSCTTTTCTTC------------------------------------CEEECTTSCCEECCTT
T ss_pred CCCCEEEccCCccccccchhhhhcCCCC------------------------------------CEEeCcCCcccccchh
Confidence 999999999999998766 467777776 4688899999999999
Q ss_pred cccCCCcceEEEecCCcce-eccCccccCCCcccEEEccCCcccccCCccccccccccccccccccccccCCCC-CCCCC
Q 035998 551 EFGNLKKLHVFDLKHNNLS-GPIPSELTGMTSLETLDLSYNNLSGAIPISLEKLSFLSKFSVANNHLTGRIPSG-GQFQT 628 (1020)
Q Consensus 551 ~~~~L~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~~p~~-~~~~~ 628 (1020)
.|+++++|++|+|++|+++ +.+|..++.+++|++|+|++|++++..|..+.++++|+.|++++|++++.+|.. ..+..
T Consensus 440 ~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 519 (570)
T 2z63_A 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTS 519 (570)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred hhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccC
Confidence 9999999999999999998 679999999999999999999999999999999999999999999999988763 56677
Q ss_pred cCCccccCCCCCCC
Q 035998 629 FPNSSFDGNNLCGE 642 (1020)
Q Consensus 629 ~~~~~~~~n~l~~~ 642 (1020)
+....+.+|++.+.
T Consensus 520 L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 520 LQKIWLHTNPWDCS 533 (570)
T ss_dssp CCEEECCSSCBCCC
T ss_pred CcEEEecCCcccCC
Confidence 88889999987653
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.2e-50 Score=488.69 Aligned_cols=453 Identities=19% Similarity=0.258 Sum_probs=374.5
Q ss_pred CCCcEEecCCCCCCCCCCccccCCCCCCeeeccCCCC------CC------CCCCccCCCCcceeeeccCccCCCCCccc
Q 035998 109 VQLRFLNLSHNLLKGTVPVSLVNLPNLEVLDLSSNDL------SG------PLPQTINLPSIQVLDISSNSLNGSVPTSI 176 (1020)
Q Consensus 109 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l------~~------~~p~~~~l~~L~~L~Ls~N~l~~~ip~~~ 176 (1020)
.+++.|+|++|+++|.+|++|++|++|++|+|++|.+ .+ .+|... +..|+ +++++|.+.+.+|..+
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~-~~~l~-l~l~~~~l~~~~~~~~ 158 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ-KQKMR-MHYQKTFVDYDPREDF 158 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH-HHHHH-THHHHHHTCCCGGGGS
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH-HHHHH-hhHHHhhhccCchhhH
Confidence 5789999999999999999999999999999999976 22 222222 56677 8899999988888777
Q ss_pred cccCCcccEEEccCCCCCCCCCCcccccccccccccc--ccccccccchhhhhhcccccccccccccCCC----------
Q 035998 177 CKNSSRIRVINLSVNYFSGTLSPGLGNCASLEHLCLG--MNDLTGGIADDIFQLQKLRLLGLQDNQLSGK---------- 244 (1020)
Q Consensus 177 ~~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~--~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---------- 244 (1020)
...+..+..+++....+.. .....++.+++. +|++++ +|..++++++|++|+|++|++++.
T Consensus 159 ~~~~~~l~~~~l~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 231 (636)
T 4eco_A 159 SDLIKDCINSDPQQKSIKK------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENEN 231 (636)
T ss_dssp CHHHHHHHHHCTTSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTT
T ss_pred HHHHHHHhhcCcccccccc------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccc
Confidence 6555555566665544432 222344445444 588887 888899999999999999999875
Q ss_pred -------CCcccc--cCCCccEEEccCCcCcccCcccccCCcccceeeccccc-ccc-cCCCCCcCC------ccccccc
Q 035998 245 -------LSPSIA--DLSNLVRLDVSSNNFSGNIPDVFAGLGEFQYLVAHSNR-FTG-RIPHSLSNS------PTLNLLN 307 (1020)
Q Consensus 245 -------~~~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~-~~p~~~~~l------~~L~~L~ 307 (1020)
+|..++ ++++|++|+|++|++.+.+|..|+++++|++|++++|+ ++| .+|..++.+ ++|++|+
T Consensus 232 ~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~ 311 (636)
T 4eco_A 232 SEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY 311 (636)
T ss_dssp SHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEE
T ss_pred cchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEE
Confidence 888888 99999999999999999999999999999999999998 888 788888776 8999999
Q ss_pred cccccccccccc--CCCCCCCcCEEEcCCCccCCCCCCCCCCCCCCCeEecCCCcccccCcccccCCCC-CCeeeCCCCC
Q 035998 308 LRNNSLDGSLLL--NCPALTNLTSLDLGTNKFNGPLPTNLPRCRKLKNINLARNNFSGQIPETYKNFES-LSYLSLSNSS 384 (1020)
Q Consensus 308 L~~N~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~-L~~L~l~~N~ 384 (1020)
+++|+++ .+|. .+..+++|++|+|++|+++|.+| .+..+++|++|+|++|+++ .+|..+..+++ |++|++++|.
T Consensus 312 L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~ 388 (636)
T 4eco_A 312 IGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNK 388 (636)
T ss_dssp CCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSC
T ss_pred CCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCc
Confidence 9999998 6777 78899999999999999998888 8999999999999999998 78888999998 9999999999
Q ss_pred CcchhhHHHHHhhhcccchhhhhccccCCCCCCCccccccCceEEEecccccccccchhhh-------cCCCCcEEeccc
Q 035998 385 IYNLSSALQVLQQCRNLTTLVLTLNFRNEKLPTDPRLHFANLKVLVIASCGLRGSIPQWLR-------GCSKLQLVDLSW 457 (1020)
Q Consensus 385 i~~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~-------~l~~L~~L~Ls~ 457 (1020)
++.+|..+ ....+++|+.|++++|.+.+.+|..+. .+.+|+.|+|++
T Consensus 389 l~~lp~~~--------------------------~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~ 442 (636)
T 4eco_A 389 LKYIPNIF--------------------------DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSN 442 (636)
T ss_dssp CSSCCSCC--------------------------CTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCS
T ss_pred Ccccchhh--------------------------hhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcC
Confidence 87665421 112345788999999999999998888 888999999999
Q ss_pred ccccccccccccCcCcCcEEeCCCCcccccCCCCCCC-Cc-------ccccccCcCCCCCCCcccceeeccccccccccc
Q 035998 458 NQLSGTIPVWFGGFQDLFYLDLSNNTFTGEIPKNLTG-LP-------SLITRNISLEEPSPDFPFFMRRNVSARGLQYNQ 529 (1020)
Q Consensus 458 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~-------~L~~l~~s~~~~~~~~~~~~~~~~~~~~l~~n~ 529 (1020)
|++++..+..+..+++|++|+|++|+++ .+|..... +. +|
T Consensus 443 N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L------------------------------- 490 (636)
T 4eco_A 443 NQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLL------------------------------- 490 (636)
T ss_dssp SCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGC-------------------------------
T ss_pred CccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCc-------------------------------
Confidence 9999544445677999999999999999 66654322 21 22
Q ss_pred ccCCCCeeecccCccccCCCcccc--CCCcceEEEecCCcceeccCccccCCCcccEEEc------cCCcccccCCcccc
Q 035998 530 IWSFPPTIDLSLNRLDGSIWPEFG--NLKKLHVFDLKHNNLSGPIPSELTGMTSLETLDL------SYNNLSGAIPISLE 601 (1020)
Q Consensus 530 ~~~~~~~l~Ls~N~l~~~~~~~~~--~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L------s~N~l~g~ip~~l~ 601 (1020)
+.|+|++|+|+ .+|..+. .+++|+.|+|++|+|++ +|..++.+++|++|+| ++|++.+.+|.++.
T Consensus 491 -----~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~ 563 (636)
T 4eco_A 491 -----TSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT 563 (636)
T ss_dssp -----CEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGG
T ss_pred -----cEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHh
Confidence 47899999999 6888887 99999999999999997 9999999999999999 56889999999999
Q ss_pred ccccccccccccccccccCCCCCCCCCcCCccccCCCCC
Q 035998 602 KLSFLSKFSVANNHLTGRIPSGGQFQTFPNSSFDGNNLC 640 (1020)
Q Consensus 602 ~l~~L~~l~ls~N~l~g~~p~~~~~~~~~~~~~~~n~l~ 640 (1020)
++++|+.|+|++|++ +.+|.. .+.++..+.+.+|++.
T Consensus 564 ~l~~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 564 LCPSLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDNPNI 600 (636)
T ss_dssp GCSSCCEEECCSSCC-CBCCSC-CCTTCCEEECCSCTTC
T ss_pred cCCCCCEEECCCCcC-CccCHh-HhCcCCEEECcCCCCc
Confidence 999999999999999 778875 3367888889999744
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.9e-49 Score=471.14 Aligned_cols=452 Identities=18% Similarity=0.236 Sum_probs=368.4
Q ss_pred EEEecCCCcccccccccccCCCCCcEEecCCCCCCCCCCccccCCCCCCeeeccCCCCCCCCCCcc-CCCCcceeeeccC
Q 035998 88 TGLFLYKRRLKGKLSESLGNLVQLRFLNLSHNLLKGTVPVSLVNLPNLEVLDLSSNDLSGPLPQTI-NLPSIQVLDISSN 166 (1020)
Q Consensus 88 ~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-~l~~L~~L~Ls~N 166 (1020)
+.+++++++++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..+ ++++|++|+|++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 35788999998 5777776 899999999999998778889999999999999999998888887 7999999999999
Q ss_pred ccCCCCCccccccCCcccEEEccCCCCCC-CCCCccccccccccccccccccccccchhhhhhccc--cccccccccc--
Q 035998 167 SLNGSVPTSICKNSSRIRVINLSVNYFSG-TLSPGLGNCASLEHLCLGMNDLTGGIADDIFQLQKL--RLLGLQDNQL-- 241 (1020)
Q Consensus 167 ~l~~~ip~~~~~~~~~L~~L~L~~N~l~~-~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L--~~L~L~~N~l-- 241 (1020)
+++ .+|.. .+++|++|+|++|++++ .+|..|+++++|++|+|++|.+++ ..+..+++| ++|++++|++
T Consensus 80 ~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~ 152 (520)
T 2z7x_B 80 KLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYG 152 (520)
T ss_dssp CCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTT
T ss_pred cee-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccc
Confidence 998 77776 68899999999999987 478889999999999999999885 457777777 9999999998
Q ss_pred CCCCCcccccCC-CccEEEccCCcCcccCc-ccccCCcccceeeccccc-------ccccCCCCCcCCcccccccccccc
Q 035998 242 SGKLSPSIADLS-NLVRLDVSSNNFSGNIP-DVFAGLGEFQYLVAHSNR-------FTGRIPHSLSNSPTLNLLNLRNNS 312 (1020)
Q Consensus 242 ~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~-------l~~~~p~~~~~l~~L~~L~L~~N~ 312 (1020)
++..|..+..+. +...+++++|++.+.++ ..+..+++|+.|++++|+ +.+.+| .++.+++|+.|++++|.
T Consensus 153 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~ 231 (520)
T 2z7x_B 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIE 231 (520)
T ss_dssp SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEE
T ss_pred cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccc
Confidence 778888887766 45567888888876554 467778888888888887 776666 67888888888888887
Q ss_pred cccccccCCC---CCCCcCEEEcCCCccCCCCCCCC-----CCCCCCCeEecCCCcccccCc-ccccCC---CCCCeeeC
Q 035998 313 LDGSLLLNCP---ALTNLTSLDLGTNKFNGPLPTNL-----PRCRKLKNINLARNNFSGQIP-ETYKNF---ESLSYLSL 380 (1020)
Q Consensus 313 l~~~~~~~~~---~l~~L~~L~L~~N~l~~~~p~~l-----~~l~~L~~L~L~~N~l~~~~p-~~~~~l---~~L~~L~l 380 (1020)
+++..+..+. ..++|++|++++|+++|.+|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|++
T Consensus 232 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l 309 (520)
T 2z7x_B 232 TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTV 309 (520)
T ss_dssp EEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEE
T ss_pred cCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEc
Confidence 7753322111 13578888888888887778777 7777777777777777 344 444433 56777777
Q ss_pred CCCCCcchhhHHHHHhhhcccchhhhhccccCCCCCCCccccccCceEEEecccccccccchhhhcCCCCcEEecccccc
Q 035998 381 SNSSIYNLSSALQVLQQCRNLTTLVLTLNFRNEKLPTDPRLHFANLKVLVIASCGLRGSIPQWLRGCSKLQLVDLSWNQL 460 (1020)
Q Consensus 381 ~~N~i~~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 460 (1020)
++|.+..++ ....+++|+.|++++|.+.+.+|..++.+++|++|+|++|++
T Consensus 310 ~~n~l~~~~-----------------------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 360 (520)
T 2z7x_B 310 SGTRMVHML-----------------------------CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL 360 (520)
T ss_dssp ESSCCCCCC-----------------------------CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCC
T ss_pred CCCcccccc-----------------------------chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCcc
Confidence 777654322 013567899999999999999999999999999999999999
Q ss_pred cc--cccccccCcCcCcEEeCCCCcccccCCCC-CCCCcccccccCcCCCCCCCcccceeecccccccccccccCCCCee
Q 035998 461 SG--TIPVWFGGFQDLFYLDLSNNTFTGEIPKN-LTGLPSLITRNISLEEPSPDFPFFMRRNVSARGLQYNQIWSFPPTI 537 (1020)
Q Consensus 461 ~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~l~~s~~~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~l 537 (1020)
++ .+|.+|+.+++|++|+|++|++++.+|.. +..+++| +.|
T Consensus 361 ~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L------------------------------------~~L 404 (520)
T 2z7x_B 361 KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL------------------------------------LSL 404 (520)
T ss_dssp CBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC------------------------------------CEE
T ss_pred CccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC------------------------------------CEE
Confidence 96 56788999999999999999999856654 6666666 467
Q ss_pred ecccCccccCCCccccCCCcceEEEecCCcceeccCccccCCCcccEEEccCCcccccCCcc-ccccccccccccccccc
Q 035998 538 DLSLNRLDGSIWPEFGNLKKLHVFDLKHNNLSGPIPSELTGMTSLETLDLSYNNLSGAIPIS-LEKLSFLSKFSVANNHL 616 (1020)
Q Consensus 538 ~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~-l~~l~~L~~l~ls~N~l 616 (1020)
++++|++++..|..+. ++|+.|+|++|+|+ .+|..+..+++|++|+|++|+|+ .+|.. +..+++|+.|++++|++
T Consensus 405 ~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 405 NMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp ECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCB
T ss_pred ECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCC
Confidence 8889999888877765 79999999999998 89998999999999999999999 67776 99999999999999999
Q ss_pred cccCC
Q 035998 617 TGRIP 621 (1020)
Q Consensus 617 ~g~~p 621 (1020)
++..+
T Consensus 481 ~c~c~ 485 (520)
T 2z7x_B 481 DCSCP 485 (520)
T ss_dssp CCCHH
T ss_pred cccCC
Confidence 98655
No 22
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=100.00 E-value=3e-49 Score=435.49 Aligned_cols=250 Identities=25% Similarity=0.374 Sum_probs=202.0
Q ss_pred cCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc--hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEEE
Q 035998 742 NNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC--GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIYS 818 (1020)
Q Consensus 742 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 818 (1020)
++|++.+.||+|+||+||+|+.. +|+.||||++.... ....+.+.+|++++++++|||||++++++.+.+..|+|||
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE 103 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD 103 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEe
Confidence 58999999999999999999864 69999999997553 3345678999999999999999999999999999999999
Q ss_pred eccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccCC
Q 035998 819 FMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILSP 898 (1020)
Q Consensus 819 ~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~ 898 (1020)
||+||+|.+++... ....+++.+++.++.||+.||+|||++ +||||||||+|||++.+|.+||+|||+|+.....
T Consensus 104 y~~gg~L~~~i~~~--~~~~~~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~ 178 (350)
T 4b9d_A 104 YCEGGDLFKRINAQ--KGVLFQEDQILDWFVQICLALKHVHDR---KILHRDIKSQNIFLTKDGTVQLGDFGIARVLNST 178 (350)
T ss_dssp CCTTCBHHHHHHHT--TTCCCCHHHHHHHHHHHHHHHHHHHHT---TCEETTCCGGGEEECTTCCEEECSTTEESCCCHH
T ss_pred CCCCCcHHHHHHHc--CCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCCHHHEEECCCCCEEEcccccceeecCC
Confidence 99999999999754 234678999999999999999999999 9999999999999999999999999999876321
Q ss_pred CCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccccccCcc
Q 035998 899 YDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVLDPF 978 (1020)
Q Consensus 899 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 978 (1020)
.......+||+.|||||++.+..|+.++||||+||++|||+||+.||..... ......+..... ..
T Consensus 179 --~~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~------~~~~~~i~~~~~-~~----- 244 (350)
T 4b9d_A 179 --VELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSM------KNLVLKIISGSF-PP----- 244 (350)
T ss_dssp --HHHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSH------HHHHHHHHHTCC-CC-----
T ss_pred --cccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH------HHHHHHHHcCCC-CC-----
Confidence 1223456899999999999999999999999999999999999999974321 112222222111 11
Q ss_pred ccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 979 IYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 979 ~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
.... ...++.+++.+||+.||++|||++|+++
T Consensus 245 ~~~~----~s~~~~~li~~~L~~dP~~R~s~~e~l~ 276 (350)
T 4b9d_A 245 VSLH----YSYDLRSLVSQLFKRNPRDRPSVNSILE 276 (350)
T ss_dssp CCTT----SCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred CCcc----CCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 1111 1235889999999999999999999986
No 23
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=100.00 E-value=1.8e-48 Score=428.59 Aligned_cols=249 Identities=24% Similarity=0.336 Sum_probs=207.7
Q ss_pred cCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEEEec
Q 035998 742 NNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIYSFM 820 (1020)
Q Consensus 742 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 820 (1020)
..|++.+.||+|+||+||+|+.+ +|+.||||++........+.+.+|++++++++|||||+++++|.+.+..|+|||||
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 153 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 153 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCC
Confidence 56899999999999999999875 69999999997654444556889999999999999999999999999999999999
Q ss_pred cCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccCCCC
Q 035998 821 ENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILSPYD 900 (1020)
Q Consensus 821 ~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~ 900 (1020)
+||+|.+++... .+++.++..++.||+.||+|||++ +||||||||+|||++.+|.+||+|||+|+.....
T Consensus 154 ~gg~L~~~l~~~-----~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~-- 223 (346)
T 4fih_A 154 EGGALTDIVTHT-----RMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKE-- 223 (346)
T ss_dssp TTEEHHHHHHHS-----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSS--
T ss_pred CCCcHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEECCCCCEEEecCcCceecCCC--
Confidence 999999998753 589999999999999999999999 9999999999999999999999999999876432
Q ss_pred cccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccccccCcccc
Q 035998 901 THVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVLDPFIY 980 (1020)
Q Consensus 901 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 980 (1020)
.......+||+.|||||++.+..|+.++||||+||++|||++|+.||..... ......+.... ......
T Consensus 224 ~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~------~~~~~~i~~~~-~~~~~~---- 292 (346)
T 4fih_A 224 VPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP------LKAMKMIRDNL-PPRLKN---- 292 (346)
T ss_dssp SCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH------HHHHHHHHHSS-CCCCSC----
T ss_pred CCcccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH------HHHHHHHHcCC-CCCCCc----
Confidence 2234557899999999999999999999999999999999999999974321 11112221111 111111
Q ss_pred CccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 981 DKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 981 ~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
......++.+++.+||+.||++|||++|+++
T Consensus 293 ---~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~ 323 (346)
T 4fih_A 293 ---LHKVSPSLKGFLDRLLVRDPAQRATAAELLK 323 (346)
T ss_dssp ---GGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred ---cccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 1112236789999999999999999999987
No 24
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=100.00 E-value=1.3e-48 Score=428.71 Aligned_cols=253 Identities=23% Similarity=0.218 Sum_probs=205.9
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEEEe
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIYSF 819 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 819 (1020)
.+.|+..++||+|+||.||+|+++ +|+.||||+++.+.. ..+|++++++++|||||++++++.+.+..|+||||
T Consensus 57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy 131 (336)
T 4g3f_A 57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVREGPWVNIFMEL 131 (336)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred hhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh-----HHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEec
Confidence 356788899999999999999875 689999999976532 24699999999999999999999999999999999
Q ss_pred ccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCC-CeEEeeccccccccCC
Q 035998 820 MENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNF-GAHLADFGLARLILSP 898 (1020)
Q Consensus 820 ~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~-~~kl~Dfg~~~~~~~~ 898 (1020)
|+||+|.+++++. ..+++.++..++.||+.||+|||++ +||||||||+|||++.+| ++||+|||+|+.....
T Consensus 132 ~~gg~L~~~l~~~----~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~ 204 (336)
T 4g3f_A 132 LEGGSLGQLIKQM----GCLPEDRALYYLGQALEGLEYLHTR---RILHGDVKADNVLLSSDGSRAALCDFGHALCLQPD 204 (336)
T ss_dssp CTTCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCCGGGEEECTTSCCEEECCCTTCEEC---
T ss_pred cCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHC---CceecccCHHHEEEeCCCCEEEEeeCCCCeEccCC
Confidence 9999999999865 4689999999999999999999999 999999999999999987 6999999999876533
Q ss_pred CCc---ccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhccccccc
Q 035998 899 YDT---HVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVL 975 (1020)
Q Consensus 899 ~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 975 (1020)
... ......+||+.|||||++.+..|+.++||||+||++|||+||+.||......+....+ .. ......
T Consensus 205 ~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i---~~--~~~~~~--- 276 (336)
T 4g3f_A 205 GLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLKI---AS--EPPPIR--- 276 (336)
T ss_dssp ---------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHHHH---HH--SCCGGG---
T ss_pred CcccceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHH---Hc--CCCCch---
Confidence 211 1123457999999999999999999999999999999999999999865544332211 11 111000
Q ss_pred CccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 976 DPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 976 d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
..++.....+.+++.+||+.||++|||++|+++.|...
T Consensus 277 ------~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~ 314 (336)
T 4g3f_A 277 ------EIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKA 314 (336)
T ss_dssp ------GSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred ------hcCccCCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHH
Confidence 11112234688999999999999999999999987654
No 25
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=100.00 E-value=1.5e-48 Score=422.69 Aligned_cols=248 Identities=23% Similarity=0.347 Sum_probs=207.7
Q ss_pred cCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc---hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEE
Q 035998 742 NNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC---GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIY 817 (1020)
Q Consensus 742 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 817 (1020)
++|++.+.||+|+||+||+|+.. +|+.||||++.+.. ....+.+.+|++++++++|||||++++++.+++..|+||
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm 111 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 111 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 46999999999999999999864 78999999997542 223467899999999999999999999999999999999
Q ss_pred EeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccC
Q 035998 818 SFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILS 897 (1020)
Q Consensus 818 e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~ 897 (1020)
||++||+|.+++.+. ..+++.++..++.||+.||+|||++ +||||||||+|||++.++.+||+|||+|+.+..
T Consensus 112 Ey~~gG~L~~~i~~~----~~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~ 184 (311)
T 4aw0_A 112 SYAKNGELLKYIRKI----GSFDETCTRFYTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSP 184 (311)
T ss_dssp CCCTTEEHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECCT
T ss_pred ecCCCCCHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEEcCCCCEEEEEcCCceecCC
Confidence 999999999999865 4689999999999999999999999 999999999999999999999999999998754
Q ss_pred CCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccccccCc
Q 035998 898 PYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVLDP 977 (1020)
Q Consensus 898 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 977 (1020)
..........+||+.|||||++.++.|+.++||||+||++|||+||+.||..... .... ..+..... ...
T Consensus 185 ~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~---~~~~---~~i~~~~~--~~p-- 254 (311)
T 4aw0_A 185 ESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNE---GLIF---AKIIKLEY--DFP-- 254 (311)
T ss_dssp TTTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHH---HHHHHTCC--CCC--
T ss_pred CCCcccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH---HHHH---HHHHcCCC--CCC--
Confidence 4334445567899999999999999999999999999999999999999974321 1111 12211110 110
Q ss_pred cccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHH
Q 035998 978 FIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLV 1013 (1020)
Q Consensus 978 ~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl 1013 (1020)
... ..++.+++.+|++.||++|||++|++
T Consensus 255 ---~~~----s~~~~dli~~lL~~dp~~R~t~~e~~ 283 (311)
T 4aw0_A 255 ---EKF----FPKARDLVEKLLVLDATKRLGCEEME 283 (311)
T ss_dssp ---TTC----CHHHHHHHHHHSCSSGGGSTTSGGGT
T ss_pred ---ccc----CHHHHHHHHHHccCCHhHCcChHHHc
Confidence 111 23578999999999999999999863
No 26
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=100.00 E-value=3.5e-48 Score=431.02 Aligned_cols=269 Identities=27% Similarity=0.397 Sum_probs=217.3
Q ss_pred HHHHHHhccCCCcCCeeeccCCeEEEEEEeC------CCCEEEEEEecCCch-hhHHHHHHHHHHHHHcCC-CccceEee
Q 035998 734 IDDILESTNNFDQANIIGCGGFGLVYRATLP------DGRNVAIKRLSGDCG-QMEREFRAEVEALSRAQH-PNLVHLQG 805 (1020)
Q Consensus 734 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h-~niv~l~~ 805 (1020)
.+++....++|++.+.||+|+||+||+|++. .++.||||++..... ...+++.+|++++++++| ||||++++
T Consensus 56 ~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g 135 (353)
T 4ase_A 56 ASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLG 135 (353)
T ss_dssp HHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred CcccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEEE
Confidence 3445556788999999999999999999854 235799999976543 335679999999999965 89999999
Q ss_pred EEecc-CceEEEEEeccCCChhhhhhhcCC------------CCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCC
Q 035998 806 YCMHK-NDRLLIYSFMENGSLDYWLHEKLD------------GPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIK 872 (1020)
Q Consensus 806 ~~~~~-~~~~lv~e~~~~g~L~~~l~~~~~------------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk 872 (1020)
+|.+. ...++|||||++|+|.++++.... ....+++.++..++.|||+||+|||++ +|||||||
T Consensus 136 ~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~---~iiHRDLK 212 (353)
T 4ase_A 136 ACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLA 212 (353)
T ss_dssp EECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCS
T ss_pred EEEecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhC---CeecCccC
Confidence 99765 568999999999999999976422 134689999999999999999999999 99999999
Q ss_pred CCCEEEcCCCCeEEeeccccccccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHc-CCCCCCCCC
Q 035998 873 SSNILLDGNFGAHLADFGLARLILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLT-GKRPMDMCK 951 (1020)
Q Consensus 873 p~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-g~~pf~~~~ 951 (1020)
|+|||++.++.+||+|||+|+...............||+.|||||++.++.|+.++|||||||++|||+| |+.||....
T Consensus 213 ~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~ 292 (353)
T 4ase_A 213 ARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVK 292 (353)
T ss_dssp GGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC
T ss_pred ccceeeCCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCC
Confidence 9999999999999999999997755444444556789999999999999999999999999999999998 999997644
Q ss_pred CCCcccHHHHHHHHHhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhcC
Q 035998 952 PKGSRDLISWVIRMRQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSII 1020 (1020)
Q Consensus 952 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~il 1020 (1020)
..+ .... ....... ... +.....++.+++.+||+.||++||||+|+++.|++++
T Consensus 293 ~~~--~~~~---~i~~g~~-~~~---------p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~ll 346 (353)
T 4ase_A 293 IDE--EFCR---RLKEGTR-MRA---------PDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLL 346 (353)
T ss_dssp CSH--HHHH---HHHHTCC-CCC---------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHH--HHHH---HHHcCCC-CCC---------CccCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHH
Confidence 321 1111 1111111 111 1112246889999999999999999999999998764
No 27
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.7e-47 Score=457.43 Aligned_cols=474 Identities=19% Similarity=0.211 Sum_probs=386.7
Q ss_pred EecCCCcccccccccccCCCCCcEEecCCCCCCCCCCccccCCCCCCeeeccCCCCCCCCCCcc-CCCCcceeeeccCcc
Q 035998 90 LFLYKRRLKGKLSESLGNLVQLRFLNLSHNLLKGTVPVSLVNLPNLEVLDLSSNDLSGPLPQTI-NLPSIQVLDISSNSL 168 (1020)
Q Consensus 90 l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-~l~~L~~L~Ls~N~l 168 (1020)
.+.++++++ .+|..+. ++|++|+|++|++++..|..|+++++|++|+|++|++++.+|..+ ++++|++|+|++|++
T Consensus 10 c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 86 (549)
T 2z81_A 10 CDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86 (549)
T ss_dssp EECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc
Confidence 677888887 5676665 799999999999998889999999999999999999999998888 899999999999999
Q ss_pred CCCCCccccccCCcccEEEccCCCCCC-CCCCccccccccccccccccccccccc-hhhhhhcccccccccccccCCCCC
Q 035998 169 NGSVPTSICKNSSRIRVINLSVNYFSG-TLSPGLGNCASLEHLCLGMNDLTGGIA-DDIFQLQKLRLLGLQDNQLSGKLS 246 (1020)
Q Consensus 169 ~~~ip~~~~~~~~~L~~L~L~~N~l~~-~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~ 246 (1020)
+ .+|...+..+++|++|+|++|.+++ ..|..++++++|++|++++|.+.+.+| ..+.++++|++|++++|++++..|
T Consensus 87 ~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 165 (549)
T 2z81_A 87 S-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS 165 (549)
T ss_dssp C-SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred C-ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh
Confidence 9 5555555789999999999999997 467789999999999999999544554 689999999999999999999999
Q ss_pred cccccCCCccEEEccCCcCcccCcccccCCcccceeecccccccccC--C-CCCcCCcccccccccccccccccc----c
Q 035998 247 PSIADLSNLVRLDVSSNNFSGNIPDVFAGLGEFQYLVAHSNRFTGRI--P-HSLSNSPTLNLLNLRNNSLDGSLL----L 319 (1020)
Q Consensus 247 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--p-~~~~~l~~L~~L~L~~N~l~~~~~----~ 319 (1020)
..+..+++|++|+++.|.+....+..+..+++|++|++++|++++.. | .....+++|+.|++++|.+++..+ .
T Consensus 166 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 245 (549)
T 2z81_A 166 QSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLK 245 (549)
T ss_dssp TTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHG
T ss_pred hhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHH
Confidence 99999999999999999997544444567999999999999999753 2 234567899999999999886544 3
Q ss_pred CCCCCCCcCEEEcCCCccCCCC------CCCCCCCCCCCeEecCCCccccc-----CcccccCCCCCCeeeCCCCCCcch
Q 035998 320 NCPALTNLTSLDLGTNKFNGPL------PTNLPRCRKLKNINLARNNFSGQ-----IPETYKNFESLSYLSLSNSSIYNL 388 (1020)
Q Consensus 320 ~~~~l~~L~~L~L~~N~l~~~~------p~~l~~l~~L~~L~L~~N~l~~~-----~p~~~~~l~~L~~L~l~~N~i~~l 388 (1020)
.+..+++|+.|++++|.+.+.. ...+..+.+|+.|++.++.+... .+..+....+|+.|++++|.+..+
T Consensus 246 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~i 325 (549)
T 2z81_A 246 LLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLV 325 (549)
T ss_dssp GGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCC
T ss_pred HhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccC
Confidence 3456789999999999987532 23456778888999888876532 122233456788888888888777
Q ss_pred hhHHHHHhhhcccchhhhhccccCCCCCCCccccccCceEEEecccccccccch---hhhcCCCCcEEeccccccccccc
Q 035998 389 SSALQVLQQCRNLTTLVLTLNFRNEKLPTDPRLHFANLKVLVIASCGLRGSIPQ---WLRGCSKLQLVDLSWNQLSGTIP 465 (1020)
Q Consensus 389 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~---~l~~l~~L~~L~Ls~N~l~~~~p 465 (1020)
|..+ + ..+++|+.|++++|.+.+.+|. .++.+++|++|+|++|++++..+
T Consensus 326 p~~~--~-------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 378 (549)
T 2z81_A 326 PCSF--S-------------------------QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK 378 (549)
T ss_dssp CHHH--H-------------------------HHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHH
T ss_pred CHHH--H-------------------------hcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccccccc
Confidence 6542 1 2355677788888888887754 47889999999999999986543
Q ss_pred --ccccCcCcCcEEeCCCCcccccCCCCCCCCcccccccCcCCCCCCCcccceeecccccccccccccCCCCeeecccCc
Q 035998 466 --VWFGGFQDLFYLDLSNNTFTGEIPKNLTGLPSLITRNISLEEPSPDFPFFMRRNVSARGLQYNQIWSFPPTIDLSLNR 543 (1020)
Q Consensus 466 --~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~s~~~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~l~Ls~N~ 543 (1020)
..+..+++|++|+|++|+++ .+|..+..+++|+ .|++++|+
T Consensus 379 ~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~------------------------------------~L~Ls~N~ 421 (549)
T 2z81_A 379 TGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMR------------------------------------FLNLSSTG 421 (549)
T ss_dssp HHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCC------------------------------------EEECTTSC
T ss_pred chhhhhcCCCCCEEECCCCCCc-cCChhhccccccc------------------------------------EEECCCCC
Confidence 56899999999999999999 7888888877773 56777777
Q ss_pred cccCCCccccCCCcceEEEecCCcceeccCccccCCCcccEEEccCCcccccCCccccccccccccccccccccccCCC-
Q 035998 544 LDGSIWPEFGNLKKLHVFDLKHNNLSGPIPSELTGMTSLETLDLSYNNLSGAIPISLEKLSFLSKFSVANNHLTGRIPS- 622 (1020)
Q Consensus 544 l~~~~~~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~~p~- 622 (1020)
|++ +|..+ .++|+.|+|++|+|++. + ..+++|++|||++|+|+ .+|. ...+++|++|+|++|++++.+|.
T Consensus 422 l~~-l~~~~--~~~L~~L~Ls~N~l~~~-~---~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~ 492 (549)
T 2z81_A 422 IRV-VKTCI--PQTLEVLDVSNNNLDSF-S---LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGI 492 (549)
T ss_dssp CSC-CCTTS--CTTCSEEECCSSCCSCC-C---CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTG
T ss_pred ccc-ccchh--cCCceEEECCCCChhhh-c---ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHH
Confidence 764 23322 25899999999999964 2 57899999999999999 7887 57899999999999999998886
Q ss_pred CCCCCCcCCccccCCCCC
Q 035998 623 GGQFQTFPNSSFDGNNLC 640 (1020)
Q Consensus 623 ~~~~~~~~~~~~~~n~l~ 640 (1020)
.+.+..+....+.+|++.
T Consensus 493 ~~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 493 FDRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp GGGCTTCCEEECCSSCBC
T ss_pred HhcCcccCEEEecCCCcc
Confidence 356778888899999863
No 28
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.9e-46 Score=459.77 Aligned_cols=485 Identities=19% Similarity=0.196 Sum_probs=316.2
Q ss_pred ceEEcCCCCCCCCCCCCCCCceEEEecCCCcccccccccccCCCCCcEEecCCCCCCCCCCccccCCCCCCeeeccCCCC
Q 035998 66 VGITCNSSSSLGLNDSIGSGRVTGLFLYKRRLKGKLSESLGNLVQLRFLNLSHNLLKGTVPVSLVNLPNLEVLDLSSNDL 145 (1020)
Q Consensus 66 ~gv~C~~~~~~~~~~~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 145 (1020)
..|.|+..+.+.||.+++ ..++.|+|++|.|++..+.+|.++++|++|+|++|+|++..|.+|++|++|++|+|++|+|
T Consensus 34 ~~~~c~~~~l~~vP~~lp-~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l 112 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 112 (635)
T ss_dssp TEEECTTSCCSSCCSSSC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CEEECCCCCcCccCCCCC-cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC
Confidence 468999999999999886 5899999999999988888999999999999999999977788899999999999999999
Q ss_pred CCCCCCcc-CCCCcceeeeccCccCCCCCccccccCCcccEEEccCCCCCC-CCCCccccccccccccccccccccccch
Q 035998 146 SGPLPQTI-NLPSIQVLDISSNSLNGSVPTSICKNSSRIRVINLSVNYFSG-TLSPGLGNCASLEHLCLGMNDLTGGIAD 223 (1020)
Q Consensus 146 ~~~~p~~~-~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~-~~~~~l~~l~~L~~L~L~~N~l~~~~~~ 223 (1020)
++.++..+ ++++|++|+|++|+++ .+|...+..+++|++|+|++|++++ ..|..++.+++|++|+|++|++++..+.
T Consensus 113 ~~l~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 191 (635)
T 4g8a_A 113 QSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 191 (635)
T ss_dssp CEECGGGGTTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred CCCCHHHhcCCCCCCEEECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence 99888888 8999999999999998 6777777899999999999999986 4678889999999999999999999999
Q ss_pred hhhhhcccc----cccccccccCCCCCcccccCCCccEEEccCCcCcc-cCcccccCCcccceeeccccc------ccc-
Q 035998 224 DIFQLQKLR----LLGLQDNQLSGKLSPSIADLSNLVRLDVSSNNFSG-NIPDVFAGLGEFQYLVAHSNR------FTG- 291 (1020)
Q Consensus 224 ~~~~l~~L~----~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~------l~~- 291 (1020)
.+..+.+++ .++++.|.++...+..+ ....+..+++++|..+. ..+..+.++..++...+..+. +..
T Consensus 192 ~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~ 270 (635)
T 4g8a_A 192 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 270 (635)
T ss_dssp GGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred cccchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccc
Confidence 999887765 57789999985554444 44567888888886553 223445555555544433221 111
Q ss_pred --------------------------cCCCCCcCCcccccccccccccccccccCCCCCCCcCEEEcCCCccCCCCCCCC
Q 035998 292 --------------------------RIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNKFNGPLPTNL 345 (1020)
Q Consensus 292 --------------------------~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l 345 (1020)
..+..+....+++.+++.+|.+..... +....+|+.|++.+|++.+..+.
T Consensus 271 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~-- 346 (635)
T 4g8a_A 271 DKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTL-- 346 (635)
T ss_dssp CTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG--GGSCCCCSEEEEESCEESSCCCC--
T ss_pred cccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc--cccchhhhhhhcccccccCcCcc--
Confidence 122334444555666666665554332 33345667777777766643332
Q ss_pred CCCCCCCeEecCCCcccccCcccccCCCCCCeeeCCCCCCcchhhHHHHHhhhcccchhhhhccccCCCCCCCccccccC
Q 035998 346 PRCRKLKNINLARNNFSGQIPETYKNFESLSYLSLSNSSIYNLSSALQVLQQCRNLTTLVLTLNFRNEKLPTDPRLHFAN 425 (1020)
Q Consensus 346 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~i~~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 425 (1020)
.+..|+.+++++|.+... ..+..+++|+.|++++|.+............+.+|+.+
T Consensus 347 -~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L--------------------- 402 (635)
T 4g8a_A 347 -KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYL--------------------- 402 (635)
T ss_dssp -BCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEE---------------------
T ss_pred -cchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhh---------------------
Confidence 345666677776666532 23345667777777777765443322333344444444
Q ss_pred ceEEEecccccccccchhhhcCCCCcEEeccccccccccc-ccccCcCcCcEEeCCCCcccccCCCCCCCCcccccccCc
Q 035998 426 LKVLVIASCGLRGSIPQWLRGCSKLQLVDLSWNQLSGTIP-VWFGGFQDLFYLDLSNNTFTGEIPKNLTGLPSLITRNIS 504 (1020)
Q Consensus 426 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~s 504 (1020)
++..|.... .+..+..+++|+.+++++|+.....+ ..|..+.+++.+++++|.+++..|..+..+++|+
T Consensus 403 ----~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~----- 472 (635)
T 4g8a_A 403 ----DLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE----- 472 (635)
T ss_dssp ----ECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC-----
T ss_pred ----hcccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhh-----
Confidence 444444432 23334445555555555554443332 2344555555555555555555554444444432
Q ss_pred CCCCCCCcccceeecccccccccccccCCCCeeecccCcc-ccCCCccccCCCcceEEEecCCcceeccCccccCCCccc
Q 035998 505 LEEPSPDFPFFMRRNVSARGLQYNQIWSFPPTIDLSLNRL-DGSIWPEFGNLKKLHVFDLKHNNLSGPIPSELTGMTSLE 583 (1020)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~l~Ls~N~l-~~~~~~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 583 (1020)
.|+|++|++ .+..|..|..+++|++|+|++|+|++..|..|+++++|+
T Consensus 473 -------------------------------~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~ 521 (635)
T 4g8a_A 473 -------------------------------VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 521 (635)
T ss_dssp -------------------------------EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred -------------------------------hhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCC
Confidence 334444432 223344455555555555555555554455555555555
Q ss_pred EEEccCCcccccCCccccccccccccccccccccccCCC
Q 035998 584 TLDLSYNNLSGAIPISLEKLSFLSKFSVANNHLTGRIPS 622 (1020)
Q Consensus 584 ~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~~p~ 622 (1020)
+|+|++|+|++..|..|..+++|+.|+|++|+|++.+|.
T Consensus 522 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 560 (635)
T 4g8a_A 522 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 560 (635)
T ss_dssp EEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSS
T ss_pred EEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHH
Confidence 555555555544444555555555555555555554443
No 29
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=100.00 E-value=1.6e-47 Score=413.14 Aligned_cols=246 Identities=25% Similarity=0.386 Sum_probs=196.1
Q ss_pred CcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc--hhhHHHHHHHHHHHHHcCCCccceEeeEEec----cCceEEEE
Q 035998 745 DQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC--GQMEREFRAEVEALSRAQHPNLVHLQGYCMH----KNDRLLIY 817 (1020)
Q Consensus 745 ~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~----~~~~~lv~ 817 (1020)
++.+.||+|+||+||+|++. +++.||||++.... ....+.|.+|++++++++|||||+++++|.+ +...|+||
T Consensus 29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvm 108 (290)
T 3fpq_A 29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT 108 (290)
T ss_dssp EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEE
T ss_pred EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEE
Confidence 55678999999999999865 68899999986542 3344678999999999999999999999875 34578999
Q ss_pred EeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcC-CCCeEEeecccccccc
Q 035998 818 SFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDG-NFGAHLADFGLARLIL 896 (1020)
Q Consensus 818 e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~-~~~~kl~Dfg~~~~~~ 896 (1020)
|||++|+|.+++.+. ..+++..+..++.||+.||+|||++ .++||||||||+|||++. ++.+||+|||+|+...
T Consensus 109 Ey~~gg~L~~~l~~~----~~l~~~~~~~~~~qi~~aL~ylH~~-~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~ 183 (290)
T 3fpq_A 109 ELMTSGTLKTYLKRF----KVMKIKVLRSWCRQILKGLQFLHTR-TPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKR 183 (290)
T ss_dssp ECCCSCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHHTS-SSCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCC
T ss_pred eCCCCCCHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHC-CCCEEecccChhheeEECCCCCEEEEeCcCCEeCC
Confidence 999999999999875 4689999999999999999999998 112999999999999984 7999999999998642
Q ss_pred CCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccccccC
Q 035998 897 SPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVLD 976 (1020)
Q Consensus 897 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 976 (1020)
. ......+||+.|||||++.+ .|+.++||||+||++|||+||+.||..... .......+..... +.
T Consensus 184 ~----~~~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~~~~-----~~~~~~~i~~~~~-~~--- 249 (290)
T 3fpq_A 184 A----SFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQN-----AAQIYRRVTSGVK-PA--- 249 (290)
T ss_dssp T----TSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSS-----HHHHHHHHTTTCC-CG---
T ss_pred C----CccCCcccCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCCCCCCCCCc-----HHHHHHHHHcCCC-CC---
Confidence 2 23445789999999998865 699999999999999999999999964321 1111111211111 11
Q ss_pred ccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 977 PFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 977 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
....... .++.+++.+||+.||++|||++|+++
T Consensus 250 -~~~~~~~----~~~~~li~~~L~~dP~~R~s~~e~l~ 282 (290)
T 3fpq_A 250 -SFDKVAI----PEVKEIIEGCIRQNKDERYSIKDLLN 282 (290)
T ss_dssp -GGGGCCC----HHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred -CCCccCC----HHHHHHHHHHccCChhHCcCHHHHhc
Confidence 1111111 25789999999999999999999987
No 30
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=8.7e-48 Score=474.77 Aligned_cols=441 Identities=19% Similarity=0.228 Sum_probs=346.9
Q ss_pred CCCcEEecCCCCCCCCCCccccCCCCCCeeec-cCCCCCCCCCCcc-CC----CC-----cceeee-------ccCccCC
Q 035998 109 VQLRFLNLSHNLLKGTVPVSLVNLPNLEVLDL-SSNDLSGPLPQTI-NL----PS-----IQVLDI-------SSNSLNG 170 (1020)
Q Consensus 109 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L-~~n~l~~~~p~~~-~l----~~-----L~~L~L-------s~N~l~~ 170 (1020)
.+++.|+|++|+++|.+|++|++|++|++|+| ++|.++|..|... .. .. ++..++ ....+.+
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57899999999999999999999999999999 9998887744321 11 00 000000 0000000
Q ss_pred -----------CCCccccccCCcccEEEcc--CCCCCCCCCCcccccccccccccccccccc-----------------c
Q 035998 171 -----------SVPTSICKNSSRIRVINLS--VNYFSGTLSPGLGNCASLEHLCLGMNDLTG-----------------G 220 (1020)
Q Consensus 171 -----------~ip~~~~~~~~~L~~L~L~--~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~-----------------~ 220 (1020)
..+.. ......++.+.+. .|++++ +|..|+++++|++|+|++|++++ .
T Consensus 403 l~~~~l~~~~~~~~i~-~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIK-KDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHTCTTSCCCC-CCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHhhhCccccccc-cccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 00000 0112223333333 377777 78788888888888888888887 3
Q ss_pred cchhhh--hhcccccccccccccCCCCCcccccCCCccEEEccCCc-Ccc-cCcccccCCc-------ccceeecccccc
Q 035998 221 IADDIF--QLQKLRLLGLQDNQLSGKLSPSIADLSNLVRLDVSSNN-FSG-NIPDVFAGLG-------EFQYLVAHSNRF 289 (1020)
Q Consensus 221 ~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~-~~p~~~~~l~-------~L~~L~L~~N~l 289 (1020)
+|..++ ++++|++|+|++|++.+.+|..|.++++|++|+|++|+ +++ .+|..++.++ +|++|++++|++
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 888877 99999999999999999999999999999999999998 888 7888777666 999999999999
Q ss_pred cccCCC--CCcCCcccccccccccccccccccCCCCCCCcCEEEcCCCccCCCCCCCCCCCCC-CCeEecCCCcccccCc
Q 035998 290 TGRIPH--SLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNKFNGPLPTNLPRCRK-LKNINLARNNFSGQIP 366 (1020)
Q Consensus 290 ~~~~p~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~-L~~L~L~~N~l~~~~p 366 (1020)
+ .+|. .++++++|+.|+|++|+++ .+| .+..+++|+.|+|++|+++ .+|..+..+++ |+.|+|++|+++ .+|
T Consensus 561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp 635 (876)
T 4ecn_A 561 E-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIP 635 (876)
T ss_dssp C-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCC
T ss_pred C-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCc
Confidence 9 7787 8999999999999999998 666 8889999999999999999 88888999998 999999999998 788
Q ss_pred ccccCCCC--CCeeeCCCCCCcchhhHHHHHhhhcccchhhhhccccCCCCCCCccccccCceEEEecccccccccchh-
Q 035998 367 ETYKNFES--LSYLSLSNSSIYNLSSALQVLQQCRNLTTLVLTLNFRNEKLPTDPRLHFANLKVLVIASCGLRGSIPQW- 443 (1020)
Q Consensus 367 ~~~~~l~~--L~~L~l~~N~i~~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~- 443 (1020)
..+..+.. |+.|++++|++......+ .........++|+.|++++|.+.. +|..
T Consensus 636 ~~~~~~~~~~L~~L~Ls~N~l~g~ip~l----------------------~~~l~~~~~~~L~~L~Ls~N~L~~-lp~~~ 692 (876)
T 4ecn_A 636 NIFNAKSVYVMGSVDFSYNKIGSEGRNI----------------------SCSMDDYKGINASTVTLSYNEIQK-FPTEL 692 (876)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTSSSC----------------------SSCTTTCCCCCEEEEECCSSCCCS-CCHHH
T ss_pred hhhhccccCCCCEEECcCCcCCCccccc----------------------hhhhccccCCCcCEEEccCCcCCc-cCHHH
Confidence 88877754 999999999876532110 001111234578999999999994 5554
Q ss_pred hhcCCCCcEEecccccccccccccccC--------cCcCcEEeCCCCcccccCCCCCC--CCcccccccCcCCCCCCCcc
Q 035998 444 LRGCSKLQLVDLSWNQLSGTIPVWFGG--------FQDLFYLDLSNNTFTGEIPKNLT--GLPSLITRNISLEEPSPDFP 513 (1020)
Q Consensus 444 l~~l~~L~~L~Ls~N~l~~~~p~~~~~--------l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~l~~s~~~~~~~~~ 513 (1020)
+..+++|+.|+|++|+|+ .+|..+.. +++|++|+|++|+++ .+|..+. .+++|
T Consensus 693 ~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L--------------- 755 (876)
T 4ecn_A 693 FATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYL--------------- 755 (876)
T ss_dssp HHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTC---------------
T ss_pred HccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCc---------------
Confidence 458999999999999999 66665443 239999999999999 7888776 77776
Q ss_pred cceeecccccccccccccCCCCeeecccCccccCCCccccCCCcceEEEecC------CcceeccCccccCCCcccEEEc
Q 035998 514 FFMRRNVSARGLQYNQIWSFPPTIDLSLNRLDGSIWPEFGNLKKLHVFDLKH------NNLSGPIPSELTGMTSLETLDL 587 (1020)
Q Consensus 514 ~~~~~~~~~~~l~~n~~~~~~~~l~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~------N~l~~~~p~~~~~l~~L~~L~L 587 (1020)
+.|+|++|+|++ +|..++.+++|+.|+|++ |++.+.+|..|+++++|+.|+|
T Consensus 756 ---------------------~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~L 813 (876)
T 4ecn_A 756 ---------------------SNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813 (876)
T ss_dssp ---------------------CEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEEC
T ss_pred ---------------------CEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEEC
Confidence 468889999998 788999999999999976 8889999999999999999999
Q ss_pred cCCcccccCCccccccccccccccccccccccCC
Q 035998 588 SYNNLSGAIPISLEKLSFLSKFSVANNHLTGRIP 621 (1020)
Q Consensus 588 s~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~~p 621 (1020)
++|+| +.+|..+. ++|+.|+|++|++....+
T Consensus 814 s~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~ 844 (876)
T 4ecn_A 814 GSNDI-RKVDEKLT--PQLYILDIADNPNISIDV 844 (876)
T ss_dssp CSSCC-CBCCSCCC--SSSCEEECCSCTTCEEEC
T ss_pred CCCCC-CccCHhhc--CCCCEEECCCCCCCccCh
Confidence 99999 69999876 699999999999876544
No 31
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=2.8e-47 Score=407.36 Aligned_cols=248 Identities=22% Similarity=0.375 Sum_probs=191.9
Q ss_pred cCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc---hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEE
Q 035998 742 NNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC---GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIY 817 (1020)
Q Consensus 742 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 817 (1020)
++|++.+.||+|+||+||+|+.. +|+.||||++.+.. ....+.+.+|++++++++|||||++++++.+++..|+||
T Consensus 13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivm 92 (275)
T 3hyh_A 13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI 92 (275)
T ss_dssp -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEE
Confidence 57999999999999999999864 69999999997543 233467899999999999999999999999999999999
Q ss_pred EeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccC
Q 035998 818 SFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILS 897 (1020)
Q Consensus 818 e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~ 897 (1020)
||+ +|+|.+++.+. ..+++.++..++.||+.||+|||++ +|+||||||+|||++.++.+||+|||+|+...+
T Consensus 93 Ey~-~g~L~~~l~~~----~~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~ 164 (275)
T 3hyh_A 93 EYA-GNELFDYIVQR----DKMSEQEARRFFQQIISAVEYCHRH---KIVHRDLKPENLLLDEHLNVKIADFGLSNIMTD 164 (275)
T ss_dssp ECC-CEEHHHHHHHS----CSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECTTCCEEECCSSCC-----
T ss_pred eCC-CCCHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCChHHeEECCCCCEEEeecCCCeecCC
Confidence 999 67999888764 4699999999999999999999999 999999999999999999999999999987533
Q ss_pred CCCcccccccccccCccCccccCCCCC-CchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccccccC
Q 035998 898 PYDTHVTTDLVGTLGYIPPEYGQASVA-TYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVLD 976 (1020)
Q Consensus 898 ~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 976 (1020)
.......+||+.|||||++.+..+ +.++||||+||++|||+||+.||..... ......+..... ..
T Consensus 165 ---~~~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~~------~~~~~~i~~~~~--~~-- 231 (275)
T 3hyh_A 165 ---GNFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESI------PVLFKNISNGVY--TL-- 231 (275)
T ss_dssp -------------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH------HHHHHHHHHTCC--CC--
T ss_pred ---CCccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCCH------HHHHHHHHcCCC--CC--
Confidence 223345789999999999988776 5899999999999999999999974321 111122211110 00
Q ss_pred ccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH--HHH
Q 035998 977 PFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS--WLD 1017 (1020)
Q Consensus 977 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~--~L~ 1017 (1020)
| .. ....+.+++.+||+.||++|||++|+++ |++
T Consensus 232 p---~~----~s~~~~~li~~~L~~dP~~R~s~~eil~hpw~k 267 (275)
T 3hyh_A 232 P---KF----LSPGAAGLIKRMLIVNPLNRISIHEIMQDDWFK 267 (275)
T ss_dssp C---TT----SCHHHHHHHHHHSCSSGGGSCCHHHHHHCHHHH
T ss_pred C---CC----CCHHHHHHHHHHccCChhHCcCHHHHHcCcccc
Confidence 0 11 1235789999999999999999999997 554
No 32
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=100.00 E-value=2.5e-47 Score=429.94 Aligned_cols=250 Identities=24% Similarity=0.337 Sum_probs=208.8
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEEEe
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIYSF 819 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 819 (1020)
.+.|++.+.||+|+||.||+|+.+ +|+.||||++........+.+.+|++++++++|||||+++++|.+.+..|+||||
T Consensus 150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy 229 (423)
T 4fie_A 150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEF 229 (423)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred hHhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeC
Confidence 357999999999999999999875 6999999999765544456788999999999999999999999999999999999
Q ss_pred ccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccCCC
Q 035998 820 MENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILSPY 899 (1020)
Q Consensus 820 ~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~ 899 (1020)
|+||+|.+++... .+++.++..++.||+.||+|||++ +||||||||+|||++.+|.+||+|||+|+.+...
T Consensus 230 ~~gG~L~~~i~~~-----~l~e~~~~~~~~qil~aL~ylH~~---~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~- 300 (423)
T 4fie_A 230 LEGGALTDIVTHT-----RMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKE- 300 (423)
T ss_dssp CTTEEHHHHHHHS-----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSTTTEEECTTCCEEECCCTTCEECCSS-
T ss_pred CCCCcHHHHHhcc-----CCCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCEEEecCccceECCCC-
Confidence 9999999998753 589999999999999999999999 9999999999999999999999999999876432
Q ss_pred CcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccccccCccc
Q 035998 900 DTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVLDPFI 979 (1020)
Q Consensus 900 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 979 (1020)
.......+||+.|||||++.+..|+.++||||+||++|||++|+.||..... ......+.... ......
T Consensus 301 -~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~------~~~~~~i~~~~-~~~~~~--- 369 (423)
T 4fie_A 301 -VPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP------LKAMKMIRDNL-PPRLKN--- 369 (423)
T ss_dssp -CCCBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH------HHHHHHHHHSC-CCCCSC---
T ss_pred -CccccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH------HHHHHHHHcCC-CCCCcc---
Confidence 2234567899999999999999999999999999999999999999974321 11112222111 111101
Q ss_pred cCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 980 YDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 980 ~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
... ....+.+|+.+||+.||++|||++|+++
T Consensus 370 ~~~----~s~~~~dli~~~L~~dP~~R~ta~ell~ 400 (423)
T 4fie_A 370 LHK----VSPSLKGFLDRLLVRDPAQRATAAELLK 400 (423)
T ss_dssp TTS----SCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred ccc----CCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 011 1235789999999999999999999987
No 33
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=1.1e-47 Score=421.06 Aligned_cols=267 Identities=27% Similarity=0.308 Sum_probs=202.4
Q ss_pred cCCCcCCeeeccCCeEEEEEEeCCCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCccceEeeEEeccC----ceEEEE
Q 035998 742 NNFDQANIIGCGGFGLVYRATLPDGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNLVHLQGYCMHKN----DRLLIY 817 (1020)
Q Consensus 742 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~----~~~lv~ 817 (1020)
++|.+.+.||+|+||+||+|++ +|+.||||++...... ...+++|+..+.+++|||||+++++|.+.+ ..++||
T Consensus 3 r~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~~~-~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~ 80 (303)
T 3hmm_A 3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREER-SWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS 80 (303)
T ss_dssp GGEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGGGHH-HHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred cEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccchh-hHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEe
Confidence 4577789999999999999998 5899999999754321 223345666667889999999999998764 468999
Q ss_pred EeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcC-----CCCeEecCCCCCCEEEcCCCCeEEeecccc
Q 035998 818 SFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSC-----EPHILHRDIKSSNILLDGNFGAHLADFGLA 892 (1020)
Q Consensus 818 e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~-----~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~ 892 (1020)
|||++|+|.++++.. .++++.+.+++.|+++||+|||+++ .++||||||||+|||++.++.+||+|||+|
T Consensus 81 Ey~~~gsL~~~l~~~-----~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla 155 (303)
T 3hmm_A 81 DYHEHGSLFDYLNRY-----TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA 155 (303)
T ss_dssp ECCTTCBHHHHHHHC-----CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTC
T ss_pred cCCCCCcHHHHHHhC-----CCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCC
Confidence 999999999999864 5899999999999999999999752 458999999999999999999999999999
Q ss_pred ccccCCCCc--ccccccccccCccCccccCCC------CCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCc--------c
Q 035998 893 RLILSPYDT--HVTTDLVGTLGYIPPEYGQAS------VATYKGDVYSFGVVLLELLTGKRPMDMCKPKGS--------R 956 (1020)
Q Consensus 893 ~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~------~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~--------~ 956 (1020)
+........ ......+||+.|||||++.+. .++.++|||||||++|||+||+.||........ .
T Consensus 156 ~~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~ 235 (303)
T 3hmm_A 156 VRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSD 235 (303)
T ss_dssp EEEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSS
T ss_pred ccccCCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhccccc
Confidence 877543322 122346799999999998764 467899999999999999999887754322111 0
Q ss_pred cHHHHHHHHHhhcccccccCcccc-CccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 957 DLISWVIRMRQENRESEVLDPFIY-DKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 957 ~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
............. ..+|.+. .....+....+.+++.+||+.||++||||+||++.|+++
T Consensus 236 ~~~~~~~~~~~~~----~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l 295 (303)
T 3hmm_A 236 PSVEEMRKVVCEQ----KLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQL 295 (303)
T ss_dssp CCHHHHHHHHTTS----CCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHH
T ss_pred chHHHHHHHHhcc----cCCCCCCccccchHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHH
Confidence 1111111111111 1122221 122345667789999999999999999999999999876
No 34
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.1e-47 Score=453.65 Aligned_cols=452 Identities=20% Similarity=0.219 Sum_probs=380.6
Q ss_pred cEEecCCCCCCCCCCccccCCCCCCeeeccCCCCCCCCCCcc-CCCCcceeeeccCccCCCCCccccccCCcccEEEccC
Q 035998 112 RFLNLSHNLLKGTVPVSLVNLPNLEVLDLSSNDLSGPLPQTI-NLPSIQVLDISSNSLNGSVPTSICKNSSRIRVINLSV 190 (1020)
Q Consensus 112 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~ 190 (1020)
++|++++|+++ .+|..+. ++|++|+|++|.+++.+|..+ ++++|++|+|++|++++..|. .+..+++|++|+|++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS-VFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGG-GGTTCTTCCEEECCS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChH-HhhcccCCCEEecCC
Confidence 58999999999 7888776 899999999999999988777 899999999999999954454 457899999999999
Q ss_pred CCCCCCCCCcccccccccccccccccccc-ccchhhhhhcccccccccccccCCCCCcccccCCCc--cEEEccCCcC--
Q 035998 191 NYFSGTLSPGLGNCASLEHLCLGMNDLTG-GIADDIFQLQKLRLLGLQDNQLSGKLSPSIADLSNL--VRLDVSSNNF-- 265 (1020)
Q Consensus 191 N~l~~~~~~~l~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L--~~L~Ls~N~l-- 265 (1020)
|+++ .+|.. .+++|++|+|++|++++ .+|..|+.+++|++|++++|++++ ..+..+++| ++|++++|.+
T Consensus 79 N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~ 152 (520)
T 2z7x_B 79 NKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYG 152 (520)
T ss_dssp SCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTT
T ss_pred Ccee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccc
Confidence 9999 56665 89999999999999997 578999999999999999999986 567888888 9999999999
Q ss_pred cccCcccccCCc-ccceeecccccccccCCC-CCcCCcccccccccccc-------cccccccCCCCCCCcCEEEcCCCc
Q 035998 266 SGNIPDVFAGLG-EFQYLVAHSNRFTGRIPH-SLSNSPTLNLLNLRNNS-------LDGSLLLNCPALTNLTSLDLGTNK 336 (1020)
Q Consensus 266 ~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~L~~N~-------l~~~~~~~~~~l~~L~~L~L~~N~ 336 (1020)
++..|..+..+. +...+++++|++.+.++. .+.++++|+.|++++|. +.+.++ .+..+++|+.|++++|+
T Consensus 153 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~ 231 (520)
T 2z7x_B 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIE 231 (520)
T ss_dssp SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEE
T ss_pred cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccc
Confidence 888898888876 455678899998876654 67889999999999998 777666 78889999999999999
Q ss_pred cCCCCCCCCC---CCCCCCeEecCCCcccccCcccc-----cCCCCCCeeeCCCCCCcchh-hHHHHHhhhcccchhhhh
Q 035998 337 FNGPLPTNLP---RCRKLKNINLARNNFSGQIPETY-----KNFESLSYLSLSNSSIYNLS-SALQVLQQCRNLTTLVLT 407 (1020)
Q Consensus 337 l~~~~p~~l~---~l~~L~~L~L~~N~l~~~~p~~~-----~~l~~L~~L~l~~N~i~~l~-~~~~~l~~l~~L~~L~l~ 407 (1020)
+++..+..+. ..++|++|++++|+++|.+|..+ ..+++|+.+++++|.+ .+| ..+..+..
T Consensus 232 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~---------- 300 (520)
T 2z7x_B 232 TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFS---------- 300 (520)
T ss_dssp EEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHH----------
T ss_pred cCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccc----------
Confidence 8754322211 24589999999999999999998 8999999999999998 666 22221111
Q ss_pred ccccCCCCCCCccccccCceEEEecccccccccchhhhcCCCCcEEecccccccccccccccCcCcCcEEeCCCCcccc-
Q 035998 408 LNFRNEKLPTDPRLHFANLKVLVIASCGLRGSIPQWLRGCSKLQLVDLSWNQLSGTIPVWFGGFQDLFYLDLSNNTFTG- 486 (1020)
Q Consensus 408 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~- 486 (1020)
-.+|+.|++++|.+.... .+..+++|++|++++|++++.+|.+++.+++|++|+|++|++++
T Consensus 301 ---------------~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 363 (520)
T 2z7x_B 301 ---------------NMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL 363 (520)
T ss_dssp ---------------TCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBH
T ss_pred ---------------cCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcc
Confidence 134677778887776432 12688999999999999999899999999999999999999996
Q ss_pred -cCCCCCCCCcccccccCcCCCCCCCcccceeecccccccccccccCCCCeeecccCccccCCCcc-ccCCCcceEEEec
Q 035998 487 -EIPKNLTGLPSLITRNISLEEPSPDFPFFMRRNVSARGLQYNQIWSFPPTIDLSLNRLDGSIWPE-FGNLKKLHVFDLK 564 (1020)
Q Consensus 487 -~~p~~~~~l~~L~~l~~s~~~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~l~Ls~N~l~~~~~~~-~~~L~~L~~L~Ls 564 (1020)
.+|..++++++| +.|++++|++++.+|.. |..+++|++|+|+
T Consensus 364 ~~~~~~~~~l~~L------------------------------------~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls 407 (520)
T 2z7x_B 364 SKIAEMTTQMKSL------------------------------------QQLDISQNSVSYDEKKGDCSWTKSLLSLNMS 407 (520)
T ss_dssp HHHHHHHTTCTTC------------------------------------CEEECCSSCCBCCGGGCSCCCCTTCCEEECC
T ss_pred ccchHHHhhCCCC------------------------------------CEEECCCCcCCcccccchhccCccCCEEECc
Confidence 566777888777 46888999999866654 8999999999999
Q ss_pred CCcceeccCccccCCCcccEEEccCCcccccCCccccccccccccccccccccccCCC-CCCCCCcCCccccCCCCCC
Q 035998 565 HNNLSGPIPSELTGMTSLETLDLSYNNLSGAIPISLEKLSFLSKFSVANNHLTGRIPS-GGQFQTFPNSSFDGNNLCG 641 (1020)
Q Consensus 565 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~~p~-~~~~~~~~~~~~~~n~l~~ 641 (1020)
+|++++.+|..+. ++|++|||++|+|+ .+|..+..+++|+.|++++|++++.++. ...+..+....+.+|++.+
T Consensus 408 ~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 408 SNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp SSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcc
Confidence 9999998888775 89999999999999 8999999999999999999999964443 3456677788889997543
No 35
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=100.00 E-value=4.4e-47 Score=411.58 Aligned_cols=247 Identities=23% Similarity=0.328 Sum_probs=196.6
Q ss_pred cCCCcCCeeeccCCeEEEEEEeC----CCCEEEEEEecCCch--hhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEE
Q 035998 742 NNFDQANIIGCGGFGLVYRATLP----DGRNVAIKRLSGDCG--QMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLL 815 (1020)
Q Consensus 742 ~~~~~~~~lg~G~~g~V~~~~~~----~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 815 (1020)
++|++.+.||+|+||+||+|+.. +++.||||++..... .....+.+|++++++++|||||++++++.+++..|+
T Consensus 24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~i 103 (304)
T 3ubd_A 24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYL 103 (304)
T ss_dssp GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEEE
T ss_pred cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEE
Confidence 57999999999999999999852 478999999975431 123457889999999999999999999999999999
Q ss_pred EEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccc
Q 035998 816 IYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLI 895 (1020)
Q Consensus 816 v~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~ 895 (1020)
||||++||+|.+++.+. ..+++.++..++.||+.||+|||++ +||||||||+|||++.+|.+||+|||+|+..
T Consensus 104 vmEy~~gg~L~~~l~~~----~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~ 176 (304)
T 3ubd_A 104 ILDFLRGGDLFTRLSKE----VMFTEEDVKFYLAELALALDHLHSL---GIIYRDLKPENILLDEEGHIKLTDFGLSKES 176 (304)
T ss_dssp EECCCTTCEEHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTSCEEEESSEEEEC-
T ss_pred EEEcCCCCCHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHeEEcCCCCEEecccccceec
Confidence 99999999999999875 4689999999999999999999999 9999999999999999999999999999865
Q ss_pred cCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhccccccc
Q 035998 896 LSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVL 975 (1020)
Q Consensus 896 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 975 (1020)
.+.. ......+||+.|||||++.+..|+.++||||+||++|||+||+.||..... .+. ...+..... ..
T Consensus 177 ~~~~--~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~---~~~---~~~i~~~~~--~~- 245 (304)
T 3ubd_A 177 IDHE--KKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDR---KET---MTMILKAKL--GM- 245 (304)
T ss_dssp ------CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH---HHH---HHHHHHCCC--CC-
T ss_pred cCCC--ccccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCcCH---HHH---HHHHHcCCC--CC-
Confidence 4322 233457899999999999999999999999999999999999999975322 111 112211110 00
Q ss_pred CccccCccCHHHHHHHHHHHhhccCCCCCCCCCH-----HHHHH
Q 035998 976 DPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTT-----QQLVS 1014 (1020)
Q Consensus 976 d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~-----~evl~ 1014 (1020)
| .. ...++.+++.+||+.||++|||+ +|+++
T Consensus 246 -p---~~----~s~~~~~li~~~L~~dP~~R~ta~~~~~~eil~ 281 (304)
T 3ubd_A 246 -P---QF----LSPEAQSLLRMLFKRNPANRLGAGPDGVEEIKR 281 (304)
T ss_dssp -C---TT----SCHHHHHHHHHHTCSSGGGSTTCSTTTHHHHHT
T ss_pred -C---Cc----CCHHHHHHHHHHcccCHHHCCCCCcCCHHHHHc
Confidence 1 11 12357899999999999999984 67765
No 36
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=100.00 E-value=2.2e-45 Score=400.59 Aligned_cols=251 Identities=26% Similarity=0.403 Sum_probs=189.1
Q ss_pred cCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc-hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCc-------
Q 035998 742 NNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC-GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKND------- 812 (1020)
Q Consensus 742 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~------- 812 (1020)
++|++.+.||+|+||+||+|+.+ +|+.||||++.... ....+.+.+|++++++++|||||++++++.+.+.
T Consensus 5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~ 84 (299)
T 4g31_A 5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPS 84 (299)
T ss_dssp HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC--------
T ss_pred hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCcccccccc
Confidence 35899999999999999999865 78999999987543 3344678999999999999999999999976543
Q ss_pred -----eEEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEe
Q 035998 813 -----RLLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLA 887 (1020)
Q Consensus 813 -----~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~ 887 (1020)
.|+||||+++|+|.+++..... ....++..++.++.||++||+|||++ +||||||||+|||++.++.+||+
T Consensus 85 ~~~~~l~ivmE~~~gg~L~~~l~~~~~-~~~~~~~~~~~i~~qi~~al~ylH~~---~IiHRDlKp~NILl~~~~~vKl~ 160 (299)
T 4g31_A 85 SPKVYLYIQMQLCRKENLKDWMNGRCT-IEERERSVCLHIFLQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVVKVG 160 (299)
T ss_dssp --CEEEEEEEECCCSCCHHHHHHTCCS-GGGSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEEC
T ss_pred CCCcEEEEEEecCCCCcHHHHHHhcCC-CChhHHHHHHHHHHHHHHHHHHHHHC---cCccccCcHHHeEECCCCcEEEc
Confidence 6899999999999999986422 23456777899999999999999999 99999999999999999999999
Q ss_pred eccccccccCCCCc----------ccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCccc
Q 035998 888 DFGLARLILSPYDT----------HVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRD 957 (1020)
Q Consensus 888 Dfg~~~~~~~~~~~----------~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~ 957 (1020)
|||+|+........ ......+||+.|||||++.+..|+.++||||+||++|||++ ||.. ..+
T Consensus 161 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~-----~~~ 232 (299)
T 4g31_A 161 DFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFST-----QME 232 (299)
T ss_dssp CCCCC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSS-----HHH
T ss_pred cCccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCC-----ccH
Confidence 99999876532211 11234579999999999999999999999999999999996 7742 111
Q ss_pred HHHHHHHHHhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 958 LISWVIRMRQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 958 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
........... .. |. ..........+++.+||+.||++|||+.|+++
T Consensus 233 ~~~~~~~~~~~-~~-----p~----~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~ 279 (299)
T 4g31_A 233 RVRTLTDVRNL-KF-----PP----LFTQKYPCEYVMVQDMLSPSPMERPEAINIIE 279 (299)
T ss_dssp HHHHHHHHHTT-CC-----CH----HHHHHCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHHHHhcC-CC-----CC----CCcccCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 11111111111 11 10 11122234678999999999999999999987
No 37
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.1e-45 Score=442.50 Aligned_cols=453 Identities=20% Similarity=0.228 Sum_probs=342.9
Q ss_pred EEEecCCCcccccccccccCCCCCcEEecCCCCCCCCCCccccCCCCCCeeeccCCCCCCCCCCcc-CCCCcceeeeccC
Q 035998 88 TGLFLYKRRLKGKLSESLGNLVQLRFLNLSHNLLKGTVPVSLVNLPNLEVLDLSSNDLSGPLPQTI-NLPSIQVLDISSN 166 (1020)
Q Consensus 88 ~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-~l~~L~~L~Ls~N 166 (1020)
+.++++++++++ +|..+. ++|++|+|++|.+++..|.+|+++++|++|+|++|+|++..|..+ ++++|++|+|++|
T Consensus 34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 556777777775 666554 788888888888887777788888888888888888888777777 7888888888888
Q ss_pred ccCCCCCccccccCCcccEEEccCCCCCC-CCCCccccccccccccccccccccccchhhhhhccc--cccccccccc--
Q 035998 167 SLNGSVPTSICKNSSRIRVINLSVNYFSG-TLSPGLGNCASLEHLCLGMNDLTGGIADDIFQLQKL--RLLGLQDNQL-- 241 (1020)
Q Consensus 167 ~l~~~ip~~~~~~~~~L~~L~L~~N~l~~-~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L--~~L~L~~N~l-- 241 (1020)
+++ .+|.. .+++|++|+|++|++++ .+|..|+++++|++|+|++|++++ ..+..+++| ++|++++|++
T Consensus 111 ~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~n~l~~ 183 (562)
T 3a79_B 111 RLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSYHI 183 (562)
T ss_dssp CCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEEESSCCC
T ss_pred cCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEEeecccccc
Confidence 887 67766 57888888888888876 345788888888888888888875 345555555 8888888888
Q ss_pred CCCCCcccccCC-CccEEEccCCcCcccCcc-cccCCcccceeeccccc-----ccccCCCCCcCCcccccccccccccc
Q 035998 242 SGKLSPSIADLS-NLVRLDVSSNNFSGNIPD-VFAGLGEFQYLVAHSNR-----FTGRIPHSLSNSPTLNLLNLRNNSLD 314 (1020)
Q Consensus 242 ~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~L~~N~-----l~~~~p~~~~~l~~L~~L~L~~N~l~ 314 (1020)
++..|..+..+. ..-.+++++|.+.+.+++ .+..+++|+.|++++|+ +.+.+ ..+..+++|+.|+++++.+.
T Consensus 184 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~-~~l~~l~~L~~L~L~~~~l~ 262 (562)
T 3a79_B 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL-SELTRGPTLLNVTLQHIETT 262 (562)
T ss_dssp CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHH-HHHHSCSSCEEEEEEEEEEC
T ss_pred cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHH-HHHhccCcceEEEecCCcCc
Confidence 777787877765 222567888888775554 45677888888888874 22222 24566777777777777665
Q ss_pred cccccC---CCCCCCcCEEEcCCCccCCCCCCCC-----CCCCCCCeEecCCCcccccCc-ccccC---CCCCCeeeCCC
Q 035998 315 GSLLLN---CPALTNLTSLDLGTNKFNGPLPTNL-----PRCRKLKNINLARNNFSGQIP-ETYKN---FESLSYLSLSN 382 (1020)
Q Consensus 315 ~~~~~~---~~~l~~L~~L~L~~N~l~~~~p~~l-----~~l~~L~~L~L~~N~l~~~~p-~~~~~---l~~L~~L~l~~ 382 (1020)
+..... ....++|++|++++|+++|.+|..+ ..++.|+.++++.|.+ .+| ..+.. ..+|++|++++
T Consensus 263 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~ 340 (562)
T 3a79_B 263 WKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISD 340 (562)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEES
T ss_pred HHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccC
Confidence 321110 1123478888888888887777776 5666666666666665 333 22222 24577777777
Q ss_pred CCCcchhhHHHHHhhhcccchhhhhccccCCCCCCCccccccCceEEEecccccccccchhhhcCCCCcEEecccccccc
Q 035998 383 SSIYNLSSALQVLQQCRNLTTLVLTLNFRNEKLPTDPRLHFANLKVLVIASCGLRGSIPQWLRGCSKLQLVDLSWNQLSG 462 (1020)
Q Consensus 383 N~i~~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 462 (1020)
|.+..++ ....+++|+.|++++|.+.+.+|..++++++|+.|+|++|++++
T Consensus 341 n~~~~~~-----------------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 391 (562)
T 3a79_B 341 TPFIHMV-----------------------------CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN 391 (562)
T ss_dssp SCCCCCC-----------------------------CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCB
T ss_pred CCccccc-----------------------------CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCC
Confidence 6653321 11356789999999999999999999999999999999999996
Q ss_pred --cccccccCcCcCcEEeCCCCcccccCCC-CCCCCcccccccCcCCCCCCCcccceeecccccccccccccCCCCeeec
Q 035998 463 --TIPVWFGGFQDLFYLDLSNNTFTGEIPK-NLTGLPSLITRNISLEEPSPDFPFFMRRNVSARGLQYNQIWSFPPTIDL 539 (1020)
Q Consensus 463 --~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~l~~s~~~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~l~L 539 (1020)
.+|..|+++++|++|+|++|++++.+|. .+..+++| +.|+|
T Consensus 392 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L------------------------------------~~L~l 435 (562)
T 3a79_B 392 FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI------------------------------------LVLNL 435 (562)
T ss_dssp TTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC------------------------------------CEEEC
T ss_pred cccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC------------------------------------CEEEC
Confidence 4467899999999999999999985665 47777766 46788
Q ss_pred ccCccccCCCccccCCCcceEEEecCCcceeccCccccCCCcccEEEccCCcccccCCcc-ccccccccccccccccccc
Q 035998 540 SLNRLDGSIWPEFGNLKKLHVFDLKHNNLSGPIPSELTGMTSLETLDLSYNNLSGAIPIS-LEKLSFLSKFSVANNHLTG 618 (1020)
Q Consensus 540 s~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~-l~~l~~L~~l~ls~N~l~g 618 (1020)
++|++++.+|..+. ++|+.|+|++|+|+ .+|..+..+++|++|||++|+|+ .+|.. +..+++|+.|++++|++++
T Consensus 436 ~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 436 SSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp CSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred CCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCC
Confidence 89999887776665 78999999999998 79998889999999999999999 67776 9999999999999999998
Q ss_pred cCCC
Q 035998 619 RIPS 622 (1020)
Q Consensus 619 ~~p~ 622 (1020)
..|.
T Consensus 512 ~c~~ 515 (562)
T 3a79_B 512 TCPG 515 (562)
T ss_dssp CHHH
T ss_pred Ccch
Confidence 7663
No 38
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=100.00 E-value=6.9e-44 Score=397.67 Aligned_cols=286 Identities=40% Similarity=0.654 Sum_probs=248.4
Q ss_pred cccHHHHHHhccCCCcCCeeeccCCeEEEEEEeCCCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCccceEeeEEecc
Q 035998 731 EISIDDILESTNNFDQANIIGCGGFGLVYRATLPDGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNLVHLQGYCMHK 810 (1020)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~ 810 (1020)
.+++.++...+++|++.+.||+|+||.||+|++++++.||||++........+.+.+|++++++++||||+++++++.+.
T Consensus 28 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~ 107 (321)
T 2qkw_B 28 RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDER 107 (321)
T ss_dssp --CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCT
T ss_pred eecHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCC
Confidence 34445556678999999999999999999999888999999998876655667899999999999999999999999999
Q ss_pred CceEEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeecc
Q 035998 811 NDRLLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFG 890 (1020)
Q Consensus 811 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg 890 (1020)
+..++||||+++|+|.+++.........+++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||
T Consensus 108 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg 184 (321)
T 2qkw_B 108 NEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTR---AIIHRDVKSINILLDENFVPKITDFG 184 (321)
T ss_dssp TCCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCSTTEEECTTCCEEECCCT
T ss_pred CeEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCC---CeecCCCCHHHEEECCCCCEEEeecc
Confidence 999999999999999999976544445789999999999999999999999 99999999999999999999999999
Q ss_pred ccccccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcc
Q 035998 891 LARLILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENR 970 (1020)
Q Consensus 891 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~ 970 (1020)
+++...............||+.|+|||++.+..++.++||||+|+++|||++|+.||....+.+......|.........
T Consensus 185 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~ 264 (321)
T 2qkw_B 185 ISKKGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQ 264 (321)
T ss_dssp TCEECSSSSCCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHTTTC
T ss_pred cccccccccccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhcccccc
Confidence 99875433333334445689999999999888999999999999999999999999987777666677777666666666
Q ss_pred cccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 971 ESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 971 ~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
.....++.......+.....+.+++.+||+.||++|||++|+++.|+.+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~ 313 (321)
T 2qkw_B 265 LEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYA 313 (321)
T ss_dssp CCSSSSSSCTTCSCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHhcChhhccccCHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHH
Confidence 6666777666677788889999999999999999999999999999875
No 39
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.7e-43 Score=431.86 Aligned_cols=502 Identities=19% Similarity=0.221 Sum_probs=402.7
Q ss_pred ecCCCcccccccccccCCCCCcEEecCCCCCCCCCCccccCCCCCCeeeccCCCCCCCCCCcc-CCCCcceeeeccCccC
Q 035998 91 FLYKRRLKGKLSESLGNLVQLRFLNLSHNLLKGTVPVSLVNLPNLEVLDLSSNDLSGPLPQTI-NLPSIQVLDISSNSLN 169 (1020)
Q Consensus 91 ~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-~l~~L~~L~Ls~N~l~ 169 (1020)
+=++.+++ .+|..+. +++++|||++|+|++..|.+|.++++|++|||++|+|++++|.++ ++++|++|+|++|+|+
T Consensus 37 ~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~ 113 (635)
T 4g8a_A 37 QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 113 (635)
T ss_dssp ECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred ECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC
Confidence 33444555 4666553 579999999999997777889999999999999999999999888 8999999999999998
Q ss_pred CCCCccccccCCcccEEEccCCCCCCCCCCcccccccccccccccccccc-ccchhhhhhcccccccccccccCCCCCcc
Q 035998 170 GSVPTSICKNSSRIRVINLSVNYFSGTLSPGLGNCASLEHLCLGMNDLTG-GIADDIFQLQKLRLLGLQDNQLSGKLSPS 248 (1020)
Q Consensus 170 ~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 248 (1020)
.+|...|.++++|++|+|++|++++..+..|+++++|++|+|++|.+++ ..|..+..+++|++|+|++|++++..+..
T Consensus 114 -~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 192 (635)
T 4g8a_A 114 -SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 192 (635)
T ss_dssp -EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred -CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc
Confidence 7888888999999999999999998888889999999999999999976 46888999999999999999999888888
Q ss_pred cccCCCc----cEEEccCCcCcccCcccccCCcccceeeccccccccc-CCCCCcCCccccccccccccc------cccc
Q 035998 249 IADLSNL----VRLDVSSNNFSGNIPDVFAGLGEFQYLVAHSNRFTGR-IPHSLSNSPTLNLLNLRNNSL------DGSL 317 (1020)
Q Consensus 249 ~~~l~~L----~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~L~~N~l------~~~~ 317 (1020)
+..+.++ ..++++.|.++...+..+.. ..+..+++.+|..... .+..+..+..++...+..+.. ....
T Consensus 193 l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~-~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~ 271 (635)
T 4g8a_A 193 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 271 (635)
T ss_dssp GHHHHTCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCC
T ss_pred ccchhhhhhhhhhhhcccCcccccCcccccc-hhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccc
Confidence 8877654 47999999999776666654 4677888888866532 233455666666666544432 2223
Q ss_pred ccCCCCCCCcCEEEcCCCccC---CCCCCCCCCCCCCCeEecCCCcccccCcccccCCCCCCeeeCCCCCCcchhhHHHH
Q 035998 318 LLNCPALTNLTSLDLGTNKFN---GPLPTNLPRCRKLKNINLARNNFSGQIPETYKNFESLSYLSLSNSSIYNLSSALQV 394 (1020)
Q Consensus 318 ~~~~~~l~~L~~L~L~~N~l~---~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~i~~l~~~~~~ 394 (1020)
...+..+..+..+++..+... ...+..+..+.+++.+++.+|.+.... .+....+|+.|++++|.+..++.
T Consensus 272 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~---- 345 (635)
T 4g8a_A 272 KSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPT---- 345 (635)
T ss_dssp TTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCC----
T ss_pred ccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCc----
Confidence 334445556666666555433 234556677788999999998887543 35667789999999998877654
Q ss_pred HhhhcccchhhhhccccCCCCCCCccccccCceEEEecccccc--cccchhhhcCCCCcEEecccccccccccccccCcC
Q 035998 395 LQQCRNLTTLVLTLNFRNEKLPTDPRLHFANLKVLVIASCGLR--GSIPQWLRGCSKLQLVDLSWNQLSGTIPVWFGGFQ 472 (1020)
Q Consensus 395 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 472 (1020)
..+..|+.+.+..|....... ...+++|+.+++..|.+. +..+..+..+.+|+.|+++.|.+. .++..+..++
T Consensus 346 -~~l~~L~~l~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~ 420 (635)
T 4g8a_A 346 -LKLKSLKRLTFTSNKGGNAFS---EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLE 420 (635)
T ss_dssp -CBCTTCCEEEEESCCSCCBCC---CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCT
T ss_pred -ccchhhhhcccccccCCCCcc---cccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccc
Confidence 245677777777775544322 346789999999999885 456778889999999999999998 5677899999
Q ss_pred cCcEEeCCCCcccccCC-CCCCCCcccccccCcCCCCCCCcccceeecccccccccccccCCCCeeecccCccccCCCcc
Q 035998 473 DLFYLDLSNNTFTGEIP-KNLTGLPSLITRNISLEEPSPDFPFFMRRNVSARGLQYNQIWSFPPTIDLSLNRLDGSIWPE 551 (1020)
Q Consensus 473 ~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~l~~s~~~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~l~Ls~N~l~~~~~~~ 551 (1020)
+|+.+++++|+.....+ ..+.+++++ ..++++.|++.+..+..
T Consensus 421 ~L~~l~l~~~~~~~~~~~~~~~~l~~l------------------------------------~~l~ls~n~l~~~~~~~ 464 (635)
T 4g8a_A 421 QLEHLDFQHSNLKQMSEFSVFLSLRNL------------------------------------IYLDISHTHTRVAFNGI 464 (635)
T ss_dssp TCCEEECTTSEEESTTSSCTTTTCTTC------------------------------------CEEECTTSCCEECCTTT
T ss_pred cccchhhhhcccccccccccccccccc------------------------------------ccccccccccccccccc
Confidence 99999999998876654 345555544 36789999999999999
Q ss_pred ccCCCcceEEEecCCcc-eeccCccccCCCcccEEEccCCcccccCCccccccccccccccccccccccCCC-CCCCCCc
Q 035998 552 FGNLKKLHVFDLKHNNL-SGPIPSELTGMTSLETLDLSYNNLSGAIPISLEKLSFLSKFSVANNHLTGRIPS-GGQFQTF 629 (1020)
Q Consensus 552 ~~~L~~L~~L~Ls~N~l-~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~~p~-~~~~~~~ 629 (1020)
+..+++|+.|+|++|++ .+.+|..|..+++|++|||++|+|++.+|..|.++++|+.|+|++|+|++.+|. ...+.++
T Consensus 465 ~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L 544 (635)
T 4g8a_A 465 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 544 (635)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTC
T ss_pred cccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCC
Confidence 99999999999999985 446889999999999999999999999999999999999999999999998875 3456778
Q ss_pred CCccccCCCCCCCCC
Q 035998 630 PNSSFDGNNLCGEHR 644 (1020)
Q Consensus 630 ~~~~~~~n~l~~~~~ 644 (1020)
..+.+.+|.+.+..+
T Consensus 545 ~~L~Ls~N~l~~~~~ 559 (635)
T 4g8a_A 545 QVLDYSLNHIMTSKK 559 (635)
T ss_dssp CEEECTTSCCCBCCS
T ss_pred CEEECCCCcCCCCCH
Confidence 888999999887644
No 40
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.3e-44 Score=406.32 Aligned_cols=263 Identities=21% Similarity=0.326 Sum_probs=201.3
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc--hhhHHHHHHHHHHHHHcCCCccceEeeEEec------cC
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC--GQMEREFRAEVEALSRAQHPNLVHLQGYCMH------KN 811 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~------~~ 811 (1020)
.++|++.+.||+|+||.||+|+.. +|+.||||++.... ....+.+.+|++++++++|||||++++++.. .+
T Consensus 53 ~~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~ 132 (398)
T 4b99_A 53 GDEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFK 132 (398)
T ss_dssp CSSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCC
T ss_pred CCCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCC
Confidence 357999999999999999999864 79999999997543 2334678899999999999999999998764 35
Q ss_pred ceEEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccc
Q 035998 812 DRLLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGL 891 (1020)
Q Consensus 812 ~~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~ 891 (1020)
..|+|||||+ |+|.+++... ..+++.++..++.||+.||+|||++ +||||||||+|||++.++.+||+|||+
T Consensus 133 ~~~ivmE~~~-g~L~~~i~~~----~~l~~~~~~~~~~qil~al~ylH~~---~iiHRDlKP~NIl~~~~~~~Ki~DFGl 204 (398)
T 4b99_A 133 SVYVVLDLME-SDLHQIIHSS----QPLTLEHVRYFLYQLLRGLKYMHSA---QVIHRDLKPSNLLVNENCELKIGDFGM 204 (398)
T ss_dssp CEEEEEECCS-EEHHHHHTSS----SCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCEEECCCTT
T ss_pred EEEEEEeCCC-CCHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHC---cCcCCCcCccccccCCCCCEEEeecce
Confidence 7899999996 6788888653 5799999999999999999999999 999999999999999999999999999
Q ss_pred cccccCCC--CcccccccccccCccCccccCCC-CCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhh
Q 035998 892 ARLILSPY--DTHVTTDLVGTLGYIPPEYGQAS-VATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQE 968 (1020)
Q Consensus 892 ~~~~~~~~--~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~ 968 (1020)
|+.+.... ........+||+.|||||++.+. .++.++||||+||++|||++|++||.+... .+...........
T Consensus 205 a~~~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~---~~~l~~I~~~~g~ 281 (398)
T 4b99_A 205 ARGLCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNY---VHQLQLIMMVLGT 281 (398)
T ss_dssp CBCC-------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSH---HHHHHHHHHHHCC
T ss_pred eeecccCccccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCCH---HHHHHHHHHhcCC
Confidence 98764321 12234557899999999987764 679999999999999999999999975332 1222222111111
Q ss_pred cccccc--------------c---CccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 969 NRESEV--------------L---DPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 969 ~~~~~~--------------~---d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
...... . .+.......+.....+.+|+.+||+.||++|||++|+++
T Consensus 282 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~ 344 (398)
T 4b99_A 282 PSPAVIQAVGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALR 344 (398)
T ss_dssp CCGGGTC-----CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CChHHhhhhhhhhhhhhhhcCCCcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence 000000 0 000000000111235789999999999999999999986
No 41
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=100.00 E-value=2.2e-43 Score=395.52 Aligned_cols=202 Identities=27% Similarity=0.354 Sum_probs=171.7
Q ss_pred HHHHhccCCCcCCeeeccCCeEEEEEEeC----CCCEEEEEEecCCchhhHHHHHHHHHHHHHc-CCCccceEeeEEecc
Q 035998 736 DILESTNNFDQANIIGCGGFGLVYRATLP----DGRNVAIKRLSGDCGQMEREFRAEVEALSRA-QHPNLVHLQGYCMHK 810 (1020)
Q Consensus 736 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~----~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~ 810 (1020)
++....++|++.+.||+|+||+||+|+.+ +++.||||++..... ...+.+|+++++.+ +|||||++++++.+.
T Consensus 15 ~~p~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~--~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~ 92 (361)
T 4f9c_A 15 AVPQLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTSH--PIRIAAELQCLTVAGGQDNVMGVKYCFRKN 92 (361)
T ss_dssp HSGGGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTSC--HHHHHHHHHHHHHTCSBTTBCCCSEEEEET
T ss_pred hcCCccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEccccC--HHHHHHHHHHHHHhcCCCCCceEEEEEEEC
Confidence 33445678999999999999999999753 467899999876532 45678999999998 699999999999999
Q ss_pred CceEEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCC-CCeEEeec
Q 035998 811 NDRLLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGN-FGAHLADF 889 (1020)
Q Consensus 811 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~-~~~kl~Df 889 (1020)
+..|+||||+++|+|.+++. .+++.++..++.|++.||+|||++ +||||||||+|||++.+ +.+||+||
T Consensus 93 ~~~~lvmE~~~g~~L~~~~~-------~l~~~~~~~~~~qll~al~ylH~~---gIiHRDiKPeNiLl~~~~~~~kl~DF 162 (361)
T 4f9c_A 93 DHVVIAMPYLEHESFLDILN-------SLSFQEVREYMLNLFKALKRIHQF---GIVHRDVKPSNFLYNRRLKKYALVDF 162 (361)
T ss_dssp TEEEEEEECCCCCCHHHHHT-------TCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEECCC
T ss_pred CEEEEEEeCCCcccHHHHHc-------CCCHHHHHHHHHHHHHHHHHHHHC---CeEeCcCCHHHeEEeCCCCeEEECcC
Confidence 99999999999999999884 378999999999999999999999 99999999999999876 79999999
Q ss_pred cccccccCCCC--------------------------cccccccccccCccCccccCCC-CCCchhhHHHHHHHHHHHHc
Q 035998 890 GLARLILSPYD--------------------------THVTTDLVGTLGYIPPEYGQAS-VATYKGDVYSFGVVLLELLT 942 (1020)
Q Consensus 890 g~~~~~~~~~~--------------------------~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlGvil~ellt 942 (1020)
|+|+...+... .......+||+.|+|||++.+. .|+.++||||+||++|||++
T Consensus 163 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~ 242 (361)
T 4f9c_A 163 GLAQGTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLS 242 (361)
T ss_dssp TTCEECTTCSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHH
T ss_pred CCCcccCCccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHH
Confidence 99986543211 0112345799999999988765 58999999999999999999
Q ss_pred CCCCCCC
Q 035998 943 GKRPMDM 949 (1020)
Q Consensus 943 g~~pf~~ 949 (1020)
|+.||..
T Consensus 243 G~~Pf~~ 249 (361)
T 4f9c_A 243 GRYPFYK 249 (361)
T ss_dssp TCSSSSC
T ss_pred CCCCCCC
Confidence 9999964
No 42
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=8.6e-43 Score=419.80 Aligned_cols=453 Identities=20% Similarity=0.231 Sum_probs=340.4
Q ss_pred CceEEcCCCCCCCCCCCCCCCceEEEecCCCcccccccccccCCCCCcEEecCCCCCCCCCCccccCCCCCCeeeccCCC
Q 035998 65 WVGITCNSSSSLGLNDSIGSGRVTGLFLYKRRLKGKLSESLGNLVQLRFLNLSHNLLKGTVPVSLVNLPNLEVLDLSSND 144 (1020)
Q Consensus 65 w~gv~C~~~~~~~~~~~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 144 (1020)
.+-+.|+....+.+|.+.+ .+++.|+|++|.+++..+.+|+++++|++|+|++|++++..|..|+++++|++|+|++|+
T Consensus 33 ~~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 111 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDLP-PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111 (562)
T ss_dssp CCEEECTTSCCCSCCTTSC-TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred CcEEEcCCCCCccCCCCCC-CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc
Confidence 4679999999999998776 799999999999999888999999999999999999998889999999999999999999
Q ss_pred CCCCCCCccCCCCcceeeeccCccCCCCC-ccccccCCcccEEEccCCCCCCCCCCcccccccc--cccccccccc--cc
Q 035998 145 LSGPLPQTINLPSIQVLDISSNSLNGSVP-TSICKNSSRIRVINLSVNYFSGTLSPGLGNCASL--EHLCLGMNDL--TG 219 (1020)
Q Consensus 145 l~~~~p~~~~l~~L~~L~Ls~N~l~~~ip-~~~~~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L--~~L~L~~N~l--~~ 219 (1020)
|+.. |.. .+++|++|+|++|++++ +| ...+..+++|++|+|++|++++. .+..+++| ++|+|++|.+ ++
T Consensus 112 l~~l-p~~-~l~~L~~L~Ls~N~l~~-l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~ 185 (562)
T 3a79_B 112 LQNI-SCC-PMASLRHLDLSFNDFDV-LPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKG 185 (562)
T ss_dssp CCEE-CSC-CCTTCSEEECCSSCCSB-CCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCS
T ss_pred CCcc-Ccc-ccccCCEEECCCCCccc-cCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccc
Confidence 9954 444 89999999999999984 43 24557899999999999999863 45555666 9999999999 88
Q ss_pred ccchhhhhhc-ccccccccccccCCCCCc-ccccCCCccEEEccCCc-----CcccCcccccCCcccceeeccccccccc
Q 035998 220 GIADDIFQLQ-KLRLLGLQDNQLSGKLSP-SIADLSNLVRLDVSSNN-----FSGNIPDVFAGLGEFQYLVAHSNRFTGR 292 (1020)
Q Consensus 220 ~~~~~~~~l~-~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~-----l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 292 (1020)
..|..+..+. ....+++++|.+.+.++. .+..+++|+.|++++|+ +.+. ...|.++++|+.|++.++.+++.
T Consensus 186 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~-~~~l~~l~~L~~L~L~~~~l~~~ 264 (562)
T 3a79_B 186 GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF-LSELTRGPTLLNVTLQHIETTWK 264 (562)
T ss_dssp SSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH-HHHHHSCSSCEEEEEEEEEECHH
T ss_pred cCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHH-HHHHhccCcceEEEecCCcCcHH
Confidence 8888887764 222568888988876654 56678889999999885 2222 23456667777777666655432
Q ss_pred C----CCCCcCCcccccccccccccccccccCC-----CCCCCcCEEEcCCCccCCCCC-CCCCC---CCCCCeEecCCC
Q 035998 293 I----PHSLSNSPTLNLLNLRNNSLDGSLLLNC-----PALTNLTSLDLGTNKFNGPLP-TNLPR---CRKLKNINLARN 359 (1020)
Q Consensus 293 ~----p~~~~~l~~L~~L~L~~N~l~~~~~~~~-----~~l~~L~~L~L~~N~l~~~~p-~~l~~---l~~L~~L~L~~N 359 (1020)
. +..+ ..++|++|++++|.+++.+|..+ ..++.|+.++++.|.+ .+| ..+.. ..+|+.|++++|
T Consensus 265 ~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n 341 (562)
T 3a79_B 265 CSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDT 341 (562)
T ss_dssp HHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESS
T ss_pred HHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCC
Confidence 1 1111 12367777777777776666655 5556666666666655 233 11111 145677777777
Q ss_pred cccccCcccccCCCCCCeeeCCCCCCcchhhHHHHHhhhcccchhhhhccccCCCCCCCccccccCceEEEeccccccc-
Q 035998 360 NFSGQIPETYKNFESLSYLSLSNSSIYNLSSALQVLQQCRNLTTLVLTLNFRNEKLPTDPRLHFANLKVLVIASCGLRG- 438 (1020)
Q Consensus 360 ~l~~~~p~~~~~l~~L~~L~l~~N~i~~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~- 438 (1020)
.+.... ....+++|++|++++|+++.... ..+..+++|+.|++++|.+.+
T Consensus 342 ~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~---------------------------~~~~~l~~L~~L~L~~N~l~~~ 392 (562)
T 3a79_B 342 PFIHMV--CPPSPSSFTFLNFTQNVFTDSVF---------------------------QGCSTLKRLQTLILQRNGLKNF 392 (562)
T ss_dssp CCCCCC--CCSSCCCCCEEECCSSCCCTTTT---------------------------TTCCSCSSCCEEECCSSCCCBT
T ss_pred Cccccc--CccCCCCceEEECCCCccccchh---------------------------hhhcccCCCCEEECCCCCcCCc
Confidence 664321 12556677777777776654211 112234556666666666665
Q ss_pred -ccchhhhcCCCCcEEecccccccccccc-cccCcCcCcEEeCCCCcccccCCCCCCCCcccccccCcCCCCCCCcccce
Q 035998 439 -SIPQWLRGCSKLQLVDLSWNQLSGTIPV-WFGGFQDLFYLDLSNNTFTGEIPKNLTGLPSLITRNISLEEPSPDFPFFM 516 (1020)
Q Consensus 439 -~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~s~~~~~~~~~~~~ 516 (1020)
.+|..+.++++|+.|++++|++++.+|. .|..+++|++|+|++|++++.+|..+. ++|
T Consensus 393 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L------------------ 452 (562)
T 3a79_B 393 FKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKV------------------ 452 (562)
T ss_dssp THHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTC------------------
T ss_pred ccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcC------------------
Confidence 3456788999999999999999985554 588999999999999999988777653 333
Q ss_pred eecccccccccccccCCCCeeecccCccccCCCccccCCCcceEEEecCCcceeccCcc-ccCCCcccEEEccCCccccc
Q 035998 517 RRNVSARGLQYNQIWSFPPTIDLSLNRLDGSIWPEFGNLKKLHVFDLKHNNLSGPIPSE-LTGMTSLETLDLSYNNLSGA 595 (1020)
Q Consensus 517 ~~~~~~~~l~~n~~~~~~~~l~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~g~ 595 (1020)
+.|+|++|+|+ .+|+.+..+++|++|+|++|+|+ .+|.. +..+++|+.|+|++|++++.
T Consensus 453 ------------------~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 453 ------------------KVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp ------------------SEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred ------------------CEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 36788899888 57777779999999999999999 57776 99999999999999999987
Q ss_pred CC
Q 035998 596 IP 597 (1020)
Q Consensus 596 ip 597 (1020)
.|
T Consensus 513 c~ 514 (562)
T 3a79_B 513 CP 514 (562)
T ss_dssp HH
T ss_pred cc
Confidence 65
No 43
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.6e-42 Score=404.97 Aligned_cols=387 Identities=18% Similarity=0.225 Sum_probs=300.7
Q ss_pred CCCcCce--EEcCCCCCCCCCCCCCCCceEEEecCCCcccccccccccCCCCCcEEecCCCCCCCCC-CccccCCCCCCe
Q 035998 61 DCCHWVG--ITCNSSSSLGLNDSIGSGRVTGLFLYKRRLKGKLSESLGNLVQLRFLNLSHNLLKGTV-PVSLVNLPNLEV 137 (1020)
Q Consensus 61 ~~C~w~g--v~C~~~~~~~~~~~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~ 137 (1020)
+.|.|.+ |.|+..+.+.+|. .+ .+++.|+|++|.+++..|..++++++|++|+|++|.+.+.+ |..|.++++|++
T Consensus 6 ~~c~~~~~~~~c~~~~l~~lp~-l~-~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~ 83 (455)
T 3v47_A 6 SECSVIGYNAICINRGLHQVPE-LP-AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLII 83 (455)
T ss_dssp -CCEEETTEEECCSSCCSSCCC-CC-TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCE
T ss_pred ceeEEEccccCcCCCCcccCCC-CC-CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCE
Confidence 4455544 9999999999988 33 68999999999999988999999999999999999998766 567999999999
Q ss_pred eeccCCCCCCCCCCcc-CCCCcceeeeccCccCCCCCc-cccccCCcccEEEccCCCCCCCCCCc-cccccccccccccc
Q 035998 138 LDLSSNDLSGPLPQTI-NLPSIQVLDISSNSLNGSVPT-SICKNSSRIRVINLSVNYFSGTLSPG-LGNCASLEHLCLGM 214 (1020)
Q Consensus 138 L~L~~n~l~~~~p~~~-~l~~L~~L~Ls~N~l~~~ip~-~~~~~~~~L~~L~L~~N~l~~~~~~~-l~~l~~L~~L~L~~ 214 (1020)
|+|++|++++.+|..+ ++++|++|+|++|++++.+|. ..+..+++|++|+|++|++++..|.. ++++++|++|+|++
T Consensus 84 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~ 163 (455)
T 3v47_A 84 LKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTF 163 (455)
T ss_dssp EECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTT
T ss_pred EeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCC
Confidence 9999999999988888 899999999999999875544 44678899999999999999887876 88999999999999
Q ss_pred cccccccchhhhhh--cccccccccccccCCCCCcc--------cccCCCccEEEccCCcCcccCcccccCC---cccce
Q 035998 215 NDLTGGIADDIFQL--QKLRLLGLQDNQLSGKLSPS--------IADLSNLVRLDVSSNNFSGNIPDVFAGL---GEFQY 281 (1020)
Q Consensus 215 N~l~~~~~~~~~~l--~~L~~L~L~~N~l~~~~~~~--------~~~l~~L~~L~Ls~N~l~~~~p~~~~~l---~~L~~ 281 (1020)
|++++..+..+..+ .+|+.|++++|.+++..+.. +..+++|++|++++|++++..|..+... ++|+.
T Consensus 164 n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~ 243 (455)
T 3v47_A 164 NKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQS 243 (455)
T ss_dssp CCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEE
T ss_pred CcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceee
Confidence 99999889888887 78999999999998655443 3356889999999999998888877665 78899
Q ss_pred eecccccccccCCCCCcCCcccccccccccccccccccCCCC--CCCcCEEEcCCCccCCCCCCCCCCCCCCCeEecCCC
Q 035998 282 LVAHSNRFTGRIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPA--LTNLTSLDLGTNKFNGPLPTNLPRCRKLKNINLARN 359 (1020)
Q Consensus 282 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~--l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 359 (1020)
|++++|.+.+.... .+.+.+..+..+.. .++|++|++++|++++.+|..+..+++|++|+|++|
T Consensus 244 L~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 309 (455)
T 3v47_A 244 LILSNSYNMGSSFG--------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN 309 (455)
T ss_dssp EECTTCTTTSCCTT--------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred Eeeccccccccccc--------------hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCC
Confidence 99998876543211 11111111111211 246666666666666666666666666666666666
Q ss_pred cccccCcccccCCCCCCeeeCCCCCCcchhhHHHHHhhhcccchhhhhccccCCCCCCCccccccCceEEEecccccccc
Q 035998 360 NFSGQIPETYKNFESLSYLSLSNSSIYNLSSALQVLQQCRNLTTLVLTLNFRNEKLPTDPRLHFANLKVLVIASCGLRGS 439 (1020)
Q Consensus 360 ~l~~~~p~~~~~l~~L~~L~l~~N~i~~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 439 (1020)
++++..|..|..+++|++|++++|.++.++.. .+..+++|+.|++++|.+.+.
T Consensus 310 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---------------------------~~~~l~~L~~L~Ls~N~l~~~ 362 (455)
T 3v47_A 310 EINKIDDNAFWGLTHLLKLNLSQNFLGSIDSR---------------------------MFENLDKLEVLDLSYNHIRAL 362 (455)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECGG---------------------------GGTTCTTCCEEECCSSCCCEE
T ss_pred cccccChhHhcCcccCCEEECCCCccCCcChh---------------------------HhcCcccCCEEECCCCccccc
Confidence 66666666666666666666666666554321 112334555666666667777
Q ss_pred cchhhhcCCCCcEEecccccccccccccccCcCcCcEEeCCCCcccccCCC
Q 035998 440 IPQWLRGCSKLQLVDLSWNQLSGTIPVWFGGFQDLFYLDLSNNTFTGEIPK 490 (1020)
Q Consensus 440 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 490 (1020)
.|..+.++++|++|+|++|+|++..+..|..+++|++|+|++|++++..|.
T Consensus 363 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 363 GDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 788899999999999999999977777889999999999999999987763
No 44
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=9.4e-43 Score=408.70 Aligned_cols=383 Identities=22% Similarity=0.242 Sum_probs=263.0
Q ss_pred eeeeccCccCCCCCccccccCCcccEEEccCCCCCCCCCCcccccccccccccccccccccc-chhhhhhcccccccccc
Q 035998 160 VLDISSNSLNGSVPTSICKNSSRIRVINLSVNYFSGTLSPGLGNCASLEHLCLGMNDLTGGI-ADDIFQLQKLRLLGLQD 238 (1020)
Q Consensus 160 ~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~ 238 (1020)
.++.+++.++ .+|. + .++|++|+|++|.+++..|..|+++++|++|+|++|.+.+.+ +..|.++++|++|+|++
T Consensus 14 ~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 14 NAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp EEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred ccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 3444444444 4444 2 245566666666666555666666666666666666665333 44566666666666666
Q ss_pred cccCCCCCcccccCCCccEEEccCCcCcccCccc--ccCCcccceeecccccccccCCCC-CcCCccccccccccccccc
Q 035998 239 NQLSGKLSPSIADLSNLVRLDVSSNNFSGNIPDV--FAGLGEFQYLVAHSNRFTGRIPHS-LSNSPTLNLLNLRNNSLDG 315 (1020)
Q Consensus 239 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~--~~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~ 315 (1020)
|++++..|..|.++++|++|+|++|++++..|.. |..+++|++|++++|++++..|.. +.++++|++|++++|.+++
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 6666555666666666666666666666543333 666666666666666666655554 5666666666666666666
Q ss_pred ccccCCCCC--CCcCEEEcCCCccCCCCCCCC--------CCCCCCCeEecCCCcccccCcccccCC---CCCCeeeCCC
Q 035998 316 SLLLNCPAL--TNLTSLDLGTNKFNGPLPTNL--------PRCRKLKNINLARNNFSGQIPETYKNF---ESLSYLSLSN 382 (1020)
Q Consensus 316 ~~~~~~~~l--~~L~~L~L~~N~l~~~~p~~l--------~~l~~L~~L~L~~N~l~~~~p~~~~~l---~~L~~L~l~~ 382 (1020)
..+..+..+ .+|+.|++++|.+.+..+..+ ..+++|++|++++|++++..|..+... .+|+.|++++
T Consensus 169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 248 (455)
T 3v47_A 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248 (455)
T ss_dssp CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence 555555444 567777777777765444332 245667777777777776666655443 6666777766
Q ss_pred CCCcchhhHHHHHhhhcccchhhhhccccCCCCCCCccccccCceEEEecccccccccchhhhcC--CCCcEEecccccc
Q 035998 383 SSIYNLSSALQVLQQCRNLTTLVLTLNFRNEKLPTDPRLHFANLKVLVIASCGLRGSIPQWLRGC--SKLQLVDLSWNQL 460 (1020)
Q Consensus 383 N~i~~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l--~~L~~L~Ls~N~l 460 (1020)
|.+..... ..+.+.+..+..+.++ ++|+.|++++|++
T Consensus 249 ~~~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 287 (455)
T 3v47_A 249 SYNMGSSF-----------------------------------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKI 287 (455)
T ss_dssp CTTTSCCT-----------------------------------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCC
T ss_pred cccccccc-----------------------------------------chhhhccCcccccccccccCceEEEecCccc
Confidence 65332110 0111222222233333 5788889999988
Q ss_pred cccccccccCcCcCcEEeCCCCcccccCCCCCCCCcccccccCcCCCCCCCcccceeecccccccccccccCCCCeeecc
Q 035998 461 SGTIPVWFGGFQDLFYLDLSNNTFTGEIPKNLTGLPSLITRNISLEEPSPDFPFFMRRNVSARGLQYNQIWSFPPTIDLS 540 (1020)
Q Consensus 461 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~s~~~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~l~Ls 540 (1020)
++.+|.+|+.+++|++|+|++|++++..|..++++++| +.|+|+
T Consensus 288 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L------------------------------------~~L~Ls 331 (455)
T 3v47_A 288 FALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL------------------------------------LKLNLS 331 (455)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC------------------------------------CEEECC
T ss_pred cccchhhcccCCCCCEEECCCCcccccChhHhcCcccC------------------------------------CEEECC
Confidence 88888888888889999999998888888888888777 357788
Q ss_pred cCccccCCCccccCCCcceEEEecCCcceeccCccccCCCcccEEEccCCcccccCCccccccccccccccccccccccC
Q 035998 541 LNRLDGSIWPEFGNLKKLHVFDLKHNNLSGPIPSELTGMTSLETLDLSYNNLSGAIPISLEKLSFLSKFSVANNHLTGRI 620 (1020)
Q Consensus 541 ~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~~ 620 (1020)
+|++++..|..|+.+++|++|+|++|++++..|..|..+++|++|+|++|+|++..+..+..+++|+.|++++|++++.+
T Consensus 332 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 332 QNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp SSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred CCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCC
Confidence 88888888888999999999999999999888999999999999999999999776677899999999999999999999
Q ss_pred CCCC
Q 035998 621 PSGG 624 (1020)
Q Consensus 621 p~~~ 624 (1020)
|...
T Consensus 412 ~~~~ 415 (455)
T 3v47_A 412 PRID 415 (455)
T ss_dssp TTTH
T ss_pred Ccch
Confidence 8653
No 45
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.5e-42 Score=403.61 Aligned_cols=262 Identities=22% Similarity=0.255 Sum_probs=111.1
Q ss_pred CCceEEEecCCCcccccccccccCCCCCcEEecCCCCCCCCCCccccCCCCCCeeeccCCCCCCCCCCccCCCCcceeee
Q 035998 84 SGRVTGLFLYKRRLKGKLSESLGNLVQLRFLNLSHNLLKGTVPVSLVNLPNLEVLDLSSNDLSGPLPQTINLPSIQVLDI 163 (1020)
Q Consensus 84 ~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~l~~L~~L~L 163 (1020)
..++++++++++.+ |.+|++++++++|++|++++|.++|.+|.+++++++|+.+++++|.. .+|++|++
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~----------~~l~~L~l 78 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD----------RQAHELEL 78 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH----------HTCSEEEC
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc----------cCCCEEEe
Confidence 34566677777777 66777777777777777777777777777777666653333322211 12344444
Q ss_pred ccCccCCCCCccccccCCcccEEEccCCCCCCCCCCccccccccccccccccccccccchhhhhhcccccccccccccCC
Q 035998 164 SSNSLNGSVPTSICKNSSRIRVINLSVNYFSGTLSPGLGNCASLEHLCLGMNDLTGGIADDIFQLQKLRLLGLQDNQLSG 243 (1020)
Q Consensus 164 s~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 243 (1020)
++|.++ .+|.. .++|+.|++++|++++ +|.. +++|++|++++|++++ ++.. .++|++|++++|++++
T Consensus 79 ~~~~l~-~lp~~----~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~ 145 (454)
T 1jl5_A 79 NNLGLS-SLPEL----PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK 145 (454)
T ss_dssp TTSCCS-CCCSC----CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS
T ss_pred cCCccc-cCCCC----cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC
Confidence 444444 22321 2344444444444443 3322 2344444555554443 1110 1345555555555543
Q ss_pred CCCcccccCCCccEEEccCCcCcccCcccccCCcccceeecccccccccCCCCCcCCcccccccccccccccccccCCCC
Q 035998 244 KLSPSIADLSNLVRLDVSSNNFSGNIPDVFAGLGEFQYLVAHSNRFTGRIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPA 323 (1020)
Q Consensus 244 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 323 (1020)
+| .++++++|++|++++|++++ +|..+ .+|++|++++|++++ +| .++++++|+.|++++|++++. |..
T Consensus 146 -lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l-~~~--- 213 (454)
T 1jl5_A 146 -LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKL-PDL--- 213 (454)
T ss_dssp -CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSC-CCC---
T ss_pred -Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcC-CCC---
Confidence 33 35555555555555555543 23222 244555555555544 23 344555555555555555432 111
Q ss_pred CCCcCEEEcCCCccCCCCCCCCCCCCCCCeEecCCCcccccCcccccCCCCCCeeeCCCCCCcc
Q 035998 324 LTNLTSLDLGTNKFNGPLPTNLPRCRKLKNINLARNNFSGQIPETYKNFESLSYLSLSNSSIYN 387 (1020)
Q Consensus 324 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~i~~ 387 (1020)
.++|++|++++|+++ .+| .+..+++|++|++++|++++ +|.. +++|++|++++|+++.
T Consensus 214 ~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~ 271 (454)
T 1jl5_A 214 PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD 271 (454)
T ss_dssp CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC
T ss_pred cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc
Confidence 134555555555555 344 25555555555555555553 2221 2445555555555443
No 46
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=100.00 E-value=2e-42 Score=386.83 Aligned_cols=290 Identities=42% Similarity=0.757 Sum_probs=245.9
Q ss_pred CCccccHHHHHHhccCCCcCCeeeccCCeEEEEEEeCCCCEEEEEEecCCchh-hHHHHHHHHHHHHHcCCCccceEeeE
Q 035998 728 KEKEISIDDILESTNNFDQANIIGCGGFGLVYRATLPDGRNVAIKRLSGDCGQ-MEREFRAEVEALSRAQHPNLVHLQGY 806 (1020)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~l~~~ 806 (1020)
..+.++..++....++|++.+.||+|+||.||+|+.++++.||||++...... ....+.+|++++++++||||++++++
T Consensus 16 ~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~ 95 (326)
T 3uim_A 16 QLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGF 95 (326)
T ss_dssp CCEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCEE
T ss_pred ccceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEEE
Confidence 34668889999999999999999999999999999888999999998765322 22368899999999999999999999
Q ss_pred EeccCceEEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEE
Q 035998 807 CMHKNDRLLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHL 886 (1020)
Q Consensus 807 ~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl 886 (1020)
+.+.+..++||||+++|+|.+++.........+++..+..++.|++.||+|||+.+.++|+||||||+||+++.++.+||
T Consensus 96 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~kl 175 (326)
T 3uim_A 96 CMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVV 175 (326)
T ss_dssp ECCSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCEEE
T ss_pred EecCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCEEe
Confidence 99999999999999999999999887666677999999999999999999999987778999999999999999999999
Q ss_pred eeccccccccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCC--CCCcccHHHHHHH
Q 035998 887 ADFGLARLILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCK--PKGSRDLISWVIR 964 (1020)
Q Consensus 887 ~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~--~~~~~~~~~~~~~ 964 (1020)
+|||+++..... .........||+.|+|||++.+..++.++||||+|+++|||++|+.||.... .........+...
T Consensus 176 ~Dfg~~~~~~~~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~ 254 (326)
T 3uim_A 176 GDFGLAKLMDYK-DTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKG 254 (326)
T ss_dssp CCCSSCEECCSS-SSCEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHTT
T ss_pred ccCccccccCcc-cccccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHHHH
Confidence 999999876432 2233344569999999999988889999999999999999999999996321 2223344555555
Q ss_pred HHhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHh
Q 035998 965 MRQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDS 1018 (1020)
Q Consensus 965 ~~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~ 1018 (1020)
...........+..............+.+++.+||+.||.+|||++|+++.|++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~ 308 (326)
T 3uim_A 255 LLKEKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEG 308 (326)
T ss_dssp TTSSCCSTTSSCTTCTTSCCHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHT
T ss_pred HhhchhhhhhcChhhccccCHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcC
Confidence 445555566666666667788888999999999999999999999999999985
No 47
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=100.00 E-value=3.4e-42 Score=404.52 Aligned_cols=248 Identities=27% Similarity=0.326 Sum_probs=199.0
Q ss_pred cCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc---hhhHHHHHHH---HHHHHHcCCCccceEeeEEeccCceE
Q 035998 742 NNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC---GQMEREFRAE---VEALSRAQHPNLVHLQGYCMHKNDRL 814 (1020)
Q Consensus 742 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E---~~~l~~l~h~niv~l~~~~~~~~~~~ 814 (1020)
++|++.++||+|+||+||+|+.+ +|+.||||++.+.. ......+.+| +++++.++|||||+++++|.+.+..|
T Consensus 189 ddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~ly 268 (689)
T 3v5w_A 189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLS 268 (689)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEE
T ss_pred HHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEEE
Confidence 67999999999999999999865 68999999996532 1122233344 55566678999999999999999999
Q ss_pred EEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeecccccc
Q 035998 815 LIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARL 894 (1020)
Q Consensus 815 lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~ 894 (1020)
+||||++||+|.+++.+. ..+++..+..++.||+.||+|||++ +||||||||+|||++.+|++||+|||+|+.
T Consensus 269 lVmEy~~GGdL~~~l~~~----~~l~E~~a~~y~~qIl~aL~yLH~~---gIiHRDLKPeNILld~~G~vKL~DFGlA~~ 341 (689)
T 3v5w_A 269 FILDLMNGGDLHYHLSQH----GVFSEADMRFYAAEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRISDLGLACD 341 (689)
T ss_dssp EEECCCCSCBHHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred EEEecCCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCchHHeEEeCCCCEEecccceeee
Confidence 999999999999999875 4689999999999999999999999 999999999999999999999999999987
Q ss_pred ccCCCCcccccccccccCccCccccC-CCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhccccc
Q 035998 895 ILSPYDTHVTTDLVGTLGYIPPEYGQ-ASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESE 973 (1020)
Q Consensus 895 ~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 973 (1020)
.... .....+||+.|||||++. +..|+.++||||+||++|||++|+.||......... .......... . .
T Consensus 342 ~~~~----~~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~~---~i~~~i~~~~-~-~ 412 (689)
T 3v5w_A 342 FSKK----KPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKH---EIDRMTLTMA-V-E 412 (689)
T ss_dssp CSSC----CCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCHH---HHHHHHHHCC-C-C
T ss_pred cCCC----CCCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHH---HHHHhhcCCC-C-C
Confidence 6432 234568999999999986 468999999999999999999999999754333221 1111111111 0 0
Q ss_pred ccCccccCccCHHHHHHHHHHHhhccCCCCCCCCC-----HHHHHH
Q 035998 974 VLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPT-----TQQLVS 1014 (1020)
Q Consensus 974 ~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs-----~~evl~ 1014 (1020)
+... ...++.+++.+||+.||.+|++ ++||++
T Consensus 413 -----~p~~----~S~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~ 449 (689)
T 3v5w_A 413 -----LPDS----FSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKE 449 (689)
T ss_dssp -----CCTT----SCHHHHHHHHHHTCSCGGGCTTCSSSTHHHHTT
T ss_pred -----CCcc----CCHHHHHHHHHHccCCHhHCCCCCCCCHHHHhc
Confidence 0011 1235789999999999999998 688765
No 48
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5.4e-42 Score=398.85 Aligned_cols=391 Identities=24% Similarity=0.297 Sum_probs=180.2
Q ss_pred CCCCCCC-CCceEEEecCCCcccccccccccCCCCC-------------cEEecCCCCCCCCCCccccCCCCCCeeeccC
Q 035998 77 GLNDSIG-SGRVTGLFLYKRRLKGKLSESLGNLVQL-------------RFLNLSHNLLKGTVPVSLVNLPNLEVLDLSS 142 (1020)
Q Consensus 77 ~~~~~~~-~~~v~~l~l~~~~l~~~~~~~l~~l~~L-------------~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 142 (1020)
.+|...+ -.+++.|++++|.+.|.+|.+++++++| ++|++++|.+++ +|.. .++|++|++++
T Consensus 25 ~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~---~~~L~~L~l~~ 100 (454)
T 1jl5_A 25 EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL---PPHLESLVASC 100 (454)
T ss_dssp ---------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC---CTTCSEEECCS
T ss_pred hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC---cCCCCEEEccC
Confidence 3454332 2466778899999999999999999987 666666666663 3431 25666666666
Q ss_pred CCCCCCCCCccCCCCcceeeeccCccCCCCCccccccCCcccEEEccCCCCCCCCCCccccccccccccccccccccccc
Q 035998 143 NDLSGPLPQTINLPSIQVLDISSNSLNGSVPTSICKNSSRIRVINLSVNYFSGTLSPGLGNCASLEHLCLGMNDLTGGIA 222 (1020)
Q Consensus 143 n~l~~~~p~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 222 (1020)
|.+++ +|.. .++|++|++++|+++ .+|.. .++|++|++++|++++ +| .|+++++|++|++++|++++ +|
T Consensus 101 n~l~~-lp~~--~~~L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp 169 (454)
T 1jl5_A 101 NSLTE-LPEL--PQSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LP 169 (454)
T ss_dssp SCCSS-CCCC--CTTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CC
T ss_pred CcCCc-cccc--cCCCcEEECCCCccC-cccCC----CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cC
Confidence 66665 3332 256666666666665 23321 1456666666666654 44 35566666666666666553 33
Q ss_pred hhhhhhcccccccccccccCCCCCcccccCCCccEEEccCCcCcccCcccccCCcccceeecccccccccCCCCCcCCcc
Q 035998 223 DDIFQLQKLRLLGLQDNQLSGKLSPSIADLSNLVRLDVSSNNFSGNIPDVFAGLGEFQYLVAHSNRFTGRIPHSLSNSPT 302 (1020)
Q Consensus 223 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 302 (1020)
..+ .+|++|++++|++++ +| .+.++++|++|++++|++++ +|... ++|++|++++|+++ .+| .++.+++
T Consensus 170 ~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp-~~~~l~~ 238 (454)
T 1jl5_A 170 DLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILE-ELP-ELQNLPF 238 (454)
T ss_dssp CCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCS-SCC-CCTTCTT
T ss_pred CCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCC-ccc-ccCCCCC
Confidence 322 355555555555554 33 35555555555555555553 22221 24455555555554 233 2444444
Q ss_pred cccccccccccccccccCCCCCCCcCEEEcCCCccCCCCCCCCCCCCCCCeEecCCCcccccCcccccCCCCCCeeeCCC
Q 035998 303 LNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNKFNGPLPTNLPRCRKLKNINLARNNFSGQIPETYKNFESLSYLSLSN 382 (1020)
Q Consensus 303 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~ 382 (1020)
|++|++++|++++ +|.. +++|+.|++++|++++ +|.. .++|++|++++
T Consensus 239 L~~L~l~~N~l~~-------------------------l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~ 286 (454)
T 1jl5_A 239 LTTIYADNNLLKT-------------------------LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSE 286 (454)
T ss_dssp CCEEECCSSCCSS-------------------------CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCS
T ss_pred CCEEECCCCcCCc-------------------------cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcC
Confidence 5555555444443 2221 1344555555555443 2322 24445555555
Q ss_pred CCCcchhhHHHHHhhhcccchhhhhccccCCCCCCCccccccCceEEEecccccccccchhhhcC-CCCcEEeccccccc
Q 035998 383 SSIYNLSSALQVLQQCRNLTTLVLTLNFRNEKLPTDPRLHFANLKVLVIASCGLRGSIPQWLRGC-SKLQLVDLSWNQLS 461 (1020)
Q Consensus 383 N~i~~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l-~~L~~L~Ls~N~l~ 461 (1020)
|+++.++.. .++|+.|++++|.+.+ ++ .+ ++|+.|++++|+++
T Consensus 287 N~l~~l~~~-------------------------------~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~ 330 (454)
T 1jl5_A 287 NIFSGLSEL-------------------------------PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLI 330 (454)
T ss_dssp SCCSEESCC-------------------------------CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCS
T ss_pred CccCcccCc-------------------------------CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCccc
Confidence 544432210 0233344444444432 11 12 36777777777777
Q ss_pred ccccccccCcCcCcEEeCCCCcccccCCCCCCCCcccccccCcCCCCCCCcccceeecccccccccccccCCCCeeeccc
Q 035998 462 GTIPVWFGGFQDLFYLDLSNNTFTGEIPKNLTGLPSLITRNISLEEPSPDFPFFMRRNVSARGLQYNQIWSFPPTIDLSL 541 (1020)
Q Consensus 462 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~s~~~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~l~Ls~ 541 (1020)
+ +|.. +++|++|+|++|+++ .+|. .+++| +.|++++
T Consensus 331 ~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L------------------------------------~~L~L~~ 366 (454)
T 1jl5_A 331 E-LPAL---PPRLERLIASFNHLA-EVPE---LPQNL------------------------------------KQLHVEY 366 (454)
T ss_dssp C-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTC------------------------------------CEEECCS
T ss_pred c-cccc---CCcCCEEECCCCccc-cccc---hhhhc------------------------------------cEEECCC
Confidence 4 5543 466777777777776 3444 12333 3466666
Q ss_pred Ccccc--CCCccccCCCcceEEEecCCcceeccCccccCCCcccEEEccCCcccc--cCCcccccccccccccccccccc
Q 035998 542 NRLDG--SIWPEFGNLKKLHVFDLKHNNLSGPIPSELTGMTSLETLDLSYNNLSG--AIPISLEKLSFLSKFSVANNHLT 617 (1020)
Q Consensus 542 N~l~~--~~~~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g--~ip~~l~~l~~L~~l~ls~N~l~ 617 (1020)
|++++ .+|..++. |+.|++.|.+|.. +++|++|||++|+++| .+|.+ |+.|.+.+|.+.
T Consensus 367 N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~ 429 (454)
T 1jl5_A 367 NPLREFPDIPESVED--------LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVV 429 (454)
T ss_dssp SCCSSCCCCCTTCCE--------EECCC----------------------------------------------------
T ss_pred CCCCcCCCChHHHHh--------hhhcccccccccc---cCcCCEEECCCCcCCccccchhh------HhheeCcCcccC
Confidence 77766 56665543 3356777777763 4789999999999997 77754 455678888888
Q ss_pred ccCCC
Q 035998 618 GRIPS 622 (1020)
Q Consensus 618 g~~p~ 622 (1020)
+.+|.
T Consensus 430 ~~~~~ 434 (454)
T 1jl5_A 430 DPYEF 434 (454)
T ss_dssp -----
T ss_pred Ccccc
Confidence 87764
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.3e-42 Score=384.95 Aligned_cols=295 Identities=28% Similarity=0.487 Sum_probs=205.8
Q ss_pred CCCHHHHHHHHHHHHHhccCC--CCCCCCCCCCCCCc--CceEEcCCCCCCCCCCCCCCCceEEEecCCCcccc--cccc
Q 035998 30 TCNPNDLAALEDFMKNFESGI--DGWGTNASSSDCCH--WVGITCNSSSSLGLNDSIGSGRVTGLFLYKRRLKG--KLSE 103 (1020)
Q Consensus 30 ~~~~~~~~aL~~~k~~~~~~~--~~~~~~~~~~~~C~--w~gv~C~~~~~~~~~~~~~~~~v~~l~l~~~~l~~--~~~~ 103 (1020)
.|.++|++||++||+++.++. .+| ..++|||. |.||+|+..+ ..++|+.|+|+++.++| .+|.
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~~l~~W---~~~~~~C~~~w~gv~C~~~~--------~~~~l~~L~L~~~~l~~~~~~~~ 70 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPTTLSSW---LPTTDCCNRTWLGVLCDTDT--------QTYRVNNLDLSGLNLPKPYPIPS 70 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCGGGTTC---CTTSCTTTTCSTTEEECCSS--------SCCCEEEEEEECCCCSSCEECCG
T ss_pred CCCHHHHHHHHHHHHhcCCcccccCC---CCCCCCCcCCCcceEeCCCC--------CCceEEEEECCCCCccCCcccCh
Confidence 599999999999999997542 344 34678998 9999998642 13689999999999999 8999
Q ss_pred cccCCCCCcEEecCC-CCCCCCCCccccCCCCCCeeeccCCCCCCCCCCcc-CCCCcceeeeccCccCCCCCccccccCC
Q 035998 104 SLGNLVQLRFLNLSH-NLLKGTVPVSLVNLPNLEVLDLSSNDLSGPLPQTI-NLPSIQVLDISSNSLNGSVPTSICKNSS 181 (1020)
Q Consensus 104 ~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-~l~~L~~L~Ls~N~l~~~ip~~~~~~~~ 181 (1020)
.++++++|++|+|++ |++++.+|..|+++++|++|+|++|++++.+|..+ ++++|++|+|++|++++.+|..+ ..++
T Consensus 71 ~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~ 149 (313)
T 1ogq_A 71 SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-SSLP 149 (313)
T ss_dssp GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG-GGCT
T ss_pred hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHH-hcCC
Confidence 999999999999995 99999999999999999999999999998888777 78888888888888776666554 3455
Q ss_pred cccEEEccCCCCCCCCCCcccccc-ccccccccccccccccchhhhhhcccccccccccccCCCCCcccccCCCccEEEc
Q 035998 182 RIRVINLSVNYFSGTLSPGLGNCA-SLEHLCLGMNDLTGGIADDIFQLQKLRLLGLQDNQLSGKLSPSIADLSNLVRLDV 260 (1020)
Q Consensus 182 ~L~~L~L~~N~l~~~~~~~l~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 260 (1020)
+|++|+|++|++++.+|..+++++ +|++|+|++|++++.+|..+..++ |++|++
T Consensus 150 ~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-------------------------L~~L~L 204 (313)
T 1ogq_A 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-------------------------LAFVDL 204 (313)
T ss_dssp TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-------------------------CSEEEC
T ss_pred CCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-------------------------ccEEEC
Confidence 566666666665555555555554 555555555555555555444443 555555
Q ss_pred cCCcCcccCcccccCCcccceeecccccccccCCCCCcCCcccccccccccccccccccCCCCCCCcCEEEcCCCccCCC
Q 035998 261 SSNNFSGNIPDVFAGLGEFQYLVAHSNRFTGRIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNKFNGP 340 (1020)
Q Consensus 261 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 340 (1020)
++|++++.+|..|..+++|+.|++++|++++.+|. +..+++|++|+|++|++++.+|..+..+++|++|+|++|+++|.
T Consensus 205 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 283 (313)
T 1ogq_A 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283 (313)
T ss_dssp CSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred cCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccccc
Confidence 55555444445555555555555555555444433 44555666666666666655666666666666666666666666
Q ss_pred CCCCCCCCCCCCeEecCCCc-ccc
Q 035998 341 LPTNLPRCRKLKNINLARNN-FSG 363 (1020)
Q Consensus 341 ~p~~l~~l~~L~~L~L~~N~-l~~ 363 (1020)
+|.. ..+++|+.|++++|+ +.|
T Consensus 284 ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 284 IPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp CCCS-TTGGGSCGGGTCSSSEEES
T ss_pred CCCC-ccccccChHHhcCCCCccC
Confidence 6664 666777777777776 443
No 50
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=100.00 E-value=1.7e-42 Score=412.13 Aligned_cols=251 Identities=24% Similarity=0.371 Sum_probs=208.5
Q ss_pred cCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEEEec
Q 035998 742 NNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIYSFM 820 (1020)
Q Consensus 742 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 820 (1020)
++|++.+.||+|+||.||+|+.+ +|+.||+|++........+.+.+|+++|+.++|||||+++++|.+....|+|||||
T Consensus 157 ~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E~~ 236 (573)
T 3uto_A 157 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFM 236 (573)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred cccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeec
Confidence 57999999999999999999865 69999999998766555677899999999999999999999999999999999999
Q ss_pred cCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCC--CCeEEeeccccccccCC
Q 035998 821 ENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGN--FGAHLADFGLARLILSP 898 (1020)
Q Consensus 821 ~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~--~~~kl~Dfg~~~~~~~~ 898 (1020)
+||+|.+++... ...+++.++..++.||+.||+|||++ +|+||||||+|||++.+ +.+||+|||+|+.+..
T Consensus 237 ~gg~L~~~i~~~---~~~l~e~~~~~~~~qi~~al~ylH~~---~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~- 309 (573)
T 3uto_A 237 SGGELFEKVADE---HNKMSEDEAVEYMRQVCKGLCHMHEN---NYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDP- 309 (573)
T ss_dssp CCCBHHHHHTCT---TSCEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCSSCEECCT-
T ss_pred CCCcHHHHHHHh---CCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCChhhccccCCCCCCEEEeeccceeEccC-
Confidence 999999988643 24689999999999999999999999 99999999999999854 8999999999998743
Q ss_pred CCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccccccCcc
Q 035998 899 YDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVLDPF 978 (1020)
Q Consensus 899 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 978 (1020)
.......+||+.|||||++.+..|+.++||||+||++|||++|+.||...... .....+..... .+.+.
T Consensus 310 --~~~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~~------~~~~~i~~~~~---~~~~~ 378 (573)
T 3uto_A 310 --KQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDD------ETLRNVKSCDW---NMDDS 378 (573)
T ss_dssp --TSEEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHH------HHHHHHHTTCC---CCCSG
T ss_pred --CCceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHH------HHHHHHHhCCC---CCCcc
Confidence 22334568999999999999999999999999999999999999999753321 11122211111 01111
Q ss_pred ccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 979 IYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 979 ~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
..... ...+.+|+.+||+.||.+|||++|+++
T Consensus 379 ~~~~~----s~~~~dli~~~L~~dp~~R~t~~e~l~ 410 (573)
T 3uto_A 379 AFSGI----SEDGKDFIRKLLLADPNTRMTIHQALE 410 (573)
T ss_dssp GGTTS----CHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred cccCC----CHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 11111 235789999999999999999999987
No 51
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=100.00 E-value=9.1e-41 Score=379.09 Aligned_cols=261 Identities=27% Similarity=0.406 Sum_probs=212.9
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC--------CCCEEEEEEecCCc-hhhHHHHHHHHHHHHHc-CCCccceEeeEEecc
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP--------DGRNVAIKRLSGDC-GQMEREFRAEVEALSRA-QHPNLVHLQGYCMHK 810 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~--------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~ 810 (1020)
.++|++.+.||+|+||.||+|++. ++..||||++.... ....+.+.+|+++++++ +||||+++++++.+.
T Consensus 80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~ 159 (370)
T 2psq_A 80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD 159 (370)
T ss_dssp GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSS
T ss_pred HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccC
Confidence 467899999999999999999852 34579999997654 33446789999999999 899999999999999
Q ss_pred CceEEEEEeccCCChhhhhhhcCC------------CCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEE
Q 035998 811 NDRLLIYSFMENGSLDYWLHEKLD------------GPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILL 878 (1020)
Q Consensus 811 ~~~~lv~e~~~~g~L~~~l~~~~~------------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll 878 (1020)
+..++||||+++|+|.+++..... ....+++.+++.++.||+.||+|||++ +|+||||||+||++
T Consensus 160 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll 236 (370)
T 2psq_A 160 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVLV 236 (370)
T ss_dssp SSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CeeccccchhhEEE
Confidence 999999999999999999986532 124589999999999999999999999 99999999999999
Q ss_pred cCCCCeEEeeccccccccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHc-CCCCCCCCCCCCccc
Q 035998 879 DGNFGAHLADFGLARLILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLT-GKRPMDMCKPKGSRD 957 (1020)
Q Consensus 879 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-g~~pf~~~~~~~~~~ 957 (1020)
+.++.+||+|||+++...............+|+.|+|||++.+..++.++|||||||++|||++ |+.||...... .
T Consensus 237 ~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~~~---~ 313 (370)
T 2psq_A 237 TENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVE---E 313 (370)
T ss_dssp CTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGG---G
T ss_pred CCCCCEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCHH---H
Confidence 9999999999999987654433333444567889999999999999999999999999999999 99999754322 2
Q ss_pred HHHHHHHHHhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhcC
Q 035998 958 LISWVIRMRQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSII 1020 (1020)
Q Consensus 958 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~il 1020 (1020)
.... ...... .. .+......+.+++.+||+.||++||+++|+++.|++++
T Consensus 314 ~~~~---~~~~~~-~~---------~~~~~~~~l~~li~~~l~~dP~~Rpt~~ell~~L~~il 363 (370)
T 2psq_A 314 LFKL---LKEGHR-MD---------KPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIL 363 (370)
T ss_dssp HHHH---HHTTCC-CC---------CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHHH---HhcCCC-CC---------CCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 2211 111111 00 11122246889999999999999999999999999863
No 52
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=100.00 E-value=6.2e-40 Score=363.79 Aligned_cols=259 Identities=26% Similarity=0.410 Sum_probs=211.7
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEEEe
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIYSF 819 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 819 (1020)
.++|++.+.||+|+||.||+|+.. +++.||+|++........+.+.+|++++++++||||+++++++.+.+..++||||
T Consensus 9 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~ 88 (310)
T 3s95_A 9 PSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEY 88 (310)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred hhHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEEe
Confidence 357889999999999999999875 6899999998776666678899999999999999999999999999999999999
Q ss_pred ccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccCCC
Q 035998 820 MENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILSPY 899 (1020)
Q Consensus 820 ~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~ 899 (1020)
+++++|.+++... ...+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++......
T Consensus 89 ~~~~~L~~~l~~~---~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 162 (310)
T 3s95_A 89 IKGGTLRGIIKSM---DSQYPWSQRVSFAKDIASGMAYLHSM---NIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEK 162 (310)
T ss_dssp CTTCBHHHHHHHC---CTTSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEECTTSCEEECCCTTCEECC---
T ss_pred cCCCcHHHHHHhc---cCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCcCeEEECCCCCEEEeecccceeccccc
Confidence 9999999999864 34689999999999999999999999 99999999999999999999999999998764322
Q ss_pred Ccc------------cccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHh
Q 035998 900 DTH------------VTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQ 967 (1020)
Q Consensus 900 ~~~------------~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~ 967 (1020)
... ......||+.|+|||++.+..++.++||||+|+++|||++|..||....................
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~ 242 (310)
T 3s95_A 163 TQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFLDR 242 (310)
T ss_dssp -----------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSSBCHHHHHHH
T ss_pred ccccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHhhhhhccccc
Confidence 111 11145789999999999999999999999999999999999999875443322111111111111
Q ss_pred hcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 968 ENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 968 ~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
. . . ......+.+++.+||+.||++|||+++++++|+++
T Consensus 243 ~-~-~------------~~~~~~l~~li~~~l~~dP~~Rps~~~l~~~L~~l 280 (310)
T 3s95_A 243 Y-C-P------------PNCPPSFFPITVRCCDLDPEKRPSFVKLEHWLETL 280 (310)
T ss_dssp T-C-C------------TTCCTTHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred c-C-C------------CCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 0 0 0 01112478999999999999999999999999875
No 53
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=100.00 E-value=2.2e-39 Score=358.93 Aligned_cols=281 Identities=36% Similarity=0.595 Sum_probs=229.6
Q ss_pred ccccHHHHHHhccCCCcC------CeeeccCCeEEEEEEeCCCCEEEEEEecCCc----hhhHHHHHHHHHHHHHcCCCc
Q 035998 730 KEISIDDILESTNNFDQA------NIIGCGGFGLVYRATLPDGRNVAIKRLSGDC----GQMEREFRAEVEALSRAQHPN 799 (1020)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~------~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h~n 799 (1020)
..++++++..++++|... +.||+|+||.||+|.. +++.||||++.... ....+.+.+|++++++++|||
T Consensus 13 ~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ 91 (307)
T 2nru_A 13 HSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHEN 91 (307)
T ss_dssp EECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTT
T ss_pred CcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCC
Confidence 567899999999998877 9999999999999987 58899999987532 234567899999999999999
Q ss_pred cceEeeEEeccCceEEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEc
Q 035998 800 LVHLQGYCMHKNDRLLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLD 879 (1020)
Q Consensus 800 iv~l~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~ 879 (1020)
|+++++++.+.+..++||||+++++|.+++.... ....+++..++.++.|++.||+|||+. +|+||||||+||+++
T Consensus 92 i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dlkp~Nili~ 167 (307)
T 2nru_A 92 LVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLD-GTPPLSWHMRCKIAQGAANGINFLHEN---HHIHRDIKSANILLD 167 (307)
T ss_dssp BCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGG-GCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEC
T ss_pred eEEEEEEEecCCceEEEEEecCCCcHHHHHHhcc-CCCCCCHHHHHHHHHHHHHHHHHHhcC---CeecCCCCHHHEEEc
Confidence 9999999999999999999999999999987542 235689999999999999999999999 999999999999999
Q ss_pred CCCCeEEeeccccccccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHH
Q 035998 880 GNFGAHLADFGLARLILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLI 959 (1020)
Q Consensus 880 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~ 959 (1020)
.++.+||+|||+++...............|++.|+|||.+.+ .++.++||||+|+++|+|++|+.||...........+
T Consensus 168 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~ 246 (307)
T 2nru_A 168 EAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDI 246 (307)
T ss_dssp TTCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHHCCCSBCTTBSSSBTTHH
T ss_pred CCCcEEEeecccccccccccccccccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHHCCCCcccCcchHHHHHH
Confidence 999999999999987654333333445678999999998765 4789999999999999999999999865443322222
Q ss_pred HHHHHHHhh-cccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 960 SWVIRMRQE-NRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 960 ~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
....... .......++.. ..........+.+++.+||+.||.+||+++++++.|+++
T Consensus 247 --~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~~l 304 (307)
T 2nru_A 247 --KEEIEDEEKTIEDYIDKKM-NDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEM 304 (307)
T ss_dssp --HHHHHTTSCCHHHHSCSSC-SCCCHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred --HHHhhhhhhhhhhhccccc-cccchHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHH
Confidence 1121111 11222223222 234566777899999999999999999999999999986
No 54
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=100.00 E-value=1.3e-39 Score=358.32 Aligned_cols=250 Identities=24% Similarity=0.388 Sum_probs=207.6
Q ss_pred ccCCCcCCeeeccCCeEEEEEEe-CCCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEEEe
Q 035998 741 TNNFDQANIIGCGGFGLVYRATL-PDGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIYSF 819 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 819 (1020)
.++|++.+.||+|+||.||+|.. .+++.||||++........+.+.+|+.++++++||||+++++++...+..++||||
T Consensus 19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~ 98 (297)
T 3fxz_A 19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEY 98 (297)
T ss_dssp GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEEEC
Confidence 46899999999999999999985 47899999999766555567789999999999999999999999999999999999
Q ss_pred ccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccCCC
Q 035998 820 MENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILSPY 899 (1020)
Q Consensus 820 ~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~ 899 (1020)
+++|+|.+++... .+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++......
T Consensus 99 ~~~~~L~~~~~~~-----~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 170 (297)
T 3fxz_A 99 LAGGSLTDVVTET-----CMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQ 170 (297)
T ss_dssp CTTCBHHHHHHHS-----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSTT
T ss_pred CCCCCHHHHHhhc-----CCCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEECCCCCEEEeeCCCceecCCcc
Confidence 9999999999764 589999999999999999999999 99999999999999999999999999998764322
Q ss_pred CcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccccccCccc
Q 035998 900 DTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVLDPFI 979 (1020)
Q Consensus 900 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 979 (1020)
.......||+.|+|||++.+..++.++||||+||++|||++|+.||...... ........... .....+
T Consensus 171 --~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~------~~~~~~~~~~~-~~~~~~-- 239 (297)
T 3fxz_A 171 --SKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPL------RALYLIATNGT-PELQNP-- 239 (297)
T ss_dssp --CCBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH------HHHHHHHHHCS-CCCSCG--
T ss_pred --cccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH------HHHHHHHhCCC-CCCCCc--
Confidence 2234567999999999999999999999999999999999999999643211 11111111111 111111
Q ss_pred cCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 980 YDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 980 ~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
......+.+++.+||+.||++|||++|+++
T Consensus 240 -----~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 269 (297)
T 3fxz_A 240 -----EKLSAIFRDFLNRCLEMDVEKRGSAKELLQ 269 (297)
T ss_dssp -----GGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred -----cccCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence 112235789999999999999999999986
No 55
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=100.00 E-value=2.1e-40 Score=369.43 Aligned_cols=267 Identities=28% Similarity=0.370 Sum_probs=209.7
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeCCCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCccceEeeEEeccCc----eEEE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLPDGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNLVHLQGYCMHKND----RLLI 816 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~----~~lv 816 (1020)
.++|++.++||+|+||.||+|++. ++.||||++..... ......+|+.++++++||||+++++++.+... .++|
T Consensus 23 ~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~lv 100 (322)
T 3soc_A 23 SMPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQDK-QSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLI 100 (322)
T ss_dssp TEEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEE
T ss_pred hhhchhhheecccCceEEEEEEEC-CCEEEEEEeecCch-HHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEEE
Confidence 357899999999999999999985 78999999975532 23456678999999999999999999987654 5899
Q ss_pred EEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcC-------CCCeEecCCCCCCEEEcCCCCeEEeec
Q 035998 817 YSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSC-------EPHILHRDIKSSNILLDGNFGAHLADF 889 (1020)
Q Consensus 817 ~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~-------~~~ivH~Dlkp~NIll~~~~~~kl~Df 889 (1020)
|||+++|+|.+++... .+++..++.++.|++.||+|||+.+ .++|+||||||+||+++.++.+||+||
T Consensus 101 ~e~~~~g~L~~~l~~~-----~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~DF 175 (322)
T 3soc_A 101 TAFHEKGSLSDFLKAN-----VVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADF 175 (322)
T ss_dssp EECCTTCBHHHHHHHC-----CBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECTTCCEEECCC
T ss_pred EecCCCCCHHHHHHhc-----CCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECCCCeEEEccC
Confidence 9999999999999764 4899999999999999999999751 238999999999999999999999999
Q ss_pred cccccccCCCCcccccccccccCccCccccCC-----CCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHH-----
Q 035998 890 GLARLILSPYDTHVTTDLVGTLGYIPPEYGQA-----SVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLI----- 959 (1020)
Q Consensus 890 g~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~----- 959 (1020)
|+++...............||+.|+|||++.+ ..++.++|||||||++|||+||+.||............
T Consensus 176 g~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~ 255 (322)
T 3soc_A 176 GLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQ 255 (322)
T ss_dssp TTCEEECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHHCS
T ss_pred CcccccccccCccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhhhhcc
Confidence 99987754433333444679999999999876 35667899999999999999999999765433222111
Q ss_pred -----HHHHHHHhhcccccccCccccC-ccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 960 -----SWVIRMRQENRESEVLDPFIYD-KQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 960 -----~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
.......... ..+.... .........+.+++.+||+.||++|||++|+++.|+++
T Consensus 256 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l 316 (322)
T 3soc_A 256 HPSLEDMQEVVVHKK-----KRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQM 316 (322)
T ss_dssp SCCHHHHHHHHTTSC-----CCCCCCGGGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCchhhhhhhhhccc-----CCCCccccccccchHHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 1111111111 1111111 11234556799999999999999999999999999875
No 56
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.4e-39 Score=378.98 Aligned_cols=364 Identities=18% Similarity=0.207 Sum_probs=212.1
Q ss_pred ccccccccccCCCCCcEEecCCCCCCCCCCccccCCCCCCeeeccCCCCCCCCCCccCCCCcceeeeccCccCCCCCccc
Q 035998 97 LKGKLSESLGNLVQLRFLNLSHNLLKGTVPVSLVNLPNLEVLDLSSNDLSGPLPQTINLPSIQVLDISSNSLNGSVPTSI 176 (1020)
Q Consensus 97 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~l~~L~~L~Ls~N~l~~~ip~~~ 176 (1020)
..+..+.+++++++|++|++++|.+++ +| .++.+++|++|+|++|++++. | ...+++|++|+|++|++++ +|
T Consensus 30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~-~~~l~~L~~L~Ls~N~l~~-~~--- 101 (457)
T 3bz5_A 30 MQATDTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL-D-LSQNTNLTYLACDSNKLTN-LD--- 101 (457)
T ss_dssp CCTTSEEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC-C-CTTCTTCSEEECCSSCCSC-CC---
T ss_pred cCcccccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE-c-cccCCCCCEEECcCCCCce-ee---
Confidence 344445566667777777777777764 34 566677777777777777664 2 2256666666666666653 22
Q ss_pred cccCCcccEEEccCCCCCCCCCCccccccccccccccccccccccchhhhhhcccccccccccccCCCCCcccccCCCcc
Q 035998 177 CKNSSRIRVINLSVNYFSGTLSPGLGNCASLEHLCLGMNDLTGGIADDIFQLQKLRLLGLQDNQLSGKLSPSIADLSNLV 256 (1020)
Q Consensus 177 ~~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 256 (1020)
+..+++|++|++++|++++. | ++++ ++|++|++++|++++. .++.+++|+
T Consensus 102 ~~~l~~L~~L~L~~N~l~~l-~--~~~l------------------------~~L~~L~l~~N~l~~l---~l~~l~~L~ 151 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLTKL-D--VSQN------------------------PLLTYLNCARNTLTEI---DVSHNTQLT 151 (457)
T ss_dssp CTTCTTCCEEECCSSCCSCC-C--CTTC------------------------TTCCEEECTTSCCSCC---CCTTCTTCC
T ss_pred cCCCCcCCEEECCCCcCCee-c--CCCC------------------------CcCCEEECCCCcccee---ccccCCcCC
Confidence 23444455555555544432 2 4444 4444444444444432 144455555
Q ss_pred EEEccCCcCcccCcccccCCcccceeecccccccccCCCCCcCCcccccccccccccccccccCCCCCCCcCEEEcCCCc
Q 035998 257 RLDVSSNNFSGNIPDVFAGLGEFQYLVAHSNRFTGRIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNK 336 (1020)
Q Consensus 257 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 336 (1020)
+|++++|+..+.+ .+..+++|+.|++++|++++. | ++.+++|+.|++++|++++. .+..+++|++|++++|+
T Consensus 152 ~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~ 223 (457)
T 3bz5_A 152 ELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNK 223 (457)
T ss_dssp EEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSC
T ss_pred EEECCCCCccccc--ccccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCc
Confidence 5555555333333 244455555555555555542 2 45555556666666655543 25556666666666666
Q ss_pred cCCCCCCCCCCCCCCCeEecCCCcccccCcccccCCCCCCeeeCCCCCCcchhhHHHHHhhhcccchhhhhccccCCCCC
Q 035998 337 FNGPLPTNLPRCRKLKNINLARNNFSGQIPETYKNFESLSYLSLSNSSIYNLSSALQVLQQCRNLTTLVLTLNFRNEKLP 416 (1020)
Q Consensus 337 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~i~~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 416 (1020)
+++ +| +..+++|+.|++++|++++.. +..+++|+.|++++|+++
T Consensus 224 l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~L~------------------------------ 267 (457)
T 3bz5_A 224 LTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTDLL------------------------------ 267 (457)
T ss_dssp CSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCCCS------------------------------
T ss_pred ccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCCCC------------------------------
Confidence 665 44 566666777777777666542 344556666666554321
Q ss_pred CCccccccCceEEEecccccccccchhhhcCCCCcEEecccccccccccccccCcCcCcEEeCCCCcccccCCCCCCCCc
Q 035998 417 TDPRLHFANLKVLVIASCGLRGSIPQWLRGCSKLQLVDLSWNQLSGTIPVWFGGFQDLFYLDLSNNTFTGEIPKNLTGLP 496 (1020)
Q Consensus 417 ~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 496 (1020)
.|++++|.+.+.+| ++.+++|+.|++++|++.+.+|. ...+|+.|++++| +
T Consensus 268 -----------~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~ 318 (457)
T 3bz5_A 268 -----------EIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------P 318 (457)
T ss_dssp -----------CCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------T
T ss_pred -----------EEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhc-------------c
Confidence 11222222333333 23444455555555544444442 2233334444433 1
Q ss_pred ccccccCcCCCCCCCcccceeecccccccccccccCCCCeeecccCccccCCCccccCCCcceEEEecCCcceeccCccc
Q 035998 497 SLITRNISLEEPSPDFPFFMRRNVSARGLQYNQIWSFPPTIDLSLNRLDGSIWPEFGNLKKLHVFDLKHNNLSGPIPSEL 576 (1020)
Q Consensus 497 ~L~~l~~s~~~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~l~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~~p~~~ 576 (1020)
+| +.|++++|+|++. .++.+++|+.|++++|+|++
T Consensus 319 ~L------------------------------------~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~------ 353 (457)
T 3bz5_A 319 KL------------------------------------VYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD------ 353 (457)
T ss_dssp TC------------------------------------CEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB------
T ss_pred cC------------------------------------CEEECCCCccccc---ccccCCcCcEEECCCCCCCC------
Confidence 11 4688899999884 38899999999999999986
Q ss_pred cCCCcccEEEccCCcccccCCccccccccccccccccccccccCCCC
Q 035998 577 TGMTSLETLDLSYNNLSGAIPISLEKLSFLSKFSVANNHLTGRIPSG 623 (1020)
Q Consensus 577 ~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~~p~~ 623 (1020)
++.|+.|++++|+++|. .++..|..+++++|+|+|.||..
T Consensus 354 --l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 354 --FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp --CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred --ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 24677788999999986 46778899999999999999963
No 57
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=100.00 E-value=4.8e-40 Score=363.76 Aligned_cols=261 Identities=30% Similarity=0.472 Sum_probs=203.0
Q ss_pred HHHhccCCCcCCeeeccCCeEEEEEEeCCCCEEEEEEecCCc--hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceE
Q 035998 737 ILESTNNFDQANIIGCGGFGLVYRATLPDGRNVAIKRLSGDC--GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRL 814 (1020)
Q Consensus 737 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 814 (1020)
+....++|++.+.||+|+||.||+|+. +++.||||++.... ....+.+.+|++++++++||||+++++++.+....+
T Consensus 32 ~~i~~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~ 110 (309)
T 3p86_A 32 MDIPWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLS 110 (309)
T ss_dssp CBCCGGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCE
T ss_pred ccCChhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceE
Confidence 334457899999999999999999987 58899999987654 233467889999999999999999999999999999
Q ss_pred EEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCC--eEecCCCCCCEEEcCCCCeEEeecccc
Q 035998 815 LIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPH--ILHRDIKSSNILLDGNFGAHLADFGLA 892 (1020)
Q Consensus 815 lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~--ivH~Dlkp~NIll~~~~~~kl~Dfg~~ 892 (1020)
+||||+++|+|.+++.... ....+++..++.++.|++.||+|||+. + |+||||||+||+++.++.+||+|||++
T Consensus 111 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~i~~qi~~aL~~LH~~---~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a 186 (309)
T 3p86_A 111 IVTEYLSRGSLYRLLHKSG-AREQLDERRRLSMAYDVAKGMNYLHNR---NPPIVHRNLKSPNLLVDKKYTVKVCDFGLS 186 (309)
T ss_dssp EEEECCTTCBHHHHHHSTT-HHHHSCHHHHHHHHHHHHHHHHHHHTS---SSCCCCTTCCGGGEEECTTCCEEECCCC--
T ss_pred EEEecCCCCcHHHHHhhcC-CCCCCCHHHHHHHHHHHHHHHHHHHcC---CCCEECCCCChhhEEEeCCCcEEECCCCCC
Confidence 9999999999999997531 112489999999999999999999999 8 999999999999999999999999999
Q ss_pred ccccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccc
Q 035998 893 RLILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRES 972 (1020)
Q Consensus 893 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~ 972 (1020)
+..... ........||+.|+|||++.+..++.++||||+|+++|||++|+.||...... ... ..........
T Consensus 187 ~~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~~---~~~---~~~~~~~~~~ 258 (309)
T 3p86_A 187 RLKAST--FLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPA---QVV---AAVGFKCKRL 258 (309)
T ss_dssp -----------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCHH---HHH---HHHHHSCCCC
T ss_pred cccccc--ccccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH---HHH---HHHHhcCCCC
Confidence 765332 12234467899999999999999999999999999999999999999754321 111 1111111111
Q ss_pred cccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 973 EVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 973 ~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
.. +......+.+++.+||+.||++|||++++++.|+.+
T Consensus 259 ~~---------~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~~L~~~ 296 (309)
T 3p86_A 259 EI---------PRNLNPQVAAIIEGCWTNEPWKRPSFATIMDLLRPL 296 (309)
T ss_dssp CC---------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CC---------CccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 10 111223588999999999999999999999999875
No 58
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=100.00 E-value=2.1e-39 Score=361.04 Aligned_cols=247 Identities=25% Similarity=0.317 Sum_probs=205.1
Q ss_pred ccCCCcCCeeeccCCeEEEEEEe-CCCCEEEEEEecCCc--hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATL-PDGRNVAIKRLSGDC--GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIY 817 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 817 (1020)
.++|++.+.||+|+||.||+|++ .+|+.||||++.... ....+.+.+|+++++.++||||+++++++.+.+..++||
T Consensus 14 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~ 93 (328)
T 3fe3_A 14 IGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIM 93 (328)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEE
Confidence 46799999999999999999987 579999999987543 334567889999999999999999999999999999999
Q ss_pred EeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccC
Q 035998 818 SFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILS 897 (1020)
Q Consensus 818 e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~ 897 (1020)
||+++|+|.+++... ..+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++....
T Consensus 94 e~~~~~~L~~~l~~~----~~l~~~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~ 166 (328)
T 3fe3_A 94 EYASGGEVFDYLVAH----GRMKEKEARSKFRQIVSAVQYCHQK---RIVHRDLKAENLLLDADMNIKIADFGFSNEFTV 166 (328)
T ss_dssp CCCTTCBHHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECSTTCCGGGSS
T ss_pred ECCCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHC---CEeccCCCHHHEEEcCCCCEEEeeccCceecCC
Confidence 999999999999765 4689999999999999999999999 999999999999999999999999999987633
Q ss_pred CCCcccccccccccCccCccccCCCCCC-chhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccccccC
Q 035998 898 PYDTHVTTDLVGTLGYIPPEYGQASVAT-YKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVLD 976 (1020)
Q Consensus 898 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~-~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 976 (1020)
. .......||+.|+|||++.+..+. .++||||+||++|||++|+.||..... ............. .
T Consensus 167 ~---~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~------~~~~~~i~~~~~~----~ 233 (328)
T 3fe3_A 167 G---GKLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNL------KELRERVLRGKYR----I 233 (328)
T ss_dssp S---CGGGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSSH------HHHHHHHHHCCCC----C
T ss_pred C---CccccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCCH------HHHHHHHHhCCCC----C
Confidence 2 234456899999999998887764 899999999999999999999975321 1111122111110 0
Q ss_pred ccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 977 PFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 977 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
| ......+.+++.+||+.||.+|||++|+++
T Consensus 234 p-------~~~s~~~~~li~~~L~~dP~~R~t~~eil~ 264 (328)
T 3fe3_A 234 P-------FYMSTDCENLLKRFLVLNPIKRGTLEQIMK 264 (328)
T ss_dssp C-------TTSCHHHHHHHHHHCCSSTTTSCCHHHHTT
T ss_pred C-------CCCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 1 011235789999999999999999999986
No 59
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=100.00 E-value=1.1e-40 Score=379.97 Aligned_cols=258 Identities=23% Similarity=0.345 Sum_probs=208.6
Q ss_pred hccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCch-hhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEE
Q 035998 740 STNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCG-QMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIY 817 (1020)
Q Consensus 740 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 817 (1020)
..++|++.+.||+|+||.||+|++. +++.||||++..... ...+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 112 ~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 191 (377)
T 3cbl_A 112 NHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVM 191 (377)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEEE
T ss_pred chHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEEE
Confidence 3467889999999999999999986 789999999876532 33456889999999999999999999999999999999
Q ss_pred EeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccC
Q 035998 818 SFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILS 897 (1020)
Q Consensus 818 e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~ 897 (1020)
||+++|+|.++++.. ...+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++....
T Consensus 192 e~~~~g~L~~~l~~~---~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~ 265 (377)
T 3cbl_A 192 ELVQGGDFLTFLRTE---GARLRVKTLLQMVGDAAAGMEYLESK---CCIHRDLAARNCLVTEKNVLKISDFGMSREEAD 265 (377)
T ss_dssp ECCTTCBHHHHHHHH---GGGCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCGGGCEECTT
T ss_pred EcCCCCCHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHHHC---CcCCcccCHHHEEEcCCCcEEECcCCCceecCC
Confidence 999999999999764 23588999999999999999999999 999999999999999999999999999986533
Q ss_pred CCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHc-CCCCCCCCCCCCcccHHHHHHHHHhhcccccccC
Q 035998 898 PYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLT-GKRPMDMCKPKGSRDLISWVIRMRQENRESEVLD 976 (1020)
Q Consensus 898 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 976 (1020)
...........+++.|+|||++.++.++.++|||||||++|||++ |..||...... ... ......... ..
T Consensus 266 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~~---~~~---~~~~~~~~~---~~ 336 (377)
T 3cbl_A 266 GVYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQ---QTR---EFVEKGGRL---PC 336 (377)
T ss_dssp SEEECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCHH---HHH---HHHHTTCCC---CC
T ss_pred CceeecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHH---HHH---HHHHcCCCC---CC
Confidence 211111122345678999999988899999999999999999999 99999754321 111 111111111 00
Q ss_pred ccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 977 PFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 977 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
+......+.+++.+||+.||++|||++++++.|+++
T Consensus 337 -------~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i 372 (377)
T 3cbl_A 337 -------PELCPDAVFRLMEQCWAYEPGQRPSFSTIYQELQSI 372 (377)
T ss_dssp -------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred -------CCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHH
Confidence 111224688999999999999999999999999875
No 60
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=100.00 E-value=3.4e-40 Score=367.88 Aligned_cols=257 Identities=28% Similarity=0.432 Sum_probs=207.1
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC----CCCEEEEEEecCCc-hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP----DGRNVAIKRLSGDC-GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLL 815 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~----~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 815 (1020)
.++|++.+.||+|+||.||+|++. .+..||||++.... ....+.+.+|++++++++||||+++++++.+.+..++
T Consensus 48 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l 127 (325)
T 3kul_A 48 ASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMI 127 (325)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEE
T ss_pred hhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEE
Confidence 357899999999999999999874 34469999998653 3445678999999999999999999999999999999
Q ss_pred EEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccc
Q 035998 816 IYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLI 895 (1020)
Q Consensus 816 v~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~ 895 (1020)
||||+++|+|.+++... ...+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++..
T Consensus 128 v~e~~~~~~L~~~l~~~---~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~ 201 (325)
T 3kul_A 128 VTEYMENGSLDTFLRTH---DGQFTIMQLVGMLRGVGAGMRYLSDL---GYVHRDLAARNVLVDSNLVCKVSDFGLSRVL 201 (325)
T ss_dssp EEECCTTCBHHHHHHTT---TTCSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCSSCEEC
T ss_pred EeeCCCCCcHHHHHHhc---ccCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEECCCCCEEECCCCccccc
Confidence 99999999999999653 34689999999999999999999999 9999999999999999999999999999876
Q ss_pred cCCCCc-ccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHc-CCCCCCCCCCCCcccHHHHHHHHHhhccccc
Q 035998 896 LSPYDT-HVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLT-GKRPMDMCKPKGSRDLISWVIRMRQENRESE 973 (1020)
Q Consensus 896 ~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 973 (1020)
...... .......+|+.|+|||++.+..++.++||||+|+++|||++ |..||...... +. ...........
T Consensus 202 ~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~---~~---~~~~~~~~~~~- 274 (325)
T 3kul_A 202 EDDPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNR---DV---ISSVEEGYRLP- 274 (325)
T ss_dssp C----CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCHH---HH---HHHHHTTCCCC-
T ss_pred ccCccceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCHH---HH---HHHHHcCCCCC-
Confidence 543221 12233456778999999998899999999999999999999 99999653221 11 11111111110
Q ss_pred ccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 974 VLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 974 ~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
.+......+.+++.+||+.||++||+++++++.|+++
T Consensus 275 ---------~~~~~~~~l~~li~~~l~~dp~~Rps~~eil~~L~~l 311 (325)
T 3kul_A 275 ---------APMGCPHALHQLMLDCWHKDRAQRPRFSQIVSVLDAL 311 (325)
T ss_dssp ---------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred ---------CCCCcCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 0111224688999999999999999999999999876
No 61
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.6e-39 Score=362.15 Aligned_cols=249 Identities=23% Similarity=0.310 Sum_probs=197.3
Q ss_pred hccCCCcCCeeeccCCeEEEEEEe-CCCCEEEEEEecCCch-hhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEE
Q 035998 740 STNNFDQANIIGCGGFGLVYRATL-PDGRNVAIKRLSGDCG-QMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIY 817 (1020)
Q Consensus 740 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 817 (1020)
..++|++.+.||+|+||.||+|+. .+|+.||||++..... .....+.+|++++++++||||+++++++.+.+..++||
T Consensus 8 l~~~y~i~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~Ei~~l~~l~hpnIv~l~~~~~~~~~~~lv~ 87 (347)
T 3zgw_A 8 LLKYYELHETIGTGGFAKVKLACHILTGEMVAIKIMDKNTLGSDLPRIKTEIEALKNLRHQHICQLYHVLETANKIFMVL 87 (347)
T ss_dssp TTTTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESSCC---CCHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HhcCeEEEEEEEcCCCeEEEEEEECCCCCEEEEEEEEccccchHHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEEE
Confidence 357899999999999999999986 4789999999876542 22346889999999999999999999999999999999
Q ss_pred EeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccC
Q 035998 818 SFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILS 897 (1020)
Q Consensus 818 e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~ 897 (1020)
||+++|+|.+++... ..+++..++.++.||+.||+|||+. +|+||||||+||+++.++.+||+|||++.....
T Consensus 88 E~~~gg~L~~~l~~~----~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~kL~DFG~a~~~~~ 160 (347)
T 3zgw_A 88 EYCPGGELFDYIISQ----DRLSEEETRVVFRQIVSAVAYVHSQ---GYAHRDLKPENLLFDEYHKLKLIDFGLCAKPKG 160 (347)
T ss_dssp ECCTTCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBC---
T ss_pred eCCCCCCHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCccHHHEEEcCCCCEEEEeccCcccccC
Confidence 999999999999765 4689999999999999999999999 999999999999999999999999999876533
Q ss_pred CCCcccccccccccCccCccccCCCCC-CchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhc-cccccc
Q 035998 898 PYDTHVTTDLVGTLGYIPPEYGQASVA-TYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQEN-RESEVL 975 (1020)
Q Consensus 898 ~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 975 (1020)
.. ........||+.|+|||++.+..+ +.++||||+||++|||++|+.||..... ......+.... ..+.
T Consensus 161 ~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~~------~~~~~~i~~~~~~~p~-- 231 (347)
T 3zgw_A 161 NK-DYHLQTCCGSLAYAAPELIQGKSYLGSEADVWSMGILLYVLMCGFLPFDDDNV------MALYKKIMRGKYDVPK-- 231 (347)
T ss_dssp ------------CGGGCCHHHHTTC---CCHHHHHHHHHHHHHHHHSSCSSCCSSH------HHHHHHHHHTCCCCCT--
T ss_pred CC-CccccccCCccCccCHHHHcCCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCH------HHHHHHHHcCCCCCCC--
Confidence 22 222344678999999999988775 8999999999999999999999974321 11112221111 1111
Q ss_pred CccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 976 DPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 976 d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
. ....+.+++.+||+.||++|||++|+++
T Consensus 232 ------~----~s~~~~~li~~~L~~dP~~Rps~~eil~ 260 (347)
T 3zgw_A 232 ------W----LSPSSILLLQQMLQVDPKKRISMKNLLN 260 (347)
T ss_dssp ------T----CCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred ------C----CCHHHHHHHHHHcccCHhHCcCHHHHhc
Confidence 1 1235788999999999999999999987
No 62
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=5e-40 Score=356.62 Aligned_cols=255 Identities=29% Similarity=0.463 Sum_probs=210.2
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeCCCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEEEec
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLPDGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIYSFM 820 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 820 (1020)
.++|++.+.||+|+||.||+|+..+++.||+|++..... ..+++.+|++++++++||||+++++++.+....++||||+
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 87 (269)
T 4hcu_A 9 PSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFM 87 (269)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTSB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECC
T ss_pred hhhceeeheecCCCccEEEEEEecCCCeEEEEEeccccc-CHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEeC
Confidence 357899999999999999999998889999999986543 3467899999999999999999999999999999999999
Q ss_pred cCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccCCCC
Q 035998 821 ENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILSPYD 900 (1020)
Q Consensus 821 ~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~ 900 (1020)
++++|.+++... ...+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++......
T Consensus 88 ~~~~L~~~l~~~---~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~- 160 (269)
T 4hcu_A 88 EHGCLSDYLRTQ---RGLFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ- 160 (269)
T ss_dssp TTCBHHHHHHTT---TTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHH-
T ss_pred CCCcHHHHHHhc---CcccCHHHHHHHHHHHHHHHHHHHhC---CeecCCcchheEEEcCCCCEEeccccccccccccc-
Confidence 999999999754 34689999999999999999999999 99999999999999999999999999998653321
Q ss_pred cccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHc-CCCCCCCCCCCCcccHHHHHHHHHhhcccccccCccc
Q 035998 901 THVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLT-GKRPMDMCKPKGSRDLISWVIRMRQENRESEVLDPFI 979 (1020)
Q Consensus 901 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 979 (1020)
........+++.|+|||++.+..++.++||||+|+++|||++ |+.||...... ........... ...+.
T Consensus 161 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~~------~~~~~~~~~~~---~~~~~- 230 (269)
T 4hcu_A 161 YTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNS------EVVEDISTGFR---LYKPR- 230 (269)
T ss_dssp HHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH------HHHHHHHTTCC---CCCCT-
T ss_pred cccccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCHH------HHHHHHhcCcc---CCCCC-
Confidence 122233456778999999998999999999999999999999 99999743221 11112211111 01111
Q ss_pred cCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 980 YDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 980 ~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
.....+.+++.+||+.||++||+++|+++.|+++
T Consensus 231 ------~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~l 264 (269)
T 4hcu_A 231 ------LASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEI 264 (269)
T ss_dssp ------TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred ------cCCHHHHHHHHHHccCCcccCcCHHHHHHHHHHH
Confidence 1123588999999999999999999999999876
No 63
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=100.00 E-value=9e-39 Score=355.71 Aligned_cols=261 Identities=25% Similarity=0.357 Sum_probs=212.3
Q ss_pred ccccHHHHHHhccC----------CCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCC
Q 035998 730 KEISIDDILESTNN----------FDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHP 798 (1020)
Q Consensus 730 ~~~~~~~~~~~~~~----------~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ 798 (1020)
..++.+++..+++. |+..+.||+|+||.||+|+.. +|+.||||++........+.+.+|+.++++++||
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ 102 (321)
T 2c30_A 23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHF 102 (321)
T ss_dssp --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCT
T ss_pred CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCC
Confidence 34566777666653 677789999999999999976 7999999999866555567789999999999999
Q ss_pred ccceEeeEEeccCceEEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEE
Q 035998 799 NLVHLQGYCMHKNDRLLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILL 878 (1020)
Q Consensus 799 niv~l~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll 878 (1020)
||+++++++...+..++||||+++++|.+++... .+++..+..++.|++.||+|||+. +|+||||||+||++
T Consensus 103 niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-----~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll 174 (321)
T 2c30_A 103 NVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQV-----RLNEEQIATVCEAVLQALAYLHAQ---GVIHRDIKSDSILL 174 (321)
T ss_dssp TBCCEEEEEEETTEEEEEECCCCSCBHHHHHTTC-----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEE
T ss_pred CcceEEEEEEECCEEEEEEecCCCCCHHHHHHhc-----CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEE
Confidence 9999999999999999999999999999988643 589999999999999999999999 99999999999999
Q ss_pred cCCCCeEEeeccccccccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccH
Q 035998 879 DGNFGAHLADFGLARLILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDL 958 (1020)
Q Consensus 879 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~ 958 (1020)
+.++.+||+|||+++...... .......||+.|+|||++.+..++.++||||+|+++|||++|+.||.....
T Consensus 175 ~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~~------ 246 (321)
T 2c30_A 175 TLDGRVKLSDFGFCAQISKDV--PKRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSP------ 246 (321)
T ss_dssp CTTCCEEECCCTTCEECCSSS--CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH------
T ss_pred CCCCcEEEeeeeeeeecccCc--cccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH------
Confidence 999999999999998764321 223456799999999999999999999999999999999999999964321
Q ss_pred HHHHHHHHhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 959 ISWVIRMRQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 959 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
........... ...... .......+.+++.+||+.||++|||++|+++
T Consensus 247 ~~~~~~~~~~~-~~~~~~-------~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 294 (321)
T 2c30_A 247 VQAMKRLRDSP-PPKLKN-------SHKVSPVLRDFLERMLVRDPQERATAQELLD 294 (321)
T ss_dssp HHHHHHHHHSS-CCCCTT-------GGGSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred HHHHHHHhcCC-CCCcCc-------cccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 11111121111 111000 0111235789999999999999999999986
No 64
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=100.00 E-value=1.3e-39 Score=369.39 Aligned_cols=271 Identities=27% Similarity=0.416 Sum_probs=215.8
Q ss_pred ccHHHHHHhccCCCcCCeeeccCCeEEEEEEe------CCCCEEEEEEecCCch-hhHHHHHHHHHHHHHc-CCCccceE
Q 035998 732 ISIDDILESTNNFDQANIIGCGGFGLVYRATL------PDGRNVAIKRLSGDCG-QMEREFRAEVEALSRA-QHPNLVHL 803 (1020)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~------~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l-~h~niv~l 803 (1020)
+...++....++|++.+.||+|+||.||+|++ .+++.||||++..... ...+.+.+|+++++++ +||||+++
T Consensus 12 ~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~ 91 (359)
T 3vhe_A 12 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 91 (359)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred CCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeee
Confidence 34455556678999999999999999999973 2467899999986543 3346789999999999 79999999
Q ss_pred eeEEeccCc-eEEEEEeccCCChhhhhhhcCCC-----------------------------------------------
Q 035998 804 QGYCMHKND-RLLIYSFMENGSLDYWLHEKLDG----------------------------------------------- 835 (1020)
Q Consensus 804 ~~~~~~~~~-~~lv~e~~~~g~L~~~l~~~~~~----------------------------------------------- 835 (1020)
++++.+.+. .++||||+++|+|.+++......
T Consensus 92 ~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (359)
T 3vhe_A 92 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEK 171 (359)
T ss_dssp EEEECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC------------------------------------------
T ss_pred eeeeecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCcccccccccccccc
Confidence 999987654 89999999999999999765321
Q ss_pred ---------------CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccCCCC
Q 035998 836 ---------------PSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILSPYD 900 (1020)
Q Consensus 836 ---------------~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~ 900 (1020)
...+++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++.......
T Consensus 172 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~ 248 (359)
T 3vhe_A 172 SLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPD 248 (359)
T ss_dssp ------------CTTTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCTT
T ss_pred ccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChhhEEEcCCCcEEEEeccceeeeccccc
Confidence 12289999999999999999999999 999999999999999999999999999987654444
Q ss_pred cccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHc-CCCCCCCCCCCCcccHHHHHHHHHhhcccccccCccc
Q 035998 901 THVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLT-GKRPMDMCKPKGSRDLISWVIRMRQENRESEVLDPFI 979 (1020)
Q Consensus 901 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 979 (1020)
........||+.|+|||++.+..++.++||||+|+++|||+| |+.||....... .... ....... .. .+
T Consensus 249 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~--~~~~---~~~~~~~-~~--~~-- 318 (359)
T 3vhe_A 249 YVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDE--EFCR---RLKEGTR-MR--AP-- 318 (359)
T ss_dssp CEEC--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSH--HHHH---HHHHTCC-CC--CC--
T ss_pred chhccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhH--HHHH---HHHcCCC-CC--CC--
Confidence 444455678899999999989999999999999999999999 999997543321 1111 1111111 11 01
Q ss_pred cCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhcC
Q 035998 980 YDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSII 1020 (1020)
Q Consensus 980 ~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~il 1020 (1020)
......+.+++.+||+.||++|||++|+++.|++++
T Consensus 319 -----~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~ 354 (359)
T 3vhe_A 319 -----DYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLL 354 (359)
T ss_dssp -----TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred -----CCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHH
Confidence 111235889999999999999999999999999863
No 65
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=5.5e-39 Score=373.90 Aligned_cols=311 Identities=19% Similarity=0.205 Sum_probs=245.1
Q ss_pred CceEEEecCCCcccccccccccCCCCCcEEecCCCCCCCCCCccccCCCCCCeeeccCCCCCCCCCCccCCCCcceeeec
Q 035998 85 GRVTGLFLYKRRLKGKLSESLGNLVQLRFLNLSHNLLKGTVPVSLVNLPNLEVLDLSSNDLSGPLPQTINLPSIQVLDIS 164 (1020)
Q Consensus 85 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~l~~L~~L~Ls 164 (1020)
.+++.|+++++.+++. | .++.+++|++|+|++|++++ +| ++.+++|++|+|++|+|++. + ..++++|++|+|+
T Consensus 42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~-~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D-VTPLTKLTYLNCD 114 (457)
T ss_dssp TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C-CTTCTTCCEEECC
T ss_pred CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e-cCCCCcCCEEECC
Confidence 5789999999999975 5 79999999999999999996 44 89999999999999999986 3 3389999999999
Q ss_pred cCccCCCCCccccccCCcccEEEccCCCCCCCCCCccccccccccccccccccccccchhhhhhcccccccccccccCCC
Q 035998 165 SNSLNGSVPTSICKNSSRIRVINLSVNYFSGTLSPGLGNCASLEHLCLGMNDLTGGIADDIFQLQKLRLLGLQDNQLSGK 244 (1020)
Q Consensus 165 ~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 244 (1020)
+|++++ +| +..+++|++|++++|++++. .++++++|++|++++|+..+.+ .+..+++|++|++++|++++
T Consensus 115 ~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~- 184 (457)
T 3bz5_A 115 TNKLTK-LD---VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE- 184 (457)
T ss_dssp SSCCSC-CC---CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-
T ss_pred CCcCCe-ec---CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-
Confidence 999995 55 57899999999999999974 3889999999999999665555 47888999999999999996
Q ss_pred CCcccccCCCccEEEccCCcCcccCcccccCCcccceeecccccccccCCCCCcCCcccccccccccccccccccCCCCC
Q 035998 245 LSPSIADLSNLVRLDVSSNNFSGNIPDVFAGLGEFQYLVAHSNRFTGRIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPAL 324 (1020)
Q Consensus 245 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 324 (1020)
+| +..+++|++|++++|++++. .++.+++|++|++++|++++ +| ++.+++|+.|++++|++++.. +..+
T Consensus 185 l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l 253 (457)
T 3bz5_A 185 LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTL 253 (457)
T ss_dssp CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTC
T ss_pred ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHC
Confidence 44 78889999999999999875 37888899999999999987 45 778888888899988888764 4456
Q ss_pred CCcCEEEcCCCccCCCCCCCCCCCCCCCeEecCCCcccccCcccccCCCCCCeeeCCCCCCcc-hhhHHHHHhhhcccch
Q 035998 325 TNLTSLDLGTNKFNGPLPTNLPRCRKLKNINLARNNFSGQIPETYKNFESLSYLSLSNSSIYN-LSSALQVLQQCRNLTT 403 (1020)
Q Consensus 325 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~i~~-l~~~~~~l~~l~~L~~ 403 (1020)
++|+.|++++| +|+.|++++|++.+.+| ++.+++|+.|++++|+... +|.
T Consensus 254 ~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~------------- 304 (457)
T 3bz5_A 254 SKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC------------- 304 (457)
T ss_dssp TTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC-------------
T ss_pred CCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc-------------
Confidence 77888888776 35677888888887776 4677888888888886321 110
Q ss_pred hhhhccccCCCCCCCccccccCceEEEecccccccccchhhhcCCCCcEEecccccccccccccccCcCcCcEEeCCCCc
Q 035998 404 LVLTLNFRNEKLPTDPRLHFANLKVLVIASCGLRGSIPQWLRGCSKLQLVDLSWNQLSGTIPVWFGGFQDLFYLDLSNNT 483 (1020)
Q Consensus 404 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 483 (1020)
..++|+.|+ ++++++|+.|++++|+|++. + ++.+++|+.|++++|+
T Consensus 305 ------------------~~~~L~~L~-------------l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 305 ------------------QAAGITELD-------------LSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp ------------------TTCCCSCCC-------------CTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSC
T ss_pred ------------------CCCcceEec-------------hhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCC
Confidence 011222222 23335677777777777753 2 6677777777777777
Q ss_pred ccc
Q 035998 484 FTG 486 (1020)
Q Consensus 484 l~~ 486 (1020)
+++
T Consensus 351 l~~ 353 (457)
T 3bz5_A 351 IQD 353 (457)
T ss_dssp CCB
T ss_pred CCC
Confidence 664
No 66
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=100.00 E-value=8.9e-40 Score=354.46 Aligned_cols=255 Identities=25% Similarity=0.464 Sum_probs=210.4
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeCCCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEEEec
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLPDGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIYSFM 820 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 820 (1020)
.++|++.+.||+|+||.||+|+.+++..||||++..... ..+++.+|++++++++||||+++++++.+....++||||+
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 85 (268)
T 3sxs_A 7 REEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSM-SEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYI 85 (268)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTB-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECC
T ss_pred hhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCCC-cHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEEcc
Confidence 467899999999999999999998888999999976543 3467899999999999999999999999999999999999
Q ss_pred cCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccCCCC
Q 035998 821 ENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILSPYD 900 (1020)
Q Consensus 821 ~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~ 900 (1020)
++++|.+++... ...+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++......
T Consensus 86 ~~~~L~~~l~~~---~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~- 158 (268)
T 3sxs_A 86 SNGCLLNYLRSH---GKGLEPSQLLEMCYDVCEGMAFLESH---QFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQ- 158 (268)
T ss_dssp TTCBHHHHHHHH---GGGCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCSGGGEEECTTCCEEECCTTCEEECCTTC-
T ss_pred CCCcHHHHHHHc---CCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCcCcceEEECCCCCEEEccCccceecchhh-
Confidence 999999999764 23589999999999999999999999 99999999999999999999999999998764432
Q ss_pred cccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHc-CCCCCCCCCCCCcccHHHHHHHHHhhcccccccCccc
Q 035998 901 THVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLT-GKRPMDMCKPKGSRDLISWVIRMRQENRESEVLDPFI 979 (1020)
Q Consensus 901 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 979 (1020)
........+++.|+|||.+.+..++.++||||+|+++|||++ |+.||...... ........... ...+..
T Consensus 159 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~------~~~~~~~~~~~---~~~~~~ 229 (268)
T 3sxs_A 159 YVSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNS------EVVLKVSQGHR---LYRPHL 229 (268)
T ss_dssp EEECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHH------HHHHHHHTTCC---CCCCTT
T ss_pred hhcccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccChH------HHHHHHHcCCC---CCCCCc
Confidence 222233456778999999988889999999999999999999 99999643321 11111111111 111111
Q ss_pred cCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 980 YDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 980 ~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
....+.+++.+||+.||++|||++|+++.|+++
T Consensus 230 -------~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l 262 (268)
T 3sxs_A 230 -------ASDTIYQIMYSCWHELPEKRPTFQQLLSSIEPL 262 (268)
T ss_dssp -------SCHHHHHHHHHTTCSSGGGSCCHHHHHHHHGGG
T ss_pred -------ChHHHHHHHHHHcCCChhhCcCHHHHHHHHHHh
Confidence 123588999999999999999999999999986
No 67
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.4e-39 Score=371.64 Aligned_cols=260 Identities=27% Similarity=0.370 Sum_probs=212.5
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC--------CCCEEEEEEecCCch-hhHHHHHHHHHHHHHc-CCCccceEeeEEecc
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP--------DGRNVAIKRLSGDCG-QMEREFRAEVEALSRA-QHPNLVHLQGYCMHK 810 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~--------~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~ 810 (1020)
.++|.+.+.||+|+||.||+|+.. .+..||||++..... ...+.+.+|+++++++ +||||+++++++.+.
T Consensus 68 ~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~ 147 (382)
T 3tt0_A 68 RDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD 147 (382)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred hhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeeccC
Confidence 467899999999999999999852 235799999976543 3446789999999999 999999999999999
Q ss_pred CceEEEEEeccCCChhhhhhhcCC------------CCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEE
Q 035998 811 NDRLLIYSFMENGSLDYWLHEKLD------------GPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILL 878 (1020)
Q Consensus 811 ~~~~lv~e~~~~g~L~~~l~~~~~------------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll 878 (1020)
+..++||||+++|+|.+++..... ....+++..++.++.|++.||+|||+. +|+||||||+||++
T Consensus 148 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll 224 (382)
T 3tt0_A 148 GPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLV 224 (382)
T ss_dssp SSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEE
T ss_pred CceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCcceEEE
Confidence 999999999999999999987532 124689999999999999999999999 99999999999999
Q ss_pred cCCCCeEEeeccccccccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHc-CCCCCCCCCCCCccc
Q 035998 879 DGNFGAHLADFGLARLILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLT-GKRPMDMCKPKGSRD 957 (1020)
Q Consensus 879 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-g~~pf~~~~~~~~~~ 957 (1020)
+.++.+||+|||+++...............+|+.|+|||++.+..++.++|||||||++|||++ |..||.....
T Consensus 225 ~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~~----- 299 (382)
T 3tt0_A 225 TEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPV----- 299 (382)
T ss_dssp CTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH-----
T ss_pred cCCCcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCH-----
Confidence 9999999999999987654433334445667889999999999999999999999999999999 9999964321
Q ss_pred HHHHHHHHHhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 958 LISWVIRMRQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 958 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
............ ... +......+.+++.+||+.||++||+++|+++.|+++
T Consensus 300 -~~~~~~~~~~~~-~~~---------~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~ 350 (382)
T 3tt0_A 300 -EELFKLLKEGHR-MDK---------PSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRI 350 (382)
T ss_dssp -HHHHHHHHTTCC-CCC---------CSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred -HHHHHHHHcCCC-CCC---------CccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 111112211111 110 011223688999999999999999999999999876
No 68
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=100.00 E-value=4.5e-39 Score=356.57 Aligned_cols=266 Identities=26% Similarity=0.346 Sum_probs=205.0
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeCCCCEEEEEEecCCch--hhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEEE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLPDGRNVAIKRLSGDCG--QMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIYS 818 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 818 (1020)
.++|++.+.||+|+||.||+|+..+++.||+|++..... ...+.+.+|++++++++||||+++++++.+.+..++|||
T Consensus 20 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 99 (311)
T 3niz_A 20 MEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVFE 99 (311)
T ss_dssp SCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEEE
T ss_pred HhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEEc
Confidence 467999999999999999999998899999999975432 234678899999999999999999999999999999999
Q ss_pred eccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccCC
Q 035998 819 FMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILSP 898 (1020)
Q Consensus 819 ~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~ 898 (1020)
|+++ ++.+++... ...+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++....+
T Consensus 100 ~~~~-~l~~~~~~~---~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~ 172 (311)
T 3niz_A 100 FMEK-DLKKVLDEN---KTGLQDSQIKIYLYQLLRGVAHCHQH---RILHRDLKPQNLLINSDGALKLADFGLARAFGIP 172 (311)
T ss_dssp CCSE-EHHHHHHTC---TTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEETTSC
T ss_pred CCCC-CHHHHHHhc---cCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCchHhEEECCCCCEEEccCcCceecCCC
Confidence 9985 777777653 34689999999999999999999999 9999999999999999999999999999876432
Q ss_pred CCcccccccccccCccCccccCC-CCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcc---cccc
Q 035998 899 YDTHVTTDLVGTLGYIPPEYGQA-SVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENR---ESEV 974 (1020)
Q Consensus 899 ~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 974 (1020)
. .......||+.|+|||++.+ ..++.++||||+||++|||++|+.||......+.. ........... ....
T Consensus 173 ~--~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~---~~i~~~~~~~~~~~~~~~ 247 (311)
T 3niz_A 173 V--RSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQL---PKIFSILGTPNPREWPQV 247 (311)
T ss_dssp C--C---CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTTHH---HHHHHHHCCCCTTTSGGG
T ss_pred c--ccccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChHHHH---HHHHHHHCCCChHHhhhh
Confidence 2 22334578999999998876 56899999999999999999999999765443322 22211111110 0000
Q ss_pred c-------------CccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH--HHHh
Q 035998 975 L-------------DPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS--WLDS 1018 (1020)
Q Consensus 975 ~-------------d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~--~L~~ 1018 (1020)
. +........+....++.+++.+||+.||++|||++|+++ +|++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~ 306 (311)
T 3niz_A 248 QELPLWKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMNHPYFKD 306 (311)
T ss_dssp TTSHHHHSCCCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHTSGGGTT
T ss_pred hccchhhhcccccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhcCccccc
Confidence 0 000000001112246789999999999999999999987 5543
No 69
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=100.00 E-value=4.7e-40 Score=372.97 Aligned_cols=260 Identities=28% Similarity=0.401 Sum_probs=209.5
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC------CCCEEEEEEecCCc-hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCce
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP------DGRNVAIKRLSGDC-GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDR 813 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 813 (1020)
.++|++.+.||+|+||.||+|++. +++.||||++.... ......+.+|+.++++++||||+++++++.+....
T Consensus 70 ~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~ 149 (367)
T 3l9p_A 70 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR 149 (367)
T ss_dssp GGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred HhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCC
Confidence 357899999999999999999853 46689999997553 34456788999999999999999999999999999
Q ss_pred EEEEEeccCCChhhhhhhcCC---CCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCC---CeEEe
Q 035998 814 LLIYSFMENGSLDYWLHEKLD---GPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNF---GAHLA 887 (1020)
Q Consensus 814 ~lv~e~~~~g~L~~~l~~~~~---~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~---~~kl~ 887 (1020)
++||||+++|+|.+++..... ....+++.+++.++.||+.||+|||++ +|+||||||+||+++.++ .+||+
T Consensus 150 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~~~~kL~ 226 (367)
T 3l9p_A 150 FILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAKIG 226 (367)
T ss_dssp EEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEEEC
T ss_pred EEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEEecCCCCceEEEC
Confidence 999999999999999987532 234689999999999999999999999 999999999999999555 59999
Q ss_pred eccccccccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHc-CCCCCCCCCCCCcccHHHHHHHHH
Q 035998 888 DFGLARLILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLT-GKRPMDMCKPKGSRDLISWVIRMR 966 (1020)
Q Consensus 888 Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-g~~pf~~~~~~~~~~~~~~~~~~~ 966 (1020)
|||+++...............||+.|+|||++.+..++.++|||||||++|||++ |..||..... ........
T Consensus 227 DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~------~~~~~~i~ 300 (367)
T 3l9p_A 227 DFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSN------QEVLEFVT 300 (367)
T ss_dssp CCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH------HHHHHHHH
T ss_pred CCccccccccccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCH------HHHHHHHH
Confidence 9999986543322333344667899999999988999999999999999999998 9999975322 11111221
Q ss_pred hhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 967 QENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 967 ~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
..... . .+......+.+++.+||+.||++||+++++++.|+.+
T Consensus 301 ~~~~~-~---------~~~~~~~~l~~li~~~l~~dP~~Rps~~eil~~l~~~ 343 (367)
T 3l9p_A 301 SGGRM-D---------PPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYC 343 (367)
T ss_dssp TTCCC-C---------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred cCCCC-C---------CCccCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence 11110 0 0111223588999999999999999999999999764
No 70
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=100.00 E-value=9.5e-40 Score=363.11 Aligned_cols=261 Identities=26% Similarity=0.417 Sum_probs=212.3
Q ss_pred ccCCCcCCeeeccCCeEEEEEEe------CCCCEEEEEEecCCc-hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCce
Q 035998 741 TNNFDQANIIGCGGFGLVYRATL------PDGRNVAIKRLSGDC-GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDR 813 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 813 (1020)
.++|.+.+.||+|+||.||+|+. .+++.||||++.... ....+.+.+|++++++++||||+++++++.+.+..
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~ 101 (314)
T 2ivs_A 22 RKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPL 101 (314)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSC
T ss_pred hhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCCce
Confidence 56789999999999999999975 245789999997654 33456789999999999999999999999999999
Q ss_pred EEEEEeccCCChhhhhhhcCC--------------------CCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCC
Q 035998 814 LLIYSFMENGSLDYWLHEKLD--------------------GPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKS 873 (1020)
Q Consensus 814 ~lv~e~~~~g~L~~~l~~~~~--------------------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp 873 (1020)
++||||+++++|.+++..... ....+++.+++.++.|++.||+|||++ +|+||||||
T Consensus 102 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dikp 178 (314)
T 2ivs_A 102 LLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEM---KLVHRDLAA 178 (314)
T ss_dssp EEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHT---TEECCCCSG
T ss_pred EEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHC---CCcccccch
Confidence 999999999999999987532 123488999999999999999999999 999999999
Q ss_pred CCEEEcCCCCeEEeeccccccccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHc-CCCCCCCCCC
Q 035998 874 SNILLDGNFGAHLADFGLARLILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLT-GKRPMDMCKP 952 (1020)
Q Consensus 874 ~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-g~~pf~~~~~ 952 (1020)
+||+++.++.+||+|||+++...............+++.|+|||++.+..++.++||||+|+++|||++ |+.||.....
T Consensus 179 ~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~ 258 (314)
T 2ivs_A 179 RNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPP 258 (314)
T ss_dssp GGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCG
T ss_pred heEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCCH
Confidence 999999999999999999987654333333344567889999999988899999999999999999999 9999975433
Q ss_pred CCcccHHHHHHHHHhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhcC
Q 035998 953 KGSRDLISWVIRMRQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSII 1020 (1020)
Q Consensus 953 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~il 1020 (1020)
.. .... ...... .. .+......+.+++.+||+.||++||+++|+++.|++++
T Consensus 259 ~~---~~~~---~~~~~~-~~---------~~~~~~~~~~~li~~~l~~dp~~Rps~~~l~~~l~~~~ 310 (314)
T 2ivs_A 259 ER---LFNL---LKTGHR-ME---------RPDNCSEEMYRLMLQCWKQEPDKRPVFADISKDLEKMM 310 (314)
T ss_dssp GG---HHHH---HHTTCC-CC---------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HH---HHHH---hhcCCc-CC---------CCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 21 1111 111110 00 01112246889999999999999999999999999863
No 71
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=100.00 E-value=9.3e-40 Score=368.08 Aligned_cols=264 Identities=28% Similarity=0.443 Sum_probs=212.9
Q ss_pred HHhccCCCcCCeeeccCCeEEEEEEeC------CCCEEEEEEecCCc-hhhHHHHHHHHHHHHHcCCCccceEeeEEecc
Q 035998 738 LESTNNFDQANIIGCGGFGLVYRATLP------DGRNVAIKRLSGDC-GQMEREFRAEVEALSRAQHPNLVHLQGYCMHK 810 (1020)
Q Consensus 738 ~~~~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~ 810 (1020)
....++|++.+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|++++++++||||+++++++.+.
T Consensus 43 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~ 122 (343)
T 1luf_A 43 EYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVG 122 (343)
T ss_dssp BCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSS
T ss_pred EecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccC
Confidence 345678999999999999999999864 34789999998654 33456789999999999999999999999999
Q ss_pred CceEEEEEeccCCChhhhhhhcCCC--------------------CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecC
Q 035998 811 NDRLLIYSFMENGSLDYWLHEKLDG--------------------PSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRD 870 (1020)
Q Consensus 811 ~~~~lv~e~~~~g~L~~~l~~~~~~--------------------~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~D 870 (1020)
+..++||||+++|+|.+++...... ...+++.+++.++.||++||+|||++ +|+|||
T Consensus 123 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~---~ivH~D 199 (343)
T 1luf_A 123 KPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER---KFVHRD 199 (343)
T ss_dssp SSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSC
T ss_pred CceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCC
Confidence 9999999999999999999864221 25789999999999999999999999 999999
Q ss_pred CCCCCEEEcCCCCeEEeeccccccccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHc-CCCCCCC
Q 035998 871 IKSSNILLDGNFGAHLADFGLARLILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLT-GKRPMDM 949 (1020)
Q Consensus 871 lkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-g~~pf~~ 949 (1020)
|||+||+++.++.+||+|||+++...............+++.|+|||++.+..++.++||||||+++|||++ |..||..
T Consensus 200 lkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~ 279 (343)
T 1luf_A 200 LATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYG 279 (343)
T ss_dssp CSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTT
T ss_pred CCcceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcCCC
Confidence 999999999999999999999987643322223344567889999999988899999999999999999999 9999974
Q ss_pred CCCCCcccHHHHHHHHHhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhcC
Q 035998 950 CKPKGSRDLISWVIRMRQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSII 1020 (1020)
Q Consensus 950 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~il 1020 (1020)
... .......... ..... +......+.+++.+||+.||++||+++++++.|+++.
T Consensus 280 ~~~------~~~~~~~~~~-~~~~~---------~~~~~~~l~~li~~~l~~~p~~Rps~~~~~~~L~~~~ 334 (343)
T 1luf_A 280 MAH------EEVIYYVRDG-NILAC---------PENCPLELYNLMRLCWSKLPADRPSFCSIHRILQRMC 334 (343)
T ss_dssp SCH------HHHHHHHHTT-CCCCC---------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTT
T ss_pred CCh------HHHHHHHhCC-CcCCC---------CCCCCHHHHHHHHHHcccCcccCCCHHHHHHHHHHHH
Confidence 321 1111112111 11110 1112236889999999999999999999999999863
No 72
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=100.00 E-value=5.7e-40 Score=366.42 Aligned_cols=263 Identities=27% Similarity=0.432 Sum_probs=195.4
Q ss_pred HhccCCCcCCeeeccCCeEEEEEEeCCC----CEEEEEEecCCc--hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCc
Q 035998 739 ESTNNFDQANIIGCGGFGLVYRATLPDG----RNVAIKRLSGDC--GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKND 812 (1020)
Q Consensus 739 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~----~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 812 (1020)
...++|++.+.||+|+||.||+|+.... ..||||++.... ....+.+.+|++++++++||||+++++++.....
T Consensus 20 i~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 99 (323)
T 3qup_A 20 IPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRA 99 (323)
T ss_dssp CC---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC--
T ss_pred cChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeecccc
Confidence 3457899999999999999999986533 279999987652 3345678999999999999999999999987765
Q ss_pred e------EEEEEeccCCChhhhhhhcC--CCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCe
Q 035998 813 R------LLIYSFMENGSLDYWLHEKL--DGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGA 884 (1020)
Q Consensus 813 ~------~lv~e~~~~g~L~~~l~~~~--~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 884 (1020)
. ++||||+++|+|.+++.... .....+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+
T Consensus 100 ~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~ivH~Dikp~NIli~~~~~~ 176 (323)
T 3qup_A 100 KGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSR---NFIHRDLAARNCMLAEDMTV 176 (323)
T ss_dssp -----CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCE
T ss_pred ccCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcC---CcccCCCCcceEEEcCCCCE
Confidence 5 89999999999999997543 2233689999999999999999999999 99999999999999999999
Q ss_pred EEeeccccccccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHc-CCCCCCCCCCCCcccHHHHHH
Q 035998 885 HLADFGLARLILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLT-GKRPMDMCKPKGSRDLISWVI 963 (1020)
Q Consensus 885 kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-g~~pf~~~~~~~~~~~~~~~~ 963 (1020)
||+|||+++...............+++.|+|||.+.+..++.++||||+|+++|||++ |+.||......+ ....
T Consensus 177 kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~---~~~~-- 251 (323)
T 3qup_A 177 CVADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENAE---IYNY-- 251 (323)
T ss_dssp EECCCCC-----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGG---HHHH--
T ss_pred EEeeccccccccccccccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccChHH---HHHH--
Confidence 9999999987654333333334566789999999999999999999999999999999 999997543322 1111
Q ss_pred HHHhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhcC
Q 035998 964 RMRQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSII 1020 (1020)
Q Consensus 964 ~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~il 1020 (1020)
....... . .+......+.+++.+||+.||++|||++++++.|++++
T Consensus 252 -~~~~~~~-~---------~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l 297 (323)
T 3qup_A 252 -LIGGNRL-K---------QPPECMEEVYDLMYQCWSADPKQRPSFTCLRMELENIL 297 (323)
T ss_dssp -HHTTCCC-C---------CCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred -HhcCCCC-C---------CCCccCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 1111110 0 01112246889999999999999999999999999863
No 73
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=100.00 E-value=7.8e-39 Score=353.41 Aligned_cols=262 Identities=27% Similarity=0.371 Sum_probs=204.5
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeCCCCEEEEEEecCCchhhHHHHHHHHHHHHH--cCCCccceEeeEEecc----CceE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLPDGRNVAIKRLSGDCGQMEREFRAEVEALSR--AQHPNLVHLQGYCMHK----NDRL 814 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~l~~~~~~~----~~~~ 814 (1020)
.++|++.+.||+|+||.||+|++ +++.||||++... ....+.+|.+++.. ++||||+++++++.+. ...+
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~ 82 (301)
T 3q4u_A 7 ARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSR---DEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLW 82 (301)
T ss_dssp GGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEE
T ss_pred cCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEeccc---cchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeE
Confidence 46799999999999999999998 6899999998754 34556677777777 7999999999987653 4578
Q ss_pred EEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhH--------hcCCCCeEecCCCCCCEEEcCCCCeEE
Q 035998 815 LIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLH--------QSCEPHILHRDIKSSNILLDGNFGAHL 886 (1020)
Q Consensus 815 lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH--------~~~~~~ivH~Dlkp~NIll~~~~~~kl 886 (1020)
+||||+++|+|.++++. ..+++..++.++.|++.||+||| +. +|+||||||+||+++.++.+||
T Consensus 83 lv~e~~~~g~L~~~l~~-----~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~Nill~~~~~~kl 154 (301)
T 3q4u_A 83 LITHYHEMGSLYDYLQL-----TTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKP---AIAHRDLKSKNILVKKNGQCCI 154 (301)
T ss_dssp EEECCCTTCBHHHHHTT-----CCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBC---EEECSCCCGGGEEECTTSCEEE
T ss_pred EehhhccCCCHHHHHhh-----cccCHHHHHHHHHHHHHHHHHHHHhhhhccCCC---CeecCCCChHhEEEcCCCCEEE
Confidence 99999999999999964 36899999999999999999999 77 9999999999999999999999
Q ss_pred eeccccccccCCCCcc--cccccccccCccCccccCCC------CCCchhhHHHHHHHHHHHHcC----------CCCCC
Q 035998 887 ADFGLARLILSPYDTH--VTTDLVGTLGYIPPEYGQAS------VATYKGDVYSFGVVLLELLTG----------KRPMD 948 (1020)
Q Consensus 887 ~Dfg~~~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~------~~~~~~DvwSlGvil~elltg----------~~pf~ 948 (1020)
+|||+++......... ......||+.|+|||++.+. .++.++||||+|+++|||++| +.||.
T Consensus 155 ~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~ 234 (301)
T 3q4u_A 155 ADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFY 234 (301)
T ss_dssp CCCTTCEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTT
T ss_pred eeCCCeeecccccccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCcccccccccccc
Confidence 9999998765432221 12335789999999998776 455799999999999999999 88886
Q ss_pred CCCCCCcccHHHHHHHHHhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 949 MCKPKGSRDLISWVIRMRQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 949 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
........ ................. ............+.+++.+||+.||++|||++|+++.|+++
T Consensus 235 ~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i 300 (301)
T 3q4u_A 235 DVVPNDPS-FEDMRKVVCVDQQRPNI----PNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKI 300 (301)
T ss_dssp TTSCSSCC-HHHHHHHHTTSCCCCCC----CGGGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred ccCCCCcc-hhhhhHHHhccCCCCCC----ChhhccCccHHHHHHHHHHHhhcChhhCCCHHHHHHHHhcc
Confidence 54433221 11111111111111111 11112334567899999999999999999999999999875
No 74
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=100.00 E-value=8.4e-40 Score=371.36 Aligned_cols=257 Identities=27% Similarity=0.448 Sum_probs=197.7
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC----CCCEEEEEEecCCc-hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP----DGRNVAIKRLSGDC-GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLL 815 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~----~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 815 (1020)
.++|++.+.||+|+||.||+|+.. ++..||||+++... ....+.+.+|++++++++||||+++++++.+.+..++
T Consensus 44 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 123 (373)
T 2qol_A 44 ATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMI 123 (373)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEE
T ss_pred HhhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEE
Confidence 357999999999999999999864 57789999997653 3345679999999999999999999999999999999
Q ss_pred EEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccc
Q 035998 816 IYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLI 895 (1020)
Q Consensus 816 v~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~ 895 (1020)
||||+++|+|.+++... ...+++.+++.++.||+.||+|||+. +|+||||||+||+++.++.+||+|||+++..
T Consensus 124 v~e~~~~~sL~~~l~~~---~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~ 197 (373)
T 2qol_A 124 VTEYMENGSLDSFLRKH---DAQFTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLGRVL 197 (373)
T ss_dssp EEECCTTCBHHHHHHTT---TTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCC------
T ss_pred EEeCCCCCcHHHHHHhC---CCCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEEcCCCCEEECcCcccccc
Confidence 99999999999999754 34689999999999999999999999 9999999999999999999999999999876
Q ss_pred cCCCCc-ccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHc-CCCCCCCCCCCCcccHHHHHHHHHhhccccc
Q 035998 896 LSPYDT-HVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLT-GKRPMDMCKPKGSRDLISWVIRMRQENRESE 973 (1020)
Q Consensus 896 ~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 973 (1020)
...... .......+++.|+|||++.+..++.++||||||+++|||++ |+.||...... .. ...........
T Consensus 198 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~~---~~---~~~i~~~~~~~- 270 (373)
T 2qol_A 198 EDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQ---DV---IKAVDEGYRLP- 270 (373)
T ss_dssp ----------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCHH---HH---HHHHHTTEECC-
T ss_pred ccCCccceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCCHH---HH---HHHHHcCCCCC-
Confidence 433211 11222345778999999999999999999999999999998 99999653221 11 11111111100
Q ss_pred ccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 974 VLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 974 ~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
.+......+.+++.+||+.||++||+++++++.|+++
T Consensus 271 ---------~~~~~~~~l~~li~~cl~~dp~~RPs~~~i~~~L~~~ 307 (373)
T 2qol_A 271 ---------PPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKL 307 (373)
T ss_dssp ---------CCTTCBHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred ---------CCccccHHHHHHHHHHhCcChhhCcCHHHHHHHHHHH
Confidence 0112234688999999999999999999999999876
No 75
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=100.00 E-value=7.6e-39 Score=358.26 Aligned_cols=260 Identities=17% Similarity=0.218 Sum_probs=212.3
Q ss_pred ccCCCcCCeeeccCCeEEEEEEe-CCCCEEEEEEecCCchhhHHHHHHHHHHHHHc-CCCccceEeeEEeccCceEEEEE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATL-PDGRNVAIKRLSGDCGQMEREFRAEVEALSRA-QHPNLVHLQGYCMHKNDRLLIYS 818 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e 818 (1020)
.++|++.+.||+|+||.||+|+. .+++.||||++..... .+.+.+|+++++++ +||||+++++++...+..++|||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e 85 (330)
T 2izr_A 8 GPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR--APQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLE 85 (330)
T ss_dssp TTTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS--SCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEE
T ss_pred cCCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccc--hHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEE
Confidence 46799999999999999999986 4788999999875432 24578999999999 99999999999999999999999
Q ss_pred eccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCC-----eEEeeccccc
Q 035998 819 FMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFG-----AHLADFGLAR 893 (1020)
Q Consensus 819 ~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~-----~kl~Dfg~~~ 893 (1020)
|+ +++|.+++... ...+++..++.++.|++.||+|||+. +|+||||||+||+++.++. +||+|||+++
T Consensus 86 ~~-~~~L~~~~~~~---~~~~~~~~~~~i~~qi~~~l~~LH~~---~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~ 158 (330)
T 2izr_A 86 LL-GPSLEDLFDLC---DRTFSLKTVLMIAIQLISRMEYVHSK---NLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAK 158 (330)
T ss_dssp CC-CCBHHHHHHHT---TTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTCTTSEEECCCTTCE
T ss_pred eC-CCCHHHHHHHc---CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeeeccCCCCCCceEEEEEcccce
Confidence 99 99999999864 34789999999999999999999999 9999999999999998887 9999999998
Q ss_pred cccCCCCcc-----cccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhh
Q 035998 894 LILSPYDTH-----VTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQE 968 (1020)
Q Consensus 894 ~~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~ 968 (1020)
......... ......||+.|+|||++.+..++.++|||||||++|||++|+.||.....................
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~~ 238 (330)
T 2izr_A 159 EYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRA 238 (330)
T ss_dssp ESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSSHHHHHHHHHHHHHH
T ss_pred eeecCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccccccHHHHHHHHHhhhcc
Confidence 765433221 124568999999999999999999999999999999999999999876544433333333222222
Q ss_pred cccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 969 NRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 969 ~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
...... .... . .+.+++..||+.||.+||+++++++.|+++
T Consensus 239 ~~~~~~------~~~~---p-~~~~li~~~l~~~p~~RP~~~~l~~~l~~~ 279 (330)
T 2izr_A 239 TPIEVL------CENF---P-EMATYLRYVRRLDFFEKPDYDYLRKLFTDL 279 (330)
T ss_dssp SCHHHH------TTTC---H-HHHHHHHHHHHCCTTCCCCHHHHHHHHHHH
T ss_pred CCHHHH------hccC---h-HHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Confidence 111100 0011 1 688999999999999999999999999865
No 76
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=100.00 E-value=7.3e-39 Score=352.52 Aligned_cols=264 Identities=26% Similarity=0.402 Sum_probs=205.2
Q ss_pred ccCCCcCCeeeccCCeEEEEEEe-----CCCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCccceEeeEEec--cCce
Q 035998 741 TNNFDQANIIGCGGFGLVYRATL-----PDGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNLVHLQGYCMH--KNDR 813 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--~~~~ 813 (1020)
.++|++.+.||+|+||.||+|++ .+++.||||++........+.+.+|++++++++||||+++++++.. ....
T Consensus 9 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 88 (295)
T 3ugc_A 9 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL 88 (295)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTSC
T ss_pred HHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCce
Confidence 46789999999999999999984 2678999999987766666789999999999999999999999865 3568
Q ss_pred EEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccc
Q 035998 814 LLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLAR 893 (1020)
Q Consensus 814 ~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~ 893 (1020)
++||||+++|+|.+++... ...+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++
T Consensus 89 ~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~~~ 162 (295)
T 3ugc_A 89 KLIMEYLPYGSLRDYLQKH---KERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRVKIGDFGLTK 162 (295)
T ss_dssp EEEEECCTTCBHHHHHHHC---GGGCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCCSCC
T ss_pred EEEEEeCCCCCHHHHHHhc---ccccCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHhhEEEcCCCeEEEccCcccc
Confidence 9999999999999999764 23589999999999999999999999 99999999999999999999999999998
Q ss_pred cccCCCCc-ccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCC---------CCcccHHHHHH
Q 035998 894 LILSPYDT-HVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKP---------KGSRDLISWVI 963 (1020)
Q Consensus 894 ~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~---------~~~~~~~~~~~ 963 (1020)
........ .......++..|+|||.+.+..++.++||||+|+++|||++|..||..... ...........
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (295)
T 3ugc_A 163 VLPQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLI 242 (295)
T ss_dssp -------------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHHHHHHHHCTTCCTHHHHHHHH
T ss_pred cccCCcceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChHHHHhhhcCccccchhHHHHH
Confidence 76433221 222334567789999999999999999999999999999999999863210 00000000111
Q ss_pred HHHhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 964 RMRQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 964 ~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
......... ..+......+.+++.+||+.||++|||++|+++.|+++
T Consensus 243 ~~~~~~~~~---------~~~~~~~~~l~~li~~~l~~dp~~Rps~~el~~~L~~l 289 (295)
T 3ugc_A 243 ELLKNNGRL---------PRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQI 289 (295)
T ss_dssp HHHHTTCCC---------CCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHhccCcC---------CCCcCcCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHH
Confidence 111111100 01112234688999999999999999999999999876
No 77
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=100.00 E-value=7e-39 Score=352.09 Aligned_cols=260 Identities=24% Similarity=0.374 Sum_probs=205.8
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc---hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC---GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLI 816 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 816 (1020)
.++|++.+.||+|+||.||+|+.. +++.||+|++.... ....+.+.+|++++++++||||+++++++.+.+..++|
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv 89 (294)
T 4eqm_A 10 NERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLV 89 (294)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEE
T ss_pred hccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEE
Confidence 467999999999999999999864 68999999985432 33446789999999999999999999999999999999
Q ss_pred EEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeecccccccc
Q 035998 817 YSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLIL 896 (1020)
Q Consensus 817 ~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~ 896 (1020)
|||+++++|.+++... ..+++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++...
T Consensus 90 ~e~~~g~~L~~~l~~~----~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~ 162 (294)
T 4eqm_A 90 MEYIEGPTLSEYIESH----GPLSVDTAINFTNQILDGIKHAHDM---RIVHRDIKPQNILIDSNKTLKIFDFGIAKALS 162 (294)
T ss_dssp EECCCSCBHHHHHHHH----CSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCSSSTTC-
T ss_pred EeCCCCCCHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEEeCCCccccc
Confidence 9999999999999865 4689999999999999999999999 99999999999999999999999999998764
Q ss_pred CCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccccccC
Q 035998 897 SPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVLD 976 (1020)
Q Consensus 897 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 976 (1020)
... ........||+.|+|||++.+..++.++||||+|+++|||++|+.||..... ........... ...
T Consensus 163 ~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~------~~~~~~~~~~~-~~~--- 231 (294)
T 4eqm_A 163 ETS-LTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETA------VSIAIKHIQDS-VPN--- 231 (294)
T ss_dssp -------------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCH------HHHHHHHHSSC-CCC---
T ss_pred ccc-ccccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCh------HHHHHHHhhcc-CCC---
Confidence 321 1223345789999999999999999999999999999999999999975321 11111111111 000
Q ss_pred ccccCccCHHHHHHHHHHHhhccCCCCCCCC-CHHHHHHHHHhcC
Q 035998 977 PFIYDKQHDKEMLRVLDIACLCLSESPKVRP-TTQQLVSWLDSII 1020 (1020)
Q Consensus 977 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RP-s~~evl~~L~~il 1020 (1020)
............+.+++.+|++.||++|| +++++.+.|++++
T Consensus 232 --~~~~~~~~~~~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~ 274 (294)
T 4eqm_A 232 --VTTDVRKDIPQSLSNVILRATEKDKANRYKTIQEMKDDLSSVL 274 (294)
T ss_dssp --HHHHSCTTSCHHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTSS
T ss_pred --cchhcccCCCHHHHHHHHHHhcCCHhHccccHHHHHHHHHHHH
Confidence 00011112234688999999999999999 8999999998764
No 78
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Probab=100.00 E-value=1.5e-38 Score=355.03 Aligned_cols=248 Identities=23% Similarity=0.315 Sum_probs=204.3
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc---hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC---GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLI 816 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 816 (1020)
.++|++.+.||+|+||.||+|+.+ +|+.||+|++.... ......+.+|+++++.++||||+++++++.+.+..++|
T Consensus 4 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv 83 (337)
T 1o6l_A 4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFV 83 (337)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEE
T ss_pred hHHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEE
Confidence 357899999999999999999875 68999999997542 22345688999999999999999999999999999999
Q ss_pred EEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeecccccccc
Q 035998 817 YSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLIL 896 (1020)
Q Consensus 817 ~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~ 896 (1020)
|||+++|+|..++... ..+++..++.++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+++...
T Consensus 84 ~E~~~gg~L~~~l~~~----~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~ 156 (337)
T 1o6l_A 84 MEYANGGELFFHLSRE----RVFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCKEGI 156 (337)
T ss_dssp EECCTTCBHHHHHHHH----SCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCSC
T ss_pred EeCCCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCCHHHEEECCCCCEEEeeccchhhcc
Confidence 9999999999998764 4689999999999999999999999 99999999999999999999999999998643
Q ss_pred CCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccccccC
Q 035998 897 SPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVLD 976 (1020)
Q Consensus 897 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 976 (1020)
.. ........||+.|+|||++.+..++.++||||+||++|||++|+.||..... ......+..... . -
T Consensus 157 ~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~------~~~~~~i~~~~~--~--~ 224 (337)
T 1o6l_A 157 SD--GATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH------ERLFELILMEEI--R--F 224 (337)
T ss_dssp CT--TCCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSH------HHHHHHHHHCCC--C--C
T ss_pred cC--CCcccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCCH------HHHHHHHHcCCC--C--C
Confidence 22 2233456799999999999999999999999999999999999999964321 111111111110 0 0
Q ss_pred ccccCccCHHHHHHHHHHHhhccCCCCCCCC-----CHHHHHH
Q 035998 977 PFIYDKQHDKEMLRVLDIACLCLSESPKVRP-----TTQQLVS 1014 (1020)
Q Consensus 977 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RP-----s~~evl~ 1014 (1020)
| . .....+.+++.+||+.||++|| +++|+++
T Consensus 225 p---~----~~s~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~ 260 (337)
T 1o6l_A 225 P---R----TLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVME 260 (337)
T ss_dssp C---T----TSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred C---C----CCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHHc
Confidence 1 1 1123578999999999999999 8999876
No 79
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=100.00 E-value=1.5e-38 Score=350.54 Aligned_cols=261 Identities=16% Similarity=0.225 Sum_probs=212.7
Q ss_pred ccCCCcCCeeeccCCeEEEEEEe-CCCCEEEEEEecCCchhhHHHHHHHHHHHHHc-CCCccceEeeEEeccCceEEEEE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATL-PDGRNVAIKRLSGDCGQMEREFRAEVEALSRA-QHPNLVHLQGYCMHKNDRLLIYS 818 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e 818 (1020)
.++|++.+.||+|+||.||+|+. .+++.||||++..... .+.+.+|+++++++ +|+|++++++++.+....++|||
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e 86 (298)
T 1csn_A 9 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSD--APQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVID 86 (298)
T ss_dssp TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTT--SCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEE
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCCc--cHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEEE
Confidence 46799999999999999999985 5789999999865432 34578899999999 79999999999999999999999
Q ss_pred eccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCC-----eEEeeccccc
Q 035998 819 FMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFG-----AHLADFGLAR 893 (1020)
Q Consensus 819 ~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~-----~kl~Dfg~~~ 893 (1020)
|+ +++|.+++... ...+++..++.++.|++.||+|||++ +|+||||||+||+++.++. +||+|||+++
T Consensus 87 ~~-~~~L~~~l~~~---~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~ 159 (298)
T 1csn_A 87 LL-GPSLEDLLDLC---GRKFSVKTVAMAAKQMLARVQSIHEK---SLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVK 159 (298)
T ss_dssp CC-CCBHHHHHHHT---TTCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECCSSSTTTTCEEECCCTTCE
T ss_pred ec-CCCHHHHHHHh---ccCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEeccCCCCCCCeEEEEECcccc
Confidence 99 99999999864 24589999999999999999999999 9999999999999987776 9999999998
Q ss_pred cccCCCCc-----ccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhh
Q 035998 894 LILSPYDT-----HVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQE 968 (1020)
Q Consensus 894 ~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~ 968 (1020)
........ .......||+.|+|||++.+..++.++||||+|+++|||++|+.||.....................
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~ 239 (298)
T 1csn_A 160 FYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQS 239 (298)
T ss_dssp ESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHH
T ss_pred ccccccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHHHHHHHHhhccC
Confidence 77543221 1234567899999999999999999999999999999999999999875544433333322222221
Q ss_pred cccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 969 NRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 969 ~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
...... .. .....+.+++.+||+.||++||+++++++.|+++
T Consensus 240 ~~~~~~-----~~----~~~~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~ 281 (298)
T 1csn_A 240 TPLREL-----CA----GFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKV 281 (298)
T ss_dssp SCHHHH-----TT----TSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHH
T ss_pred ccHHHH-----Hh----hCcHHHHHHHHHHhcCCcccCCCHHHHHHHHHHH
Confidence 111111 01 1124688999999999999999999999999876
No 80
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=100.00 E-value=2.3e-38 Score=352.64 Aligned_cols=271 Identities=22% Similarity=0.230 Sum_probs=212.2
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc-hhhHHHHHHHHHHHHHcCCCccceEeeEEeccC--ceEEE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC-GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKN--DRLLI 816 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~--~~~lv 816 (1020)
.++|++.+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|++++++++||||+++++++.... ..++|
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv 87 (319)
T 4euu_A 8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLI 87 (319)
T ss_dssp SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEE
T ss_pred CCCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEE
Confidence 357899999999999999999875 58999999997543 233566789999999999999999999998765 67999
Q ss_pred EEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEE----cCCCCeEEeecccc
Q 035998 817 YSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILL----DGNFGAHLADFGLA 892 (1020)
Q Consensus 817 ~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll----~~~~~~kl~Dfg~~ 892 (1020)
|||+++++|.+++..... ...+++..++.++.|++.||+|||+. +|+||||||+||++ +.++.+||+|||++
T Consensus 88 ~e~~~~~~L~~~l~~~~~-~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a 163 (319)
T 4euu_A 88 MEFCPCGSLYTVLEEPSN-AYGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAA 163 (319)
T ss_dssp EECCTTCBHHHHHHSGGG-TTCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEECTTSCEEEEECCCTTC
T ss_pred EeCCCCCCHHHHHHHhcc-ccCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEEeccCCCCceEEEccCCCc
Confidence 999999999999986532 23489999999999999999999999 99999999999999 77888999999999
Q ss_pred ccccCCCCcccccccccccCccCccccC--------CCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcc-cHHHHHH
Q 035998 893 RLILSPYDTHVTTDLVGTLGYIPPEYGQ--------ASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSR-DLISWVI 963 (1020)
Q Consensus 893 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~--------~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~-~~~~~~~ 963 (1020)
+...... ......||+.|+|||++. +..++.++||||+||++|||++|+.||......... ..+....
T Consensus 164 ~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~ 240 (319)
T 4euu_A 164 RELEDDE---QFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKII 240 (319)
T ss_dssp EECCTTC---CBCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGGCHHHHHHHH
T ss_pred eecCCCC---ceeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccchhHHHHHHHh
Confidence 8764322 223457899999999875 578899999999999999999999999754433222 2222221
Q ss_pred HHHhhcccccccC-----------ccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHh
Q 035998 964 RMRQENRESEVLD-----------PFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDS 1018 (1020)
Q Consensus 964 ~~~~~~~~~~~~d-----------~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~ 1018 (1020)
............. ..............+.+++.+||+.||++|||++|+++..++
T Consensus 241 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~d 306 (319)
T 4euu_A 241 TGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSD 306 (319)
T ss_dssp HHCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHH
T ss_pred cCCCcccchhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccHH
Confidence 1111111110000 001112345667788999999999999999999999997765
No 81
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=100.00 E-value=2.7e-39 Score=364.46 Aligned_cols=251 Identities=24% Similarity=0.345 Sum_probs=205.5
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCchh------hHHHHHHHHHHHHHcCCCccceEeeEEeccCce
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCGQ------MEREFRAEVEALSRAQHPNLVHLQGYCMHKNDR 813 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~------~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 813 (1020)
.++|++.+.||+|+||.||+|+.+ +|+.||+|++...... ..+.+.+|++++++++||||+++++++.+....
T Consensus 11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~ 90 (361)
T 2yab_A 11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDV 90 (361)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEE
T ss_pred hhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEE
Confidence 467999999999999999999875 6899999999764321 346789999999999999999999999999999
Q ss_pred EEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCC----CeEEeec
Q 035998 814 LLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNF----GAHLADF 889 (1020)
Q Consensus 814 ~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~----~~kl~Df 889 (1020)
++||||+++|+|.+++... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++ .+||+||
T Consensus 91 ~lv~e~~~gg~L~~~l~~~----~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~~~~vkl~DF 163 (361)
T 2yab_A 91 VLILELVSGGELFDFLAQK----ESLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDKNIPIPHIKLIDF 163 (361)
T ss_dssp EEEEECCCSCBHHHHHTTC----SCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCTTSSSCCEEECCC
T ss_pred EEEEEcCCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEeCCCCCccCEEEEec
Confidence 9999999999999998753 4689999999999999999999999 999999999999998776 7999999
Q ss_pred cccccccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhc
Q 035998 890 GLARLILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQEN 969 (1020)
Q Consensus 890 g~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~ 969 (1020)
|+++..... .......||+.|+|||++.+..++.++||||+||++|+|++|..||...... . ....+....
T Consensus 164 G~a~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~~---~---~~~~i~~~~ 234 (361)
T 2yab_A 164 GLAHEIEDG---VEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQ---E---TLANITAVS 234 (361)
T ss_dssp SSCEECCTT---CCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHH---H---HHHHHHTTC
T ss_pred CCceEcCCC---CccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCHH---H---HHHHHHhcC
Confidence 999876432 2234467999999999999999999999999999999999999999753211 1 111111111
Q ss_pred ccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 970 RESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 970 ~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
...++...... ...+.+++.+||+.||++|||++|+++
T Consensus 235 ---~~~~~~~~~~~----s~~~~~li~~~L~~dP~~R~t~~e~l~ 272 (361)
T 2yab_A 235 ---YDFDEEFFSQT----SELAKDFIRKLLVKETRKRLTIQEALR 272 (361)
T ss_dssp ---CCCCHHHHTTS----CHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred ---CCCCchhccCC----CHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 00111111111 235789999999999999999999986
No 82
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=100.00 E-value=2e-39 Score=362.32 Aligned_cols=255 Identities=25% Similarity=0.407 Sum_probs=200.2
Q ss_pred cCCCcCCeeeccCCeEEEEEEeC-CCC----EEEEEEecCCc-hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEE
Q 035998 742 NNFDQANIIGCGGFGLVYRATLP-DGR----NVAIKRLSGDC-GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLL 815 (1020)
Q Consensus 742 ~~~~~~~~lg~G~~g~V~~~~~~-~~~----~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 815 (1020)
++|++.+.||+|+||.||+|++. +++ +||+|.+.... ....+.+.+|++++++++||||+++++++.+. ..++
T Consensus 15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-~~~~ 93 (327)
T 3poz_A 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-TVQL 93 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESS-SEEE
T ss_pred HHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecC-CeEE
Confidence 56899999999999999999864 444 36888876443 23456799999999999999999999999875 4789
Q ss_pred EEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccc
Q 035998 816 IYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLI 895 (1020)
Q Consensus 816 v~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~ 895 (1020)
|+||+.+|+|.+++... ...+++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++..
T Consensus 94 v~e~~~~g~L~~~l~~~---~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~ 167 (327)
T 3poz_A 94 ITQLMPFGCLLDYVREH---KDNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLL 167 (327)
T ss_dssp EEECCTTCBHHHHHHHS---TTSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECCTTHHHHH
T ss_pred EEEecCCCcHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCChheEEECCCCCEEEccCcceeEc
Confidence 99999999999999864 34689999999999999999999999 9999999999999999999999999999887
Q ss_pred cCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHc-CCCCCCCCCCCCcccHHHHHHHHHhhcccccc
Q 035998 896 LSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLT-GKRPMDMCKPKGSRDLISWVIRMRQENRESEV 974 (1020)
Q Consensus 896 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 974 (1020)
.............+|+.|+|||++.+..++.++|||||||++|||++ |+.||........ ... ........
T Consensus 168 ~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~---~~~---~~~~~~~~-- 239 (327)
T 3poz_A 168 GAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEI---SSI---LEKGERLP-- 239 (327)
T ss_dssp TTTCC-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGH---HHH---HHTTCCCC--
T ss_pred cCCcccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCHHHH---HHH---HHcCCCCC--
Confidence 55443333444567889999999999999999999999999999999 9999975433221 111 11111100
Q ss_pred cCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 975 LDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 975 ~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
.+......+.+++.+||+.||++||+++|+++.|+++
T Consensus 240 --------~~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~l~~~ 276 (327)
T 3poz_A 240 --------QPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKM 276 (327)
T ss_dssp --------CCTTBCHHHHHHHHHHTCSCGGGSCCHHHHHHHHHHH
T ss_pred --------CCccCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHH
Confidence 0111224688999999999999999999999999865
No 83
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=100.00 E-value=1.4e-39 Score=355.94 Aligned_cols=256 Identities=26% Similarity=0.411 Sum_probs=207.5
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeCCCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEEEec
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLPDGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIYSFM 820 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 820 (1020)
.++|++.+.||+|+||.||+|++.++..||||++..... ..+++.+|++++++++||||+++++++.+.+..++||||+
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 101 (283)
T 3gen_A 23 PKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYM 101 (283)
T ss_dssp GGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEECCC
T ss_pred HHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCC-CHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEecc
Confidence 467899999999999999999998888999999986543 3467899999999999999999999999999999999999
Q ss_pred cCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccCCCC
Q 035998 821 ENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILSPYD 900 (1020)
Q Consensus 821 ~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~ 900 (1020)
++++|.+++... ...+++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++......
T Consensus 102 ~~~~L~~~l~~~---~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~- 174 (283)
T 3gen_A 102 ANGCLLNYLREM---RHRFQTQQLLEMCKDVCEAMEYLESK---QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDE- 174 (283)
T ss_dssp TTCBHHHHHHCG---GGCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHH-
T ss_pred CCCcHHHHHHHh---ccCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCccceEEEcCCCCEEEccccccccccccc-
Confidence 999999999763 23589999999999999999999999 99999999999999999999999999998763321
Q ss_pred cccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHc-CCCCCCCCCCCCcccHHHHHHHHHhhcccccccCccc
Q 035998 901 THVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLT-GKRPMDMCKPKGSRDLISWVIRMRQENRESEVLDPFI 979 (1020)
Q Consensus 901 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 979 (1020)
........+|+.|+|||++.+..++.++||||+|+++|||++ |+.||...... ........... ...+
T Consensus 175 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~------~~~~~~~~~~~---~~~~-- 243 (283)
T 3gen_A 175 YTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNS------ETAEHIAQGLR---LYRP-- 243 (283)
T ss_dssp HHSTTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHH------HHHHHHHTTCC---CCCC--
T ss_pred cccccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccChh------HHHHHHhcccC---CCCC--
Confidence 112223456778999999988899999999999999999998 99999754321 11111211111 0011
Q ss_pred cCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhcC
Q 035998 980 YDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSII 1020 (1020)
Q Consensus 980 ~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~il 1020 (1020)
. .....+.+++.+||+.||++|||++++++.|++++
T Consensus 244 -~----~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~~~ 279 (283)
T 3gen_A 244 -H----LASEKVYTIMYSCWHEKADERPTFKILLSNILDVM 279 (283)
T ss_dssp -T----TCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred -C----cCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHh
Confidence 0 11235889999999999999999999999998763
No 84
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=100.00 E-value=6.2e-39 Score=357.16 Aligned_cols=253 Identities=25% Similarity=0.343 Sum_probs=203.1
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCch-hhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEEE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCG-QMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIYS 818 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 818 (1020)
.++|++.+.||+|+||.||+|+.. +++.||||++..... ...+.+.+|+.+++.++||||+++++++.+.+..++|||
T Consensus 6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e 85 (323)
T 3tki_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE 85 (323)
T ss_dssp TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEE
Confidence 368999999999999999999875 789999999865432 234568899999999999999999999999999999999
Q ss_pred eccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccCC
Q 035998 819 FMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILSP 898 (1020)
Q Consensus 819 ~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~ 898 (1020)
|+++|+|.+++... ..+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++.....
T Consensus 86 ~~~~~~L~~~l~~~----~~~~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~ 158 (323)
T 3tki_A 86 YCSGGELFDRIEPD----IGMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGLATVFRYN 158 (323)
T ss_dssp CCTTEEGGGGSBTT----TBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEECEET
T ss_pred cCCCCcHHHHHhhc----CCCCHHHHHHHHHHHHHHHHHHHHC---CccccccchHHEEEeCCCCEEEEEeeccceeccC
Confidence 99999999888653 4689999999999999999999999 9999999999999999999999999999876433
Q ss_pred CCcccccccccccCccCccccCCCCC-CchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccccccCc
Q 035998 899 YDTHVTTDLVGTLGYIPPEYGQASVA-TYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVLDP 977 (1020)
Q Consensus 899 ~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 977 (1020)
..........||+.|+|||++.+..+ +.++||||+||++|||++|+.||........ .... ...... ...+
T Consensus 159 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~-~~~~----~~~~~~---~~~~ 230 (323)
T 3tki_A 159 NRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQ-EYSD----WKEKKT---YLNP 230 (323)
T ss_dssp TEECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSH-HHHH----HHTTCT---TSTT
T ss_pred CcccccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHH-HHHH----Hhcccc---cCCc
Confidence 33333445689999999999877665 7899999999999999999999975433211 1111 111110 0011
Q ss_pred cccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 978 FIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 978 ~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
. ......+.+++.+||+.||++|||++|+++
T Consensus 231 --~----~~~~~~~~~li~~~L~~dP~~R~t~~eil~ 261 (323)
T 3tki_A 231 --W----KKIDSAPLALLHKILVENPSARITIPDIKK 261 (323)
T ss_dssp --G----GGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred --c----ccCCHHHHHHHHHHccCChhhCcCHHHHhh
Confidence 0 111235789999999999999999999976
No 85
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=3.4e-39 Score=358.77 Aligned_cols=251 Identities=20% Similarity=0.292 Sum_probs=205.5
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEEEe
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIYSF 819 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 819 (1020)
.++|++.+.||+|+||.||+|... +++.||+|.+.... .....+.+|+++++.++||||+++++++.+.+..++||||
T Consensus 4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~-~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~ 82 (321)
T 1tki_A 4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG-TDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEF 82 (321)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT-HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECC
T ss_pred hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCc-ccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEEe
Confidence 468999999999999999999875 57889999987553 3355688999999999999999999999999999999999
Q ss_pred ccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcC--CCCeEEeeccccccccC
Q 035998 820 MENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDG--NFGAHLADFGLARLILS 897 (1020)
Q Consensus 820 ~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~--~~~~kl~Dfg~~~~~~~ 897 (1020)
+++|+|.+++... ...+++.+++.++.|++.||+|||++ +|+||||||+||+++. ++.+||+|||+++....
T Consensus 83 ~~g~~L~~~l~~~---~~~~~~~~~~~i~~qi~~al~~lH~~---givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~ 156 (321)
T 1tki_A 83 ISGLDIFERINTS---AFELNEREIVSYVHQVCEALQFLHSH---NIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKP 156 (321)
T ss_dssp CCCCBHHHHHTSS---SCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCTTCEECCT
T ss_pred CCCCCHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEccCCCCCEEEEECCCCeECCC
Confidence 9999999998653 34689999999999999999999999 9999999999999987 78999999999987643
Q ss_pred CCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccccccCc
Q 035998 898 PYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVLDP 977 (1020)
Q Consensus 898 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 977 (1020)
. .......||+.|+|||++.+..++.++||||+||++|+|++|..||...... .. ...+..... ..++
T Consensus 157 ~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~---~~---~~~i~~~~~---~~~~ 224 (321)
T 1tki_A 157 G---DNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQ---QI---IENIMNAEY---TFDE 224 (321)
T ss_dssp T---CEEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHH---HH---HHHHHHTCC---CCCH
T ss_pred C---CccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCHH---HH---HHHHHcCCC---CCCh
Confidence 2 2234467899999999999988999999999999999999999999753221 11 111111111 0111
Q ss_pred cccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 978 FIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 978 ~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
..... ....+.+++.+||+.||.+|||++|+++
T Consensus 225 ~~~~~----~s~~~~~li~~~L~~dp~~Rpt~~e~l~ 257 (321)
T 1tki_A 225 EAFKE----ISIEAMDFVDRLLVKERKSRMTASEALQ 257 (321)
T ss_dssp HHHTT----SCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred hhhcc----CCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 11111 1235789999999999999999999987
No 86
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=100.00 E-value=6.5e-39 Score=373.66 Aligned_cols=251 Identities=27% Similarity=0.424 Sum_probs=206.7
Q ss_pred hccCCCcCCeeeccCCeEEEEEEeCCCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCccceEeeEEeccC-ceEEEEE
Q 035998 740 STNNFDQANIIGCGGFGLVYRATLPDGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNLVHLQGYCMHKN-DRLLIYS 818 (1020)
Q Consensus 740 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~-~~~lv~e 818 (1020)
..++|++.+.||+|+||.||+|.+. ++.||||+++... ..+.+.+|++++++++||||+++++++.+.+ ..++|||
T Consensus 191 ~~~~~~~~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~e 267 (450)
T 1k9a_A 191 NMKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTE 267 (450)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEET-TEEEEEEEESSCT--TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEEE
T ss_pred ChHHeEEEeeecCcCCeeEEEEEec-CCeEEEEEeCCch--HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEEE
Confidence 3467889999999999999999985 7899999998654 3467899999999999999999999987765 7899999
Q ss_pred eccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccCC
Q 035998 819 FMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILSP 898 (1020)
Q Consensus 819 ~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~ 898 (1020)
|+++|+|.+++... ....+++..++.++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+++.....
T Consensus 268 ~~~~g~L~~~l~~~--~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~ 342 (450)
T 1k9a_A 268 YMAKGSLVDYLRSR--GRSVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST 342 (450)
T ss_dssp CCTTCBHHHHHHHH--CTTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTSCEEECCCTTCEECC--
T ss_pred ecCCCcHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEECCCCCEEEeeCCCccccccc
Confidence 99999999999865 223478999999999999999999999 9999999999999999999999999999864221
Q ss_pred CCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHc-CCCCCCCCCCCCcccHHHHHHHHHhhcccccccCc
Q 035998 899 YDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLT-GKRPMDMCKPKGSRDLISWVIRMRQENRESEVLDP 977 (1020)
Q Consensus 899 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 977 (1020)
.....+++.|+|||++.+..++.++||||||+++|||++ |+.||......+. .. ........ .
T Consensus 343 -----~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~---~~---~i~~~~~~-~---- 406 (450)
T 1k9a_A 343 -----QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDV---VP---RVEKGYKM-D---- 406 (450)
T ss_dssp ---------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTTTH---HH---HHHTTCCC-C----
T ss_pred -----ccCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHH---HH---HHHcCCCC-C----
Confidence 122356889999999999999999999999999999999 9999986544332 11 11111110 0
Q ss_pred cccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 978 FIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 978 ~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
.+......+.+++.+||+.||++|||++++++.|+++
T Consensus 407 -----~p~~~~~~l~~li~~cl~~dp~~Rpt~~~l~~~L~~i 443 (450)
T 1k9a_A 407 -----APDGCPPAVYDVMKNCWHLDAATRPTFLQLREQLEHI 443 (450)
T ss_dssp -----CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred -----CCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence 1112234688999999999999999999999999875
No 87
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=100.00 E-value=4.4e-39 Score=370.71 Aligned_cols=263 Identities=22% Similarity=0.243 Sum_probs=208.5
Q ss_pred cHHHHHHhccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCchh---hHHHHHHHHHHHHHcCCCccceEeeEEe
Q 035998 733 SIDDILESTNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCGQ---MEREFRAEVEALSRAQHPNLVHLQGYCM 808 (1020)
Q Consensus 733 ~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~---~~~~~~~E~~~l~~l~h~niv~l~~~~~ 808 (1020)
.+.++....++|++.++||+|+||+||+|+.+ +++.||||++.+.... ....+.+|+.++..++||||++++++|.
T Consensus 65 ~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~ 144 (437)
T 4aw2_A 65 KVKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQ 144 (437)
T ss_dssp HHHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEE
T ss_pred hhhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEe
Confidence 34555667789999999999999999999976 4788999999753211 1223788999999999999999999999
Q ss_pred ccCceEEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEee
Q 035998 809 HKNDRLLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLAD 888 (1020)
Q Consensus 809 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~D 888 (1020)
+.+..++||||+++|+|.+++... ...+++..++.++.||+.||+|||+. +||||||||+|||++.++.+||+|
T Consensus 145 ~~~~~~lV~Ey~~gg~L~~~l~~~---~~~l~e~~~~~~~~qi~~aL~~LH~~---giiHrDLKp~NILl~~~g~vkL~D 218 (437)
T 4aw2_A 145 DDNNLYLVMDYYVGGDLLTLLSKF---EDRLPEEMARFYLAEMVIAIDSVHQL---HYVHRDIKPDNILMDMNGHIRLAD 218 (437)
T ss_dssp CSSEEEEEECCCTTCBHHHHHHTT---TTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECC
T ss_pred eCCEEEEEEecCCCCcHHHHHHHc---cCCCCHHHHHHHHHHHHHHHHHHHhC---CeEecccCHHHeeEcCCCCEEEcc
Confidence 999999999999999999999763 24689999999999999999999999 999999999999999999999999
Q ss_pred ccccccccCCCCcccccccccccCccCccccC-----CCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHH
Q 035998 889 FGLARLILSPYDTHVTTDLVGTLGYIPPEYGQ-----ASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVI 963 (1020)
Q Consensus 889 fg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~ 963 (1020)
||+++...... .......+||+.|+|||++. .+.++.++||||+||++|||++|+.||...... +......
T Consensus 219 FGla~~~~~~~-~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~~~---~~~~~i~ 294 (437)
T 4aw2_A 219 FGSCLKLMEDG-TVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLV---ETYGKIM 294 (437)
T ss_dssp CTTCEECCTTS-CEECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSSHH---HHHHHHH
T ss_pred hhhhhhcccCC-CcccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCChh---HHHHhhh
Confidence 99998764322 22334468999999999876 567899999999999999999999999753221 1111111
Q ss_pred HHHhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCC--CCCHHHHHH
Q 035998 964 RMRQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKV--RPTTQQLVS 1014 (1020)
Q Consensus 964 ~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~--RPs~~evl~ 1014 (1020)
........+. .... ....+.+++.+|++.+|++ ||+++|+++
T Consensus 295 ~~~~~~~~p~-----~~~~----~s~~~~dLi~~lL~~~~~r~~r~~~~eil~ 338 (437)
T 4aw2_A 295 NHKERFQFPT-----QVTD----VSENAKDLIRRLICSREHRLGQNGIEDFKK 338 (437)
T ss_dssp THHHHCCCCS-----SCCC----SCHHHHHHHHTTSSCGGGCTTTTTTHHHHT
T ss_pred hccccccCCc-----cccc----CCHHHHHHHHHHhcccccccCCCCHHHHhC
Confidence 1111111111 0011 1235789999999998888 999999986
No 88
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=100.00 E-value=1.8e-38 Score=352.65 Aligned_cols=261 Identities=28% Similarity=0.422 Sum_probs=212.4
Q ss_pred ccCCCcCCeeeccCCeEEEEEEe------CCCCEEEEEEecCCch-hhHHHHHHHHHHHHHc-CCCccceEeeEEeccCc
Q 035998 741 TNNFDQANIIGCGGFGLVYRATL------PDGRNVAIKRLSGDCG-QMEREFRAEVEALSRA-QHPNLVHLQGYCMHKND 812 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~------~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~ 812 (1020)
.++|++.+.||+|+||.||+|++ .+++.||||++..... ...+.+.+|+++++++ +||||+++++++.+.+.
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~ 101 (313)
T 1t46_A 22 RNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGP 101 (313)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred hhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCCC
Confidence 46789999999999999999984 3567899999986543 3356789999999999 99999999999999999
Q ss_pred eEEEEEeccCCChhhhhhhcCC--------------CCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEE
Q 035998 813 RLLIYSFMENGSLDYWLHEKLD--------------GPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILL 878 (1020)
Q Consensus 813 ~~lv~e~~~~g~L~~~l~~~~~--------------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll 878 (1020)
.++||||+++|+|.+++..... ....+++..++.++.|++.||+|||++ +|+||||||+||++
T Consensus 102 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~ 178 (313)
T 1t46_A 102 TLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASK---NCIHRDLAARNILL 178 (313)
T ss_dssp CEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEE
T ss_pred cEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCccceEEE
Confidence 9999999999999999986532 123589999999999999999999999 99999999999999
Q ss_pred cCCCCeEEeeccccccccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHc-CCCCCCCCCCCCccc
Q 035998 879 DGNFGAHLADFGLARLILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLT-GKRPMDMCKPKGSRD 957 (1020)
Q Consensus 879 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-g~~pf~~~~~~~~~~ 957 (1020)
+.++.+||+|||+++...............+++.|+|||++.+..++.++||||+|+++|||++ |+.||....... .
T Consensus 179 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~--~ 256 (313)
T 1t46_A 179 THGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDS--K 256 (313)
T ss_dssp ETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSH--H
T ss_pred cCCCCEEEccccccccccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccchh--H
Confidence 9999999999999987755433333445567889999999988999999999999999999999 999997543221 1
Q ss_pred HHHHHHHHHhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 958 LISWVIRMRQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 958 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
... ....... .. . +......+.+++.+||+.||.+|||++|+++.|+++
T Consensus 257 ~~~---~~~~~~~-~~--~-------~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~ 305 (313)
T 1t46_A 257 FYK---MIKEGFR-ML--S-------PEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQ 305 (313)
T ss_dssp HHH---HHHHTCC-CC--C-------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHH---HhccCCC-CC--C-------cccCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHH
Confidence 111 1111110 00 0 011124688999999999999999999999999876
No 89
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=100.00 E-value=6.1e-39 Score=359.72 Aligned_cols=260 Identities=27% Similarity=0.401 Sum_probs=210.0
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC--------CCCEEEEEEecCCc-hhhHHHHHHHHHHHHHc-CCCccceEeeEEecc
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP--------DGRNVAIKRLSGDC-GQMEREFRAEVEALSRA-QHPNLVHLQGYCMHK 810 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~--------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~ 810 (1020)
.++|++.+.||+|+||.||+|+.. ++..||||++.... ....+.+.+|+++++++ +||||+++++++.+.
T Consensus 34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~ 113 (334)
T 2pvf_A 34 RDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD 113 (334)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred HhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEccC
Confidence 467999999999999999999863 46789999997654 23456788999999999 899999999999999
Q ss_pred CceEEEEEeccCCChhhhhhhcCCC------------CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEE
Q 035998 811 NDRLLIYSFMENGSLDYWLHEKLDG------------PSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILL 878 (1020)
Q Consensus 811 ~~~~lv~e~~~~g~L~~~l~~~~~~------------~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll 878 (1020)
+..++||||+++|+|.+++...... ...+++..++.++.|++.||+|||+. +|+||||||+||++
T Consensus 114 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll 190 (334)
T 2pvf_A 114 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVLV 190 (334)
T ss_dssp SCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEE
T ss_pred CceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCccceEEE
Confidence 9999999999999999999865321 23489999999999999999999999 99999999999999
Q ss_pred cCCCCeEEeeccccccccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHc-CCCCCCCCCCCCccc
Q 035998 879 DGNFGAHLADFGLARLILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLT-GKRPMDMCKPKGSRD 957 (1020)
Q Consensus 879 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-g~~pf~~~~~~~~~~ 957 (1020)
+.++.+||+|||+++...............+++.|+|||++.+..++.++||||+|+++|||++ |..||..... ..
T Consensus 191 ~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~---~~ 267 (334)
T 2pvf_A 191 TENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPV---EE 267 (334)
T ss_dssp CTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCH---HH
T ss_pred cCCCCEEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCCH---HH
Confidence 9999999999999987654333233344567889999999988889999999999999999999 9999975321 11
Q ss_pred HHHHHHHHHhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 958 LISWVIRMRQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 958 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
.. ........ .. .+......+.+++.+||+.||.+||+++|+++.|+++
T Consensus 268 ~~---~~~~~~~~-~~---------~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~l 316 (334)
T 2pvf_A 268 LF---KLLKEGHR-MD---------KPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRI 316 (334)
T ss_dssp HH---HHHHHTCC-CC---------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HH---HHHhcCCC-CC---------CCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 11 11111111 00 0111224688999999999999999999999999876
No 90
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=100.00 E-value=2.2e-38 Score=360.02 Aligned_cols=255 Identities=22% Similarity=0.387 Sum_probs=202.4
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCch---hhHHHHHHHHHHHHHc-CCCccceEeeEEeccCceEE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCG---QMEREFRAEVEALSRA-QHPNLVHLQGYCMHKNDRLL 815 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l 815 (1020)
.++|++.++||+|+||.||+|+.+ +++.||||++++... ...+.+.+|..++.++ +||||+++++++.+.+..++
T Consensus 51 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l 130 (396)
T 4dc2_A 51 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF 130 (396)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred hhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEE
Confidence 457999999999999999999875 578899999976432 2223577899999887 89999999999999999999
Q ss_pred EEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccc
Q 035998 816 IYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLI 895 (1020)
Q Consensus 816 v~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~ 895 (1020)
||||+++|+|..++... ..+++..++.++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+++..
T Consensus 131 V~E~~~gg~L~~~l~~~----~~l~~~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl~~~g~ikL~DFGla~~~ 203 (396)
T 4dc2_A 131 VIEYVNGGDLMFHMQRQ----RKLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEG 203 (396)
T ss_dssp EEECCTTCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCC
T ss_pred EEEcCCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEECCCCCEEEeecceeeec
Confidence 99999999999998865 4689999999999999999999999 9999999999999999999999999999864
Q ss_pred cCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcc--cHHHHHHHHHhhccccc
Q 035998 896 LSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSR--DLISWVIRMRQENRESE 973 (1020)
Q Consensus 896 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~--~~~~~~~~~~~~~~~~~ 973 (1020)
... .......+||+.|+|||++.+..++.++||||+||++|||++|+.||......+.. ............... .
T Consensus 204 ~~~--~~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~~-~ 280 (396)
T 4dc2_A 204 LRP--GDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQI-R 280 (396)
T ss_dssp CCT--TCCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHHHHHHHHCCC-C
T ss_pred ccC--CCccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHHHHHHhcccc-C
Confidence 322 22344568999999999999999999999999999999999999999754322211 111111111111111 0
Q ss_pred ccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCH------HHHHH
Q 035998 974 VLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTT------QQLVS 1014 (1020)
Q Consensus 974 ~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~------~evl~ 1014 (1020)
-| ......+.+++.+||+.||.+||++ +|+++
T Consensus 281 --~p-------~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~ei~~ 318 (396)
T 4dc2_A 281 --IP-------RSLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQG 318 (396)
T ss_dssp --CC-------TTSCHHHHHHHHHHTCSCTTTSTTCSTTTHHHHHHH
T ss_pred --CC-------CcCCHHHHHHHHHHhcCCHhHcCCCCCCCCHHHHhc
Confidence 00 1112357899999999999999995 56655
No 91
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=100.00 E-value=7.6e-39 Score=357.13 Aligned_cols=250 Identities=26% Similarity=0.355 Sum_probs=204.0
Q ss_pred cCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCch------hhHHHHHHHHHHHHHcCCCccceEeeEEeccCceE
Q 035998 742 NNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCG------QMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRL 814 (1020)
Q Consensus 742 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~------~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 814 (1020)
++|++.+.||+|+||.||+|+.. +++.||+|++..... ...+.+.+|++++++++||||+++++++.+....+
T Consensus 11 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~ 90 (326)
T 2y0a_A 11 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVI 90 (326)
T ss_dssp HHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred cceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence 46899999999999999999875 689999999875432 13567899999999999999999999999999999
Q ss_pred EEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCC----CeEEeecc
Q 035998 815 LIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNF----GAHLADFG 890 (1020)
Q Consensus 815 lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~----~~kl~Dfg 890 (1020)
+||||+++++|.+++... ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++ .+||+|||
T Consensus 91 lv~e~~~~~~L~~~l~~~----~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg 163 (326)
T 2y0a_A 91 LILELVAGGELFDFLAEK----ESLTEEEATEFLKQILNGVYYLHSL---QIAHFDLKPENIMLLDRNVPKPRIKIIDFG 163 (326)
T ss_dssp EEEECCCSCBHHHHHTTS----SCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCSSSSSCCEEECCCT
T ss_pred EEEEcCCCCCHHHHHHhc----CCcCHHHHHHHHHHHHHHHHHHHHC---CeEcCCCCHHHEEEecCCCCCCCEEEEECC
Confidence 999999999999998753 4689999999999999999999999 999999999999999887 79999999
Q ss_pred ccccccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcc
Q 035998 891 LARLILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENR 970 (1020)
Q Consensus 891 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~ 970 (1020)
+++..... .......||+.|+|||++.+..++.++||||+||++|+|++|+.||...... ... ........
T Consensus 164 ~a~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~---~~~---~~~~~~~~ 234 (326)
T 2y0a_A 164 LAHKIDFG---NEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQ---ETL---ANVSAVNY 234 (326)
T ss_dssp TCEECCTT---SCCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHH---HHH---HHHHHTCC
T ss_pred CCeECCCC---CccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHH---HHH---HHHHhcCC
Confidence 99876422 1233457999999999999999999999999999999999999999643211 111 11111110
Q ss_pred cccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 971 ESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 971 ~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
...+..... ....+.+++.+||+.||++|||++|+++
T Consensus 235 ---~~~~~~~~~----~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 271 (326)
T 2y0a_A 235 ---EFEDEYFSN----TSALAKDFIRRLLVKDPKKRMTIQDSLQ 271 (326)
T ss_dssp ---CCCHHHHTT----SCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred ---CcCcccccc----CCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 001111111 1235789999999999999999999987
No 92
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=100.00 E-value=1.9e-39 Score=378.79 Aligned_cols=257 Identities=27% Similarity=0.425 Sum_probs=209.1
Q ss_pred hccCCCcCCeeeccCCeEEEEEEeCCCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEEEe
Q 035998 740 STNNFDQANIIGCGGFGLVYRATLPDGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIYSF 819 (1020)
Q Consensus 740 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 819 (1020)
..++|++.+.||+|+||.||+|+++++..||||+++... ...+.+.+|++++++++||||+++++++. .+..++||||
T Consensus 186 ~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~~lv~e~ 263 (454)
T 1qcf_A 186 PRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIYIITEF 263 (454)
T ss_dssp CGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEECC
T ss_pred chHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCC-ccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCccEEEEee
Confidence 356788999999999999999999888999999998654 33578999999999999999999999986 6678999999
Q ss_pred ccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccCCC
Q 035998 820 MENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILSPY 899 (1020)
Q Consensus 820 ~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~ 899 (1020)
+++|+|.++++... ...+++..++.++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+++.....
T Consensus 264 ~~~g~L~~~l~~~~--~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~- 337 (454)
T 1qcf_A 264 MAKGSLLDFLKSDE--GSKQPLPKLIDFSAQIAEGMAFIEQR---NYIHRDLRAANILVSASLVCKIADFGLARVIEDN- 337 (454)
T ss_dssp CTTCBHHHHHHSHH--HHTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTCCEEECSTTGGGGBCCH-
T ss_pred cCCCcHHHHHHhcc--CCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCHHHEEECCCCcEEEeeCCCceEcCCC-
Confidence 99999999997541 13578899999999999999999999 9999999999999999999999999999876321
Q ss_pred CcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHc-CCCCCCCCCCCCcccHHHHHHHHHhhcccccccCcc
Q 035998 900 DTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLT-GKRPMDMCKPKGSRDLISWVIRMRQENRESEVLDPF 978 (1020)
Q Consensus 900 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 978 (1020)
.........+++.|+|||++....++.++|||||||++|||+| |+.||...... +.. .......... .
T Consensus 338 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~~---~~~---~~i~~~~~~~---~-- 406 (454)
T 1qcf_A 338 EYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNP---EVI---RALERGYRMP---R-- 406 (454)
T ss_dssp HHHTTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH---HHH---HHHHHTCCCC---C--
T ss_pred ceeccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCHH---HHH---HHHHcCCCCC---C--
Confidence 1111223456778999999988899999999999999999999 99999754321 111 1111111110 0
Q ss_pred ccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhcC
Q 035998 979 IYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSII 1020 (1020)
Q Consensus 979 ~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~il 1020 (1020)
+......+.+++.+||+.||++|||++++++.|+++.
T Consensus 407 -----~~~~~~~l~~li~~cl~~dp~~RPt~~~i~~~L~~~~ 443 (454)
T 1qcf_A 407 -----PENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDDFY 443 (454)
T ss_dssp -----CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSS
T ss_pred -----CCCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHH
Confidence 1112346889999999999999999999999999863
No 93
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.7e-38 Score=357.77 Aligned_cols=263 Identities=25% Similarity=0.396 Sum_probs=210.2
Q ss_pred hccCCCcCCeeeccCCeEEEEEEe------CCCCEEEEEEecCCc-hhhHHHHHHHHHHHHHc-CCCccceEeeEEeccC
Q 035998 740 STNNFDQANIIGCGGFGLVYRATL------PDGRNVAIKRLSGDC-GQMEREFRAEVEALSRA-QHPNLVHLQGYCMHKN 811 (1020)
Q Consensus 740 ~~~~~~~~~~lg~G~~g~V~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~ 811 (1020)
..++|++.+.||+|+||.||+|+. .++..||||++.... ....+.+.+|+++++++ +||||+++++++...+
T Consensus 43 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~ 122 (344)
T 1rjb_A 43 PRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSG 122 (344)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred CHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeCC
Confidence 457899999999999999999985 245689999997543 22346789999999999 8999999999999999
Q ss_pred ceEEEEEeccCCChhhhhhhcCCC-------------------CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCC
Q 035998 812 DRLLIYSFMENGSLDYWLHEKLDG-------------------PSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIK 872 (1020)
Q Consensus 812 ~~~lv~e~~~~g~L~~~l~~~~~~-------------------~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk 872 (1020)
..++||||+++|+|.+++...... ...+++..++.++.|++.||+|||++ +|+|||||
T Consensus 123 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dik 199 (344)
T 1rjb_A 123 PIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFK---SCVHRDLA 199 (344)
T ss_dssp SCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHT---TEEETTCS
T ss_pred ccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCC
Confidence 999999999999999999764321 13479999999999999999999999 99999999
Q ss_pred CCCEEEcCCCCeEEeeccccccccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHc-CCCCCCCCC
Q 035998 873 SSNILLDGNFGAHLADFGLARLILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLT-GKRPMDMCK 951 (1020)
Q Consensus 873 p~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-g~~pf~~~~ 951 (1020)
|+||+++.++.+||+|||+++...............+|+.|+|||++.+..++.++||||||+++|||+| |..||....
T Consensus 200 p~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~ 279 (344)
T 1rjb_A 200 ARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIP 279 (344)
T ss_dssp GGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC
T ss_pred hhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCcccCC
Confidence 9999999999999999999987654433333445667889999999988899999999999999999998 999997543
Q ss_pred CCCcccHHHHHHHHHhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhcC
Q 035998 952 PKGSRDLISWVIRMRQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSII 1020 (1020)
Q Consensus 952 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~il 1020 (1020)
... ... ........ .. .+......+.+++.+||+.||.+||+++|+++.|+.++
T Consensus 280 ~~~--~~~---~~~~~~~~-~~---------~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~ 333 (344)
T 1rjb_A 280 VDA--NFY---KLIQNGFK-MD---------QPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFLGCQL 333 (344)
T ss_dssp CSH--HHH---HHHHTTCC-CC---------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC
T ss_pred cHH--HHH---HHHhcCCC-CC---------CCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHH
Confidence 321 111 11111111 00 01111246889999999999999999999999998764
No 94
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=100.00 E-value=1.7e-38 Score=357.95 Aligned_cols=254 Identities=22% Similarity=0.323 Sum_probs=205.0
Q ss_pred cCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc-----hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEE
Q 035998 742 NNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC-----GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLL 815 (1020)
Q Consensus 742 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-----~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 815 (1020)
++|++.+.||+|+||.||+|+.+ +++.||||++.... ....+.+.+|++++++++||||+++++++.+.+..++
T Consensus 24 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~l 103 (351)
T 3c0i_A 24 DVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLYM 103 (351)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred cceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEE
Confidence 46899999999999999999864 68999999986421 1135678999999999999999999999999999999
Q ss_pred EEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCC---eEEeecccc
Q 035998 816 IYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFG---AHLADFGLA 892 (1020)
Q Consensus 816 v~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~---~kl~Dfg~~ 892 (1020)
||||+++++|.+++.........+++..+..++.||+.||+|||++ +|+||||||+||+++.++. +||+|||++
T Consensus 104 v~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a 180 (351)
T 3c0i_A 104 VFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDN---NIIHRDVKPHCVLLASKENSAPVKLGGFGVA 180 (351)
T ss_dssp EEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECSSSTTCCEEECCCTTC
T ss_pred EEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCChHHeEEecCCCCCcEEEecCcce
Confidence 9999999999988876544455689999999999999999999999 9999999999999986654 999999999
Q ss_pred ccccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccc
Q 035998 893 RLILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRES 972 (1020)
Q Consensus 893 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~ 972 (1020)
+..... ........||+.|+|||++.+..++.++||||+||++|||++|+.||.... .... ........
T Consensus 181 ~~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~----~~~~---~~i~~~~~-- 249 (351)
T 3c0i_A 181 IQLGES--GLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTK----ERLF---EGIIKGKY-- 249 (351)
T ss_dssp EECCTT--SCBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSH----HHHH---HHHHHTCC--
T ss_pred eEecCC--CeeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcH----HHHH---HHHHcCCC--
Confidence 876432 222344679999999999999999999999999999999999999997421 1111 11111110
Q ss_pred cccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 973 EVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 973 ~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
...+..... ....+.+++.+||+.||++|||+.|+++
T Consensus 250 -~~~~~~~~~----~s~~~~~li~~~L~~dP~~R~s~~e~l~ 286 (351)
T 3c0i_A 250 -KMNPRQWSH----ISESAKDLVRRMLMLDPAERITVYEALN 286 (351)
T ss_dssp -CCCHHHHTT----SCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred -CCCcccccc----CCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 011111111 1236789999999999999999999986
No 95
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=100.00 E-value=1.9e-38 Score=350.75 Aligned_cols=259 Identities=27% Similarity=0.466 Sum_probs=200.7
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeCCCCEEEEEEecCCc--hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEEE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLPDGRNVAIKRLSGDC--GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIYS 818 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 818 (1020)
.++|++.+.||+|+||.||+|+.. ..+|+|+++... ....+.+.+|++++++++||||+++++++. .+..++|||
T Consensus 35 ~~~~~~~~~lG~G~~g~Vy~~~~~--~~~avk~~k~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-~~~~~lv~e 111 (307)
T 3lb7_A 35 ASEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMT-KDNLAIVTQ 111 (307)
T ss_dssp TTSCCEEEEEEECSSCEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEEE
T ss_pred ccceEEEeEecCCCCeEEEEEEEC--CEEEEEEEecCCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc-cCcEEEEEe
Confidence 467999999999999999999864 468999887533 334567899999999999999999999865 556899999
Q ss_pred eccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccCC
Q 035998 819 FMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILSP 898 (1020)
Q Consensus 819 ~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~ 898 (1020)
|+++++|.+++... ...+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++.....
T Consensus 112 ~~~~~~L~~~l~~~---~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~DFg~a~~~~~~ 185 (307)
T 3lb7_A 112 WCEGSSLYKHLHVQ---ETKFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRW 185 (307)
T ss_dssp CCSSCBHHHHHHTS---CCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCSSSEEECTTSCEEECCCCSSCC----
T ss_pred cCCCCcHHHHHHhc---ccCCCHHHHHHHHHHHHHHHHHHHhC---CEeeCCCChhhEEEcCCCCEEEccCCCceecccc
Confidence 99999999998753 35689999999999999999999999 9999999999999999999999999999865432
Q ss_pred CCcccccccccccCccCccccC---CCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhccccccc
Q 035998 899 YDTHVTTDLVGTLGYIPPEYGQ---ASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVL 975 (1020)
Q Consensus 899 ~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 975 (1020)
..........||+.|+|||++. +..++.++||||+|+++|||++|+.||...... +.... .......... .
T Consensus 186 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~elltg~~Pf~~~~~~---~~~~~--~~~~~~~~~~-~ 259 (307)
T 3lb7_A 186 SGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNR---DQIIF--MVGRGYASPD-L 259 (307)
T ss_dssp --------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCH---HHHHH--HHHHTCCCCC-S
T ss_pred cccccccCCCCCcceECcceeeccCCCCCCchhhHHHHHHHHHHHHhCCCCCccCCcH---HHHHH--HHhcCCCCcc-h
Confidence 2233344567999999999875 667899999999999999999999999754322 11111 1111111111 0
Q ss_pred CccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 976 DPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 976 d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
+.... .....+.+++.+||+.||++||++.|+++.|+.+
T Consensus 260 -~~~~~----~~~~~l~~li~~~l~~~p~~RPs~~~il~~l~~l 298 (307)
T 3lb7_A 260 -SKLYK----NCPKAMKRLVADCVKKVKEERPLFPQILSSIELL 298 (307)
T ss_dssp -TTSCS----SSCHHHHHHHHHHSCSSSTTSCCHHHHHHHHHHH
T ss_pred -hhhhc----CCcHHHHHHHHHHhhCChhhCcCHHHHHHHHHHH
Confidence 01111 1224688999999999999999999999998864
No 96
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=100.00 E-value=2.6e-39 Score=361.10 Aligned_cols=255 Identities=24% Similarity=0.386 Sum_probs=202.0
Q ss_pred cCCCcCCeeeccCCeEEEEEEeC-CCCE----EEEEEecCCc-hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEE
Q 035998 742 NNFDQANIIGCGGFGLVYRATLP-DGRN----VAIKRLSGDC-GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLL 815 (1020)
Q Consensus 742 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~----vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 815 (1020)
++|++.+.||+|+||.||+|++. +++. ||+|.+.... ....+.+.+|+.++++++||||+++++++. .+..++
T Consensus 13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~ 91 (325)
T 3kex_A 13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP-GSSLQL 91 (325)
T ss_dssp TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC-BSSEEE
T ss_pred hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc-CCccEE
Confidence 57899999999999999999864 4443 8888875443 222345778999999999999999999986 567899
Q ss_pred EEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccc
Q 035998 816 IYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLI 895 (1020)
Q Consensus 816 v~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~ 895 (1020)
||||+++|+|.+++... ...+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++..
T Consensus 92 v~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~ 165 (325)
T 3kex_A 92 VTQYLPLGSLLDHVRQH---RGALGPQLLLNWGVQIAKGMYYLEEH---GMVHRNLAARNVLLKSPSQVQVADFGVADLL 165 (325)
T ss_dssp EEECCTTCBSHHHHHSS---GGGSCTTHHHHHHHHHHHHHHHHHHT---TCCCSCCSSTTEEESSSSCEEECSCSGGGGS
T ss_pred EEEeCCCCCHHHHHHHc---cccCCHHHHHHHHHHHHHHHHHHHhC---CCCCCccchheEEECCCCeEEECCCCccccc
Confidence 99999999999998754 24678899999999999999999999 9999999999999999999999999999987
Q ss_pred cCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHc-CCCCCCCCCCCCcccHHHHHHHHHhhcccccc
Q 035998 896 LSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLT-GKRPMDMCKPKGSRDLISWVIRMRQENRESEV 974 (1020)
Q Consensus 896 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 974 (1020)
.............++..|+|||++.+..++.++||||+|+++|||++ |+.||......+.... .......
T Consensus 166 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~------~~~~~~~--- 236 (325)
T 3kex_A 166 PPDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLAEVPDL------LEKGERL--- 236 (325)
T ss_dssp CCCTTCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTTHHHHH------HHTTCBC---
T ss_pred CcccccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCHHHHHHH------HHcCCCC---
Confidence 55443344455677889999999998999999999999999999999 9999976543322111 1111110
Q ss_pred cCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 975 LDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 975 ~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
..+.. ....+.+++.+||+.||.+||+++++++.|+++
T Consensus 237 ~~~~~-------~~~~~~~li~~~l~~dp~~Rps~~el~~~l~~~ 274 (325)
T 3kex_A 237 AQPQI-------CTIDVYMVMVKCWMIDENIRPTFKELANEFTRM 274 (325)
T ss_dssp CCCTT-------BCTTTTHHHHHHTCSCTTTSCCHHHHHHHHHHH
T ss_pred CCCCc-------CcHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 01100 112467899999999999999999999999875
No 97
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=100.00 E-value=1.4e-38 Score=357.72 Aligned_cols=248 Identities=25% Similarity=0.363 Sum_probs=199.4
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc---hhhHHHHHHHHHHHHHc-CCCccceEeeEEeccCceEE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC---GQMEREFRAEVEALSRA-QHPNLVHLQGYCMHKNDRLL 815 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l 815 (1020)
.++|++.+.||+|+||.||+|+.+ +++.||||++.... ....+.+.+|.++++.+ +||||+++++++.+.+..++
T Consensus 22 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l 101 (353)
T 3txo_A 22 IDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLFF 101 (353)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred hhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEEE
Confidence 468999999999999999999865 68999999997542 22345678899999988 79999999999999999999
Q ss_pred EEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccc
Q 035998 816 IYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLI 895 (1020)
Q Consensus 816 v~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~ 895 (1020)
||||+++|+|..++... ..+++..++.++.||+.||+|||++ +|+||||||+||+++.++++||+|||+++..
T Consensus 102 v~E~~~gg~L~~~l~~~----~~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NILl~~~g~ikL~DFG~a~~~ 174 (353)
T 3txo_A 102 VMEFVNGGDLMFHIQKS----RRFDEARARFYAAEIISALMFLHDK---GIIYRDLKLDNVLLDHEGHCKLADFGMCKEG 174 (353)
T ss_dssp EEECCCSCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCS
T ss_pred EEeCCCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHC---CCcccCCCHHHEEECCCCCEEEccccceeec
Confidence 99999999999999765 4689999999999999999999999 9999999999999999999999999999864
Q ss_pred cCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhccccccc
Q 035998 896 LSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVL 975 (1020)
Q Consensus 896 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 975 (1020)
... .......+||+.|+|||++.+..++.++||||+||++|||++|+.||...... + ....+..... .
T Consensus 175 ~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~---~---~~~~i~~~~~----~ 242 (353)
T 3txo_A 175 ICN--GVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENED---D---LFEAILNDEV----V 242 (353)
T ss_dssp CC-----------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSSHH---H---HHHHHHHCCC----C
T ss_pred ccC--CccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCCHH---H---HHHHHHcCCC----C
Confidence 322 22334567999999999998889999999999999999999999999753221 1 1112211110 0
Q ss_pred CccccCccCHHHHHHHHHHHhhccCCCCCCCCCH------HHHHH
Q 035998 976 DPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTT------QQLVS 1014 (1020)
Q Consensus 976 d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~------~evl~ 1014 (1020)
.| ......+.+++.+|++.||++||++ +|+++
T Consensus 243 ~p-------~~~~~~~~~li~~lL~~dP~~R~~~~~~~~~~~il~ 280 (353)
T 3txo_A 243 YP-------TWLHEDATGILKSFMTKNPTMRLGSLTQGGEHAILR 280 (353)
T ss_dssp CC-------TTSCHHHHHHHHHHTCSSGGGSTTSGGGTCTHHHHT
T ss_pred CC-------CCCCHHHHHHHHHHhhhCHHHccCCcccCCHHHHhh
Confidence 01 1112357899999999999999998 77765
No 98
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=100.00 E-value=4.2e-39 Score=379.45 Aligned_cols=257 Identities=25% Similarity=0.395 Sum_probs=211.1
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeCC-CCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEEEe
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLPD-GRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIYSF 819 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 819 (1020)
.++|++.+.||+|+||.||+|+++. +..||||++..... ..+.+.+|++++++++||||++++++|.+....++||||
T Consensus 219 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv~E~ 297 (495)
T 1opk_A 219 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEF 297 (495)
T ss_dssp GGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEEC
T ss_pred HHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCccc-chHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEEEEc
Confidence 3568889999999999999999764 78999999986543 356799999999999999999999999999999999999
Q ss_pred ccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccCCC
Q 035998 820 MENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILSPY 899 (1020)
Q Consensus 820 ~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~ 899 (1020)
+++|+|.++++.. ....+++..++.++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+++......
T Consensus 298 ~~~g~L~~~l~~~--~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~ 372 (495)
T 1opk_A 298 MTYGNLLDYLREC--NRQEVSAVVLLYMATQISSAMEYLEKK---NFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDT 372 (495)
T ss_dssp CTTCBHHHHHHHS--CTTTSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECGGGCEEECCTTCEECCTTCC
T ss_pred cCCCCHHHHHHhc--CcCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChhhEEECCCCcEEEeecccceeccCCc
Confidence 9999999999864 234689999999999999999999999 99999999999999999999999999998764321
Q ss_pred CcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHc-CCCCCCCCCCCCcccHHHHHHHHHhhcccccccCcc
Q 035998 900 DTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLT-GKRPMDMCKPKGSRDLISWVIRMRQENRESEVLDPF 978 (1020)
Q Consensus 900 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 978 (1020)
........+++.|+|||++.+..++.++|||||||++|||++ |..||....... .... .......
T Consensus 373 -~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~~---~~~~---~~~~~~~------- 438 (495)
T 1opk_A 373 -YTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQ---VYEL---LEKDYRM------- 438 (495)
T ss_dssp -EECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGG---HHHH---HHTTCCC-------
T ss_pred -eeecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCHHH---HHHH---HHcCCCC-------
Confidence 122233456788999999988899999999999999999999 999997544321 1111 1111110
Q ss_pred ccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhcC
Q 035998 979 IYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSII 1020 (1020)
Q Consensus 979 ~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~il 1020 (1020)
..+......+.+++.+||+.||++|||++++++.|++++
T Consensus 439 ---~~~~~~~~~l~~li~~cl~~dP~~RPs~~el~~~L~~~~ 477 (495)
T 1opk_A 439 ---ERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMF 477 (495)
T ss_dssp ---CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSC
T ss_pred ---CCCCCCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHH
Confidence 011122246889999999999999999999999999864
No 99
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.1e-37 Score=366.13 Aligned_cols=347 Identities=27% Similarity=0.386 Sum_probs=211.1
Q ss_pred cCCCCCcEEecCCCCCCCCCCccccCCCCCCeeeccCCCCCCCCCCccCCCCcceeeeccCccCCCCCccccccCCcccE
Q 035998 106 GNLVQLRFLNLSHNLLKGTVPVSLVNLPNLEVLDLSSNDLSGPLPQTINLPSIQVLDISSNSLNGSVPTSICKNSSRIRV 185 (1020)
Q Consensus 106 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~ 185 (1020)
..+++|+.|++++|.++ .+| .+..+++|++|+|++|.+++.++ ..++++|++|+|++|++++..| +..+++|++
T Consensus 43 ~~l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~ 116 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP---LANLTNLTG 116 (466)
T ss_dssp HHHHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG---GTTCTTCCE
T ss_pred hHhccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh---hcCCCCCCE
Confidence 34567778888888777 455 36777888888888888877655 3367778888888887774333 456777777
Q ss_pred EEccCCCCCCCCCCccccccccccccccccccccccchhhhhhcccccccccccccCCCCCcccccCCCccEEEccCCcC
Q 035998 186 INLSVNYFSGTLSPGLGNCASLEHLCLGMNDLTGGIADDIFQLQKLRLLGLQDNQLSGKLSPSIADLSNLVRLDVSSNNF 265 (1020)
Q Consensus 186 L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 265 (1020)
|++++|.+++..+ ++++++|++|++++|.+++ ++ .+..+++|++|+++ |.+.+.. .+.++++|++|++++|.+
T Consensus 117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKV 189 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcC
Confidence 7777777765432 6777777777777777774 23 36677777777775 4454332 366777777777777777
Q ss_pred cccCcccccCCcccceeecccccccccCCCCCcCCcccccccccccccccccccCCCCCCCcCEEEcCCCccCCCCCCCC
Q 035998 266 SGNIPDVFAGLGEFQYLVAHSNRFTGRIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNKFNGPLPTNL 345 (1020)
Q Consensus 266 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l 345 (1020)
++. ..+..+++|++|++++|++++..| ++.+++|+.|++++|.+++. ..+..+++|++|++++|++++..| +
T Consensus 190 ~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~ 261 (466)
T 1o6v_A 190 SDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--L 261 (466)
T ss_dssp CCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred CCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--h
Confidence 643 235666666666666666665443 44555555555555555532 134445555555555555553333 4
Q ss_pred CCCCCCCeEecCCCcccccCcccccCCCCCCeeeCCCCCCcchhhHHHHHhhhcccchhhhhccccCCCCCCCccccccC
Q 035998 346 PRCRKLKNINLARNNFSGQIPETYKNFESLSYLSLSNSSIYNLSSALQVLQQCRNLTTLVLTLNFRNEKLPTDPRLHFAN 425 (1020)
Q Consensus 346 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~i~~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 425 (1020)
..+++|++|++++|++++..+ +..+++|+.|++++|++..+
T Consensus 262 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~------------------------------------- 302 (466)
T 1o6v_A 262 SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI------------------------------------- 302 (466)
T ss_dssp TTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCC-------------------------------------
T ss_pred hcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCc-------------------------------------
Confidence 445555555555555543322 44444444444444443221
Q ss_pred ceEEEecccccccccchhhhcCCCCcEEecccccccccccccccCcCcCcEEeCCCCcccccCCCCCCCCcccccccCcC
Q 035998 426 LKVLVIASCGLRGSIPQWLRGCSKLQLVDLSWNQLSGTIPVWFGGFQDLFYLDLSNNTFTGEIPKNLTGLPSLITRNISL 505 (1020)
Q Consensus 426 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~s~ 505 (1020)
.| +..+++|+.|++++|++++..| +..+++|++|++++|++++
T Consensus 303 --------------~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~------------------- 345 (466)
T 1o6v_A 303 --------------SP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD------------------- 345 (466)
T ss_dssp --------------GG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC-------------------
T ss_pred --------------hh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC-------------------
Confidence 11 4455566666666666665444 4555666666666665552
Q ss_pred CCCCCCcccceeecccccccccccccCCCCeeecccCccccCCCccccCCCcceEEEecCCcceeccCccccCCCcccEE
Q 035998 506 EEPSPDFPFFMRRNVSARGLQYNQIWSFPPTIDLSLNRLDGSIWPEFGNLKKLHVFDLKHNNLSGPIPSELTGMTSLETL 585 (1020)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~l~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 585 (1020)
. +.++.+++|+.|++++|++++..| +..+++|+.|
T Consensus 346 -----------------------------------------~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 380 (466)
T 1o6v_A 346 -----------------------------------------V--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQL 380 (466)
T ss_dssp -----------------------------------------C--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEE
T ss_pred -----------------------------------------c--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEE
Confidence 1 235556677777777777776555 6777777777
Q ss_pred EccCCcccc
Q 035998 586 DLSYNNLSG 594 (1020)
Q Consensus 586 ~Ls~N~l~g 594 (1020)
++++|++++
T Consensus 381 ~l~~n~~~~ 389 (466)
T 1o6v_A 381 GLNDQAWTN 389 (466)
T ss_dssp ECCCEEEEC
T ss_pred eccCCcccC
Confidence 777777775
No 100
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.7e-39 Score=356.15 Aligned_cols=246 Identities=24% Similarity=0.333 Sum_probs=201.5
Q ss_pred ccCCCcCCeeeccCCeEEEEEEe-CCCCEEEEEEecCCch---hhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATL-PDGRNVAIKRLSGDCG---QMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLI 816 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 816 (1020)
.++|++.+.||+|+||.||+|+. .+++.||||++..... .....+.+|+++++.++||||+++++++.+.+..++|
T Consensus 8 i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv 87 (336)
T 3h4j_B 8 IGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMV 87 (336)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence 36799999999999999999996 5789999999865321 1235688999999999999999999999999999999
Q ss_pred EEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeecccccccc
Q 035998 817 YSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLIL 896 (1020)
Q Consensus 817 ~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~ 896 (1020)
|||+ +|+|.+++... ..+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++...
T Consensus 88 ~E~~-~g~l~~~l~~~----~~l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~ 159 (336)
T 3h4j_B 88 IEYA-GGELFDYIVEK----KRMTEDEGRRFFQQIICAIEYCHRH---KIVHRDLKPENLLLDDNLNVKIADFGLSNIMT 159 (336)
T ss_dssp ECCC-CEEHHHHHHHH----CSCCHHHHHHHHHHHHHHHHHHHHH---TCCCCCCSTTTEEECTTCCEEECCSSCTBTTT
T ss_pred EECC-CCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCchhhEEEcCCCCEEEEEeccceecc
Confidence 9999 67888888764 4689999999999999999999999 99999999999999999999999999998653
Q ss_pred CCCCcccccccccccCccCccccCCCCC-CchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhccccccc
Q 035998 897 SPYDTHVTTDLVGTLGYIPPEYGQASVA-TYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVL 975 (1020)
Q Consensus 897 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 975 (1020)
.. .......||+.|+|||++.+..+ +.++||||+||++|+|++|+.||...........+ ...
T Consensus 160 ~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~~~~i------------~~~- 223 (336)
T 3h4j_B 160 DG---NFLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPNLFKKV------------NSC- 223 (336)
T ss_dssp TS---BTTCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSSTTCBCCC------------CSS-
T ss_pred CC---cccccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHHHHHHHH------------HcC-
Confidence 32 23345679999999999988776 78999999999999999999999754332211110 000
Q ss_pred CccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 976 DPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 976 d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
.. ..+......+.+++.+||+.||.+|||++|+++
T Consensus 224 ~~----~~p~~~s~~~~~li~~~L~~dP~~Rpt~~eil~ 258 (336)
T 3h4j_B 224 VY----VMPDFLSPGAQSLIRRMIVADPMQRITIQEIRR 258 (336)
T ss_dssp CC----CCCTTSCHHHHHHHHTTSCSSGGGSCCHHHHTT
T ss_pred CC----CCcccCCHHHHHHHHHHcCCChhHCcCHHHHHh
Confidence 00 001112235789999999999999999999986
No 101
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=100.00 E-value=8.3e-39 Score=350.66 Aligned_cols=261 Identities=23% Similarity=0.333 Sum_probs=200.3
Q ss_pred cCCCcCCeeeccCCeEEEEEEeCCCCEEEEEEecCCch--hhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEEEe
Q 035998 742 NNFDQANIIGCGGFGLVYRATLPDGRNVAIKRLSGDCG--QMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIYSF 819 (1020)
Q Consensus 742 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 819 (1020)
++|++.+.||+|+||.||+|+..+++.||+|++..... ...+.+.+|++++++++||||+++++++.+.+..++||||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 81 (288)
T 1ob3_A 2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH 81 (288)
T ss_dssp CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEe
Confidence 47899999999999999999988899999999975532 2236788999999999999999999999999999999999
Q ss_pred ccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccCCC
Q 035998 820 MENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILSPY 899 (1020)
Q Consensus 820 ~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~ 899 (1020)
+++ +|.+++... ...+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++....+.
T Consensus 82 ~~~-~l~~~~~~~---~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 154 (288)
T 1ob3_A 82 LDQ-DLKKLLDVC---EGGLESVTAKSFLLQLLNGIAYCHDR---RVLHRDLKPQNLLINREGELKIADFGLARAFGIPV 154 (288)
T ss_dssp CSE-EHHHHHHTS---TTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC--
T ss_pred cCC-CHHHHHHhc---ccCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEEeECccccccCccc
Confidence 986 888888653 24689999999999999999999999 99999999999999999999999999998764322
Q ss_pred CcccccccccccCccCccccCC-CCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhccccc-----
Q 035998 900 DTHVTTDLVGTLGYIPPEYGQA-SVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESE----- 973 (1020)
Q Consensus 900 ~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~----- 973 (1020)
.......||+.|+|||++.+ ..++.++||||+||++|||++|+.||..... .+................
T Consensus 155 --~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 229 (288)
T 1ob3_A 155 --RKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSE---ADQLMRIFRILGTPNSKNWPNVT 229 (288)
T ss_dssp ---------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSH---HHHHHHHHHHHCCCCTTTSTTGG
T ss_pred --cccccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH---HHHHHHHHHHHCCCChhhchhhh
Confidence 22234578999999998865 4689999999999999999999999975322 122221111111100000
Q ss_pred ---ccCcc-------ccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 974 ---VLDPF-------IYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 974 ---~~d~~-------~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
..++. ............+.+++.+||+.||++|||++|+++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 280 (288)
T 1ob3_A 230 ELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALE 280 (288)
T ss_dssp GSTTCCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred cccccccccccccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 00000 000111122346789999999999999999999986
No 102
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=100.00 E-value=1.7e-38 Score=359.75 Aligned_cols=249 Identities=23% Similarity=0.364 Sum_probs=203.3
Q ss_pred cCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc---hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEE
Q 035998 742 NNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC---GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIY 817 (1020)
Q Consensus 742 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 817 (1020)
++|++.+.||+|+||.||+|+.. +++.||+|++.... ....+.+.+|+++++.++|||||++++++.+.+..++||
T Consensus 15 ~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv~ 94 (384)
T 4fr4_A 15 DHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMVV 94 (384)
T ss_dssp GGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEE
Confidence 57899999999999999999865 58899999986542 123457889999999999999999999999999999999
Q ss_pred EeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccC
Q 035998 818 SFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILS 897 (1020)
Q Consensus 818 e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~ 897 (1020)
||+.+|+|..++... ..+++..++.++.||+.||+|||+. +|+||||||+||+++.++.+||+|||+++....
T Consensus 95 e~~~gg~L~~~l~~~----~~l~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~ 167 (384)
T 4fr4_A 95 DLLLGGDLRYHLQQN----VHFKEETVKLFICELVMALDYLQNQ---RIIHRDMKPDNILLDEHGHVHITDFNIAAMLPR 167 (384)
T ss_dssp CCCTTEEHHHHHHTT----CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECCT
T ss_pred ecCCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCcHHHeEECCCCCEEEeccceeeeccC
Confidence 999999999998764 4689999999999999999999999 999999999999999999999999999987632
Q ss_pred CCCcccccccccccCccCccccCC---CCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccccc
Q 035998 898 PYDTHVTTDLVGTLGYIPPEYGQA---SVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEV 974 (1020)
Q Consensus 898 ~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 974 (1020)
. .......||+.|+|||++.+ ..++.++||||+||++|||++|+.||............. ....... .
T Consensus 168 ~---~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~~~~~~---~~~~~~~--~- 238 (384)
T 4fr4_A 168 E---TQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSSKEIVH---TFETTVV--T- 238 (384)
T ss_dssp T---CCBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSCHHHHHH---HHHHCCC--C-
T ss_pred C---CceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCccHHHHHH---HHhhccc--C-
Confidence 2 23345689999999998864 468999999999999999999999997544333222221 1111110 0
Q ss_pred cCccccCccCHHHHHHHHHHHhhccCCCCCCCCC-HHHHHH
Q 035998 975 LDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPT-TQQLVS 1014 (1020)
Q Consensus 975 ~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs-~~evl~ 1014 (1020)
. +......+.+++.+||+.||.+||+ ++++.+
T Consensus 239 -~-------p~~~s~~~~~li~~lL~~dP~~R~s~~~~l~~ 271 (384)
T 4fr4_A 239 -Y-------PSAWSQEMVSLLKKLLEPNPDQRFSQLSDVQN 271 (384)
T ss_dssp -C-------CTTSCHHHHHHHHHHSCSSGGGSCCSHHHHHT
T ss_pred -C-------CCcCCHHHHHHHHHHhcCCHhHhcccHHHHHc
Confidence 0 1111236889999999999999998 777664
No 103
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=100.00 E-value=3.4e-38 Score=342.61 Aligned_cols=251 Identities=31% Similarity=0.468 Sum_probs=194.5
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeCCCCEEEEEEecCCch----hhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLPDGRNVAIKRLSGDCG----QMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLI 816 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~----~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 816 (1020)
.++|++.+.||+|+||.||+|.+. ++.||||++..... ...+.+.+|+++++.++||||+++++++.+.+..++|
T Consensus 6 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 84 (271)
T 3dtc_A 6 FAELTLEEIIGIGGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLV 84 (271)
T ss_dssp TTSEEEEEEEEEETTEEEEEEEET-TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEE
T ss_pred hhheeeeeeeccCCCeEEEEEEEc-CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEE
Confidence 357899999999999999999985 88999999875432 2246788999999999999999999999999999999
Q ss_pred EEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCC---eEecCCCCCCEEEcC--------CCCeE
Q 035998 817 YSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPH---ILHRDIKSSNILLDG--------NFGAH 885 (1020)
Q Consensus 817 ~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~---ivH~Dlkp~NIll~~--------~~~~k 885 (1020)
|||+++++|.+++.. ..+++..++.++.|++.||+|||++ + |+||||||+||+++. ++.+|
T Consensus 85 ~e~~~~~~L~~~~~~-----~~~~~~~~~~i~~~l~~~l~~lH~~---~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~k 156 (271)
T 3dtc_A 85 MEFARGGPLNRVLSG-----KRIPPDILVNWAVQIARGMNYLHDE---AIVPIIHRDLKSSNILILQKVENGDLSNKILK 156 (271)
T ss_dssp EECCTTEEHHHHHTS-----SCCCHHHHHHHHHHHHHHHHHHHHS---SSSCCCCSCCSGGGEEESSCCSSSCCSSCCEE
T ss_pred EEcCCCCCHHHHhhc-----CCCCHHHHHHHHHHHHHHHHHHHhC---CCCceeecCCchHHEEEecccccccccCcceE
Confidence 999999999998864 3689999999999999999999999 7 999999999999986 77899
Q ss_pred EeeccccccccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHH
Q 035998 886 LADFGLARLILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRM 965 (1020)
Q Consensus 886 l~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~ 965 (1020)
|+|||+++..... ......|++.|+|||.+.+..++.++||||+|+++|+|++|+.||..... .......
T Consensus 157 l~Dfg~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~------~~~~~~~ 226 (271)
T 3dtc_A 157 ITDFGLAREWHRT----TKMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDG------LAVAYGV 226 (271)
T ss_dssp ECCCCC-----------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCH------HHHHHHH
T ss_pred EccCCcccccccc----cccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH------HHHHHhh
Confidence 9999999865432 12245789999999999999999999999999999999999999974321 1111111
Q ss_pred HhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 966 RQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 966 ~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
........ .+......+.+++.+||+.||++|||++|+++.|+++
T Consensus 227 ~~~~~~~~---------~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~L~~l 271 (271)
T 3dtc_A 227 AMNKLALP---------IPSTCPEPFAKLMEDCWNPDPHSRPSFTNILDQLTTI 271 (271)
T ss_dssp HTSCCCCC---------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHC-
T ss_pred hcCCCCCC---------CCcccCHHHHHHHHHHhcCCcccCcCHHHHHHHHhcC
Confidence 11111111 1111224688999999999999999999999999875
No 104
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=100.00 E-value=1.3e-38 Score=368.15 Aligned_cols=252 Identities=22% Similarity=0.301 Sum_probs=203.7
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc--hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC--GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIY 817 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 817 (1020)
.++|++.+.||+|+||.||+|... +|+.||+|++.... ....+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 10 ~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv~ 89 (444)
T 3soa_A 10 TEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLIF 89 (444)
T ss_dssp HHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEEEE
T ss_pred cCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEEEE
Confidence 457999999999999999999864 68899999987654 233457889999999999999999999999999999999
Q ss_pred EeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEc---CCCCeEEeecccccc
Q 035998 818 SFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLD---GNFGAHLADFGLARL 894 (1020)
Q Consensus 818 e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~---~~~~~kl~Dfg~~~~ 894 (1020)
||+++|+|.+++... ..+++..+..++.||+.||+|||++ +|+||||||+||+++ .++.+||+|||+++.
T Consensus 90 E~~~gg~L~~~i~~~----~~~~e~~~~~i~~qil~aL~~lH~~---givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~ 162 (444)
T 3soa_A 90 DLVTGGELFEDIVAR----EYYSEADASHCIQQILEAVLHCHQM---GVVHRNLKPENLLLASKLKGAAVKLADFGLAIE 162 (444)
T ss_dssp CCCBCCBHHHHHHHC----SCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSSTTEEESBSSTTCCEEECCCSSCBC
T ss_pred EeCCCCCHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEeccCCCCcEEEccCceeEE
Confidence 999999999988764 4689999999999999999999999 999999999999998 568899999999987
Q ss_pred ccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccccc
Q 035998 895 ILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEV 974 (1020)
Q Consensus 895 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 974 (1020)
..... .......||+.|+|||++.+..++.++||||+||++|+|++|..||..... ......+..... ..
T Consensus 163 ~~~~~--~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~~------~~~~~~i~~~~~--~~ 232 (444)
T 3soa_A 163 VEGEQ--QAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQ------HRLYQQIKAGAY--DF 232 (444)
T ss_dssp CCTTC--CBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSSH------HHHHHHHHHTCC--CC
T ss_pred ecCCC--ceeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCccH------HHHHHHHHhCCC--CC
Confidence 64322 223446799999999999999999999999999999999999999964321 111112211111 00
Q ss_pred cCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 975 LDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 975 ~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
..+ ... .....+.+++.+||+.||++|||++|+++
T Consensus 233 ~~~-~~~----~~s~~~~~li~~~L~~dP~~Rpta~e~L~ 267 (444)
T 3soa_A 233 PSP-EWD----TVTPEAKDLINKMLTINPSKRITAAEALK 267 (444)
T ss_dssp CTT-TTT----TSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred Ccc-ccc----cCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 011 011 11235889999999999999999999987
No 105
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=100.00 E-value=1e-38 Score=360.85 Aligned_cols=251 Identities=24% Similarity=0.347 Sum_probs=203.8
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc--hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC--GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIY 817 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 817 (1020)
.++|++.+.||+|+||.||+|..+ +++.||+|++.... ....+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~ 107 (362)
T 2bdw_A 28 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF 107 (362)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred ccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 457999999999999999999865 68999999997543 233467889999999999999999999999999999999
Q ss_pred EeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCC---CCeEEeecccccc
Q 035998 818 SFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGN---FGAHLADFGLARL 894 (1020)
Q Consensus 818 e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~---~~~kl~Dfg~~~~ 894 (1020)
||+++|+|.+++... ..+++..+..++.||+.||+|||++ +|+||||||+||+++.+ +.+||+|||+++.
T Consensus 108 e~~~gg~L~~~l~~~----~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~ 180 (362)
T 2bdw_A 108 DLVTGGELFEDIVAR----EFYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVKLADFGLAIE 180 (362)
T ss_dssp CCCCSCBHHHHHTTC----SCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEESCSSTTCCEEECCCTTCBC
T ss_pred ecCCCCCHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCCCCEEEeecCcceE
Confidence 999999999888754 4689999999999999999999999 99999999999999865 4599999999987
Q ss_pred ccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccccc
Q 035998 895 ILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEV 974 (1020)
Q Consensus 895 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 974 (1020)
.... .......||+.|+|||++.+..++.++||||+||++|+|++|+.||..... ......+..... ..
T Consensus 181 ~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~------~~~~~~i~~~~~--~~ 249 (362)
T 2bdw_A 181 VNDS---EAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQ------HRLYAQIKAGAY--DY 249 (362)
T ss_dssp CTTC---CSCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH------HHHHHHHHHTCC--CC
T ss_pred ecCC---cccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCH------HHHHHHHHhCCC--CC
Confidence 6432 223346799999999999999999999999999999999999999964321 111111211111 00
Q ss_pred cCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 975 LDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 975 ~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
..+ ... .....+.+++.+||+.||++||+++|+++
T Consensus 250 ~~~-~~~----~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 284 (362)
T 2bdw_A 250 PSP-EWD----TVTPEAKSLIDSMLTVNPKKRITADQALK 284 (362)
T ss_dssp CTT-GGG----GSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred Ccc-ccc----CCCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 000 011 11235789999999999999999999986
No 106
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=100.00 E-value=6.7e-38 Score=351.46 Aligned_cols=254 Identities=22% Similarity=0.400 Sum_probs=202.7
Q ss_pred cCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc---hhhHHHHHHHHHHHHHc-CCCccceEeeEEeccCceEEE
Q 035998 742 NNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC---GQMEREFRAEVEALSRA-QHPNLVHLQGYCMHKNDRLLI 816 (1020)
Q Consensus 742 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv 816 (1020)
++|++.+.||+|+||.||+|+.+ +++.||+|++.... ....+.+.+|+++++++ +||||+++++++.+.+..++|
T Consensus 9 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv 88 (345)
T 3a8x_A 9 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFV 88 (345)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEEE
Confidence 56899999999999999999975 58899999997543 23345678899999988 899999999999999999999
Q ss_pred EEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeecccccccc
Q 035998 817 YSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLIL 896 (1020)
Q Consensus 817 ~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~ 896 (1020)
|||+++|+|.+++... ..+++..++.++.||+.||+|||++ +|+||||||+||+++.++++||+|||+++...
T Consensus 89 ~e~~~gg~L~~~l~~~----~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~ 161 (345)
T 3a8x_A 89 IEYVNGGDLMFHMQRQ----RKLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGL 161 (345)
T ss_dssp ECCCCSCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCGGGCBCSC
T ss_pred EeCCCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCCCEEEEecccccccc
Confidence 9999999999999764 4689999999999999999999999 99999999999999999999999999998643
Q ss_pred CCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcc--cHHHHHHHHHhhcccccc
Q 035998 897 SPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSR--DLISWVIRMRQENRESEV 974 (1020)
Q Consensus 897 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 974 (1020)
... .......||+.|+|||++.+..++.++||||+||++|||++|+.||......... ............... ..
T Consensus 162 ~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~i~~~~~-~~ 238 (345)
T 3a8x_A 162 RPG--DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQI-RI 238 (345)
T ss_dssp CTT--CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHHHHHHHHCCC-CC
T ss_pred CCC--CcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHHHHHHHcCCC-CC
Confidence 222 2334568999999999999999999999999999999999999999753322111 111111111111111 00
Q ss_pred cCccccCccCHHHHHHHHHHHhhccCCCCCCCCCH------HHHHH
Q 035998 975 LDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTT------QQLVS 1014 (1020)
Q Consensus 975 ~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~------~evl~ 1014 (1020)
| ......+.+++.+||+.||.+||++ +|+++
T Consensus 239 --p-------~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~~i~~ 275 (345)
T 3a8x_A 239 --P-------RSLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQG 275 (345)
T ss_dssp --C-------TTSCHHHHHHHHHHTCSSTTTSTTCCTTTHHHHHHT
T ss_pred --C-------CCCCHHHHHHHHHHhcCCHhHCCCCCCcCCHHHHhc
Confidence 1 1112357899999999999999995 56654
No 107
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=100.00 E-value=1.4e-38 Score=361.89 Aligned_cols=252 Identities=21% Similarity=0.328 Sum_probs=206.8
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEEEe
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIYSF 819 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 819 (1020)
.++|++.+.||+|+||.||+|... +++.||+|++..........+.+|++++++++||||+++++++.+....++||||
T Consensus 50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E~ 129 (387)
T 1kob_A 50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEF 129 (387)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEEC
T ss_pred ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEEc
Confidence 357999999999999999999865 6889999999876655566789999999999999999999999999999999999
Q ss_pred ccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcC--CCCeEEeeccccccccC
Q 035998 820 MENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDG--NFGAHLADFGLARLILS 897 (1020)
Q Consensus 820 ~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~--~~~~kl~Dfg~~~~~~~ 897 (1020)
+++|+|.+++... ...+++..++.++.||+.||+|||+. +|+||||||+||+++. ++.+||+|||+++....
T Consensus 130 ~~gg~L~~~l~~~---~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~ 203 (387)
T 1kob_A 130 LSGGELFDRIAAE---DYKMSEAEVINYMRQACEGLKHMHEH---SIVHLDIKPENIMCETKKASSVKIIDFGLATKLNP 203 (387)
T ss_dssp CCCCBHHHHTTCT---TCCBCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSTTCCCEEECCCTTCEECCT
T ss_pred CCCCcHHHHHHhh---cCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccchHHeEEecCCCCceEEEecccceecCC
Confidence 9999999988753 34689999999999999999999999 9999999999999974 57899999999987643
Q ss_pred CCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccccccCc
Q 035998 898 PYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVLDP 977 (1020)
Q Consensus 898 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 977 (1020)
. .......||+.|+|||++.+..++.++||||+||++|||++|+.||..... ......+..... ..++
T Consensus 204 ~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~------~~~~~~i~~~~~---~~~~ 271 (387)
T 1kob_A 204 D---EIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDD------LETLQNVKRCDW---EFDE 271 (387)
T ss_dssp T---SCEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSH------HHHHHHHHHCCC---CCCS
T ss_pred C---cceeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCH------HHHHHHHHhCCC---CCCc
Confidence 2 223345789999999999999999999999999999999999999975321 111122211111 0111
Q ss_pred cccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 978 FIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 978 ~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
..... ....+.+++.+||+.||++|||++|+++
T Consensus 272 ~~~~~----~s~~~~~li~~~L~~dP~~Rpt~~ell~ 304 (387)
T 1kob_A 272 DAFSS----VSPEAKDFIKNLLQKEPRKRLTVHDALE 304 (387)
T ss_dssp STTTT----SCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred ccccc----CCHHHHHHHHHHcCCChhHCcCHHHHhh
Confidence 11111 2236889999999999999999999986
No 108
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=100.00 E-value=7.8e-39 Score=349.58 Aligned_cols=255 Identities=26% Similarity=0.374 Sum_probs=196.0
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeCC----CCEEEEEEecCCc-hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLPD----GRNVAIKRLSGDC-GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLL 815 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~~----~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 815 (1020)
.++|++.+.||+|+||.||+|.... +..||+|++.... ....+.+.+|+.++++++||||+++++++. .+..++
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~l 92 (281)
T 1mp8_A 14 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVWI 92 (281)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSCEE
T ss_pred hHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEc-cCccEE
Confidence 4678999999999999999998643 4569999987643 334567899999999999999999999984 567899
Q ss_pred EEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccc
Q 035998 816 IYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLI 895 (1020)
Q Consensus 816 v~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~ 895 (1020)
||||+++++|.+++... ...+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++..
T Consensus 93 v~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~ 166 (281)
T 1mp8_A 93 IMELCTLGELRSFLQVR---KYSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYM 166 (281)
T ss_dssp EEECCTTEEHHHHHHHT---TTTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECC-------
T ss_pred EEecCCCCCHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHHhC---CeecccccHHHEEECCCCCEEECcccccccc
Confidence 99999999999999764 24689999999999999999999999 9999999999999999999999999999876
Q ss_pred cCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHc-CCCCCCCCCCCCcccHHHHHHHHHhhcccccc
Q 035998 896 LSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLT-GKRPMDMCKPKGSRDLISWVIRMRQENRESEV 974 (1020)
Q Consensus 896 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 974 (1020)
.... ........+++.|+|||++.+..++.++||||+|+++|||++ |..||...... +.... +...... .
T Consensus 167 ~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~~---~~~~~---i~~~~~~-~- 237 (281)
T 1mp8_A 167 EDST-YYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNN---DVIGR---IENGERL-P- 237 (281)
T ss_dssp -------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGG---GHHHH---HHTTCCC-C-
T ss_pred Cccc-ccccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCHH---HHHHH---HHcCCCC-C-
Confidence 4322 122233456789999999988899999999999999999997 99999754332 22211 1111110 0
Q ss_pred cCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 975 LDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 975 ~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
.+......+.+++.+||+.||++||+++|+++.|+++
T Consensus 238 --------~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~ 274 (281)
T 1mp8_A 238 --------MPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTI 274 (281)
T ss_dssp --------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred --------CCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 0111224688999999999999999999999999876
No 109
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=100.00 E-value=6.5e-38 Score=347.38 Aligned_cols=244 Identities=26% Similarity=0.349 Sum_probs=202.9
Q ss_pred cCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCch---hhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEE
Q 035998 742 NNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCG---QMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIY 817 (1020)
Q Consensus 742 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 817 (1020)
++|++.+.||+|+||.||+|+.. +|+.||+|++..... ...+.+.+|+.+++.++||||+++++++.+....++||
T Consensus 6 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv~ 85 (318)
T 1fot_A 6 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIM 85 (318)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEE
T ss_pred HHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEEE
Confidence 57899999999999999999875 689999999975421 23456788999999999999999999999999999999
Q ss_pred EeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccC
Q 035998 818 SFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILS 897 (1020)
Q Consensus 818 e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~ 897 (1020)
||+++|+|.+++... ..+++..+..++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+++....
T Consensus 86 e~~~gg~L~~~l~~~----~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~ 158 (318)
T 1fot_A 86 DYIEGGELFSLLRKS----QRFPNPVAKFYAAEVCLALEYLHSK---DIIYRDLKPENILLDKNGHIKITDFGFAKYVPD 158 (318)
T ss_dssp CCCCSCBHHHHHHHT----SSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECTTSCEEECCCSSCEECSS
T ss_pred eCCCCCCHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChheEEEcCCCCEEEeecCcceecCC
Confidence 999999999999864 4689999999999999999999999 999999999999999999999999999987532
Q ss_pred CCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccccccCc
Q 035998 898 PYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVLDP 977 (1020)
Q Consensus 898 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 977 (1020)
......||+.|+|||++.+..++.++||||+||++|||++|+.||..... ......+..... . -|
T Consensus 159 -----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~------~~~~~~i~~~~~--~--~p 223 (318)
T 1fot_A 159 -----VTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNT------MKTYEKILNAEL--R--FP 223 (318)
T ss_dssp -----CBCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSH------HHHHHHHHHCCC--C--CC
T ss_pred -----ccccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCH------HHHHHHHHhCCC--C--CC
Confidence 22346799999999999999999999999999999999999999964321 111112211110 0 01
Q ss_pred cccCccCHHHHHHHHHHHhhccCCCCCCCC-----CHHHHHH
Q 035998 978 FIYDKQHDKEMLRVLDIACLCLSESPKVRP-----TTQQLVS 1014 (1020)
Q Consensus 978 ~~~~~~~~~~~~~l~~li~~cl~~dP~~RP-----s~~evl~ 1014 (1020)
......+.+++.+|++.||++|| +++|+++
T Consensus 224 -------~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~~i~~ 258 (318)
T 1fot_A 224 -------PFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKN 258 (318)
T ss_dssp -------TTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHT
T ss_pred -------CCCCHHHHHHHHHHhccCHHHcCCCcCCCHHHHhc
Confidence 11123578999999999999999 8898875
No 110
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=100.00 E-value=2.8e-38 Score=346.38 Aligned_cols=253 Identities=32% Similarity=0.513 Sum_probs=203.0
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCchhh-------HHHHHHHHHHHHHcCCCccceEeeEEeccCc
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCGQM-------EREFRAEVEALSRAQHPNLVHLQGYCMHKND 812 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~-------~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 812 (1020)
.++|++.+.||+|+||.||+|+.. +++.||||++....... .+.+.+|++++++++||||+++++++.+..
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~- 96 (287)
T 4f0f_A 18 DNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP- 96 (287)
T ss_dssp STTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT-
T ss_pred hccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC-
Confidence 467899999999999999999874 78999999986543211 157889999999999999999999986554
Q ss_pred eEEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCC--eEecCCCCCCEEEcCCCC-----eE
Q 035998 813 RLLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPH--ILHRDIKSSNILLDGNFG-----AH 885 (1020)
Q Consensus 813 ~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~--ivH~Dlkp~NIll~~~~~-----~k 885 (1020)
++||||+++|+|.+++... ...+++..++.++.|++.||+|||++ + |+||||||+||+++.++. +|
T Consensus 97 -~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~~~l~~~l~~lH~~---~~~ivH~dikp~Nil~~~~~~~~~~~~k 169 (287)
T 4f0f_A 97 -RMVMEFVPCGDLYHRLLDK---AHPIKWSVKLRLMLDIALGIEYMQNQ---NPPIVHRDLRSPNIFLQSLDENAPVCAK 169 (287)
T ss_dssp -EEEEECCTTCBHHHHHHCT---TSCCCHHHHHHHHHHHHHHHHHHHTS---SSCCBCSCCSGGGEEESCCCTTCSCCEE
T ss_pred -eEEEEecCCCCHHHHHhcc---cCCccHHHHHHHHHHHHHHHHHHHhC---CCCeecCCCCcceEEEeccCCCCceeEE
Confidence 7999999999998888653 34689999999999999999999999 8 999999999999988776 99
Q ss_pred EeeccccccccCCCCcccccccccccCccCcccc--CCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHH
Q 035998 886 LADFGLARLILSPYDTHVTTDLVGTLGYIPPEYG--QASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVI 963 (1020)
Q Consensus 886 l~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~--~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~ 963 (1020)
|+|||+++.... ......||+.|+|||++ ....++.++||||+|+++|||++|+.||....... .....
T Consensus 170 l~Dfg~~~~~~~-----~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~----~~~~~ 240 (287)
T 4f0f_A 170 VADFGLSQQSVH-----SVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGK----IKFIN 240 (287)
T ss_dssp ECCCTTCBCCSS-----CEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCH----HHHHH
T ss_pred eCCCCccccccc-----cccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccH----HHHHH
Confidence 999999975422 23446789999999998 45567899999999999999999999997543321 11122
Q ss_pred HHHhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 964 RMRQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 964 ~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
.......... . +......+.+++.+||+.||++|||++|+++.|+++
T Consensus 241 ~~~~~~~~~~-----~----~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l 287 (287)
T 4f0f_A 241 MIREEGLRPT-----I----PEDCPPRLRNVIELCWSGDPKKRPHFSYIVKELSEL 287 (287)
T ss_dssp HHHHSCCCCC-----C----CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTC
T ss_pred HHhccCCCCC-----C----CcccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhC
Confidence 2222111111 1 111224688999999999999999999999999875
No 111
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=7.6e-39 Score=346.88 Aligned_cols=255 Identities=29% Similarity=0.459 Sum_probs=209.7
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeCCCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEEEec
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLPDGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIYSFM 820 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 820 (1020)
.++|++.+.||+|+||.||+|...+++.||+|++..... ..+.+.+|++++++++||||+++++++.+.+..++||||+
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 85 (267)
T 3t9t_A 7 PSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFM 85 (267)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECCC
T ss_pred hhheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeCC
Confidence 457889999999999999999998888999999986543 3467899999999999999999999999999999999999
Q ss_pred cCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccCCCC
Q 035998 821 ENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILSPYD 900 (1020)
Q Consensus 821 ~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~ 900 (1020)
++++|.+++... ...+++..++.++.|++.||+|||++ +++||||||+||+++.++.+||+|||+++..... .
T Consensus 86 ~~~~L~~~~~~~---~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~-~ 158 (267)
T 3t9t_A 86 EHGCLSDYLRTQ---RGLFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDD-Q 158 (267)
T ss_dssp TTCBHHHHHHHT---TTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCH-H
T ss_pred CCCcHHHHHhhC---cccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEECCCCCEEEcccccccccccc-c
Confidence 999999999764 24689999999999999999999999 9999999999999999999999999999875321 1
Q ss_pred cccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHc-CCCCCCCCCCCCcccHHHHHHHHHhhcccccccCccc
Q 035998 901 THVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLT-GKRPMDMCKPKGSRDLISWVIRMRQENRESEVLDPFI 979 (1020)
Q Consensus 901 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 979 (1020)
........+++.|+|||+..+..++.++||||+|+++|||++ |+.||..... ............ ...+
T Consensus 159 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~------~~~~~~i~~~~~---~~~~-- 227 (267)
T 3t9t_A 159 YTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSN------SEVVEDISTGFR---LYKP-- 227 (267)
T ss_dssp HHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH------HHHHHHHHTTCC---CCCC--
T ss_pred ccccccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCCH------HHHHHHHhcCCc---CCCC--
Confidence 112223456788999999988899999999999999999999 8999974321 111112211111 0011
Q ss_pred cCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 980 YDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 980 ~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
......+.+++.+||+.||++||+++++++.|+++
T Consensus 228 -----~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l 262 (267)
T 3t9t_A 228 -----RLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEI 262 (267)
T ss_dssp -----TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred -----ccCcHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 11123588999999999999999999999999876
No 112
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=100.00 E-value=2.6e-38 Score=347.00 Aligned_cols=251 Identities=20% Similarity=0.349 Sum_probs=203.2
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeCC-C-------CEEEEEEecCCchhhHHHHHHHHHHHHHcCCCccceEeeEEeccCc
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLPD-G-------RNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNLVHLQGYCMHKND 812 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~~-~-------~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 812 (1020)
.++|++.+.||+|+||.||+|+... + ..||+|++........+.+.+|++++++++||||+++++++.+.+.
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 86 (289)
T 4fvq_A 7 NEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDE 86 (289)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTTC
T ss_pred hhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCCC
Confidence 3578899999999999999998642 3 4799999977666667789999999999999999999999999999
Q ss_pred eEEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCC--------e
Q 035998 813 RLLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFG--------A 884 (1020)
Q Consensus 813 ~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~--------~ 884 (1020)
.++||||+++++|.+++... ...+++..++.++.|++.||+|||++ +|+||||||+||+++.++. +
T Consensus 87 ~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~~~~~ 160 (289)
T 4fvq_A 87 NILVQEFVKFGSLDTYLKKN---KNCINILWKLEVAKQLAAAMHFLEEN---TLIHGNVCAKNILLIREEDRKTGNPPFI 160 (289)
T ss_dssp CEEEEECCTTCBHHHHHHHT---GGGCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEEECCBGGGTBCCEE
T ss_pred CEEEEECCCCCCHHHHHHhC---CCCCCHHHHHHHHHHHHHHHHHHhhC---CeECCCcCcceEEEecCCccccccccee
Confidence 99999999999999999864 23489999999999999999999999 9999999999999998887 9
Q ss_pred EEeeccccccccCCCCcccccccccccCccCccccCC-CCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHH
Q 035998 885 HLADFGLARLILSPYDTHVTTDLVGTLGYIPPEYGQA-SVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVI 963 (1020)
Q Consensus 885 kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~ 963 (1020)
||+|||+++.... .....|++.|+|||++.+ ..++.++||||+|+++|||++|..|+..... ......
T Consensus 161 kl~Dfg~~~~~~~------~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~-----~~~~~~ 229 (289)
T 4fvq_A 161 KLSDPGISITVLP------KDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALD-----SQRKLQ 229 (289)
T ss_dssp EECCCCSCTTTSC------HHHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSC-----HHHHHH
T ss_pred eeccCcccccccC------ccccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccc-----hHHHHH
Confidence 9999999875422 123457889999998877 7799999999999999999996554432111 111111
Q ss_pred HHHhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhcC
Q 035998 964 RMRQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSII 1020 (1020)
Q Consensus 964 ~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~il 1020 (1020)
............ ...+.+++.+||+.||++|||++|+++.|++++
T Consensus 230 ~~~~~~~~~~~~------------~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~l~ 274 (289)
T 4fvq_A 230 FYEDRHQLPAPK------------AAELANLINNCMDYEPDHRPSFRAIIRDLNSLF 274 (289)
T ss_dssp HHHTTCCCCCCS------------SCTTHHHHHHHSCSSGGGSCCHHHHHHHHHTCC
T ss_pred HhhccCCCCCCC------------CHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhc
Confidence 111111111100 124789999999999999999999999999874
No 113
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=100.00 E-value=2.7e-38 Score=353.93 Aligned_cols=250 Identities=26% Similarity=0.370 Sum_probs=203.0
Q ss_pred HhccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc---hhhHHHHHHHHHHHHHc-CCCccceEeeEEeccCce
Q 035998 739 ESTNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC---GQMEREFRAEVEALSRA-QHPNLVHLQGYCMHKNDR 813 (1020)
Q Consensus 739 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~ 813 (1020)
...++|++.+.||+|+||.||+|+.+ +++.||||++.... ....+.+..|.+++..+ +||||+++++++.+.+..
T Consensus 14 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~ 93 (345)
T 1xjd_A 14 LKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENL 93 (345)
T ss_dssp --CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEE
T ss_pred CChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEE
Confidence 34578999999999999999999975 68899999997542 12345677899999877 999999999999999999
Q ss_pred EEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccc
Q 035998 814 LLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLAR 893 (1020)
Q Consensus 814 ~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~ 893 (1020)
++||||+++|+|.+++... ..+++..+..++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+++
T Consensus 94 ~lv~E~~~gg~L~~~l~~~----~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~vkL~DFG~a~ 166 (345)
T 1xjd_A 94 FFVMEYLNGGDLMYHIQSC----HKFDLSRATFYAAEIILGLQFLHSK---GIVYRDLKLDNILLDKDGHIKIADFGMCK 166 (345)
T ss_dssp EEEEECCTTCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCB
T ss_pred EEEEeCCCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCChhhEEECCCCCEEEeEChhhh
Confidence 9999999999999999864 4689999999999999999999999 99999999999999999999999999998
Q ss_pred cccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhccccc
Q 035998 894 LILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESE 973 (1020)
Q Consensus 894 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 973 (1020)
..... ........||+.|+|||++.+..++.++||||+||++|||++|+.||..... .. ....+.....
T Consensus 167 ~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~---~~---~~~~i~~~~~--- 235 (345)
T 1xjd_A 167 ENMLG--DAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDE---EE---LFHSIRMDNP--- 235 (345)
T ss_dssp CCCCT--TCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH---HH---HHHHHHHCCC---
T ss_pred hcccC--CCcccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCCH---HH---HHHHHHhCCC---
Confidence 64321 1223456899999999999999999999999999999999999999974321 11 1111211110
Q ss_pred ccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHH-HHHH
Q 035998 974 VLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQ-QLVS 1014 (1020)
Q Consensus 974 ~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~-evl~ 1014 (1020)
..... ....+.+++.+||+.||++||++. ++++
T Consensus 236 ----~~p~~----~s~~~~~li~~lL~~dp~~R~~~~~~i~~ 269 (345)
T 1xjd_A 236 ----FYPRW----LEKEAKDLLVKLFVREPEKRLGVRGDIRQ 269 (345)
T ss_dssp ----CCCTT----SCHHHHHHHHHHSCSSGGGSBTTBSCGGG
T ss_pred ----CCCcc----cCHHHHHHHHHHhcCCHhHcCCChHHHHc
Confidence 00011 123578999999999999999987 6653
No 114
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=100.00 E-value=5.5e-38 Score=354.93 Aligned_cols=252 Identities=22% Similarity=0.321 Sum_probs=194.3
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEEEe
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIYSF 819 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 819 (1020)
.++|++.+.||+|+||.||+|+.. +++.||||++...... .+.+.+|+.++++++||||+++++++.+.+..++||||
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~ 97 (361)
T 3uc3_A 19 SDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAAI-DENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIMEY 97 (361)
T ss_dssp TTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTTS-CHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred CCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCccc-cHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEEe
Confidence 468999999999999999999875 7899999999765332 35688999999999999999999999999999999999
Q ss_pred ccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCC--eEEeeccccccccC
Q 035998 820 MENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFG--AHLADFGLARLILS 897 (1020)
Q Consensus 820 ~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~--~kl~Dfg~~~~~~~ 897 (1020)
+++|+|.+++... ..+++..++.++.|++.||+|||++ +|+||||||+||+++.++. +||+|||+++....
T Consensus 98 ~~~~~L~~~l~~~----~~~~~~~~~~i~~ql~~~L~~LH~~---~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~ 170 (361)
T 3uc3_A 98 ASGGELYERICNA----GRFSEDEARFFFQQLLSGVSYCHSM---QICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVL 170 (361)
T ss_dssp CCSCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHHHT---TCCSCCCCGGGEEECSSSSCCEEECCCCCC-----
T ss_pred CCCCCHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCceEEEeecCccccccc
Confidence 9999999998764 4689999999999999999999999 9999999999999987765 99999999975422
Q ss_pred CCCcccccccccccCccCccccCCCCCCch-hhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccccccC
Q 035998 898 PYDTHVTTDLVGTLGYIPPEYGQASVATYK-GDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVLD 976 (1020)
Q Consensus 898 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~-~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 976 (1020)
........||+.|+|||++.+..++.+ +||||+||++|+|++|+.||........ ............. ...+
T Consensus 171 ---~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~--~~~~~~~~~~~~~--~~~~ 243 (361)
T 3uc3_A 171 ---HSQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRD--YRKTIQRILSVKY--SIPD 243 (361)
T ss_dssp -------------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CCC--HHHHHHHHHTTCC--CCCT
T ss_pred ---cCCCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHHH--HHHHHHHHhcCCC--CCCC
Confidence 122344579999999999887777655 9999999999999999999975443322 2222222221111 0000
Q ss_pred ccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 977 PFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 977 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
. ......+.+++.+||+.||++|||++|+++
T Consensus 244 ~-------~~~s~~~~~li~~~L~~dP~~Rps~~ell~ 274 (361)
T 3uc3_A 244 D-------IRISPECCHLISRIFVADPATRISIPEIKT 274 (361)
T ss_dssp T-------SCCCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred c-------CCCCHHHHHHHHHHccCChhHCcCHHHHHh
Confidence 0 011235789999999999999999999987
No 115
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=100.00 E-value=7.2e-39 Score=366.09 Aligned_cols=259 Identities=22% Similarity=0.252 Sum_probs=206.2
Q ss_pred HHHHHHhccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCch---hhHHHHHHHHHHHHHcCCCccceEeeEEec
Q 035998 734 IDDILESTNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCG---QMEREFRAEVEALSRAQHPNLVHLQGYCMH 809 (1020)
Q Consensus 734 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l~~~~~~ 809 (1020)
+.++....++|++.+.||+|+||.||+|+.+ +++.||+|++.+... ...+.+.+|+++++.++||||+++++++.+
T Consensus 61 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~ 140 (410)
T 3v8s_A 61 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQD 140 (410)
T ss_dssp HHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred HHhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEE
Confidence 3455556789999999999999999999875 588999999865321 112347889999999999999999999999
Q ss_pred cCceEEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeec
Q 035998 810 KNDRLLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADF 889 (1020)
Q Consensus 810 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Df 889 (1020)
.+..|+||||+++|+|.+++... .+++..+..++.||+.||+|||++ +|+||||||+||+++.++++||+||
T Consensus 141 ~~~~~lV~E~~~gg~L~~~l~~~-----~~~e~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl~~~g~ikL~DF 212 (410)
T 3v8s_A 141 DRYLYMVMEYMPGGDLVNLMSNY-----DVPEKWARFYTAEVVLALDAIHSM---GFIHRDVKPDNMLLDKSGHLKLADF 212 (410)
T ss_dssp SSEEEEEECCCTTEEHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCC
T ss_pred CCEEEEEEeCCCCCcHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeeECCCCCEEEecc
Confidence 99999999999999999998753 589999999999999999999999 9999999999999999999999999
Q ss_pred cccccccCCCCcccccccccccCccCccccCCCC----CCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHH
Q 035998 890 GLARLILSPYDTHVTTDLVGTLGYIPPEYGQASV----ATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRM 965 (1020)
Q Consensus 890 g~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~----~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~ 965 (1020)
|+++...... .......+||+.|+|||++.+.. ++.++||||+||++|||++|+.||...... .........
T Consensus 213 G~a~~~~~~~-~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~---~~~~~i~~~ 288 (410)
T 3v8s_A 213 GTCMKMNKEG-MVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLV---GTYSKIMNH 288 (410)
T ss_dssp TTCEECCTTS-EEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCSSHH---HHHHHHHTH
T ss_pred ceeEeeccCC-cccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCCChh---hHHHHHHhc
Confidence 9998764321 22234568999999999887655 789999999999999999999999743221 111111111
Q ss_pred HhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCC--CCCHHHHHH
Q 035998 966 RQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKV--RPTTQQLVS 1014 (1020)
Q Consensus 966 ~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~--RPs~~evl~ 1014 (1020)
......+. . . .....+.+++.+|++.+|.+ ||+++||++
T Consensus 289 ~~~~~~p~---~---~----~~s~~~~~li~~lL~~~~~rlgR~~~~ei~~ 329 (410)
T 3v8s_A 289 KNSLTFPD---D---N----DISKEAKNLICAFLTDREVRLGRNGVEEIKR 329 (410)
T ss_dssp HHHCCCCT---T---C----CCCHHHHHHHHHHSSCGGGCTTSSCHHHHHT
T ss_pred cccccCCC---c---c----cccHHHHHHHHHHccChhhhCCCCCHHHHhc
Confidence 11111110 0 0 11235789999999999988 999999986
No 116
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=100.00 E-value=3e-38 Score=346.38 Aligned_cols=260 Identities=28% Similarity=0.481 Sum_probs=195.5
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeCCCCEEEEEEecCCc--hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEEE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLPDGRNVAIKRLSGDC--GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIYS 818 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 818 (1020)
.++|++.+.||+|+||.||+|+.. ..||||++.... ....+.+.+|++++++++||||+++++++ .....++|||
T Consensus 23 ~~~y~~~~~lG~G~~g~Vy~~~~~--~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-~~~~~~lv~e 99 (289)
T 3og7_A 23 DGQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAPQLAIVTQ 99 (289)
T ss_dssp TTSCEEEEEEEECSSEEEEEEESS--SEEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-CSSSCEEEEE
T ss_pred ccceeeeeEecCCCCeEEEEEEEc--CceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeec-cCCccEEEEE
Confidence 467999999999999999999864 469999987553 33456789999999999999999999965 5567899999
Q ss_pred eccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccCC
Q 035998 819 FMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILSP 898 (1020)
Q Consensus 819 ~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~ 898 (1020)
|+++++|.+++... ...+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++.....
T Consensus 100 ~~~~~~L~~~l~~~---~~~~~~~~~~~i~~qi~~~L~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 173 (289)
T 3og7_A 100 WCEGSSLYHHLHAS---ETKFEMKKLIDIARQTARGMDYLHAK---SIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRW 173 (289)
T ss_dssp CCCEEEHHHHHTTC------CCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTTEEEECCCC--------
T ss_pred ecCCCcHHHHHhhc---cCCCCHHHHHHHHHHHHHHHHHHHhC---CcccccCccceEEECCCCCEEEccceeccccccc
Confidence 99999999998653 35689999999999999999999999 9999999999999999999999999999865433
Q ss_pred CCcccccccccccCccCccccC---CCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhccccccc
Q 035998 899 YDTHVTTDLVGTLGYIPPEYGQ---ASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVL 975 (1020)
Q Consensus 899 ~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 975 (1020)
..........||+.|+|||++. +..++.++||||+|+++|||++|+.||...... ..... .... .......
T Consensus 174 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~--~~~~~---~~~~-~~~~~~~ 247 (289)
T 3og7_A 174 SGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNR--DQIIE---MVGR-GSLSPDL 247 (289)
T ss_dssp ----------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCH--HHHHH---HHHH-TSCCCCT
T ss_pred cccccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccchH--HHHHH---Hhcc-cccCcch
Confidence 3333334567899999999876 667899999999999999999999999754321 11111 1111 1111100
Q ss_pred CccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhcC
Q 035998 976 DPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSII 1020 (1020)
Q Consensus 976 d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~il 1020 (1020)
. .........+.+++.+||+.||.+||+++++++.|+++.
T Consensus 248 ~-----~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~l~ 287 (289)
T 3og7_A 248 S-----KVRSNCPKRMKRLMAECLKKKRDERPSFPRILAEIEELA 287 (289)
T ss_dssp T-----SSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTT
T ss_pred h-----hccccCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHh
Confidence 0 011122346889999999999999999999999999873
No 117
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=100.00 E-value=3.8e-38 Score=350.54 Aligned_cols=270 Identities=27% Similarity=0.416 Sum_probs=215.0
Q ss_pred cHHHHHHhccCCCcCCeeeccCCeEEEEEEe------CCCCEEEEEEecCCch-hhHHHHHHHHHHHHHc-CCCccceEe
Q 035998 733 SIDDILESTNNFDQANIIGCGGFGLVYRATL------PDGRNVAIKRLSGDCG-QMEREFRAEVEALSRA-QHPNLVHLQ 804 (1020)
Q Consensus 733 ~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~------~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l-~h~niv~l~ 804 (1020)
...++....++|++.+.||+|+||.||+|++ .+++.||||++..... ...+.+.+|+++++++ +||||++++
T Consensus 18 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~ 97 (316)
T 2xir_A 18 DASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLL 97 (316)
T ss_dssp CHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred cccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeEE
Confidence 3444555678899999999999999999974 3567899999986543 3346789999999999 799999999
Q ss_pred eEEeccC-ceEEEEEeccCCChhhhhhhcCCC------------CCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCC
Q 035998 805 GYCMHKN-DRLLIYSFMENGSLDYWLHEKLDG------------PSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDI 871 (1020)
Q Consensus 805 ~~~~~~~-~~~lv~e~~~~g~L~~~l~~~~~~------------~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dl 871 (1020)
+++...+ ..++||||+++++|.+++...... ...+++..++.++.|++.||+|||+. +|+||||
T Consensus 98 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~H~di 174 (316)
T 2xir_A 98 GACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDL 174 (316)
T ss_dssp EEECCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHT---TCCCSCC
T ss_pred EEEecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhC---CcccccC
Confidence 9988755 489999999999999999865321 22378999999999999999999999 9999999
Q ss_pred CCCCEEEcCCCCeEEeeccccccccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHc-CCCCCCCC
Q 035998 872 KSSNILLDGNFGAHLADFGLARLILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLT-GKRPMDMC 950 (1020)
Q Consensus 872 kp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-g~~pf~~~ 950 (1020)
||+||+++.++.+||+|||+++...............+|+.|+|||++.+..++.++||||+|+++|||+| |..||...
T Consensus 175 kp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~ 254 (316)
T 2xir_A 175 AARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGV 254 (316)
T ss_dssp SGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred ccceEEECCCCCEEECCCccccccccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCccc
Confidence 99999999999999999999987654433333445667889999999988999999999999999999998 99999754
Q ss_pred CCCCcccHHHHHHHHHhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhcC
Q 035998 951 KPKGSRDLISWVIRMRQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSII 1020 (1020)
Q Consensus 951 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~il 1020 (1020)
.... ... ........ ... + . .....+.+++.+||+.||.+|||++|+++.|++++
T Consensus 255 ~~~~--~~~---~~~~~~~~-~~~--~---~----~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~ 309 (316)
T 2xir_A 255 KIDE--EFC---RRLKEGTR-MRA--P---D----YTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLL 309 (316)
T ss_dssp CCSH--HHH---HHHHHTCC-CCC--C---T----TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred chhH--HHH---HHhccCcc-CCC--C---C----CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 3221 111 11111111 000 0 1 11235889999999999999999999999998763
No 118
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=100.00 E-value=3.2e-38 Score=358.09 Aligned_cols=266 Identities=18% Similarity=0.198 Sum_probs=202.5
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeCC------CCEEEEEEecCCchhhH-----------HHHHHHHHHHHHcCCCccceE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLPD------GRNVAIKRLSGDCGQME-----------REFRAEVEALSRAQHPNLVHL 803 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~~------~~~vavK~~~~~~~~~~-----------~~~~~E~~~l~~l~h~niv~l 803 (1020)
.++|++.+.||+|+||.||+|.+.. ++.||||++........ ..+..|+..++.++||||+++
T Consensus 34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~ 113 (364)
T 3op5_A 34 AAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKY 113 (364)
T ss_dssp CCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCE
T ss_pred CCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeE
Confidence 4679999999999999999998754 47899999876643211 123345556667789999999
Q ss_pred eeEEecc----CceEEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEc
Q 035998 804 QGYCMHK----NDRLLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLD 879 (1020)
Q Consensus 804 ~~~~~~~----~~~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~ 879 (1020)
++++... ...++||||+ +++|.+++... ...+++..++.++.||+.||+|||++ +|+||||||+||+++
T Consensus 114 ~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~---~~~l~~~~~~~i~~qi~~~l~~lH~~---~iiHrDlkp~Nill~ 186 (364)
T 3op5_A 114 WGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEAN---AKRFSRKTVLQLSLRILDILEYIHEH---EYVHGDIKASNLLLN 186 (364)
T ss_dssp EEEEEEEETTEEEEEEEEECE-EEEHHHHHHHT---TSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEE
T ss_pred EeeeeeccCCcceEEEEEeCC-CCCHHHHHHhc---cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEEecCCHHHEEEe
Confidence 9999865 4478999999 99999999763 34689999999999999999999999 999999999999999
Q ss_pred --CCCCeEEeeccccccccCCCCc-----ccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCC
Q 035998 880 --GNFGAHLADFGLARLILSPYDT-----HVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKP 952 (1020)
Q Consensus 880 --~~~~~kl~Dfg~~~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~ 952 (1020)
.++.+||+|||+++........ .......||+.|+|||++.+..++.++|||||||++|||+||+.||.....
T Consensus 187 ~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~ 266 (364)
T 3op5_A 187 YKNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLK 266 (364)
T ss_dssp SSCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTT
T ss_pred cCCCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCcccccc
Confidence 8899999999999876432111 111335599999999999999999999999999999999999999975332
Q ss_pred CCcccHHHHHHHHHhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 953 KGSRDLISWVIRMRQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 953 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
.. ........... .......++...... ....+.+++..||+.||.+||+++++++.|+++
T Consensus 267 ~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~li~~cl~~~p~~RP~~~~l~~~l~~~ 327 (364)
T 3op5_A 267 DP--KYVRDSKIRYR-ENIASLMDKCFPAAN---APGEIAKYMETVKLLDYTEKPLYENLRDILLQG 327 (364)
T ss_dssp CH--HHHHHHHHHHH-HCHHHHHHHHSCTTC---CCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHH
T ss_pred CH--HHHHHHHHHhh-hhHHHHHHHhccccc---CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence 21 22211111111 111122222111111 123688999999999999999999999999876
No 119
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.3e-38 Score=355.46 Aligned_cols=256 Identities=25% Similarity=0.411 Sum_probs=198.6
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCE----EEEEEecCCc-hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRN----VAIKRLSGDC-GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRL 814 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~----vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 814 (1020)
.++|++.+.||+|+||.||+|++. +++. ||+|.+.... ....+.+.+|++++++++||||+++++++.... .+
T Consensus 14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~~ 92 (327)
T 3lzb_A 14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQ 92 (327)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-EE
T ss_pred HhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-ce
Confidence 367999999999999999999864 4443 5778775432 344678899999999999999999999998654 78
Q ss_pred EEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeecccccc
Q 035998 815 LIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARL 894 (1020)
Q Consensus 815 lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~ 894 (1020)
+|+||+.+|+|.+++... ...+++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++.
T Consensus 93 ~v~~~~~~g~L~~~l~~~---~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~ 166 (327)
T 3lzb_A 93 LITQLMPFGCLLDYVREH---KDNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKL 166 (327)
T ss_dssp EEECCCSSCBHHHHHHHT---TTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECCTTC---
T ss_pred EEEEecCCCcHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHhhC---CCcCCCCCHHHEEEcCCCCEEEccCcceeE
Confidence 999999999999999864 34689999999999999999999999 999999999999999999999999999987
Q ss_pred ccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHc-CCCCCCCCCCCCcccHHHHHHHHHhhccccc
Q 035998 895 ILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLT-GKRPMDMCKPKGSRDLISWVIRMRQENRESE 973 (1020)
Q Consensus 895 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 973 (1020)
..............+|+.|+|||++.+..++.++||||+|+++|||++ |+.||....... .... ........
T Consensus 167 ~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~---~~~~---~~~~~~~~- 239 (327)
T 3lzb_A 167 LGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASE---ISSI---LEKGERLP- 239 (327)
T ss_dssp -------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGG---HHHH---HHTTCCCC-
T ss_pred ccCccccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCHHH---HHHH---HHcCCCCC-
Confidence 654433333344567889999999999999999999999999999999 999997543322 1111 11111100
Q ss_pred ccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 974 VLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 974 ~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
.+......+.+++.+||+.||.+||+++|+++.|+++
T Consensus 240 ---------~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~ 276 (327)
T 3lzb_A 240 ---------QPPICTIDVYMIMRKCWMIDADSRPKFRELIIEFSKM 276 (327)
T ss_dssp ---------CCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred ---------CCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence 0111223588999999999999999999999999875
No 120
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=100.00 E-value=6.1e-39 Score=374.11 Aligned_cols=257 Identities=27% Similarity=0.408 Sum_probs=204.2
Q ss_pred hccCCCcCCeeeccCCeEEEEEEeCCCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEEEe
Q 035998 740 STNNFDQANIIGCGGFGLVYRATLPDGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIYSF 819 (1020)
Q Consensus 740 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 819 (1020)
..++|++.+.||+|+||.||+|.++++..||||++..... ..+.+.+|++++++++||||+++++++.+ +..++||||
T Consensus 182 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~iv~e~ 259 (452)
T 1fmk_A 182 PRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEY 259 (452)
T ss_dssp CGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECC
T ss_pred ChhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEcC-CceEEEehh
Confidence 3467888999999999999999998888899999986542 35678999999999999999999999876 678999999
Q ss_pred ccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccCCC
Q 035998 820 MENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILSPY 899 (1020)
Q Consensus 820 ~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~ 899 (1020)
+++|+|.+++.... ...+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++......
T Consensus 260 ~~~gsL~~~l~~~~--~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~ 334 (452)
T 1fmk_A 260 MSKGSLLDFLKGET--GKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 334 (452)
T ss_dssp CTTCBHHHHHSHHH--HTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCCTTC------
T ss_pred hcCCCHHHHHHhcC--CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEECCCCCEEECCCccceecCCCc
Confidence 99999999997531 23588999999999999999999999 99999999999999999999999999998764321
Q ss_pred CcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHc-CCCCCCCCCCCCcccHHHHHHHHHhhcccccccCcc
Q 035998 900 DTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLT-GKRPMDMCKPKGSRDLISWVIRMRQENRESEVLDPF 978 (1020)
Q Consensus 900 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 978 (1020)
........+++.|+|||++.+..++.++||||||+++|||++ |+.||...... +. ...........
T Consensus 335 -~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~---~~---~~~i~~~~~~~------ 401 (452)
T 1fmk_A 335 -YTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNR---EV---LDQVERGYRMP------ 401 (452)
T ss_dssp ---------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHH---HH---HHHHHTTCCCC------
T ss_pred -eecccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCHH---HH---HHHHHcCCCCC------
Confidence 122233456789999999988899999999999999999999 99999754321 11 11111111110
Q ss_pred ccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhcC
Q 035998 979 IYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSII 1020 (1020)
Q Consensus 979 ~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~il 1020 (1020)
.+......+.+++.+||+.||++|||++++++.|++++
T Consensus 402 ----~~~~~~~~l~~li~~cl~~dP~~Rpt~~~l~~~L~~~~ 439 (452)
T 1fmk_A 402 ----CPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYF 439 (452)
T ss_dssp ----CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTT
T ss_pred ----CCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHh
Confidence 11122346889999999999999999999999999863
No 121
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=100.00 E-value=9.1e-38 Score=343.16 Aligned_cols=262 Identities=24% Similarity=0.322 Sum_probs=201.1
Q ss_pred cCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc--hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEEE
Q 035998 742 NNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC--GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIYS 818 (1020)
Q Consensus 742 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 818 (1020)
++|++.+.||+|+||+||+|+.. +++.||||++.... ....+.+.+|++++++++||||+++++++.+.+..++|||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 81 (292)
T 3o0g_A 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE 81 (292)
T ss_dssp CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEe
Confidence 57899999999999999999875 68999999997543 2334678899999999999999999999999999999999
Q ss_pred eccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccCC
Q 035998 819 FMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILSP 898 (1020)
Q Consensus 819 ~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~ 898 (1020)
|+++ ++.+++... ...+++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++....+
T Consensus 82 ~~~~-~l~~~~~~~---~~~l~~~~~~~~~~ql~~~l~~lH~~---~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~ 154 (292)
T 3o0g_A 82 FCDQ-DLKKYFDSC---NGDLDPEIVKSFLFQLLKGLGFCHSR---NVLHRDLKPQNLLINRNGELKLANFGLARAFGIP 154 (292)
T ss_dssp CCSE-EHHHHHHHT---TTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECCSC
T ss_pred cCCC-CHHHHHHhC---CCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeecccceecCCc
Confidence 9986 455544432 24689999999999999999999999 9999999999999999999999999999876432
Q ss_pred CCcccccccccccCccCccccCCCC-CCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhccccccc--
Q 035998 899 YDTHVTTDLVGTLGYIPPEYGQASV-ATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVL-- 975 (1020)
Q Consensus 899 ~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 975 (1020)
. .......||+.|+|||++.+.. ++.++||||+||++|||++|..||.... ...+..................
T Consensus 155 ~--~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~ 230 (292)
T 3o0g_A 155 V--RCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGN--DVDDQLKRIFRLLGTPTEEQWPSM 230 (292)
T ss_dssp C--SCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCS--SHHHHHHHHHHHHCCCCTTTCTTG
T ss_pred c--ccccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCC--CHHHHHHHHHHHhCCCChhhhhhh
Confidence 2 2234467899999999887665 8999999999999999999888864321 1222222222221111100000
Q ss_pred ----C----c-----cccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 976 ----D----P-----FIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 976 ----d----~-----~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
+ + .......+.....+.+++.+|++.||++|||++|+++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 282 (292)
T 3o0g_A 231 TKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ 282 (292)
T ss_dssp GGSTTCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred cccccccccccccCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhc
Confidence 0 0 0000111123346789999999999999999999987
No 122
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=100.00 E-value=4.5e-38 Score=360.79 Aligned_cols=273 Identities=23% Similarity=0.245 Sum_probs=212.7
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc-hhhHHHHHHHHHHHHHcCCCccceEeeEEeccC--ceEEE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC-GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKN--DRLLI 816 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~--~~~lv 816 (1020)
.++|++.+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|++++++++||||+++++++.+.. ..++|
T Consensus 8 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv 87 (396)
T 4eut_A 8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLI 87 (396)
T ss_dssp SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEE
T ss_pred CCceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEE
Confidence 357899999999999999999875 58999999997543 233466789999999999999999999998765 67999
Q ss_pred EEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEE----cCCCCeEEeecccc
Q 035998 817 YSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILL----DGNFGAHLADFGLA 892 (1020)
Q Consensus 817 ~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll----~~~~~~kl~Dfg~~ 892 (1020)
|||+++|+|.+++..... ...+++..++.++.|++.||+|||+. +|+||||||+||++ +.++.+||+|||++
T Consensus 88 ~e~~~~g~L~~~l~~~~~-~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a 163 (396)
T 4eut_A 88 MEFCPCGSLYTVLEEPSN-AYGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAA 163 (396)
T ss_dssp ECCCTTEEHHHHTTSGGG-TTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEECTTSCEEEEECCGGGC
T ss_pred EecCCCCCHHHHHHhhhc-ccCCCHHHHHHHHHHHHHHHHHHHHC---CEEECCcCHHHEEEeecCCCceeEEEecCCCc
Confidence 999999999999986532 23489999999999999999999999 99999999999999 77788999999999
Q ss_pred ccccCCCCcccccccccccCccCccccCC--------CCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcc-cHHHHHH
Q 035998 893 RLILSPYDTHVTTDLVGTLGYIPPEYGQA--------SVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSR-DLISWVI 963 (1020)
Q Consensus 893 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--------~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~-~~~~~~~ 963 (1020)
+..... .......||+.|+|||++.+ ..++.++|||||||++|||++|+.||......... ..+....
T Consensus 164 ~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~ 240 (396)
T 4eut_A 164 RELEDD---EQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKII 240 (396)
T ss_dssp EECCCG---GGSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTCHHHHHHHH
T ss_pred eEccCC---CccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccchHHHHHHHh
Confidence 876332 22334679999999998754 56788999999999999999999999754433222 2221111
Q ss_pred HHHhhccccccc-----------CccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhcC
Q 035998 964 RMRQENRESEVL-----------DPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSII 1020 (1020)
Q Consensus 964 ~~~~~~~~~~~~-----------d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~il 1020 (1020)
............ +..............+.+++.+||+.||++||+++|+++.+++++
T Consensus 241 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~~il 308 (396)
T 4eut_A 241 TGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDIL 308 (396)
T ss_dssp HSCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHH
T ss_pred cCCCcccchhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhccChhhhccHHHHHHHHHHHh
Confidence 111111100000 000111234566778899999999999999999999999988763
No 123
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=100.00 E-value=8.1e-39 Score=355.39 Aligned_cols=264 Identities=27% Similarity=0.413 Sum_probs=198.9
Q ss_pred HHHhccCCCcCCeeeccCCeEEEEEEeC----CCCEEEEEEecCCc--hhhHHHHHHHHHHHHHcCCCccceEeeEEecc
Q 035998 737 ILESTNNFDQANIIGCGGFGLVYRATLP----DGRNVAIKRLSGDC--GQMEREFRAEVEALSRAQHPNLVHLQGYCMHK 810 (1020)
Q Consensus 737 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~----~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~ 810 (1020)
+....++|++.+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|++++++++||||+++++++.+.
T Consensus 29 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~ 108 (313)
T 3brb_A 29 VVIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEM 108 (313)
T ss_dssp TBCCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC-
T ss_pred cccCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeec
Confidence 3345678999999999999999999753 34589999987543 33346789999999999999999999999875
Q ss_pred Cc-----eEEEEEeccCCChhhhhhhcC--CCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCC
Q 035998 811 ND-----RLLIYSFMENGSLDYWLHEKL--DGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFG 883 (1020)
Q Consensus 811 ~~-----~~lv~e~~~~g~L~~~l~~~~--~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~ 883 (1020)
+. .++||||+++++|.+++.... .....+++..++.++.|++.||+|||++ +|+||||||+||+++.++.
T Consensus 109 ~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dikp~NIli~~~~~ 185 (313)
T 3brb_A 109 SSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNR---NFLHRDLAARNCMLRDDMT 185 (313)
T ss_dssp ------CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTT---TCCCCCCSGGGEEECTTSC
T ss_pred cccCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCCc
Confidence 53 489999999999999985432 3345789999999999999999999999 9999999999999999999
Q ss_pred eEEeeccccccccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHc-CCCCCCCCCCCCcccHHHHH
Q 035998 884 AHLADFGLARLILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLT-GKRPMDMCKPKGSRDLISWV 962 (1020)
Q Consensus 884 ~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-g~~pf~~~~~~~~~~~~~~~ 962 (1020)
+||+|||+++...............+++.|+|||.+.+..++.++||||||+++|||++ |..||....... ....
T Consensus 186 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~---~~~~- 261 (313)
T 3brb_A 186 VCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNHE---MYDY- 261 (313)
T ss_dssp EEECSCSCC----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGG---HHHH-
T ss_pred EEEeecCcceecccccccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCHHH---HHHH-
Confidence 99999999987654332233334567889999999999999999999999999999999 889997543321 1111
Q ss_pred HHHHhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 963 IRMRQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 963 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
....... . . +......+.+++.+||+.||.+||+++++++.|+++
T Consensus 262 --~~~~~~~-~-----~----~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~l 306 (313)
T 3brb_A 262 --LLHGHRL-K-----Q----PEDCLDELYEIMYSCWRTDPLDRPTFSVLRLQLEKL 306 (313)
T ss_dssp --HHTTCCC-C-----C----BTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred --HHcCCCC-C-----C----CccccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 1111110 0 0 111223688999999999999999999999999876
No 124
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=100.00 E-value=5.9e-38 Score=346.57 Aligned_cols=263 Identities=25% Similarity=0.398 Sum_probs=206.2
Q ss_pred cCCCcCCeeeccCCeEEEEEEe-----CCCCEEEEEEecCCc-hhhHHHHHHHHHHHHHcCCCccceEeeEEecc--Cce
Q 035998 742 NNFDQANIIGCGGFGLVYRATL-----PDGRNVAIKRLSGDC-GQMEREFRAEVEALSRAQHPNLVHLQGYCMHK--NDR 813 (1020)
Q Consensus 742 ~~~~~~~~lg~G~~g~V~~~~~-----~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--~~~ 813 (1020)
++|++.+.||+|+||.||+|++ .+++.||||++.... ....+.+.+|++++++++||||+++++++.+. ...
T Consensus 21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 100 (302)
T 4e5w_A 21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGI 100 (302)
T ss_dssp GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CCE
T ss_pred hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCceE
Confidence 4588899999999999999984 368899999997543 23346789999999999999999999999876 668
Q ss_pred EEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccc
Q 035998 814 LLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLAR 893 (1020)
Q Consensus 814 ~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~ 893 (1020)
++||||+++++|.+++... ...+++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++
T Consensus 101 ~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~ 174 (302)
T 4e5w_A 101 KLIMEFLPSGSLKEYLPKN---KNKINLKQQLKYAVQICKGMDYLGSR---QYVHRDLAARNVLVESEHQVKIGDFGLTK 174 (302)
T ss_dssp EEEEECCTTCBHHHHHHHH---TTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCCTTCE
T ss_pred EEEEEeCCCCcHHHHHHhc---cccCCHHHHHHHHHHHHHHHHHhhcC---CcccCCCchheEEEcCCCCEEECcccccc
Confidence 9999999999999999654 24589999999999999999999999 99999999999999999999999999998
Q ss_pred cccCCCCc-ccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCC--------CCCcc-cHHHHHH
Q 035998 894 LILSPYDT-HVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCK--------PKGSR-DLISWVI 963 (1020)
Q Consensus 894 ~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~--------~~~~~-~~~~~~~ 963 (1020)
........ .......||..|+|||++.+..++.++||||+|+++|||++|..|+.... +.... .......
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (302)
T 4e5w_A 175 AIETDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVN 254 (302)
T ss_dssp ECCTTCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCGGGHHHHHHH
T ss_pred cccCCCcceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchhhHHhhccCCcccccCHHHHHH
Confidence 76543221 22334567888999999988899999999999999999999999864210 01111 1111111
Q ss_pred HHHhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhcC
Q 035998 964 RMRQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSII 1020 (1020)
Q Consensus 964 ~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~il 1020 (1020)
........ ..+......+.+++.+||+.||.+|||++++++.|++++
T Consensus 255 ~~~~~~~~----------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~ll 301 (302)
T 4e5w_A 255 TLKEGKRL----------PCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALL 301 (302)
T ss_dssp HHHTTCCC----------CCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHhccCCC----------CCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHh
Confidence 11111110 011122346889999999999999999999999999874
No 125
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.3e-37 Score=342.99 Aligned_cols=249 Identities=23% Similarity=0.334 Sum_probs=195.5
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCchh--------------------------hHHHHHHHHHHHH
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCGQ--------------------------MEREFRAEVEALS 793 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~--------------------------~~~~~~~E~~~l~ 793 (1020)
.++|++.+.||+|+||.||+|+.. +++.||||++...... ..+.+.+|+++++
T Consensus 12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~ 91 (298)
T 2zv2_A 12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK 91 (298)
T ss_dssp ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence 367999999999999999999864 6889999998654311 1245889999999
Q ss_pred HcCCCccceEeeEEec--cCceEEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCC
Q 035998 794 RAQHPNLVHLQGYCMH--KNDRLLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDI 871 (1020)
Q Consensus 794 ~l~h~niv~l~~~~~~--~~~~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dl 871 (1020)
+++||||+++++++.+ .+..++||||+++++|.++... ..+++..+..++.|++.||+|||++ +|+||||
T Consensus 92 ~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~-----~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dl 163 (298)
T 2zv2_A 92 KLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTL-----KPLSEDQARFYFQDLIKGIEYLHYQ---KIIHRDI 163 (298)
T ss_dssp TCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCS-----SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCC
T ss_pred hCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhc-----CCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCC
Confidence 9999999999999986 5678999999999998776432 4689999999999999999999999 9999999
Q ss_pred CCCCEEEcCCCCeEEeeccccccccCCCCcccccccccccCccCccccCCCC---CCchhhHHHHHHHHHHHHcCCCCCC
Q 035998 872 KSSNILLDGNFGAHLADFGLARLILSPYDTHVTTDLVGTLGYIPPEYGQASV---ATYKGDVYSFGVVLLELLTGKRPMD 948 (1020)
Q Consensus 872 kp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---~~~~~DvwSlGvil~elltg~~pf~ 948 (1020)
||+||+++.++.+||+|||+++...... .......||+.|+|||++.+.. ++.++||||+||++|||++|+.||.
T Consensus 164 kp~Nil~~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~ 241 (298)
T 2zv2_A 164 KPSNLLVGEDGHIKIADFGVSNEFKGSD--ALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFM 241 (298)
T ss_dssp CGGGEEECTTSCEEECCCTTCEECSSSS--CEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSC
T ss_pred CHHHEEECCCCCEEEecCCCcccccccc--ccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCC
Confidence 9999999999999999999998764322 2234467999999999987765 4789999999999999999999996
Q ss_pred CCCCCCcccHHHHHHHHHhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 949 MCKPKGSRDLISWVIRMRQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 949 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
... ............. ...+ .+.....+.+++.+||+.||++||+++|+++
T Consensus 242 ~~~------~~~~~~~~~~~~~--~~~~-------~~~~~~~l~~li~~~l~~dp~~R~s~~e~l~ 292 (298)
T 2zv2_A 242 DER------IMCLHSKIKSQAL--EFPD-------QPDIAEDLKDLITRMLDKNPESRIVVPEIKL 292 (298)
T ss_dssp CSS------HHHHHHHHHHCCC--CCCS-------SSCCCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred Ccc------HHHHHHHHhcccC--CCCC-------ccccCHHHHHHHHHHhhcChhhCCCHHHHhc
Confidence 432 1111122211111 0000 0111235889999999999999999999986
No 126
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.5e-38 Score=363.71 Aligned_cols=262 Identities=21% Similarity=0.243 Sum_probs=206.4
Q ss_pred cHHHHHHhccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCch---hhHHHHHHHHHHHHHcCCCccceEeeEEe
Q 035998 733 SIDDILESTNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCG---QMEREFRAEVEALSRAQHPNLVHLQGYCM 808 (1020)
Q Consensus 733 ~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l~~~~~ 808 (1020)
.+.+.....++|++.+.||+|+||.||+|+.+ +|+.||||++.+... ...+.+.+|++++..++||||+++++++.
T Consensus 52 ~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~ 131 (412)
T 2vd5_A 52 RLKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQ 131 (412)
T ss_dssp HHHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEE
T ss_pred hhhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEe
Confidence 34555566789999999999999999999975 689999999975321 11234788999999999999999999999
Q ss_pred ccCceEEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEee
Q 035998 809 HKNDRLLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLAD 888 (1020)
Q Consensus 809 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~D 888 (1020)
+.+..|+||||+++|+|.+++.+. +..+++..++.++.||+.||+|||++ +|+||||||+||+++.++++||+|
T Consensus 132 ~~~~~~lVmE~~~gg~L~~~l~~~---~~~l~~~~~~~~~~qi~~aL~~LH~~---giiHrDLKp~NILld~~g~vkL~D 205 (412)
T 2vd5_A 132 DENYLYLVMEYYVGGDLLTLLSKF---GERIPAEMARFYLAEIVMAIDSVHRL---GYVHRDIKPDNILLDRCGHIRLAD 205 (412)
T ss_dssp CSSEEEEEECCCCSCBHHHHHHHH---SSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECC
T ss_pred eCCEEEEEEcCCCCCcHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecccCHHHeeecCCCCEEEee
Confidence 999999999999999999999864 23689999999999999999999999 999999999999999999999999
Q ss_pred ccccccccCCCCcccccccccccCccCccccC-------CCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHH
Q 035998 889 FGLARLILSPYDTHVTTDLVGTLGYIPPEYGQ-------ASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISW 961 (1020)
Q Consensus 889 fg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-------~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~ 961 (1020)
||+++...... .......+||+.|+|||++. ...++.++||||+||++|||++|+.||...... .....
T Consensus 206 FGla~~~~~~~-~~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~---~~~~~ 281 (412)
T 2vd5_A 206 FGSCLKLRADG-TVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTA---ETYGK 281 (412)
T ss_dssp CTTCEECCTTS-CEECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSSHH---HHHHH
T ss_pred chhheeccCCC-ccccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCCHH---HHHHH
Confidence 99998764322 22233468999999999876 467899999999999999999999999753221 11111
Q ss_pred HHHHHhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCC---CCHHHHHH
Q 035998 962 VIRMRQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVR---PTTQQLVS 1014 (1020)
Q Consensus 962 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~R---Ps~~evl~ 1014 (1020)
.......... |..... ...++.+++.+||+ +|++| |+++|+++
T Consensus 282 i~~~~~~~~~-----p~~~~~----~s~~~~dli~~lL~-~p~~Rlgr~~~~ei~~ 327 (412)
T 2vd5_A 282 IVHYKEHLSL-----PLVDEG----VPEEARDFIQRLLC-PPETRLGRGGAGDFRT 327 (412)
T ss_dssp HHTHHHHCCC-----C----C----CCHHHHHHHHTTSS-CGGGCTTTTTHHHHHT
T ss_pred HHhcccCcCC-----CccccC----CCHHHHHHHHHHcC-ChhhcCCCCCHHHHhc
Confidence 1111111111 111011 12368899999999 99998 58999876
No 127
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=100.00 E-value=1.2e-37 Score=342.84 Aligned_cols=262 Identities=19% Similarity=0.252 Sum_probs=206.6
Q ss_pred hccCCCcCCeeeccCCeEEEEEEe-CCCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCccceEeeEE-eccCceEEEE
Q 035998 740 STNNFDQANIIGCGGFGLVYRATL-PDGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNLVHLQGYC-MHKNDRLLIY 817 (1020)
Q Consensus 740 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~-~~~~~~~lv~ 817 (1020)
..++|++.+.||+|+||.||+|+. .+++.||||++..... ...+.+|+++++.++|++++..+.++ .+.+..++||
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~ 84 (296)
T 4hgt_A 7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVM 84 (296)
T ss_dssp ----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC-----CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEE
T ss_pred cCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeeccccc--chHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEEE
Confidence 357899999999999999999986 5788999998765432 23578899999999988877766666 5566779999
Q ss_pred EeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEE---cCCCCeEEeecccccc
Q 035998 818 SFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILL---DGNFGAHLADFGLARL 894 (1020)
Q Consensus 818 e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll---~~~~~~kl~Dfg~~~~ 894 (1020)
||+ +++|.+++... ...+++..++.++.|++.||+|||++ +|+||||||+||++ +.++.+||+|||+++.
T Consensus 85 e~~-~~~L~~~~~~~---~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~ 157 (296)
T 4hgt_A 85 ELL-GPSLEDLFNFC---SRKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKK 157 (296)
T ss_dssp ECC-CCBHHHHHHHT---TSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECCGGGTTCEEECCCTTCEE
T ss_pred Ecc-CCCHHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeeeeccCCCCeEEEecCcccee
Confidence 999 99999998753 24689999999999999999999999 99999999999999 7889999999999987
Q ss_pred ccCCCCc-----ccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhc
Q 035998 895 ILSPYDT-----HVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQEN 969 (1020)
Q Consensus 895 ~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~ 969 (1020)
....... .......||+.|+|||.+.+..++.++||||+||++|||++|+.||......................
T Consensus 158 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~ 237 (296)
T 4hgt_A 158 YRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMST 237 (296)
T ss_dssp CBCTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHS
T ss_pred ccCcccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhhhcccccc
Confidence 6543221 12234678999999999999999999999999999999999999998766555444444333332222
Q ss_pred ccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 970 RESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 970 ~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
...... ... ...+.+++.+||+.||++||+++++++.|+++
T Consensus 238 ~~~~~~-----~~~----~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~ 278 (296)
T 4hgt_A 238 PIEVLC-----KGY----PSEFATYLNFCRSLRFDDKPDYSYLRQLFRNL 278 (296)
T ss_dssp CHHHHT-----TTS----CHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHH
T ss_pred hhhhhh-----ccC----CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 111100 111 23688999999999999999999999999876
No 128
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=8.3e-38 Score=368.77 Aligned_cols=329 Identities=19% Similarity=0.176 Sum_probs=294.1
Q ss_pred CCCCCCC--cCceEEcCCCCCCCCCCCCCCCceEEEecCCCcccccccccccCCCCCcEEecCCCCCCCCCCccccCCCC
Q 035998 57 ASSSDCC--HWVGITCNSSSSLGLNDSIGSGRVTGLFLYKRRLKGKLSESLGNLVQLRFLNLSHNLLKGTVPVSLVNLPN 134 (1020)
Q Consensus 57 ~~~~~~C--~w~gv~C~~~~~~~~~~~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 134 (1020)
++..+.| .|..|.|+....+.+|...+ ..++.|+|++|.+++..+..|.++++|++|+|++|.+++..|..|.++++
T Consensus 3 Cp~~C~C~~~~~~v~c~~~~l~~ip~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~ 81 (477)
T 2id5_A 3 CPPRCECSAQDRAVLCHRKRFVAVPEGIP-TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFN 81 (477)
T ss_dssp CSTTCEEETTTTEEECCSCCCSSCCSCCC-TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred ccCCCeECCCCCEEEeCCCCcCcCCCCCC-CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCcc
Confidence 4555557 48899999999999998775 58999999999999988899999999999999999999888999999999
Q ss_pred CCeeeccCCCCCCCCCCcc-CCCCcceeeeccCccCCCCCccccccCCcccEEEccCCCCCCCCCCcccccccccccccc
Q 035998 135 LEVLDLSSNDLSGPLPQTI-NLPSIQVLDISSNSLNGSVPTSICKNSSRIRVINLSVNYFSGTLSPGLGNCASLEHLCLG 213 (1020)
Q Consensus 135 L~~L~L~~n~l~~~~p~~~-~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~ 213 (1020)
|++|+|++|++++.++..+ ++++|++|+|++|++++ ++...+..+++|+.|+|++|.+.+..+..|.++++|++|+|+
T Consensus 82 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 160 (477)
T 2id5_A 82 LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVI-LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLE 160 (477)
T ss_dssp CCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEE
T ss_pred CCEEECCCCcCCccCcccccCCCCCCEEECCCCcccc-CChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECC
Confidence 9999999999998888777 89999999999999984 444455789999999999999998888899999999999999
Q ss_pred ccccccccchhhhhhcccccccccccccCCCCCcccccCCCccEEEccCCcCcccCcccccCCcccceeecccccccccC
Q 035998 214 MNDLTGGIADDIFQLQKLRLLGLQDNQLSGKLSPSIADLSNLVRLDVSSNNFSGNIPDVFAGLGEFQYLVAHSNRFTGRI 293 (1020)
Q Consensus 214 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 293 (1020)
+|++++..+..+..+++|+.|+|++|++++..+..|..+++|++|++++|.+.+.+|..+....+|+.|++++|++++..
T Consensus 161 ~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 240 (477)
T 2id5_A 161 KCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP 240 (477)
T ss_dssp SCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCC
T ss_pred CCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccC
Confidence 99999877788999999999999999999888888999999999999999888777777766779999999999999766
Q ss_pred CCCCcCCcccccccccccccccccccCCCCCCCcCEEEcCCCccCCCCCCCCCCCCCCCeEecCCCcccccCcccccCCC
Q 035998 294 PHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNKFNGPLPTNLPRCRKLKNINLARNNFSGQIPETYKNFE 373 (1020)
Q Consensus 294 p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 373 (1020)
+..+..+++|+.|+|++|.+++..+..|..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..|..++
T Consensus 241 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 320 (477)
T 2id5_A 241 YLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVG 320 (477)
T ss_dssp HHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGG
T ss_pred HHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCc
Confidence 67788999999999999999988888899999999999999999988899999999999999999999988788889999
Q ss_pred CCCeeeCCCCCCcc
Q 035998 374 SLSYLSLSNSSIYN 387 (1020)
Q Consensus 374 ~L~~L~l~~N~i~~ 387 (1020)
+|++|++++|++..
T Consensus 321 ~L~~L~l~~N~l~c 334 (477)
T 2id5_A 321 NLETLILDSNPLAC 334 (477)
T ss_dssp GCCEEECCSSCEEC
T ss_pred ccCEEEccCCCccC
Confidence 99999999998764
No 129
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=100.00 E-value=5.8e-39 Score=352.01 Aligned_cols=257 Identities=25% Similarity=0.396 Sum_probs=211.7
Q ss_pred hccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEEE
Q 035998 740 STNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIYS 818 (1020)
Q Consensus 740 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 818 (1020)
..++|++.+.||+|+||.||+|.+. ++..||+|++..+.. ..+.+.+|++++++++||||+++++++.+.+..++|||
T Consensus 11 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e 89 (288)
T 3kfa_A 11 ERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITE 89 (288)
T ss_dssp CGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCST-HHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEE
T ss_pred cccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCHH-HHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEEEE
Confidence 4567899999999999999999876 478899999986543 35678999999999999999999999999999999999
Q ss_pred eccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccCC
Q 035998 819 FMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILSP 898 (1020)
Q Consensus 819 ~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~ 898 (1020)
|+++++|.+++... ....+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++.....
T Consensus 90 ~~~~~~L~~~~~~~--~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~ 164 (288)
T 3kfa_A 90 FMTYGNLLDYLREC--NRQEVSAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGD 164 (288)
T ss_dssp CCTTEEHHHHHHHC--CTTTSCHHHHHHHHHHHHHHHHHHHHH---TCCCSCCSGGGEEECGGGCEEECCCCGGGTSCSS
T ss_pred cCCCCcHHHHHHhc--ccCCccHhHHHHHHHHHHHHHHHHHHC---CccCCCCCcceEEEcCCCCEEEccCccceeccCC
Confidence 99999999999764 235689999999999999999999999 9999999999999999999999999999876432
Q ss_pred CCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHc-CCCCCCCCCCCCcccHHHHHHHHHhhcccccccCc
Q 035998 899 YDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLT-GKRPMDMCKPKGSRDLISWVIRMRQENRESEVLDP 977 (1020)
Q Consensus 899 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 977 (1020)
. ........+++.|+|||++.+..++.++||||+|+++|+|++ |..||....... .... ....... .
T Consensus 165 ~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~~~---~~~~---~~~~~~~-~---- 232 (288)
T 3kfa_A 165 T-YTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQ---VYEL---LEKDYRM-E---- 232 (288)
T ss_dssp S-SEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGG---HHHH---HHTTCCC-C----
T ss_pred c-cccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH---HHHH---HhccCCC-C----
Confidence 2 223334566789999999988899999999999999999999 999997543221 1111 1111110 0
Q ss_pred cccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 978 FIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 978 ~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
.+......+.+++.+|++.||.+||+++++++.|+++
T Consensus 233 -----~~~~~~~~l~~li~~~l~~dp~~Rps~~~~~~~l~~~ 269 (288)
T 3kfa_A 233 -----RPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETM 269 (288)
T ss_dssp -----CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred -----CCCCCCHHHHHHHHHHhCCChhhCcCHHHHHHHHHHH
Confidence 0111224688999999999999999999999999875
No 130
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=100.00 E-value=2.5e-38 Score=351.67 Aligned_cols=265 Identities=24% Similarity=0.367 Sum_probs=190.9
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCch-hhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEEE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCG-QMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIYS 818 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 818 (1020)
.++|++.+.||+|+||.||+|... +++.||||++..... ...+.+.+|++++++++||||+++++++.+.+..++|||
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 83 (317)
T 2pmi_A 4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVFE 83 (317)
T ss_dssp ---------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEEE
T ss_pred ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEEE
Confidence 467999999999999999999865 689999999875532 233568899999999999999999999999999999999
Q ss_pred eccCCChhhhhhhcC--CCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeecccccccc
Q 035998 819 FMENGSLDYWLHEKL--DGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLIL 896 (1020)
Q Consensus 819 ~~~~g~L~~~l~~~~--~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~ 896 (1020)
|++ |+|.+++.... .....+++..+..++.||+.||+|||+. +|+||||||+||+++.++.+||+|||+++...
T Consensus 84 ~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~ 159 (317)
T 2pmi_A 84 FMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHEN---KILHRDLKPQNLLINKRGQLKLGDFGLARAFG 159 (317)
T ss_dssp CCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCSSCEETT
T ss_pred ecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCChHHeEEcCCCCEEECcCccceecC
Confidence 998 59999887542 2234689999999999999999999999 99999999999999999999999999998764
Q ss_pred CCCCcccccccccccCccCccccCC-CCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcc---cc
Q 035998 897 SPYDTHVTTDLVGTLGYIPPEYGQA-SVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENR---ES 972 (1020)
Q Consensus 897 ~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~---~~ 972 (1020)
.+. .......||+.|+|||++.+ ..++.++||||+||++|||++|+.||...... +............. ..
T Consensus 160 ~~~--~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~---~~~~~i~~~~~~~~~~~~~ 234 (317)
T 2pmi_A 160 IPV--NTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDE---EQLKLIFDIMGTPNESLWP 234 (317)
T ss_dssp SCC--CCCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH---HHHHHHHHHHCSCCTTTCG
T ss_pred CCc--ccCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChH---HHHHHHHHHhCCCChhHhh
Confidence 322 12234578999999998876 46899999999999999999999999754321 22222211111000 00
Q ss_pred cc-----cCccc------------cCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 973 EV-----LDPFI------------YDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 973 ~~-----~d~~~------------~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
.. ..+.. ...........+.+++.+||+.||++|||++|+++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~ 293 (317)
T 2pmi_A 235 SVTKLPKYNPNIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALH 293 (317)
T ss_dssp GGGGCTTCCTTCCCCCCCCSHHHHGGGCSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred hhhhhhhcccccccccchhHHHhhcccccccCCHHHHHHHHHHCCCCcccCCCHHHHhC
Confidence 00 00000 00000012236889999999999999999999986
No 131
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=100.00 E-value=6.9e-39 Score=357.54 Aligned_cols=266 Identities=23% Similarity=0.350 Sum_probs=213.0
Q ss_pred HHHHhccCCCcCCeeeccCCeEEEEEEeC------CCCEEEEEEecCCch-hhHHHHHHHHHHHHHcCCCccceEeeEEe
Q 035998 736 DILESTNNFDQANIIGCGGFGLVYRATLP------DGRNVAIKRLSGDCG-QMEREFRAEVEALSRAQHPNLVHLQGYCM 808 (1020)
Q Consensus 736 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~ 808 (1020)
++....++|++.+.||+|+||.||+|++. +++.||||++..... .....+.+|++++++++||||+++++++.
T Consensus 19 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~ 98 (322)
T 1p4o_A 19 EWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVS 98 (322)
T ss_dssp TTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEEC
T ss_pred hhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEEEc
Confidence 33445678999999999999999999754 367899999976542 33456889999999999999999999999
Q ss_pred ccCceEEEEEeccCCChhhhhhhcC------CCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCC
Q 035998 809 HKNDRLLIYSFMENGSLDYWLHEKL------DGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNF 882 (1020)
Q Consensus 809 ~~~~~~lv~e~~~~g~L~~~l~~~~------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~ 882 (1020)
+.+..++||||+++|+|.+++.... .....+++..++.++.|++.||+|||++ +|+||||||+||+++.++
T Consensus 99 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~NIli~~~~ 175 (322)
T 1p4o_A 99 QGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDF 175 (322)
T ss_dssp SSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCSGGGEEECTTC
T ss_pred cCCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHC---CCccCCCccceEEEcCCC
Confidence 9999999999999999999987532 1124578999999999999999999999 999999999999999999
Q ss_pred CeEEeeccccccccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHc-CCCCCCCCCCCCcccHHHH
Q 035998 883 GAHLADFGLARLILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLT-GKRPMDMCKPKGSRDLISW 961 (1020)
Q Consensus 883 ~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-g~~pf~~~~~~~~~~~~~~ 961 (1020)
.+||+|||+++...............+++.|+|||++.+..++.++||||+|+++|||++ |..||..... ...
T Consensus 176 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~------~~~ 249 (322)
T 1p4o_A 176 TVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSN------EQV 249 (322)
T ss_dssp CEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCH------HHH
T ss_pred eEEECcCccccccccccccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCCH------HHH
Confidence 999999999987643322233344567889999999988899999999999999999999 8999965321 111
Q ss_pred HHHHHhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhcC
Q 035998 962 VIRMRQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSII 1020 (1020)
Q Consensus 962 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~il 1020 (1020)
........ .... +......+.+++.+||+.||++||++.|+++.|++++
T Consensus 250 ~~~~~~~~-~~~~---------~~~~~~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~~ 298 (322)
T 1p4o_A 250 LRFVMEGG-LLDK---------PDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEM 298 (322)
T ss_dssp HHHHHTTC-CCCC---------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGS
T ss_pred HHHHHcCC-cCCC---------CCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHhh
Confidence 11111111 1110 1112245889999999999999999999999998763
No 132
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=100.00 E-value=2.7e-38 Score=354.48 Aligned_cols=263 Identities=28% Similarity=0.429 Sum_probs=211.2
Q ss_pred HhccCCCcCCeeeccCCeEEEEEEeCC------CCEEEEEEecCCch-hhHHHHHHHHHHHHHc-CCCccceEeeEEecc
Q 035998 739 ESTNNFDQANIIGCGGFGLVYRATLPD------GRNVAIKRLSGDCG-QMEREFRAEVEALSRA-QHPNLVHLQGYCMHK 810 (1020)
Q Consensus 739 ~~~~~~~~~~~lg~G~~g~V~~~~~~~------~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~ 810 (1020)
...++|++.+.||+|+||.||+|.... ...||+|.+..... ...+.+.+|+++++++ +||||+++++++.+.
T Consensus 43 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~ 122 (333)
T 2i1m_A 43 FPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHG 122 (333)
T ss_dssp CCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred CCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEecC
Confidence 345789999999999999999998642 24799999976542 3456789999999999 899999999999999
Q ss_pred CceEEEEEeccCCChhhhhhhcCC----------CCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcC
Q 035998 811 NDRLLIYSFMENGSLDYWLHEKLD----------GPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDG 880 (1020)
Q Consensus 811 ~~~~lv~e~~~~g~L~~~l~~~~~----------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~ 880 (1020)
+..++||||+++|+|.+++..... ....+++..++.++.|++.||+|||++ +|+||||||+||+++.
T Consensus 123 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~NIl~~~ 199 (333)
T 2i1m_A 123 GPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASK---NCIHRDVAARNVLLTN 199 (333)
T ss_dssp SSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGCEEEG
T ss_pred CceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcC---CcccCCcccceEEECC
Confidence 999999999999999999875421 134679999999999999999999999 9999999999999999
Q ss_pred CCCeEEeeccccccccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHc-CCCCCCCCCCCCcccHH
Q 035998 881 NFGAHLADFGLARLILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLT-GKRPMDMCKPKGSRDLI 959 (1020)
Q Consensus 881 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-g~~pf~~~~~~~~~~~~ 959 (1020)
++.+||+|||+++...............+++.|+|||++.+..++.++||||||+++|||+| |..||........ ..
T Consensus 200 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~--~~ 277 (333)
T 2i1m_A 200 GHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSK--FY 277 (333)
T ss_dssp GGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCSSHH--HH
T ss_pred CCeEEECccccccccccccceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccchhHH--HH
Confidence 99999999999987654333333444567889999999988899999999999999999999 9999975432211 11
Q ss_pred HHHHHHHhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 960 SWVIRMRQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 960 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
......... ..+ ......+.+++.+||+.||.+|||++|+++.|+++
T Consensus 278 ----~~~~~~~~~--~~~-------~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~ 324 (333)
T 2i1m_A 278 ----KLVKDGYQM--AQP-------AFAPKNIYSIMQACWALEPTHRPTFQQICSFLQEQ 324 (333)
T ss_dssp ----HHHHHTCCC--CCC-------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred ----HHHhcCCCC--CCC-------CCCCHHHHHHHHHHhccChhhCcCHHHHHHHHHHH
Confidence 111111100 001 11123688999999999999999999999999875
No 133
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=100.00 E-value=2.8e-37 Score=340.07 Aligned_cols=261 Identities=19% Similarity=0.255 Sum_probs=208.8
Q ss_pred ccCCCcCCeeeccCCeEEEEEEe-CCCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCccceEeeEE-eccCceEEEEE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATL-PDGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNLVHLQGYC-MHKNDRLLIYS 818 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~-~~~~~~~lv~e 818 (1020)
.++|++.+.||+|+||.||+|+. .+++.||||++..... .+.+.+|+++++.++|++++..+.++ .+.+..++|||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e 85 (296)
T 3uzp_A 8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVME 85 (296)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSS--CCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcc--hhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEEE
Confidence 46899999999999999999986 5789999999876533 24588999999999988877666665 45666789999
Q ss_pred eccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEE---cCCCCeEEeeccccccc
Q 035998 819 FMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILL---DGNFGAHLADFGLARLI 895 (1020)
Q Consensus 819 ~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll---~~~~~~kl~Dfg~~~~~ 895 (1020)
|+ +++|.+++... ...+++..++.++.|++.||+|||++ +|+||||||+||++ +.++.+||+|||+++..
T Consensus 86 ~~-~~~L~~~~~~~---~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~ 158 (296)
T 3uzp_A 86 LL-GPSLEDLFNFC---SRKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKY 158 (296)
T ss_dssp CC-CCBHHHHHHHT---TTCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECCGGGTTCEEECCCTTCEEC
T ss_pred ec-CCCHHHHHHhh---ccCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHeEEecCCCCCeEEEeeCCCcccc
Confidence 99 89999999753 24689999999999999999999999 99999999999999 48899999999999876
Q ss_pred cCCCCc-----ccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcc
Q 035998 896 LSPYDT-----HVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENR 970 (1020)
Q Consensus 896 ~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~ 970 (1020)
...... .......||+.|+|||++.+..++.++||||+|+++|||++|+.||.......................
T Consensus 159 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~ 238 (296)
T 3uzp_A 159 RDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTP 238 (296)
T ss_dssp BCTTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSC
T ss_pred cccccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhcccccCCc
Confidence 543221 112456789999999999999999999999999999999999999987655444444333332222111
Q ss_pred cccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 971 ESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 971 ~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
.... ... ....+.+++.+||+.||++||+++++++.|+++
T Consensus 239 ~~~~-----~~~----~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~ 278 (296)
T 3uzp_A 239 IEVL-----CKG----YPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNL 278 (296)
T ss_dssp HHHH-----TTT----SCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHH
T ss_pred hHHH-----Hhh----CCHHHHHHHHHHHhcCcCcCCCHHHHHHHHHHH
Confidence 1100 011 123588999999999999999999999999875
No 134
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=100.00 E-value=1.7e-37 Score=346.42 Aligned_cols=248 Identities=24% Similarity=0.328 Sum_probs=194.5
Q ss_pred ccCCCcCCeeeccCCeEEEEEEe----CCCCEEEEEEecCCc----hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCc
Q 035998 741 TNNFDQANIIGCGGFGLVYRATL----PDGRNVAIKRLSGDC----GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKND 812 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~----~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 812 (1020)
.++|++.+.||+|+||.||+|+. .+++.||+|++.... ......+.+|++++++++||||+++++++.+.+.
T Consensus 16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~ 95 (327)
T 3a62_A 16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGK 95 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSC
T ss_pred HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCE
Confidence 35799999999999999999986 478999999997653 1233457889999999999999999999999999
Q ss_pred eEEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeecccc
Q 035998 813 RLLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLA 892 (1020)
Q Consensus 813 ~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~ 892 (1020)
.++||||+++++|.+++... ..+++..+..++.||+.||+|||++ +|+||||||+||+++.++.+||+|||++
T Consensus 96 ~~lv~e~~~~~~L~~~l~~~----~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~Nill~~~~~~kl~Dfg~~ 168 (327)
T 3a62_A 96 LYLILEYLSGGELFMQLERE----GIFMEDTACFYLAEISMALGHLHQK---GIIYRDLKPENIMLNHQGHVKLTDFGLC 168 (327)
T ss_dssp EEEEEECCTTEEHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECTTSCEEECCCSCC
T ss_pred EEEEEeCCCCCcHHHHHHhC----CCCCHHHHHHHHHHHHHHHHHHHhC---CEEcccCCHHHeEECCCCcEEEEeCCcc
Confidence 99999999999999999764 4688999999999999999999999 9999999999999999999999999999
Q ss_pred ccccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccc
Q 035998 893 RLILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRES 972 (1020)
Q Consensus 893 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~ 972 (1020)
+..... ........||+.|+|||++.+..++.++||||+|+++|||++|+.||..... .... ..+.....
T Consensus 169 ~~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~---~~~~---~~i~~~~~-- 238 (327)
T 3a62_A 169 KESIHD--GTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENR---KKTI---DKILKCKL-- 238 (327)
T ss_dssp ------------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH---HHHH---HHHHHTCC--
T ss_pred cccccC--CccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCCH---HHHH---HHHHhCCC--
Confidence 764322 1223446789999999999999999999999999999999999999974321 1111 11111110
Q ss_pred cccCccccCccCHHHHHHHHHHHhhccCCCCCCCC-----CHHHHHH
Q 035998 973 EVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRP-----TTQQLVS 1014 (1020)
Q Consensus 973 ~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RP-----s~~evl~ 1014 (1020)
. . ++.....+.+++.+||+.||++|| ++.|+++
T Consensus 239 ~-~--------p~~~~~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~ 276 (327)
T 3a62_A 239 N-L--------PPYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQA 276 (327)
T ss_dssp C-C--------CTTSCHHHHHHHHHHSCSCGGGSTTSSTTTHHHHHH
T ss_pred C-C--------CCCCCHHHHHHHHHHHhcCHhhccCCCCCCHHHHHc
Confidence 0 0 011123688999999999999999 7788876
No 135
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-37 Score=350.69 Aligned_cols=251 Identities=27% Similarity=0.378 Sum_probs=196.4
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeCCCCEEEEEEecCCc--hhhHHHHHHHHHHHHHcCC--CccceEeeEEeccCceEEE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLPDGRNVAIKRLSGDC--GQMEREFRAEVEALSRAQH--PNLVHLQGYCMHKNDRLLI 816 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h--~niv~l~~~~~~~~~~~lv 816 (1020)
.++|++.+.||+|+||.||+|...+++.||||++.... ....+.+.+|++++++++| |||+++++++.+....++|
T Consensus 8 ~~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv 87 (343)
T 3dbq_A 8 GRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMV 87 (343)
T ss_dssp SCEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred cCEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEE
Confidence 46799999999999999999998889999999987543 3334678999999999976 9999999999999999999
Q ss_pred EEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeecccccccc
Q 035998 817 YSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLIL 896 (1020)
Q Consensus 817 ~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~ 896 (1020)
|| +.+++|.+++... ..+++.++..++.|++.||+|||+. +|+||||||+||+++ ++.+||+|||+++...
T Consensus 88 ~e-~~~~~L~~~l~~~----~~~~~~~~~~i~~qi~~al~~lH~~---~iiHrDikp~NIll~-~~~~kl~DFG~a~~~~ 158 (343)
T 3dbq_A 88 ME-CGNIDLNSWLKKK----KSIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGMLKLIDFGIANQMQ 158 (343)
T ss_dssp EC-CCSEEHHHHHHHS----CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEE-TTEEEECCCSSSCCC-
T ss_pred Ee-CCCCCHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCcceEEEE-CCcEEEeecccccccC
Confidence 99 5678999999864 4689999999999999999999999 999999999999997 6789999999998765
Q ss_pred CCCCcccccccccccCccCccccCC-----------CCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHH
Q 035998 897 SPYDTHVTTDLVGTLGYIPPEYGQA-----------SVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRM 965 (1020)
Q Consensus 897 ~~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~ 965 (1020)
............||+.|+|||++.+ ..++.++||||+||++|||++|+.||.... .........
T Consensus 159 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~-----~~~~~~~~~ 233 (343)
T 3dbq_A 159 PDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQII-----NQISKLHAI 233 (343)
T ss_dssp -----------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCC-----SHHHHHHHH
T ss_pred cccccccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhh-----hHHHHHHHH
Confidence 4333333445689999999998754 678999999999999999999999996432 122222222
Q ss_pred HhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 966 RQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 966 ~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
......... +......+.+++.+||+.||.+|||++|+++
T Consensus 234 ~~~~~~~~~---------~~~~~~~l~~li~~~L~~dp~~Rpt~~e~l~ 273 (343)
T 3dbq_A 234 IDPNHEIEF---------PDIPEKDLQDVLKCCLKRDPKQRISIPELLA 273 (343)
T ss_dssp HCTTSCCCC---------CCCSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred hcCCcccCC---------cccCCHHHHHHHHHHcCCChhHCCCHHHHHh
Confidence 111111110 1111135789999999999999999999986
No 136
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.6e-37 Score=362.89 Aligned_cols=347 Identities=24% Similarity=0.338 Sum_probs=217.7
Q ss_pred CCCcceeeeccCccCCCCCccccccCCcccEEEccCCCCCCCCCCccccccccccccccccccccccchhhhhhcccccc
Q 035998 155 LPSIQVLDISSNSLNGSVPTSICKNSSRIRVINLSVNYFSGTLSPGLGNCASLEHLCLGMNDLTGGIADDIFQLQKLRLL 234 (1020)
Q Consensus 155 l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 234 (1020)
+++|+.|++++|.+. .+|. +..+++|++|+|++|.+++..+ ++++++|++|++++|.+++..+
T Consensus 45 l~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~------------ 107 (466)
T 1o6v_A 45 LDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP------------ 107 (466)
T ss_dssp HHTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG------------
T ss_pred hccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh------------
Confidence 455666666666655 3442 2344555555555555543322 4444555555555554443322
Q ss_pred cccccccCCCCCcccccCCCccEEEccCCcCcccCcccccCCcccceeecccccccccCCCCCcCCcccccccccccccc
Q 035998 235 GLQDNQLSGKLSPSIADLSNLVRLDVSSNNFSGNIPDVFAGLGEFQYLVAHSNRFTGRIPHSLSNSPTLNLLNLRNNSLD 314 (1020)
Q Consensus 235 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 314 (1020)
+.++++|++|++++|.+++..+ +..+++|++|++++|++++. + .+..+++|+.|+++ |.+.
T Consensus 108 --------------~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~ 168 (466)
T 1o6v_A 108 --------------LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVT 168 (466)
T ss_dssp --------------GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCC
T ss_pred --------------hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-Cccc
Confidence 4444555555555555443322 44455555555555554432 1 24555555555554 3333
Q ss_pred cccccCCCCCCCcCEEEcCCCccCCCCCCCCCCCCCCCeEecCCCcccccCcccccCCCCCCeeeCCCCCCcchhhHHHH
Q 035998 315 GSLLLNCPALTNLTSLDLGTNKFNGPLPTNLPRCRKLKNINLARNNFSGQIPETYKNFESLSYLSLSNSSIYNLSSALQV 394 (1020)
Q Consensus 315 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~i~~l~~~~~~ 394 (1020)
+..+ +..+++|++|++++|++++. ..+..+++|++|++++|++++..| ++.+++|++|++++|+++.++.
T Consensus 169 ~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~---- 238 (466)
T 1o6v_A 169 DLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGT---- 238 (466)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG----
T ss_pred Cchh--hccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccchh----
Confidence 2222 55566666666666666532 235566666666666666665444 5556666666666666554421
Q ss_pred HhhhcccchhhhhccccCCCCCCCccccccCceEEEecccccccccchhhhcCCCCcEEecccccccccccccccCcCcC
Q 035998 395 LQQCRNLTTLVLTLNFRNEKLPTDPRLHFANLKVLVIASCGLRGSIPQWLRGCSKLQLVDLSWNQLSGTIPVWFGGFQDL 474 (1020)
Q Consensus 395 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 474 (1020)
+ ..+++|+.|++++|.+.+..| +..+++|+.|++++|++++..+ +..+++|
T Consensus 239 l-------------------------~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L 289 (466)
T 1o6v_A 239 L-------------------------ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTAL 289 (466)
T ss_dssp G-------------------------GGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred h-------------------------hcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCcc
Confidence 1 123445555555555555444 6778888888888888885544 7788888
Q ss_pred cEEeCCCCcccccCCCCCCCCcccccccCcCCCCCCCcccceeecccccccccccccCCCCeeecccCccccCCCccccC
Q 035998 475 FYLDLSNNTFTGEIPKNLTGLPSLITRNISLEEPSPDFPFFMRRNVSARGLQYNQIWSFPPTIDLSLNRLDGSIWPEFGN 554 (1020)
Q Consensus 475 ~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~s~~~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~l~Ls~N~l~~~~~~~~~~ 554 (1020)
++|+|++|++++..| +..+++| +.|+|++|++++..| ++.
T Consensus 290 ~~L~L~~n~l~~~~~--~~~l~~L------------------------------------~~L~L~~n~l~~~~~--~~~ 329 (466)
T 1o6v_A 290 TNLELNENQLEDISP--ISNLKNL------------------------------------TYLTLYFNNISDISP--VSS 329 (466)
T ss_dssp SEEECCSSCCSCCGG--GGGCTTC------------------------------------SEEECCSSCCSCCGG--GGG
T ss_pred CeEEcCCCcccCchh--hcCCCCC------------------------------------CEEECcCCcCCCchh--hcc
Confidence 888888888876544 5555555 357777888877655 788
Q ss_pred CCcceEEEecCCcceeccCccccCCCcccEEEccCCcccccCCccccccccccccccccccccccC
Q 035998 555 LKKLHVFDLKHNNLSGPIPSELTGMTSLETLDLSYNNLSGAIPISLEKLSFLSKFSVANNHLTGRI 620 (1020)
Q Consensus 555 L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~~ 620 (1020)
+++|+.|++++|++++. +.+..+++|++|++++|++++.+| +..+++|+.|++++|++++.+
T Consensus 330 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~p 391 (466)
T 1o6v_A 330 LTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAP 391 (466)
T ss_dssp CTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECCC
T ss_pred CccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCCc
Confidence 99999999999999864 579999999999999999998877 899999999999999999843
No 137
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=100.00 E-value=1.2e-37 Score=349.85 Aligned_cols=244 Identities=21% Similarity=0.269 Sum_probs=203.2
Q ss_pred cCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc---hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEE
Q 035998 742 NNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC---GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIY 817 (1020)
Q Consensus 742 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 817 (1020)
++|++.+.||+|+||.||+|+.. +|+.||||++.... ....+.+.+|+++++.++||||+++++++.+.+..++||
T Consensus 41 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 120 (350)
T 1rdq_E 41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM 120 (350)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEE
Confidence 57899999999999999999875 68999999986542 123456888999999999999999999999999999999
Q ss_pred EeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccC
Q 035998 818 SFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILS 897 (1020)
Q Consensus 818 e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~ 897 (1020)
||+++|+|.+++... ..+++..++.++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+++....
T Consensus 121 e~~~gg~L~~~l~~~----~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~ 193 (350)
T 1rdq_E 121 EYVAGGEMFSHLRRI----GRFSEPHARFYAAQIVLTFEYLHSL---DLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG 193 (350)
T ss_dssp ECCTTCBHHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECSS
T ss_pred cCCCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCccceEEECCCCCEEEcccccceeccC
Confidence 999999999999865 4589999999999999999999999 999999999999999999999999999987632
Q ss_pred CCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccccccCc
Q 035998 898 PYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVLDP 977 (1020)
Q Consensus 898 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 977 (1020)
. .....||+.|+|||++.+..++.++||||+||++|||++|+.||..... ......+..... .. |
T Consensus 194 ~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~------~~~~~~i~~~~~--~~--p 258 (350)
T 1rdq_E 194 R-----TWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQP------IQIYEKIVSGKV--RF--P 258 (350)
T ss_dssp C-----BCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH------HHHHHHHHHCCC--CC--C
T ss_pred C-----cccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCCH------HHHHHHHHcCCC--CC--C
Confidence 1 2345789999999999999999999999999999999999999974321 111112211110 00 1
Q ss_pred cccCccCHHHHHHHHHHHhhccCCCCCCCCC-----HHHHHH
Q 035998 978 FIYDKQHDKEMLRVLDIACLCLSESPKVRPT-----TQQLVS 1014 (1020)
Q Consensus 978 ~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs-----~~evl~ 1014 (1020)
......+.+++.+||+.||.+||+ ++|+++
T Consensus 259 -------~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~ei~~ 293 (350)
T 1rdq_E 259 -------SHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKN 293 (350)
T ss_dssp -------TTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred -------CCCCHHHHHHHHHHhhcCHHhccCCccCCHHHHHh
Confidence 111235889999999999999998 888875
No 138
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=100.00 E-value=9.4e-38 Score=357.80 Aligned_cols=267 Identities=21% Similarity=0.287 Sum_probs=204.8
Q ss_pred ccCCCcCCeeecc--CCeEEEEEEeC-CCCEEEEEEecCCc--hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEE
Q 035998 741 TNNFDQANIIGCG--GFGLVYRATLP-DGRNVAIKRLSGDC--GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLL 815 (1020)
Q Consensus 741 ~~~~~~~~~lg~G--~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 815 (1020)
.++|++.+.||+| +||.||+|+.. +++.||||++.... ....+.+.+|++++++++|||||++++++.+.+..++
T Consensus 24 ~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 103 (389)
T 3gni_B 24 GGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWV 103 (389)
T ss_dssp GGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred CCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEEE
Confidence 4679999999999 99999999976 68999999997553 3344678889999999999999999999999999999
Q ss_pred EEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccc
Q 035998 816 IYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLI 895 (1020)
Q Consensus 816 v~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~ 895 (1020)
||||+++|+|.+++.... ...+++..+..++.||+.||+|||++ +|+||||||+||+++.++.+||+|||.+...
T Consensus 104 v~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~NIll~~~~~~kl~dfg~~~~~ 178 (389)
T 3gni_B 104 VTSFMAYGSAKDLICTHF--MDGMNELAIAYILQGVLKALDYIHHM---GYVHRSVKASHILISVDGKVYLSGLRSNLSM 178 (389)
T ss_dssp EEECCTTCBHHHHHHHTC--TTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCGGGCEEC
T ss_pred EEEccCCCCHHHHHhhhc--ccCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEcccccceee
Confidence 999999999999997642 24589999999999999999999999 9999999999999999999999999998764
Q ss_pred cCCCC-----cccccccccccCccCccccCC--CCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhh
Q 035998 896 LSPYD-----THVTTDLVGTLGYIPPEYGQA--SVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQE 968 (1020)
Q Consensus 896 ~~~~~-----~~~~~~~~gt~~y~aPE~~~~--~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~ 968 (1020)
..... ........||+.|+|||++.+ ..++.++||||+||++|||++|+.||......... ..........
T Consensus 179 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~--~~~~~~~~~~ 256 (389)
T 3gni_B 179 ISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQML--LEKLNGTVPC 256 (389)
T ss_dssp EETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCSTTHH--HHC-------
T ss_pred ccccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHHHH--HHHhcCCCCc
Confidence 32211 112223478899999999887 67999999999999999999999999764433211 1000000000
Q ss_pred ---------cc-------------cccc---cCcc------ccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 969 ---------NR-------------ESEV---LDPF------IYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 969 ---------~~-------------~~~~---~d~~------~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
.. .... ..+. ............+.+++.+||+.||++|||++|+++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~ell~ 333 (389)
T 3gni_B 257 LLDTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLLN 333 (389)
T ss_dssp -------------------------------------------------CCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred cccccccccccccccccccccccccccccccCccccccCCCCCCccccccCHHHHHHHHHHhhcCcccCCCHHHHhc
Confidence 00 0000 0000 000011222346889999999999999999999986
No 139
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=100.00 E-value=4.3e-38 Score=354.28 Aligned_cols=250 Identities=25% Similarity=0.368 Sum_probs=188.8
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEEEe
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIYSF 819 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 819 (1020)
.++|++.+.||+|+||.||+|+.. +++.||||++.... ..+.+.+|++++++++||||+++++++.+.+..++||||
T Consensus 52 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~ 129 (349)
T 2w4o_A 52 SDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV--DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLEL 129 (349)
T ss_dssp GGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC------------CHHHHHCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred cCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch--hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEEEe
Confidence 467999999999999999999976 57899999997653 345688999999999999999999999999999999999
Q ss_pred ccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcC---CCCeEEeecccccccc
Q 035998 820 MENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDG---NFGAHLADFGLARLIL 896 (1020)
Q Consensus 820 ~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~---~~~~kl~Dfg~~~~~~ 896 (1020)
+++++|.+++... ..+++.+++.++.|++.||+|||+. +|+||||||+||+++. ++.+||+|||+++...
T Consensus 130 ~~~~~L~~~l~~~----~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~ 202 (349)
T 2w4o_A 130 VTGGELFDRIVEK----GYYSERDAADAVKQILEAVAYLHEN---GIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVE 202 (349)
T ss_dssp CCSCBHHHHHTTC----SSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESSSSTTCCEEECCCC------
T ss_pred CCCCCHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCcccEEEecCCCCCCEEEccCccccccC
Confidence 9999999988754 4689999999999999999999999 9999999999999975 8899999999998653
Q ss_pred CCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccccccC
Q 035998 897 SPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVLD 976 (1020)
Q Consensus 897 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 976 (1020)
.. .......||+.|+|||++.+..++.++|||||||++|||++|+.||...... .. ....+..... ....
T Consensus 203 ~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~---~~--~~~~i~~~~~--~~~~ 272 (349)
T 2w4o_A 203 HQ---VLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGD---QF--MFRRILNCEY--YFIS 272 (349)
T ss_dssp -------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCH---HH--HHHHHHTTCC--CCCT
T ss_pred cc---cccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCccc---HH--HHHHHHhCCC--ccCC
Confidence 22 2233467899999999999999999999999999999999999999643221 10 1111111110 0011
Q ss_pred ccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 977 PFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 977 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
+ . .......+.+++.+||+.||++|||+.|+++
T Consensus 273 ~-~----~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 305 (349)
T 2w4o_A 273 P-W----WDEVSLNAKDLVRKLIVLDPKKRLTTFQALQ 305 (349)
T ss_dssp T-T----TTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred c-h----hhhCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 1 1 1112246889999999999999999999987
No 140
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=100.00 E-value=1.1e-38 Score=347.94 Aligned_cols=256 Identities=28% Similarity=0.432 Sum_probs=207.4
Q ss_pred hccCCCcCCeeeccCCeEEEEEEeCCCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEEEe
Q 035998 740 STNNFDQANIIGCGGFGLVYRATLPDGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIYSF 819 (1020)
Q Consensus 740 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 819 (1020)
..++|++.+.||+|+||.||+|...+++.||||++..... ..+.+.+|++++++++||||+++++++. .+..++||||
T Consensus 11 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~ 88 (279)
T 1qpc_A 11 PRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSM-SPDAFLAEANLMKQLQHQRLVRLYAVVT-QEPIYIITEY 88 (279)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEEEC
T ss_pred CHHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCcc-cHHHHHHHHHHHHhCCCcCcceEEEEEc-CCCcEEEEec
Confidence 3467899999999999999999988888999999976532 3567899999999999999999999986 4568999999
Q ss_pred ccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccCCC
Q 035998 820 MENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILSPY 899 (1020)
Q Consensus 820 ~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~ 899 (1020)
+++++|.+++.... ...+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||.++......
T Consensus 89 ~~~~~L~~~l~~~~--~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 163 (279)
T 1qpc_A 89 MENGSLVDFLKTPS--GIKLTINKLLDMAAQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE 163 (279)
T ss_dssp CTTCBHHHHTTSHH--HHTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECSSSC
T ss_pred CCCCCHHHHHhcCC--CCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHhhEEEcCCCCEEECCCcccccccCcc
Confidence 99999999987531 12589999999999999999999999 99999999999999999999999999998764322
Q ss_pred CcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHc-CCCCCCCCCCCCcccHHHHHHHHHhhcccccccCcc
Q 035998 900 DTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLT-GKRPMDMCKPKGSRDLISWVIRMRQENRESEVLDPF 978 (1020)
Q Consensus 900 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 978 (1020)
........+++.|+|||+..+..++.++||||+|+++|||++ |+.||...... .. .......... ..
T Consensus 164 -~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~---~~---~~~~~~~~~~---~~-- 231 (279)
T 1qpc_A 164 -YTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNP---EV---IQNLERGYRM---VR-- 231 (279)
T ss_dssp -EECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHH---HH---HHHHHTTCCC---CC--
T ss_pred -cccccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCHH---HH---HHHHhcccCC---CC--
Confidence 122233456789999999988889999999999999999999 99999753221 11 1111111110 00
Q ss_pred ccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 979 IYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 979 ~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
+......+.+++.+||+.||++|||++++++.|+++
T Consensus 232 -----~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~ 267 (279)
T 1qpc_A 232 -----PDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDF 267 (279)
T ss_dssp -----CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred -----cccccHHHHHHHHHHhccChhhCCCHHHHHHHHHHH
Confidence 111224688999999999999999999999999875
No 141
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=100.00 E-value=5.9e-38 Score=350.67 Aligned_cols=263 Identities=25% Similarity=0.369 Sum_probs=209.8
Q ss_pred cCCCcCCeeeccCCeEEEEEEe-----CCCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCccceEeeEEe--ccCceE
Q 035998 742 NNFDQANIIGCGGFGLVYRATL-----PDGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNLVHLQGYCM--HKNDRL 814 (1020)
Q Consensus 742 ~~~~~~~~lg~G~~g~V~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~--~~~~~~ 814 (1020)
++|++.+.||+|+||.||+|++ .+++.||||++........+.+.+|++++++++||||+++++++. +....+
T Consensus 23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~ 102 (327)
T 3lxl_A 23 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLR 102 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEEE
T ss_pred hhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceEE
Confidence 5789999999999999999984 367899999998776666678999999999999999999999987 445688
Q ss_pred EEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeecccccc
Q 035998 815 LIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARL 894 (1020)
Q Consensus 815 lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~ 894 (1020)
+||||+++++|.+++.... ..+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++.
T Consensus 103 lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~ 176 (327)
T 3lxl_A 103 LVMEYLPSGCLRDFLQRHR---ARLDASRLLLYSSQICKGMEYLGSR---RCVHRDLAARNILVESEAHVKIADFGLAKL 176 (327)
T ss_dssp EEEECCTTCBHHHHHHHHG---GGCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCGGGCEE
T ss_pred EEEeecCCCCHHHHHHhcc---cCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCChhhEEECCCCCEEEccccccee
Confidence 9999999999999997642 3589999999999999999999999 999999999999999999999999999987
Q ss_pred ccCCCCc-ccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCC--------CcccHHHHHHHH
Q 035998 895 ILSPYDT-HVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPK--------GSRDLISWVIRM 965 (1020)
Q Consensus 895 ~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~--------~~~~~~~~~~~~ 965 (1020)
....... .......+++.|+|||++.+..++.++||||+|+++|+|++|+.||...... ............
T Consensus 177 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (327)
T 3lxl_A 177 LPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPALSRLLEL 256 (327)
T ss_dssp CCTTCSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHCC----CCHHHHHHHH
T ss_pred cccCCccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccchhhhhcccccccccHHHHHHH
Confidence 6443222 1223456788899999998889999999999999999999999998532110 000011111111
Q ss_pred HhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 966 RQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 966 ~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
...... ...+......+.+++.+||+.||++|||++|+++.|+++
T Consensus 257 ~~~~~~---------~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~ 301 (327)
T 3lxl_A 257 LEEGQR---------LPAPPACPAEVHELMKLCWAPSPQDRPSFSALGPQLDML 301 (327)
T ss_dssp HHTTCC---------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC
T ss_pred hhcccC---------CCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 111110 011122234688999999999999999999999999876
No 142
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=100.00 E-value=4.9e-38 Score=343.28 Aligned_cols=255 Identities=27% Similarity=0.389 Sum_probs=202.9
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeCC----CCEEEEEEecCCc-hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLPD----GRNVAIKRLSGDC-GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLL 815 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~~----~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 815 (1020)
.++|++.+.||+|+||.||+|++.. +..||||.+.... ....+.+.+|++++++++||||+++++++.+ +..++
T Consensus 11 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~ 89 (281)
T 3cc6_A 11 REDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE-EPTWI 89 (281)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECS-SSCEE
T ss_pred ccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcC-CCCEE
Confidence 4678999999999999999998542 3359999998653 3345678999999999999999999999765 45789
Q ss_pred EEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccc
Q 035998 816 IYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLI 895 (1020)
Q Consensus 816 v~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~ 895 (1020)
||||+++++|.+++... ...+++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++..
T Consensus 90 v~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~ 163 (281)
T 3cc6_A 90 IMELYPYGELGHYLERN---KNSLKVLTLVLYSLQICKAMAYLESI---NCVHRDIAVRNILVASPECVKLGDFGLSRYI 163 (281)
T ss_dssp EEECCTTCBHHHHHHHH---TTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEEETTEEEECCCCGGGCC
T ss_pred EEecCCCCCHHHHHHhc---cccCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCccceEEECCCCcEEeCccCCCccc
Confidence 99999999999999764 24589999999999999999999999 9999999999999999999999999999876
Q ss_pred cCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHc-CCCCCCCCCCCCcccHHHHHHHHHhhcccccc
Q 035998 896 LSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLT-GKRPMDMCKPKGSRDLISWVIRMRQENRESEV 974 (1020)
Q Consensus 896 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 974 (1020)
.... ........+++.|+|||+..+..++.++||||+|+++|||++ |+.||...... +..... .......
T Consensus 164 ~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~---~~~~~~---~~~~~~~-- 234 (281)
T 3cc6_A 164 EDED-YYKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENK---DVIGVL---EKGDRLP-- 234 (281)
T ss_dssp ----------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGG---GHHHHH---HHTCCCC--
T ss_pred cccc-ccccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCChH---HHHHHH---hcCCCCC--
Confidence 4322 122234556889999999988899999999999999999998 99999754332 222111 1111100
Q ss_pred cCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 975 LDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 975 ~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
.+ ......+.+++.+||+.||++||+++|+++.|+++
T Consensus 235 -~~-------~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~ 271 (281)
T 3cc6_A 235 -KP-------DLCPPVLYTLMTRCWDYDPSDRPRFTELVCSLSDV 271 (281)
T ss_dssp -CC-------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred -CC-------CCCCHHHHHHHHHHccCCchhCcCHHHHHHHHHHH
Confidence 01 11123588999999999999999999999999876
No 143
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=100.00 E-value=2.9e-38 Score=358.45 Aligned_cols=249 Identities=22% Similarity=0.325 Sum_probs=198.2
Q ss_pred CCeeeccCCeEEEEEEeC-CCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEEEeccCCCh
Q 035998 747 ANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIYSFMENGSL 825 (1020)
Q Consensus 747 ~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~g~L 825 (1020)
.+.||+|+||.||+|+.. +|+.||+|++........+.+.+|++++++++||||+++++++.+.+..++||||+++++|
T Consensus 94 ~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~~L 173 (373)
T 2x4f_A 94 TEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGGEL 173 (373)
T ss_dssp EEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTCEE
T ss_pred ceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCCcH
Confidence 578999999999999864 6899999999877655667899999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEE--cCCCCeEEeeccccccccCCCCccc
Q 035998 826 DYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILL--DGNFGAHLADFGLARLILSPYDTHV 903 (1020)
Q Consensus 826 ~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll--~~~~~~kl~Dfg~~~~~~~~~~~~~ 903 (1020)
.+++... ...+++..++.++.||+.||+|||+. +|+||||||+||++ +.++.+||+|||+++...... .
T Consensus 174 ~~~l~~~---~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~---~ 244 (373)
T 2x4f_A 174 FDRIIDE---SYNLTELDTILFMKQICEGIRHMHQM---YILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPRE---K 244 (373)
T ss_dssp HHHHHHT---GGGCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTC---B
T ss_pred HHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEEecCCCCcEEEEeCCCceecCCcc---c
Confidence 9888653 23589999999999999999999999 99999999999999 567889999999998764322 2
Q ss_pred ccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccccccCccccCcc
Q 035998 904 TTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVLDPFIYDKQ 983 (1020)
Q Consensus 904 ~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 983 (1020)
.....||+.|+|||++.+..++.++|||||||++|||++|+.||...... .. ...+...... ..+.....
T Consensus 245 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~---~~---~~~i~~~~~~---~~~~~~~~- 314 (373)
T 2x4f_A 245 LKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDA---ET---LNNILACRWD---LEDEEFQD- 314 (373)
T ss_dssp CCCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSHH---HH---HHHHHHTCCC---SCSGGGTT-
T ss_pred cccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHH---HH---HHHHHhccCC---CChhhhcc-
Confidence 33457999999999999999999999999999999999999999753221 11 1111111110 01111111
Q ss_pred CHHHHHHHHHHHhhccCCCCCCCCCHHHHHH--HHH
Q 035998 984 HDKEMLRVLDIACLCLSESPKVRPTTQQLVS--WLD 1017 (1020)
Q Consensus 984 ~~~~~~~l~~li~~cl~~dP~~RPs~~evl~--~L~ 1017 (1020)
....+.+++.+||+.||.+||+++|+++ +++
T Consensus 315 ---~~~~~~~li~~~L~~dp~~Rps~~e~l~hp~~~ 347 (373)
T 2x4f_A 315 ---ISEEAKEFISKLLIKEKSWRISASEALKHPWLS 347 (373)
T ss_dssp ---SCHHHHHHHHTTSCSSGGGSCCHHHHHHSHHHH
T ss_pred ---CCHHHHHHHHHHcCCChhhCCCHHHHhcCcCcC
Confidence 1236889999999999999999999997 554
No 144
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=100.00 E-value=8.9e-38 Score=350.10 Aligned_cols=251 Identities=25% Similarity=0.389 Sum_probs=198.6
Q ss_pred cCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc-hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCc-------
Q 035998 742 NNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC-GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKND------- 812 (1020)
Q Consensus 742 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~------- 812 (1020)
++|++.+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|++++++++||||+++++++.+...
T Consensus 6 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~ 85 (332)
T 3qd2_B 6 TDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEEM 85 (332)
T ss_dssp HHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHHH
T ss_pred hcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhhh
Confidence 56899999999999999999976 79999999997543 3345779999999999999999999999865432
Q ss_pred --------------------------------------------------eEEEEEeccCCChhhhhhhcCCCCCCCCHH
Q 035998 813 --------------------------------------------------RLLIYSFMENGSLDYWLHEKLDGPSSLDWD 842 (1020)
Q Consensus 813 --------------------------------------------------~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~ 842 (1020)
.++||||+++++|.+++..... ....++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~-~~~~~~~ 164 (332)
T 3qd2_B 86 DEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCS-LEDREHG 164 (332)
T ss_dssp HC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCS-GGGSCHH
T ss_pred hhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccC-ccchhhH
Confidence 7899999999999999987532 2345777
Q ss_pred HHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccCCCCc----------ccccccccccC
Q 035998 843 SRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILSPYDT----------HVTTDLVGTLG 912 (1020)
Q Consensus 843 ~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~----------~~~~~~~gt~~ 912 (1020)
.++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++........ .......||+.
T Consensus 165 ~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~ 241 (332)
T 3qd2_B 165 VCLHIFIQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKL 241 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CGG
T ss_pred HHHHHHHHHHHHHHHHHhC---CeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCcC
Confidence 8999999999999999999 9999999999999999999999999999877543211 12234578999
Q ss_pred ccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccccccCccccCccCHHHHHHHH
Q 035998 913 YIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVLDPFIYDKQHDKEMLRVL 992 (1020)
Q Consensus 913 y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ 992 (1020)
|+|||++.+..++.++||||+|+++|||++|..|+. ............ .. + .........+.
T Consensus 242 y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~--------~~~~~~~~~~~~-~~-----~----~~~~~~~~~~~ 303 (332)
T 3qd2_B 242 YMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQM--------ERVRIITDVRNL-KF-----P----LLFTQKYPQEH 303 (332)
T ss_dssp GSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHH--------HHHHHHHHHHTT-CC-----C----HHHHHHCHHHH
T ss_pred ccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChh--------HHHHHHHHhhcc-CC-----C----cccccCChhHH
Confidence 999999999999999999999999999999877642 111111111111 00 1 01122234578
Q ss_pred HHHhhccCCCCCCCCCHHHHHH
Q 035998 993 DIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 993 ~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
+++.+||+.||++|||++|+++
T Consensus 304 ~li~~~l~~~p~~Rps~~~~l~ 325 (332)
T 3qd2_B 304 MMVQDMLSPSPTERPEATDIIE 325 (332)
T ss_dssp HHHHHHHCSSGGGSCCHHHHHH
T ss_pred HHHHHHccCCCCcCCCHHHHhh
Confidence 9999999999999999999997
No 145
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=4.4e-38 Score=344.73 Aligned_cols=255 Identities=23% Similarity=0.364 Sum_probs=205.8
Q ss_pred cCCCcCC-eeeccCCeEEEEEEeC---CCCEEEEEEecCCc-hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEE
Q 035998 742 NNFDQAN-IIGCGGFGLVYRATLP---DGRNVAIKRLSGDC-GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLI 816 (1020)
Q Consensus 742 ~~~~~~~-~lg~G~~g~V~~~~~~---~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 816 (1020)
++|.+.+ .||+|+||.||+|.+. ++..||||++.... ....+.+.+|++++++++||||+++++++ ..+..++|
T Consensus 9 ~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~lv 87 (287)
T 1u59_A 9 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVC-QAEALMLV 87 (287)
T ss_dssp GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-ESSSEEEE
T ss_pred HHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEe-cCCCcEEE
Confidence 4566666 8999999999999853 57789999998753 33456789999999999999999999999 55678999
Q ss_pred EEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeecccccccc
Q 035998 817 YSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLIL 896 (1020)
Q Consensus 817 ~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~ 896 (1020)
|||+++++|.+++... ...+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++...
T Consensus 88 ~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~ 161 (287)
T 1u59_A 88 MEMAGGGPLHKFLVGK---REEIPVSNVAELLHQVSMGMKYLEEK---NFVHRDLAARNVLLVNRHYAKISDFGLSKALG 161 (287)
T ss_dssp EECCTTEEHHHHHTTC---TTTSCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEEETTEEEECCCTTCEECT
T ss_pred EEeCCCCCHHHHHHhC---CccCCHHHHHHHHHHHHHHHHHHHHC---CEeeCCCchheEEEcCCCCEEECcccceeeec
Confidence 9999999999998743 34689999999999999999999999 99999999999999999999999999998764
Q ss_pred CCCCc-ccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHc-CCCCCCCCCCCCcccHHHHHHHHHhhcccccc
Q 035998 897 SPYDT-HVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLT-GKRPMDMCKPKGSRDLISWVIRMRQENRESEV 974 (1020)
Q Consensus 897 ~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 974 (1020)
..... .......+|+.|+|||++.+..++.++||||+|+++|||++ |+.||...... ... ........ ..
T Consensus 162 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~---~~~---~~i~~~~~-~~- 233 (287)
T 1u59_A 162 ADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGP---EVM---AFIEQGKR-ME- 233 (287)
T ss_dssp TCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTH---HHH---HHHHTTCC-CC-
T ss_pred cCcceeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHH---HHH---HHHhcCCc-CC-
Confidence 33221 12233456889999999988889999999999999999999 99999754321 111 11111111 00
Q ss_pred cCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 975 LDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 975 ~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
.+......+.+++.+||+.||++||+++++++.|+++
T Consensus 234 --------~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~ 270 (287)
T 1u59_A 234 --------CPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRAC 270 (287)
T ss_dssp --------CCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred --------CCCCcCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 1112224688999999999999999999999999876
No 146
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=100.00 E-value=4.6e-38 Score=350.04 Aligned_cols=262 Identities=26% Similarity=0.356 Sum_probs=206.3
Q ss_pred ccCCCcCCeeeccCCeEEEEEEe-CCCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCccceEeeEEec----cCceEE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATL-PDGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNLVHLQGYCMH----KNDRLL 815 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~----~~~~~l 815 (1020)
.++|++.+.||+|+||.||+|+. .+++.||||++........+.+.+|++++++++||||+++++++.. ....++
T Consensus 28 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~l 107 (317)
T 2buj_A 28 NKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWL 107 (317)
T ss_dssp TEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEEE
T ss_pred CeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeEE
Confidence 35789999999999999999986 5789999999876655666789999999999999999999999873 346789
Q ss_pred EEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccc
Q 035998 816 IYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLI 895 (1020)
Q Consensus 816 v~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~ 895 (1020)
||||+++|+|.+++.........+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||.++..
T Consensus 108 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~dfg~~~~~ 184 (317)
T 2buj_A 108 LLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAK---GYAHRDLKPTNILLGDEGQPVLMDLGSMNQA 184 (317)
T ss_dssp EEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCSSCEES
T ss_pred EEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEcCCCCEEEEecCcchhc
Confidence 9999999999999987655567899999999999999999999999 9999999999999999999999999998764
Q ss_pred cCCCCc-------ccccccccccCccCccccCCCC---CCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHH
Q 035998 896 LSPYDT-------HVTTDLVGTLGYIPPEYGQASV---ATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRM 965 (1020)
Q Consensus 896 ~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~---~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~ 965 (1020)
...... .......||+.|+|||++.+.. ++.++||||||+++|||++|+.||........ .... ..
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~-~~~~---~~ 260 (317)
T 2buj_A 185 CIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGD-SVAL---AV 260 (317)
T ss_dssp CEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTS-CHHH---HH
T ss_pred ccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccc-hhhH---Hh
Confidence 321110 0112345789999999987654 68899999999999999999999953211111 1110 01
Q ss_pred HhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 966 RQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 966 ~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
...... . ........+.+++.+||+.||.+||+++++++.|+++
T Consensus 261 ~~~~~~---~-------~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~~ 304 (317)
T 2buj_A 261 QNQLSI---P-------QSPRHSSALWQLLNSMMTVDPHQRPHIPLLLSQLEAL 304 (317)
T ss_dssp HCC--C---C-------CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHT
T ss_pred hccCCC---C-------ccccCCHHHHHHHHHHhhcChhhCCCHHHHHHHhhhc
Confidence 110000 0 0111224688999999999999999999999999875
No 147
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=2.3e-37 Score=336.87 Aligned_cols=248 Identities=21% Similarity=0.366 Sum_probs=181.2
Q ss_pred cCCCcCCeeeccCCeEEEEEEe-CCCCEEEEEEecCCc---hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEE
Q 035998 742 NNFDQANIIGCGGFGLVYRATL-PDGRNVAIKRLSGDC---GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIY 817 (1020)
Q Consensus 742 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 817 (1020)
++|++.+.||+|+||.||+|+. .+++.||+|++.... ....+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 13 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 92 (275)
T 2eue_A 13 GNYQIVKTLGEGSFAKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI 92 (275)
T ss_dssp CCBCCCC---------EEEEECTTTCCEEEEEEECSCC-----CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSCEEEEE
T ss_pred cceEEEEEEEcCCCEEEEEEEECCCCCEEEEEEEEhhhcchHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCeEEEEe
Confidence 5799999999999999999985 478999999997643 233467889999999999999999999999999999999
Q ss_pred EeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccC
Q 035998 818 SFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILS 897 (1020)
Q Consensus 818 e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~ 897 (1020)
||+ ++++.+++... ..+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++....
T Consensus 93 e~~-~~~l~~~~~~~----~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~ 164 (275)
T 2eue_A 93 EYA-GNELFDYIVQR----DKMSEQEARRFFQQIISAVEYCHRH---KIVHRDLKPENLLLDEHLNVKIADFGLSNIMTD 164 (275)
T ss_dssp ECC-CEEHHHHHHTS----SSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTSCEEECCSSCC-----
T ss_pred hhc-CCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHC---CCeeccCChHhEEECCCCCEEEeecccceeccC
Confidence 999 66777777653 4689999999999999999999999 999999999999999999999999999976533
Q ss_pred CCCcccccccccccCccCccccCCCCC-CchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccccccC
Q 035998 898 PYDTHVTTDLVGTLGYIPPEYGQASVA-TYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVLD 976 (1020)
Q Consensus 898 ~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 976 (1020)
. .......||+.|+|||++.+..+ +.++||||+|+++|||++|+.||..... ............ ..
T Consensus 165 ~---~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~------~~~~~~~~~~~~--~~-- 231 (275)
T 2eue_A 165 G---NFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESI------PVLFKNISNGVY--TL-- 231 (275)
T ss_dssp -------------CTTCCHHHHCC-----THHHHHHHHHHHHHHHHSSCSSCCSSH------HHHHHHHHHTCC--CC--
T ss_pred c---ccccCCCCCcCcCCceeeeCCCCCCcccchHHHHHHHHHHHhCCCCCCCCCH------HHHHHHHHhCCC--CC--
Confidence 2 22334568999999999887765 7899999999999999999999964321 111111111110 00
Q ss_pred ccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH--HHH
Q 035998 977 PFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS--WLD 1017 (1020)
Q Consensus 977 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~--~L~ 1017 (1020)
+ ......+.+++.+||+.||.+|||++|+++ +++
T Consensus 232 ~-------~~~~~~~~~li~~~l~~dP~~Rps~~e~l~h~~f~ 267 (275)
T 2eue_A 232 P-------KFLSPGAAGLIKRMLIVNPLNRISIHEIMQDDWFK 267 (275)
T ss_dssp C-------TTSCHHHHHHHHHHSCSSGGGSCCHHHHTTCHHHH
T ss_pred C-------ccCCHHHHHHHHHHhhcCHhHCCCHHHHhhCCeec
Confidence 0 111235789999999999999999999986 544
No 148
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=100.00 E-value=3.1e-37 Score=342.09 Aligned_cols=261 Identities=23% Similarity=0.353 Sum_probs=200.3
Q ss_pred ccCCCcCCeeeccCCeEEEEEEe-CCCCEEEEEEecCCc---hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATL-PDGRNVAIKRLSGDC---GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLI 816 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 816 (1020)
.++|++.+.||+|+||.||+|.. .+++.||||++.... ......+.+|++++++++||||+++++++.+.+..++|
T Consensus 31 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv 110 (310)
T 2wqm_A 31 LANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIV 110 (310)
T ss_dssp GGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred ccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEE
Confidence 35799999999999999999986 478999999997532 33456788999999999999999999999999999999
Q ss_pred EEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeecccccccc
Q 035998 817 YSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLIL 896 (1020)
Q Consensus 817 ~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~ 896 (1020)
|||+++++|.+++.........+++..++.++.|++.||+|||+. +++||||||+||+++.++.+||+|||+++...
T Consensus 111 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~ 187 (310)
T 2wqm_A 111 LELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSR---RVMHRDIKPANVFITATGVVKLGDLGLGRFFS 187 (310)
T ss_dssp EECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCC-------
T ss_pred EecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCcHHHEEEcCCCCEEEEeccceeeec
Confidence 999999999999976544456789999999999999999999999 99999999999999999999999999998654
Q ss_pred CCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccccccC
Q 035998 897 SPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVLD 976 (1020)
Q Consensus 897 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 976 (1020)
... .......|++.|+|||++.+..++.++||||||+++|||++|+.||..... .............. ...
T Consensus 188 ~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~----~~~~~~~~~~~~~~-~~~-- 258 (310)
T 2wqm_A 188 SKT--TAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKM----NLYSLCKKIEQCDY-PPL-- 258 (310)
T ss_dssp -------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---C----CHHHHHHHHHTTCS-CCC--
T ss_pred CCC--ccccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccch----hHHHHHHHhhcccC-CCC--
Confidence 321 222345789999999999999999999999999999999999999964322 11122222221111 110
Q ss_pred ccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 977 PFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 977 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
.... ....+.+++.+||+.||++||+++++++.|+++
T Consensus 259 --~~~~----~~~~l~~li~~~l~~dp~~Rps~~~il~~l~~l 295 (310)
T 2wqm_A 259 --PSDH----YSEELRQLVNMCINPDPEKRPDVTYVYDVAKRM 295 (310)
T ss_dssp --CTTT----SCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred --cccc----cCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHH
Confidence 0011 123588999999999999999999999999875
No 149
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=100.00 E-value=1.5e-37 Score=337.37 Aligned_cols=250 Identities=23% Similarity=0.344 Sum_probs=203.2
Q ss_pred cCCCcCCeeeccCCeEEEEEEeCCCCEEEEEEecCCc--hhhHHHHHHHHHHHHHcCCCccceEeeEEecc--CceEEEE
Q 035998 742 NNFDQANIIGCGGFGLVYRATLPDGRNVAIKRLSGDC--GQMEREFRAEVEALSRAQHPNLVHLQGYCMHK--NDRLLIY 817 (1020)
Q Consensus 742 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--~~~~lv~ 817 (1020)
++|++.+.||+|+||.||+|+++ ++.||||++.... ....+.+.+|++++++++||||+++++++.+. ...++||
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~-~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~ 88 (271)
T 3kmu_A 10 KQLNFLTKLNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLIT 88 (271)
T ss_dssp GGCEEEEEEEEETTEEEEEEEET-TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEEE
T ss_pred HHhHHHHHhcCCCcceEEEEEEC-CeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEeee
Confidence 57899999999999999999985 8899999997653 33456789999999999999999999999887 7789999
Q ss_pred EeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCC--eEecCCCCCCEEEcCCCCeEEeeccccccc
Q 035998 818 SFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPH--ILHRDIKSSNILLDGNFGAHLADFGLARLI 895 (1020)
Q Consensus 818 e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~--ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~ 895 (1020)
||+++|+|.+++... ....+++..++.++.|++.||+|||+. + |+||||||+||+++.++.++++|||++...
T Consensus 89 e~~~~~~L~~~l~~~--~~~~~~~~~~~~i~~qi~~~l~~lH~~---~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~ 163 (271)
T 3kmu_A 89 HWMPYGSLYNVLHEG--TNFVVDQSQAVKFALDMARGMAFLHTL---EPLIPRHALNSRSVMIDEDMTARISMADVKFSF 163 (271)
T ss_dssp ECCTTCBHHHHHHSC--SSCCCCHHHHHHHHHHHHHHHHHHTTS---SSCCTTCCCSGGGEEECTTSCEEEEGGGSCCTT
T ss_pred cccCCCcHHHHHhhc--ccCCCCHHHHHHHHHHHHHHHHHHhcC---CCceecCCCccceEEEcCCcceeEEeccceeee
Confidence 999999999999864 223689999999999999999999998 7 999999999999999999999999987543
Q ss_pred cCCCCcccccccccccCccCccccCCCCCCc---hhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccc
Q 035998 896 LSPYDTHVTTDLVGTLGYIPPEYGQASVATY---KGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRES 972 (1020)
Q Consensus 896 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~---~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~ 972 (1020)
.. ....||+.|+|||.+.+..++. ++||||+|+++|||++|+.||..... ..............
T Consensus 164 ~~-------~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~------~~~~~~~~~~~~~~ 230 (271)
T 3kmu_A 164 QS-------PGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSN------MEIGMKVALEGLRP 230 (271)
T ss_dssp SC-------TTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCH------HHHHHHHHHSCCCC
T ss_pred cc-------cCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccCh------HHHHHHHHhcCCCC
Confidence 21 2346789999999987765444 89999999999999999999974322 11111111111111
Q ss_pred cccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 973 EVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 973 ~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
. ... .....+.+++.+||+.||++|||++|+++.|+++
T Consensus 231 ~-----~~~----~~~~~~~~li~~~l~~~p~~Rps~~~il~~L~~l 268 (271)
T 3kmu_A 231 T-----IPP----GISPHVSKLMKICMNEDPAKRPKFDMIVPILEKM 268 (271)
T ss_dssp C-----CCT----TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred C-----CCC----CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHh
Confidence 1 111 1223588999999999999999999999999976
No 150
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=100.00 E-value=9.4e-38 Score=367.51 Aligned_cols=253 Identities=25% Similarity=0.386 Sum_probs=206.5
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc---hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC---GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLI 816 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 816 (1020)
.++|++.+.||+|+||.||+|+.. +|+.||||++.... ......+.+|++++++++||||+++++++.+.+..++|
T Consensus 183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV 262 (576)
T 2acx_A 183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLV 262 (576)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEE
Confidence 467899999999999999999875 68999999986532 12345678999999999999999999999999999999
Q ss_pred EEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeecccccccc
Q 035998 817 YSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLIL 896 (1020)
Q Consensus 817 ~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~ 896 (1020)
|||++||+|.+++... ....+++..++.++.||+.||+|||++ +||||||||+||+++.++.+||+|||+++...
T Consensus 263 mEy~~gg~L~~~l~~~--~~~~l~e~~~~~i~~qIl~aL~yLH~~---gIvHrDLKPeNILld~~g~vKL~DFGla~~~~ 337 (576)
T 2acx_A 263 LTLMNGGDLKFHIYHM--GQAGFPEARAVFYAAEICCGLEDLHRE---RIVYRDLKPENILLDDHGHIRISDLGLAVHVP 337 (576)
T ss_dssp ECCCCSCBHHHHHHSS--SSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCTTCEECC
T ss_pred EEcCCCCcHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHHHHHC---CEeccCCchheEEEeCCCCeEEEecccceecc
Confidence 9999999999998764 234589999999999999999999999 99999999999999999999999999998764
Q ss_pred CCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccccccC
Q 035998 897 SPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVLD 976 (1020)
Q Consensus 897 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 976 (1020)
.. .......||+.|+|||++.+..++.++||||+||++|||++|+.||...........+.. .... ... .
T Consensus 338 ~~---~~~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~~~~~i~~--~i~~-~~~-~--- 407 (576)
T 2acx_A 338 EG---QTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVER--LVKE-VPE-E--- 407 (576)
T ss_dssp TT---CCEECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCCCHHHHHH--HHHH-CCC-C---
T ss_pred cC---ccccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccchhHHHHHH--Hhhc-ccc-c---
Confidence 32 223345899999999999999999999999999999999999999976543322222211 1111 100 0
Q ss_pred ccccCccCHHHHHHHHHHHhhccCCCCCCCC-----CHHHHHH
Q 035998 977 PFIYDKQHDKEMLRVLDIACLCLSESPKVRP-----TTQQLVS 1014 (1020)
Q Consensus 977 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RP-----s~~evl~ 1014 (1020)
+ +......+.+++.+||+.||.+|| +++|+++
T Consensus 408 --~----p~~~s~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~ 444 (576)
T 2acx_A 408 --Y----SERFSPQARSLCSQLLCKDPAERLGCRGGSAREVKE 444 (576)
T ss_dssp --C----CTTSCHHHHHHHHHHTCSSGGGSTTCSSSHHHHHHT
T ss_pred --C----CccCCHHHHHHHHHhccCCHHHcCCCCCCCHHHHHh
Confidence 0 011123688999999999999999 7888875
No 151
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=100.00 E-value=1.6e-38 Score=349.09 Aligned_cols=256 Identities=22% Similarity=0.384 Sum_probs=203.4
Q ss_pred hccCCCcCC-eeeccCCeEEEEEEe---CCCCEEEEEEecCCc--hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCce
Q 035998 740 STNNFDQAN-IIGCGGFGLVYRATL---PDGRNVAIKRLSGDC--GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDR 813 (1020)
Q Consensus 740 ~~~~~~~~~-~lg~G~~g~V~~~~~---~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 813 (1020)
..++|++.+ .||+|+||.||+|.+ .+++.||||++.... ....+.+.+|++++++++||||+++++++ +.+..
T Consensus 14 ~~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~~~~~ 92 (291)
T 1xbb_A 14 DRKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-EAESW 92 (291)
T ss_dssp CGGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-ESSSE
T ss_pred cchhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-CCCCc
Confidence 346788887 999999999999964 246789999997653 22356789999999999999999999998 56778
Q ss_pred EEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccc
Q 035998 814 LLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLAR 893 (1020)
Q Consensus 814 ~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~ 893 (1020)
++||||+++++|.+++... ..+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++
T Consensus 93 ~lv~e~~~~~~L~~~l~~~----~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~ 165 (291)
T 1xbb_A 93 MLVMEMAELGPLNKYLQQN----RHVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSK 165 (291)
T ss_dssp EEEEECCTTEEHHHHHHHC----TTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCCTTCE
T ss_pred EEEEEeCCCCCHHHHHHhC----cCCCHHHHHHHHHHHHHHHHHHHhC---CeEcCCCCcceEEEeCCCcEEEccCCcce
Confidence 9999999999999999864 4589999999999999999999999 99999999999999999999999999998
Q ss_pred cccCCCCc-ccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHc-CCCCCCCCCCCCcccHHHHHHHHHhhccc
Q 035998 894 LILSPYDT-HVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLT-GKRPMDMCKPKGSRDLISWVIRMRQENRE 971 (1020)
Q Consensus 894 ~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~ 971 (1020)
........ .......+++.|+|||.+.+..++.++||||+|+++|||++ |+.||...... .. .........
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~---~~---~~~~~~~~~- 238 (291)
T 1xbb_A 166 ALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS---EV---TAMLEKGER- 238 (291)
T ss_dssp ECCTTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHH---HH---HHHHHTTCC-
T ss_pred eeccCCCcccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCHH---HH---HHHHHcCCC-
Confidence 76443222 11223456788999999988889999999999999999999 99999753321 11 111111111
Q ss_pred ccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 972 SEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 972 ~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
.. .+......+.+++.+||+.||.+||+++++++.|+++
T Consensus 239 ~~---------~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~ 277 (291)
T 1xbb_A 239 MG---------CPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNY 277 (291)
T ss_dssp CC---------CCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred CC---------CCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 10 0111224688999999999999999999999999876
No 152
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=100.00 E-value=3.6e-37 Score=352.95 Aligned_cols=251 Identities=23% Similarity=0.304 Sum_probs=191.3
Q ss_pred cCCCcC-CeeeccCCeEEEEEEeC-CCCEEEEEEecCCchhhHHHHHHHHHHHHH-cCCCccceEeeEEec----cCceE
Q 035998 742 NNFDQA-NIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCGQMEREFRAEVEALSR-AQHPNLVHLQGYCMH----KNDRL 814 (1020)
Q Consensus 742 ~~~~~~-~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~-l~h~niv~l~~~~~~----~~~~~ 814 (1020)
++|.+. +.||+|+||.||+|+.. +++.||||++... ..+.+|++++.+ .+||||+++++++.. ....+
T Consensus 61 ~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~-----~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~ 135 (400)
T 1nxk_A 61 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLL 135 (400)
T ss_dssp GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEE
T ss_pred ccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCcc-----hhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEE
Confidence 456665 68999999999999865 6889999999643 346678888744 589999999999875 56689
Q ss_pred EEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcC---CCCeEEeeccc
Q 035998 815 LIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDG---NFGAHLADFGL 891 (1020)
Q Consensus 815 lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~---~~~~kl~Dfg~ 891 (1020)
+||||+++|+|.+++... ....+++..+..++.||+.||+|||+. +|+||||||+||+++. ++.+||+|||+
T Consensus 136 lv~E~~~gg~L~~~l~~~--~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~~~kl~DFG~ 210 (400)
T 1nxk_A 136 IVMECLDGGELFSRIQDR--GDQAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLTDFGF 210 (400)
T ss_dssp EEEECCCSEEHHHHHHCC-----CCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSTTCCEEECCCTT
T ss_pred EEEEeCCCCcHHHHHHHh--CCCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCcCcceEEEecCCCCccEEEEeccc
Confidence 999999999999999864 234689999999999999999999999 9999999999999987 78999999999
Q ss_pred cccccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhccc
Q 035998 892 ARLILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRE 971 (1020)
Q Consensus 892 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~ 971 (1020)
++..... .......||+.|+|||++.+..++.++||||+||++|||++|+.||............... +.....
T Consensus 211 a~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~--i~~~~~- 284 (400)
T 1nxk_A 211 AKETTSH---NSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTR--IRMGQY- 284 (400)
T ss_dssp CEECC--------------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHHHH--HHHTCC-
T ss_pred ccccCCC---CccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHHHH--HHcCcc-
Confidence 9875322 2234567899999999999999999999999999999999999999765443322111111 111110
Q ss_pred ccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 972 SEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 972 ~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
....+ .. ......+.+++.+||+.||++|||++|+++
T Consensus 285 -~~~~~-~~----~~~s~~~~~li~~~L~~dP~~Rpt~~eil~ 321 (400)
T 1nxk_A 285 -EFPNP-EW----SEVSEEVKMLIRNLLKTEPTQRMTITEFMN 321 (400)
T ss_dssp -CCCTT-TT----TTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred -cCCCc-cc----ccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 00000 00 112235889999999999999999999987
No 153
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.1e-38 Score=359.41 Aligned_cols=255 Identities=28% Similarity=0.452 Sum_probs=193.9
Q ss_pred CCCcCCeeeccCCeEEEEEEeC--CC--CEEEEEEecCCc-hhhHHHHHHHHHHHHHcCCCccceEeeEEec-cCceEEE
Q 035998 743 NFDQANIIGCGGFGLVYRATLP--DG--RNVAIKRLSGDC-GQMEREFRAEVEALSRAQHPNLVHLQGYCMH-KNDRLLI 816 (1020)
Q Consensus 743 ~~~~~~~lg~G~~g~V~~~~~~--~~--~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~-~~~~~lv 816 (1020)
.|++.+.||+|+||.||+|++. ++ ..||||.+.... ....+.+.+|++++++++||||+++++++.+ .+..++|
T Consensus 90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~lv 169 (373)
T 3c1x_A 90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVV 169 (373)
T ss_dssp EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEEE
T ss_pred eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEEE
Confidence 4677889999999999999863 22 368999987543 3445678999999999999999999999765 4578999
Q ss_pred EEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeecccccccc
Q 035998 817 YSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLIL 896 (1020)
Q Consensus 817 ~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~ 896 (1020)
|||+++|+|.+++... ...+++..++.++.||++||+|||++ +|+||||||+||+++.++.+||+|||+++...
T Consensus 170 ~e~~~~g~L~~~l~~~---~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~ 243 (373)
T 3c1x_A 170 LPYMKHGDLRNFIRNE---THNPTVKDLIGFGLQVAKGMKFLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMY 243 (373)
T ss_dssp EECCTTCBHHHHHHCT---TCCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCC-------
T ss_pred EECCCCCCHHHHHhhc---ccCCCHHHHHHHHHHHHHHHHHHHHC---CEecCccchheEEECCCCCEEEeecccccccc
Confidence 9999999999999753 34678999999999999999999999 99999999999999999999999999998764
Q ss_pred CCCCc--ccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHc-CCCCCCCCCCCCcccHHHHHHHHHhhccccc
Q 035998 897 SPYDT--HVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLT-GKRPMDMCKPKGSRDLISWVIRMRQENRESE 973 (1020)
Q Consensus 897 ~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 973 (1020)
..... .......+++.|+|||++.+..++.++||||||+++|||+| |.+||......+. ... ......
T Consensus 244 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~~~---~~~---~~~~~~--- 314 (373)
T 3c1x_A 244 DKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDI---TVY---LLQGRR--- 314 (373)
T ss_dssp --------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSSCH---HHH---HHTTCC---
T ss_pred ccccccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHHHH---HHH---HHcCCC---
Confidence 32211 12233567789999999999999999999999999999999 7778865443322 111 111111
Q ss_pred ccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 974 VLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 974 ~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
...| ......+.+++.+||+.||++||+++|+++.|+++
T Consensus 315 ~~~p-------~~~~~~l~~li~~cl~~dp~~RPs~~ell~~L~~i 353 (373)
T 3c1x_A 315 LLQP-------EYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAI 353 (373)
T ss_dssp CCCC-------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCC-------CCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 0111 11223688999999999999999999999999876
No 154
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=100.00 E-value=6.1e-38 Score=348.02 Aligned_cols=261 Identities=24% Similarity=0.326 Sum_probs=199.0
Q ss_pred cCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCch--hhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEEE
Q 035998 742 NNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCG--QMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIYS 818 (1020)
Q Consensus 742 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 818 (1020)
++|++.+.||+|+||.||+|+.. +|+.||||++..... ...+.+.+|++++++++||||+++++++.+.+..++|||
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 82 (311)
T 4agu_A 3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFE 82 (311)
T ss_dssp CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEEE
Confidence 57999999999999999999875 589999999865542 334668899999999999999999999999999999999
Q ss_pred eccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccCC
Q 035998 819 FMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILSP 898 (1020)
Q Consensus 819 ~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~ 898 (1020)
|+++++|..++... ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++.....
T Consensus 83 ~~~~~~l~~~~~~~----~~~~~~~~~~i~~~l~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 155 (311)
T 4agu_A 83 YCDHTVLHELDRYQ----RGVPEHLVKSITWQTLQAVNFCHKH---NCIHRDVKPENILITKHSVIKLCDFGFARLLTGP 155 (311)
T ss_dssp CCSEEHHHHHHHTS----SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECC--
T ss_pred eCCCchHHHHHhhh----cCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCChhhEEEcCCCCEEEeeCCCchhccCc
Confidence 99999998887653 4689999999999999999999999 9999999999999999999999999999876432
Q ss_pred CCcccccccccccCccCccccCC-CCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHh----------
Q 035998 899 YDTHVTTDLVGTLGYIPPEYGQA-SVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQ---------- 967 (1020)
Q Consensus 899 ~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~---------- 967 (1020)
. .......||+.|+|||++.+ ..++.++||||+|+++|+|++|+.||......+ ..........
T Consensus 156 ~--~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 230 (311)
T 4agu_A 156 S--DYYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVD---QLYLIRKTLGDLIPRHQQVF 230 (311)
T ss_dssp ------------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH---HHHHHHHHHCSCCHHHHHHH
T ss_pred c--cccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHH---HHHHHHHHhccccccccccc
Confidence 2 22334578999999998865 678999999999999999999999997543221 1111111100
Q ss_pred --hccc--ccccCccccCc---cCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 968 --ENRE--SEVLDPFIYDK---QHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 968 --~~~~--~~~~d~~~~~~---~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
.... ....++..... ..+.....+.+++.+||+.||++|||++|+++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 284 (311)
T 4agu_A 231 STNQYFSGVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQLLH 284 (311)
T ss_dssp HTCGGGTTCCCCCCSSCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHT
T ss_pred ccccccccCcCCCccccchhhhhcccccHHHHHHHHHHccCChhhcCCHHHHhc
Confidence 0000 00011100000 00122345889999999999999999999986
No 155
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-37 Score=343.86 Aligned_cols=253 Identities=27% Similarity=0.473 Sum_probs=196.9
Q ss_pred cCCCcCCeeeccCCeEEEEEEeCCCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEEEecc
Q 035998 742 NNFDQANIIGCGGFGLVYRATLPDGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIYSFME 821 (1020)
Q Consensus 742 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~ 821 (1020)
++|++.+.||+|+||.||+|++. ++.||||++... ...+.+.+|++++++++||||+++++++. +..++||||++
T Consensus 8 ~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~--~~~~~~~~E~~~l~~l~hp~iv~~~~~~~--~~~~lv~e~~~ 82 (307)
T 2eva_A 8 KEIEVEEVVGRGAFGVVCKAKWR-AKDVAIKQIESE--SERKAFIVELRQLSRVNHPNIVKLYGACL--NPVCLVMEYAE 82 (307)
T ss_dssp GGEEEEEEEECCSSSEEEEEEET-TEEEEEEECSST--THHHHHHHHHHHHHHCCCTTBCCEEEBCT--TTTEEEEECCT
T ss_pred hHeeeeeEeecCCCceEEEEEEC-CeeEEEEEecCh--hHHHHHHHHHHHHhcCCCCCcCeEEEEEc--CCcEEEEEcCC
Confidence 56888999999999999999985 788999999754 33567899999999999999999999876 45799999999
Q ss_pred CCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCC-eEEeeccccccccCCCC
Q 035998 822 NGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFG-AHLADFGLARLILSPYD 900 (1020)
Q Consensus 822 ~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~-~kl~Dfg~~~~~~~~~~ 900 (1020)
+++|.+++.... ....+++..++.++.|+++||+|||+....+|+||||||+||+++.++. +||+|||+++.....
T Consensus 83 ~~~L~~~l~~~~-~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~-- 159 (307)
T 2eva_A 83 GGSLYNVLHGAE-PLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTH-- 159 (307)
T ss_dssp TCBHHHHHHCSS-SEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC---------
T ss_pred CCCHHHHHhccC-CCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEcccccccccccc--
Confidence 999999997642 2235788999999999999999999932239999999999999998887 799999999765321
Q ss_pred cccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccccccCcccc
Q 035998 901 THVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVLDPFIY 980 (1020)
Q Consensus 901 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 980 (1020)
.....||+.|+|||++.+..++.++||||||+++|||++|+.||....... ............ .. ..
T Consensus 160 ---~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~----~~~~~~~~~~~~-~~-----~~ 226 (307)
T 2eva_A 160 ---MTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPA----FRIMWAVHNGTR-PP-----LI 226 (307)
T ss_dssp --------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSH----HHHHHHHHTTCC-CC-----CB
T ss_pred ---cccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccH----HHHHHHHhcCCC-CC-----cc
Confidence 223468999999999999999999999999999999999999997543221 111111111111 11 11
Q ss_pred CccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 981 DKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 981 ~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
.. ....+.+++.+||+.||++|||++++++.|+++
T Consensus 227 ~~----~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~ 261 (307)
T 2eva_A 227 KN----LPKPIESLMTRCWSKDPSQRPSMEEIVKIMTHL 261 (307)
T ss_dssp TT----CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred cc----cCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHH
Confidence 11 123588999999999999999999999999875
No 156
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=5.1e-38 Score=351.70 Aligned_cols=257 Identities=27% Similarity=0.431 Sum_probs=200.9
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeCC-----CCEEEEEEecCCc-hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLPD-----GRNVAIKRLSGDC-GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRL 814 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~~-----~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 814 (1020)
.++|+..+.||+|+||.||+|.... +..||||++.... ......+.+|++++++++||||+++++++.+.+..+
T Consensus 43 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 122 (333)
T 1mqb_A 43 PSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMM 122 (333)
T ss_dssp TTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEE
T ss_pred hHHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcE
Confidence 3568888999999999999998642 2359999997653 334457889999999999999999999999999999
Q ss_pred EEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeecccccc
Q 035998 815 LIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARL 894 (1020)
Q Consensus 815 lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~ 894 (1020)
+||||+++++|.+++... ...+++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++.
T Consensus 123 lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~ 196 (333)
T 1mqb_A 123 IITEYMENGALDKFLREK---DGEFSVLQLVGMLRGIAAGMKYLANM---NYVHRDLAARNILVNSNLVCKVSDFGLSRV 196 (333)
T ss_dssp EEEECCTTEEHHHHHHHT---TTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCCCC---
T ss_pred EEEeCCCCCcHHHHHHhC---CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChheEEECCCCcEEECCCCcchh
Confidence 999999999999999764 34689999999999999999999999 999999999999999999999999999987
Q ss_pred ccCCCCc-ccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHc-CCCCCCCCCCCCcccHHHHHHHHHhhcccc
Q 035998 895 ILSPYDT-HVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLT-GKRPMDMCKPKGSRDLISWVIRMRQENRES 972 (1020)
Q Consensus 895 ~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~ 972 (1020)
....... .......+++.|+|||++.+..++.++||||+|+++|||++ |+.||...... . ....+.......
T Consensus 197 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~---~---~~~~~~~~~~~~ 270 (333)
T 1mqb_A 197 LEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNH---E---VMKAINDGFRLP 270 (333)
T ss_dssp --------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH---H---HHHHHHTTCCCC
T ss_pred hccccccccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCHH---H---HHHHHHCCCcCC
Confidence 6432211 11223456788999999999999999999999999999999 99999643221 1 111111111110
Q ss_pred cccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 973 EVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 973 ~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
. +......+.+++.+||+.||++||+++++++.|+++
T Consensus 271 ---~-------~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~ 307 (333)
T 1mqb_A 271 ---T-------PMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKL 307 (333)
T ss_dssp ---C-------CTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred ---C-------cccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 0 111224688999999999999999999999999875
No 157
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=100.00 E-value=1.1e-37 Score=347.31 Aligned_cols=249 Identities=21% Similarity=0.315 Sum_probs=180.2
Q ss_pred CCeeeccCCeEEEEEEeC-CCCEEEEEEecCCchhhHHHHHHHHHHHHHcC-CCccceEeeEEeccCceEEEEEeccCCC
Q 035998 747 ANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCGQMEREFRAEVEALSRAQ-HPNLVHLQGYCMHKNDRLLIYSFMENGS 824 (1020)
Q Consensus 747 ~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e~~~~g~ 824 (1020)
.+.||+|+||.||+|... +++.||||++... ....+.+|+++++.+. ||||+++++++.+....++||||+++|+
T Consensus 16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~~ 92 (325)
T 3kn6_A 16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKR---MEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGE 92 (325)
T ss_dssp SCCSEEETTEEEEEEEETTTCCEEEEEEEEGG---GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCB
T ss_pred CCccccCCCeEEEEEEECCCCCEEEEEEEChh---hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCCc
Confidence 478999999999999875 6899999999753 3456788999999997 9999999999999999999999999999
Q ss_pred hhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCC---CeEEeeccccccccCCCCc
Q 035998 825 LDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNF---GAHLADFGLARLILSPYDT 901 (1020)
Q Consensus 825 L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~---~~kl~Dfg~~~~~~~~~~~ 901 (1020)
|.+++... ..+++.++..++.|++.||+|||++ +|+||||||+||+++.++ .+||+|||+++..... .
T Consensus 93 L~~~l~~~----~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~--~ 163 (325)
T 3kn6_A 93 LFERIKKK----KHFSETEASYIMRKLVSAVSHMHDV---GVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPD--N 163 (325)
T ss_dssp HHHHHHHC----SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEC----CEEEECCCTTCEECCC----
T ss_pred HHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHC---CCeecCCCHHHEEEecCCCcccEEEeccccceecCCC--C
Confidence 99999864 4689999999999999999999999 999999999999998765 7999999999865332 2
Q ss_pred ccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcc-cHHHHHHHHHhhcccccccCcccc
Q 035998 902 HVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSR-DLISWVIRMRQENRESEVLDPFIY 980 (1020)
Q Consensus 902 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~ 980 (1020)
.......||+.|+|||++.+..++.++||||+|+++|||++|+.||......... ........+..... . ..+..
T Consensus 164 ~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~i~~~~~-~--~~~~~- 239 (325)
T 3kn6_A 164 QPLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIKKGDF-S--FEGEA- 239 (325)
T ss_dssp --------------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHHHHTTTCC-C--CCSHH-
T ss_pred CcccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHHHHHcCCC-C--CCccc-
Confidence 2234457899999999999999999999999999999999999999764432211 12222222221111 0 01000
Q ss_pred CccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 981 DKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 981 ~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
.......+.+++.+||+.||.+|||++|+++
T Consensus 240 ---~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~ 270 (325)
T 3kn6_A 240 ---WKNVSQEAKDLIQGLLTVDPNKRLKMSGLRY 270 (325)
T ss_dssp ---HHTSCHHHHHHHHHHHCCCTTTCCCTTTSTT
T ss_pred ---ccCCCHHHHHHHHHHCCCChhHCCCHHHHhc
Confidence 0112346889999999999999999999874
No 158
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=100.00 E-value=1.9e-38 Score=352.94 Aligned_cols=258 Identities=28% Similarity=0.435 Sum_probs=204.3
Q ss_pred CCcCCeeeccCCeEEEEEEeC-----CCCEEEEEEecCCch-hhHHHHHHHHHHHHHcCCCccceEeeEEecc--CceEE
Q 035998 744 FDQANIIGCGGFGLVYRATLP-----DGRNVAIKRLSGDCG-QMEREFRAEVEALSRAQHPNLVHLQGYCMHK--NDRLL 815 (1020)
Q Consensus 744 ~~~~~~lg~G~~g~V~~~~~~-----~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--~~~~l 815 (1020)
|++.+.||+|+||.||++.+. +++.||||++..... ...+.+.+|++++++++||||+++++++.+. ...++
T Consensus 33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~l 112 (318)
T 3lxp_A 33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQL 112 (318)
T ss_dssp EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEEE
T ss_pred HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEEE
Confidence 488999999999999998653 678899999986643 3456789999999999999999999999874 56789
Q ss_pred EEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccc
Q 035998 816 IYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLI 895 (1020)
Q Consensus 816 v~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~ 895 (1020)
||||+++++|.+++... .+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++..
T Consensus 113 v~e~~~~~~L~~~l~~~-----~~~~~~~~~i~~~l~~~l~~LH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~ 184 (318)
T 3lxp_A 113 VMEYVPLGSLRDYLPRH-----SIGLAQLLLFAQQICEGMAYLHAQ---HYIHRDLAARNVLLDNDRLVKIGDFGLAKAV 184 (318)
T ss_dssp EECCCTTCBHHHHGGGS-----CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCGGGCEEC
T ss_pred EEecccCCcHHHHHhhC-----CCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEEcCCCCEEECCccccccc
Confidence 99999999999999764 489999999999999999999999 9999999999999999999999999999876
Q ss_pred cCCCCc-ccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCC---------CcccHHHHHHHH
Q 035998 896 LSPYDT-HVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPK---------GSRDLISWVIRM 965 (1020)
Q Consensus 896 ~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~---------~~~~~~~~~~~~ 965 (1020)
...... .......++..|+|||++.+..++.++||||+|+++|||++|+.||...... ............
T Consensus 185 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (318)
T 3lxp_A 185 PEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLTELL 264 (318)
T ss_dssp CTTCSEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred cccccccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhhhhhhcccccchhHHHHHHHH
Confidence 543221 2233456788899999999889999999999999999999999998642110 000000111111
Q ss_pred HhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 966 RQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 966 ~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
..... ...+......+.+++.+||+.||++|||++|+++.|+++
T Consensus 265 ~~~~~----------~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l 308 (318)
T 3lxp_A 265 ERGER----------LPRPDKCPAEVYHLMKNCWETEASFRPTFENLIPILKTV 308 (318)
T ss_dssp HTTCC----------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred hcccC----------CCCCccccHHHHHHHHHHcCCCcccCcCHHHHHHHHHHH
Confidence 11100 011112234688999999999999999999999999876
No 159
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=4.8e-38 Score=348.22 Aligned_cols=262 Identities=26% Similarity=0.354 Sum_probs=198.7
Q ss_pred ccCCCcCCeeeccCCeEEEEEEe-CCCCEEEEEEecCCc-----hhhHHHHHHHHHHHHHcC---CCccceEeeEEeccC
Q 035998 741 TNNFDQANIIGCGGFGLVYRATL-PDGRNVAIKRLSGDC-----GQMEREFRAEVEALSRAQ---HPNLVHLQGYCMHKN 811 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~-----~~~~~~~~~E~~~l~~l~---h~niv~l~~~~~~~~ 811 (1020)
.++|++.+.||+|+||.||+|+. .+++.||||++.... ......+.+|++++++++ ||||+++++++....
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~~ 87 (308)
T 3g33_A 8 TSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATSR 87 (308)
T ss_dssp --CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEECC
T ss_pred ccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeeccC
Confidence 57899999999999999999996 478999999986332 112345667787777764 999999999998755
Q ss_pred -----ceEEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEE
Q 035998 812 -----DRLLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHL 886 (1020)
Q Consensus 812 -----~~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl 886 (1020)
..++||||++ ++|.+++.... ...+++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||
T Consensus 88 ~~~~~~~~lv~e~~~-~~L~~~~~~~~--~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~~~~~~~kl 161 (308)
T 3g33_A 88 TDREIKVTLVFEHVD-QDLRTYLDKAP--PPGLPAETIKDLMRQFLRGLDFLHAN---CIVHRDLKPENILVTSGGTVKL 161 (308)
T ss_dssp SSSEEEEEEEEECCC-CBHHHHHHTCC--TTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCTTTEEECTTSCEEE
T ss_pred CCCceeEEEEehhhh-cCHHHHHhhcc--CCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCEEE
Confidence 4789999997 59999987642 23489999999999999999999999 9999999999999999999999
Q ss_pred eeccccccccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHH
Q 035998 887 ADFGLARLILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMR 966 (1020)
Q Consensus 887 ~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~ 966 (1020)
+|||+++..... .......||+.|+|||++.+..++.++||||+||++|||++|+.||..... .+.........
T Consensus 162 ~Dfg~a~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~---~~~~~~i~~~~ 235 (308)
T 3g33_A 162 ADFGLARIYSYQ---MALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSE---ADQLGKIFDLI 235 (308)
T ss_dssp CSCSCTTTSTTC---CCSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSH---HHHHHHHHHHH
T ss_pred eeCccccccCCC---cccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCH---HHHHHHHHHHh
Confidence 999999866322 223456789999999999889999999999999999999999999975332 12222221111
Q ss_pred hhcccccccC----c-ccc--------CccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 967 QENRESEVLD----P-FIY--------DKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 967 ~~~~~~~~~d----~-~~~--------~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
.......... + ... ....++....+.+++.+||+.||++|||++|+++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 296 (308)
T 3g33_A 236 GLPPEDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQ 296 (308)
T ss_dssp CCCCTTTSCSSCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred CCCChhhccchhhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhc
Confidence 1110000000 0 000 0001122346789999999999999999999986
No 160
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=100.00 E-value=5.9e-38 Score=345.85 Aligned_cols=257 Identities=28% Similarity=0.448 Sum_probs=201.7
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeCC----CCEEEEEEecCCch-hhHHHHHHHHHHHHHcCCCccceEeeEEe-ccCceE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLPD----GRNVAIKRLSGDCG-QMEREFRAEVEALSRAQHPNLVHLQGYCM-HKNDRL 814 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~~----~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~-~~~~~~ 814 (1020)
..+|++.+.||+|+||.||+|+..+ ...||+|.+..... ...+.+.+|++++++++||||+++++++. .++..+
T Consensus 24 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 103 (298)
T 3f66_A 24 SLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPL 103 (298)
T ss_dssp GEEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCE
T ss_pred ceehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceE
Confidence 3568889999999999999998642 23589999876443 34467899999999999999999999965 456789
Q ss_pred EEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeecccccc
Q 035998 815 LIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARL 894 (1020)
Q Consensus 815 lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~ 894 (1020)
+||||+++|+|.+++... ...+++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++.
T Consensus 104 ~v~e~~~~~~L~~~l~~~---~~~~~~~~~~~i~~ql~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~ 177 (298)
T 3f66_A 104 VVLPYMKHGDLRNFIRNE---THNPTVKDLIGFGLQVAKGMKYLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARD 177 (298)
T ss_dssp EEEECCTTCBHHHHHHCT---TCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECSCGGGCC
T ss_pred EEEeCCCCCCHHHHHHhc---ccCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEECCCCCEEECccccccc
Confidence 999999999999999753 34678999999999999999999999 999999999999999999999999999987
Q ss_pred ccCCCC--cccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHc-CCCCCCCCCCCCcccHHHHHHHHHhhccc
Q 035998 895 ILSPYD--THVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLT-GKRPMDMCKPKGSRDLISWVIRMRQENRE 971 (1020)
Q Consensus 895 ~~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~ 971 (1020)
...... ........+|+.|+|||.+.+..++.++||||+|+++|||++ |.+||......+. ... ......
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~~---~~~---~~~~~~- 250 (298)
T 3f66_A 178 MYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDI---TVY---LLQGRR- 250 (298)
T ss_dssp CSCGGGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCTTTH---HHH---HHTTCC-
T ss_pred ccccchhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCHHHH---HHH---HhcCCC-
Confidence 643221 122234567789999999999999999999999999999999 5666654433221 111 111111
Q ss_pred ccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 972 SEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 972 ~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
...+ ......+.+++.+||+.||++||+++|+++.|+++
T Consensus 251 --~~~~-------~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~ 289 (298)
T 3f66_A 251 --LLQP-------EYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAI 289 (298)
T ss_dssp --CCCC-------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred --CCCC-------ccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 0011 01123588999999999999999999999999886
No 161
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=100.00 E-value=1.1e-37 Score=341.00 Aligned_cols=251 Identities=24% Similarity=0.345 Sum_probs=204.0
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc--hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC--GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIY 817 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 817 (1020)
.++|++.+.||+|+||.||+|... +++.||+|++.... ....+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~ 84 (284)
T 3kk8_A 5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF 84 (284)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEE
Confidence 468999999999999999999865 68999999986543 233467889999999999999999999999999999999
Q ss_pred EeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCC---eEEeecccccc
Q 035998 818 SFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFG---AHLADFGLARL 894 (1020)
Q Consensus 818 e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~---~kl~Dfg~~~~ 894 (1020)
||+++++|.+++... ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++. +||+|||.+..
T Consensus 85 e~~~~~~l~~~~~~~----~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~ 157 (284)
T 3kk8_A 85 DLVTGGELFEDIVAR----EFYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVKLADFGLAIE 157 (284)
T ss_dssp CCCCSCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSTTCCEEECCCTTCEE
T ss_pred ecCCCCCHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHC---CcCcCCCCHHHEEEecCCCCCcEEEeeceeeEE
Confidence 999999998888765 4689999999999999999999999 9999999999999986655 99999999987
Q ss_pred ccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccccc
Q 035998 895 ILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEV 974 (1020)
Q Consensus 895 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 974 (1020)
.... .......|++.|+|||++.+..++.++||||+|+++|+|++|+.||..... ............. .
T Consensus 158 ~~~~---~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~------~~~~~~~~~~~~~--~ 226 (284)
T 3kk8_A 158 VNDS---EAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQ------HRLYAQIKAGAYD--Y 226 (284)
T ss_dssp CCSS---CBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH------HHHHHHHHHTCCC--C
T ss_pred cccC---ccccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCch------hHHHHHHHhcccc--C
Confidence 6432 223346789999999999999999999999999999999999999964321 1111111111110 0
Q ss_pred cCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 975 LDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 975 ~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
..+ ... .....+.+++.+||+.||++|||++|+++
T Consensus 227 ~~~-~~~----~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 261 (284)
T 3kk8_A 227 PSP-EWD----TVTPEAKSLIDSMLTVNPKKRITADQALK 261 (284)
T ss_dssp CTT-TTT----TSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred Cch-hhc----ccCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 000 001 11235789999999999999999999987
No 162
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=100.00 E-value=1.8e-37 Score=348.32 Aligned_cols=248 Identities=22% Similarity=0.313 Sum_probs=202.3
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc---hhhHHHHHHHHHHHHHc-CCCccceEeeEEeccCceEE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC---GQMEREFRAEVEALSRA-QHPNLVHLQGYCMHKNDRLL 815 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l 815 (1020)
.++|++.+.||+|+||.||+|+.+ +++.||||++.... ....+.+.+|.+++..+ +||+|+++++++.+.+..|+
T Consensus 19 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~l 98 (353)
T 2i0e_A 19 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYF 98 (353)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEEE
T ss_pred hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEEE
Confidence 468999999999999999999976 47889999997542 12345678899999887 79999999999999999999
Q ss_pred EEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccc
Q 035998 816 IYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLI 895 (1020)
Q Consensus 816 v~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~ 895 (1020)
||||+++|+|.+++... ..+++..++.++.||+.||+|||++ +|+||||||+||+++.++++||+|||+++..
T Consensus 99 v~E~~~gg~L~~~l~~~----~~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~vkL~DFG~a~~~ 171 (353)
T 2i0e_A 99 VMEYVNGGDLMYHIQQV----GRFKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKEN 171 (353)
T ss_dssp EEECCCSCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCC
T ss_pred EEeCCCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEEcCCCcEEEEeCCccccc
Confidence 99999999999999865 4689999999999999999999999 9999999999999999999999999999864
Q ss_pred cCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhccccccc
Q 035998 896 LSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVL 975 (1020)
Q Consensus 896 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 975 (1020)
... ........||+.|+|||++.+..++.++||||+||++|||++|+.||..... ......+..... ..
T Consensus 172 ~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~------~~~~~~i~~~~~--~~- 240 (353)
T 2i0e_A 172 IWD--GVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDE------DELFQSIMEHNV--AY- 240 (353)
T ss_dssp CCT--TCCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSH------HHHHHHHHHCCC--CC-
T ss_pred ccC--CcccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCCH------HHHHHHHHhCCC--CC-
Confidence 322 2233456899999999999999999999999999999999999999974321 111111211110 00
Q ss_pred CccccCccCHHHHHHHHHHHhhccCCCCCCCCC-----HHHHHH
Q 035998 976 DPFIYDKQHDKEMLRVLDIACLCLSESPKVRPT-----TQQLVS 1014 (1020)
Q Consensus 976 d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs-----~~evl~ 1014 (1020)
| ......+.+++.+||+.||.+||+ ++|+++
T Consensus 241 -p-------~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~i~~ 276 (353)
T 2i0e_A 241 -P-------KSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKE 276 (353)
T ss_dssp -C-------TTSCHHHHHHHHHHTCSCTTSCTTCSTTHHHHHHT
T ss_pred -C-------CCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhc
Confidence 0 111236889999999999999995 577764
No 163
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=100.00 E-value=5.6e-38 Score=342.06 Aligned_cols=253 Identities=23% Similarity=0.324 Sum_probs=205.1
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEEEe
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIYSF 819 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 819 (1020)
.++|++.+.||+|+||.||+|... ++..||+|++........+.+.+|++++++++||||+++++++.+.+..++||||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 87 (277)
T 3f3z_A 8 NQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVMEL 87 (277)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred hhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEEec
Confidence 356899999999999999999875 5778999999766555567899999999999999999999999999999999999
Q ss_pred ccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEE---cCCCCeEEeecccccccc
Q 035998 820 MENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILL---DGNFGAHLADFGLARLIL 896 (1020)
Q Consensus 820 ~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll---~~~~~~kl~Dfg~~~~~~ 896 (1020)
+++++|.+++... ..+++..++.++.|++.||+|||++ +|+||||||+||++ +.++.+||+|||++....
T Consensus 88 ~~~~~L~~~~~~~----~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~ 160 (277)
T 3f3z_A 88 CTGGELFERVVHK----RVFRESDAARIMKDVLSAVAYCHKL---NVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFK 160 (277)
T ss_dssp CCSCBHHHHHHHH----CSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSTTCCEEECCCTTCEECC
T ss_pred cCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEecCCCCCcEEEEecccceecc
Confidence 9999999988764 4589999999999999999999999 99999999999999 788999999999998764
Q ss_pred CCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccccccC
Q 035998 897 SPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVLD 976 (1020)
Q Consensus 897 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 976 (1020)
.. .......||+.|+|||++.+. ++.++||||+|+++|||++|+.||...... . ........... ..
T Consensus 161 ~~---~~~~~~~~t~~y~aPE~~~~~-~~~~~Di~slG~~l~~l~~g~~p~~~~~~~---~---~~~~~~~~~~~---~~ 227 (277)
T 3f3z_A 161 PG---KMMRTKVGTPYYVSPQVLEGL-YGPECDEWSAGVMMYVLLCGYPPFSAPTDS---E---VMLKIREGTFT---FP 227 (277)
T ss_dssp TT---SCBCCCCSCTTTCCHHHHTTC-BCTTHHHHHHHHHHHHHHHSSCSSCCSSHH---H---HHHHHHHCCCC---CC
T ss_pred Cc---cchhccCCCCCccChHHhccc-CCchhhehhHHHHHHHHHHCCCCCCCCCHH---H---HHHHHHhCCCC---CC
Confidence 32 223445789999999988664 899999999999999999999999753221 1 11111111100 00
Q ss_pred ccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH--HHH
Q 035998 977 PFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS--WLD 1017 (1020)
Q Consensus 977 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~--~L~ 1017 (1020)
+..... ....+.+++.+|++.||++||++.++++ +++
T Consensus 228 ~~~~~~----~~~~~~~li~~~l~~dp~~R~s~~~~l~h~~~~ 266 (277)
T 3f3z_A 228 EKDWLN----VSPQAESLIRRLLTKSPKQRITSLQALEHEWFE 266 (277)
T ss_dssp HHHHTT----SCHHHHHHHHHHTCSSTTTSCCHHHHTTSHHHH
T ss_pred chhhhc----CCHHHHHHHHHHccCChhhCcCHHHHhcCHHHh
Confidence 000001 1236889999999999999999999986 444
No 164
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=100.00 E-value=2.8e-37 Score=352.77 Aligned_cols=250 Identities=26% Similarity=0.378 Sum_probs=197.0
Q ss_pred cCCCcCCeeeccCCeEEEEEEeCCCCEEEEEEecCCc--hhhHHHHHHHHHHHHHcC--CCccceEeeEEeccCceEEEE
Q 035998 742 NNFDQANIIGCGGFGLVYRATLPDGRNVAIKRLSGDC--GQMEREFRAEVEALSRAQ--HPNLVHLQGYCMHKNDRLLIY 817 (1020)
Q Consensus 742 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~--h~niv~l~~~~~~~~~~~lv~ 817 (1020)
++|++.+.||+|+||.||+|...+++.||||++.... ....+.+.+|++++++++ ||||+++++++...+..++||
T Consensus 56 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~ 135 (390)
T 2zmd_A 56 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM 135 (390)
T ss_dssp EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred CceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEEE
Confidence 4699999999999999999998889999999986543 334567899999999996 599999999999999999999
Q ss_pred EeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccC
Q 035998 818 SFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILS 897 (1020)
Q Consensus 818 e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~ 897 (1020)
| +.+++|.+++... ..+++.++..++.||+.||+|||+. +|+||||||+||+++ ++.+||+|||+++....
T Consensus 136 E-~~~~~L~~~l~~~----~~~~~~~~~~i~~qi~~aL~~lH~~---~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~ 206 (390)
T 2zmd_A 136 E-CGNIDLNSWLKKK----KSIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGMLKLIDFGIANQMQP 206 (390)
T ss_dssp E-CCSEEHHHHHHHC----SSCCHHHHHHHHHHHHHHHHHHHTT---TCCCCCCCGGGEEES-SSCEEECCCSSSCCC--
T ss_pred e-cCCCCHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHEEEE-CCeEEEEecCccccccC
Confidence 9 5688999999865 3678899999999999999999999 999999999999995 58899999999987644
Q ss_pred CCCcccccccccccCccCccccCC-----------CCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHH
Q 035998 898 PYDTHVTTDLVGTLGYIPPEYGQA-----------SVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMR 966 (1020)
Q Consensus 898 ~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~ 966 (1020)
...........||+.|+|||++.+ ..++.++|||||||++|||++|+.||..... .........
T Consensus 207 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~-----~~~~~~~~~ 281 (390)
T 2zmd_A 207 DTTSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIIN-----QISKLHAII 281 (390)
T ss_dssp -------CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCC-----HHHHHHHHH
T ss_pred CCccccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhH-----HHHHHHHHh
Confidence 332233445679999999998754 4789999999999999999999999964321 122222222
Q ss_pred hhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 967 QENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 967 ~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
........ + .. ....+.+++.+||+.||.+||+++|+++
T Consensus 282 ~~~~~~~~--~----~~---~~~~~~~li~~~L~~dP~~Rps~~ell~ 320 (390)
T 2zmd_A 282 DPNHEIEF--P----DI---PEKDLQDVLKCCLKRDPKQRISIPELLA 320 (390)
T ss_dssp CTTSCCCC--C----CC---SCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred CccccCCC--C----cc---chHHHHHHHHHHcccChhhCCCHHHHhh
Confidence 11111110 0 01 1235789999999999999999999986
No 165
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=100.00 E-value=9.1e-38 Score=346.22 Aligned_cols=244 Identities=25% Similarity=0.283 Sum_probs=192.3
Q ss_pred cCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc--hhhHHHHHHHHHHHHHc-CCCccceEeeEEeccCceEEEE
Q 035998 742 NNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC--GQMEREFRAEVEALSRA-QHPNLVHLQGYCMHKNDRLLIY 817 (1020)
Q Consensus 742 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ 817 (1020)
++|++.++||+|+||+||+|+.. +++.||||++.... .........|+..+.++ +||||+++++++.+.+..++||
T Consensus 57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv~ 136 (311)
T 3p1a_A 57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQT 136 (311)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEEE
Confidence 46999999999999999999876 79999999986543 22233455566666555 8999999999999999999999
Q ss_pred EeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccC
Q 035998 818 SFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILS 897 (1020)
Q Consensus 818 e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~ 897 (1020)
||+ +++|.+++... ...+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++....
T Consensus 137 e~~-~~~L~~~~~~~---~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~ 209 (311)
T 3p1a_A 137 ELC-GPSLQQHCEAW---GASLPEAQVWGYLRDTLLALAHLHSQ---GLVHLDVKPANIFLGPRGRCKLGDFGLLVELGT 209 (311)
T ss_dssp ECC-CCBHHHHHHHH---CSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECGGGCEEECCCTTCEECC-
T ss_pred ecc-CCCHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEECCCCCEEEccceeeeeccc
Confidence 999 66898888765 24689999999999999999999999 999999999999999999999999999987643
Q ss_pred CCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccccccCc
Q 035998 898 PYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVLDP 977 (1020)
Q Consensus 898 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 977 (1020)
. .......||+.|+|||++.+ .++.++||||+||++|||++|..||... ... ....... ..+
T Consensus 210 ~---~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~~------~~~---~~~~~~~-----~~~ 271 (311)
T 3p1a_A 210 A---GAGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGG------EGW---QQLRQGY-----LPP 271 (311)
T ss_dssp --------CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSSH------HHH---HHHTTTC-----CCH
T ss_pred C---CCCcccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCCc------cHH---HHHhccC-----CCc
Confidence 2 22344568999999998876 7899999999999999999997766421 000 1111110 111
Q ss_pred cccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 978 FIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 978 ~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
..... ....+.+++.+||+.||++|||++|+++
T Consensus 272 ~~~~~----~~~~l~~li~~~L~~dP~~Rpt~~ell~ 304 (311)
T 3p1a_A 272 EFTAG----LSSELRSVLVMMLEPDPKLRATAEALLA 304 (311)
T ss_dssp HHHTT----SCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred ccccC----CCHHHHHHHHHHcCCChhhCcCHHHHHh
Confidence 11111 1246889999999999999999999986
No 166
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=100.00 E-value=2e-37 Score=364.26 Aligned_cols=256 Identities=23% Similarity=0.321 Sum_probs=207.9
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCch---hhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCG---QMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLI 816 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 816 (1020)
.++|++.+.||+|+||.||+|+.+ +|+.||||++..... ...+.+.+|++++++++||||+++++++.+.+..|+|
T Consensus 184 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV 263 (543)
T 3c4z_A 184 EDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLV 263 (543)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEE
Confidence 367899999999999999999975 689999999965421 2245688999999999999999999999999999999
Q ss_pred EEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeecccccccc
Q 035998 817 YSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLIL 896 (1020)
Q Consensus 817 ~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~ 896 (1020)
|||++||+|.+++.........+++..++.++.||+.||+|||++ +|+||||||+||+++.+|.+||+|||+++...
T Consensus 264 mE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~---gIvHrDLKP~NILl~~~g~vkL~DFGla~~~~ 340 (543)
T 3c4z_A 264 MTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQR---NIIYRDLKPENVLLDDDGNVRISDLGLAVELK 340 (543)
T ss_dssp ECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCTTCEECC
T ss_pred EEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHc---CCcccCCChHHEEEeCCCCEEEeecceeeecc
Confidence 999999999999987654456799999999999999999999999 99999999999999999999999999998764
Q ss_pred CCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccccccC
Q 035998 897 SPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVLD 976 (1020)
Q Consensus 897 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 976 (1020)
... .......||+.|+|||++.+..++.++||||+||++|||++|+.||.......... .....+..... ..
T Consensus 341 ~~~--~~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~~~~~--~~~~~i~~~~~--~~-- 412 (543)
T 3c4z_A 341 AGQ--TKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENK--ELKQRVLEQAV--TY-- 412 (543)
T ss_dssp TTC--CCBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCCCCHH--HHHHHHHHCCC--CC--
T ss_pred CCC--cccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccchhHH--HHHHHHhhccc--CC--
Confidence 322 22334589999999999999999999999999999999999999997654322211 11111111110 00
Q ss_pred ccccCccCHHHHHHHHHHHhhccCCCCCCCCCH-----HHHHH
Q 035998 977 PFIYDKQHDKEMLRVLDIACLCLSESPKVRPTT-----QQLVS 1014 (1020)
Q Consensus 977 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~-----~evl~ 1014 (1020)
+......+.+++.+||+.||++||++ +++++
T Consensus 413 -------p~~~s~~~~~li~~lL~~dP~~R~~~~~~~a~ei~~ 448 (543)
T 3c4z_A 413 -------PDKFSPASKDFCEALLQKDPEKRLGFRDGSCDGLRT 448 (543)
T ss_dssp -------CTTSCHHHHHHHHHHSCSSGGGSCCCBTTBSHHHHT
T ss_pred -------CcccCHHHHHHHHHhccCCHhHCCCCcccCHHHHHc
Confidence 11112367899999999999999965 66654
No 167
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=3.2e-38 Score=355.84 Aligned_cols=265 Identities=24% Similarity=0.279 Sum_probs=202.8
Q ss_pred HHhccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc-----hhhHHHHHHHHHHHHHcCCCccceEeeEEeccC
Q 035998 738 LESTNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC-----GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKN 811 (1020)
Q Consensus 738 ~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-----~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~ 811 (1020)
....++|++.+.||+|+||.||+|+.. +++.||+|++.... ....+.+.+|++++++++||||+++++++.+.+
T Consensus 22 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~ 101 (345)
T 3hko_A 22 LELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDEQ 101 (345)
T ss_dssp HHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECSS
T ss_pred hhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccCC
Confidence 344678999999999999999999864 68899999986432 233467899999999999999999999999999
Q ss_pred ceEEEEEeccCCChhhhhhhcCCC------------------------------------CCCCCHHHHHHHHHHHHHHH
Q 035998 812 DRLLIYSFMENGSLDYWLHEKLDG------------------------------------PSSLDWDSRLHIAQGAARGL 855 (1020)
Q Consensus 812 ~~~lv~e~~~~g~L~~~l~~~~~~------------------------------------~~~l~~~~~~~i~~~i~~~L 855 (1020)
..++||||+++|+|.+++...... ...+++..++.++.|++.||
T Consensus 102 ~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l 181 (345)
T 3hko_A 102 YICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSAL 181 (345)
T ss_dssp EEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHH
Confidence 999999999999999998632111 11235677889999999999
Q ss_pred HHhHhcCCCCeEecCCCCCCEEEcCCC--CeEEeeccccccccCCCCc--ccccccccccCccCccccCC--CCCCchhh
Q 035998 856 AYLHQSCEPHILHRDIKSSNILLDGNF--GAHLADFGLARLILSPYDT--HVTTDLVGTLGYIPPEYGQA--SVATYKGD 929 (1020)
Q Consensus 856 ~~LH~~~~~~ivH~Dlkp~NIll~~~~--~~kl~Dfg~~~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~--~~~~~~~D 929 (1020)
+|||+. +|+||||||+||+++.++ .+||+|||+++........ .......||+.|+|||++.+ ..++.++|
T Consensus 182 ~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~D 258 (345)
T 3hko_A 182 HYLHNQ---GICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKCD 258 (345)
T ss_dssp HHHHHT---TEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCCTHHH
T ss_pred HHHHHC---CccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCCcHHH
Confidence 999999 999999999999998776 8999999999876432211 22345678999999998865 67899999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCH
Q 035998 930 VYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTT 1009 (1020)
Q Consensus 930 vwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~ 1009 (1020)
|||+|+++|||++|+.||...... + ........... ...+. . ......+.+++.+||+.||.+||++
T Consensus 259 iwslG~il~el~~g~~pf~~~~~~---~---~~~~~~~~~~~--~~~~~-~----~~~~~~~~~li~~~l~~~p~~Rps~ 325 (345)
T 3hko_A 259 AWSAGVLLHLLLMGAVPFPGVNDA---D---TISQVLNKKLC--FENPN-Y----NVLSPLARDLLSNLLNRNVDERFDA 325 (345)
T ss_dssp HHHHHHHHHHHHHSSCSSCCSSHH---H---HHHHHHHCCCC--TTSGG-G----GGSCHHHHHHHHHHSCSCTTTSCCH
T ss_pred HHHHHHHHHHHHHCCCCCCCCChH---H---HHHHHHhcccc--cCCcc-c----ccCCHHHHHHHHHHcCCChhHCCCH
Confidence 999999999999999999743321 1 11111111110 01110 0 1112368899999999999999999
Q ss_pred HHHHH--HHHh
Q 035998 1010 QQLVS--WLDS 1018 (1020)
Q Consensus 1010 ~evl~--~L~~ 1018 (1020)
.|+++ ++++
T Consensus 326 ~~~l~hp~~~~ 336 (345)
T 3hko_A 326 MRALQHPWISQ 336 (345)
T ss_dssp HHHHHSHHHHT
T ss_pred HHHhcChhhcc
Confidence 99988 5554
No 168
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=100.00 E-value=1.4e-38 Score=353.02 Aligned_cols=254 Identities=26% Similarity=0.428 Sum_probs=194.6
Q ss_pred ccCCCcCCeeeccCCeEEEEEEe-CCCCEEEEEEecCCc---hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCce---
Q 035998 741 TNNFDQANIIGCGGFGLVYRATL-PDGRNVAIKRLSGDC---GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDR--- 813 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--- 813 (1020)
.++|++.+.||+|+||.||+|+. .+++.||||++.... ......+.+|++++++++||||+++++++......
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~ 90 (311)
T 3ork_A 11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL 90 (311)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEE
T ss_pred cCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcc
Confidence 46799999999999999999986 578899999997653 23345788999999999999999999998876544
Q ss_pred -EEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeecccc
Q 035998 814 -LLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLA 892 (1020)
Q Consensus 814 -~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~ 892 (1020)
++||||+++++|.+++... ..+++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||++
T Consensus 91 ~~lv~e~~~g~~L~~~l~~~----~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~a 163 (311)
T 3ork_A 91 PYIVMEYVDGVTLRDIVHTE----GPMTPKRAIEVIADACQALNFSHQN---GIIHRDVKPANIMISATNAVKVMDFGIA 163 (311)
T ss_dssp EEEEEECCCEEEHHHHHHHH----CSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEETTSCEEECCCSCC
T ss_pred cEEEEecCCCCCHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEcCCCCEEEeeccCc
Confidence 9999999999999999765 4689999999999999999999999 9999999999999999999999999999
Q ss_pred ccccCCCCc-ccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhccc
Q 035998 893 RLILSPYDT-HVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRE 971 (1020)
Q Consensus 893 ~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~ 971 (1020)
+........ .......||+.|+|||++.+..++.++||||+|+++|||++|+.||..... .............
T Consensus 164 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~------~~~~~~~~~~~~~ 237 (311)
T 3ork_A 164 RAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSP------VSVAYQHVREDPI 237 (311)
T ss_dssp ------------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSH------HHHHHHHHHCCCC
T ss_pred ccccccccccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCh------HHHHHHHhcCCCC
Confidence 876433221 223345789999999999999999999999999999999999999964322 1111111111111
Q ss_pred ccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 972 SEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 972 ~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
. +... .......+.+++.+||+.||++||++.++++
T Consensus 238 ~----~~~~---~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~ 273 (311)
T 3ork_A 238 P----PSAR---HEGLSADLDAVVLKALAKNPENRYQTAAEMR 273 (311)
T ss_dssp C----HHHH---STTCCHHHHHHHHHHTCSSGGGSCSSHHHHH
T ss_pred C----cccc---cCCCCHHHHHHHHHHHhcCHhhChhhHHHHH
Confidence 0 0000 0112235889999999999999998776654
No 169
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=100.00 E-value=2.7e-37 Score=336.96 Aligned_cols=246 Identities=30% Similarity=0.416 Sum_probs=200.3
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc---hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC---GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLI 816 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 816 (1020)
.++|++.+.||+|+||.||+|... +++.||||++.... ....+.+.+|++++++++||||+++++++.+.+..++|
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 87 (279)
T 3fdn_A 8 LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLI 87 (279)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEEE
Confidence 467999999999999999999865 57799999986532 12346788999999999999999999999999999999
Q ss_pred EEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeecccccccc
Q 035998 817 YSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLIL 896 (1020)
Q Consensus 817 ~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~ 896 (1020)
|||+++++|.+++... ..+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++....
T Consensus 88 ~e~~~~~~l~~~l~~~----~~~~~~~~~~~~~qi~~~l~~LH~~---~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~ 160 (279)
T 3fdn_A 88 LEYAPLGTVYRELQKL----SKFDEQRTATYITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAP 160 (279)
T ss_dssp ECCCTTEEHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHHTT---TCEECCCCGGGEEECTTSCEEECSCCEESCC-
T ss_pred EecCCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHhC---CEecccCChHhEEEcCCCCEEEEeccccccCC
Confidence 9999999999998765 4589999999999999999999998 99999999999999999999999999986543
Q ss_pred CCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccccccC
Q 035998 897 SPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVLD 976 (1020)
Q Consensus 897 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 976 (1020)
. .......|++.|+|||.+.+..++.++||||+|+++|+|++|+.||..... ............ ..
T Consensus 161 ~----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~------~~~~~~~~~~~~--~~-- 226 (279)
T 3fdn_A 161 S----SRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTY------QETYKRISRVEF--TF-- 226 (279)
T ss_dssp -----------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSH------HHHHHHHHHTCC--CC--
T ss_pred c----ccccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCcH------HHHHHHHHhCCC--CC--
Confidence 2 223345789999999999999999999999999999999999999974321 111111111110 00
Q ss_pred ccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 977 PFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 977 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
+......+.+++.+||+.||++||+++|+++
T Consensus 227 -------~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~ 257 (279)
T 3fdn_A 227 -------PDFVTEGARDLISRLLKHNPSQRPMLREVLE 257 (279)
T ss_dssp -------CTTSCHHHHHHHHHHCCSSGGGSCCHHHHHH
T ss_pred -------CCcCCHHHHHHHHHHhccChhhCCCHHHHhh
Confidence 0111235789999999999999999999997
No 170
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=100.00 E-value=2.5e-37 Score=359.64 Aligned_cols=246 Identities=24% Similarity=0.391 Sum_probs=203.5
Q ss_pred cCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCch---hhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEE
Q 035998 742 NNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCG---QMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIY 817 (1020)
Q Consensus 742 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 817 (1020)
++|.+.+.||+|+||.||+|+.. +|+.||||++..... .....+.+|+++++.++||||+++++++.+.+..++||
T Consensus 16 ~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv~ 95 (476)
T 2y94_A 16 GHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVM 95 (476)
T ss_dssp TTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence 57899999999999999999875 799999999975421 23457889999999999999999999999999999999
Q ss_pred EeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccC
Q 035998 818 SFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILS 897 (1020)
Q Consensus 818 e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~ 897 (1020)
||+++|+|.+++... ..+++..++.++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+++....
T Consensus 96 E~~~gg~L~~~l~~~----~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDLkp~NIll~~~~~vkL~DFG~a~~~~~ 168 (476)
T 2y94_A 96 EYVSGGELFDYICKN----GRLDEKESRRLFQQILSGVDYCHRH---MVVHRDLKPENVLLDAHMNAKIADFGLSNMMSD 168 (476)
T ss_dssp ECCSSEEHHHHTTSS----SSCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCSGGGEEECTTCCEEECCCSSCEECCT
T ss_pred eCCCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHC---CCCcccccHHHEEEecCCCeEEEeccchhhccc
Confidence 999999999998753 4689999999999999999999999 999999999999999999999999999987643
Q ss_pred CCCcccccccccccCccCccccCCCCC-CchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccccccC
Q 035998 898 PYDTHVTTDLVGTLGYIPPEYGQASVA-TYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVLD 976 (1020)
Q Consensus 898 ~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 976 (1020)
. .......||+.|+|||++.+..+ +.++||||+||++|||++|+.||...... .. ...+..... ..
T Consensus 169 ~---~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~~---~~---~~~i~~~~~----~~ 235 (476)
T 2y94_A 169 G---EFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHVP---TL---FKKICDGIF----YT 235 (476)
T ss_dssp T---CCBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSSSH---HH---HHHHHTTCC----CC
T ss_pred c---ccccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCCHH---HH---HHHHhcCCc----CC
Confidence 2 22344679999999999888765 78999999999999999999999753321 11 111111110 00
Q ss_pred ccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 977 PFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 977 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
| ......+.+++.+||+.||++|||++|+++
T Consensus 236 p-------~~~s~~~~~Li~~~L~~dP~~Rpt~~eil~ 266 (476)
T 2y94_A 236 P-------QYLNPSVISLLKHMLQVDPMKRATIKDIRE 266 (476)
T ss_dssp C-------TTCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred C-------ccCCHHHHHHHHHHcCCCchhCcCHHHHHh
Confidence 1 011135789999999999999999999987
No 171
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=100.00 E-value=1.9e-37 Score=339.16 Aligned_cols=252 Identities=25% Similarity=0.365 Sum_probs=198.4
Q ss_pred cCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc-hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEEEe
Q 035998 742 NNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC-GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIYSF 819 (1020)
Q Consensus 742 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 819 (1020)
++|.+.+.||+|+||.||+|+.. ++..||+|++.... ....+.+.+|++++++++||||+++++++.+....++||||
T Consensus 22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~ 101 (285)
T 3is5_A 22 DLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVMET 101 (285)
T ss_dssp HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred hheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEEe
Confidence 46889999999999999999864 68899999987654 23356789999999999999999999999999999999999
Q ss_pred ccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEE---cCCCCeEEeecccccccc
Q 035998 820 MENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILL---DGNFGAHLADFGLARLIL 896 (1020)
Q Consensus 820 ~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll---~~~~~~kl~Dfg~~~~~~ 896 (1020)
+++|+|.+++.........+++..++.++.|++.||+|||+. +|+||||||+||++ +.++.+||+|||+++...
T Consensus 102 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~~ 178 (285)
T 3is5_A 102 CEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQ---HVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFK 178 (285)
T ss_dssp CSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC--
T ss_pred CCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhC---CEEECCCCHHHEEEecCCCCCCEEEEeeecceecC
Confidence 999999999876544446789999999999999999999999 99999999999999 456889999999998654
Q ss_pred CCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccccccC
Q 035998 897 SPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVLD 976 (1020)
Q Consensus 897 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 976 (1020)
.. .......|++.|+|||++. +.++.++||||+|+++|||++|+.||...... .. ............ ..
T Consensus 179 ~~---~~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~~~~~---~~---~~~~~~~~~~~~-~~ 247 (285)
T 3is5_A 179 SD---EHSTNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGTSLE---EV---QQKATYKEPNYA-VE 247 (285)
T ss_dssp -----------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHH---HH---HHHHHHCCCCCC-C-
T ss_pred Cc---ccCcCcccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCCCCHH---HH---HhhhccCCcccc-cc
Confidence 32 2234457899999999876 56899999999999999999999999753211 11 111111111000 00
Q ss_pred ccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 977 PFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 977 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
.... ...+.+++.+||+.||++|||++|+++
T Consensus 248 ---~~~~----~~~~~~li~~~L~~dP~~Rps~~e~l~ 278 (285)
T 3is5_A 248 ---CRPL----TPQAVDLLKQMLTKDPERRPSAAQVLH 278 (285)
T ss_dssp ----CCC----CHHHHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred ---cCcC----CHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 0011 235789999999999999999999986
No 172
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=3.7e-38 Score=357.40 Aligned_cols=266 Identities=23% Similarity=0.278 Sum_probs=205.9
Q ss_pred HHHHHHhccCCCcCCeeeccCCeEEEEEEe-CCCCEEEEEEecCCchhhHHHHHHHHHHHHHcC-----CCccceEeeEE
Q 035998 734 IDDILESTNNFDQANIIGCGGFGLVYRATL-PDGRNVAIKRLSGDCGQMEREFRAEVEALSRAQ-----HPNLVHLQGYC 807 (1020)
Q Consensus 734 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-----h~niv~l~~~~ 807 (1020)
+.+.....++|++.+.||+|+||.||+|+. .+++.||||++... ....+.+..|++++++++ ||||+++++++
T Consensus 27 ~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~~~~ 105 (360)
T 3llt_A 27 WKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNI-KKYTRSAKIEADILKKIQNDDINNNNIVKYHGKF 105 (360)
T ss_dssp CCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC-HHHHHHHHHHHHHHHHTCCCSTTGGGBCCEEEEE
T ss_pred eecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccc-hhhhhhhHHHHHHHHHhcccCCCCCCeeccccee
Confidence 333344567899999999999999999987 46889999999754 333556788999999996 99999999999
Q ss_pred eccCceEEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcC-------
Q 035998 808 MHKNDRLLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDG------- 880 (1020)
Q Consensus 808 ~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~------- 880 (1020)
...+..++||||+ +++|.+++.... ...+++..+..++.||+.||+|||+. +|+||||||+||+++.
T Consensus 106 ~~~~~~~lv~e~~-~~~L~~~~~~~~--~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~~~~ 179 (360)
T 3llt_A 106 MYYDHMCLIFEPL-GPSLYEIITRNN--YNGFHIEDIKLYCIEILKALNYLRKM---SLTHTDLKPENILLDDPYFEKSL 179 (360)
T ss_dssp EETTEEEEEECCC-CCBHHHHHHHTT--TCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCTTCCEEE
T ss_pred eECCeeEEEEcCC-CCCHHHHHHhcC--CCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCcccEEEccccccccc
Confidence 9999999999999 899999998652 23589999999999999999999999 9999999999999975
Q ss_pred ------------------CCCeEEeeccccccccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHc
Q 035998 881 ------------------NFGAHLADFGLARLILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLT 942 (1020)
Q Consensus 881 ------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt 942 (1020)
++.+||+|||+++..... .....||+.|+|||++.+..++.++||||+||++|||++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~ 254 (360)
T 3llt_A 180 ITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDY-----HGSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYT 254 (360)
T ss_dssp EEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSC-----CCSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHH
T ss_pred cchhcccccccccccccCCCCEEEEeccCceecCCC-----CcCccCcccccCcHHHcCCCCCCccchHHHHHHHHHHHH
Confidence 789999999999864322 234578999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCcccHHHHHHHHHhhccc-----------ccccC------ccccCccCHH---------------HHHH
Q 035998 943 GKRPMDMCKPKGSRDLISWVIRMRQENRE-----------SEVLD------PFIYDKQHDK---------------EMLR 990 (1020)
Q Consensus 943 g~~pf~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~d------~~~~~~~~~~---------------~~~~ 990 (1020)
|+.||...... +.............. ....+ .......... ....
T Consensus 255 g~~pf~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (360)
T 3llt_A 255 GSLLFRTHEHM---EHLAMMESIIQPIPKNMLYEATKTNGSKYVNKDELKLAWPENASSINSIKHVKKCLPLYKIIKHEL 331 (360)
T ss_dssp SSCSCCCSSHH---HHHHHHHHHTCCCCHHHHHHHTTSGGGGGEETTTTEECTTTTCSCHHHHHHHHTCCCHHHHCCCHH
T ss_pred CCCCCCCCcHH---HHHHHHHHhcCCCCHHHHhhhhhccCccccCcccceecCcccccchhhhhhhhhcccccccchHHH
Confidence 99999753321 222211111110000 00000 0000000000 0145
Q ss_pred HHHHHhhccCCCCCCCCCHHHHHH
Q 035998 991 VLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 991 l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
+.+++.+||+.||++|||++|+++
T Consensus 332 l~~li~~~L~~dP~~Rpta~elL~ 355 (360)
T 3llt_A 332 FCDFLYSILQIDPTLRPSPAELLK 355 (360)
T ss_dssp HHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred HHHHHHHHhcCChhhCCCHHHHhc
Confidence 779999999999999999999986
No 173
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=100.00 E-value=5.8e-37 Score=341.55 Aligned_cols=250 Identities=24% Similarity=0.330 Sum_probs=204.5
Q ss_pred cCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCch------hhHHHHHHHHHHHHHcCCCccceEeeEEeccCceE
Q 035998 742 NNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCG------QMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRL 814 (1020)
Q Consensus 742 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~------~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 814 (1020)
++|++.+.||+|+||.||+|+.. +|+.||||++..... ...+.+.+|++++++++||||+++++++.+.+..+
T Consensus 12 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 91 (321)
T 2a2a_A 12 DFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDVV 91 (321)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred ccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEE
Confidence 46899999999999999999875 689999999875432 13567899999999999999999999999999999
Q ss_pred EEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCC----CeEEeecc
Q 035998 815 LIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNF----GAHLADFG 890 (1020)
Q Consensus 815 lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~----~~kl~Dfg 890 (1020)
+||||+++++|.+++... ..+++..++.++.|++.||+|||+. +|+||||||+||+++.++ .+||+|||
T Consensus 92 lv~e~~~~~~L~~~l~~~----~~~~~~~~~~i~~qi~~aL~~lH~~---~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg 164 (321)
T 2a2a_A 92 LILELVSGGELFDFLAQK----ESLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDKNIPIPHIKLIDFG 164 (321)
T ss_dssp EEECCCCSCBHHHHHHTC----SCEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCTTSSSCCEEECCCT
T ss_pred EEEEcCCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCChHHEEEecCCCCcCCEEEccCc
Confidence 999999999999999753 4689999999999999999999999 999999999999999887 79999999
Q ss_pred ccccccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcc
Q 035998 891 LARLILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENR 970 (1020)
Q Consensus 891 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~ 970 (1020)
+++...... ......||+.|+|||++.+..++.++||||+|+++|+|++|+.||..... .. .........
T Consensus 165 ~~~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~---~~---~~~~i~~~~- 234 (321)
T 2a2a_A 165 LAHEIEDGV---EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK---QE---TLANITSVS- 234 (321)
T ss_dssp TCEECCTTC---CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSH---HH---HHHHHHTTC-
T ss_pred cceecCccc---cccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCCH---HH---HHHHHHhcc-
Confidence 998764322 22345789999999999999999999999999999999999999964321 11 111111110
Q ss_pred cccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 971 ESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 971 ~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
...++...... ...+.+++.+||+.||++|||++|+++
T Consensus 235 --~~~~~~~~~~~----~~~~~~li~~~l~~dp~~Rps~~e~l~ 272 (321)
T 2a2a_A 235 --YDFDEEFFSHT----SELAKDFIRKLLVKETRKRLTIQEALR 272 (321)
T ss_dssp --CCCCHHHHTTC----CHHHHHHHHTTSCSSTTTSCCHHHHHH
T ss_pred --cccChhhhccc----CHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 00111111111 235789999999999999999999987
No 174
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=100.00 E-value=4.7e-38 Score=351.44 Aligned_cols=260 Identities=29% Similarity=0.427 Sum_probs=204.6
Q ss_pred ccCCCcCCeeeccCCeEEEEEEe------CCCCEEEEEEecCCc-hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCce
Q 035998 741 TNNFDQANIIGCGGFGLVYRATL------PDGRNVAIKRLSGDC-GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDR 813 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 813 (1020)
.++|++.+.||+|+||.||+|++ .+++.||||++.... ......+.+|+.++++++||||+++++++.+....
T Consensus 29 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 108 (327)
T 2yfx_A 29 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR 108 (327)
T ss_dssp GGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred hhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCCc
Confidence 46799999999999999999984 257789999997543 34456789999999999999999999999999999
Q ss_pred EEEEEeccCCChhhhhhhcCC---CCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcC---CCCeEEe
Q 035998 814 LLIYSFMENGSLDYWLHEKLD---GPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDG---NFGAHLA 887 (1020)
Q Consensus 814 ~lv~e~~~~g~L~~~l~~~~~---~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~---~~~~kl~ 887 (1020)
++||||+++++|.+++..... ....+++..++.++.|++.||+|||+. +|+||||||+||+++. +..+||+
T Consensus 109 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~i~H~dlkp~NIli~~~~~~~~~kl~ 185 (327)
T 2yfx_A 109 FILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAKIG 185 (327)
T ss_dssp EEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEEEC
T ss_pred EEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhC---CeecCcCCHhHEEEecCCCcceEEEC
Confidence 999999999999999987532 224589999999999999999999999 9999999999999984 4569999
Q ss_pred eccccccccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHc-CCCCCCCCCCCCcccHHHHHHHHH
Q 035998 888 DFGLARLILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLT-GKRPMDMCKPKGSRDLISWVIRMR 966 (1020)
Q Consensus 888 Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-g~~pf~~~~~~~~~~~~~~~~~~~ 966 (1020)
|||+++...............+++.|+|||++.+..++.++||||||+++|||+| |+.||..... ... .....
T Consensus 186 Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~---~~~---~~~~~ 259 (327)
T 2yfx_A 186 DFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSN---QEV---LEFVT 259 (327)
T ss_dssp CCHHHHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH---HHH---HHHHH
T ss_pred ccccccccccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCH---HHH---HHHHh
Confidence 9999986644333333344567889999999988899999999999999999998 9999964321 111 11111
Q ss_pred hhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 967 QENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 967 ~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
..... . . +......+.+++.+||+.||.+||+++++++.|+.+
T Consensus 260 ~~~~~-~-----~----~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~ 302 (327)
T 2yfx_A 260 SGGRM-D-----P----PKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYC 302 (327)
T ss_dssp TTCCC-C-----C----CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred cCCCC-C-----C----CCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHH
Confidence 11110 0 0 111223688999999999999999999999998764
No 175
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=5e-37 Score=344.80 Aligned_cols=266 Identities=27% Similarity=0.373 Sum_probs=202.4
Q ss_pred HhccCCCcCCeeeccCCeEEEEEEeCCCCEEEEEEecCCchhhHHHHHHHHHHHHHc--CCCccceEeeEEecc----Cc
Q 035998 739 ESTNNFDQANIIGCGGFGLVYRATLPDGRNVAIKRLSGDCGQMEREFRAEVEALSRA--QHPNLVHLQGYCMHK----ND 812 (1020)
Q Consensus 739 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l--~h~niv~l~~~~~~~----~~ 812 (1020)
...++|++.+.||+|+||.||+|+.. ++.||||++.... ...+.+|.+++... +||||+++++++.+. ..
T Consensus 34 ~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~---~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~ 109 (337)
T 3mdy_A 34 TIAKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTTE---EASWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQ 109 (337)
T ss_dssp THHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGCE
T ss_pred ccccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEeccc---cchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCCc
Confidence 34568999999999999999999985 8999999986442 33445566666554 899999999999877 67
Q ss_pred eEEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcC-----CCCeEecCCCCCCEEEcCCCCeEEe
Q 035998 813 RLLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSC-----EPHILHRDIKSSNILLDGNFGAHLA 887 (1020)
Q Consensus 813 ~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~-----~~~ivH~Dlkp~NIll~~~~~~kl~ 887 (1020)
.++||||+++|+|.++++.. .+++..++.++.|++.||+|||++. .++|+||||||+||+++.++.+||+
T Consensus 110 ~~lv~e~~~~g~L~~~l~~~-----~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kl~ 184 (337)
T 3mdy_A 110 LYLITDYHENGSLYDYLKST-----TLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIA 184 (337)
T ss_dssp EEEEECCCTTCBHHHHHHHC-----CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSCEEEC
T ss_pred eEEEEeccCCCcHHHHhhcc-----CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCCCEEEE
Confidence 89999999999999999763 5899999999999999999999752 3389999999999999999999999
Q ss_pred eccccccccCCCCcc--cccccccccCccCccccCCCCCCch------hhHHHHHHHHHHHHcC----------CCCCCC
Q 035998 888 DFGLARLILSPYDTH--VTTDLVGTLGYIPPEYGQASVATYK------GDVYSFGVVLLELLTG----------KRPMDM 949 (1020)
Q Consensus 888 Dfg~~~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~------~DvwSlGvil~elltg----------~~pf~~ 949 (1020)
|||+++......... ......||+.|+|||++.+...+.+ +|||||||++|||+|| +.||..
T Consensus 185 Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p~~~ 264 (337)
T 3mdy_A 185 DLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHD 264 (337)
T ss_dssp CCTTCEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTT
T ss_pred eCCCceeeccccccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCcccccccccccHhh
Confidence 999998764332211 1224578999999999887766654 9999999999999999 666654
Q ss_pred CCCCCcccHHHHHHHHHhhcccccccCcccc-CccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 950 CKPKGSRDLISWVIRMRQENRESEVLDPFIY-DKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 950 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
...... ......... ..... .+... ..........+.+++.+||+.||++|||++|+++.|+++
T Consensus 265 ~~~~~~-~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l 329 (337)
T 3mdy_A 265 LVPSDP-SYEDMREIV-CIKKL----RPSFPNRWSSDECLRQMGKLMTECWAHNPASRLTALRVKKTLAKM 329 (337)
T ss_dssp TSCSSC-CHHHHHHHH-TTSCC----CCCCCGGGGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHH
T ss_pred hcCCCC-chhhhHHHH-hhhcc----CccccccchhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHHHHHH
Confidence 333222 111111111 11111 11111 111235667799999999999999999999999999876
No 176
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=100.00 E-value=5.2e-37 Score=339.91 Aligned_cols=258 Identities=24% Similarity=0.303 Sum_probs=198.8
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCch---hhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCG---QMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLI 816 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 816 (1020)
.++|++.+.||+|+||.||+|+.. +++.||||++..... ...+.+.+|++++++++||||+++++++...+..++|
T Consensus 33 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv 112 (309)
T 2h34_A 33 FGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYVD 112 (309)
T ss_dssp -CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred eccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEEE
Confidence 468999999999999999999875 688999999875532 2346788999999999999999999999999999999
Q ss_pred EEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeecccccccc
Q 035998 817 YSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLIL 896 (1020)
Q Consensus 817 ~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~ 896 (1020)
|||+++++|.+++... ..+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++...
T Consensus 113 ~e~~~~~~L~~~l~~~----~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~ 185 (309)
T 2h34_A 113 MRLINGVDLAAMLRRQ----GPLAPPRAVAIVRQIGSALDAAHAA---GATHRDVKPENILVSADDFAYLVDFGIASATT 185 (309)
T ss_dssp EECCCCEEHHHHHHHH----CSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECSCCC-----
T ss_pred EEecCCCCHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHC---cCCcCCCChHHEEEcCCCCEEEecCccCcccc
Confidence 9999999999999865 4689999999999999999999999 99999999999999999999999999997654
Q ss_pred CCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccccccC
Q 035998 897 SPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVLD 976 (1020)
Q Consensus 897 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 976 (1020)
... ........|++.|+|||++.+..++.++||||+|+++|||++|+.||..... . ................
T Consensus 186 ~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~----~--~~~~~~~~~~~~~~~~- 257 (309)
T 2h34_A 186 DEK-LTQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQL----S--VMGAHINQAIPRPSTV- 257 (309)
T ss_dssp ------------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCHH----H--HHHHHHHSCCCCGGGT-
T ss_pred ccc-cccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCchH----H--HHHHHhccCCCCcccc-
Confidence 321 1223345789999999999999999999999999999999999999974221 1 1111111111100000
Q ss_pred ccccCccCHHHHHHHHHHHhhccCCCCCCCC-CHHHHHHHHHhcC
Q 035998 977 PFIYDKQHDKEMLRVLDIACLCLSESPKVRP-TTQQLVSWLDSII 1020 (1020)
Q Consensus 977 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RP-s~~evl~~L~~il 1020 (1020)
.+.....+.+++.+||+.||++|| +++++++.|++++
T Consensus 258 -------~~~~~~~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l 295 (309)
T 2h34_A 258 -------RPGIPVAFDAVIARGMAKNPEDRYVTCGDLSAAAHAAL 295 (309)
T ss_dssp -------STTCCTHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHTC
T ss_pred -------CCCCCHHHHHHHHHhccCCHHHHHHhHHHHHHHHHHHH
Confidence 111123588999999999999999 9999999998764
No 177
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.1e-37 Score=343.55 Aligned_cols=256 Identities=29% Similarity=0.394 Sum_probs=201.5
Q ss_pred CCCcCCeeeccCCeEEEEEEeC-CC---CEEEEEEecCCch-hhHHHHHHHHHHHHHcCCCccceEeeEEeccCce-EEE
Q 035998 743 NFDQANIIGCGGFGLVYRATLP-DG---RNVAIKRLSGDCG-QMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDR-LLI 816 (1020)
Q Consensus 743 ~~~~~~~lg~G~~g~V~~~~~~-~~---~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-~lv 816 (1020)
.|+..++||+|+||.||+|++. ++ ..||+|++..... ...+.+.+|++++++++||||+++++++.+.+.. ++|
T Consensus 22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v 101 (298)
T 3pls_A 22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVL 101 (298)
T ss_dssp EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEE
T ss_pred EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEE
Confidence 4566789999999999999853 22 3799999976443 3456789999999999999999999999876665 999
Q ss_pred EEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeecccccccc
Q 035998 817 YSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLIL 896 (1020)
Q Consensus 817 ~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~ 896 (1020)
|||+.+++|.+++... ...+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++...
T Consensus 102 ~e~~~~~~L~~~~~~~---~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~ 175 (298)
T 3pls_A 102 LPYMCHGDLLQFIRSP---QRNPTVKDLISFGLQVARGMEYLAEQ---KFVHRDLAARNCMLDESFTVKVADFGLARDIL 175 (298)
T ss_dssp ECCCTTCBHHHHHHCT---TCCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECCTTSSCTTT
T ss_pred EecccCCCHHHHHhcc---ccCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCCcEEeCcCCCccccc
Confidence 9999999999999763 35679999999999999999999999 99999999999999999999999999998654
Q ss_pred CCC--CcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccccc
Q 035998 897 SPY--DTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEV 974 (1020)
Q Consensus 897 ~~~--~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 974 (1020)
... .........+++.|+|||...+..++.++||||+|+++|+|++|..|+..... ..+.... ........
T Consensus 176 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~--~~~~~~~---~~~~~~~~-- 248 (298)
T 3pls_A 176 DREYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHID--PFDLTHF---LAQGRRLP-- 248 (298)
T ss_dssp TGGGGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSC--GGGHHHH---HHTTCCCC--
T ss_pred CCcccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccCC--HHHHHHH---hhcCCCCC--
Confidence 321 11222345678899999999999999999999999999999996555432211 1122211 11111100
Q ss_pred cCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 975 LDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 975 ~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
.+ ......+.+++.+||+.||.+|||++++++.|+++
T Consensus 249 -~~-------~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~l~~~ 285 (298)
T 3pls_A 249 -QP-------EYCPDSLYQVMQQCWEADPAVRPTFRVLVGEVEQI 285 (298)
T ss_dssp -CC-------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred -CC-------ccchHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 00 11123588999999999999999999999999876
No 178
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.9e-37 Score=365.72 Aligned_cols=302 Identities=22% Similarity=0.173 Sum_probs=147.2
Q ss_pred ccccccccccccccccchhhhhhcccccccccccccCCCCCcccccCCCccEEEccCCcCcccCcccccCCcccceeecc
Q 035998 206 SLEHLCLGMNDLTGGIADDIFQLQKLRLLGLQDNQLSGKLSPSIADLSNLVRLDVSSNNFSGNIPDVFAGLGEFQYLVAH 285 (1020)
Q Consensus 206 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 285 (1020)
++++|+|++|++++..+..|.++++|++|+|++|++++..|.+|.++++|++|+|++|++++..+..|.++++|++|+++
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 112 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS 112 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence 33344444444443333334444444444444444443334444444444444444444443333334444444444444
Q ss_pred cccccccCCCCCcCCcccccccccccccccccccCCCCCCCcCEEEcCCCccCCCCCCCCCCCCCCCeEecCCCcccccC
Q 035998 286 SNRFTGRIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNKFNGPLPTNLPRCRKLKNINLARNNFSGQI 365 (1020)
Q Consensus 286 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 365 (1020)
+|++++..|..|.++++|+.|++++|.+++..+..|..+++|++|+|++|++++..+..+..+++|+.|+|++|++++..
T Consensus 113 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~ 192 (477)
T 2id5_A 113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR 192 (477)
T ss_dssp TSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEEC
T ss_pred CCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeC
Confidence 44444444444444444444444444444444444444444444444444444333333444444555555555444444
Q ss_pred cccccCCCCCCeeeCCCCCCcchhhHHHHHhhhcccchhhhhccccCCCCCCCccccccCceEEEecccccccccchhhh
Q 035998 366 PETYKNFESLSYLSLSNSSIYNLSSALQVLQQCRNLTTLVLTLNFRNEKLPTDPRLHFANLKVLVIASCGLRGSIPQWLR 445 (1020)
Q Consensus 366 p~~~~~l~~L~~L~l~~N~i~~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~ 445 (1020)
+..|..+++|++|++++|+ ..+.+|....
T Consensus 193 ~~~~~~l~~L~~L~l~~~~---------------------------------------------------~~~~~~~~~~ 221 (477)
T 2id5_A 193 DYSFKRLYRLKVLEISHWP---------------------------------------------------YLDTMTPNCL 221 (477)
T ss_dssp TTCSCSCTTCCEEEEECCT---------------------------------------------------TCCEECTTTT
T ss_pred hhhcccCcccceeeCCCCc---------------------------------------------------cccccCcccc
Confidence 4444444444444444443 2222333333
Q ss_pred cCCCCcEEecccccccccccccccCcCcCcEEeCCCCcccccCCCCCCCCcccccccCcCCCCCCCcccceeeccccccc
Q 035998 446 GCSKLQLVDLSWNQLSGTIPVWFGGFQDLFYLDLSNNTFTGEIPKNLTGLPSLITRNISLEEPSPDFPFFMRRNVSARGL 525 (1020)
Q Consensus 446 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~s~~~~~~~~~~~~~~~~~~~~l 525 (1020)
...+|+.|+|++|++++..+..|..+++|++|+|++|++++..+..+.++++|
T Consensus 222 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L--------------------------- 274 (477)
T 2id5_A 222 YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRL--------------------------- 274 (477)
T ss_dssp TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTC---------------------------
T ss_pred cCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccC---------------------------
Confidence 33466666666666664444566666667777777766665544444444433
Q ss_pred ccccccCCCCeeecccCccccCCCccccCCCcceEEEecCCcceeccCccccCCCcccEEEccCCcccc
Q 035998 526 QYNQIWSFPPTIDLSLNRLDGSIWPEFGNLKKLHVFDLKHNNLSGPIPSELTGMTSLETLDLSYNNLSG 594 (1020)
Q Consensus 526 ~~n~~~~~~~~l~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g 594 (1020)
+.|+|++|++++..|..|..+++|+.|+|++|+|++..+..|..+++|++|+|++|+++.
T Consensus 275 ---------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 275 ---------QEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp ---------CEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred ---------CEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 133444444444444555556666666666666665444456666666666666666664
No 179
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=100.00 E-value=2.1e-38 Score=376.98 Aligned_cols=257 Identities=27% Similarity=0.416 Sum_probs=208.7
Q ss_pred hccCCCcCCeeeccCCeEEEEEEeCCCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEEEe
Q 035998 740 STNNFDQANIIGCGGFGLVYRATLPDGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIYSF 819 (1020)
Q Consensus 740 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 819 (1020)
..++|++.+.||+|+||.||+|+++++..||||+++.... ..+++.+|++++++++||||+++++++.+ +..++||||
T Consensus 265 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~lv~e~ 342 (535)
T 2h8h_A 265 PRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEY 342 (535)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECC
T ss_pred chhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEee-ccceEeeeh
Confidence 3567889999999999999999998888899999986543 34679999999999999999999999876 678999999
Q ss_pred ccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccCCC
Q 035998 820 MENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILSPY 899 (1020)
Q Consensus 820 ~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~ 899 (1020)
+++|+|.++++... ...+++.+++.++.||+.||+|||++ +|+||||||+|||++.++.+||+|||+++.....
T Consensus 343 ~~~gsL~~~l~~~~--~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~- 416 (535)
T 2h8h_A 343 MSKGSLLDFLKGET--GKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIEDN- 416 (535)
T ss_dssp CTTEEHHHHHSHHH--HTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCTTSTTTCCCH-
T ss_pred hcCCcHHHHHhhcC--CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEEcCCCcEEEcccccceecCCC-
Confidence 99999999997531 23588999999999999999999999 9999999999999999999999999999875321
Q ss_pred CcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHc-CCCCCCCCCCCCcccHHHHHHHHHhhcccccccCcc
Q 035998 900 DTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLT-GKRPMDMCKPKGSRDLISWVIRMRQENRESEVLDPF 978 (1020)
Q Consensus 900 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 978 (1020)
.........++..|+|||++.+..++.++|||||||++|||++ |+.||...... +.. ..+.......
T Consensus 417 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~~---~~~---~~i~~~~~~~------ 484 (535)
T 2h8h_A 417 EYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNR---EVL---DQVERGYRMP------ 484 (535)
T ss_dssp HHHTTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCHH---HHH---HHHHTTCCCC------
T ss_pred ceecccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHH---HHH---HHHHcCCCCC------
Confidence 1111223456788999999988899999999999999999999 99999754321 111 1111111110
Q ss_pred ccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhcC
Q 035998 979 IYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSII 1020 (1020)
Q Consensus 979 ~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~il 1020 (1020)
.+......+.++|.+||+.||++|||++++++.|++++
T Consensus 485 ----~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~L~~~~ 522 (535)
T 2h8h_A 485 ----CPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYF 522 (535)
T ss_dssp ----CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSS
T ss_pred ----CCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHh
Confidence 01122346889999999999999999999999999863
No 180
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=100.00 E-value=1.7e-37 Score=351.02 Aligned_cols=246 Identities=24% Similarity=0.300 Sum_probs=192.4
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCch---hhHHHHHHHHHH-HHHcCCCccceEeeEEeccCceEE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCG---QMEREFRAEVEA-LSRAQHPNLVHLQGYCMHKNDRLL 815 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~-l~~l~h~niv~l~~~~~~~~~~~l 815 (1020)
.++|++.+.||+|+||.||+|+.+ +++.||||++.+... ...+.+.+|..+ ++.++||||+++++++.+.+..|+
T Consensus 37 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~l 116 (373)
T 2r5t_A 37 PSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYF 116 (373)
T ss_dssp GGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEE
T ss_pred hhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEE
Confidence 357899999999999999999875 588999999976532 223445667666 466799999999999999999999
Q ss_pred EEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccc
Q 035998 816 IYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLI 895 (1020)
Q Consensus 816 v~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~ 895 (1020)
||||+++|+|.+++... ..+++..++.++.||+.||+|||++ +|+||||||+||+++.+|++||+|||+++..
T Consensus 117 v~E~~~gg~L~~~l~~~----~~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~ikL~DFG~a~~~ 189 (373)
T 2r5t_A 117 VLDYINGGELFYHLQRE----RCFLEPRARFYAAEIASALGYLHSL---NIVYRDLKPENILLDSQGHIVLTDFGLCKEN 189 (373)
T ss_dssp EEECCCSCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCCBCGGG
T ss_pred EEeCCCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCCCEEEeeCcccccc
Confidence 99999999999999764 4688999999999999999999999 9999999999999999999999999999864
Q ss_pred cCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhccccccc
Q 035998 896 LSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVL 975 (1020)
Q Consensus 896 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 975 (1020)
... ........||+.|+|||++.+..++.++||||+||++|||++|+.||..... ......+.... . . .
T Consensus 190 ~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~------~~~~~~i~~~~-~-~-~ 258 (373)
T 2r5t_A 190 IEH--NSTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNT------AEMYDNILNKP-L-Q-L 258 (373)
T ss_dssp BCC--CCCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSBH------HHHHHHHHHSC-C-C-C
T ss_pred ccC--CCccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCH------HHHHHHHHhcc-c-C-C
Confidence 332 2233456899999999999999999999999999999999999999964321 11111111111 0 0 0
Q ss_pred CccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHH
Q 035998 976 DPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQL 1012 (1020)
Q Consensus 976 d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ev 1012 (1020)
. .. ....+.+++.+||+.||.+||++.+.
T Consensus 259 ~----~~----~~~~~~~li~~lL~~dp~~R~~~~~~ 287 (373)
T 2r5t_A 259 K----PN----ITNSARHLLEGLLQKDRTKRLGAKDD 287 (373)
T ss_dssp C----SS----SCHHHHHHHHHHTCSSGGGSTTTTTT
T ss_pred C----CC----CCHHHHHHHHHHcccCHHhCCCCCCC
Confidence 0 11 12357899999999999999998543
No 181
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=100.00 E-value=8.5e-38 Score=347.67 Aligned_cols=259 Identities=22% Similarity=0.285 Sum_probs=198.4
Q ss_pred cCCCcC-CeeeccCCeEEEEEEeC-CCCEEEEEEecCCchhhHHHHHHHHHHHHHc-CCCccceEeeEEeccCceEEEEE
Q 035998 742 NNFDQA-NIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCGQMEREFRAEVEALSRA-QHPNLVHLQGYCMHKNDRLLIYS 818 (1020)
Q Consensus 742 ~~~~~~-~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e 818 (1020)
++|++. +.||+|+||.||+|+.. +++.||||++........+.+.+|++++.++ +||||+++++++.+.+..++|||
T Consensus 12 ~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e 91 (316)
T 2ac3_A 12 DVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVFE 91 (316)
T ss_dssp TSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred eeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEEE
Confidence 567774 78999999999999854 7899999999876555567889999999985 79999999999999999999999
Q ss_pred eccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCC---eEEeeccccccc
Q 035998 819 FMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFG---AHLADFGLARLI 895 (1020)
Q Consensus 819 ~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~---~kl~Dfg~~~~~ 895 (1020)
|+++++|.+++... ..+++..+..++.|++.||+|||++ +|+||||||+||+++.++. +||+|||+++..
T Consensus 92 ~~~~~~L~~~l~~~----~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~ 164 (316)
T 2ac3_A 92 KMRGGSILSHIHKR----RHFNELEASVVVQDVASALDFLHNK---GIAHRDLKPENILCEHPNQVSPVKICDFDLGSGI 164 (316)
T ss_dssp CCTTCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESCSSSSCSEEECCTTCCC--
T ss_pred cCCCCcHHHHHhcc----CCCCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEEccCCCcCceEEEEccCcccc
Confidence 99999999999865 4689999999999999999999999 9999999999999998776 999999999765
Q ss_pred cCCCC-----cccccccccccCccCccccCC-----CCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCccc--------
Q 035998 896 LSPYD-----THVTTDLVGTLGYIPPEYGQA-----SVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRD-------- 957 (1020)
Q Consensus 896 ~~~~~-----~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~-------- 957 (1020)
..... ........||+.|+|||++.+ ..++.++||||+||++|||++|+.||..........
T Consensus 165 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~ 244 (316)
T 2ac3_A 165 KLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPA 244 (316)
T ss_dssp -----------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC----CCHH
T ss_pred ccCCccccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCcccccccccccccccchh
Confidence 32211 111223568999999998764 568899999999999999999999997654322100
Q ss_pred -HHHHHHHHHhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 958 -LISWVIRMRQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 958 -~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
.......+.... . .. ...... .....+.+++.+||+.||++|||++|+++
T Consensus 245 ~~~~~~~~i~~~~-~-~~-~~~~~~----~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 295 (316)
T 2ac3_A 245 CQNMLFESIQEGK-Y-EF-PDKDWA----HISCAAKDLISKLLVRDAKQRLSAAQVLQ 295 (316)
T ss_dssp HHHHHHHHHHHCC-C-CC-CHHHHT----TSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred HHHHHHHHHhccC-c-cc-Cchhcc----cCCHHHHHHHHHHhhCChhhCCCHHHHhc
Confidence 001111111111 0 00 000000 11236889999999999999999999987
No 182
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=100.00 E-value=4e-37 Score=335.10 Aligned_cols=252 Identities=25% Similarity=0.336 Sum_probs=204.1
Q ss_pred cCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc-hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEEEe
Q 035998 742 NNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC-GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIYSF 819 (1020)
Q Consensus 742 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 819 (1020)
++|++.+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|+++++.++||||+++++++.+.+..++||||
T Consensus 7 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 86 (276)
T 2yex_A 7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEY 86 (276)
T ss_dssp HHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred cceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEEEe
Confidence 56899999999999999999875 68999999986443 23456789999999999999999999999999999999999
Q ss_pred ccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccCCC
Q 035998 820 MENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILSPY 899 (1020)
Q Consensus 820 ~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~ 899 (1020)
+++++|.+++... ..+++..+..++.|++.||+|||++ +++||||||+||+++.++.+||+|||.+.......
T Consensus 87 ~~~~~L~~~l~~~----~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~ 159 (276)
T 2yex_A 87 CSGGELFDRIEPD----IGMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGLATVFRYNN 159 (276)
T ss_dssp CTTEEGGGGSBTT----TBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEECEETT
T ss_pred cCCCcHHHHHhhc----cCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCChHHEEEccCCCEEEeeCCCccccCCCc
Confidence 9999999888643 4689999999999999999999999 99999999999999999999999999998654332
Q ss_pred CcccccccccccCccCccccCCCCC-CchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccccccCcc
Q 035998 900 DTHVTTDLVGTLGYIPPEYGQASVA-TYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVLDPF 978 (1020)
Q Consensus 900 ~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 978 (1020)
.........|++.|+|||+..+..+ +.++||||+|+++|||++|+.||........ ... ........ ..+
T Consensus 160 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~-~~~----~~~~~~~~---~~~- 230 (276)
T 2yex_A 160 RERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQ-EYS----DWKEKKTY---LNP- 230 (276)
T ss_dssp EECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSH-HHH----HHHTTCTT---STT-
T ss_pred chhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHH-HHH----Hhhhcccc---cCc-
Confidence 2223345678999999999887665 7899999999999999999999975433211 111 11111100 000
Q ss_pred ccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 979 IYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 979 ~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
. ......+.+++.+||+.||++|||++|+++
T Consensus 231 -~----~~~~~~~~~li~~~l~~~p~~Rps~~~il~ 261 (276)
T 2yex_A 231 -W----KKIDSAPLALLHKILVENPSARITIPDIKK 261 (276)
T ss_dssp -G----GGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred -h----hhcCHHHHHHHHHHCCCCchhCCCHHHHhc
Confidence 0 111235789999999999999999999986
No 183
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=100.00 E-value=8.1e-38 Score=350.34 Aligned_cols=251 Identities=22% Similarity=0.307 Sum_probs=199.9
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCchhhHHHHHHHHHHHHHc-CCCccceEeeEEeccCceEEEEE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCGQMEREFRAEVEALSRA-QHPNLVHLQGYCMHKNDRLLIYS 818 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e 818 (1020)
.++|++.+.||+|+||.||+|..+ +++.||||++..... ...+|++++.++ +||||+++++++.+.+..++|||
T Consensus 21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~----~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E 96 (342)
T 2qr7_A 21 TDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR----DPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVTE 96 (342)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC----CCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEEC
T ss_pred cccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC----ChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEEe
Confidence 356999999999999999999875 688999999976533 234688888888 79999999999999999999999
Q ss_pred eccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCC----CCeEEeecccccc
Q 035998 819 FMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGN----FGAHLADFGLARL 894 (1020)
Q Consensus 819 ~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~----~~~kl~Dfg~~~~ 894 (1020)
|+++|+|.+++... ..+++..+..++.||+.||+|||++ +|+||||||+||++.++ +.+||+|||+++.
T Consensus 97 ~~~gg~L~~~i~~~----~~~~~~~~~~~~~qi~~al~~lH~~---givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~ 169 (342)
T 2qr7_A 97 LMKGGELLDKILRQ----KFFSEREASAVLFTITKTVEYLHAQ---GVVHRDLKPSNILYVDESGNPESIRICDFGFAKQ 169 (342)
T ss_dssp CCCSCBHHHHHHTC----TTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSCSGGGEEECCCTTCEE
T ss_pred CCCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHC---CcEeccCCHHHEEEecCCCCcCeEEEEECCCccc
Confidence 99999999988754 4689999999999999999999999 99999999999998533 3599999999987
Q ss_pred ccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccccc
Q 035998 895 ILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEV 974 (1020)
Q Consensus 895 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 974 (1020)
..... .......||+.|+|||++.+..++.++||||+||++|||++|+.||............ ..+..... .
T Consensus 170 ~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~---~~i~~~~~-~-- 241 (342)
T 2qr7_A 170 LRAEN--GLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEIL---ARIGSGKF-S-- 241 (342)
T ss_dssp CBCTT--CCBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTSCHHHHH---HHHHHCCC-C--
T ss_pred CcCCC--CceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCcCCHHHHH---HHHccCCc-c--
Confidence 64322 2234467899999999998888999999999999999999999999754332222222 22221111 0
Q ss_pred cCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 975 LDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 975 ~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
..... .......+.+++.+||+.||++||+++|+++
T Consensus 242 ~~~~~----~~~~s~~~~~li~~~L~~dP~~R~t~~~il~ 277 (342)
T 2qr7_A 242 LSGGY----WNSVSDTAKDLVSKMLHVDPHQRLTAALVLR 277 (342)
T ss_dssp CCSTT----TTTSCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred cCccc----cccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 00101 1112236789999999999999999999986
No 184
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=100.00 E-value=1.9e-37 Score=349.04 Aligned_cols=265 Identities=17% Similarity=0.220 Sum_probs=198.9
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC----CCCEEEEEEecCCchhh-----------HHHHHHHHHHHHHcCCCccceEee
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP----DGRNVAIKRLSGDCGQM-----------EREFRAEVEALSRAQHPNLVHLQG 805 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~----~~~~vavK~~~~~~~~~-----------~~~~~~E~~~l~~l~h~niv~l~~ 805 (1020)
.++|++.+.||+|+||.||+|+.. ++..||||++....... ...+.+|+..++.++||||+++++
T Consensus 36 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~ 115 (345)
T 2v62_A 36 GNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYG 115 (345)
T ss_dssp SCEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEE
T ss_pred CceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeec
Confidence 367999999999999999999875 57889999987654221 123567888899999999999999
Q ss_pred EEec----cCceEEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCC
Q 035998 806 YCMH----KNDRLLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGN 881 (1020)
Q Consensus 806 ~~~~----~~~~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~ 881 (1020)
++.. ....++||||+ +++|.+++... ..+++.+++.++.||+.||+|||++ +|+||||||+||+++.+
T Consensus 116 ~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~----~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~ 187 (345)
T 2v62_A 116 SGLTEFKGRSYRFMVMERL-GIDLQKISGQN----GTFKKSTVLQLGIRMLDVLEYIHEN---EYVHGDIKAANLLLGYK 187 (345)
T ss_dssp EEEEESSSCEEEEEEEECE-EEEHHHHCBGG----GBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEESS
T ss_pred ccccccCCCcEEEEEEecc-CCCHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCcCHHHEEEccC
Confidence 9987 67789999999 99999998765 2689999999999999999999999 99999999999999987
Q ss_pred C--CeEEeeccccccccCCCC-----cccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCC
Q 035998 882 F--GAHLADFGLARLILSPYD-----THVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKG 954 (1020)
Q Consensus 882 ~--~~kl~Dfg~~~~~~~~~~-----~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~ 954 (1020)
+ .+||+|||+++....... ........||+.|+|||++.+..++.++|||||||++|||++|+.||.......
T Consensus 188 ~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~ 267 (345)
T 2v62_A 188 NPDQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDP 267 (345)
T ss_dssp STTSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTCH
T ss_pred CCCcEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCcccccccc
Confidence 7 999999999987642211 112244678999999999999999999999999999999999999996432211
Q ss_pred cccHHHHHHHHHhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 955 SRDLISWVIRMRQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 955 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
............. ........... ......+.+++.+||+.||++||+++++++.|+++
T Consensus 268 --~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~ 326 (345)
T 2v62_A 268 --VAVQTAKTNLLDE-LPQSVLKWAPS---GSSCCEIAQFLVCAHSLAYDEKPNYQALKKILNPH 326 (345)
T ss_dssp --HHHHHHHHHHHHT-TTHHHHHHSCT---TSCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHCTT
T ss_pred --HHHHHHHHhhccc-ccHHHHhhccc---cccHHHHHHHHHHHhhcCcccCCCHHHHHHHHhcc
Confidence 1111111111111 00000000000 01223688999999999999999999999999864
No 185
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=4.3e-37 Score=352.03 Aligned_cols=201 Identities=28% Similarity=0.423 Sum_probs=162.6
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc--hhhHHHHHHHHHHHHHcC-CCccceEeeEEeccC--ceE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC--GQMEREFRAEVEALSRAQ-HPNLVHLQGYCMHKN--DRL 814 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~--~~~ 814 (1020)
.++|++.+.||+|+||.||+|... +|+.||||++.... ....+.+.+|+.+++++. ||||+++++++...+ ..|
T Consensus 8 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~~ 87 (388)
T 3oz6_A 8 LRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDVY 87 (388)
T ss_dssp HTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCEE
T ss_pred cCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEEE
Confidence 468999999999999999999864 68999999986542 334456789999999997 999999999997544 689
Q ss_pred EEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeecccccc
Q 035998 815 LIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARL 894 (1020)
Q Consensus 815 lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~ 894 (1020)
+||||++ ++|..++... .+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++.
T Consensus 88 lv~e~~~-~~L~~~~~~~-----~~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~ 158 (388)
T 3oz6_A 88 LVFDYME-TDLHAVIRAN-----ILEPVHKQYVVYQLIKVIKYLHSG---GLLHRDMKPSNILLNAECHVKVADFGLSRS 158 (388)
T ss_dssp EEEECCS-EEHHHHHHHT-----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred EEecccC-cCHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCCCHHHeEEcCCCCEEecCCccccc
Confidence 9999998 5898888753 688999999999999999999999 999999999999999999999999999987
Q ss_pred ccCCC-------------------CcccccccccccCccCccccCC-CCCCchhhHHHHHHHHHHHHcCCCCCCCC
Q 035998 895 ILSPY-------------------DTHVTTDLVGTLGYIPPEYGQA-SVATYKGDVYSFGVVLLELLTGKRPMDMC 950 (1020)
Q Consensus 895 ~~~~~-------------------~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvil~elltg~~pf~~~ 950 (1020)
..... ........+||+.|+|||++.+ ..++.++||||+||++|||++|+.||...
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~ 234 (388)
T 3oz6_A 159 FVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGS 234 (388)
T ss_dssp SSSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred ccccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCC
Confidence 53311 1122344689999999998876 67899999999999999999999999753
No 186
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=100.00 E-value=8e-37 Score=343.91 Aligned_cols=265 Identities=28% Similarity=0.348 Sum_probs=209.7
Q ss_pred HHHhccCCCcCCeeeccCCeEEEEEEeCCCCEEEEEEecCCchhhHHHHHHHHHHHHH--cCCCccceEeeEEeccC---
Q 035998 737 ILESTNNFDQANIIGCGGFGLVYRATLPDGRNVAIKRLSGDCGQMEREFRAEVEALSR--AQHPNLVHLQGYCMHKN--- 811 (1020)
Q Consensus 737 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~l~~~~~~~~--- 811 (1020)
-....++|++.+.||+|+||.||+|+. +++.||||++... ..+.+.+|++++.. ++||||+++++++....
T Consensus 37 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~ 112 (342)
T 1b6c_B 37 QRTIARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTW 112 (342)
T ss_dssp HHHHHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSC
T ss_pred cccccccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCch---hHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCcc
Confidence 344567899999999999999999998 4899999999643 34567889999988 68999999999998776
Q ss_pred -ceEEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhH--------hcCCCCeEecCCCCCCEEEcCCC
Q 035998 812 -DRLLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLH--------QSCEPHILHRDIKSSNILLDGNF 882 (1020)
Q Consensus 812 -~~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH--------~~~~~~ivH~Dlkp~NIll~~~~ 882 (1020)
..++||||+++|+|.+++... .+++..++.++.|++.||+||| +. +|+||||||+||+++.++
T Consensus 113 ~~~~lv~e~~~~g~L~~~l~~~-----~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~NIll~~~~ 184 (342)
T 1b6c_B 113 TQLWLVSDYHEHGSLFDYLNRY-----TVTVEGMIKLALSTASGLAHLHMEIVGTQGKP---AIAHRDLKSKNILVKKNG 184 (342)
T ss_dssp CCEEEEECCCTTCBHHHHHHHC-----CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBC---EEECSCCSGGGEEECTTS
T ss_pred ceeEEEEeecCCCcHHHHHhcc-----CccHHHHHHHHHHHHHHHHHHHHHHhhhcccC---CeeeCCCCHHHEEECCCC
Confidence 789999999999999999763 5899999999999999999999 77 999999999999999999
Q ss_pred CeEEeeccccccccCCCCcc--cccccccccCccCccccCCC------CCCchhhHHHHHHHHHHHHcC----------C
Q 035998 883 GAHLADFGLARLILSPYDTH--VTTDLVGTLGYIPPEYGQAS------VATYKGDVYSFGVVLLELLTG----------K 944 (1020)
Q Consensus 883 ~~kl~Dfg~~~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~------~~~~~~DvwSlGvil~elltg----------~ 944 (1020)
.+||+|||+++......... ......||+.|+|||++.+. .++.++||||||+++|||++| .
T Consensus 185 ~~kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~ 264 (342)
T 1b6c_B 185 TCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQ 264 (342)
T ss_dssp CEEECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCC
T ss_pred CEEEEECCCceeccccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcccccc
Confidence 99999999998765432211 23445789999999988765 234789999999999999999 7
Q ss_pred CCCCCCCCCCcccHHHHHHHHHhhcccccccCccccC-ccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 945 RPMDMCKPKGSRDLISWVIRMRQENRESEVLDPFIYD-KQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 945 ~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
.||........ ....+........ ..+.+.. .........+.+++.+||+.||++|||++|+++.|+++
T Consensus 265 ~p~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L~~i 334 (342)
T 1b6c_B 265 LPYYDLVPSDP-SVEEMRKVVCEQK-----LRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQL 334 (342)
T ss_dssp CTTTTTSCSSC-CHHHHHHHHTTSC-----CCCCCCGGGGTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred cCccccCcCcc-cHHHHHHHHHHHH-----hCCCCcccccchhHHHHHHHHHHHHhccChhhCCCHHHHHHHHHHH
Confidence 78865433221 1111111111111 1111111 12345667899999999999999999999999999876
No 187
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=100.00 E-value=2.3e-37 Score=360.98 Aligned_cols=258 Identities=23% Similarity=0.272 Sum_probs=193.8
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc--hhhHHHHHHHHHHHHHcCCCccceEeeEEeccC------
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC--GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKN------ 811 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------ 811 (1020)
.++|++.+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|+++++.++||||+++++++....
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 140 (464)
T 3ttj_A 61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ 140 (464)
T ss_dssp ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCC
Confidence 468999999999999999999864 68899999997642 334567889999999999999999999997553
Q ss_pred ceEEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccc
Q 035998 812 DRLLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGL 891 (1020)
Q Consensus 812 ~~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~ 891 (1020)
..++||||++++ +.+.+.. .+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+
T Consensus 141 ~~~lv~E~~~~~-l~~~~~~------~l~~~~~~~~~~qil~aL~~lH~~---~iiHrDlkp~NIll~~~~~~kl~DFG~ 210 (464)
T 3ttj_A 141 DVYLVMELMDAN-LCQVIQM------ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGL 210 (464)
T ss_dssp EEEEEEECCSEE-HHHHHTS------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCCC
T ss_pred eEEEEEeCCCCC-HHHHHhh------cCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChHhEEEeCCCCEEEEEEEe
Confidence 469999999875 5555432 378999999999999999999999 999999999999999999999999999
Q ss_pred cccccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhc--
Q 035998 892 ARLILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQEN-- 969 (1020)
Q Consensus 892 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~-- 969 (1020)
++..... .......||+.|+|||++.+..++.++||||+||++|||++|+.||.+... .+............
T Consensus 211 a~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~~---~~~~~~i~~~lg~p~~ 284 (464)
T 3ttj_A 211 ARTAGTS---FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDY---IDQWNKVIEQLGTPCP 284 (464)
T ss_dssp C-----C---CCC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHHHHHHCSCCH
T ss_pred eeecCCC---cccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCH---HHHHHHHHHhcCCCCH
Confidence 9876432 233456899999999999999999999999999999999999999975321 11111111110000
Q ss_pred ------------------ccc-----cccCccccCcc---CHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 970 ------------------RES-----EVLDPFIYDKQ---HDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 970 ------------------~~~-----~~~d~~~~~~~---~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
... ........... .......+.+++.+||+.||++|||++|+++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~ 355 (464)
T 3ttj_A 285 EFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQ 355 (464)
T ss_dssp HHHTTSCHHHHHHHTTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred HHHHHcchhhhhHhhcccccCCCChHHhCcccccccccccccccCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 000 00000000000 1112456899999999999999999999987
No 188
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=100.00 E-value=9.9e-37 Score=355.31 Aligned_cols=261 Identities=20% Similarity=0.256 Sum_probs=209.4
Q ss_pred ccCCCcCCeeeccCCeEEEEEEe-CCCCEEEEEEecCCchhhHHHHHHHHHHHHHcCC-CccceEeeEEeccCceEEEEE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATL-PDGRNVAIKRLSGDCGQMEREFRAEVEALSRAQH-PNLVHLQGYCMHKNDRLLIYS 818 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h-~niv~l~~~~~~~~~~~lv~e 818 (1020)
.++|++.++||+|+||.||+|+. .+++.||||++..... ..++.+|+++++.++| +++..+..++.+.+..++|||
T Consensus 6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme 83 (483)
T 3sv0_A 6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK--HPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMD 83 (483)
T ss_dssp TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS--SCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc--cHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEE
Confidence 46899999999999999999986 5789999998875432 2357889999999976 556666666677788899999
Q ss_pred eccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEE---cCCCCeEEeeccccccc
Q 035998 819 FMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILL---DGNFGAHLADFGLARLI 895 (1020)
Q Consensus 819 ~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll---~~~~~~kl~Dfg~~~~~ 895 (1020)
|+ +++|.+++... ...+++..++.++.||+.||+|||++ +||||||||+|||+ +.++.+||+|||+++..
T Consensus 84 ~~-g~sL~~ll~~~---~~~l~~~~~~~i~~qi~~aL~yLH~~---gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~ 156 (483)
T 3sv0_A 84 LL-GPSLEDLFNFC---SRKLSLKTVLMLADQMINRVEFVHSK---SFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKY 156 (483)
T ss_dssp CC-CCBHHHHHHHT---TTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTTCEEECCCTTCEEC
T ss_pred CC-CCCHHHHHHhh---cCCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccCcceEEEecCCCCCeEEEEeCCcceec
Confidence 99 99999999753 24689999999999999999999999 99999999999999 68899999999999887
Q ss_pred cCCCCc-----ccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcc
Q 035998 896 LSPYDT-----HVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENR 970 (1020)
Q Consensus 896 ~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~ 970 (1020)
...... .......||+.|+|||++.+..++.++|||||||++|||++|+.||.......................
T Consensus 157 ~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~~~~~~i~~~~~~~~ 236 (483)
T 3sv0_A 157 RDTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVATS 236 (483)
T ss_dssp BCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHHHHHHHHHHHHHHSC
T ss_pred cCCccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhHHHHHHHHhhcccccc
Confidence 543321 122356799999999999999999999999999999999999999987655444333333332222211
Q ss_pred cccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 971 ESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 971 ~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
..... ... ..++.+++.+||+.||++||+++++++.|+++
T Consensus 237 ~~~l~-----~~~----p~~l~~li~~cl~~dP~~RPs~~el~~~L~~l 276 (483)
T 3sv0_A 237 IEALC-----RGY----PTEFASYFHYCRSLRFDDKPDYSYLKRLFRDL 276 (483)
T ss_dssp HHHHH-----TTS----CHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHH
T ss_pred HHHHh-----cCC----cHHHHHHHHHHhcCChhhCcCHHHHHHHHHHH
Confidence 11111 111 23688999999999999999999999999876
No 189
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=3.4e-37 Score=349.95 Aligned_cols=253 Identities=16% Similarity=0.165 Sum_probs=205.2
Q ss_pred hccCCCcCCeeeccCCeEEEEEE------eCCCCEEEEEEecCCchhhHHHHHHHHHHHHHcC---CCccceEeeEEecc
Q 035998 740 STNNFDQANIIGCGGFGLVYRAT------LPDGRNVAIKRLSGDCGQMEREFRAEVEALSRAQ---HPNLVHLQGYCMHK 810 (1020)
Q Consensus 740 ~~~~~~~~~~lg~G~~g~V~~~~------~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~---h~niv~l~~~~~~~ 810 (1020)
..++|++.+.||+|+||.||+|. ..+++.||||++.... ..++.+|++++++++ |+||+++++++...
T Consensus 63 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~~ 139 (365)
T 3e7e_A 63 GSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPAN---PWEFYIGTQLMERLKPSMQHMFMKFYSAHLFQ 139 (365)
T ss_dssp SSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSCC---HHHHHHHHHHHHHSCGGGGGGBCCEEEEEECS
T ss_pred CCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCC---hhHHHHHHHHHHHhhhhhhhhhhhhheeeecC
Confidence 45679999999999999999994 4468899999997653 456788888888886 99999999999999
Q ss_pred CceEEEEEeccCCChhhhhhhcCC-CCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcC---------
Q 035998 811 NDRLLIYSFMENGSLDYWLHEKLD-GPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDG--------- 880 (1020)
Q Consensus 811 ~~~~lv~e~~~~g~L~~~l~~~~~-~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~--------- 880 (1020)
+..++||||+++|+|.+++..... ....+++..++.++.||+.||+|||++ +||||||||+|||++.
T Consensus 140 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~~---~ivHrDiKp~NIll~~~~~~~~~~~ 216 (365)
T 3e7e_A 140 NGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDC---EIIHGDIKPDNFILGNGFLEQDDED 216 (365)
T ss_dssp SCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECGGGTCC----
T ss_pred CCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhhC---CeecCCCCHHHEEecccccCccccc
Confidence 999999999999999999976432 245799999999999999999999999 9999999999999998
Q ss_pred --CCCeEEeeccccccccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccH
Q 035998 881 --NFGAHLADFGLARLILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDL 958 (1020)
Q Consensus 881 --~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~ 958 (1020)
++.+||+|||+++...............||+.|+|||++.+..++.++|||||||++|||+||+.||........
T Consensus 217 ~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~--- 293 (365)
T 3e7e_A 217 DLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGGEC--- 293 (365)
T ss_dssp --CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEETTEE---
T ss_pred cccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccCCCCce---
Confidence 899999999999765433334445567899999999999999999999999999999999999999964322110
Q ss_pred HHHHHHHHhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCC-CCHHHHHHHHHhc
Q 035998 959 ISWVIRMRQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVR-PTTQQLVSWLDSI 1019 (1020)
Q Consensus 959 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~R-Ps~~evl~~L~~i 1019 (1020)
..... ...... ...+.+++..|++.+|.+| |+++++.+.|+++
T Consensus 294 -----------~~~~~----~~~~~~---~~~~~~~~~~~l~~~p~~r~~~~~~l~~~l~~~ 337 (365)
T 3e7e_A 294 -----------KPEGL----FRRLPH---LDMWNEFFHVMLNIPDCHHLPSLDLLRQKLKKV 337 (365)
T ss_dssp -----------EECSC----CTTCSS---HHHHHHHHHHHHCCCCTTCCCCHHHHHHHHHHH
T ss_pred -----------eechh----ccccCc---HHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHH
Confidence 00000 001111 2346688999999999988 5688888877764
No 190
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-37 Score=351.20 Aligned_cols=262 Identities=19% Similarity=0.262 Sum_probs=204.2
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeCC---------CCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCccce---------
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLPD---------GRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNLVH--------- 802 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~~---------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~--------- 802 (1020)
.++|++.+.||+|+||.||+|+... ++.||||++... +.+.+|++++++++||||++
T Consensus 41 ~~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-----~~~~~E~~~l~~l~h~niv~~~~~~~~~~ 115 (352)
T 2jii_A 41 GRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-----GRLFNEQNFFQRAAKPLQVNKWKKLYSTP 115 (352)
T ss_dssp SCEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-----STHHHHHHHHHHHCCHHHHHHHHHHTTCT
T ss_pred CCeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-----chHHHHHHHHHHhcccchhhhhhhhccCC
Confidence 3679999999999999999998753 789999998754 35788999999999999987
Q ss_pred ------EeeEEec-cCceEEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCC
Q 035998 803 ------LQGYCMH-KNDRLLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSN 875 (1020)
Q Consensus 803 ------l~~~~~~-~~~~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~N 875 (1020)
+++++.. ....++||||+ +++|.+++.... ...+++..++.++.||+.||+|||++ +|+||||||+|
T Consensus 116 ~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~--~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dikp~N 189 (352)
T 2jii_A 116 LLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSP--KHVLSERSVLQVACRLLDALEFLHEN---EYVHGNVTAEN 189 (352)
T ss_dssp TCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSG--GGCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCGGG
T ss_pred ccCccchhhccccCCcEEEEEecCC-CcCHHHHHHhCC--cCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCHHH
Confidence 5677765 67789999999 999999998642 24689999999999999999999999 99999999999
Q ss_pred EEEcCCC--CeEEeeccccccccCCCCc-----ccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCC
Q 035998 876 ILLDGNF--GAHLADFGLARLILSPYDT-----HVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMD 948 (1020)
Q Consensus 876 Ill~~~~--~~kl~Dfg~~~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~ 948 (1020)
|+++.++ .+||+|||+++........ .......||+.|+|||++.+..++.++||||||+++|||++|+.||.
T Consensus 190 Il~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~ 269 (352)
T 2jii_A 190 IFVDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWT 269 (352)
T ss_dssp EEEETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTG
T ss_pred EEEcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCcc
Confidence 9999998 8999999999876432111 11234578999999999999999999999999999999999999997
Q ss_pred CCCCCCcccHHHHHHHHHhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 949 MCKPKGSRDLISWVIRMRQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 949 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
...... ............ ......++...... ....+.+++.+||+.||++||+++++++.|+++
T Consensus 270 ~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~ 334 (352)
T 2jii_A 270 NCLPNT-EDIMKQKQKFVD--KPGPFVGPCGHWIR---PSETLQKYLKVVMALTYEEKPPYAMLRNNLEAL 334 (352)
T ss_dssp GGTTCH-HHHHHHHHHHHH--SCCCEECTTSCEEC---CCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHH
T ss_pred cCCcCH-HHHHHHHHhccC--ChhhhhhhccccCC---CcHHHHHHHHHHHhCChhhCCCHHHHHHHHHHH
Confidence 543221 111111111111 11111111110001 124688999999999999999999999999876
No 191
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=9.8e-38 Score=376.34 Aligned_cols=254 Identities=22% Similarity=0.351 Sum_probs=200.1
Q ss_pred CCCcCC-eeeccCCeEEEEEEeC---CCCEEEEEEecCCc-hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEE
Q 035998 743 NFDQAN-IIGCGGFGLVYRATLP---DGRNVAIKRLSGDC-GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIY 817 (1020)
Q Consensus 743 ~~~~~~-~lg~G~~g~V~~~~~~---~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 817 (1020)
++.+.+ .||+|+||.||+|.++ ++..||||+++... ....+++.+|++++++++|||||++++++.. +..++||
T Consensus 336 ~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv~ 414 (613)
T 2ozo_A 336 NLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVM 414 (613)
T ss_dssp SEEEEEEEEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEEE
T ss_pred ceeEcCcEEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEEE
Confidence 344444 7999999999999764 45679999997653 2346789999999999999999999999976 5689999
Q ss_pred EeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccC
Q 035998 818 SFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILS 897 (1020)
Q Consensus 818 e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~ 897 (1020)
||+++|+|.+++... ...+++..+..++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+++....
T Consensus 415 E~~~~g~L~~~l~~~---~~~l~~~~~~~i~~qi~~~L~~LH~~---~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~ 488 (613)
T 2ozo_A 415 EMAGGGPLHKFLVGK---REEIPVSNVAELLHQVSMGMKYLEEK---NFVHRNLAARNVLLVNRHYAKISDFGLSKALGA 488 (613)
T ss_dssp ECCTTCBHHHHHTTC---TTTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCSTTTTCC-
T ss_pred EeCCCCcHHHHHhhc---cCCCCHHHHHHHHHHHHHHHHHHHHC---CEEcCcCCHHHEEEcCCCcEEEeeccCcccccC
Confidence 999999999998753 35689999999999999999999999 999999999999999999999999999987643
Q ss_pred CCCc-ccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHc-CCCCCCCCCCCCcccHHHHHHHHHhhccccccc
Q 035998 898 PYDT-HVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLT-GKRPMDMCKPKGSRDLISWVIRMRQENRESEVL 975 (1020)
Q Consensus 898 ~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 975 (1020)
.... .......+++.|+|||++.+..++.++|||||||++|||++ |+.||......+ .. ..+...... .
T Consensus 489 ~~~~~~~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~---~~---~~i~~~~~~-~-- 559 (613)
T 2ozo_A 489 DDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPE---VM---AFIEQGKRM-E-- 559 (613)
T ss_dssp -------------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCSHH---HH---HHHHTTCCC-C--
T ss_pred CCceeeeccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCHHH---HH---HHHHcCCCC-C--
Confidence 2211 11223445689999999998999999999999999999998 999997644321 11 111111111 0
Q ss_pred CccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 976 DPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 976 d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
.+......+.+++.+||+.||++||+++++++.|+.+
T Consensus 560 -------~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~ 596 (613)
T 2ozo_A 560 -------CPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRAC 596 (613)
T ss_dssp -------CCTTCCHHHHHHHHHTTCSSTTTSCCHHHHHHHHHHH
T ss_pred -------CCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence 1112234688999999999999999999999999875
No 192
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=100.00 E-value=7.2e-38 Score=341.58 Aligned_cols=255 Identities=24% Similarity=0.371 Sum_probs=204.3
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc--hhhHHHHHHHHHHHHHcCCCccceEeeEEec--cCceEE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC--GQMEREFRAEVEALSRAQHPNLVHLQGYCMH--KNDRLL 815 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--~~~~~l 815 (1020)
.++|++.+.||+|+||.||+|+.. +++.||+|++.... ....+.+.+|++++++++||||+++++++.+ ....++
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l 84 (279)
T 2w5a_A 5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYI 84 (279)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEE
T ss_pred hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEE
Confidence 467999999999999999999875 68999999997543 3345678999999999999999999998854 567899
Q ss_pred EEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCC-----eEecCCCCCCEEEcCCCCeEEeecc
Q 035998 816 IYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPH-----ILHRDIKSSNILLDGNFGAHLADFG 890 (1020)
Q Consensus 816 v~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~-----ivH~Dlkp~NIll~~~~~~kl~Dfg 890 (1020)
||||+++++|.+++.........+++..++.++.|++.||+|||+. + |+||||||+||+++.++.+||+|||
T Consensus 85 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg 161 (279)
T 2w5a_A 85 VMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRR---SDGGHTVLHRDLKPANVFLDGKQNVKLGDFG 161 (279)
T ss_dssp EEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHH---C------CCCCCSGGGEEECSSSCEEECCCC
T ss_pred EEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcc---cCCCCeeEEeccchhhEEEcCCCCEEEecCc
Confidence 9999999999999987544455689999999999999999999998 7 9999999999999999999999999
Q ss_pred ccccccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcc
Q 035998 891 LARLILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENR 970 (1020)
Q Consensus 891 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~ 970 (1020)
.++..... ........|++.|+|||++.+..++.++||||+|+++|+|++|+.||..... ... ...+... .
T Consensus 162 ~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~---~~~---~~~i~~~-~ 232 (279)
T 2w5a_A 162 LARILNHD--TSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQ---KEL---AGKIREG-K 232 (279)
T ss_dssp HHHHC-----CHHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSH---HHH---HHHHHHT-C
T ss_pred hheeeccc--cccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccCH---HHH---HHHHhhc-c
Confidence 99876432 1222345789999999999888999999999999999999999999975421 111 1111111 1
Q ss_pred cccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHH
Q 035998 971 ESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWL 1016 (1020)
Q Consensus 971 ~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L 1016 (1020)
.... +......+.+++.+||+.||++||+++|+++.+
T Consensus 233 ~~~~---------~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~~ 269 (279)
T 2w5a_A 233 FRRI---------PYRYSDELNEIITRMLNLKDYHRPSVEEILENP 269 (279)
T ss_dssp CCCC---------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTST
T ss_pred cccC---------CcccCHHHHHHHHHHcCCCcccCCCHHHHHhCh
Confidence 1111 011224688999999999999999999999754
No 193
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=8.2e-39 Score=353.58 Aligned_cols=261 Identities=28% Similarity=0.366 Sum_probs=189.4
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeCCCCEEEEEEecCCchhhHHHHHHHHHHHHH--cCCCccceEeeEEeccC----ceE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLPDGRNVAIKRLSGDCGQMEREFRAEVEALSR--AQHPNLVHLQGYCMHKN----DRL 814 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~l~~~~~~~~----~~~ 814 (1020)
.++|++.+.||+|+||.||+|++. ++.||||++... ....+.+|.+++.. ++||||+++++++.+.. ..+
T Consensus 2 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~ 77 (303)
T 3gxj_A 2 ARTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLW 77 (303)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-CT-TSCEEEEECC-T---THHHHHHHHHHHTSTTCCC-CBCCEEEEEEEECSSSEEEE
T ss_pred cceeeehhhccCCCCeEEEEEEEc-CcceEEEEeccc---chhhHHHHHHHHHHHhccCcceeeeeeecccCCCccceeE
Confidence 357999999999999999999874 899999998754 23567778888877 79999999999998876 679
Q ss_pred EEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhH--------hcCCCCeEecCCCCCCEEEcCCCCeEE
Q 035998 815 LIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLH--------QSCEPHILHRDIKSSNILLDGNFGAHL 886 (1020)
Q Consensus 815 lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH--------~~~~~~ivH~Dlkp~NIll~~~~~~kl 886 (1020)
+||||+++|+|.+++... .+++..++.++.|++.||+||| +. +|+||||||+||+++.++.+||
T Consensus 78 lv~e~~~~g~L~~~l~~~-----~~~~~~~~~~~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~Nil~~~~~~~kl 149 (303)
T 3gxj_A 78 LVSDYHEHGSLFDYLNRY-----TVTVEGMIKLALSTASGLAHLHMEIVGTQGKP---AIAHRDLKSKNILVKKNGTCCI 149 (303)
T ss_dssp EEEECCTTCCHHHHHHHC-----CBCC-CHHHHC-CHHHHHC-CCCCBCSTTCBC----CCCSCCCGGGC-CCTTCCC-B
T ss_pred EEEeccCCCCHHHHHhcc-----CcchHHHHHHHHHHHHHHHHHHHHHhhhccCC---CEeeCcCCHHHeEECCCCCEEE
Confidence 999999999999999764 5677889999999999999999 77 9999999999999999999999
Q ss_pred eeccccccccCCCCcc--cccccccccCccCccccCCC------CCCchhhHHHHHHHHHHHHcC----------CCCCC
Q 035998 887 ADFGLARLILSPYDTH--VTTDLVGTLGYIPPEYGQAS------VATYKGDVYSFGVVLLELLTG----------KRPMD 948 (1020)
Q Consensus 887 ~Dfg~~~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~------~~~~~~DvwSlGvil~elltg----------~~pf~ 948 (1020)
+|||+++......... ......||+.|+|||++.+. .++.++|||||||++|||++| +.||.
T Consensus 150 ~DFg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~p~~ 229 (303)
T 3gxj_A 150 ADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYY 229 (303)
T ss_dssp CCCCC-CCEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHC-CCCC-CTGGGBCBTTBC-CCCCTTT
T ss_pred eecCcceeccCCCcccccccCCCCcCccccCHhhhcCcccccccccCcchhHHHHHHHHHHHHhcCCCccccceeecccc
Confidence 9999998765432221 12334789999999998776 445789999999999999999 66665
Q ss_pred CCCCCCcc-cHHHHHHHHHhhcccccccCccccC-ccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhcC
Q 035998 949 MCKPKGSR-DLISWVIRMRQENRESEVLDPFIYD-KQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSII 1020 (1020)
Q Consensus 949 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~il 1020 (1020)
...+.... ..+ .... .... ..+.... .........+.+++.+||+.||++|||++++++.|+++.
T Consensus 230 ~~~~~~~~~~~~--~~~~-~~~~----~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~l~ 296 (303)
T 3gxj_A 230 DLVPSDPSVEEM--RKVV-CEQK----LRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLS 296 (303)
T ss_dssp TTCC-CCCCC-C--HHHH-TTSC----CCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHC-C
T ss_pred ccCCCCccHHHH--HHHH-HHhh----cCCCccccccchhhHHHHHHHHHHHhccCcccCCCHHHHHHHHHHhh
Confidence 43222111 111 0111 1111 1111111 112356678999999999999999999999999999863
No 194
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=100.00 E-value=4.5e-38 Score=351.62 Aligned_cols=256 Identities=31% Similarity=0.453 Sum_probs=202.7
Q ss_pred cCCCcCCeeeccCCeEEEEEEeC-CCCE--EEEEEecCCc-hhhHHHHHHHHHHHHHc-CCCccceEeeEEeccCceEEE
Q 035998 742 NNFDQANIIGCGGFGLVYRATLP-DGRN--VAIKRLSGDC-GQMEREFRAEVEALSRA-QHPNLVHLQGYCMHKNDRLLI 816 (1020)
Q Consensus 742 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~--vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv 816 (1020)
++|++.+.||+|+||.||+|+.. ++.. ||+|.+.... ....+.+.+|+++++++ +||||+++++++.+.+..++|
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv 104 (327)
T 1fvr_A 25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA 104 (327)
T ss_dssp GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEE
T ss_pred HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEEE
Confidence 57899999999999999999864 4554 4999887543 23345688999999999 899999999999999999999
Q ss_pred EEeccCCChhhhhhhcC------------CCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCe
Q 035998 817 YSFMENGSLDYWLHEKL------------DGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGA 884 (1020)
Q Consensus 817 ~e~~~~g~L~~~l~~~~------------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 884 (1020)
|||+++++|.+++.... .....+++..++.++.|++.||+|||++ +|+||||||+||+++.++.+
T Consensus 105 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~~~~~ 181 (327)
T 1fvr_A 105 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVGENYVA 181 (327)
T ss_dssp ECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECGGGCE
T ss_pred EecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCccceEEEcCCCeE
Confidence 99999999999997642 2235789999999999999999999999 99999999999999999999
Q ss_pred EEeeccccccccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHc-CCCCCCCCCCCCcccHHHHHH
Q 035998 885 HLADFGLARLILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLT-GKRPMDMCKPKGSRDLISWVI 963 (1020)
Q Consensus 885 kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-g~~pf~~~~~~~~~~~~~~~~ 963 (1020)
||+|||+++.... ........+++.|+|||++.+..++.++||||+|+++|||++ |+.||..... .....
T Consensus 182 kL~Dfg~~~~~~~---~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~------~~~~~ 252 (327)
T 1fvr_A 182 KIADFGLSRGQEV---YVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTC------AELYE 252 (327)
T ss_dssp EECCTTCEESSCE---ECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCH------HHHHH
T ss_pred EEcccCcCccccc---cccccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCcH------HHHHH
Confidence 9999999974321 112233456889999999988889999999999999999998 9999965321 11111
Q ss_pred HHHhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 964 RMRQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 964 ~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
........ . .+......+.+++.+||+.||.+||+++|+++.|+++
T Consensus 253 ~~~~~~~~------~----~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~ 298 (327)
T 1fvr_A 253 KLPQGYRL------E----KPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRM 298 (327)
T ss_dssp HGGGTCCC------C----CCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HhhcCCCC------C----CCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 11111100 0 0111224688999999999999999999999999876
No 195
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=100.00 E-value=4.8e-37 Score=335.97 Aligned_cols=246 Identities=27% Similarity=0.437 Sum_probs=202.4
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCccceEeeEEec----------
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNLVHLQGYCMH---------- 809 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~---------- 809 (1020)
..+|++.+.||+|+||.||+|+.. +++.||+|++.... ..+.+|++++++++||||+++++++..
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~ 85 (284)
T 2a19_B 10 GMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN----EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSK 85 (284)
T ss_dssp HHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS----GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC------
T ss_pred ccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc----HHHHHHHHHHHhCCCCCEEEEeeeEeccccCcccccc
Confidence 356899999999999999999976 78999999997653 346789999999999999999998864
Q ss_pred ------cCceEEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCC
Q 035998 810 ------KNDRLLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFG 883 (1020)
Q Consensus 810 ------~~~~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~ 883 (1020)
....++||||+++++|.+++.... ...+++..++.++.|++.||+|||++ +|+||||||+||+++.++.
T Consensus 86 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~ 160 (284)
T 2a19_B 86 NSSRSKTKCLFIQMEFCDKGTLEQWIEKRR--GEKLDKVLALELFEQITKGVDYIHSK---KLINRDLKPSNIFLVDTKQ 160 (284)
T ss_dssp ---CCEEEEEEEEECCCCSCBHHHHHHHGG--GSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTE
T ss_pred cccccCcceEEEEEeccCCCCHHHHHhhcc--CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCCHHHEEEcCCCC
Confidence 345789999999999999997642 24689999999999999999999999 9999999999999999999
Q ss_pred eEEeeccccccccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHH
Q 035998 884 AHLADFGLARLILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVI 963 (1020)
Q Consensus 884 ~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~ 963 (1020)
+||+|||+++...... ......|++.|+|||++.+..++.++||||+|+++|||++|..||... .....
T Consensus 161 ~kl~Dfg~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~--------~~~~~ 229 (284)
T 2a19_B 161 VKIGDFGLVTSLKNDG---KRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFET--------SKFFT 229 (284)
T ss_dssp EEECCCTTCEESSCCS---CCCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHH--------HHHHH
T ss_pred EEECcchhheeccccc---cccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhH--------HHHHH
Confidence 9999999998764322 223456899999999999999999999999999999999999887411 11111
Q ss_pred HHHhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 964 RMRQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 964 ~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
... ...... ..+ ..+.+++.+||+.||++||+++|+++.|+.+
T Consensus 230 ~~~-~~~~~~--------~~~----~~~~~li~~~l~~dp~~Rps~~e~l~~l~~~ 272 (284)
T 2a19_B 230 DLR-DGIISD--------IFD----KKEKTLLQKLLSKKPEDRPNTSEILRTLTVW 272 (284)
T ss_dssp HHH-TTCCCT--------TSC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred Hhh-cccccc--------cCC----HHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 111 111111 111 3578999999999999999999999998764
No 196
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=100.00 E-value=6.7e-37 Score=343.97 Aligned_cols=245 Identities=29% Similarity=0.420 Sum_probs=198.3
Q ss_pred cCCCcCCeeeccCCeEEEEEEe-CCCCEEEEEEecCCc---hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEE
Q 035998 742 NNFDQANIIGCGGFGLVYRATL-PDGRNVAIKRLSGDC---GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIY 817 (1020)
Q Consensus 742 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 817 (1020)
++|+..+.||+|+||.||+|+. .+++.||||++.... ....+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 133 (348)
T 1u5q_A 54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM 133 (348)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEEE
Confidence 4588899999999999999986 578899999997543 223457889999999999999999999999999999999
Q ss_pred EeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccC
Q 035998 818 SFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILS 897 (1020)
Q Consensus 818 e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~ 897 (1020)
||++ |++.+++... ...+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++....
T Consensus 134 e~~~-g~l~~~l~~~---~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~ 206 (348)
T 1u5q_A 134 EYCL-GSASDLLEVH---KKPLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSASIMAP 206 (348)
T ss_dssp ECCS-EEHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTEEEECCCTTCBSSSS
T ss_pred ecCC-CCHHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEECCCCCEEEeeccCceecCC
Confidence 9997 5777777543 24689999999999999999999999 999999999999999999999999999976532
Q ss_pred CCCcccccccccccCccCcccc---CCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccccc
Q 035998 898 PYDTHVTTDLVGTLGYIPPEYG---QASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEV 974 (1020)
Q Consensus 898 ~~~~~~~~~~~gt~~y~aPE~~---~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 974 (1020)
.....||+.|+|||++ ..+.++.++|||||||++|||++|+.||..... ............ ..
T Consensus 207 ------~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~------~~~~~~~~~~~~-~~- 272 (348)
T 1u5q_A 207 ------ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNA------MSALYHIAQNES-PA- 272 (348)
T ss_dssp ------BCCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH------HHHHHHHHHSCC-CC-
T ss_pred ------CCcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCh------HHHHHHHHhcCC-CC-
Confidence 2345789999999987 367889999999999999999999999964321 111122221111 11
Q ss_pred cCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 975 LDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 975 ~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
.... .....+.+++.+||+.||++|||++++++
T Consensus 273 ----~~~~---~~~~~l~~li~~~l~~dP~~Rps~~~ll~ 305 (348)
T 1u5q_A 273 ----LQSG---HWSEYFRNFVDSCLQKIPQDRPTSEVLLK 305 (348)
T ss_dssp ----CCCT---TSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred ----CCCC---CCCHHHHHHHHHHcccChhhCcCHHHHhh
Confidence 1011 11235789999999999999999999986
No 197
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=100.00 E-value=2.2e-37 Score=360.96 Aligned_cols=248 Identities=22% Similarity=0.320 Sum_probs=194.9
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc---hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC---GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLI 816 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 816 (1020)
.++|++.+.||+|+||.||+|+.. +++.||||++.... ......+.+|+++++.++||||+++++++.+.+..++|
T Consensus 147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv 226 (446)
T 4ejn_A 147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFV 226 (446)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEEE
T ss_pred hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEE
Confidence 467999999999999999999864 68999999987532 22234577899999999999999999999999999999
Q ss_pred EEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHh-cCCCCeEecCCCCCCEEEcCCCCeEEeeccccccc
Q 035998 817 YSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQ-SCEPHILHRDIKSSNILLDGNFGAHLADFGLARLI 895 (1020)
Q Consensus 817 ~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~-~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~ 895 (1020)
|||+++|+|.+++... ..+++..+..++.||+.||+|||+ . +|+||||||+||+++.++.+||+|||+++..
T Consensus 227 ~e~~~~~~L~~~l~~~----~~~~~~~~~~~~~qi~~aL~~LH~~~---giiHrDlkp~NIll~~~~~~kl~DFG~a~~~ 299 (446)
T 4ejn_A 227 MEYANGGELFFHLSRE----RVFSEDRARFYGAEIVSALDYLHSEK---NVVYRDLKLENLMLDKDGHIKITDFGLCKEG 299 (446)
T ss_dssp ECCCSSCBHHHHHHHH----SCCCHHHHHHHHHHHHHHHHHHHHHT---CCCCCCCCGGGEEECSSSCEEECCCCCCCTT
T ss_pred EeeCCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHhhcC---CEEECCCCHHHEEECCCCCEEEccCCCceec
Confidence 9999999999998765 468999999999999999999998 7 9999999999999999999999999999864
Q ss_pred cCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhccccccc
Q 035998 896 LSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVL 975 (1020)
Q Consensus 896 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 975 (1020)
... ........||+.|+|||++.+..++.++||||+||++|||++|+.||..... ... ...+..... .
T Consensus 300 ~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~---~~~---~~~i~~~~~--~-- 367 (446)
T 4ejn_A 300 IKD--GATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH---EKL---FELILMEEI--R-- 367 (446)
T ss_dssp CC-------CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH---HHH---HHHHHHCCC--C--
T ss_pred cCC--CcccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCCH---HHH---HHHHHhCCC--C--
Confidence 322 2233456899999999999999999999999999999999999999964321 111 111111110 0
Q ss_pred CccccCccCHHHHHHHHHHHhhccCCCCCCCC-----CHHHHHH
Q 035998 976 DPFIYDKQHDKEMLRVLDIACLCLSESPKVRP-----TTQQLVS 1014 (1020)
Q Consensus 976 d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RP-----s~~evl~ 1014 (1020)
-| ......+.+++.+||+.||.+|| +++|+++
T Consensus 368 ~p-------~~~~~~~~~li~~~L~~dP~~R~~~~~~t~~ell~ 404 (446)
T 4ejn_A 368 FP-------RTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQ 404 (446)
T ss_dssp CC-------TTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred CC-------ccCCHHHHHHHHHHcccCHHHhCCCCCCCHHHHHh
Confidence 00 11123578999999999999999 9999986
No 198
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=100.00 E-value=2.1e-37 Score=338.76 Aligned_cols=254 Identities=26% Similarity=0.389 Sum_probs=203.4
Q ss_pred cCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCch------hhHHHHHHHHHHHHHcCCCccceEeeEEeccCceE
Q 035998 742 NNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCG------QMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRL 814 (1020)
Q Consensus 742 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~------~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 814 (1020)
++|++.+.||+|+||.||+|+.. +++.||+|++..... ...+.+.+|++++++++||||+++++++.+....+
T Consensus 5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~ 84 (283)
T 3bhy_A 5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVV 84 (283)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeEE
Confidence 46899999999999999999876 689999999875431 13567899999999999999999999999999999
Q ss_pred EEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCC----CeEEeecc
Q 035998 815 LIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNF----GAHLADFG 890 (1020)
Q Consensus 815 lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~----~~kl~Dfg 890 (1020)
+||||+++++|.+++... ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++ .+||+|||
T Consensus 85 lv~e~~~~~~L~~~l~~~----~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg 157 (283)
T 3bhy_A 85 LILELVSGGELFDFLAEK----ESLTEDEATQFLKQILDGVHYLHSK---RIAHFDLKPENIMLLDKNVPNPRIKLIDFG 157 (283)
T ss_dssp EEEECCCSCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSSSSCCEEECCCT
T ss_pred EEEeecCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCChHHEEEecCCCCCCceEEEecc
Confidence 999999999999999764 4689999999999999999999999 999999999999998877 89999999
Q ss_pred ccccccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcc
Q 035998 891 LARLILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENR 970 (1020)
Q Consensus 891 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~ 970 (1020)
.++..... .......|++.|+|||++.+..++.++||||+|+++|+|++|+.||...... . .........
T Consensus 158 ~~~~~~~~---~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~---~---~~~~~~~~~- 227 (283)
T 3bhy_A 158 IAHKIEAG---NEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQ---E---TLTNISAVN- 227 (283)
T ss_dssp TCEECC-----------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSHH---H---HHHHHHTTC-
T ss_pred cceeccCC---CcccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcchH---H---HHHHhHhcc-
Confidence 99876432 1223456899999999999999999999999999999999999999753211 1 111111110
Q ss_pred cccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH--HHHh
Q 035998 971 ESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS--WLDS 1018 (1020)
Q Consensus 971 ~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~--~L~~ 1018 (1020)
....+..... ....+.+++.+||+.||++||+++|+++ ++++
T Consensus 228 --~~~~~~~~~~----~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~ 271 (283)
T 3bhy_A 228 --YDFDEEYFSN----TSELAKDFIRRLLVKDPKRRMTIAQSLEHSWIKA 271 (283)
T ss_dssp --CCCCHHHHTT----CCHHHHHHHHTTSCSSGGGSCCHHHHHHCHHHHH
T ss_pred --cCCcchhccc----CCHHHHHHHHHHccCCHhHCcCHHHHHhCHHHHH
Confidence 0011111111 1235789999999999999999999997 5543
No 199
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=100.00 E-value=5.9e-37 Score=342.31 Aligned_cols=264 Identities=26% Similarity=0.398 Sum_probs=207.7
Q ss_pred ccCCCcCCeeeccCCeEEEEEEe-----CCCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCccceEeeEEeccC--ce
Q 035998 741 TNNFDQANIIGCGGFGLVYRATL-----PDGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNLVHLQGYCMHKN--DR 813 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~--~~ 813 (1020)
.++|++.+.||+|+||.||+|++ .+++.||||++........+.+.+|++++++++||||+++++++...+ ..
T Consensus 40 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 119 (326)
T 2w1i_A 40 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL 119 (326)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----CC
T ss_pred HHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCce
Confidence 45689999999999999999984 368899999998766666678999999999999999999999987654 67
Q ss_pred EEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccc
Q 035998 814 LLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLAR 893 (1020)
Q Consensus 814 ~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~ 893 (1020)
++||||+++++|.+++... ...+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++
T Consensus 120 ~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dikp~NIli~~~~~~kL~Dfg~~~ 193 (326)
T 2w1i_A 120 KLIMEYLPYGSLRDYLQKH---KERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRVKIGDFGLTK 193 (326)
T ss_dssp EEEECCCTTCBHHHHHHHS---TTSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEECCCTTCE
T ss_pred EEEEECCCCCCHHHHHHhc---ccCCCHHHHHHHHHHHHHHHHHHHhC---CEeccCCCcceEEEcCCCcEEEecCcchh
Confidence 9999999999999999864 24589999999999999999999999 99999999999999999999999999998
Q ss_pred cccCCCCc-ccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCC---------CCCcccHHHHHH
Q 035998 894 LILSPYDT-HVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCK---------PKGSRDLISWVI 963 (1020)
Q Consensus 894 ~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~---------~~~~~~~~~~~~ 963 (1020)
........ .......++..|+|||.+.+..++.++||||+|+++|||+||..||.... ............
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (326)
T 2w1i_A 194 VLPQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLI 273 (326)
T ss_dssp ECCSSCSEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHHHHHHHHCTTCCTHHHHHHHH
T ss_pred hccccccccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHHHHHHhhccccchhhhHHHHH
Confidence 76443221 11223456778999999988889999999999999999999999985321 000000000111
Q ss_pred HHHhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 964 RMRQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 964 ~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
......... ..+......+.+++.+||+.||++||+++|+++.|+++
T Consensus 274 ~~~~~~~~~---------~~~~~~~~~l~~li~~cl~~dP~~Rps~~el~~~L~~l 320 (326)
T 2w1i_A 274 ELLKNNGRL---------PRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQI 320 (326)
T ss_dssp HHHHTTCCC---------CCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHH
T ss_pred HHhhcCCCC---------CCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 111111000 01112234688999999999999999999999999875
No 200
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=100.00 E-value=2.1e-37 Score=342.38 Aligned_cols=250 Identities=23% Similarity=0.376 Sum_probs=202.0
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEEEe
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIYSF 819 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 819 (1020)
.++|++.+.||+|+||.||+|+.. +|+.||+|++........+.+.+|++++++++||||+++++++.+.+..++||||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 87 (304)
T 2jam_A 8 RKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQL 87 (304)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred hccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEEEc
Confidence 357899999999999999999875 7899999999866544456788999999999999999999999999999999999
Q ss_pred ccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEE---cCCCCeEEeecccccccc
Q 035998 820 MENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILL---DGNFGAHLADFGLARLIL 896 (1020)
Q Consensus 820 ~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll---~~~~~~kl~Dfg~~~~~~ 896 (1020)
+++++|.+++... ..+++..+..++.|++.||+|||+. +|+||||||+||++ +.++.+||+|||+++...
T Consensus 88 ~~~~~L~~~l~~~----~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~ 160 (304)
T 2jam_A 88 VSGGELFDRILER----GVYTEKDASLVIQQVLSAVKYLHEN---GIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQ 160 (304)
T ss_dssp CCSCBHHHHHHHH----SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCC
T ss_pred CCCccHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEecCCCCCCEEEccCCcceecC
Confidence 9999999998764 4689999999999999999999999 99999999999999 788999999999987542
Q ss_pred CCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccccccC
Q 035998 897 SPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVLD 976 (1020)
Q Consensus 897 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 976 (1020)
. .......|++.|+|||++.+..++.++||||+|+++|||++|+.||..... ... ...+..... . ..
T Consensus 161 ~----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~---~~~---~~~i~~~~~--~-~~ 227 (304)
T 2jam_A 161 N----GIMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETE---SKL---FEKIKEGYY--E-FE 227 (304)
T ss_dssp C----BTTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSCH---HHH---HHHHHHCCC--C-CC
T ss_pred C----CccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCH---HHH---HHHHHcCCC--C-CC
Confidence 2 222345689999999999999999999999999999999999999964321 111 111111111 0 00
Q ss_pred ccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 977 PFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 977 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
+... ......+.+++.+||+.||++||+++|+++
T Consensus 228 ~~~~----~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 261 (304)
T 2jam_A 228 SPFW----DDISESAKDFICHLLEKDPNERYTCEKALS 261 (304)
T ss_dssp TTTT----TTSCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred cccc----ccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 0011 112246889999999999999999999987
No 201
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=100.00 E-value=5.5e-38 Score=342.31 Aligned_cols=250 Identities=26% Similarity=0.406 Sum_probs=197.6
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeCCCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCccceEeeEEecc-CceEEEEEe
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLPDGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNLVHLQGYCMHK-NDRLLIYSF 819 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-~~~~lv~e~ 819 (1020)
.++|++.+.||+|+||.||+|+.+ |+.||||++.... ..+.+.+|++++++++||||+++++++.+. +..++||||
T Consensus 20 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~ 96 (278)
T 1byg_A 20 MKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEY 96 (278)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEET-TEEEEEEECCCCC----HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECC
T ss_pred hhhceEEeEEecCCCceEEEEEEc-CCEEEEEEecchh--HHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEEec
Confidence 467899999999999999999884 8899999997653 346789999999999999999999997654 478999999
Q ss_pred ccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccCCC
Q 035998 820 MENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILSPY 899 (1020)
Q Consensus 820 ~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~ 899 (1020)
+++++|.+++.... ...+++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++.....
T Consensus 97 ~~~~~L~~~l~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~- 170 (278)
T 1byg_A 97 MAKGSLVDYLRSRG--RSVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST- 170 (278)
T ss_dssp CTTEEHHHHHHHHH--HHHCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCEEECCCCC--------
T ss_pred CCCCCHHHHHHhcc--cccCCHHHHHHHHHHHHHHHHHHHhC---CccccCCCcceEEEeCCCcEEEeecccccccccc-
Confidence 99999999997641 12378899999999999999999999 9999999999999999999999999999765322
Q ss_pred CcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHc-CCCCCCCCCCCCcccHHHHHHHHHhhcccccccCcc
Q 035998 900 DTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLT-GKRPMDMCKPKGSRDLISWVIRMRQENRESEVLDPF 978 (1020)
Q Consensus 900 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 978 (1020)
.....+++.|+|||.+.+..++.++||||+|+++|||++ |+.||...... +... ....... +.
T Consensus 171 ----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~---~~~~---~~~~~~~------~~ 234 (278)
T 1byg_A 171 ----QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLK---DVVP---RVEKGYK------MD 234 (278)
T ss_dssp ---------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGG---GHHH---HHTTTCC------CC
T ss_pred ----ccCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCHH---HHHH---HHhcCCC------CC
Confidence 123457889999999988899999999999999999998 99999754322 1111 1111100 00
Q ss_pred ccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 979 IYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 979 ~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
. +......+.+++.+||+.||++||+++|+++.|+++
T Consensus 235 ~----~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~i 271 (278)
T 1byg_A 235 A----PDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHI 271 (278)
T ss_dssp C----CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred C----cccCCHHHHHHHHHHhcCChhhCCCHHHHHHHHHHH
Confidence 1 111224688999999999999999999999999875
No 202
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=100.00 E-value=4.9e-38 Score=350.50 Aligned_cols=261 Identities=21% Similarity=0.312 Sum_probs=195.1
Q ss_pred cCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCchhh-HHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEEEe
Q 035998 742 NNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCGQM-EREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIYSF 819 (1020)
Q Consensus 742 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~-~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 819 (1020)
++|++.+.||+|+||.||+|+.. +++.||||++....... ...+.+|++++++++||||+++++++.+.+..++||||
T Consensus 2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 81 (324)
T 3mtl_A 2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEY 81 (324)
T ss_dssp CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEecc
Confidence 57899999999999999999875 78999999987543221 12355799999999999999999999999999999999
Q ss_pred ccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccCCC
Q 035998 820 MENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILSPY 899 (1020)
Q Consensus 820 ~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~ 899 (1020)
+++ +|.+++... ...+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++....+
T Consensus 82 ~~~-~l~~~~~~~---~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~- 153 (324)
T 3mtl_A 82 LDK-DLKQYLDDC---GNIINMHNVKLFLFQLLRGLAYCHRQ---KVLHRDLKPQNLLINERGELKLADFGLARAKSIP- 153 (324)
T ss_dssp CSE-EHHHHHHHT---TTCCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCCGGGEEECTTCCEEECSSSEEECC----
T ss_pred ccc-CHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCcCHHHEEECCCCCEEEccCcccccccCC-
Confidence 984 888888764 34689999999999999999999999 9999999999999999999999999999865332
Q ss_pred CcccccccccccCccCccccCC-CCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcc---ccccc
Q 035998 900 DTHVTTDLVGTLGYIPPEYGQA-SVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENR---ESEVL 975 (1020)
Q Consensus 900 ~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 975 (1020)
........||+.|+|||++.+ ..++.++||||+||++|||++|+.||..... .+............. .....
T Consensus 154 -~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~---~~~~~~i~~~~~~~~~~~~~~~~ 229 (324)
T 3mtl_A 154 -TKTYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTV---EEQLHFIFRILGTPTEETWPGIL 229 (324)
T ss_dssp ----------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH---HHHHHHHHHHHCCCCTTTSTTGG
T ss_pred -ccccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH---HHHHHHHHHHhCCCChHhchhhh
Confidence 122334578999999998876 6789999999999999999999999975432 222222222211111 00000
Q ss_pred Cc---------cccC----ccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 976 DP---------FIYD----KQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 976 d~---------~~~~----~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
.. .... ...+.....+.+++.+||+.||++|||++|+++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 281 (324)
T 3mtl_A 230 SNEEFKTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMK 281 (324)
T ss_dssp GCHHHHHTCCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred cchhhcccccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhc
Confidence 00 0000 001112245789999999999999999999987
No 203
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=100.00 E-value=3.1e-37 Score=336.40 Aligned_cols=249 Identities=28% Similarity=0.453 Sum_probs=183.2
Q ss_pred ccCCCcCCeeeccCCeEEEEEEe-CCCCEEEEEEecCCch---hhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATL-PDGRNVAIKRLSGDCG---QMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLI 816 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 816 (1020)
.++|++.+.||+|+||.||+|+. .+++.||||++..... ...+.+.+|++++++++||||+++++++.+.+..++|
T Consensus 10 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 89 (278)
T 3cok_A 10 IEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLV 89 (278)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEE
T ss_pred cccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEE
Confidence 35789999999999999999986 4789999999864321 2236788999999999999999999999999999999
Q ss_pred EEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeecccccccc
Q 035998 817 YSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLIL 896 (1020)
Q Consensus 817 ~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~ 896 (1020)
|||+++++|.+++... ...+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++....
T Consensus 90 ~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~ 163 (278)
T 3cok_A 90 LEMCHNGEMNRYLKNR---VKPFSENEARHFMHQIITGMLYLHSH---GILHRDLTLSNLLLTRNMNIKIADFGLATQLK 163 (278)
T ss_dssp EECCTTEEHHHHHHTC---SSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSSCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred EecCCCCcHHHHHhhc---cCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEEEeecceeecc
Confidence 9999999999998754 34689999999999999999999999 99999999999999999999999999998764
Q ss_pred CCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccccccC
Q 035998 897 SPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVLD 976 (1020)
Q Consensus 897 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 976 (1020)
.+. .......|++.|+|||.+.+..++.++||||+|+++|||++|+.||.......... . ......
T Consensus 164 ~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~------~----~~~~~~-- 229 (278)
T 3cok_A 164 MPH--EKHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNTLN------K----VVLADY-- 229 (278)
T ss_dssp ------------------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC---------------CCSSCC--
T ss_pred CCC--CcceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHHHHHH------H----Hhhccc--
Confidence 322 12234578999999999999999999999999999999999999997543321110 0 000000
Q ss_pred ccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 977 PFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 977 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
.. +......+.+++.+||+.||++||+++++++
T Consensus 230 -~~----~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 262 (278)
T 3cok_A 230 -EM----PSFLSIEAKDLIHQLLRRNPADRLSLSSVLD 262 (278)
T ss_dssp -CC----CTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred -CC----ccccCHHHHHHHHHHcccCHhhCCCHHHHhc
Confidence 00 1112235789999999999999999999986
No 204
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=100.00 E-value=2.7e-37 Score=346.86 Aligned_cols=268 Identities=24% Similarity=0.384 Sum_probs=197.2
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeCCCCEEEEEEecCCchhhHHHHHHHHHH--HHHcCCCccceEeeEEec-----cCce
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLPDGRNVAIKRLSGDCGQMEREFRAEVEA--LSRAQHPNLVHLQGYCMH-----KNDR 813 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~--l~~l~h~niv~l~~~~~~-----~~~~ 813 (1020)
.++|++.+.||+|+||.||+|+. +++.||||++.... ...+..|.++ +..++||||+++++++.. ....
T Consensus 12 ~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~---~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~ 87 (336)
T 3g2f_A 12 LDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFAN---RQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEY 87 (336)
T ss_dssp TTSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEE
T ss_pred hHHhheeeecccCCCeEEEEEEE-CCeEEEEEEeeccc---hhhHHHHHHHHHHHhccCcchhhheecccccccCCCceE
Confidence 46799999999999999999987 68999999997543 2334444444 445799999999986543 2246
Q ss_pred EEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcC------CCCeEecCCCCCCEEEcCCCCeEEe
Q 035998 814 LLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSC------EPHILHRDIKSSNILLDGNFGAHLA 887 (1020)
Q Consensus 814 ~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~------~~~ivH~Dlkp~NIll~~~~~~kl~ 887 (1020)
++||||+++|+|.+++... ..++..++.++.|++.||+|||+.. .++|+||||||+||+++.++.+||+
T Consensus 88 ~lv~e~~~~g~L~~~l~~~-----~~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kL~ 162 (336)
T 3g2f_A 88 LLVMEYYPNGSLXKYLSLH-----TSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVIS 162 (336)
T ss_dssp EEEECCCTTCBHHHHHHHC-----CBCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECTTSCEEEC
T ss_pred EEEEecCCCCcHHHHHhhc-----ccchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEEcCCCcEEEe
Confidence 8999999999999999764 3488999999999999999999763 2389999999999999999999999
Q ss_pred eccccccccCCCC------cccccccccccCccCccccCC-------CCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCC
Q 035998 888 DFGLARLILSPYD------THVTTDLVGTLGYIPPEYGQA-------SVATYKGDVYSFGVVLLELLTGKRPMDMCKPKG 954 (1020)
Q Consensus 888 Dfg~~~~~~~~~~------~~~~~~~~gt~~y~aPE~~~~-------~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~ 954 (1020)
|||+++....... ........||+.|+|||++.+ ..++.++|||||||++|||++|..||.......
T Consensus 163 DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~ 242 (336)
T 3g2f_A 163 DFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVP 242 (336)
T ss_dssp CCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCC
T ss_pred eccceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccchh
Confidence 9999987643211 122234579999999999877 456789999999999999999977764332211
Q ss_pred c-ccH-----------HHHHHHHHhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhcC
Q 035998 955 S-RDL-----------ISWVIRMRQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSII 1020 (1020)
Q Consensus 955 ~-~~~-----------~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~il 1020 (1020)
. ... .................+. ..........+.+++.+||+.||++|||++|+++.|++++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~ll 317 (336)
T 3g2f_A 243 EYQMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEA---WKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMAELM 317 (336)
T ss_dssp CCCCTTHHHHCSSCCHHHHHHHHTTSCCCCCCCTT---CCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHHHhhhcccCCCchHHHHHhhhcccccCCCCCcc---cccccchHHHHHHHHHHHhcCChhhCcchHHHHHHHHHHH
Confidence 1 111 0111111111111111110 1112345567999999999999999999999999999863
No 205
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=100.00 E-value=1.5e-36 Score=333.92 Aligned_cols=248 Identities=21% Similarity=0.348 Sum_probs=204.5
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc---hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC---GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLI 816 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 816 (1020)
.++|++.+.||+|+||.||+|+.. +++.||+|++.... ....+.+.+|++++++++||||+++++++.+.+..++|
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv 93 (294)
T 2rku_A 14 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV 93 (294)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEE
Confidence 467899999999999999999875 57899999986542 23456788999999999999999999999999999999
Q ss_pred EEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeecccccccc
Q 035998 817 YSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLIL 896 (1020)
Q Consensus 817 ~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~ 896 (1020)
|||+++++|.+++... ..+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||.++...
T Consensus 94 ~e~~~~~~L~~~~~~~----~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~ 166 (294)
T 2rku_A 94 LELCRRRSLLELHKRR----KALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEVKIGDFGLATKVE 166 (294)
T ss_dssp EECCTTCBHHHHHHHH----CSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred EecCCCCCHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEcCCCCEEEEeccCceecc
Confidence 9999999999988764 4689999999999999999999999 99999999999999999999999999998764
Q ss_pred CCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccccccC
Q 035998 897 SPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVLD 976 (1020)
Q Consensus 897 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 976 (1020)
... .......|++.|+|||++.+..++.++||||+|+++|+|++|+.||...... ........... . .
T Consensus 167 ~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~------~~~~~~~~~~~--~--~ 234 (294)
T 2rku_A 167 YDG--ERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLK------ETYLRIKKNEY--S--I 234 (294)
T ss_dssp STT--CCBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHH------HHHHHHHTTCC--C--C
T ss_pred cCc--cccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH------HHHHHHhhccC--C--C
Confidence 322 2233457899999999999999999999999999999999999999743211 11111111110 0 0
Q ss_pred ccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 977 PFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 977 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
+ . .....+.+++.+||+.||++||+++|+++
T Consensus 235 ~---~----~~~~~~~~li~~~l~~~p~~Rps~~~ll~ 265 (294)
T 2rku_A 235 P---K----HINPVAASLIQKMLQTDPTARPTINELLN 265 (294)
T ss_dssp C---T----TSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred c---c----ccCHHHHHHHHHHcccChhhCcCHHHHhh
Confidence 0 1 11235789999999999999999999987
No 206
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=100.00 E-value=4.7e-37 Score=348.25 Aligned_cols=199 Identities=25% Similarity=0.462 Sum_probs=175.9
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc-hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEEE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC-GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIYS 818 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 818 (1020)
.++|++.+.||+|+||.||+|+.. +++.||+|++.... ....+.+.+|++++++++||||+++++++.+.+..++|||
T Consensus 32 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 111 (360)
T 3eqc_A 32 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME 111 (360)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred cccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEE
Confidence 357999999999999999999875 68999999997653 3445678999999999999999999999999999999999
Q ss_pred eccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHh-cCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccC
Q 035998 819 FMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQ-SCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILS 897 (1020)
Q Consensus 819 ~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~-~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~ 897 (1020)
|+++++|.+++... ..+++..+..++.|++.||+|||+ + +|+||||||+||+++.++.+||+|||+++....
T Consensus 112 ~~~~~~L~~~l~~~----~~~~~~~~~~i~~~i~~~l~~lh~~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~ 184 (360)
T 3eqc_A 112 HMDGGSLDQVLKKA----GRIPEQILGKVSIAVIKGLTYLREKH---KIMHRDVKPSNILVNSRGEIKLCDFGVSGQLID 184 (360)
T ss_dssp CCTTCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHHHHH---CCCCSCCSGGGEEECTTCCEEECCCCCCHHHHH
T ss_pred CCCCCCHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHhC---CEEcCCccHHHEEECCCCCEEEEECCCCccccc
Confidence 99999999999865 468999999999999999999998 5 799999999999999999999999999976532
Q ss_pred CCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCC
Q 035998 898 PYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMC 950 (1020)
Q Consensus 898 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~ 950 (1020)
.......||+.|+|||++.+..++.++||||+|+++|||++|+.||...
T Consensus 185 ----~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~ 233 (360)
T 3eqc_A 185 ----SMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPP 233 (360)
T ss_dssp ----HC----CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCC
T ss_pred ----ccccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence 1223457899999999999999999999999999999999999999743
No 207
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.5e-37 Score=347.70 Aligned_cols=241 Identities=23% Similarity=0.353 Sum_probs=199.9
Q ss_pred ccCCCcCCeeeccCCeEEEEEEe-CCCCEEEEEEecCCch--------hhHHHHHHHHHHHHHcCCCccceEeeEEeccC
Q 035998 741 TNNFDQANIIGCGGFGLVYRATL-PDGRNVAIKRLSGDCG--------QMEREFRAEVEALSRAQHPNLVHLQGYCMHKN 811 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~--------~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~ 811 (1020)
.++|++.+.||+|+||.||+|+. .+++.||||++..... ...+.+.+|++++++++||||+++++++.+.+
T Consensus 23 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~~ 102 (335)
T 3dls_A 23 SQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQG 102 (335)
T ss_dssp HHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECSS
T ss_pred ccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeCC
Confidence 46799999999999999999985 4688999999976531 12235678999999999999999999999999
Q ss_pred ceEEEEEeccCC-ChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeecc
Q 035998 812 DRLLIYSFMENG-SLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFG 890 (1020)
Q Consensus 812 ~~~lv~e~~~~g-~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg 890 (1020)
..++||||+.+| +|.+++... ..+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||
T Consensus 103 ~~~lv~e~~~~g~~l~~~~~~~----~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~Dfg 175 (335)
T 3dls_A 103 FFQLVMEKHGSGLDLFAFIDRH----PRLDEPLASYIFRQLVSAVGYLRLK---DIIHRDIKDENIVIAEDFTIKLIDFG 175 (335)
T ss_dssp EEEEEEECCTTSCBHHHHHHTC----CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCT
T ss_pred EEEEEEEeCCCCccHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHhC---CeEEeccCHHHEEEcCCCcEEEeecc
Confidence 999999999777 999988764 4689999999999999999999999 99999999999999999999999999
Q ss_pred ccccccCCCCcccccccccccCccCccccCCCCC-CchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhc
Q 035998 891 LARLILSPYDTHVTTDLVGTLGYIPPEYGQASVA-TYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQEN 969 (1020)
Q Consensus 891 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~ 969 (1020)
+++..... .......||+.|+|||++.+..+ +.++||||+|+++|||++|+.||......
T Consensus 176 ~a~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~---------------- 236 (335)
T 3dls_A 176 SAAYLERG---KLFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEET---------------- 236 (335)
T ss_dssp TCEECCTT---CCBCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGGG----------------
T ss_pred cceECCCC---CceeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHHH----------------
Confidence 99876432 22334578999999999888776 88999999999999999999999642110
Q ss_pred ccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 970 RESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 970 ~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
.......+. . ....+.+++.+||+.||++|||++|+++
T Consensus 237 ~~~~~~~~~---~----~~~~l~~li~~~L~~dP~~Rps~~ell~ 274 (335)
T 3dls_A 237 VEAAIHPPY---L----VSKELMSLVSGLLQPVPERRTTLEKLVT 274 (335)
T ss_dssp TTTCCCCSS---C----CCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred HhhccCCCc---c----cCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 000000010 0 1235889999999999999999999987
No 208
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=100.00 E-value=4e-37 Score=355.03 Aligned_cols=252 Identities=24% Similarity=0.339 Sum_probs=191.3
Q ss_pred hccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCch--------hhHHHHHHHHHHHHHcCCCccceEeeEEecc
Q 035998 740 STNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCG--------QMEREFRAEVEALSRAQHPNLVHLQGYCMHK 810 (1020)
Q Consensus 740 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~--------~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~ 810 (1020)
..++|.+.+.||+|+||.||+|... +++.||||++..... .....+.+|++++++++||||+++++++. .
T Consensus 133 ~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~-~ 211 (419)
T 3i6u_A 133 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFD-A 211 (419)
T ss_dssp HHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEE-S
T ss_pred hhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEe-c
Confidence 3578999999999999999999864 689999999875321 11224789999999999999999999975 4
Q ss_pred CceEEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCC---CeEEe
Q 035998 811 NDRLLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNF---GAHLA 887 (1020)
Q Consensus 811 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~---~~kl~ 887 (1020)
+..++||||+++|+|.+++... ..+++..+..++.|++.||+|||++ +|+||||||+||+++.++ .+||+
T Consensus 212 ~~~~lv~e~~~~g~L~~~l~~~----~~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~NIll~~~~~~~~~kl~ 284 (419)
T 3i6u_A 212 EDYYIVLELMEGGELFDKVVGN----KRLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLLSSQEEDCLIKIT 284 (419)
T ss_dssp SEEEEEEECCTTCBGGGGTSSS----CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSSSCCEEEC
T ss_pred CceEEEEEcCCCCcHHHHHhcc----CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEecCCCcceEEEe
Confidence 5579999999999998887653 5689999999999999999999999 999999999999997544 59999
Q ss_pred eccccccccCCCCcccccccccccCccCccccC---CCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHH
Q 035998 888 DFGLARLILSPYDTHVTTDLVGTLGYIPPEYGQ---ASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIR 964 (1020)
Q Consensus 888 Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~ 964 (1020)
|||+++.... ........||+.|+|||++. ...++.++||||+||++|||++|+.||........ .....
T Consensus 285 DFG~a~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~~~--~~~~i-- 357 (419)
T 3i6u_A 285 DFGHSKILGE---TSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVS--LKDQI-- 357 (419)
T ss_dssp CSSTTTSCC--------------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSSCC--HHHHH--
T ss_pred ecccceecCC---CccccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcchHH--HHHHH--
Confidence 9999987643 22334567999999999875 36788999999999999999999999975432221 11111
Q ss_pred HHhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 965 MRQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 965 ~~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
.. .... ..+..... ....+.+++.+||+.||++||+++|+++
T Consensus 358 -~~-~~~~--~~~~~~~~----~~~~~~~li~~~L~~dP~~Rps~~e~l~ 399 (419)
T 3i6u_A 358 -TS-GKYN--FIPEVWAE----VSEKALDLVKKLLVVDPKARFTTEEALR 399 (419)
T ss_dssp -HT-TCCC--CCHHHHTT----SCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred -hc-CCCC--CCchhhcc----cCHHHHHHHHHHccCChhHCcCHHHHhC
Confidence 11 1000 01111111 1235889999999999999999999987
No 209
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=100.00 E-value=5.1e-37 Score=347.76 Aligned_cols=258 Identities=25% Similarity=0.387 Sum_probs=205.8
Q ss_pred HHHHHHhccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCch--------hhHHHHHHHHHHHHHc-CCCccceE
Q 035998 734 IDDILESTNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCG--------QMEREFRAEVEALSRA-QHPNLVHL 803 (1020)
Q Consensus 734 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~--------~~~~~~~~E~~~l~~l-~h~niv~l 803 (1020)
+.......++|++.+.||+|+||.||+|+.. +|+.||||++..... ...+.+.+|+.+++++ +||||+++
T Consensus 86 ~~~~~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~ 165 (365)
T 2y7j_A 86 WAAAKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITL 165 (365)
T ss_dssp HHHHHHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCE
T ss_pred chhhhhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEE
Confidence 3334445578999999999999999999975 799999999875431 1235678899999999 79999999
Q ss_pred eeEEeccCceEEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCC
Q 035998 804 QGYCMHKNDRLLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFG 883 (1020)
Q Consensus 804 ~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~ 883 (1020)
++++......++||||+++++|.+++... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++.
T Consensus 166 ~~~~~~~~~~~lv~e~~~g~~L~~~l~~~----~~l~~~~~~~i~~qi~~~L~~LH~~---gi~H~Dlkp~NIl~~~~~~ 238 (365)
T 2y7j_A 166 IDSYESSSFMFLVFDLMRKGELFDYLTEK----VALSEKETRSIMRSLLEAVSFLHAN---NIVHRDLKPENILLDDNMQ 238 (365)
T ss_dssp EEEEEBSSEEEEEECCCTTCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCC
T ss_pred EEEEeeCCEEEEEEEeCCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCC
Confidence 99999999999999999999999999864 4689999999999999999999999 9999999999999999999
Q ss_pred eEEeeccccccccCCCCcccccccccccCccCccccC------CCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCccc
Q 035998 884 AHLADFGLARLILSPYDTHVTTDLVGTLGYIPPEYGQ------ASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRD 957 (1020)
Q Consensus 884 ~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~------~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~ 957 (1020)
+||+|||++...... .......||+.|+|||++. ...++.++||||+||++|||++|+.||..... ..
T Consensus 239 ikl~DfG~~~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~---~~ 312 (365)
T 2y7j_A 239 IRLSDFGFSCHLEPG---EKLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQ---IL 312 (365)
T ss_dssp EEECCCTTCEECCTT---CCBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSSH---HH
T ss_pred EEEEecCcccccCCC---cccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCCCH---HH
Confidence 999999999876432 2234467899999999875 34688999999999999999999999964321 11
Q ss_pred HHHHHHHHHhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 958 LISWVIRMRQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 958 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
. ...+...... ........ ....+.+++.+||+.||++||+++|+++
T Consensus 313 ~---~~~i~~~~~~---~~~~~~~~----~~~~~~~li~~~L~~dP~~Rps~~ell~ 359 (365)
T 2y7j_A 313 M---LRMIMEGQYQ---FSSPEWDD----RSSTVKDLISRLLQVDPEARLTAEQALQ 359 (365)
T ss_dssp H---HHHHHHTCCC---CCHHHHSS----SCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred H---HHHHHhCCCC---CCCccccc----CCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 1 1111111100 00000011 1235889999999999999999999987
No 210
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=100.00 E-value=1.7e-37 Score=347.46 Aligned_cols=262 Identities=26% Similarity=0.386 Sum_probs=199.6
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc--hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC--GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIY 817 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 817 (1020)
.++|++.+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 103 (331)
T 4aaa_A 24 MEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVF 103 (331)
T ss_dssp GGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEE
Confidence 357899999999999999999875 58999999986543 233456889999999999999999999999999999999
Q ss_pred EeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccC
Q 035998 818 SFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILS 897 (1020)
Q Consensus 818 e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~ 897 (1020)
||+++++|..+.... ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++....
T Consensus 104 e~~~~~~l~~~~~~~----~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~ 176 (331)
T 4aaa_A 104 EFVDHTILDDLELFP----NGLDYQVVQKYLFQIINGIGFCHSH---NIIHRDIKPENILVSQSGVVKLCDFGFARTLAA 176 (331)
T ss_dssp ECCSEEHHHHHHHST----TCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCTTC-----
T ss_pred ecCCcchHHHHHhhc----cCCCHHHHHHHHHHHHHHHHHHHHC---CEEccCcChheEEEcCCCcEEEEeCCCceeecC
Confidence 999999998876543 4689999999999999999999999 999999999999999999999999999987643
Q ss_pred CCCcccccccccccCccCccccCCC-CCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHH-----------
Q 035998 898 PYDTHVTTDLVGTLGYIPPEYGQAS-VATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRM----------- 965 (1020)
Q Consensus 898 ~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~----------- 965 (1020)
.. .......|++.|+|||++.+. .++.++||||+|+++|||++|+.||...... +........
T Consensus 177 ~~--~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~---~~~~~~~~~~~~~~~~~~~~ 251 (331)
T 4aaa_A 177 PG--EVYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDI---DQLYHIMMCLGNLIPRHQEL 251 (331)
T ss_dssp ---------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH---HHHHHHHHHHCSCCHHHHHH
T ss_pred Cc--cccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCcH---HHHHHHHHHhCCCChhhhhH
Confidence 22 223345789999999988775 7899999999999999999999999754321 111111110
Q ss_pred -HhhcccccccCccccCcc-----CHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 966 -RQENRESEVLDPFIYDKQ-----HDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 966 -~~~~~~~~~~d~~~~~~~-----~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
...........+...... .+.....+.+++.+||+.||++|||++|+++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~ 306 (331)
T 4aaa_A 252 FNKNPVFAGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLH 306 (331)
T ss_dssp HHHCGGGTTCCCCCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred hhhccccccccCccccccchhhhcccchhHHHHHHHHHHhccCcccCCCHHHHhc
Confidence 000000111111111111 1122346889999999999999999999986
No 211
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=100.00 E-value=1.3e-37 Score=347.97 Aligned_cols=262 Identities=24% Similarity=0.298 Sum_probs=193.5
Q ss_pred hccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCch--hhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEE
Q 035998 740 STNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCG--QMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLI 816 (1020)
Q Consensus 740 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 816 (1020)
..++|++.+.||+|+||.||+|+.. +++.||||++..... ...+.+.+|++++++++||||+++++++.+.+..++|
T Consensus 32 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 111 (329)
T 3gbz_A 32 SIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHLI 111 (329)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEEEE
T ss_pred chhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEEEE
Confidence 4568999999999999999999854 788999999975532 2235677899999999999999999999999999999
Q ss_pred EEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEc-----CCCCeEEeeccc
Q 035998 817 YSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLD-----GNFGAHLADFGL 891 (1020)
Q Consensus 817 ~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~-----~~~~~kl~Dfg~ 891 (1020)
|||+++ +|.+++... ..+++..++.++.|++.||+|||++ +|+||||||+||+++ .++.+||+|||+
T Consensus 112 ~e~~~~-~L~~~~~~~----~~~~~~~~~~i~~ql~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~ 183 (329)
T 3gbz_A 112 FEYAEN-DLKKYMDKN----PDVSMRVIKSFLYQLINGVNFCHSR---RCLHRDLKPQNLLLSVSDASETPVLKIGDFGL 183 (329)
T ss_dssp EECCSE-EHHHHHHHC----TTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEC-----CCEEEECCTTH
T ss_pred EecCCC-CHHHHHhhc----CCCCHHHHHHHHHHHHHHHHHHHhC---CEECCCCCHHHEEEecCCCCccceEEECcCCC
Confidence 999985 999988764 4589999999999999999999999 999999999999994 455699999999
Q ss_pred cccccCCCCcccccccccccCccCccccCCC-CCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcc
Q 035998 892 ARLILSPYDTHVTTDLVGTLGYIPPEYGQAS-VATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENR 970 (1020)
Q Consensus 892 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~ 970 (1020)
++...... .......||+.|+|||++.+. .++.++||||+||++|||++|+.||..... .+.............
T Consensus 184 a~~~~~~~--~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~---~~~~~~~~~~~~~~~ 258 (329)
T 3gbz_A 184 ARAFGIPI--RQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSE---IDQLFKIFEVLGLPD 258 (329)
T ss_dssp HHHHC-------------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHHHHHHCCCC
T ss_pred ccccCCcc--cccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCH---HHHHHHHHHHhCCCc
Confidence 98764322 223345789999999988764 589999999999999999999999974322 111111111110000
Q ss_pred ccccc---------C--ccccCcc-----CHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 971 ESEVL---------D--PFIYDKQ-----HDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 971 ~~~~~---------d--~~~~~~~-----~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
..... . +...... .......+.+++.+||+.||++|||++|+++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 318 (329)
T 3gbz_A 259 DTTWPGVTALPDWKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALE 318 (329)
T ss_dssp TTTSTTGGGSTTCCTTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred hhhhhhhhhhhhhhhhhhhhccccHhhhcccccCHHHHHHHHHHccCChhhCCCHHHHhC
Confidence 00000 0 0000000 0012246789999999999999999999987
No 212
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=3.1e-37 Score=348.33 Aligned_cols=252 Identities=27% Similarity=0.355 Sum_probs=201.1
Q ss_pred cCCCcCCeeeccCCeEEEEEEe----CCCCEEEEEEecCCc----hhhHHHHHHHHHHHHHc-CCCccceEeeEEeccCc
Q 035998 742 NNFDQANIIGCGGFGLVYRATL----PDGRNVAIKRLSGDC----GQMEREFRAEVEALSRA-QHPNLVHLQGYCMHKND 812 (1020)
Q Consensus 742 ~~~~~~~~lg~G~~g~V~~~~~----~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~ 812 (1020)
++|++.+.||+|+||.||+|+. .+++.||||++.... ....+.+.+|+++++++ +||||+++++++.....
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~ 133 (355)
T 1vzo_A 54 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETK 133 (355)
T ss_dssp GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTE
T ss_pred cceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCce
Confidence 5799999999999999999987 378999999986532 12234567899999999 69999999999999999
Q ss_pred eEEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeecccc
Q 035998 813 RLLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLA 892 (1020)
Q Consensus 813 ~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~ 892 (1020)
.++||||+++++|.+++... ..+++..+..++.||+.||+|||++ +|+||||||+||+++.++.+||+|||++
T Consensus 134 ~~lv~e~~~~~~L~~~l~~~----~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~DfG~a 206 (355)
T 1vzo_A 134 LHLILDYINGGELFTHLSQR----ERFTEHEVQIYVGEIVLALEHLHKL---GIIYRDIKLENILLDSNGHVVLTDFGLS 206 (355)
T ss_dssp EEEEECCCCSCBHHHHHHHH----SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEESCSSEE
T ss_pred EEEEeecCCCCCHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCcEEEeeCCCC
Confidence 99999999999999999865 4689999999999999999999999 9999999999999999999999999999
Q ss_pred ccccCCCCcccccccccccCccCccccCC--CCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcc
Q 035998 893 RLILSPYDTHVTTDLVGTLGYIPPEYGQA--SVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENR 970 (1020)
Q Consensus 893 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~ 970 (1020)
+...... ........||+.|+|||++.+ ..++.++|||||||++|||++|+.||........... ..........
T Consensus 207 ~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~--~~~~~~~~~~ 283 (355)
T 1vzo_A 207 KEFVADE-TERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAE--ISRRILKSEP 283 (355)
T ss_dssp EECCGGG-GGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHH--HHHHHHHCCC
T ss_pred eecccCC-CCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCccchHHH--HHHHHhccCC
Confidence 8653221 222334679999999999875 4578999999999999999999999975443322221 1112111110
Q ss_pred cccccCccccCccCHHHHHHHHHHHhhccCCCCCCCC-----CHHHHHH
Q 035998 971 ESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRP-----TTQQLVS 1014 (1020)
Q Consensus 971 ~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RP-----s~~evl~ 1014 (1020)
. . +......+.+++.+||+.||.+|| +++|+++
T Consensus 284 --~-----~----~~~~~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~ 321 (355)
T 1vzo_A 284 --P-----Y----PQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKE 321 (355)
T ss_dssp --C-----C----CTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHT
T ss_pred --C-----C----CcccCHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHc
Confidence 0 0 111223578999999999999999 9999986
No 213
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=100.00 E-value=1.4e-36 Score=340.55 Aligned_cols=248 Identities=21% Similarity=0.361 Sum_probs=204.5
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc---hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC---GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLI 816 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 816 (1020)
.++|.+.+.||+|+||.||+|+.. +++.||+|++.... ....+.+.+|++++++++||||+++++++.+.+..++|
T Consensus 40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 119 (335)
T 2owb_A 40 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV 119 (335)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred CCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEE
Confidence 457899999999999999999875 57899999987542 23456788999999999999999999999999999999
Q ss_pred EEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeecccccccc
Q 035998 817 YSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLIL 896 (1020)
Q Consensus 817 ~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~ 896 (1020)
|||+++++|.+++... ..+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++...
T Consensus 120 ~e~~~~~~L~~~~~~~----~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~ 192 (335)
T 2owb_A 120 LELCRRRSLLELHKRR----KALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEVKIGDFGLATKVE 192 (335)
T ss_dssp ECCCTTCBHHHHHHHH----CSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred EecCCCCCHHHHHhcc----CCCCHHHHHHHHHHHHHHHHHHHHC---CCEecCCCchhEEEcCCCCEEEeeccCceecc
Confidence 9999999999988764 4689999999999999999999999 99999999999999999999999999998764
Q ss_pred CCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccccccC
Q 035998 897 SPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVLD 976 (1020)
Q Consensus 897 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 976 (1020)
... .......|++.|+|||++.+..++.++||||||+++|||++|+.||...... + .......... ..
T Consensus 193 ~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~---~---~~~~~~~~~~--~~-- 260 (335)
T 2owb_A 193 YDG--ERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLK---E---TYLRIKKNEY--SI-- 260 (335)
T ss_dssp STT--CCBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHH---H---HHHHHHHTCC--CC--
T ss_pred cCc--ccccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCHH---H---HHHHHhcCCC--CC--
Confidence 322 2233467899999999999999999999999999999999999999643211 1 1111111110 00
Q ss_pred ccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 977 PFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 977 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
+ .. ....+.+++.+||+.||++||+++|+++
T Consensus 261 ~---~~----~~~~~~~li~~~l~~dp~~Rps~~ell~ 291 (335)
T 2owb_A 261 P---KH----INPVAASLIQKMLQTDPTARPTINELLN 291 (335)
T ss_dssp C---TT----SCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred C---cc----CCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 0 11 1135789999999999999999999986
No 214
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=100.00 E-value=2.1e-36 Score=350.69 Aligned_cols=200 Identities=27% Similarity=0.342 Sum_probs=167.6
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc--hhhHHHHHHHHHHHHHcCCCccceEeeEEecc-----Cc
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC--GQMEREFRAEVEALSRAQHPNLVHLQGYCMHK-----ND 812 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-----~~ 812 (1020)
.++|++.+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|++++++++||||+++++++... ..
T Consensus 25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~ 104 (432)
T 3n9x_A 25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDE 104 (432)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCe
Confidence 468999999999999999999865 57889999997543 33456788999999999999999999999766 56
Q ss_pred eEEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeecccc
Q 035998 813 RLLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLA 892 (1020)
Q Consensus 813 ~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~ 892 (1020)
.|+||||++ ++|.+++... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++.+||+|||++
T Consensus 105 ~~lv~e~~~-~~L~~~~~~~----~~l~~~~~~~i~~qil~aL~~LH~~---givHrDlkp~NILl~~~~~~kL~DFGla 176 (432)
T 3n9x_A 105 LYIVLEIAD-SDLKKLFKTP----IFLTEEHIKTILYNLLLGENFIHES---GIIHRDLKPANCLLNQDCSVKVCDFGLA 176 (432)
T ss_dssp EEEEEECCS-EEHHHHHHSS----CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTC
T ss_pred EEEEEecCC-cCHHHHHhcc----CCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHeEECCCCCEEEccCCCc
Confidence 899999997 5999888753 5689999999999999999999999 9999999999999999999999999999
Q ss_pred ccccCCCCc--------------------ccccccccccCccCcccc-CCCCCCchhhHHHHHHHHHHHHcCCCCCC
Q 035998 893 RLILSPYDT--------------------HVTTDLVGTLGYIPPEYG-QASVATYKGDVYSFGVVLLELLTGKRPMD 948 (1020)
Q Consensus 893 ~~~~~~~~~--------------------~~~~~~~gt~~y~aPE~~-~~~~~~~~~DvwSlGvil~elltg~~pf~ 948 (1020)
+........ ......+||+.|+|||++ ....++.++||||+||++|||++|..||.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~ 253 (432)
T 3n9x_A 177 RTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSHI 253 (432)
T ss_dssp EEC-------------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTTC
T ss_pred ccccccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhcccccc
Confidence 876433211 123557899999999975 66779999999999999999998655553
No 215
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=100.00 E-value=1.9e-37 Score=374.51 Aligned_cols=248 Identities=23% Similarity=0.394 Sum_probs=197.1
Q ss_pred CeeeccCCeEEEEEEeC---CCCEEEEEEecCCc--hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEEEeccC
Q 035998 748 NIIGCGGFGLVYRATLP---DGRNVAIKRLSGDC--GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIYSFMEN 822 (1020)
Q Consensus 748 ~~lg~G~~g~V~~~~~~---~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~ 822 (1020)
+.||+|+||.||+|.+. .++.||||+++... ....+++.+|++++++++|||||++++++. .+..++||||+++
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~-~~~~~lv~E~~~~ 453 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICE-AESWMLVMEMAEL 453 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEE-SSSEEEEEECCTT
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEe-cCCEEEEEEccCC
Confidence 47999999999999653 46789999997643 234578999999999999999999999986 4568899999999
Q ss_pred CChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccCCCCc-
Q 035998 823 GSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILSPYDT- 901 (1020)
Q Consensus 823 g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~- 901 (1020)
|+|.+++... ..+++..++.++.||+.||+|||++ +||||||||+||+++.++.+||+|||+++........
T Consensus 454 g~L~~~l~~~----~~l~~~~~~~i~~qi~~~L~yLH~~---~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~~ 526 (635)
T 4fl3_A 454 GPLNKYLQQN----RHVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYY 526 (635)
T ss_dssp EEHHHHHHHC----TTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC-----
T ss_pred CCHHHHHhhC----CCCCHHHHHHHHHHHHHHHHHHHHC---CEeCCCCChHhEEEeCCCCEEEEEcCCccccccCcccc
Confidence 9999999754 4689999999999999999999999 9999999999999999999999999999876543221
Q ss_pred ccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHc-CCCCCCCCCCCCcccHHHHHHHHHhhcccccccCcccc
Q 035998 902 HVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLT-GKRPMDMCKPKGSRDLISWVIRMRQENRESEVLDPFIY 980 (1020)
Q Consensus 902 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 980 (1020)
.......+|+.|+|||++.+..++.++|||||||++|||++ |+.||...... .. ...+..... ..
T Consensus 527 ~~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~---~~---~~~i~~~~~-~~------- 592 (635)
T 4fl3_A 527 KAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS---EV---TAMLEKGER-MG------- 592 (635)
T ss_dssp --------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHH---HH---HHHHHTTCC-CC-------
T ss_pred ccccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHH---HH---HHHHHcCCC-CC-------
Confidence 22233456788999999999999999999999999999998 99999754321 11 111111111 11
Q ss_pred CccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 981 DKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 981 ~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
.+......+.+++.+||+.||++||+++++++.|+++
T Consensus 593 --~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~ 629 (635)
T 4fl3_A 593 --CPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNY 629 (635)
T ss_dssp --CCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred --CCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence 0111224688999999999999999999999999875
No 216
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.4e-37 Score=346.13 Aligned_cols=255 Identities=25% Similarity=0.304 Sum_probs=187.4
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCchhhHHHHHHHHHHHHHcC-CCccceEeeEEe--------cc
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCGQMEREFRAEVEALSRAQ-HPNLVHLQGYCM--------HK 810 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~--------~~ 810 (1020)
..+|++.+.||+|+||.||+|+.. +++.||||++........+.+.+|+.+++++. ||||+++++++. ..
T Consensus 27 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~ 106 (337)
T 3ll6_A 27 ELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQ 106 (337)
T ss_dssp TEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSS
T ss_pred CceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCC
Confidence 357899999999999999999864 78999999987666666678899999999996 999999999994 23
Q ss_pred CceEEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCC--eEecCCCCCCEEEcCCCCeEEee
Q 035998 811 NDRLLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPH--ILHRDIKSSNILLDGNFGAHLAD 888 (1020)
Q Consensus 811 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~--ivH~Dlkp~NIll~~~~~~kl~D 888 (1020)
...++||||++ |+|.+++..... ...+++..++.++.|++.||+|||+. + |+||||||+||+++.++.+||+|
T Consensus 107 ~~~~lv~e~~~-g~L~~~l~~~~~-~~~~~~~~~~~i~~qi~~~l~~LH~~---~~~ivH~Dikp~NIl~~~~~~~kl~D 181 (337)
T 3ll6_A 107 AEFLLLTELCK-GQLVEFLKKMES-RGPLSCDTVLKIFYQTCRAVQHMHRQ---KPPIIHRDLKVENLLLSNQGTIKLCD 181 (337)
T ss_dssp EEEEEEEECCS-EEHHHHHHHHHT-TCSCCHHHHHHHHHHHHHHHHHHHTS---SSCCBCCCCCGGGCEECTTSCEEBCC
T ss_pred ceEEEEEEecC-CCHHHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHhC---CCCEEEccCCcccEEECCCCCEEEec
Confidence 34789999996 689888876422 34689999999999999999999998 8 99999999999999999999999
Q ss_pred ccccccccCCCCcc----------cccccccccCccCcccc---CCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCc
Q 035998 889 FGLARLILSPYDTH----------VTTDLVGTLGYIPPEYG---QASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGS 955 (1020)
Q Consensus 889 fg~~~~~~~~~~~~----------~~~~~~gt~~y~aPE~~---~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~ 955 (1020)
||+++......... ......||+.|+|||++ .+..++.++||||||+++|||++|+.||.......
T Consensus 182 fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~- 260 (337)
T 3ll6_A 182 FGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKLR- 260 (337)
T ss_dssp CTTCBCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC--------
T ss_pred CccceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhHHH-
Confidence 99998764322111 11134689999999988 56778999999999999999999999996432211
Q ss_pred ccHHHHHHHHHhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 956 RDLISWVIRMRQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 956 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
..... ... .. ... ....+.+++.+||+.||++||+++|+++.|+++
T Consensus 261 -----~~~~~---~~~---~~---~~~----~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~~~ 306 (337)
T 3ll6_A 261 -----IVNGK---YSI---PP---HDT----QYTVFHSLIRAMLQVNPEERLSIAEVVHQLQEI 306 (337)
T ss_dssp -------------CCC---CT---TCC----SSGGGHHHHHHHSCSSGGGSCCHHHHHHHHHHH
T ss_pred -----hhcCc---ccC---Cc---ccc----cchHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 00000 000 00 001 112377899999999999999999999999875
No 217
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=4.2e-37 Score=348.51 Aligned_cols=256 Identities=23% Similarity=0.305 Sum_probs=194.4
Q ss_pred ccCCCcCCeeeccCCeEEEEEEe-CCCCEEEEEEecCCc--hhhHHHHHHHHHHHHHcCCCccceEeeEEeccC------
Q 035998 741 TNNFDQANIIGCGGFGLVYRATL-PDGRNVAIKRLSGDC--GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKN------ 811 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------ 811 (1020)
.++|++.+.||+|+||.||+|.. .+|+.||||++.... ....+.+.+|+++++.++||||+++++++....
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 103 (367)
T 1cm8_A 24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT 103 (367)
T ss_dssp BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCc
Confidence 46799999999999999999986 478999999986542 233467889999999999999999999997653
Q ss_pred ceEEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccc
Q 035998 812 DRLLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGL 891 (1020)
Q Consensus 812 ~~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~ 891 (1020)
..++||||+ +++|.+++.. ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+
T Consensus 104 ~~~lv~e~~-~~~L~~~~~~-----~~l~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~ 174 (367)
T 1cm8_A 104 DFYLVMPFM-GTDLGKLMKH-----EKLGEDRIQFLVYQMLKGLRYIHAA---GIIHRDLKPGNLAVNEDCELKILDFGL 174 (367)
T ss_dssp CCEEEEECC-SEEHHHHHHH-----CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTT
T ss_pred eEEEEEecC-CCCHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCcCHHHEEEcCCCCEEEEeeec
Confidence 459999999 7899999875 3589999999999999999999999 999999999999999999999999999
Q ss_pred cccccCCCCcccccccccccCccCccccCC-CCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhc-
Q 035998 892 ARLILSPYDTHVTTDLVGTLGYIPPEYGQA-SVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQEN- 969 (1020)
Q Consensus 892 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~- 969 (1020)
++..... .....+|+.|+|||++.+ ..++.++||||+||++|||++|+.||..... .+............
T Consensus 175 a~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~---~~~l~~i~~~~g~~~ 246 (367)
T 1cm8_A 175 ARQADSE-----MTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDH---LDQLKEIMKVTGTPP 246 (367)
T ss_dssp CEECCSS-----CCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHHHHHHCCCC
T ss_pred ccccccc-----cCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCH---HHHHHHHHHhcCCCC
Confidence 9875322 234578999999998776 7899999999999999999999999975322 11111111110000
Q ss_pred -----------------ccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 970 -----------------RESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 970 -----------------~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
...... +.......+.....+.+++.+|++.||++|||++|+++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~ 307 (367)
T 1cm8_A 247 AEFVQRLQSDEAKNYMKGLPELE-KKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALA 307 (367)
T ss_dssp HHHHHTCSCHHHHHHHHHSCCCC-CCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHhCCCCC-CCCHHHHCCCCCHHHHHHHHHHccCChhHCCCHHHHhc
Confidence 000000 00001111122346889999999999999999999987
No 218
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=100.00 E-value=7.4e-37 Score=358.13 Aligned_cols=195 Identities=26% Similarity=0.347 Sum_probs=154.7
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc--hhhHHHHHHHHHHHHHcCCCccceEeeEEecc-----Cc
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC--GQMEREFRAEVEALSRAQHPNLVHLQGYCMHK-----ND 812 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-----~~ 812 (1020)
.++|++.+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|++++++++||||+++++++... ..
T Consensus 52 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 131 (458)
T 3rp9_A 52 PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDE 131 (458)
T ss_dssp CTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred CCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCce
Confidence 468999999999999999999865 78999999987543 33446788999999999999999999998543 56
Q ss_pred eEEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeecccc
Q 035998 813 RLLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLA 892 (1020)
Q Consensus 813 ~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~ 892 (1020)
.|+||||++ ++|.+++... ..+++..+..++.||+.||+|||+. +||||||||+|||++.++.+||+|||++
T Consensus 132 ~~lv~e~~~-~~L~~~~~~~----~~l~~~~~~~~~~qi~~aL~~LH~~---~iiHrDlKp~NILl~~~~~~kl~DFGla 203 (458)
T 3rp9_A 132 LYVVLEIAD-SDFKKLFRTP----VYLTELHIKTLLYNLLVGVKYVHSA---GILHRDLKPANCLVNQDCSVKVCDFGLA 203 (458)
T ss_dssp EEEEECCCS-EEHHHHHHSS----CCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCEEECCCTTC
T ss_pred EEEEEeccc-cchhhhcccC----CCCCHHHHHHHHHHHHHHHHHHHhC---CcCCCCCChhhEEECCCCCEeecccccc
Confidence 899999985 6888888653 5689999999999999999999999 9999999999999999999999999999
Q ss_pred ccccCCCCc-------------------------ccccccccccCccCcccc-CCCCCCchhhHHHHHHHHHHHHcC
Q 035998 893 RLILSPYDT-------------------------HVTTDLVGTLGYIPPEYG-QASVATYKGDVYSFGVVLLELLTG 943 (1020)
Q Consensus 893 ~~~~~~~~~-------------------------~~~~~~~gt~~y~aPE~~-~~~~~~~~~DvwSlGvil~elltg 943 (1020)
+....+... ......+||+.|+|||++ ....++.++||||+||++|||++|
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~elltg 280 (458)
T 3rp9_A 204 RTVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNM 280 (458)
T ss_dssp BCTTSCTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHTT
T ss_pred hhccCccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHHh
Confidence 876432211 123446789999999975 567799999999999999999993
No 219
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=100.00 E-value=1.6e-36 Score=331.93 Aligned_cols=245 Identities=26% Similarity=0.355 Sum_probs=202.6
Q ss_pred cCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc---hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEE
Q 035998 742 NNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC---GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIY 817 (1020)
Q Consensus 742 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 817 (1020)
++|++.+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 14 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 93 (284)
T 2vgo_A 14 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLML 93 (284)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEEE
Confidence 57899999999999999999875 57789999986432 123467889999999999999999999999999999999
Q ss_pred EeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccC
Q 035998 818 SFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILS 897 (1020)
Q Consensus 818 e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~ 897 (1020)
||+++++|.+++... ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++.....
T Consensus 94 e~~~~~~L~~~l~~~----~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~ 166 (284)
T 2vgo_A 94 EFAPRGELYKELQKH----GRFDEQRSATFMEELADALHYCHER---KVIHRDIKPENLLMGYKGELKIADFGWSVHAPS 166 (284)
T ss_dssp CCCTTEEHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECTTCCEEECCCTTCEECSS
T ss_pred EeCCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEEcCCCCEEEecccccccCcc
Confidence 999999999999865 3589999999999999999999999 999999999999999999999999999876532
Q ss_pred CCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccccccCc
Q 035998 898 PYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVLDP 977 (1020)
Q Consensus 898 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 977 (1020)
. ......|++.|+|||++.+..++.++||||+|+++|+|++|+.||..... ............
T Consensus 167 ~----~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~------~~~~~~~~~~~~------- 229 (284)
T 2vgo_A 167 L----RRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSH------TETHRRIVNVDL------- 229 (284)
T ss_dssp S----CBCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSH------HHHHHHHHTTCC-------
T ss_pred c----ccccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCCH------hHHHHHHhcccc-------
Confidence 2 22345789999999999999999999999999999999999999974321 111111111110
Q ss_pred cccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 978 FIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 978 ~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
.. +......+.+++.+|++.||.+||+++|+++
T Consensus 230 ~~----~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~ 262 (284)
T 2vgo_A 230 KF----PPFLSDGSKDLISKLLRYHPPQRLPLKGVME 262 (284)
T ss_dssp CC----CTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred CC----CCcCCHHHHHHHHHHhhcCHhhCCCHHHHhh
Confidence 00 0111235789999999999999999999986
No 220
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=2.3e-37 Score=353.54 Aligned_cols=262 Identities=21% Similarity=0.285 Sum_probs=197.8
Q ss_pred HhccCCCcCCeeeccCCeEEEEEEe-CCCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCccceEeeEEecc-------
Q 035998 739 ESTNNFDQANIIGCGGFGLVYRATL-PDGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNLVHLQGYCMHK------- 810 (1020)
Q Consensus 739 ~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~------- 810 (1020)
...++|++.+.||+|+||.||+|+. .+|+.||||++..+.. ...+|+++++.++||||+++++++...
T Consensus 4 ~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~----~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~~ 79 (383)
T 3eb0_A 4 TSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPR----YKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPKP 79 (383)
T ss_dssp --CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTT----SCCHHHHHHTTCCCTTBCCEEEEEEEC-------
T ss_pred cccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcc----hHHHHHHHHHHcCCCCccchhheeeecCcccccc
Confidence 4567899999999999999999986 5789999999876532 234799999999999999999998543
Q ss_pred -------------------------------CceEEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhH
Q 035998 811 -------------------------------NDRLLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLH 859 (1020)
Q Consensus 811 -------------------------------~~~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH 859 (1020)
...++||||++ |+|.+.+.........+++..+..++.|++.||+|||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH 158 (383)
T 3eb0_A 80 PQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIH 158 (383)
T ss_dssp ------------------------------CCEEEEEECCCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 23789999998 4888887765555568999999999999999999999
Q ss_pred hcCCCCeEecCCCCCCEEEc-CCCCeEEeeccccccccCCCCcccccccccccCccCccccCCC-CCCchhhHHHHHHHH
Q 035998 860 QSCEPHILHRDIKSSNILLD-GNFGAHLADFGLARLILSPYDTHVTTDLVGTLGYIPPEYGQAS-VATYKGDVYSFGVVL 937 (1020)
Q Consensus 860 ~~~~~~ivH~Dlkp~NIll~-~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlGvil 937 (1020)
+. +|+||||||+||+++ .++.+||+|||+++..... .......+|+.|+|||++.+. .++.++||||+||++
T Consensus 159 ~~---gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~---~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il 232 (383)
T 3eb0_A 159 SL---GICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPS---EPSVAYICSRFYRAPELMLGATEYTPSIDLWSIGCVF 232 (383)
T ss_dssp TT---TEECSCCCGGGEEEETTTTEEEECCCTTCEECCTT---SCCCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHHHHH
T ss_pred HC---cCccCccCHHHEEEcCCCCcEEEEECCCCcccCCC---CCCcCcccCCCccCHHHhcCCCCCCcchhhhhHHHHH
Confidence 99 999999999999998 6889999999999876432 223345789999999987764 589999999999999
Q ss_pred HHHHcCCCCCCCCCCCCcccHHHHHHHHHhhc----------ccccccCccccC-----ccCHHHHHHHHHHHhhccCCC
Q 035998 938 LELLTGKRPMDMCKPKGSRDLISWVIRMRQEN----------RESEVLDPFIYD-----KQHDKEMLRVLDIACLCLSES 1002 (1020)
Q Consensus 938 ~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~d~~~~~-----~~~~~~~~~l~~li~~cl~~d 1002 (1020)
|||++|+.||...... +............ ......-+.... ..+......+.+++.+||+.|
T Consensus 233 ~ell~g~~pf~~~~~~---~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~d 309 (383)
T 3eb0_A 233 GELILGKPLFSGETSI---DQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGTPSLAIDLLEQILRYE 309 (383)
T ss_dssp HHHHHSSCSSCCSSHH---HHHHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSS
T ss_pred HHHHhCCCCCCCCChH---HHHHHHHHHhCCCCHHHHHHhCcccccccCCccCcccHHhhCCCCCCHHHHHHHHHHccCC
Confidence 9999999999753221 2111111110000 000000000000 011122345889999999999
Q ss_pred CCCCCCHHHHHH
Q 035998 1003 PKVRPTTQQLVS 1014 (1020)
Q Consensus 1003 P~~RPs~~evl~ 1014 (1020)
|++|||+.|+++
T Consensus 310 P~~R~t~~e~l~ 321 (383)
T 3eb0_A 310 PDLRINPYEAMA 321 (383)
T ss_dssp GGGSCCHHHHHT
T ss_pred hhhCCCHHHHhc
Confidence 999999999986
No 221
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=4.6e-37 Score=346.02 Aligned_cols=263 Identities=27% Similarity=0.333 Sum_probs=196.9
Q ss_pred hccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCchh-----hHHHHHHHHHHHHHcCCCccceEeeEEeccCce
Q 035998 740 STNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCGQ-----MEREFRAEVEALSRAQHPNLVHLQGYCMHKNDR 813 (1020)
Q Consensus 740 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~-----~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 813 (1020)
..++|++.+.||+|+||.||+|+.. +|+.||||++...... ..+.+.+|++++++++||||+++++++.+.+..
T Consensus 8 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 87 (346)
T 1ua2_A 8 RAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNI 87 (346)
T ss_dssp -----CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCC
T ss_pred HhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCce
Confidence 4578999999999999999999975 6899999998753221 124678999999999999999999999999999
Q ss_pred EEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccc
Q 035998 814 LLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLAR 893 (1020)
Q Consensus 814 ~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~ 893 (1020)
++||||+++ +|..++... ...+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++
T Consensus 88 ~lv~e~~~~-~l~~~~~~~---~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~ 160 (346)
T 1ua2_A 88 SLVFDFMET-DLEVIIKDN---SLVLTPSHIKAYMLMTLQGLEYLHQH---WILHRDLKPNNLLLDENGVLKLADFGLAK 160 (346)
T ss_dssp EEEEECCSE-EHHHHHTTC---CSSCCSSHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECCCGGGS
T ss_pred EEEEEcCCC-CHHHHHHhc---CcCCCHHHHHHHHHHHHHHHHHHHHC---CEECCCCCHHHEEEcCCCCEEEEecccce
Confidence 999999986 788877653 34678889999999999999999999 99999999999999999999999999998
Q ss_pred cccCCCCcccccccccccCccCccccCC-CCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccc
Q 035998 894 LILSPYDTHVTTDLVGTLGYIPPEYGQA-SVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRES 972 (1020)
Q Consensus 894 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~ 972 (1020)
...... .......||+.|+|||++.+ ..++.++||||+||++|||++|..||..... .+...............
T Consensus 161 ~~~~~~--~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~~---~~~~~~i~~~~~~~~~~ 235 (346)
T 1ua2_A 161 SFGSPN--RAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSD---LDQLTRIFETLGTPTEE 235 (346)
T ss_dssp TTTSCC--CCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHHHHHHCCCCTT
T ss_pred eccCCc--ccCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCCH---HHHHHHHHHHcCCCChh
Confidence 764332 22344678999999998865 4589999999999999999999999865322 12222111111111000
Q ss_pred cccC------ccc---cCccC-----HHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 973 EVLD------PFI---YDKQH-----DKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 973 ~~~d------~~~---~~~~~-----~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
...+ ... ....+ ......+.+++.+||+.||++|||++|+++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 291 (346)
T 1ua2_A 236 QWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALK 291 (346)
T ss_dssp TSSSTTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred hhhhhccCcccccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhc
Confidence 0000 000 00000 122346889999999999999999999986
No 222
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=100.00 E-value=7.1e-37 Score=338.01 Aligned_cols=248 Identities=26% Similarity=0.419 Sum_probs=204.8
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc-hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEEE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC-GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIYS 818 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 818 (1020)
.+.|++.+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|+.++++++||||+++++++.+....++|||
T Consensus 21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 100 (303)
T 3a7i_A 21 EELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIME 100 (303)
T ss_dssp GGTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred HHHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEE
Confidence 356899999999999999999864 68999999997553 3345778999999999999999999999999999999999
Q ss_pred eccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccCC
Q 035998 819 FMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILSP 898 (1020)
Q Consensus 819 ~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~ 898 (1020)
|+++++|.+++.. ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++.....
T Consensus 101 ~~~~~~L~~~~~~-----~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~ 172 (303)
T 3a7i_A 101 YLGGGSALDLLEP-----GPLDETQIATILREILKGLDYLHSE---KKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDT 172 (303)
T ss_dssp CCTTEEHHHHHTT-----SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECBTT
T ss_pred eCCCCcHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChheEEECCCCCEEEeecccceecCcc
Confidence 9999999999864 3689999999999999999999999 9999999999999999999999999999876432
Q ss_pred CCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccccccCcc
Q 035998 899 YDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVLDPF 978 (1020)
Q Consensus 899 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 978 (1020)
. .......|++.|+|||++.+..++.++||||||+++|||++|+.||...... ......... .. +.
T Consensus 173 ~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~------~~~~~~~~~-~~-----~~ 238 (303)
T 3a7i_A 173 Q--IKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPM------KVLFLIPKN-NP-----PT 238 (303)
T ss_dssp B--CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH------HHHHHHHHS-CC-----CC
T ss_pred c--cccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCHH------HHHHHhhcC-CC-----CC
Confidence 1 2233457899999999999999999999999999999999999999743221 111111111 11 11
Q ss_pred ccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 979 IYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 979 ~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
..... ...+.+++.+||+.||++|||++|+++
T Consensus 239 ~~~~~----~~~l~~li~~~l~~dp~~Rps~~~ll~ 270 (303)
T 3a7i_A 239 LEGNY----SKPLKEFVEACLNKEPSFRPTAKELLK 270 (303)
T ss_dssp CCSSC----CHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred Ccccc----CHHHHHHHHHHcCCChhhCcCHHHHhh
Confidence 11111 235889999999999999999999986
No 223
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=100.00 E-value=2.1e-36 Score=332.02 Aligned_cols=247 Identities=24% Similarity=0.370 Sum_probs=197.4
Q ss_pred cCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc--hhhHHHHHHHHHHHHHcCCCccceEeeEEec----cCceE
Q 035998 742 NNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC--GQMEREFRAEVEALSRAQHPNLVHLQGYCMH----KNDRL 814 (1020)
Q Consensus 742 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~----~~~~~ 814 (1020)
+.|++.+.||+|+||.||+|... ++..||+|++.... ....+.+.+|++++++++||||+++++++.. ....+
T Consensus 26 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 105 (290)
T 1t4h_A 26 RFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIV 105 (290)
T ss_dssp CEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEE
T ss_pred eeEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEE
Confidence 45778889999999999999864 67899999987543 3345678899999999999999999999875 34578
Q ss_pred EEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCC--eEecCCCCCCEEEc-CCCCeEEeeccc
Q 035998 815 LIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPH--ILHRDIKSSNILLD-GNFGAHLADFGL 891 (1020)
Q Consensus 815 lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~--ivH~Dlkp~NIll~-~~~~~kl~Dfg~ 891 (1020)
+||||+++++|.+++... ..+++..++.++.|++.||+|||+. + |+||||||+||+++ .++.+||+|||+
T Consensus 106 lv~e~~~~~~L~~~l~~~----~~~~~~~~~~~~~qi~~~l~~lH~~---~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~ 178 (290)
T 1t4h_A 106 LVTELMTSGTLKTYLKRF----KVMKIKVLRSWCRQILKGLQFLHTR---TPPIIHRDLKCDNIFITGPTGSVKIGDLGL 178 (290)
T ss_dssp EEEECCCSCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHHTS---SSCCCCSCCCGGGEEESSTTSCEEECCTTG
T ss_pred EEEEecCCCCHHHHHHHc----cCCCHHHHHHHHHHHHHHHHHHHcC---CCCEEECCCCHHHEEEECCCCCEEEeeCCC
Confidence 999999999999999865 4689999999999999999999998 7 99999999999998 789999999999
Q ss_pred cccccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhccc
Q 035998 892 ARLILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRE 971 (1020)
Q Consensus 892 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~ 971 (1020)
+..... .......|++.|+|||++.+ .++.++||||+|+++|+|++|+.||..... .............
T Consensus 179 ~~~~~~----~~~~~~~~t~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~pf~~~~~-----~~~~~~~~~~~~~- 247 (290)
T 1t4h_A 179 ATLKRA----SFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQN-----AAQIYRRVTSGVK- 247 (290)
T ss_dssp GGGCCT----TSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSS-----HHHHHHHHTTTCC-
T ss_pred cccccc----cccccccCCcCcCCHHHHhc-cCCCcchHHHHHHHHHHHHhCCCCCCCcCc-----HHHHHHHHhccCC-
Confidence 976432 22334578999999998764 589999999999999999999999964322 1111111111111
Q ss_pred ccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 972 SEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 972 ~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
.. ..... ....+.+++.+||+.||.+|||++|+++
T Consensus 248 ~~----~~~~~----~~~~l~~li~~~l~~dp~~Rps~~ell~ 282 (290)
T 1t4h_A 248 PA----SFDKV----AIPEVKEIIEGCIRQNKDERYSIKDLLN 282 (290)
T ss_dssp CG----GGGGC----CCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred cc----ccCCC----CCHHHHHHHHHHccCChhhCCCHHHHhh
Confidence 10 00011 1135889999999999999999999987
No 224
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=100.00 E-value=2.5e-36 Score=328.82 Aligned_cols=247 Identities=23% Similarity=0.359 Sum_probs=195.1
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc---hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC---GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLI 816 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 816 (1020)
.++|++.+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|+++++.++||||+++++++.+.+..++|
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 89 (276)
T 2h6d_A 10 IGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMV 89 (276)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred eccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEE
Confidence 367999999999999999999975 78999999986532 12345788999999999999999999999999999999
Q ss_pred EEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeecccccccc
Q 035998 817 YSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLIL 896 (1020)
Q Consensus 817 ~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~ 896 (1020)
|||+++++|.+++... ..+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||++....
T Consensus 90 ~e~~~~~~L~~~l~~~----~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~ 162 (276)
T 2h6d_A 90 MEYVSGGELFDYICKH----GRVEEMEARRLFQQILSAVDYCHRH---MVVHRDLKPENVLLDAHMNAKIADFGLSNMMS 162 (276)
T ss_dssp EECCCSCBHHHHHHHH----CSCCHHHHHHHHHHHHHHHHHHHHH---CSSCCCCCGGGEEECTTSCEEECCCCGGGCCC
T ss_pred EeccCCCcHHHHHhcc----CCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChhhEEECCCCCEEEeecccccccC
Confidence 9999999999999765 4589999999999999999999999 99999999999999999999999999998763
Q ss_pred CCCCcccccccccccCccCccccCCCCC-CchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhccccccc
Q 035998 897 SPYDTHVTTDLVGTLGYIPPEYGQASVA-TYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVL 975 (1020)
Q Consensus 897 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 975 (1020)
.. .......+++.|+|||.+.+..+ +.++||||+|+++|+|++|+.||..... .. .......... .
T Consensus 163 ~~---~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~---~~---~~~~~~~~~~--~-- 229 (276)
T 2h6d_A 163 DG---EFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHV---PT---LFKKIRGGVF--Y-- 229 (276)
T ss_dssp C----------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSSH---HH---HHHHHHHCCC--C--
T ss_pred CC---cceecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCcH---HH---HHHHhhcCcc--c--
Confidence 32 22234568999999999887765 6899999999999999999999964321 11 1111111110 0
Q ss_pred CccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 976 DPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 976 d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
.+ . .....+.+++.+||+.||.+|||++|+++
T Consensus 230 ~~---~----~~~~~l~~li~~~l~~~p~~Rps~~~~l~ 261 (276)
T 2h6d_A 230 IP---E----YLNRSVATLLMHMLQVDPLKRATIKDIRE 261 (276)
T ss_dssp CC---T----TSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred Cc---h----hcCHHHHHHHHHHccCChhhCCCHHHHHh
Confidence 01 0 11235789999999999999999999997
No 225
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=100.00 E-value=1e-36 Score=334.17 Aligned_cols=246 Identities=24% Similarity=0.297 Sum_probs=199.1
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc--hhhHHHHHHHHHHHHHc-CCCccceEeeEEeccCceEEE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC--GQMEREFRAEVEALSRA-QHPNLVHLQGYCMHKNDRLLI 816 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv 816 (1020)
.++|++.+.||+|+||.||+|+.. +++.||||++.... ......+.+|+..+.++ +||||+++++++.+.+..++|
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~lv 89 (289)
T 1x8b_A 10 TTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLIQ 89 (289)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEEE
T ss_pred cchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEE
Confidence 357899999999999999999875 78999999987643 33456788999999999 999999999999999999999
Q ss_pred EEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCC---------------
Q 035998 817 YSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGN--------------- 881 (1020)
Q Consensus 817 ~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~--------------- 881 (1020)
|||+++++|.+++.........+++..++.++.|++.||+|||++ +|+||||||+||+++.+
T Consensus 90 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~ 166 (289)
T 1x8b_A 90 NEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSM---SLVHMDIKPSNIFISRTSIPNAASEEGDEDDW 166 (289)
T ss_dssp EECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEC-----------------
T ss_pred EEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhC---CEeecCCCHHHEEEcCCCCCcccccccccccc
Confidence 999999999999987543345689999999999999999999999 99999999999999844
Q ss_pred ----CCeEEeeccccccccCCCCcccccccccccCccCccccCCC-CCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcc
Q 035998 882 ----FGAHLADFGLARLILSPYDTHVTTDLVGTLGYIPPEYGQAS-VATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSR 956 (1020)
Q Consensus 882 ----~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~ 956 (1020)
..+|++|||.++..... ....||+.|+|||++.+. .++.++||||+|+++|||++|.+|+...
T Consensus 167 ~~~~~~~kl~Dfg~~~~~~~~------~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~------ 234 (289)
T 1x8b_A 167 ASNKVMFKIGDLGHVTRISSP------QVEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNG------ 234 (289)
T ss_dssp ---CCCEEECCCTTCEETTCS------CCCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSS------
T ss_pred cCCceEEEEcccccccccCCc------cccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcch------
Confidence 47999999999876432 223589999999998766 6678999999999999999998876421
Q ss_pred cHHHHHHHHHhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 957 DLISWVIRMRQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 957 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
+... .... ..... .... ....+.+++.+||+.||++|||++|+++
T Consensus 235 ~~~~---~~~~-~~~~~-----~~~~----~~~~~~~li~~~l~~dp~~Rps~~~ll~ 279 (289)
T 1x8b_A 235 DQWH---EIRQ-GRLPR-----IPQV----LSQEFTELLKVMIHPDPERRPSAMALVK 279 (289)
T ss_dssp HHHH---HHHT-TCCCC-----CSSC----CCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred hHHH---HHHc-CCCCC-----CCcc----cCHHHHHHHHHHhCCCcccCCCHHHHhh
Confidence 1111 1111 11111 1111 1236889999999999999999999986
No 226
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=100.00 E-value=3.5e-36 Score=331.11 Aligned_cols=252 Identities=23% Similarity=0.365 Sum_probs=198.6
Q ss_pred CCCcCCeeeccCCeEEEEEEe-CCCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEEEecc
Q 035998 743 NFDQANIIGCGGFGLVYRATL-PDGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIYSFME 821 (1020)
Q Consensus 743 ~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~ 821 (1020)
+|....+||+|+||.||+|.. .+++.||||.+........+.+.+|+.+++.++||||+++++++.+.+..++||||++
T Consensus 23 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~ 102 (295)
T 2clq_A 23 ENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQVP 102 (295)
T ss_dssp TTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCS
T ss_pred CCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEeCC
Confidence 455567999999999999986 4688999999987655556789999999999999999999999999999999999999
Q ss_pred CCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcC-CCCeEEeeccccccccCCCC
Q 035998 822 NGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDG-NFGAHLADFGLARLILSPYD 900 (1020)
Q Consensus 822 ~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~-~~~~kl~Dfg~~~~~~~~~~ 900 (1020)
+++|.+++.... ....+++..+..++.|++.||+|||+. +|+||||||+||+++. ++.+||+|||+++.....
T Consensus 103 ~~~L~~~l~~~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~-- 176 (295)
T 2clq_A 103 GGSLSALLRSKW-GPLKDNEQTIGFYTKQILEGLKYLHDN---QIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGI-- 176 (295)
T ss_dssp EEEHHHHHHHTT-CCCTTCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTCCEEECCTTTCEESCC---
T ss_pred CCCHHHHHHhhc-cCCCccHHHHHHHHHHHHHHHHHHHhC---CEEccCCChhhEEEECCCCCEEEeecccccccCCC--
Confidence 999999998642 334567899999999999999999999 9999999999999987 899999999999876432
Q ss_pred cccccccccccCccCccccCCC--CCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccccccCcc
Q 035998 901 THVTTDLVGTLGYIPPEYGQAS--VATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVLDPF 978 (1020)
Q Consensus 901 ~~~~~~~~gt~~y~aPE~~~~~--~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 978 (1020)
........|++.|+|||++.+. .++.++||||||+++|||++|+.||....... ... . ....... .+.
T Consensus 177 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~--~~~-~--~~~~~~~-----~~~ 246 (295)
T 2clq_A 177 NPCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQ--AAM-F--KVGMFKV-----HPE 246 (295)
T ss_dssp ----CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHH--HHH-H--HHHHHCC-----CCC
T ss_pred CCcccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchh--HHH-H--hhccccc-----ccc
Confidence 1223345789999999988654 37899999999999999999999996432211 111 1 1111110 111
Q ss_pred ccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 979 IYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 979 ~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
... .....+.+++.+||+.||++||+++|+++
T Consensus 247 ~~~----~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 278 (295)
T 2clq_A 247 IPE----SMSAEAKAFILKCFEPDPDKRACANDLLV 278 (295)
T ss_dssp CCT----TSCHHHHHHHHHTTCSSTTTSCCHHHHHT
T ss_pred ccc----cCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 111 12236789999999999999999999986
No 227
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=100.00 E-value=1e-37 Score=355.72 Aligned_cols=247 Identities=18% Similarity=0.204 Sum_probs=191.3
Q ss_pred ccCCCcCCeeeccCCeEEEEEEe-CCCCEEEEEEecCC---chhhHHHHHHHHH---HHHHcCCCccceEe-------eE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATL-PDGRNVAIKRLSGD---CGQMEREFRAEVE---ALSRAQHPNLVHLQ-------GY 806 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~---~~~~~~~~~~E~~---~l~~l~h~niv~l~-------~~ 806 (1020)
.++|++.+.||+|+||.||+|+. .+|+.||||++... .....+.+.+|++ .+++++|||||+++ ++
T Consensus 72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~ 151 (377)
T 3byv_A 72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL 151 (377)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence 46789999999999999999996 46999999998743 2344577899995 45555899999998 66
Q ss_pred EeccC-----------------ceEEEEEeccCCChhhhhhhcCC---CCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCe
Q 035998 807 CMHKN-----------------DRLLIYSFMENGSLDYWLHEKLD---GPSSLDWDSRLHIAQGAARGLAYLHQSCEPHI 866 (1020)
Q Consensus 807 ~~~~~-----------------~~~lv~e~~~~g~L~~~l~~~~~---~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~i 866 (1020)
+.+.+ ..++||||+ +|+|.+++..... ....+++..++.++.||+.||+|||++ +|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~i 227 (377)
T 3byv_A 152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY---GL 227 (377)
T ss_dssp EECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHT---TE
T ss_pred hhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhC---Ce
Confidence 65543 278999999 6799999986411 112344688889999999999999999 99
Q ss_pred EecCCCCCCEEEcCCCCeEEeeccccccccCCCCcccccccccccCccCccccCCC-----------CCCchhhHHHHHH
Q 035998 867 LHRDIKSSNILLDGNFGAHLADFGLARLILSPYDTHVTTDLVGTLGYIPPEYGQAS-----------VATYKGDVYSFGV 935 (1020)
Q Consensus 867 vH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----------~~~~~~DvwSlGv 935 (1020)
+||||||+||+++.++.+||+|||+++.... ......| +.|+|||++.+. .++.++|||||||
T Consensus 228 vHrDikp~NIll~~~~~~kL~DFG~a~~~~~-----~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~ 301 (377)
T 3byv_A 228 VHTYLRPVDIVLDQRGGVFLTGFEHLVRDGA-----RVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGL 301 (377)
T ss_dssp ECSCCCGGGEEECTTCCEEECCGGGCEETTC-----EEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHH
T ss_pred ecCCCCHHHEEEcCCCCEEEEechhheecCC-----cccCCCC-cCccChhhhcccccccccccccccCChhhhHHHHHH
Confidence 9999999999999999999999999986421 2334567 999999998877 8999999999999
Q ss_pred HHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH-
Q 035998 936 VLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS- 1014 (1020)
Q Consensus 936 il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~- 1014 (1020)
++|||++|+.||...........+ ... ... ....+.+++.+||+.||++||++.|+++
T Consensus 302 il~elltg~~Pf~~~~~~~~~~~~---------------~~~--~~~----~~~~~~~li~~~L~~dp~~Rpt~~e~l~h 360 (377)
T 3byv_A 302 VIYWIWCADLPITKDAALGGSEWI---------------FRS--CKN----IPQPVRALLEGFLRYPKEDRLLPLQAMET 360 (377)
T ss_dssp HHHHHHHSSCCC------CCSGGG---------------GSS--CCC----CCHHHHHHHHHHTCSSGGGCCCHHHHHTS
T ss_pred HHHHHHHCCCCCcccccccchhhh---------------hhh--ccC----CCHHHHHHHHHHcCCCchhCCCHHHHhhC
Confidence 999999999999654322211110 000 011 1235889999999999999999999986
Q ss_pred -HHHh
Q 035998 1015 -WLDS 1018 (1020)
Q Consensus 1015 -~L~~ 1018 (1020)
++++
T Consensus 361 p~f~~ 365 (377)
T 3byv_A 361 PEYEQ 365 (377)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 5443
No 228
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=100.00 E-value=5.2e-37 Score=361.91 Aligned_cols=249 Identities=24% Similarity=0.353 Sum_probs=200.3
Q ss_pred cCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc--hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEEE
Q 035998 742 NNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC--GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIYS 818 (1020)
Q Consensus 742 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 818 (1020)
++|++.+.||+|+||.||+|+.. +++.||||++.... ......+.+|++++++++||||+++++++.+....++|||
T Consensus 22 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 101 (486)
T 3mwu_A 22 ERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVGE 101 (486)
T ss_dssp HHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred cceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEEEE
Confidence 46999999999999999999875 78999999986432 2235678899999999999999999999999999999999
Q ss_pred eccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEc---CCCCeEEeeccccccc
Q 035998 819 FMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLD---GNFGAHLADFGLARLI 895 (1020)
Q Consensus 819 ~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~---~~~~~kl~Dfg~~~~~ 895 (1020)
|+++|+|.+++... ..+++..+..++.|++.||+|||++ +|+||||||+||+++ .++.+||+|||+++..
T Consensus 102 ~~~~~~L~~~~~~~----~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~ 174 (486)
T 3mwu_A 102 LYTGGELFDEIIKR----KRFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKDCDIKIIDFGLSTCF 174 (486)
T ss_dssp CCCSCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEESSSSTTCCEEECSCSCTTTB
T ss_pred cCCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCCCCEEEEECCcCeEC
Confidence 99999999888765 4689999999999999999999999 999999999999995 5667999999999876
Q ss_pred cCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhccccccc
Q 035998 896 LSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVL 975 (1020)
Q Consensus 896 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 975 (1020)
... .......||+.|+|||++.+ .++.++||||+||++|+|++|+.||..... .+.. ..+.......
T Consensus 175 ~~~---~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~---~~~~---~~i~~~~~~~--- 241 (486)
T 3mwu_A 175 QQN---TKMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNE---YDIL---KRVETGKYAF--- 241 (486)
T ss_dssp CCC-------CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHH---HHHHHTCCCS---
T ss_pred CCC---CccCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCCCCH---HHHH---HHHHhCCCCC---
Confidence 432 22344679999999999876 589999999999999999999999975322 1111 1221111100
Q ss_pred CccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 976 DPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 976 d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
+.... ......+.+++.+||+.||.+|||+.|+++
T Consensus 242 ~~~~~----~~~s~~~~~li~~~L~~dp~~R~t~~~~l~ 276 (486)
T 3mwu_A 242 DLPQW----RTISDDAKDLIRKMLTFHPSLRITATQCLE 276 (486)
T ss_dssp CSGGG----GGSCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred CCccc----CCCCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 00001 111235789999999999999999999997
No 229
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=100.00 E-value=5.4e-37 Score=346.49 Aligned_cols=263 Identities=25% Similarity=0.338 Sum_probs=199.3
Q ss_pred cCCCcCCeeeccCCeEEEEEEe-CCCCEEEEEEecCCch--hhHHHHHHHHHHHHHcCCCccceEeeEEecc--------
Q 035998 742 NNFDQANIIGCGGFGLVYRATL-PDGRNVAIKRLSGDCG--QMEREFRAEVEALSRAQHPNLVHLQGYCMHK-------- 810 (1020)
Q Consensus 742 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-------- 810 (1020)
++|++.+.||+|+||.||+|+. .+|+.||||++..... .....+.+|++++++++||||+++++++...
T Consensus 17 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 96 (351)
T 3mi9_A 17 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCK 96 (351)
T ss_dssp GGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC--------
T ss_pred cceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccCC
Confidence 5799999999999999999987 4789999999865432 2235678999999999999999999999873
Q ss_pred CceEEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeecc
Q 035998 811 NDRLLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFG 890 (1020)
Q Consensus 811 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg 890 (1020)
+..++||||+++ ++...+... ...+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||
T Consensus 97 ~~~~lv~e~~~~-~l~~~l~~~---~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg 169 (351)
T 3mi9_A 97 GSIYLVFDFCEH-DLAGLLSNV---LVKFTLSEIKRVMQMLLNGLYYIHRN---KILHRDMKAANVLITRDGVLKLADFG 169 (351)
T ss_dssp CEEEEEEECCSE-EHHHHHHCT---TSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCT
T ss_pred ceEEEEEeccCC-CHHHHHhhc---cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCHHHEEEcCCCCEEEccch
Confidence 457899999986 666666543 24589999999999999999999999 99999999999999999999999999
Q ss_pred ccccccCCCC--cccccccccccCccCccccCC-CCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHh
Q 035998 891 LARLILSPYD--THVTTDLVGTLGYIPPEYGQA-SVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQ 967 (1020)
Q Consensus 891 ~~~~~~~~~~--~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~ 967 (1020)
+++....... ........||+.|+|||++.+ ..++.++||||+||++|||++|+.||...... ...........
T Consensus 170 ~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~---~~~~~i~~~~~ 246 (351)
T 3mi9_A 170 LARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQ---HQLALISQLCG 246 (351)
T ss_dssp TCEECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH---HHHHHHHHHHC
T ss_pred hcccccccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCChH---HHHHHHHHHhC
Confidence 9987643221 122344678999999998876 56899999999999999999999999753321 22222222111
Q ss_pred hcccc---cccCcccc--------CccC-HHH------HHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 968 ENRES---EVLDPFIY--------DKQH-DKE------MLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 968 ~~~~~---~~~d~~~~--------~~~~-~~~------~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
..... ........ .... .+. ...+.+++.+||+.||++|||++|+++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 311 (351)
T 3mi9_A 247 SITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALN 311 (351)
T ss_dssp CCCTTTSTTGGGCGGGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred CCChhhccccccchhhcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhC
Confidence 11100 00000000 0000 011 234789999999999999999999986
No 230
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=100.00 E-value=4.3e-37 Score=348.95 Aligned_cols=269 Identities=22% Similarity=0.273 Sum_probs=199.1
Q ss_pred cHHHHHHhccCCCcCCeeeccCCeEEEEEEeCCCCEEEEEEecCCch-----------hhHHHHHHHHHHHHHcCCCccc
Q 035998 733 SIDDILESTNNFDQANIIGCGGFGLVYRATLPDGRNVAIKRLSGDCG-----------QMEREFRAEVEALSRAQHPNLV 801 (1020)
Q Consensus 733 ~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-----------~~~~~~~~E~~~l~~l~h~niv 801 (1020)
.+.++....++|++.+.||+|+||.||+|...+|+.||||++..... ...+.+.+|++++++++||||+
T Consensus 13 ~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv 92 (362)
T 3pg1_A 13 LIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNIL 92 (362)
T ss_dssp HHHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred HHHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCcc
Confidence 46677888999999999999999999999988899999999854321 1236789999999999999999
Q ss_pred eEeeEEecc-----CceEEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCE
Q 035998 802 HLQGYCMHK-----NDRLLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNI 876 (1020)
Q Consensus 802 ~l~~~~~~~-----~~~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NI 876 (1020)
++++++... ...++||||++ |+|.+++... ...+++..+..++.|++.||+|||+. +|+||||||+||
T Consensus 93 ~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~---~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~NI 165 (362)
T 3pg1_A 93 GLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQ---RIVISPQHIQYFMYHILLGLHVLHEA---GVVHRDLHPGNI 165 (362)
T ss_dssp CCSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCT---TSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGE
T ss_pred ceeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhc---ccCCCHHHHHHHHHHHHHHHHHHHHC---cCEecCCChHHE
Confidence 999998543 35799999998 5787777643 34689999999999999999999999 999999999999
Q ss_pred EEcCCCCeEEeeccccccccCCCCcccccccccccCccCccccCC-CCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCc
Q 035998 877 LLDGNFGAHLADFGLARLILSPYDTHVTTDLVGTLGYIPPEYGQA-SVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGS 955 (1020)
Q Consensus 877 ll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~ 955 (1020)
+++.++.+||+|||+++..... .......||+.|+|||++.+ ..++.++||||+||++|+|++|+.||......
T Consensus 166 l~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~-- 240 (362)
T 3pg1_A 166 LLADNNDITICDFNLAREDTAD---ANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTFY-- 240 (362)
T ss_dssp EECTTCCEEECCTTC------------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH--
T ss_pred EEcCCCCEEEEecCcccccccc---cccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCCCHH--
Confidence 9999999999999999754322 22334578899999998876 77899999999999999999999999753321
Q ss_pred ccHHHHHHHHHhhcccc---------------ccc---CccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 956 RDLISWVIRMRQENRES---------------EVL---DPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 956 ~~~~~~~~~~~~~~~~~---------------~~~---d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
................ ... .+.......+.....+.+++.+||+.||++|||++|+++
T Consensus 241 -~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 316 (362)
T 3pg1_A 241 -NQLNKIVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQALR 316 (362)
T ss_dssp -HHHHHHHHHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred -HHHHHHHHHcCCCChHHhhhccchhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCChhhCCCHHHHHc
Confidence 1111111110000000 000 000000111122345889999999999999999999987
No 231
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=100.00 E-value=1.1e-36 Score=334.31 Aligned_cols=254 Identities=23% Similarity=0.382 Sum_probs=188.3
Q ss_pred ccCCCcCCeeeccCCeEEEEEEe-CCCCEEEEEEecCCch-h-hHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATL-PDGRNVAIKRLSGDCG-Q-MEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIY 817 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~-~-~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 817 (1020)
.++|++.+.||+|+||.||+|+. .+++.||||++..... . ..+.+.++...++.++||||+++++++.+.+..++||
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~ 85 (290)
T 3fme_A 6 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICM 85 (290)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEEE
T ss_pred HHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEEE
Confidence 46799999999999999999986 4788999999976532 2 2233445555577789999999999999999999999
Q ss_pred EeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccC
Q 035998 818 SFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILS 897 (1020)
Q Consensus 818 e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~ 897 (1020)
||+++ +|.+++.........+++..++.++.|++.||+|||+++ +|+||||||+||+++.++.+||+|||+++....
T Consensus 86 e~~~~-~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~--~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~ 162 (290)
T 3fme_A 86 ELMDT-SLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKL--SVIHRDVKPSNVLINALGQVKMCDFGISGYLVD 162 (290)
T ss_dssp ECCSE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHS--CCCCCCCSGGGCEECTTCCEEBCCC--------
T ss_pred ehhcc-chHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcC--CeecCCCCHHHEEECCCCCEEEeecCCcccccc
Confidence 99975 888888765555568999999999999999999999853 899999999999999999999999999987643
Q ss_pred CCCcccccccccccCccCcccc----CCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhccccc
Q 035998 898 PYDTHVTTDLVGTLGYIPPEYG----QASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESE 973 (1020)
Q Consensus 898 ~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 973 (1020)
. .......||+.|+|||++ .+..++.++||||+|+++|||++|+.||..... . ............ ..
T Consensus 163 ~---~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~----~-~~~~~~~~~~~~-~~ 233 (290)
T 3fme_A 163 D---VAKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGT----P-FQQLKQVVEEPS-PQ 233 (290)
T ss_dssp ----------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSC----H-HHHHHHHHHSCC-CC
T ss_pred c---ccccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCc----h-HHHHHHHhccCC-CC
Confidence 2 222334789999999985 566789999999999999999999999964321 1 111111111111 11
Q ss_pred ccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 974 VLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 974 ~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
... . .....+.+++.+||+.||++|||++|+++
T Consensus 234 ~~~----~----~~~~~~~~li~~~l~~~p~~Rpt~~e~l~ 266 (290)
T 3fme_A 234 LPA----D----KFSAEFVDFTSQCLKKNSKERPTYPELMQ 266 (290)
T ss_dssp CCT----T----TSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred ccc----c----cCCHHHHHHHHHHhhcChhhCcCHHHHHh
Confidence 000 1 11235889999999999999999999987
No 232
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=100.00 E-value=4.2e-37 Score=343.43 Aligned_cols=255 Identities=22% Similarity=0.318 Sum_probs=200.7
Q ss_pred HhccCCCcC-CeeeccCCeEEEEEEeC-CCCEEEEEEecCCc--hhhHHHHHHHHHHHHHc-CCCccceEeeEEeccCce
Q 035998 739 ESTNNFDQA-NIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC--GQMEREFRAEVEALSRA-QHPNLVHLQGYCMHKNDR 813 (1020)
Q Consensus 739 ~~~~~~~~~-~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~ 813 (1020)
...++|.+. +.||+|+||.||+|+.. +++.||||++.... ......+.+|+.+++++ +||||+++++++.+.+..
T Consensus 25 ~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~~~ 104 (327)
T 3lm5_A 25 NFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENTSEI 104 (327)
T ss_dssp HHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEE
T ss_pred hhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCCeE
Confidence 334567777 88999999999999865 68999999987643 22356788999999999 569999999999999999
Q ss_pred EEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcC---CCCeEEeecc
Q 035998 814 LLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDG---NFGAHLADFG 890 (1020)
Q Consensus 814 ~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~---~~~~kl~Dfg 890 (1020)
++||||+++|+|.+++... ....+++..++.++.|++.||+|||++ +|+||||||+||+++. ++.+||+|||
T Consensus 105 ~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~i~~ql~~~L~~LH~~---givH~Dikp~NIl~~~~~~~~~~kL~Dfg 179 (327)
T 3lm5_A 105 ILILEYAAGGEIFSLCLPE--LAEMVSENDVIRLIKQILEGVYYLHQN---NIVHLDLKPQNILLSSIYPLGDIKIVDFG 179 (327)
T ss_dssp EEEEECCTTEEGGGGGSSC--C-CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESCBTTBCCEEECCGG
T ss_pred EEEEEecCCCcHHHHHHHh--cccCCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCChHHEEEecCCCCCcEEEeeCc
Confidence 9999999999999988653 235689999999999999999999999 9999999999999987 7899999999
Q ss_pred ccccccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcc
Q 035998 891 LARLILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENR 970 (1020)
Q Consensus 891 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~ 970 (1020)
+++..... .......||+.|+|||++.+..++.++||||+|+++|||++|+.||...... .. .........
T Consensus 180 ~a~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~---~~---~~~i~~~~~ 250 (327)
T 3lm5_A 180 MSRKIGHA---CELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQ---ET---YLNISQVNV 250 (327)
T ss_dssp GCEEC------------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH---HH---HHHHHHTCC
T ss_pred cccccCCc---cccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCch---HH---HHHHHhccc
Confidence 99876432 2223457899999999999999999999999999999999999999643221 11 111111110
Q ss_pred cccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 971 ESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 971 ~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
. ..+ .........+.+++.+||+.||++|||++|+++
T Consensus 251 --~-~~~----~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~ll~ 287 (327)
T 3lm5_A 251 --D-YSE----ETFSSVSQLATDFIQSLLVKNPEKRPTAEICLS 287 (327)
T ss_dssp --C-CCT----TTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred --c-cCc----hhhcccCHHHHHHHHHHcCCChhhCcCHHHHhC
Confidence 0 000 001112245889999999999999999999986
No 233
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=100.00 E-value=2e-36 Score=334.32 Aligned_cols=252 Identities=25% Similarity=0.447 Sum_probs=198.9
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEEEe
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIYSF 819 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 819 (1020)
.++|++.+.||+|+||.||+|+.. +++.||+|++........+.+.+|++++++++||||+++++++...+..++||||
T Consensus 18 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 97 (302)
T 2j7t_A 18 NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIEF 97 (302)
T ss_dssp GGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEEC
T ss_pred ccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEEe
Confidence 467999999999999999999975 5899999999766555567889999999999999999999999999999999999
Q ss_pred ccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccCCC
Q 035998 820 MENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILSPY 899 (1020)
Q Consensus 820 ~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~ 899 (1020)
+++++|.+++... ...+++..+..++.|++.||+|||+. +++||||||+||+++.++.+||+|||++......
T Consensus 98 ~~~~~l~~~~~~~---~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~- 170 (302)
T 2j7t_A 98 CPGGAVDAIMLEL---DRGLTEPQIQVVCRQMLEALNFLHSK---RIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKT- 170 (302)
T ss_dssp CTTEEHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTSCEEECCCHHHHHHHHH-
T ss_pred CCCCcHHHHHHhh---ccCCCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHHHEEECCCCCEEEEECCCCcccccc-
Confidence 9999999998764 24589999999999999999999999 9999999999999999999999999997643211
Q ss_pred CcccccccccccCccCcccc-----CCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccccc
Q 035998 900 DTHVTTDLVGTLGYIPPEYG-----QASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEV 974 (1020)
Q Consensus 900 ~~~~~~~~~gt~~y~aPE~~-----~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 974 (1020)
........|++.|+|||++ .+..++.++||||+|+++|+|++|+.||..... ............ ...
T Consensus 171 -~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~------~~~~~~~~~~~~-~~~ 242 (302)
T 2j7t_A 171 -LQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNP------MRVLLKIAKSDP-PTL 242 (302)
T ss_dssp -HHC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCH------HHHHHHHHHSCC-CCC
T ss_pred -ccccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCH------HHHHHHHhccCC-ccc
Confidence 1112335689999999987 467889999999999999999999999975322 111111111111 111
Q ss_pred cCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 975 LDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 975 ~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
..+ ......+.+++.+||+.||++|||++++++
T Consensus 243 ~~~-------~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 275 (302)
T 2j7t_A 243 LTP-------SKWSVEFRDFLKIALDKNPETRPSAAQLLE 275 (302)
T ss_dssp SSG-------GGSCHHHHHHHHHHSCSCTTTSCCHHHHTT
T ss_pred CCc-------cccCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 111 111235889999999999999999999986
No 234
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=100.00 E-value=7.2e-37 Score=361.27 Aligned_cols=249 Identities=23% Similarity=0.348 Sum_probs=197.4
Q ss_pred cCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc--hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEEE
Q 035998 742 NNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC--GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIYS 818 (1020)
Q Consensus 742 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 818 (1020)
++|++.+.||+|+||.||+|+.. ++..||||++.... ......+.+|+++++.++||||+++++++.+....++|||
T Consensus 37 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 116 (494)
T 3lij_A 37 EMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVME 116 (494)
T ss_dssp HHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred cCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEe
Confidence 46999999999999999999875 68899999987543 2234678899999999999999999999999999999999
Q ss_pred eccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcC---CCCeEEeeccccccc
Q 035998 819 FMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDG---NFGAHLADFGLARLI 895 (1020)
Q Consensus 819 ~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~---~~~~kl~Dfg~~~~~ 895 (1020)
|+++|+|.+++... ..+++..+..++.||+.||+|||+. +|+||||||+||+++. ++.+||+|||+++..
T Consensus 117 ~~~~g~L~~~~~~~----~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~ 189 (494)
T 3lij_A 117 CYKGGELFDEIIHR----MKFNEVDAAVIIKQVLSGVTYLHKH---NIVHRDLKPENLLLESKEKDALIKIVDFGLSAVF 189 (494)
T ss_dssp CCCSCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTCCEEECCCTTCEEC
T ss_pred cCCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCChhhEEEeCCCCCCcEEEEECCCCeEC
Confidence 99999999888765 4689999999999999999999999 9999999999999976 455999999999876
Q ss_pred cCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhccccccc
Q 035998 896 LSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVL 975 (1020)
Q Consensus 896 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 975 (1020)
... .......||+.|+|||++. +.++.++||||+||++|+|++|+.||...... .. ...+...... .
T Consensus 190 ~~~---~~~~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~---~~---~~~i~~~~~~---~ 256 (494)
T 3lij_A 190 ENQ---KKMKERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYPPFGGQTDQ---EI---LRKVEKGKYT---F 256 (494)
T ss_dssp BTT---BCBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH---HH---HHHHHHTCCC---C
T ss_pred CCC---ccccccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCCCCCCCCHH---HH---HHHHHhCCCC---C
Confidence 432 2234467999999999876 46899999999999999999999999753321 11 1112111110 1
Q ss_pred CccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 976 DPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 976 d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
+...+.. ....+.+++.+||+.||.+|||++|+++
T Consensus 257 ~~~~~~~----~s~~~~~li~~~L~~dp~~R~s~~e~l~ 291 (494)
T 3lij_A 257 DSPEWKN----VSEGAKDLIKQMLQFDSQRRISAQQALE 291 (494)
T ss_dssp CSGGGTT----SCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred Cchhccc----CCHHHHHHHHHHCCCChhhCccHHHHhc
Confidence 1111111 1235789999999999999999999986
No 235
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=100.00 E-value=1.2e-35 Score=328.56 Aligned_cols=251 Identities=20% Similarity=0.258 Sum_probs=198.3
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc----hhhHHHHHHHHHHHHHcCCCccceEeeEEe--ccCce
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC----GQMEREFRAEVEALSRAQHPNLVHLQGYCM--HKNDR 813 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h~niv~l~~~~~--~~~~~ 813 (1020)
.++|++.+.||+|+||.||+|... +++.||+|++.... ....+.+.+|++++++++||||+++++++. +....
T Consensus 4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 83 (305)
T 2wtk_C 4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKM 83 (305)
T ss_dssp -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CE
T ss_pred ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeE
Confidence 468999999999999999999874 68899999997542 223567899999999999999999999984 45678
Q ss_pred EEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccc
Q 035998 814 LLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLAR 893 (1020)
Q Consensus 814 ~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~ 893 (1020)
++||||++++ +.+++.... ...+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||.++
T Consensus 84 ~lv~e~~~~~-l~~~~~~~~--~~~~~~~~~~~~~~qi~~al~~LH~~---~i~H~dlkp~NIl~~~~~~~kl~dfg~~~ 157 (305)
T 2wtk_C 84 YMVMEYCVCG-MQEMLDSVP--EKRFPVCQAHGYFCQLIDGLEYLHSQ---GIVHKDIKPGNLLLTTGGTLKISALGVAE 157 (305)
T ss_dssp EEEEECCSEE-HHHHHHHST--TCSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCE
T ss_pred EEEehhccCC-HHHHHHhCc--ccccCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCcccEEEcCCCcEEeecccccc
Confidence 9999999887 666666542 34689999999999999999999999 99999999999999999999999999998
Q ss_pred cccCCCCcccccccccccCccCccccCCCC--CCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhccc
Q 035998 894 LILSPYDTHVTTDLVGTLGYIPPEYGQASV--ATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRE 971 (1020)
Q Consensus 894 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~ 971 (1020)
...............|++.|+|||+..+.. ++.++||||+|+++|||++|+.||..... ............
T Consensus 158 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~------~~~~~~i~~~~~- 230 (305)
T 2wtk_C 158 ALHPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDNI------YKLFENIGKGSY- 230 (305)
T ss_dssp ECCTTCSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSSH------HHHHHHHHHCCC-
T ss_pred ccCccccccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCchH------HHHHHHHhcCCC-
Confidence 765433333344567899999999887644 47899999999999999999999974321 111111111110
Q ss_pred ccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 972 SEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 972 ~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
. ... .....+.+++.+||+.||.+||+++|+++
T Consensus 231 -~-----~~~----~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 263 (305)
T 2wtk_C 231 -A-----IPG----DCGPPLSDLLKGMLEYEPAKRFSIRQIRQ 263 (305)
T ss_dssp -C-----CCS----SSCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred -C-----CCC----ccCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 0 001 11235789999999999999999999996
No 236
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=100.00 E-value=1.2e-36 Score=360.48 Aligned_cols=250 Identities=25% Similarity=0.349 Sum_probs=200.0
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCch-------------hhHHHHHHHHHHHHHcCCCccceEeeE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCG-------------QMEREFRAEVEALSRAQHPNLVHLQGY 806 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~-------------~~~~~~~~E~~~l~~l~h~niv~l~~~ 806 (1020)
.++|++.+.||+|+||.||+|+.. +++.||||++..... ...+.+.+|++++++++||||++++++
T Consensus 35 ~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~ 114 (504)
T 3q5i_A 35 GESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDV 114 (504)
T ss_dssp GGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred ccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Confidence 468999999999999999999875 578999999875431 234678899999999999999999999
Q ss_pred EeccCceEEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCC---C
Q 035998 807 CMHKNDRLLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNF---G 883 (1020)
Q Consensus 807 ~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~---~ 883 (1020)
+.+....++||||+++|+|.+++... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++ .
T Consensus 115 ~~~~~~~~lv~e~~~gg~L~~~l~~~----~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~ 187 (504)
T 3q5i_A 115 FEDKKYFYLVTEFYEGGELFEQIINR----HKFDECDAANIMKQILSGICYLHKH---NIVHRDIKPENILLENKNSLLN 187 (504)
T ss_dssp EECSSEEEEEEECCTTCBHHHHHHHH----SCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESSTTCCSS
T ss_pred EEcCCEEEEEEecCCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCcHHHEEEecCCCCcc
Confidence 99999999999999999999988765 4689999999999999999999999 999999999999998776 6
Q ss_pred eEEeeccccccccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHH
Q 035998 884 AHLADFGLARLILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVI 963 (1020)
Q Consensus 884 ~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~ 963 (1020)
+||+|||+++..... .......||+.|+|||++. +.++.++||||+||++|+|++|..||...... .. ..
T Consensus 188 ~kl~Dfg~a~~~~~~---~~~~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~---~~---~~ 257 (504)
T 3q5i_A 188 IKIVDFGLSSFFSKD---YKLRDRLGTAYYIAPEVLK-KKYNEKCDVWSCGVIMYILLCGYPPFGGQNDQ---DI---IK 257 (504)
T ss_dssp EEECCCTTCEECCTT---SCBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH---HH---HH
T ss_pred EEEEECCCCEEcCCC---CccccccCCcCCCCHHHhc-cCCCchHHHHHHHHHHHHHHhCCCCCCCCCHH---HH---HH
Confidence 999999999876432 2234467999999999977 46899999999999999999999999753321 11 11
Q ss_pred HHHhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 964 RMRQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 964 ~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
.+...... .+...... ....+.+++.+||+.||.+|||++|+++
T Consensus 258 ~i~~~~~~---~~~~~~~~----~s~~~~~li~~~L~~dp~~R~t~~e~l~ 301 (504)
T 3q5i_A 258 KVEKGKYY---FDFNDWKN----ISDEAKELIKLMLTYDYNKRCTAEEALN 301 (504)
T ss_dssp HHHHCCCC---CCHHHHTT----SCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHHcCCCC---CCccccCC----CCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 12111110 01001111 1235889999999999999999999986
No 237
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=100.00 E-value=1.8e-36 Score=340.62 Aligned_cols=255 Identities=23% Similarity=0.405 Sum_probs=200.2
Q ss_pred hccCCCcCCeeeccCCeEEEEEEe-CCCCEEEEEEecCCc-hhhHHHHHHHHHH-HHHcCCCccceEeeEEeccCceEEE
Q 035998 740 STNNFDQANIIGCGGFGLVYRATL-PDGRNVAIKRLSGDC-GQMEREFRAEVEA-LSRAQHPNLVHLQGYCMHKNDRLLI 816 (1020)
Q Consensus 740 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~~-l~~l~h~niv~l~~~~~~~~~~~lv 816 (1020)
..++|++.+.||+|+||.||+|+. .+|+.||||++.... ......+..|... ++.++||||+++++++.+.+..++|
T Consensus 49 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~~~~~~~~~~~~~lv 128 (340)
T 3an0_A 49 KADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWIC 128 (340)
T ss_dssp CSSCEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCCCCHHHHHHHHHHHHHHTTCCCTTTCCEEEEEECSSCEEEE
T ss_pred ehhheeEeeEecccCCEEEEEEEEcCCCCEEEEEEeccccCcHHHHHHHHHHHHHHhhcCCCcEEEEeeEEEeCCcEEEE
Confidence 356899999999999999999986 478899999997653 2333455556555 6778999999999999999999999
Q ss_pred EEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeecccccccc
Q 035998 817 YSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLIL 896 (1020)
Q Consensus 817 ~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~ 896 (1020)
|||+++ +|.+++.........+++..++.++.||+.||+|||++. +|+||||||+||+++.++.+||+|||+++...
T Consensus 129 ~e~~~~-~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~--~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~ 205 (340)
T 3an0_A 129 MELMDT-SLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKL--SVIHRDVKPSNVLINALGQVKMCDFGISGYLV 205 (340)
T ss_dssp ECCCSE-EHHHHHHHHHHTSCCCCHHHHHHHHHHHHHHHHHHHHHT--CCCCCSCCSTTEEECSTTCEEECCCSHHHHHS
T ss_pred HHHhhC-cHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcC--CeecCCCCHHHEEECCCCCEEEeeCCCceecc
Confidence 999986 999988765444568999999999999999999999742 89999999999999999999999999998763
Q ss_pred CCCCcccccccccccCccCccccC----CCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccc
Q 035998 897 SPYDTHVTTDLVGTLGYIPPEYGQ----ASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRES 972 (1020)
Q Consensus 897 ~~~~~~~~~~~~gt~~y~aPE~~~----~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~ 972 (1020)
. ........||+.|+|||++. ...++.++|||||||++|||++|+.||...... ............ .
T Consensus 206 ~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~tg~~p~~~~~~~-----~~~~~~~~~~~~-~ 276 (340)
T 3an0_A 206 D---SVAKTIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTP-----FQQLKQVVEEPS-P 276 (340)
T ss_dssp C---HHHHHHSSCCCCCCCHHHHSCCTTCCSCCHHHHHHHHHHHHHHHHHTSCSSCCCSCH-----HHHHHHHHHSCC-C
T ss_pred c---ccccccCCCCccccCccccccccccCCCCchhhHHHHHHHHHHHHHCCCCCccccch-----HHHHHHHhcCCC-C
Confidence 2 22233457999999999864 447899999999999999999999999743211 111111111111 0
Q ss_pred cccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 973 EVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 973 ~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
... . ......+.+++.+||+.||++||+++|+++
T Consensus 277 ~~~-----~---~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 310 (340)
T 3an0_A 277 QLP-----A---DKFSAEFVDFTSQCLKKNSKERPTYPELMQ 310 (340)
T ss_dssp CCC-----G---GGSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred CCC-----c---ccCCHHHHHHHHHHccCCcccCcCHHHHhc
Confidence 000 0 011246889999999999999999999987
No 238
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=100.00 E-value=6.2e-37 Score=348.48 Aligned_cols=254 Identities=11% Similarity=0.042 Sum_probs=182.2
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCch---hhHHHHHHHHHHHHHc--CCCccceEe-------eEE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCG---QMEREFRAEVEALSRA--QHPNLVHLQ-------GYC 807 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l--~h~niv~l~-------~~~ 807 (1020)
..+|++.+.||+|+||.||+|++. +++.||||++..... ...+.+.+|+++++.+ +||||++++ +++
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~ 140 (371)
T 3q60_A 61 ERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAV 140 (371)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEE
T ss_pred ceeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehhe
Confidence 345889999999999999999965 788999999987542 3345677886655555 599987754 444
Q ss_pred ecc-----------------CceEEEEEeccCCChhhhhhhcCCCCCCCCHHHH------HHHHHHHHHHHHHhHhcCCC
Q 035998 808 MHK-----------------NDRLLIYSFMENGSLDYWLHEKLDGPSSLDWDSR------LHIAQGAARGLAYLHQSCEP 864 (1020)
Q Consensus 808 ~~~-----------------~~~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~------~~i~~~i~~~L~~LH~~~~~ 864 (1020)
... ...++||||++ |+|.+++.... ..+++..+ ..++.||+.||+|||++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~---~~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~--- 213 (371)
T 3q60_A 141 AVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLD---FVYVFRGDEGILALHILTAQLIRLAANLQSK--- 213 (371)
T ss_dssp EETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHH---HSCCCCHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred ecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhc---cccchhhhhhhhhHHHHHHHHHHHHHHHHHC---
Confidence 433 23799999999 89999998641 22344555 78889999999999999
Q ss_pred CeEecCCCCCCEEEcCCCCeEEeeccccccccCCCCcccccccccccCccCccccCC--CCCCchhhHHHHHHHHHHHHc
Q 035998 865 HILHRDIKSSNILLDGNFGAHLADFGLARLILSPYDTHVTTDLVGTLGYIPPEYGQA--SVATYKGDVYSFGVVLLELLT 942 (1020)
Q Consensus 865 ~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~DvwSlGvil~ellt 942 (1020)
+|+||||||+||+++.++.+||+|||+++.... ......+|+.|+|||++.+ ..++.++||||+||++|||++
T Consensus 214 ~ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~-----~~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~ellt 288 (371)
T 3q60_A 214 GLVHGHFTPDNLFIMPDGRLMLGDVSALWKVGT-----RGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWC 288 (371)
T ss_dssp TEEETTCSGGGEEECTTSCEEECCGGGEEETTC-----EEEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHH
T ss_pred CCccCcCCHHHEEECCCCCEEEEecceeeecCC-----CccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHh
Confidence 999999999999999999999999999987532 1223456799999999987 789999999999999999999
Q ss_pred CCCCCCCCCCCCcccHHHHHHHHHhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 943 GKRPMDMCKPKGSRDLISWVIRMRQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 943 g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
|+.||....+....... .......................+.+++.+||+.||++|||++|+++
T Consensus 289 g~~Pf~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 352 (371)
T 3q60_A 289 LFLPFGLVTPGIKGSWK--------RPSLRVPGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRRRLLPLEAME 352 (371)
T ss_dssp SSCSTTBCCTTCTTCCC--------BCCTTSCCCCSCCCTTSSCCCHHHHHHHHHHTCSSTTTCCCHHHHTT
T ss_pred CCCCCCCcCcccccchh--------hhhhhhccccccchhhccCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 99999865432211100 00000000000000111122346889999999999999999999986
No 239
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=100.00 E-value=3.8e-37 Score=363.25 Aligned_cols=249 Identities=25% Similarity=0.382 Sum_probs=203.1
Q ss_pred cCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc---hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEE
Q 035998 742 NNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC---GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIY 817 (1020)
Q Consensus 742 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 817 (1020)
++|++.+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|++++++++||||+++++++.+....++||
T Consensus 26 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 105 (484)
T 3nyv_A 26 DRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLVG 105 (484)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred CceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEE
Confidence 46999999999999999999875 78999999986542 234567899999999999999999999999999999999
Q ss_pred EeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEE---cCCCCeEEeecccccc
Q 035998 818 SFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILL---DGNFGAHLADFGLARL 894 (1020)
Q Consensus 818 e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll---~~~~~~kl~Dfg~~~~ 894 (1020)
||+.+|+|.+++... ..+++..++.++.|++.||+|||++ +|+||||||+||++ +.++.+||+|||+++.
T Consensus 106 e~~~~~~L~~~~~~~----~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~ 178 (484)
T 3nyv_A 106 EVYTGGELFDEIISR----KRFSEVDAARIIRQVLSGITYMHKN---KIVHRDLKPENLLLESKSKDANIRIIDFGLSTH 178 (484)
T ss_dssp CCCCSCBHHHHHHTC----SCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSTTCCEEECCTTHHHH
T ss_pred ecCCCCCHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEE
Confidence 999999999988754 4689999999999999999999999 99999999999999 5678999999999987
Q ss_pred ccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccccc
Q 035998 895 ILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEV 974 (1020)
Q Consensus 895 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 974 (1020)
.... .......||+.|+|||++.+ .++.++||||+||++|+|++|+.||..... .... ..+........
T Consensus 179 ~~~~---~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~---~~~~---~~i~~~~~~~~- 247 (484)
T 3nyv_A 179 FEAS---KKMKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGANE---YDIL---KKVEKGKYTFE- 247 (484)
T ss_dssp BCCC---CSHHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHH---HHHHHCCCCCC-
T ss_pred cccc---cccccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCCCCH---HHHH---HHHHcCCCCCC-
Confidence 6432 22344579999999998866 689999999999999999999999975322 1111 12211111100
Q ss_pred cCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 975 LDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 975 ~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
.+ .. ......+.+++.+||+.||.+|||++|+++
T Consensus 248 -~~-~~----~~~s~~~~~li~~~L~~dp~~R~s~~e~l~ 281 (484)
T 3nyv_A 248 -LP-QW----KKVSESAKDLIRKMLTYVPSMRISARDALD 281 (484)
T ss_dssp -SG-GG----GGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred -Cc-cc----ccCCHHHHHHHHHHCCCChhHCcCHHHHhh
Confidence 00 00 112235789999999999999999999987
No 240
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=100.00 E-value=4.1e-36 Score=336.31 Aligned_cols=261 Identities=19% Similarity=0.302 Sum_probs=201.0
Q ss_pred ccCCCcCCeeeccCCeEEEEEEe-CCCCEEEEEEecCCchhhHHHHHHHHHHHHHcC-CCccceEeeEEec--cCceEEE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATL-PDGRNVAIKRLSGDCGQMEREFRAEVEALSRAQ-HPNLVHLQGYCMH--KNDRLLI 816 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~--~~~~~lv 816 (1020)
.++|++.+.||+|+||.||+|+. .+++.||||++.... .+.+.+|++++++++ ||||+++++++.+ ....++|
T Consensus 35 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv 111 (330)
T 3nsz_A 35 QDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK---KKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALV 111 (330)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCC---HHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEE
T ss_pred CCceEEEEEecccCCeEEEEEEECCCCcEEEEEEecccc---hHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEE
Confidence 35799999999999999999985 578999999997543 467889999999997 9999999999987 5678999
Q ss_pred EEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCC-CeEEeeccccccc
Q 035998 817 YSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNF-GAHLADFGLARLI 895 (1020)
Q Consensus 817 ~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~-~~kl~Dfg~~~~~ 895 (1020)
|||+++++|.+++.. +++..+..++.|++.||+|||++ +|+||||||+||+++.++ .+||+|||+++..
T Consensus 112 ~e~~~~~~l~~~~~~-------~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~ 181 (330)
T 3nsz_A 112 FEHVNNTDFKQLYQT-------LTDYDIRFYMYEILKALDYCHSM---GIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFY 181 (330)
T ss_dssp EECCCCCCHHHHGGG-------CCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEEECCCTTCEEC
T ss_pred EeccCchhHHHHHHh-------CCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEEcCCCCEEEEEeCCCceEc
Confidence 999999999988753 68899999999999999999999 999999999999999776 8999999999876
Q ss_pred cCCCCcccccccccccCccCccccCC-CCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcc----
Q 035998 896 LSPYDTHVTTDLVGTLGYIPPEYGQA-SVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENR---- 970 (1020)
Q Consensus 896 ~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~---- 970 (1020)
.... ......|+..|+|||++.+ ..++.++||||+||++|||++|+.||..... ..+.............
T Consensus 182 ~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~--~~~~l~~~~~~~~~~~~~~~ 256 (330)
T 3nsz_A 182 HPGQ---EYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHD--NYDQLVRIAKVLGTEDLYDY 256 (330)
T ss_dssp CTTC---CCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSS--HHHHHHHHHHHHCHHHHHHH
T ss_pred CCCC---ccccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCc--hHHHHHHHHHhcCCchhhhH
Confidence 4322 2334578999999998876 6799999999999999999999999954322 1111111111000000
Q ss_pred ---cccccCc----------------cccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH--HHHhc
Q 035998 971 ---ESEVLDP----------------FIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS--WLDSI 1019 (1020)
Q Consensus 971 ---~~~~~d~----------------~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~--~L~~i 1019 (1020)
.....++ .............+.+++.+||+.||++|||++|+++ +|.++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~hp~f~~~ 326 (330)
T 3nsz_A 257 IDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTV 326 (330)
T ss_dssp HHHTTCCCCTHHHHHHCCCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHTSGGGTTC
T ss_pred HHHhccccccchhhhhhhccccchhhhccccccccCCHHHHHHHHHHhcCCcccCCCHHHHhcCccHhhh
Confidence 0000000 0000111112346889999999999999999999997 55443
No 241
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=100.00 E-value=2.1e-36 Score=332.22 Aligned_cols=257 Identities=24% Similarity=0.363 Sum_probs=196.2
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC--CCC--EEEEEEecCCc---hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCce
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP--DGR--NVAIKRLSGDC---GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDR 813 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~--~~~--~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 813 (1020)
.++|++.+.||+|+||.||+|++. +++ .||||++.... ....+.+.+|++++++++||||+++++++.+.. .
T Consensus 17 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~ 95 (291)
T 1u46_A 17 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-M 95 (291)
T ss_dssp GGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-C
T ss_pred hhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-c
Confidence 357899999999999999999853 333 68999987542 234567899999999999999999999988654 8
Q ss_pred EEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccc
Q 035998 814 LLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLAR 893 (1020)
Q Consensus 814 ~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~ 893 (1020)
++||||+++++|.+++... ...+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++
T Consensus 96 ~~v~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~ 169 (291)
T 1u46_A 96 KMVTELAPLGSLLDRLRKH---QGHFLLGTLSRYAVQVAEGMGYLESK---RFIHRDLAARNLLLATRDLVKIGDFGLMR 169 (291)
T ss_dssp EEEEECCTTCBHHHHHHHH---GGGSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEECCCTTCE
T ss_pred eeeEecccCCCHHHHHHhc---cCCcCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEEcCCCCEEEccccccc
Confidence 8999999999999999764 23588999999999999999999999 99999999999999999999999999998
Q ss_pred cccCCCCc-ccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHc-CCCCCCCCCCCCcccHHHHHHHHHhhccc
Q 035998 894 LILSPYDT-HVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLT-GKRPMDMCKPKGSRDLISWVIRMRQENRE 971 (1020)
Q Consensus 894 ~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~ 971 (1020)
........ .......++..|+|||+..+..++.++||||+|+++|||++ |+.||..... .............
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~------~~~~~~~~~~~~~ 243 (291)
T 1u46_A 170 ALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNG------SQILHKIDKEGER 243 (291)
T ss_dssp ECCC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCH------HHHHHHHHTSCCC
T ss_pred cccccccchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCH------HHHHHHHHccCCC
Confidence 76443222 12234567788999999988889999999999999999999 9999975322 1111122111110
Q ss_pred ccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 972 SEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 972 ~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
.. ........+.+++.+||+.||++||+++++++.|+++
T Consensus 244 ~~---------~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~ 282 (291)
T 1u46_A 244 LP---------RPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEA 282 (291)
T ss_dssp CC---------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CC---------CCcCcCHHHHHHHHHHccCCcccCcCHHHHHHHHHHh
Confidence 00 0111224688999999999999999999999999875
No 242
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=100.00 E-value=1.2e-36 Score=348.27 Aligned_cols=259 Identities=24% Similarity=0.301 Sum_probs=193.6
Q ss_pred cCCCcCCeeeccCCeEEEEEEeCCCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCccceEeeEEeccCc------eEE
Q 035998 742 NNFDQANIIGCGGFGLVYRATLPDGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNLVHLQGYCMHKND------RLL 815 (1020)
Q Consensus 742 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~------~~l 815 (1020)
.+|++.+.||+|+||.||+|+...+..||+|++..... ...+|+++++.++||||+++++++..... .++
T Consensus 40 ~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~----~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~l 115 (394)
T 4e7w_A 40 IAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKR----FKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNL 115 (394)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTT----SCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEEE
T ss_pred ceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcc----hHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEEE
Confidence 46899999999999999999987777799998865432 23469999999999999999999965443 789
Q ss_pred EEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEc-CCCCeEEeecccccc
Q 035998 816 IYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLD-GNFGAHLADFGLARL 894 (1020)
Q Consensus 816 v~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~-~~~~~kl~Dfg~~~~ 894 (1020)
||||++++.+.. +.........+++..++.++.|++.||+|||++ +|+||||||+||+++ .++.+||+|||+++.
T Consensus 116 v~e~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~kL~DFG~a~~ 191 (394)
T 4e7w_A 116 VLEYVPETVYRA-SRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSI---GICHRDIKPQNLLLDPPSGVLKLIDFGSAKI 191 (394)
T ss_dssp EEECCSEEHHHH-HHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEECCCTTCEE
T ss_pred EeeccCccHHHH-HHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEcCCCCcEEEeeCCCccc
Confidence 999998754443 332222345789999999999999999999999 999999999999999 799999999999987
Q ss_pred ccCCCCcccccccccccCccCccccCCC-CCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhh-----
Q 035998 895 ILSPYDTHVTTDLVGTLGYIPPEYGQAS-VATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQE----- 968 (1020)
Q Consensus 895 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~----- 968 (1020)
..... ......||+.|+|||++.+. .++.++||||+||++|||++|+.||...... +...........
T Consensus 192 ~~~~~---~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~---~~l~~i~~~~g~p~~~~ 265 (394)
T 4e7w_A 192 LIAGE---PNVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESGI---DQLVEIIKVLGTPSREQ 265 (394)
T ss_dssp CCTTC---CCCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH---HHHHHHHHHHCCCCHHH
T ss_pred ccCCC---CCcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH---HHHHHHHHHhCCCCHHH
Confidence 63322 22346789999999988664 5899999999999999999999999753321 111111111000
Q ss_pred -----cccccccCcccc-----CccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 969 -----NRESEVLDPFIY-----DKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 969 -----~~~~~~~d~~~~-----~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
.......-+... ..........+.+++.+||+.||.+|||+.|+++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 321 (394)
T 4e7w_A 266 IKTMNPNYMEHKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALC 321 (394)
T ss_dssp HHHHCGGGSSSCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred HHhhChhhhhhccccccCCcHHHhccccCCHHHHHHHHHHhCCChhhCCCHHHHhc
Confidence 000000000000 0011112346889999999999999999999986
No 243
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=100.00 E-value=2.3e-36 Score=337.00 Aligned_cols=251 Identities=24% Similarity=0.345 Sum_probs=196.0
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCch--------hhHHHHHHHHHHHHHcCCCccceEeeEEeccC
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCG--------QMEREFRAEVEALSRAQHPNLVHLQGYCMHKN 811 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~--------~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~ 811 (1020)
.++|++.+.||+|+||.||+|+.. +++.||||++..... .....+.+|++++++++||||+++++++....
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~ 88 (322)
T 2ycf_A 9 RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAED 88 (322)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESSS
T ss_pred hhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCCc
Confidence 357999999999999999999865 578999999875421 12235789999999999999999999987654
Q ss_pred ceEEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCC---eEEee
Q 035998 812 DRLLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFG---AHLAD 888 (1020)
Q Consensus 812 ~~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~---~kl~D 888 (1020)
.++||||+++++|.+++... ..+++..++.++.||+.||+|||++ +|+||||||+||+++.++. +||+|
T Consensus 89 -~~lv~e~~~~~~L~~~~~~~----~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~~~~kl~D 160 (322)
T 2ycf_A 89 -YYIVLELMEGGELFDKVVGN----KRLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLLSSQEEDCLIKITD 160 (322)
T ss_dssp -EEEEEECCTTEETHHHHSTT----CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSSSCCEEECC
T ss_pred -eEEEEecCCCCcHHHHHhcc----CCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEEecCCCCCeEEEcc
Confidence 89999999999999888653 4689999999999999999999999 9999999999999987654 99999
Q ss_pred ccccccccCCCCcccccccccccCccCcccc---CCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHH
Q 035998 889 FGLARLILSPYDTHVTTDLVGTLGYIPPEYG---QASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRM 965 (1020)
Q Consensus 889 fg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~---~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~ 965 (1020)
||+++.... ........||+.|+|||++ ....++.++||||+|+++|+|++|..||........ ......
T Consensus 161 fg~~~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~--~~~~~~-- 233 (322)
T 2ycf_A 161 FGHSKILGE---TSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVS--LKDQIT-- 233 (322)
T ss_dssp CTTCEECCC---CHHHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCSSC--HHHHHH--
T ss_pred Cccceeccc---ccccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchHHH--HHHHHH--
Confidence 999987632 2223345789999999986 356789999999999999999999999975443221 111111
Q ss_pred HhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 966 RQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 966 ~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
. .... ..+..... ....+.+++.+||+.||++||+++|+++
T Consensus 234 -~-~~~~--~~~~~~~~----~~~~~~~li~~~l~~dP~~Rps~~~~l~ 274 (322)
T 2ycf_A 234 -S-GKYN--FIPEVWAE----VSEKALDLVKKLLVVDPKARFTTEEALR 274 (322)
T ss_dssp -H-TCCC--CCHHHHTT----SCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred -h-Cccc--cCchhhhh----cCHHHHHHHHHHcccCHhhCCCHHHHhh
Confidence 1 1000 01111111 1236889999999999999999999985
No 244
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=100.00 E-value=7.9e-36 Score=339.12 Aligned_cols=258 Identities=22% Similarity=0.284 Sum_probs=190.9
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc--hhhHHHHHHHHHHHHHcCCCccceEeeEEeccC------
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC--GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKN------ 811 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------ 811 (1020)
.++|++.+.||+|+||.||+|... +++.||||++.... ....+.+.+|+++++.++||||+++++++...+
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~ 103 (371)
T 2xrw_A 24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ 103 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCC
T ss_pred hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccccc
Confidence 367999999999999999999864 68899999997543 334467889999999999999999999997654
Q ss_pred ceEEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccc
Q 035998 812 DRLLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGL 891 (1020)
Q Consensus 812 ~~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~ 891 (1020)
..++||||+++ +|.+++.. .+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+
T Consensus 104 ~~~lv~e~~~~-~l~~~~~~------~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~ 173 (371)
T 2xrw_A 104 DVYIVMELMDA-NLCQVIQM------ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGL 173 (371)
T ss_dssp EEEEEEECCSE-EHHHHHHS------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCCCC
T ss_pred ceEEEEEcCCC-CHHHHHhh------ccCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCEEEEEeec
Confidence 67999999975 67777752 478999999999999999999999 999999999999999999999999999
Q ss_pred cccccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHH------
Q 035998 892 ARLILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRM------ 965 (1020)
Q Consensus 892 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~------ 965 (1020)
++..... .......||+.|+|||++.+..++.++||||+||++|||++|+.||...... +........
T Consensus 174 a~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~---~~~~~i~~~~~~~~~ 247 (371)
T 2xrw_A 174 ARTAGTS---FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHI---DQWNKVIEQLGTPCP 247 (371)
T ss_dssp -------------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHH---HHHHHHHC-CCCCCH
T ss_pred ccccccc---cccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHH---HHHHHHHHHhCCCCH
Confidence 9865322 2233467899999999999999999999999999999999999999753221 111110000
Q ss_pred -------------Hhhccc-c-----cccCccccCc---cCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 966 -------------RQENRE-S-----EVLDPFIYDK---QHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 966 -------------~~~~~~-~-----~~~d~~~~~~---~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
...... . .......... ........+.+++.+||+.||++|||++|+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~ 318 (371)
T 2xrw_A 248 EFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQ 318 (371)
T ss_dssp HHHTTSCHHHHHHHHSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred HHHHHhhhHHHHHHhhCccccccchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCCCHHHHhC
Confidence 000000 0 0000000000 01123457899999999999999999999987
No 245
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=100.00 E-value=2.1e-36 Score=333.64 Aligned_cols=266 Identities=24% Similarity=0.335 Sum_probs=201.7
Q ss_pred cCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCch--hhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEEE
Q 035998 742 NNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCG--QMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIYS 818 (1020)
Q Consensus 742 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 818 (1020)
++|++.+.||+|+||.||+|+.. +++.||||++..... ...+.+.+|++++++++||||+++++++...+..++|||
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 82 (299)
T 2r3i_A 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE 82 (299)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred chhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEecCCceEEEEE
Confidence 57899999999999999999875 689999999875432 223568899999999999999999999999999999999
Q ss_pred eccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccCC
Q 035998 819 FMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILSP 898 (1020)
Q Consensus 819 ~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~ 898 (1020)
|++ ++|.+++.... ...+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||.++....+
T Consensus 83 ~~~-~~L~~~~~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~ 156 (299)
T 2r3i_A 83 FLH-QDLKKFMDASA--LTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVP 156 (299)
T ss_dssp CCS-EEHHHHHHHTT--TTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECSTTHHHHHCCC
T ss_pred ccc-CCHHHHHHhhh--ccCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHeEEcCCCCEEECcchhhhhccCC
Confidence 998 59999887642 24588999999999999999999999 9999999999999999999999999999876432
Q ss_pred CCcccccccccccCccCccccCCCC-CCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHH-Hhhcc--ccc-
Q 035998 899 YDTHVTTDLVGTLGYIPPEYGQASV-ATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRM-RQENR--ESE- 973 (1020)
Q Consensus 899 ~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~-~~~~~--~~~- 973 (1020)
. .......+++.|+|||++.+.. ++.++||||+|+++|||++|+.||..... .+........ ..... ...
T Consensus 157 ~--~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 231 (299)
T 2r3i_A 157 V--RTYTHEVVTLWYRAPEILLGAKYYSTAVDIWSLGCIFAEMVTRRALFPGDSE---IDQLFRIFRTLGTPDEVVWPGV 231 (299)
T ss_dssp S--BCTTSCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSH---HHHHHHHHHHHCCCCTTTSTTG
T ss_pred c--cccCcccccccccCcHHhhccccCChHHHHHHHHHHHHHHHhCCCCCCCccH---HHHHHHHHHHhCCCchhhhhHh
Confidence 2 2223456899999999887765 79999999999999999999999975322 1111111111 10000 000
Q ss_pred ----ccCcccc----C---ccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH--HHHh
Q 035998 974 ----VLDPFIY----D---KQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS--WLDS 1018 (1020)
Q Consensus 974 ----~~d~~~~----~---~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~--~L~~ 1018 (1020)
...+... . ...+.....+.+++.+|++.||++|||++|+++ ++++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~~l~hp~~~~ 289 (299)
T 2r3i_A 232 TSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQD 289 (299)
T ss_dssp GGSTTCCTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHTSGGGTT
T ss_pred hcCcccchhhhcccchhhHhhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhcChhhhc
Confidence 0000000 0 000112346789999999999999999999987 4443
No 246
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=100.00 E-value=1.8e-36 Score=343.65 Aligned_cols=262 Identities=24% Similarity=0.323 Sum_probs=200.7
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc-hhhHHHHHHHHHHHHHcCCCccceEeeEEecc-----Cce
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC-GQMEREFRAEVEALSRAQHPNLVHLQGYCMHK-----NDR 813 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-----~~~ 813 (1020)
.++|++.+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|++++++++||||+++++++... ...
T Consensus 26 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 105 (364)
T 3qyz_A 26 GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV 105 (364)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred cccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccceE
Confidence 468999999999999999999865 67889999997543 33346788999999999999999999999754 367
Q ss_pred EEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccc
Q 035998 814 LLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLAR 893 (1020)
Q Consensus 814 ~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~ 893 (1020)
++||||+++ +|.+++... .+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++
T Consensus 106 ~iv~e~~~~-~L~~~l~~~-----~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~ 176 (364)
T 3qyz_A 106 YIVQDLMET-DLYKLLKTQ-----HLSNDHICYFLYQILRGLKYIHSA---NVLHRDLKPSNLLLNTTCDLKICDFGLAR 176 (364)
T ss_dssp EEEEECCSE-EHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCE
T ss_pred EEEEcccCc-CHHHHHHhC-----CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCChHhEEECCCCCEEEEeCcceE
Confidence 999999975 898888753 589999999999999999999999 99999999999999999999999999998
Q ss_pred cccCCCCc-ccccccccccCccCccccC-CCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhccc
Q 035998 894 LILSPYDT-HVTTDLVGTLGYIPPEYGQ-ASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRE 971 (1020)
Q Consensus 894 ~~~~~~~~-~~~~~~~gt~~y~aPE~~~-~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~ 971 (1020)
........ .......||+.|+|||++. +..++.++||||+||++|||++|+.||......+ ..............
T Consensus 177 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~---~~~~i~~~~~~~~~ 253 (364)
T 3qyz_A 177 VADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLD---QLNHILGILGSPSQ 253 (364)
T ss_dssp ECCGGGCBCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGGG---HHHHHHHHHCSCCH
T ss_pred ecCCCCCccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChHH---HHHHHHHHhCCCCH
Confidence 76432111 1224457899999999754 5568999999999999999999999997544322 22211111100000
Q ss_pred c---------------cccCc--cccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 972 S---------------EVLDP--FIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 972 ~---------------~~~d~--~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
. ....+ .......+.....+.+++.+||+.||++|||++|+++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 313 (364)
T 3qyz_A 254 EDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALA 313 (364)
T ss_dssp HHHHTCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHHHHhhhhhHHHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 0 00000 0000001112245889999999999999999999987
No 247
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=100.00 E-value=2.3e-36 Score=333.12 Aligned_cols=251 Identities=25% Similarity=0.373 Sum_probs=202.7
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc---------hhhHHHHHHHHHHHHHcC-CCccceEeeEEec
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC---------GQMEREFRAEVEALSRAQ-HPNLVHLQGYCMH 809 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---------~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~ 809 (1020)
.++|++.+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|+++++++. ||||+++++++..
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~ 95 (298)
T 1phk_A 16 YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYET 95 (298)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEC
T ss_pred hhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeecc
Confidence 468999999999999999999875 68899999987542 122356789999999995 9999999999999
Q ss_pred cCceEEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeec
Q 035998 810 KNDRLLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADF 889 (1020)
Q Consensus 810 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Df 889 (1020)
....++||||+++++|.+++... ..+++..++.++.|++.||+|||+. +++||||||+||+++.++.+||+||
T Consensus 96 ~~~~~lv~e~~~~~~L~~~l~~~----~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~df 168 (298)
T 1phk_A 96 NTFFFLVFDLMKKGELFDYLTEK----VTLSEKETRKIMRALLEVICALHKL---NIVHRDLKPENILLDDDMNIKLTDF 168 (298)
T ss_dssp SSEEEEEEECCTTCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCC
T ss_pred CCeEEEEEeccCCCcHHHHHhcc----CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcceEEEcCCCcEEEecc
Confidence 99999999999999999999864 4689999999999999999999999 9999999999999999999999999
Q ss_pred cccccccCCCCcccccccccccCccCccccC------CCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHH
Q 035998 890 GLARLILSPYDTHVTTDLVGTLGYIPPEYGQ------ASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVI 963 (1020)
Q Consensus 890 g~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~------~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~ 963 (1020)
|+++..... .......|++.|+|||++. ...++.++||||+|+++|||++|+.||..... .....
T Consensus 169 g~~~~~~~~---~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~------~~~~~ 239 (298)
T 1phk_A 169 GFSCQLDPG---EKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQ------MLMLR 239 (298)
T ss_dssp TTCEECCTT---CCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH------HHHHH
T ss_pred cchhhcCCC---cccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCccH------HHHHH
Confidence 999876432 2233457899999999874 56789999999999999999999999964321 11111
Q ss_pred HHHhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 964 RMRQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 964 ~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
........ ...+ ........+.+++.+||+.||++||+++|+++
T Consensus 240 ~~~~~~~~--~~~~-----~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 283 (298)
T 1phk_A 240 MIMSGNYQ--FGSP-----EWDDYSDTVKDLVSRFLVVQPQKRYTAEEALA 283 (298)
T ss_dssp HHHHTCCC--CCTT-----TGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred HHhcCCcc--cCcc-----cccccCHHHHHHHHHHccCCcccCCCHHHHHh
Confidence 11111110 0000 00112246889999999999999999999986
No 248
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=100.00 E-value=2.9e-36 Score=348.73 Aligned_cols=198 Identities=22% Similarity=0.289 Sum_probs=172.4
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCchhhHHHHHHHHHHHHHc------CCCccceEeeEEeccCce
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCGQMEREFRAEVEALSRA------QHPNLVHLQGYCMHKNDR 813 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l------~h~niv~l~~~~~~~~~~ 813 (1020)
..+|++.+.||+|+||.||+|... +++.||||++.... ...+++.+|+++++.+ +|+||+++++++......
T Consensus 96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~ 174 (429)
T 3kvw_A 96 AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEK-RFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHI 174 (429)
T ss_dssp TTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTEE
T ss_pred cCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCcc-chHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCeE
Confidence 457999999999999999999865 58899999997653 3346778899988887 577999999999999999
Q ss_pred EEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCC--eEEeeccc
Q 035998 814 LLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFG--AHLADFGL 891 (1020)
Q Consensus 814 ~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~--~kl~Dfg~ 891 (1020)
++||||+. ++|.+++.... ...+++..++.++.||+.||+|||+. +|+||||||+||+++.++. +||+|||+
T Consensus 175 ~lv~e~~~-~~L~~~l~~~~--~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NILl~~~~~~~vkL~DFG~ 248 (429)
T 3kvw_A 175 CMTFELLS-MNLYELIKKNK--FQGFSLPLVRKFAHSILQCLDALHKN---RIIHCDLKPENILLKQQGRSGIKVIDFGS 248 (429)
T ss_dssp EEEECCCC-CBHHHHHHHTT--TCCCCHHHHHHHHHHHHHHHHHHHHH---TEECSCCSGGGEEESSTTSCCEEECCCTT
T ss_pred EEEEeccC-CCHHHHHHhcc--CCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEccCCCcceEEeeccc
Confidence 99999996 58988887642 24589999999999999999999999 9999999999999999887 99999999
Q ss_pred cccccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCC
Q 035998 892 ARLILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMC 950 (1020)
Q Consensus 892 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~ 950 (1020)
++.... ......||+.|+|||++.+..++.++|||||||++|||++|+.||...
T Consensus 249 a~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~ 302 (429)
T 3kvw_A 249 SCYEHQ-----RVYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGE 302 (429)
T ss_dssp CEETTC-----CCCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred ceecCC-----cccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCC
Confidence 976432 123457899999999999999999999999999999999999999754
No 249
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=100.00 E-value=1.8e-36 Score=349.62 Aligned_cols=260 Identities=25% Similarity=0.284 Sum_probs=194.0
Q ss_pred cCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCccceEeeEEecc------CceE
Q 035998 742 NNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNLVHLQGYCMHK------NDRL 814 (1020)
Q Consensus 742 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~------~~~~ 814 (1020)
.+|++.+.||+|+||.||+|++. +++.||||++..+.. ...+|++++++++||||+++++++... ...+
T Consensus 54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~~----~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~ 129 (420)
T 1j1b_A 54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR----FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLN 129 (420)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCTT----SCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEE
T ss_pred ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccch----hHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEE
Confidence 46888999999999999999975 689999999875432 234799999999999999999998542 1256
Q ss_pred EEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCC-CCeEEeeccccc
Q 035998 815 LIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGN-FGAHLADFGLAR 893 (1020)
Q Consensus 815 lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~-~~~kl~Dfg~~~ 893 (1020)
+||||+++ ++.+.+.........+++..+..++.||++||+|||++ +|+||||||+|||++.+ +.+||+|||+++
T Consensus 130 lv~e~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NILl~~~~~~~kl~DFG~a~ 205 (420)
T 1j1b_A 130 LVLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSF---GICHRDIKPQNLLLDPDTAVLKLCDFGSAK 205 (420)
T ss_dssp EEEECCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred eehhcccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChhhEEEeCCCCeEEeccchhhh
Confidence 89999986 66666654433456789999999999999999999999 99999999999999965 568999999998
Q ss_pred cccCCCCcccccccccccCccCccccCCC-CCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHH------
Q 035998 894 LILSPYDTHVTTDLVGTLGYIPPEYGQAS-VATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMR------ 966 (1020)
Q Consensus 894 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~------ 966 (1020)
...... ......||+.|+|||++.+. .++.++||||+||++|||++|+.||...... ...........
T Consensus 206 ~~~~~~---~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~~--~~l~~i~~~lg~p~~~~ 280 (420)
T 1j1b_A 206 QLVRGE---PNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGV--DQLVEIIKVLGTPTREQ 280 (420)
T ss_dssp ECCTTC---CCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHHHCSCCHHH
T ss_pred hcccCC---CceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHHHHhCCCCHHH
Confidence 764321 22346789999999988664 7999999999999999999999999753221 11111111100
Q ss_pred --h-hcccccccCccccCc-----cCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 967 --Q-ENRESEVLDPFIYDK-----QHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 967 --~-~~~~~~~~d~~~~~~-----~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
. .....+...+.+... ..+.....+.+++.+||+.||++||++.|+++
T Consensus 281 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~ 336 (420)
T 1j1b_A 281 IREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACA 336 (420)
T ss_dssp HHHHCSCCCCCCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHhhChhhhhhccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChhHCCCHHHHhC
Confidence 0 000001111111000 11122346889999999999999999999986
No 250
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.1e-35 Score=330.25 Aligned_cols=251 Identities=28% Similarity=0.433 Sum_probs=200.0
Q ss_pred hccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEEE
Q 035998 740 STNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIYS 818 (1020)
Q Consensus 740 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 818 (1020)
..++|++.+.||+|+||.||+|... +|+.||||++.... ..+.+.+|++++++++||||+++++++.+....++|||
T Consensus 27 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 104 (314)
T 3com_A 27 PEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES--DLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVME 104 (314)
T ss_dssp ---CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS--CCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred chhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH--HHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEee
Confidence 3567999999999999999999875 58999999997653 23568899999999999999999999999999999999
Q ss_pred eccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccCC
Q 035998 819 FMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILSP 898 (1020)
Q Consensus 819 ~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~ 898 (1020)
|+++++|.+++... ...+++..++.++.|++.||+|||+. +++||||||+||+++.++.+||+|||.+......
T Consensus 105 ~~~~~~L~~~~~~~---~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~ 178 (314)
T 3com_A 105 YCGAGSVSDIIRLR---NKTLTEDEIATILQSTLKGLEYLHFM---RKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDT 178 (314)
T ss_dssp CCTTEEHHHHHHHH---TCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECBTT
T ss_pred cCCCCCHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHHhC---CCcCCCcCHHHEEECCCCCEEEeecccchhhhhh
Confidence 99999999998743 24689999999999999999999999 9999999999999999999999999999876432
Q ss_pred CCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccccccCcc
Q 035998 899 YDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVLDPF 978 (1020)
Q Consensus 899 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 978 (1020)
. .......|++.|+|||++.+..++.++||||+|+++|+|++|+.||..... ......... ........+
T Consensus 179 ~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~------~~~~~~~~~-~~~~~~~~~- 248 (314)
T 3com_A 179 M--AKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHP------MRAIFMIPT-NPPPTFRKP- 248 (314)
T ss_dssp B--SCBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCH------HHHHHHHHH-SCCCCCSSG-
T ss_pred c--cccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCCh------HHHHHHHhc-CCCcccCCc-
Confidence 1 223345789999999999999999999999999999999999999974321 111111111 111111111
Q ss_pred ccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 979 IYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 979 ~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
......+.+++.+||+.||.+|||+.++++
T Consensus 249 ------~~~~~~l~~li~~~l~~dp~~Rpt~~~ll~ 278 (314)
T 3com_A 249 ------ELWSDNFTDFVKQCLVKSPEQRATATQLLQ 278 (314)
T ss_dssp ------GGSCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred ------ccCCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence 111236889999999999999999999986
No 251
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=100.00 E-value=7.2e-37 Score=337.98 Aligned_cols=264 Identities=27% Similarity=0.461 Sum_probs=187.3
Q ss_pred HhccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc-hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEE
Q 035998 739 ESTNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC-GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLI 816 (1020)
Q Consensus 739 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 816 (1020)
...++|++.+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|++++++++||||+++++++...+..++|
T Consensus 12 i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 91 (303)
T 2vwi_A 12 INRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLV 91 (303)
T ss_dssp -CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSSCEEEE
T ss_pred cchhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEEE
Confidence 34678999999999999999999864 68999999986543 23345688999999999999999999999999999999
Q ss_pred EEeccCCChhhhhhhcC----CCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeecccc
Q 035998 817 YSFMENGSLDYWLHEKL----DGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLA 892 (1020)
Q Consensus 817 ~e~~~~g~L~~~l~~~~----~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~ 892 (1020)
|||+++++|.+++.... .....+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++
T Consensus 92 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~ 168 (303)
T 2vwi_A 92 MKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKN---GQIHRDVKAGNILLGEDGSVQIADFGVS 168 (303)
T ss_dssp EECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTCCEEECCCHHH
T ss_pred ehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCCChhhEEEcCCCCEEEEeccch
Confidence 99999999999987521 1234689999999999999999999999 9999999999999999999999999999
Q ss_pred ccccCCCC---cccccccccccCccCccccCC-CCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhh
Q 035998 893 RLILSPYD---THVTTDLVGTLGYIPPEYGQA-SVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQE 968 (1020)
Q Consensus 893 ~~~~~~~~---~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~ 968 (1020)
+....... ........||+.|+|||++.+ ..++.++||||+|+++|||++|+.||....... ... ......
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~---~~~--~~~~~~ 243 (303)
T 2vwi_A 169 AFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMK---VLM--LTLQND 243 (303)
T ss_dssp HHCC---------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGG---HHH--HHHTSS
T ss_pred heeccCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCchhh---HHH--HHhccC
Confidence 87643211 112234578999999998765 568999999999999999999999997543221 111 111110
Q ss_pred c--ccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 969 N--RESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 969 ~--~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
. ......++...... ...+.+++.+||+.||.+||+++|+++
T Consensus 244 ~~~~~~~~~~~~~~~~~----~~~~~~li~~~l~~dp~~Rps~~~ll~ 287 (303)
T 2vwi_A 244 PPSLETGVQDKEMLKKY----GKSFRKMISLCLQKDPEKRPTAAELLR 287 (303)
T ss_dssp CCCTTC-----CCCCCC----CHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred CCccccccccchhhhhh----hHHHHHHHHHHccCChhhCcCHHHHhh
Confidence 0 00011111111122 235789999999999999999999986
No 252
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=100.00 E-value=6e-37 Score=346.80 Aligned_cols=257 Identities=24% Similarity=0.316 Sum_probs=182.3
Q ss_pred ccCCCcCCeeeccCCeEEEEEEe-CCCCEEEEEEecCCc--hhhHHHHHHHHHHHHHcCCCccceEeeEEecc------C
Q 035998 741 TNNFDQANIIGCGGFGLVYRATL-PDGRNVAIKRLSGDC--GQMEREFRAEVEALSRAQHPNLVHLQGYCMHK------N 811 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~------~ 811 (1020)
.++|++.+.||+|+||.||+|.. .+|+.||||++.... ....+.+.+|+++++.++||||+++++++... .
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~ 107 (367)
T 2fst_X 28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN 107 (367)
T ss_dssp ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCC
Confidence 46899999999999999999985 468899999987542 23456788999999999999999999998754 5
Q ss_pred ceEEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccc
Q 035998 812 DRLLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGL 891 (1020)
Q Consensus 812 ~~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~ 891 (1020)
..++|+||+ +++|.+++.. ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++.+||+|||+
T Consensus 108 ~~~lv~e~~-~~~L~~~~~~-----~~l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kL~DFG~ 178 (367)
T 2fst_X 108 DVYLVTHLM-GADLNNIVKC-----QKLTDDHVQFLIYQILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILDFGL 178 (367)
T ss_dssp CCEEEEECC-CEECC----------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECC---
T ss_pred eEEEEeccc-CCCHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHhhEEECCCCCEEEeeccc
Confidence 679999999 6788888764 3689999999999999999999999 999999999999999999999999999
Q ss_pred cccccCCCCcccccccccccCccCccccCC-CCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcc
Q 035998 892 ARLILSPYDTHVTTDLVGTLGYIPPEYGQA-SVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENR 970 (1020)
Q Consensus 892 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~ 970 (1020)
++..... .....||+.|+|||++.+ ..++.++||||+||++|||++|+.||..... .+.............
T Consensus 179 a~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~---~~~l~~i~~~~g~p~ 250 (367)
T 2fst_X 179 ARHTADE-----MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDH---IDQLKLILRLVGTPG 250 (367)
T ss_dssp -----------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSH---HHHHHHHHHHHCSCC
T ss_pred ccccccc-----CCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCH---HHHHHHHHHHhCCCC
Confidence 9865321 234678999999998876 6889999999999999999999999975332 122221111110000
Q ss_pred ---cccccC--------------ccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 971 ---ESEVLD--------------PFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 971 ---~~~~~d--------------~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
...+.. +.......+.....+.+++.+||+.||.+|||++|+++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~ 311 (367)
T 2fst_X 251 AELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALA 311 (367)
T ss_dssp HHHHTTCCCHHHHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHHHHHhhhHHHHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhc
Confidence 000000 00000000111245789999999999999999999986
No 253
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.1e-36 Score=337.96 Aligned_cols=257 Identities=24% Similarity=0.415 Sum_probs=198.1
Q ss_pred HHHHHhccCCCcCCeeeccCCeEEEEEEe-CCCCEEEEEEecCCchhhHHHHHHHHHHHHHc-CCCccceEeeEEec---
Q 035998 735 DDILESTNNFDQANIIGCGGFGLVYRATL-PDGRNVAIKRLSGDCGQMEREFRAEVEALSRA-QHPNLVHLQGYCMH--- 809 (1020)
Q Consensus 735 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~--- 809 (1020)
.++....++|++.+.||+|+||.||+|+. .+++.||||++..... ..+.+.+|+++++++ +||||+++++++..
T Consensus 17 ~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~ 95 (326)
T 2x7f_A 17 SALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGD-EEEEIKQEINMLKKYSHHRNIATYYGAFIKKNP 95 (326)
T ss_dssp CCCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS-TTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC-
T ss_pred hhccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcc-cHHHHHHHHHHHHhccCCCCeeeeeeEEeeccC
Confidence 34445678899999999999999999987 4789999999875533 346788999999999 89999999999986
Q ss_pred ---cCceEEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEE
Q 035998 810 ---KNDRLLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHL 886 (1020)
Q Consensus 810 ---~~~~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl 886 (1020)
....++||||+++++|.+++.... ...+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||
T Consensus 96 ~~~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~kl 170 (326)
T 2x7f_A 96 PGMDDQLWLVMEFCGAGSVTDLIKNTK--GNTLKEEWIAYICREILRGLSHLHQH---KVIHRDIKGQNVLLTENAEVKL 170 (326)
T ss_dssp -CCCCEEEEEEECCTTEEHHHHHHHSG--GGCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTCCEEE
T ss_pred ccccceEEEEEEcCCCCcHHHHHHhcc--cCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCcHHHEEEcCCCCEEE
Confidence 457899999999999999998642 24688999999999999999999999 9999999999999999999999
Q ss_pred eeccccccccCCCCcccccccccccCccCccccC-----CCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHH
Q 035998 887 ADFGLARLILSPYDTHVTTDLVGTLGYIPPEYGQ-----ASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISW 961 (1020)
Q Consensus 887 ~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~ 961 (1020)
+|||++....... .......|++.|+|||++. +..++.++||||+|+++|+|++|+.||..... ...
T Consensus 171 ~Dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~------~~~ 242 (326)
T 2x7f_A 171 VDFGVSAQLDRTV--GRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHP------MRA 242 (326)
T ss_dssp CCCTTTC---------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSCH------HHH
T ss_pred eeCcCceecCcCc--cccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCcH------HHH
Confidence 9999998653321 1223457899999999876 56789999999999999999999999964321 111
Q ss_pred HHHHHhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 962 VIRMRQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 962 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
....... ....... .. ....+.+++.+||+.||.+||+++++++
T Consensus 243 ~~~~~~~-~~~~~~~----~~----~~~~l~~li~~~l~~dp~~Rps~~~ll~ 286 (326)
T 2x7f_A 243 LFLIPRN-PAPRLKS----KK----WSKKFQSFIESCLVKNHSQRPATEQLMK 286 (326)
T ss_dssp HHHHHHS-CCCCCSC----SC----SCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred HHHhhcC-ccccCCc----cc----cCHHHHHHHHHHhccChhhCCCHHHHhh
Confidence 1111111 1111100 11 1236889999999999999999999987
No 254
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=100.00 E-value=5.6e-36 Score=364.32 Aligned_cols=248 Identities=22% Similarity=0.300 Sum_probs=203.4
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc---hhhHHHHHHHHHHHHHc-CCCccceEeeEEeccCceEE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC---GQMEREFRAEVEALSRA-QHPNLVHLQGYCMHKNDRLL 815 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l 815 (1020)
.++|++.+.||+|+||.||+|+.. +++.||||++.... ....+.+..|.+++..+ +||+|+++++++.+.+..|+
T Consensus 340 ~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~l 419 (674)
T 3pfq_A 340 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYF 419 (674)
T ss_dssp CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEEE
T ss_pred ccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEEE
Confidence 468999999999999999999865 68899999997542 12235677899998887 79999999999999999999
Q ss_pred EEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccc
Q 035998 816 IYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLI 895 (1020)
Q Consensus 816 v~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~ 895 (1020)
||||+++|+|.+++... ..+++..++.++.||+.||+|||++ +||||||||+|||++.++++||+|||+++..
T Consensus 420 V~E~~~gg~L~~~l~~~----~~~~~~~~~~~~~qi~~aL~~LH~~---gIiHrDLKp~NILl~~~g~ikL~DFGla~~~ 492 (674)
T 3pfq_A 420 VMEYVNGGDLMYHIQQV----GRFKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKEN 492 (674)
T ss_dssp EEECCCSCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHHHT---SEECCCCCSTTEEECSSSCEEECCCTTCEEC
T ss_pred EEeCcCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHhC---CeEeccCChhhEEEcCCCcEEEeecceeecc
Confidence 99999999999999875 4689999999999999999999999 9999999999999999999999999999864
Q ss_pred cCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhccccccc
Q 035998 896 LSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVL 975 (1020)
Q Consensus 896 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 975 (1020)
... ........||+.|+|||++.+..++.++|||||||++|||++|+.||..... ......+..... .
T Consensus 493 ~~~--~~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~------~~~~~~i~~~~~--~-- 560 (674)
T 3pfq_A 493 IWD--GVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDE------DELFQSIMEHNV--A-- 560 (674)
T ss_dssp CCT--TCCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSH------HHHHHHHHSSCC--C--
T ss_pred ccC--CcccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCCH------HHHHHHHHhCCC--C--
Confidence 322 2234457899999999999999999999999999999999999999975322 111122211110 0
Q ss_pred CccccCccCHHHHHHHHHHHhhccCCCCCCCCCH-----HHHHH
Q 035998 976 DPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTT-----QQLVS 1014 (1020)
Q Consensus 976 d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~-----~evl~ 1014 (1020)
.+.....++.+++.+||+.||++||++ +||++
T Consensus 561 -------~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~ei~~ 597 (674)
T 3pfq_A 561 -------YPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKE 597 (674)
T ss_dssp -------CCTTSCHHHHHHHHHHSCSSSTTCTTCSTTHHHHHHS
T ss_pred -------CCccCCHHHHHHHHHHccCCHHHCCCCCCCcHHHHhc
Confidence 011122368899999999999999997 77764
No 255
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=100.00 E-value=1.5e-36 Score=344.23 Aligned_cols=268 Identities=19% Similarity=0.257 Sum_probs=191.0
Q ss_pred HHHHhccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCccceEeeEEeccCc--
Q 035998 736 DILESTNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNLVHLQGYCMHKND-- 812 (1020)
Q Consensus 736 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~-- 812 (1020)
......++|++.+.||+|+||.||+|+.. +++.||||++..+... .....+|++.++.++||||+++++++.....
T Consensus 17 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~~ 95 (360)
T 3e3p_A 17 RSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRF-RNRELQIMQDLAVLHHPNIVQLQSYFYTLGERD 95 (360)
T ss_dssp HHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCTTC-CCHHHHHHHHHHHHCCTTBCCEEEEEEEECSSC
T ss_pred hchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCccc-cHHHHHHHHHHHhcCCCCcccHHHhhhcccccc
Confidence 34556789999999999999999999874 6899999998655322 2345678888889999999999999976443
Q ss_pred -----eEEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhH--hcCCCCeEecCCCCCCEEEcC-CCCe
Q 035998 813 -----RLLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLH--QSCEPHILHRDIKSSNILLDG-NFGA 884 (1020)
Q Consensus 813 -----~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH--~~~~~~ivH~Dlkp~NIll~~-~~~~ 884 (1020)
.++||||+++ ++...+.........+++..+..++.|++.|++||| +. +|+||||||+||+++. ++.+
T Consensus 96 ~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~---~ivH~Dlkp~NIll~~~~~~~ 171 (360)
T 3e3p_A 96 RRDIYLNVVMEYVPD-TLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSV---NVCHRDIKPHNVLVNEADGTL 171 (360)
T ss_dssp TTCEEEEEEEECCSC-BHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTTT---CCBCSCCCGGGEEEETTTTEE
T ss_pred ccceeEEEEeecccc-cHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCCC---CeecCcCCHHHEEEeCCCCcE
Confidence 7899999986 555555544444567899999999999999999999 77 9999999999999996 8999
Q ss_pred EEeeccccccccCCCCcccccccccccCccCccccCCC-CCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHH
Q 035998 885 HLADFGLARLILSPYDTHVTTDLVGTLGYIPPEYGQAS-VATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVI 963 (1020)
Q Consensus 885 kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~ 963 (1020)
||+|||+++..... .......||+.|+|||++.+. .++.++||||+||++|||++|+.||...... .......
T Consensus 172 kl~Dfg~a~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~---~~~~~~~ 245 (360)
T 3e3p_A 172 KLCDFGSAKKLSPS---EPNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSA---GQLHEIV 245 (360)
T ss_dssp EECCCTTCBCCCTT---SCCCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH---HHHHHHH
T ss_pred EEeeCCCceecCCC---CCcccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCChH---HHHHHHH
Confidence 99999999876432 223345789999999988654 4899999999999999999999999753321 1111111
Q ss_pred HHHhh------------cccccccC------ccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 964 RMRQE------------NRESEVLD------PFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 964 ~~~~~------------~~~~~~~d------~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
..... .......+ ..............+.+++.+||+.||.+|||++|+++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 314 (360)
T 3e3p_A 246 RVLGCPSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALC 314 (360)
T ss_dssp HHHCCCCHHHHHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred HHcCCCCHHHHHhcccchhhccccccccCCcccccchhhccccHHHHHHHHHHhccCccccCCHHHHhc
Confidence 11000 00000000 00001111123457899999999999999999999986
No 256
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=100.00 E-value=1.2e-35 Score=329.63 Aligned_cols=252 Identities=27% Similarity=0.368 Sum_probs=195.8
Q ss_pred hccCCCcCCeeeccCCeEEEEEEeCCCCEEEEEEecCCc--hhhHHHHHHHHHHHHHcC--CCccceEeeEEeccCceEE
Q 035998 740 STNNFDQANIIGCGGFGLVYRATLPDGRNVAIKRLSGDC--GQMEREFRAEVEALSRAQ--HPNLVHLQGYCMHKNDRLL 815 (1020)
Q Consensus 740 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~--h~niv~l~~~~~~~~~~~l 815 (1020)
..++|++.+.||+|+||.||+|...+++.||||++.... ....+.+.+|++++++++ ||||+++++++.+.+..++
T Consensus 26 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~l 105 (313)
T 3cek_A 26 KGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYM 105 (313)
T ss_dssp TTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEEEE
T ss_pred ccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeecCCEEEE
Confidence 356799999999999999999998889999999986543 334567899999999997 5999999999999999999
Q ss_pred EEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccc
Q 035998 816 IYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLI 895 (1020)
Q Consensus 816 v~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~ 895 (1020)
||| +.+++|.+++... ..+++..++.++.|++.||+|||+. +|+||||||+||++++ +.+||+|||+++..
T Consensus 106 v~e-~~~~~L~~~l~~~----~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~-~~~kL~Dfg~~~~~ 176 (313)
T 3cek_A 106 VME-CGNIDLNSWLKKK----KSIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIVD-GMLKLIDFGIANQM 176 (313)
T ss_dssp EEC-CCSEEHHHHHHHC----SSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEET-TEEEECCCSSSCC-
T ss_pred EEe-cCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCcccEEEEC-CeEEEeeccccccc
Confidence 999 5688999999864 4689999999999999999999999 9999999999999964 89999999999876
Q ss_pred cCCCCcccccccccccCccCccccCC-----------CCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHH
Q 035998 896 LSPYDTHVTTDLVGTLGYIPPEYGQA-----------SVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIR 964 (1020)
Q Consensus 896 ~~~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~ 964 (1020)
.............|++.|+|||++.+ ..++.++||||+|+++|||++|+.||..... .......
T Consensus 177 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~-----~~~~~~~ 251 (313)
T 3cek_A 177 QPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIIN-----QISKLHA 251 (313)
T ss_dssp -------------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCS-----HHHHHHH
T ss_pred cCccccccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHH-----HHHHHHH
Confidence 44332223344578999999998765 5788999999999999999999999964321 1111122
Q ss_pred HHhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 965 MRQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 965 ~~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
.......... +......+.+++.+||+.||.+||+++|+++
T Consensus 252 ~~~~~~~~~~---------~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 292 (313)
T 3cek_A 252 IIDPNHEIEF---------PDIPEKDLQDVLKCCLKRDPKQRISIPELLA 292 (313)
T ss_dssp HHCTTSCCCC---------CCCSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHhcccccCC---------cccchHHHHHHHHHHccCCcccCcCHHHHhc
Confidence 2111111110 0011235889999999999999999999986
No 257
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=100.00 E-value=4.1e-36 Score=338.94 Aligned_cols=259 Identities=22% Similarity=0.338 Sum_probs=203.7
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeCCCCEEEEEEecCCchh-----------------hHHHHHHHHHHHHHcCCCccceE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLPDGRNVAIKRLSGDCGQ-----------------MEREFRAEVEALSRAQHPNLVHL 803 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~-----------------~~~~~~~E~~~l~~l~h~niv~l 803 (1020)
.++|++.+.||+|+||.||+|+. +++.||||++...... ..+.+.+|++++++++||||+++
T Consensus 30 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~ 108 (348)
T 2pml_X 30 INDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTC 108 (348)
T ss_dssp ETTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred cCceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceE
Confidence 46899999999999999999999 8999999998643211 11678999999999999999999
Q ss_pred eeEEeccCceEEEEEeccCCChhhh------hhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHh-cCCCCeEecCCCCCCE
Q 035998 804 QGYCMHKNDRLLIYSFMENGSLDYW------LHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQ-SCEPHILHRDIKSSNI 876 (1020)
Q Consensus 804 ~~~~~~~~~~~lv~e~~~~g~L~~~------l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~-~~~~~ivH~Dlkp~NI 876 (1020)
++++.+.+..++||||+++++|.++ +... ....+++..++.++.|++.||+|||+ . +|+||||||+||
T Consensus 109 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~--~~~~~~~~~~~~i~~qi~~~l~~lH~~~---~i~H~dl~p~Ni 183 (348)
T 2pml_X 109 EGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKN--YTCFIPIQVIKCIIKSVLNSFSYIHNEK---NICHRDVKPSNI 183 (348)
T ss_dssp SEEEESSSEEEEEEECCTTCBSSEESSSEESSCSS--SCCCCCHHHHHHHHHHHHHHHHHHHHTS---CEECCCCCGGGE
T ss_pred EEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhc--cccCCCHHHHHHHHHHHHHHHHHHhccC---CEeecCCChHhE
Confidence 9999999999999999999999998 4331 24678999999999999999999998 8 999999999999
Q ss_pred EEcCCCCeEEeeccccccccCCCCcccccccccccCccCccccCCC-CCCc-hhhHHHHHHHHHHHHcCCCCCCCCCCCC
Q 035998 877 LLDGNFGAHLADFGLARLILSPYDTHVTTDLVGTLGYIPPEYGQAS-VATY-KGDVYSFGVVLLELLTGKRPMDMCKPKG 954 (1020)
Q Consensus 877 ll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~-~~DvwSlGvil~elltg~~pf~~~~~~~ 954 (1020)
+++.++.+||+|||.++..... ......|++.|+|||+..+. .++. ++||||+|+++|||++|+.||......
T Consensus 184 l~~~~~~~kl~dfg~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~- 258 (348)
T 2pml_X 184 LMDKNGRVKLSDFGESEYMVDK----KIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISL- 258 (348)
T ss_dssp EECTTSCEEECCCTTCEECBTT----EECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSCS-
T ss_pred EEcCCCcEEEeccccccccccc----cccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCcH-
Confidence 9999999999999999876332 33456789999999998877 6666 999999999999999999999754331
Q ss_pred cccHHHHHHHHHhhcc-cccc----cCcccc---CccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 955 SRDLISWVIRMRQENR-ESEV----LDPFIY---DKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 955 ~~~~~~~~~~~~~~~~-~~~~----~d~~~~---~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
.... ..+..... .... ..+... ..........+.+++.+||+.||.+||+++|+++
T Consensus 259 -~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~ 322 (348)
T 2pml_X 259 -VELF---NNIRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALK 322 (348)
T ss_dssp -HHHH---HHHTSCCCCCCCSSSSSTTTTCC--------CCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred -HHHH---HHHhccCcCCccchhhhhccccccccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 1111 11111110 0000 000000 0000122346889999999999999999999987
No 258
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=100.00 E-value=5.3e-36 Score=336.68 Aligned_cols=259 Identities=22% Similarity=0.313 Sum_probs=203.0
Q ss_pred ccCCCcCCeeeccCCeEEEEEEe--CCCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCC------ccceEeeEEeccCc
Q 035998 741 TNNFDQANIIGCGGFGLVYRATL--PDGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHP------NLVHLQGYCMHKND 812 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~--~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~------niv~l~~~~~~~~~ 812 (1020)
.++|++.+.||+|+||.||+|.. .+++.||||++... ....+.+.+|+++++.++|+ +++++++++...+.
T Consensus 13 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~ 91 (339)
T 1z57_A 13 SARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNV-DRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGH 91 (339)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTE
T ss_pred cCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecC-CchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCc
Confidence 35799999999999999999986 36789999999754 33356788999999998765 49999999999999
Q ss_pred eEEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcC------------
Q 035998 813 RLLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDG------------ 880 (1020)
Q Consensus 813 ~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~------------ 880 (1020)
.++||||+ +++|.+++... ....+++..+..++.|++.||+|||++ +|+||||||+||+++.
T Consensus 92 ~~lv~e~~-~~~l~~~l~~~--~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~~~~~~ 165 (339)
T 1z57_A 92 ICIVFELL-GLSTYDFIKEN--GFLPFRLDHIRKMAYQICKSVNFLHSN---KLTHTDLKPENILFVQSDYTEAYNPKIK 165 (339)
T ss_dssp EEEEEECC-CCBHHHHHHHT--TTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCCCEEEEEC----
T ss_pred EEEEEcCC-CCCHHHHHHhc--CCCCCcHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHEEEeccccccccCCccc
Confidence 99999999 88999998764 224688999999999999999999999 9999999999999987
Q ss_pred -------CCCeEEeeccccccccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCC
Q 035998 881 -------NFGAHLADFGLARLILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPK 953 (1020)
Q Consensus 881 -------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~ 953 (1020)
++.+||+|||+++..... .....||+.|+|||++.+..++.++||||+|+++|||++|+.||......
T Consensus 166 ~~~~~~~~~~~kl~Dfg~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~ 240 (339)
T 1z57_A 166 RDERTLINPDIKVVDFGSATYDDEH-----HSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDSK 240 (339)
T ss_dssp CEEEEESCCCEEECCCSSCEETTSC-----CCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSCHH
T ss_pred cccccccCCCceEeeCcccccCccc-----cccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCCChH
Confidence 678999999999864321 23457899999999999999999999999999999999999999754322
Q ss_pred CcccHHHHHHHHHhhccc--------ccc---------------------cCc-cccCccCHHHHHHHHHHHhhccCCCC
Q 035998 954 GSRDLISWVIRMRQENRE--------SEV---------------------LDP-FIYDKQHDKEMLRVLDIACLCLSESP 1003 (1020)
Q Consensus 954 ~~~~~~~~~~~~~~~~~~--------~~~---------------------~d~-~~~~~~~~~~~~~l~~li~~cl~~dP 1003 (1020)
+.............. ... ..+ .............+.+++.+||+.||
T Consensus 241 ---~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP 317 (339)
T 1z57_A 241 ---EHLAMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDP 317 (339)
T ss_dssp ---HHHHHHHHHHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSST
T ss_pred ---HHHHHHHHHhCCCCHHHHhhccchhHHhhccccccccccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCcCc
Confidence 111111111110000 000 000 00011133456678999999999999
Q ss_pred CCCCCHHHHHH
Q 035998 1004 KVRPTTQQLVS 1014 (1020)
Q Consensus 1004 ~~RPs~~evl~ 1014 (1020)
++|||++|+++
T Consensus 318 ~~Rpt~~ell~ 328 (339)
T 1z57_A 318 AKRITLREALK 328 (339)
T ss_dssp TTSCCHHHHTT
T ss_pred ccccCHHHHhc
Confidence 99999999986
No 259
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=100.00 E-value=9.5e-36 Score=342.54 Aligned_cols=263 Identities=21% Similarity=0.245 Sum_probs=202.5
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCchhhHHHHHHHHHHHHHcC--------CCccceEeeEEe---
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCGQMEREFRAEVEALSRAQ--------HPNLVHLQGYCM--- 808 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~--------h~niv~l~~~~~--- 808 (1020)
.++|++.+.||+|+||.||+|+.. +++.||||++... ....+.+.+|++++++++ |+||+++++++.
T Consensus 36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~ 114 (397)
T 1wak_A 36 NGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA-EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISG 114 (397)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEE
T ss_pred CCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC-CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecC
Confidence 368999999999999999999864 6889999999755 334567889999999985 788999999987
Q ss_pred -ccCceEEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCC-----
Q 035998 809 -HKNDRLLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNF----- 882 (1020)
Q Consensus 809 -~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~----- 882 (1020)
.....++||||+ ++++.+++... ....+++..++.++.||+.||+|||+++ +|+||||||+||+++.++
T Consensus 115 ~~~~~~~lv~e~~-~~~l~~~~~~~--~~~~~~~~~~~~i~~qi~~aL~~lH~~~--givHrDikp~NIll~~~~~~~~~ 189 (397)
T 1wak_A 115 VNGTHICMVFEVL-GHHLLKWIIKS--NYQGLPLPCVKKIIQQVLQGLDYLHTKC--RIIHTDIKPENILLSVNEQYIRR 189 (397)
T ss_dssp TTEEEEEEEECCC-CCBHHHHHHHT--TTSCCCHHHHHHHHHHHHHHHHHHHHTT--CEECCCCSGGGEEECCCHHHHHH
T ss_pred CCCceEEEEEecc-CccHHHHHHhc--ccCCCCHHHHHHHHHHHHHHHHHHHHhC--CEecCCCCHHHeeEeccchhhhh
Confidence 556789999999 55665555543 2246899999999999999999999853 799999999999999775
Q ss_pred --------------------------------------------CeEEeeccccccccCCCCcccccccccccCccCccc
Q 035998 883 --------------------------------------------GAHLADFGLARLILSPYDTHVTTDLVGTLGYIPPEY 918 (1020)
Q Consensus 883 --------------------------------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~ 918 (1020)
.+||+|||.++..... .....||+.|+|||+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~-----~~~~~gt~~y~aPE~ 264 (397)
T 1wak_A 190 LAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKH-----FTEDIQTRQYRSLEV 264 (397)
T ss_dssp HHHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBC-----SCSCCSCGGGCCHHH
T ss_pred hhhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEecccccccccccc-----CccCCCCCcccCChh
Confidence 7999999999875322 234578999999999
Q ss_pred cCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccH---HHHHHHHHhhcc---------cccccCc---------
Q 035998 919 GQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDL---ISWVIRMRQENR---------ESEVLDP--------- 977 (1020)
Q Consensus 919 ~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~---~~~~~~~~~~~~---------~~~~~d~--------- 977 (1020)
+.+..++.++|||||||++|||++|+.||........... ............ .......
T Consensus 265 ~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (397)
T 1wak_A 265 LIGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITK 344 (397)
T ss_dssp HHTSCCCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSSCCC
T ss_pred hcCCCCCcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccCCccccccccc
Confidence 9999999999999999999999999999986554433211 111111111000 0000000
Q ss_pred -cc---------cCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 978 -FI---------YDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 978 -~~---------~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
.. ...........+.+++.+||+.||++|||++|+++
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 391 (397)
T 1wak_A 345 LKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLR 391 (397)
T ss_dssp CCCCCHHHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHT
T ss_pred cCCcchhHhhhhhcccchhhHHHHHHHHHHHhccChhhcCCHHHHhh
Confidence 00 01224566678999999999999999999999986
No 260
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=100.00 E-value=1.7e-36 Score=338.89 Aligned_cols=264 Identities=26% Similarity=0.349 Sum_probs=200.2
Q ss_pred HhccCCCcCCeeeccCCeEEEEEEe--CCCCEEEEEEecCCch--hhHHHHHHHHHHHHHc---CCCccceEeeEEe---
Q 035998 739 ESTNNFDQANIIGCGGFGLVYRATL--PDGRNVAIKRLSGDCG--QMEREFRAEVEALSRA---QHPNLVHLQGYCM--- 808 (1020)
Q Consensus 739 ~~~~~~~~~~~lg~G~~g~V~~~~~--~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l---~h~niv~l~~~~~--- 808 (1020)
...++|++.+.||+|+||.||+|+. .+++.||||++..... .....+.+|+++++.+ +||||+++++++.
T Consensus 8 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~ 87 (326)
T 1blx_A 8 RADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSR 87 (326)
T ss_dssp CGGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEE
T ss_pred CchhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeecc
Confidence 3457899999999999999999987 3678899999864321 1123456777777766 8999999999987
Q ss_pred --ccCceEEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEE
Q 035998 809 --HKNDRLLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHL 886 (1020)
Q Consensus 809 --~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl 886 (1020)
.....++||||++ |+|.+++.... ...+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||
T Consensus 88 ~~~~~~~~lv~e~~~-~~L~~~l~~~~--~~~~~~~~~~~~~~qi~~~l~~lH~~---gi~H~dlkp~Nili~~~~~~kl 161 (326)
T 1blx_A 88 TDRETKLTLVFEHVD-QDLTTYLDKVP--EPGVPTETIKDMMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIKL 161 (326)
T ss_dssp CSSEEEEEEEEECCS-CBHHHHHHHSC--TTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEE
T ss_pred cCCCceEEEEEecCC-CCHHHHHHhcc--cCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCCHHHeEEcCCCCEEE
Confidence 4567889999998 59999987652 23589999999999999999999999 9999999999999999999999
Q ss_pred eeccccccccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHH
Q 035998 887 ADFGLARLILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMR 966 (1020)
Q Consensus 887 ~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~ 966 (1020)
+|||+++.... ........|++.|+|||++.+..++.++||||+|+++|||++|+.||..... .+.........
T Consensus 162 ~Dfg~~~~~~~---~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~---~~~~~~i~~~~ 235 (326)
T 1blx_A 162 ADFGLARIYSF---QMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSD---VDQLGKILDVI 235 (326)
T ss_dssp CSCCSCCCCCG---GGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH---HHHHHHHHHHH
T ss_pred ecCcccccccC---CCCccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCH---HHHHHHHHHHc
Confidence 99999976532 2233456789999999999999999999999999999999999999975332 12222111111
Q ss_pred hhccccccc----Cc---------cccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 967 QENRESEVL----DP---------FIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 967 ~~~~~~~~~----d~---------~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
......... .+ .............+.+++.+||+.||++||+++|+++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 296 (326)
T 1blx_A 236 GLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS 296 (326)
T ss_dssp CCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred CCCCcccCccccccchhhhcccCcchhhhccccCCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 100000000 00 0000111122346789999999999999999999985
No 261
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=100.00 E-value=2.1e-36 Score=366.95 Aligned_cols=257 Identities=26% Similarity=0.377 Sum_probs=203.8
Q ss_pred hccCCCcCCeeeccCCeEEEEEEeCC----CCEEEEEEecCCc-hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceE
Q 035998 740 STNNFDQANIIGCGGFGLVYRATLPD----GRNVAIKRLSGDC-GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRL 814 (1020)
Q Consensus 740 ~~~~~~~~~~lg~G~~g~V~~~~~~~----~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 814 (1020)
..++|++.+.||+|+||.||+|.+.. +..||||++.... ....+.+.+|+.++++++||||+++++++. ++..+
T Consensus 388 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~~ 466 (656)
T 2j0j_A 388 QRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVW 466 (656)
T ss_dssp CGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCE
T ss_pred ccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-cCceE
Confidence 45678999999999999999998642 4579999987643 334467899999999999999999999985 45689
Q ss_pred EEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeecccccc
Q 035998 815 LIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARL 894 (1020)
Q Consensus 815 lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~ 894 (1020)
+||||+++|+|.+++... ...+++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++.
T Consensus 467 lv~E~~~~g~L~~~l~~~---~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDikp~NILl~~~~~vkL~DFG~a~~ 540 (656)
T 2j0j_A 467 IIMELCTLGELRSFLQVR---KFSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRY 540 (656)
T ss_dssp EEEECCTTCBHHHHHHHT---TTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCCCCCS
T ss_pred EEEEcCCCCcHHHHHHhc---cCCCCHHHHHHHHHHHHHHHHHHHhC---CccccccchHhEEEeCCCCEEEEecCCCee
Confidence 999999999999999754 24689999999999999999999999 999999999999999999999999999987
Q ss_pred ccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHc-CCCCCCCCCCCCcccHHHHHHHHHhhccccc
Q 035998 895 ILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLT-GKRPMDMCKPKGSRDLISWVIRMRQENRESE 973 (1020)
Q Consensus 895 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 973 (1020)
..... ........+++.|+|||++.+..++.++||||||+++|||++ |..||...... +.. ..+.......
T Consensus 541 ~~~~~-~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~---~~~---~~i~~~~~~~- 612 (656)
T 2j0j_A 541 MEDST-YYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNN---DVI---GRIENGERLP- 612 (656)
T ss_dssp CCC-----------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH---HHH---HHHHHTCCCC-
T ss_pred cCCCc-ceeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCHH---HHH---HHHHcCCCCC-
Confidence 64322 122233456789999999988899999999999999999997 99999753321 111 1121111110
Q ss_pred ccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhcC
Q 035998 974 VLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSII 1020 (1020)
Q Consensus 974 ~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~il 1020 (1020)
.+......+.+++.+||+.||++||+++|+++.|++++
T Consensus 613 ---------~~~~~~~~l~~li~~~l~~dP~~RPs~~el~~~L~~il 650 (656)
T 2j0j_A 613 ---------MPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTIL 650 (656)
T ss_dssp ---------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred ---------CCccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHH
Confidence 01112246889999999999999999999999998763
No 262
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1e-35 Score=341.05 Aligned_cols=311 Identities=20% Similarity=0.194 Sum_probs=183.2
Q ss_pred CCCCCcEEecCCCCCCCCCCccccCCCCCCeeeccCCCCCCCCCCcc-CCCCcceeeeccCccCCCCCccccccCCcccE
Q 035998 107 NLVQLRFLNLSHNLLKGTVPVSLVNLPNLEVLDLSSNDLSGPLPQTI-NLPSIQVLDISSNSLNGSVPTSICKNSSRIRV 185 (1020)
Q Consensus 107 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~ 185 (1020)
.++++++|++++|.++...+..|..+++|++|+|++|.+++..+..+ .+++|++|+|++|+++ .+|...+..+++|++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCE
Confidence 46778888888888773333346778888888888888877766666 6777777777777776 344444455666666
Q ss_pred EEccCCCCCCCCCCccccccccccccccccccccccchhhhhhcccccccccccccCCCCCcccccCCCccEEEccCCcC
Q 035998 186 INLSVNYFSGTLSPGLGNCASLEHLCLGMNDLTGGIADDIFQLQKLRLLGLQDNQLSGKLSPSIADLSNLVRLDVSSNNF 265 (1020)
Q Consensus 186 L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 265 (1020)
|+|++|+++...+..|+++++|++|+|++|++++..+..+..+++|++|++++|++++. .+..+++|++|++++|.+
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence 66666666643333456666666666666666655555555566666666666665533 234455566666666655
Q ss_pred cccCcccccCCcccceeecccccccccCCCCCcCCcccccccccccccccccccCCCCCCCcCEEEcCCCccCCCCCCCC
Q 035998 266 SGNIPDVFAGLGEFQYLVAHSNRFTGRIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNKFNGPLPTNL 345 (1020)
Q Consensus 266 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l 345 (1020)
++. ....+|+.|++++|+++.. ... ..++|++|++++|++++. ..+
T Consensus 199 ~~~-----~~~~~L~~L~l~~n~l~~~------------------------~~~---~~~~L~~L~l~~n~l~~~--~~l 244 (390)
T 3o6n_A 199 STL-----AIPIAVEELDASHNSINVV------------------------RGP---VNVELTILKLQHNNLTDT--AWL 244 (390)
T ss_dssp SEE-----ECCSSCSEEECCSSCCCEE------------------------ECC---CCSSCCEEECCSSCCCCC--GGG
T ss_pred ccc-----CCCCcceEEECCCCeeeec------------------------ccc---ccccccEEECCCCCCccc--HHH
Confidence 431 1223444444444444432 111 124455555555555432 244
Q ss_pred CCCCCCCeEecCCCcccccCcccccCCCCCCeeeCCCCCCcchhhHHHHHhhhcccchhhhhccccCCCCCCCccccccC
Q 035998 346 PRCRKLKNINLARNNFSGQIPETYKNFESLSYLSLSNSSIYNLSSALQVLQQCRNLTTLVLTLNFRNEKLPTDPRLHFAN 425 (1020)
Q Consensus 346 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~i~~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 425 (1020)
..+++|++|+|++|++++..|..|..+++|++|++++|+++.++.. ...+++
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----------------------------~~~l~~ 296 (390)
T 3o6n_A 245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY----------------------------GQPIPT 296 (390)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECS----------------------------SSCCTT
T ss_pred cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcc----------------------------cCCCCC
Confidence 4555555555555555555555555555555555555554443321 012334
Q ss_pred ceEEEecccccccccchhhhcCCCCcEEecccccccccccccccCcCcCcEEeCCCCccccc
Q 035998 426 LKVLVIASCGLRGSIPQWLRGCSKLQLVDLSWNQLSGTIPVWFGGFQDLFYLDLSNNTFTGE 487 (1020)
Q Consensus 426 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 487 (1020)
|+.|++++|.+. .+|..+..+++|+.|+|++|+|++. | +..+++|++|+|++|++++.
T Consensus 297 L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 297 LKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred CCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccch
Confidence 455555555554 3455567778888888888888743 3 67788888999999988753
No 263
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=7.1e-36 Score=361.38 Aligned_cols=334 Identities=22% Similarity=0.227 Sum_probs=255.4
Q ss_pred cccccccccccccccccccchhhhhhcccccccccccccCCCCCcccccCCCccEEEccCCcCcccCcccccCCccccee
Q 035998 203 NCASLEHLCLGMNDLTGGIADDIFQLQKLRLLGLQDNQLSGKLSPSIADLSNLVRLDVSSNNFSGNIPDVFAGLGEFQYL 282 (1020)
Q Consensus 203 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 282 (1020)
.+++++.|++++|.++...+..+..+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..|..|+++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 46788999999999997777778889999999999999998888899999999999999999998888889999999999
Q ss_pred ecccccccccCCCCCcCCcccccccccccccccccccCCCCCCCcCEEEcCCCccCCCCCCCCCCCCCCCeEecCCCccc
Q 035998 283 VAHSNRFTGRIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNKFNGPLPTNLPRCRKLKNINLARNNFS 362 (1020)
Q Consensus 283 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 362 (1020)
+|++|++++..+..|+++++|++|+|++|.+++..+..|..+++|++|+|++|++++.. +..+++|+.|++++|.++
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence 99999999777777888899999999999998888888888889999999999888642 556778888888888887
Q ss_pred ccCcccccCCCCCCeeeCCCCCCcchhhHHHHHhhhcccchhhhhccccCCCCCCCccccccCceEEEecccccccccch
Q 035998 363 GQIPETYKNFESLSYLSLSNSSIYNLSSALQVLQQCRNLTTLVLTLNFRNEKLPTDPRLHFANLKVLVIASCGLRGSIPQ 442 (1020)
Q Consensus 363 ~~~p~~~~~l~~L~~L~l~~N~i~~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~ 442 (1020)
+. ....+|+.|++++|.+..++.. ..++|+.|++++|.+++ +.
T Consensus 206 ~l-----~~~~~L~~L~ls~n~l~~~~~~------------------------------~~~~L~~L~L~~n~l~~--~~ 248 (597)
T 3oja_B 206 TL-----AIPIAVEELDASHNSINVVRGP------------------------------VNVELTILKLQHNNLTD--TA 248 (597)
T ss_dssp EE-----ECCTTCSEEECCSSCCCEEECS------------------------------CCSCCCEEECCSSCCCC--CG
T ss_pred cc-----cCCchhheeeccCCcccccccc------------------------------cCCCCCEEECCCCCCCC--Ch
Confidence 52 3456788888888887655421 11345555555555554 24
Q ss_pred hhhcCCCCcEEecccccccccccccccCcCcCcEEeCCCCcccccCCCCCCCCcccccccCcCCCCCCCcccceeecccc
Q 035998 443 WLRGCSKLQLVDLSWNQLSGTIPVWFGGFQDLFYLDLSNNTFTGEIPKNLTGLPSLITRNISLEEPSPDFPFFMRRNVSA 522 (1020)
Q Consensus 443 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~s~~~~~~~~~~~~~~~~~~ 522 (1020)
++..+++|+.|+|++|++++.+|..|+.+++|++|+|++|+++
T Consensus 249 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~------------------------------------- 291 (597)
T 3oja_B 249 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV------------------------------------- 291 (597)
T ss_dssp GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC-------------------------------------
T ss_pred hhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC-------------------------------------
Confidence 5555666666666666666555555666666666666665554
Q ss_pred cccccccccCCCCeeecccCccccCCCccccCCCcceEEEecCCcceeccCccccCCCcccEEEccCCcccccCCccccc
Q 035998 523 RGLQYNQIWSFPPTIDLSLNRLDGSIWPEFGNLKKLHVFDLKHNNLSGPIPSELTGMTSLETLDLSYNNLSGAIPISLEK 602 (1020)
Q Consensus 523 ~~l~~n~~~~~~~~l~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~ 602 (1020)
+ +|..++.+++|+.|+|++|+++ .+|..++.+++|+.|+|++|+|++. | +..
T Consensus 292 -----------------------~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~ 343 (597)
T 3oja_B 292 -----------------------A-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LST 343 (597)
T ss_dssp -----------------------E-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCT
T ss_pred -----------------------C-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhh
Confidence 3 2334556778889999999998 6888888899999999999999854 3 677
Q ss_pred cccccccccccccccccCCCCCCCCCcCCccccCCC-CCCC
Q 035998 603 LSFLSKFSVANNHLTGRIPSGGQFQTFPNSSFDGNN-LCGE 642 (1020)
Q Consensus 603 l~~L~~l~ls~N~l~g~~p~~~~~~~~~~~~~~~n~-l~~~ 642 (1020)
+++|+.|++++|++++..+. ..+..+....+.++. .|+.
T Consensus 344 ~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~ 383 (597)
T 3oja_B 344 HHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKI 383 (597)
T ss_dssp TCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCT
T ss_pred cCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCc
Confidence 88999999999999875432 234556666677775 7775
No 264
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=9.9e-36 Score=342.69 Aligned_cols=266 Identities=24% Similarity=0.329 Sum_probs=182.1
Q ss_pred CCCc-CCeeeccCCeEEEEEEeC---CCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCccceEeeEEec--cCceEEE
Q 035998 743 NFDQ-ANIIGCGGFGLVYRATLP---DGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNLVHLQGYCMH--KNDRLLI 816 (1020)
Q Consensus 743 ~~~~-~~~lg~G~~g~V~~~~~~---~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--~~~~~lv 816 (1020)
.|++ .++||+|+||.||+|+++ +++.||||++..... ...+.+|++++++++||||+++++++.. ....++|
T Consensus 21 ~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~--~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~lv 98 (405)
T 3rgf_A 21 LFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGI--SMSACREIALLRELKHPNVISLQKVFLSHADRKVWLL 98 (405)
T ss_dssp HEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSSC--CHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEEE
T ss_pred hhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCC--CHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEEE
Confidence 3555 568999999999999965 578899999976532 3467899999999999999999999954 6678999
Q ss_pred EEeccCCChhhhhhhcC-----CCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEE----cCCCCeEEe
Q 035998 817 YSFMENGSLDYWLHEKL-----DGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILL----DGNFGAHLA 887 (1020)
Q Consensus 817 ~e~~~~g~L~~~l~~~~-----~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll----~~~~~~kl~ 887 (1020)
|||+++ +|.+++.... .....+++..++.++.||+.||+|||+. +|+||||||+||++ +.++.+||+
T Consensus 99 ~e~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kl~ 174 (405)
T 3rgf_A 99 FDYAEH-DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHAN---WVLHRDLKPANILVMGEGPERGRVKIA 174 (405)
T ss_dssp EECCSE-EHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECCSSTTTTCEEEC
T ss_pred EeCCCC-CHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CEeCCCcCHHHeEEecCCCCCCcEEEE
Confidence 999975 7777765321 1223589999999999999999999999 99999999999999 678899999
Q ss_pred eccccccccCCCCc-ccccccccccCccCccccCC-CCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCC------cccHH
Q 035998 888 DFGLARLILSPYDT-HVTTDLVGTLGYIPPEYGQA-SVATYKGDVYSFGVVLLELLTGKRPMDMCKPKG------SRDLI 959 (1020)
Q Consensus 888 Dfg~~~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~------~~~~~ 959 (1020)
|||+++........ .......||+.|+|||++.+ ..++.++||||+||++|||++|+.||....... ..+.+
T Consensus 175 Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~~~~~l 254 (405)
T 3rgf_A 175 DMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQL 254 (405)
T ss_dssp CTTCCC----------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCCC------CCCCHHHH
T ss_pred ECCCceecCCCCcccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCccccccccccchHHHH
Confidence 99999876433211 22344678999999998877 458999999999999999999999997543311 01111
Q ss_pred HHHHHHHhhcccccccC---------------ccccCccCH---------HHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 960 SWVIRMRQENRESEVLD---------------PFIYDKQHD---------KEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 960 ~~~~~~~~~~~~~~~~d---------------~~~~~~~~~---------~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
................+ ......... .....+.+|+.+||+.||.+|||++|+++
T Consensus 255 ~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~L~~dP~~R~ta~e~L~ 333 (405)
T 3rgf_A 255 DRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQAMQ 333 (405)
T ss_dssp HHHHHHHCCCCTTTCGGGGGSTTHHHHHHHCCGGGGTTCCHHHHHHTTTCCTTSHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHHHHhhCCCChhhcchhhcCcchhhhhhhccccCCCcchhhhhHhhcCCCCCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence 11111111000000000 000000000 00235789999999999999999999987
No 265
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.1e-35 Score=340.77 Aligned_cols=331 Identities=22% Similarity=0.244 Sum_probs=194.4
Q ss_pred cccccccccccccccccchhhhhhcccccccccccccCCCCCcccccCCCccEEEccCCcCcccCcccccCCcccceeec
Q 035998 205 ASLEHLCLGMNDLTGGIADDIFQLQKLRLLGLQDNQLSGKLSPSIADLSNLVRLDVSSNNFSGNIPDVFAGLGEFQYLVA 284 (1020)
Q Consensus 205 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 284 (1020)
++++.|++++|.++...+..+..+++|++|+|++|++++..+..|..+++|++|+|++|.+++..|..|+++++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 44444555555554333333445555555555555555444445555555555555555555555555555555555555
Q ss_pred ccccccccCCCCCcCCcccccccccccccccccccCCCCCCCcCEEEcCCCccCCCCCCCCCCCCCCCeEecCCCccccc
Q 035998 285 HSNRFTGRIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNKFNGPLPTNLPRCRKLKNINLARNNFSGQ 364 (1020)
Q Consensus 285 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 364 (1020)
++|+++...+..|.++++|++|++++|.+++..+..+..+++|++|++++|++++. .+..+++|+.|++++|.+++.
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~ 201 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL 201 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc
Confidence 55555544444445555555566665555555555555566666666666666533 244455666666666665532
Q ss_pred CcccccCCCCCCeeeCCCCCCcchhhHHHHHhhhcccchhhhhccccCCCCCCCccccccCceEEEecccccccccchhh
Q 035998 365 IPETYKNFESLSYLSLSNSSIYNLSSALQVLQQCRNLTTLVLTLNFRNEKLPTDPRLHFANLKVLVIASCGLRGSIPQWL 444 (1020)
Q Consensus 365 ~p~~~~~l~~L~~L~l~~N~i~~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l 444 (1020)
...++|+.|++++|.+..++.. .+++|+.|++++|.+.+. .++
T Consensus 202 -----~~~~~L~~L~l~~n~l~~~~~~------------------------------~~~~L~~L~l~~n~l~~~--~~l 244 (390)
T 3o6n_A 202 -----AIPIAVEELDASHNSINVVRGP------------------------------VNVELTILKLQHNNLTDT--AWL 244 (390)
T ss_dssp -----ECCSSCSEEECCSSCCCEEECC------------------------------CCSSCCEEECCSSCCCCC--GGG
T ss_pred -----CCCCcceEEECCCCeeeecccc------------------------------ccccccEEECCCCCCccc--HHH
Confidence 2334566666666665544321 113444555555555432 356
Q ss_pred hcCCCCcEEecccccccccccccccCcCcCcEEeCCCCcccccCCCCCCCCcccccccCcCCCCCCCcccceeecccccc
Q 035998 445 RGCSKLQLVDLSWNQLSGTIPVWFGGFQDLFYLDLSNNTFTGEIPKNLTGLPSLITRNISLEEPSPDFPFFMRRNVSARG 524 (1020)
Q Consensus 445 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~s~~~~~~~~~~~~~~~~~~~~ 524 (1020)
..+++|++|+|++|++++..|..|..+++|++|+|++|++++ +
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~------------------------------------ 287 (390)
T 3o6n_A 245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-L------------------------------------ 287 (390)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-E------------------------------------
T ss_pred cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-c------------------------------------
Confidence 666777777777777776666777777777777777776653 2
Q ss_pred cccccccCCCCeeecccCccccCCCccccCCCcceEEEecCCcceeccCccccCCCcccEEEccCCcccccCCccccccc
Q 035998 525 LQYNQIWSFPPTIDLSLNRLDGSIWPEFGNLKKLHVFDLKHNNLSGPIPSELTGMTSLETLDLSYNNLSGAIPISLEKLS 604 (1020)
Q Consensus 525 l~~n~~~~~~~~l~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~ 604 (1020)
|..++.+++|++|+|++|+++ .+|..++.+++|++|+|++|+|++ +| +..++
T Consensus 288 ------------------------~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~-~~--~~~~~ 339 (390)
T 3o6n_A 288 ------------------------NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LSTHH 339 (390)
T ss_dssp ------------------------ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTC
T ss_pred ------------------------CcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccce-eC--chhhc
Confidence 223445667888888888887 577778888888888888888874 44 67778
Q ss_pred cccccccccccccccCCCCCCCCCcCCccccCCC-CCC
Q 035998 605 FLSKFSVANNHLTGRIPSGGQFQTFPNSSFDGNN-LCG 641 (1020)
Q Consensus 605 ~L~~l~ls~N~l~g~~p~~~~~~~~~~~~~~~n~-l~~ 641 (1020)
+|+.|++++|++++.-.. ..+..+....+.++. .|+
T Consensus 340 ~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~ 376 (390)
T 3o6n_A 340 TLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCK 376 (390)
T ss_dssp CCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCC
T ss_pred cCCEEEcCCCCccchhHH-HHHHHHHhhcccccCceec
Confidence 888888888888763221 223444445555554 454
No 266
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=100.00 E-value=1.4e-35 Score=332.13 Aligned_cols=255 Identities=22% Similarity=0.320 Sum_probs=173.9
Q ss_pred ccCCCcCC-eeeccCCeEEEEEEeC-CCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCccceEeeEEec----cCceE
Q 035998 741 TNNFDQAN-IIGCGGFGLVYRATLP-DGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNLVHLQGYCMH----KNDRL 814 (1020)
Q Consensus 741 ~~~~~~~~-~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~----~~~~~ 814 (1020)
.++|.+.+ +||+|+||.||+|+.. +++.||||++.... ....+....++.++||||+++++++.. ....+
T Consensus 27 ~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~ 102 (336)
T 3fhr_A 27 TDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSP----KARQEVDHHWQASGGPHIVCILDVYENMHHGKRCLL 102 (336)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESSH----HHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEE
T ss_pred cceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCcH----HHHHHHHHHHHhcCCCChHHHHHHHhhccCCCceEE
Confidence 46788854 6999999999999876 68999999997642 112222334566799999999999876 44578
Q ss_pred EEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcC---CCCeEEeeccc
Q 035998 815 LIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDG---NFGAHLADFGL 891 (1020)
Q Consensus 815 lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~---~~~~kl~Dfg~ 891 (1020)
+||||+++|+|.+++... ....+++.+++.++.|++.||+|||++ +|+||||||+||+++. ++.+||+|||+
T Consensus 103 lv~e~~~gg~L~~~l~~~--~~~~l~~~~~~~i~~ql~~~l~~LH~~---~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~ 177 (336)
T 3fhr_A 103 IIMECMEGGELFSRIQER--GDQAFTEREAAEIMRDIGTAIQFLHSH---NIAHRDVKPENLLYTSKEKDAVLKLTDFGF 177 (336)
T ss_dssp EEEECCTTEEHHHHHHTC---CCCCBHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTCCEEECCCTT
T ss_pred EEEeccCCCCHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEEecCCCceEEEecccc
Confidence 999999999999999864 234689999999999999999999999 9999999999999976 45599999999
Q ss_pred cccccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhccc
Q 035998 892 ARLILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRE 971 (1020)
Q Consensus 892 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~ 971 (1020)
++..... ......||+.|+|||++.+..++.++||||+|+++|+|++|+.||.............. ......
T Consensus 178 ~~~~~~~----~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~--~~~~~~-- 249 (336)
T 3fhr_A 178 AKETTQN----ALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPGMKR--RIRLGQ-- 249 (336)
T ss_dssp CEEC--------------------------CHHHHHHHHHHHHHHHHHHHHSSCCC------------------------
T ss_pred ceecccc----ccccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhhhHHH--hhhccc--
Confidence 9865322 22345789999999999888999999999999999999999999975433221111100 000000
Q ss_pred ccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH--HHH
Q 035998 972 SEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS--WLD 1017 (1020)
Q Consensus 972 ~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~--~L~ 1017 (1020)
.....+ . .......+.+++.+||+.||.+|||++|+++ +++
T Consensus 250 ~~~~~~-~----~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~ 292 (336)
T 3fhr_A 250 YGFPNP-E----WSEVSEDAKQLIRLLLKTDPTERLTITQFMNHPWIN 292 (336)
T ss_dssp -CCCTT-T----STTCCHHHHHHHHHHSCSSGGGSCCHHHHHHSHHHH
T ss_pred cccCch-h----hccCCHHHHHHHHHHCCCChhHCcCHHHHhcCcccc
Confidence 000000 0 0112246889999999999999999999998 554
No 267
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=100.00 E-value=4.8e-36 Score=340.85 Aligned_cols=255 Identities=22% Similarity=0.297 Sum_probs=194.8
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc--hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCce----
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC--GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDR---- 813 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 813 (1020)
.++|.+.+.||+|+||.||+|... +|+.||||++.... ....+.+.+|+++++.++||||+++++++...+..
T Consensus 41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 120 (371)
T 4exu_A 41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 120 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCC
T ss_pred cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccce
Confidence 468999999999999999999865 68899999997643 23356788999999999999999999999877654
Q ss_pred --EEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccc
Q 035998 814 --LLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGL 891 (1020)
Q Consensus 814 --~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~ 891 (1020)
++||||++ ++|.+++.. .+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+
T Consensus 121 ~~~lv~e~~~-~~l~~~~~~------~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kL~Dfg~ 190 (371)
T 4exu_A 121 DFYLVMPFMQ-TDLQKIMGM------EFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCELKILDFGL 190 (371)
T ss_dssp CCEEEEECCC-EEHHHHTTS------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECSTTC
T ss_pred eEEEEEcccc-ccHHHHhhc------CCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCcCHHHeEECCCCCEEEEecCc
Confidence 99999997 577776642 489999999999999999999999 999999999999999999999999999
Q ss_pred cccccCCCCcccccccccccCccCccccCC-CCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcc
Q 035998 892 ARLILSPYDTHVTTDLVGTLGYIPPEYGQA-SVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENR 970 (1020)
Q Consensus 892 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~ 970 (1020)
++..... .....||+.|+|||++.+ ..++.++||||+||++|||++|+.||..... .+.............
T Consensus 191 a~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~---~~~~~~i~~~~~~~~ 262 (371)
T 4exu_A 191 ARHADAE-----MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDY---LDQLTQILKVTGVPG 262 (371)
T ss_dssp C-------------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSH---HHHHHHHHHHHCCCC
T ss_pred ccccccC-----cCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCh---HHHHHHHHHHhCCCc
Confidence 9865322 234578999999998877 7899999999999999999999999975322 111111111100000
Q ss_pred ------------------cccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 971 ------------------ESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 971 ------------------~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
........ .....+.....+.+++.+||+.||++|||++|+++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 323 (371)
T 4exu_A 263 TEFVQKLNDKAAKSYIQSLPQTPRKD-FTQLFPRASPQAADLLEKMLELDVDKRLTAAQALT 323 (371)
T ss_dssp HHHHTTCSCHHHHHHHHHSCCCCCCC-HHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred HHHHHHhhhhhhhhhhhccCCCcchh-HHHhccccChHHHHHHHHHCCCChhhcCCHHHHhc
Confidence 00000000 00001112346889999999999999999999986
No 268
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=100.00 E-value=1.7e-35 Score=337.92 Aligned_cols=200 Identities=25% Similarity=0.318 Sum_probs=170.9
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCchhhHHHHHHHHHHHHHcC-CC-----ccceEeeEEeccCce
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCGQMEREFRAEVEALSRAQ-HP-----NLVHLQGYCMHKNDR 813 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~-----niv~l~~~~~~~~~~ 813 (1020)
.++|++.+.||+|+||.||+|+.. +++.||||++.... ....++.+|+++++.++ |+ +|+++++++...+..
T Consensus 53 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~ 131 (382)
T 2vx3_A 53 MDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKK-AFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNHL 131 (382)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSSH-HHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETTEE
T ss_pred eeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEeccH-HHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCCce
Confidence 468999999999999999999865 67889999997542 33566788999988885 55 499999999999999
Q ss_pred EEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEc--CCCCeEEeeccc
Q 035998 814 LLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLD--GNFGAHLADFGL 891 (1020)
Q Consensus 814 ~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~--~~~~~kl~Dfg~ 891 (1020)
++||||++ ++|.+++.... ...+++..+..++.|++.||+|||.+ +.+|+||||||+||+++ .++.+||+|||+
T Consensus 132 ~lv~e~~~-~~L~~~l~~~~--~~~~~~~~~~~i~~qi~~al~~lH~~-~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~ 207 (382)
T 2vx3_A 132 CLVFEMLS-YNLYDLLRNTN--FRGVSLNLTRKFAQQMCTALLFLATP-ELSIIHCDLKPENILLCNPKRSAIKIVDFGS 207 (382)
T ss_dssp EEEEECCC-CBHHHHHHHTT--TSCCCHHHHHHHHHHHHHHHHHHTST-TTCEECCCCSGGGEEESSTTSCCEEECCCTT
T ss_pred EEEEecCC-CCHHHHHhhcC--cCCCCHHHHHHHHHHHHHHHHHhccC-CCCEEcCCCCcccEEEecCCCCcEEEEeccC
Confidence 99999996 49999987642 24589999999999999999999953 23899999999999995 578899999999
Q ss_pred cccccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCC
Q 035998 892 ARLILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMC 950 (1020)
Q Consensus 892 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~ 950 (1020)
++..... .....||+.|+|||++.+..++.++||||+||++|||++|+.||...
T Consensus 208 a~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~ 261 (382)
T 2vx3_A 208 SCQLGQR-----IYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGA 261 (382)
T ss_dssp CEETTCC-----CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred ceecccc-----cccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 9876332 23457899999999999999999999999999999999999999754
No 269
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.9e-35 Score=357.59 Aligned_cols=268 Identities=19% Similarity=0.203 Sum_probs=153.0
Q ss_pred CCCCcEEecCCCCCCCCCCccccCCCCCCeeeccCCCCCCCCCCcc-CCCCcceeeeccCccCCCCCccccccCCcccEE
Q 035998 108 LVQLRFLNLSHNLLKGTVPVSLVNLPNLEVLDLSSNDLSGPLPQTI-NLPSIQVLDISSNSLNGSVPTSICKNSSRIRVI 186 (1020)
Q Consensus 108 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L 186 (1020)
+++++.|++++|.++...+..|.++++|++|+|++|.|++.+|..+ .+++|++|+|++|.++ .+|...+..+++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCEE
Confidence 4455555555555553333334555555555555555555555444 4555555555555555 2333333455555555
Q ss_pred EccCCCCCCCCCCccccccccccccccccccccccchhhhhhcccccccccccccCCCCCcccccCCCccEEEccCCcCc
Q 035998 187 NLSVNYFSGTLSPGLGNCASLEHLCLGMNDLTGGIADDIFQLQKLRLLGLQDNQLSGKLSPSIADLSNLVRLDVSSNNFS 266 (1020)
Q Consensus 187 ~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 266 (1020)
+|++|.+++..+..|+++++|++|+|++|.+++..|..|..+++|++|+|++|++++. .+..+++|+.|++++|.++
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccc
Confidence 5555555544444445555555555555555555555555555566666666655543 1344555666666666555
Q ss_pred ccCcccccCCcccceeecccccccccCCCCCcCCcccccccccccccccccccCCCCCCCcCEEEcCCCccCCCCCCCCC
Q 035998 267 GNIPDVFAGLGEFQYLVAHSNRFTGRIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNKFNGPLPTNLP 346 (1020)
Q Consensus 267 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 346 (1020)
+. ....+|+.|++++|.++...+... ++|+.|+|++|.+++. ..+..+++|++|+|++|.+++.+|..|.
T Consensus 206 ~l-----~~~~~L~~L~ls~n~l~~~~~~~~---~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 275 (597)
T 3oja_B 206 TL-----AIPIAVEELDASHNSINVVRGPVN---VELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV 275 (597)
T ss_dssp EE-----ECCTTCSEEECCSSCCCEEECSCC---SCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred cc-----cCCchhheeeccCCcccccccccC---CCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhc
Confidence 32 223456666666666654433222 4566666666666642 4455666777777777777766666677
Q ss_pred CCCCCCeEecCCCcccccCcccccCCCCCCeeeCCCCCCcchhh
Q 035998 347 RCRKLKNINLARNNFSGQIPETYKNFESLSYLSLSNSSIYNLSS 390 (1020)
Q Consensus 347 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~i~~l~~ 390 (1020)
.+++|+.|+|++|++++ +|..+..+++|++|+|++|.++.+|.
T Consensus 276 ~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i~~ 318 (597)
T 3oja_B 276 KMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVER 318 (597)
T ss_dssp TCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCCCGG
T ss_pred CccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCccCc
Confidence 77777777777777765 45555667777777777777665554
No 270
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=100.00 E-value=1.3e-35 Score=330.65 Aligned_cols=265 Identities=23% Similarity=0.326 Sum_probs=194.3
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCccceEeeEEe-----------
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNLVHLQGYCM----------- 808 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~----------- 808 (1020)
.++|++.+.||+|+||.||+|... +++.||||++........+.+.+|++++++++||||+++++++.
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~ 89 (320)
T 2i6l_A 10 GSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVG 89 (320)
T ss_dssp TTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC---
T ss_pred CCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccccc
Confidence 467999999999999999999876 48899999998766666678899999999999999999999874
Q ss_pred ---ccCceEEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEc-CCCCe
Q 035998 809 ---HKNDRLLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLD-GNFGA 884 (1020)
Q Consensus 809 ---~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~-~~~~~ 884 (1020)
+....++||||++ |+|.+++.. ..+++..++.++.|++.||+|||++ +|+||||||+||+++ .++.+
T Consensus 90 ~~~~~~~~~lv~e~~~-~~L~~~~~~-----~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~ 160 (320)
T 2i6l_A 90 SLTELNSVYIVQEYME-TDLANVLEQ-----GPLLEEHARLFMYQLLRGLKYIHSA---NVLHRDLKPANLFINTEDLVL 160 (320)
T ss_dssp -CCSCSEEEEEEECCS-EEHHHHHTT-----CCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTTEE
T ss_pred cccccCceeEEeeccC-CCHHHHhhc-----CCccHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCCeE
Confidence 3356789999998 599988864 3588999999999999999999999 999999999999997 56799
Q ss_pred EEeeccccccccCCCC-cccccccccccCccCccccCC-CCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHH
Q 035998 885 HLADFGLARLILSPYD-THVTTDLVGTLGYIPPEYGQA-SVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWV 962 (1020)
Q Consensus 885 kl~Dfg~~~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~ 962 (1020)
||+|||+++....... ........++..|+|||.+.+ ..++.++||||+|+++|||++|+.||...... ......
T Consensus 161 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~---~~~~~~ 237 (320)
T 2i6l_A 161 KIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHEL---EQMQLI 237 (320)
T ss_dssp EECCCTTCBCC--------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHH---HHHHHH
T ss_pred EEccCccccccCCCcccccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCHH---HHHHHH
Confidence 9999999987643211 112234567889999997754 78899999999999999999999999754321 111111
Q ss_pred HHHHhh----------ccccc-----ccCcc-ccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH--HHH
Q 035998 963 IRMRQE----------NRESE-----VLDPF-IYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS--WLD 1017 (1020)
Q Consensus 963 ~~~~~~----------~~~~~-----~~d~~-~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~--~L~ 1017 (1020)
...... ..... ...+. ......+.....+.+++.+||+.||++|||++|+++ +++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~ 310 (320)
T 2i6l_A 238 LESIPVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEALSHPYMS 310 (320)
T ss_dssp HHHSCCCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHTSHHHH
T ss_pred HHhcCCCchhhhhhhhhcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhCCcccc
Confidence 100000 00000 00000 000001112346889999999999999999999987 444
No 271
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=100.00 E-value=3.6e-36 Score=335.06 Aligned_cols=258 Identities=25% Similarity=0.360 Sum_probs=199.5
Q ss_pred HHhccCCCcCCeeeccCCeEEEEEEeCCCCEEEEEEecCCch--hhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEE
Q 035998 738 LESTNNFDQANIIGCGGFGLVYRATLPDGRNVAIKRLSGDCG--QMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLL 815 (1020)
Q Consensus 738 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 815 (1020)
....++|++.+.||+|+||.||+|+.+. .||+|++..... ...+.+.+|++++++++||||+++++++.+.+..++
T Consensus 29 ~i~~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~i 106 (319)
T 2y4i_B 29 DIPFEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAI 106 (319)
T ss_dssp SSCCSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCEEE
T ss_pred cCCHHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCceEE
Confidence 3346789999999999999999998753 599999875431 223457789999999999999999999999999999
Q ss_pred EEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccc
Q 035998 816 IYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLI 895 (1020)
Q Consensus 816 v~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~ 895 (1020)
||||+++++|.+++... ...+++..++.++.|++.||+|||++ +|+||||||+||+++ ++.+||+|||+++..
T Consensus 107 v~e~~~~~~L~~~l~~~---~~~~~~~~~~~i~~qi~~al~~lH~~---~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~ 179 (319)
T 2y4i_B 107 ITSLCKGRTLYSVVRDA---KIVLDVNKTRQIAQEIVKGMGYLHAK---GILHKDLKSKNVFYD-NGKVVITDFGLFSIS 179 (319)
T ss_dssp ECBCCCSEEHHHHTTSS---CCCCCSHHHHHHHHHHHHHHHHHHHT---TCCCCCCCSTTEEEC---CCEECCCSCCC--
T ss_pred EeecccCCcHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHHhC---CccccCCChhhEEEe-CCCEEEeecCCcccc
Confidence 99999999999998753 34688999999999999999999999 999999999999998 679999999998765
Q ss_pred cCCC---CcccccccccccCccCccccCC---------CCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHH
Q 035998 896 LSPY---DTHVTTDLVGTLGYIPPEYGQA---------SVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVI 963 (1020)
Q Consensus 896 ~~~~---~~~~~~~~~gt~~y~aPE~~~~---------~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~ 963 (1020)
.... .........|++.|+|||++.+ ..++.++||||||+++|||++|+.||...... ....
T Consensus 180 ~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~------~~~~ 253 (319)
T 2y4i_B 180 GVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPAE------AIIW 253 (319)
T ss_dssp --------CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCCHH------HHHH
T ss_pred ccccccccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH------HHHH
Confidence 3211 1122234568899999998764 45789999999999999999999999743211 1111
Q ss_pred HHHhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 964 RMRQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 964 ~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
....... ...... .. ...+.+++.+||+.||++|||++++++.|+++
T Consensus 254 ~~~~~~~-~~~~~~----~~----~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~l 300 (319)
T 2y4i_B 254 QMGTGMK-PNLSQI----GM----GKEISDILLFCWAFEQEERPTFTKLMDMLEKL 300 (319)
T ss_dssp HHHTTCC-CCCCCS----SC----CTTHHHHHHHHHCSSTTTSCCHHHHHHHHTTC
T ss_pred HhccCCC-CCCCcC----CC----CHHHHHHHHHHhcCChhhCcCHHHHHHHHHHH
Confidence 1111111 111100 11 12478999999999999999999999999876
No 272
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=100.00 E-value=3.1e-35 Score=322.12 Aligned_cols=254 Identities=24% Similarity=0.363 Sum_probs=202.7
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc--hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC--GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIY 817 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 817 (1020)
.++|++.+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 21 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 100 (287)
T 2wei_A 21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVG 100 (287)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEEEE
Confidence 467999999999999999999875 68999999986543 234567889999999999999999999999999999999
Q ss_pred EeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCC---CCeEEeecccccc
Q 035998 818 SFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGN---FGAHLADFGLARL 894 (1020)
Q Consensus 818 e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~---~~~kl~Dfg~~~~ 894 (1020)
||+++++|.+++... ..+++..++.++.|++.||+|||+. +++||||||+||+++.+ +.+||+|||+++.
T Consensus 101 e~~~~~~L~~~l~~~----~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~ 173 (287)
T 2wei_A 101 ELYTGGELFDEIIKR----KRFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKDCDIKIIDFGLSTC 173 (287)
T ss_dssp CCCCSCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEEECSTTGGGT
T ss_pred EccCCCCHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCChhhEEEecCCCcccEEEeccCccee
Confidence 999999999888764 3689999999999999999999999 99999999999999754 4699999999987
Q ss_pred ccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccccc
Q 035998 895 ILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEV 974 (1020)
Q Consensus 895 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 974 (1020)
..... ......+++.|+|||.+.+. ++.++||||+|+++|+|++|+.||..... .+ ............
T Consensus 174 ~~~~~---~~~~~~~~~~y~aPE~~~~~-~~~~~Di~slG~~l~~l~~g~~p~~~~~~---~~---~~~~~~~~~~~~-- 241 (287)
T 2wei_A 174 FQQNT---KMKDRIGTAYYIAPEVLRGT-YDEKCDVWSAGVILYILLSGTPPFYGKNE---YD---ILKRVETGKYAF-- 241 (287)
T ss_dssp BCCCS---SCSCHHHHHTTCCHHHHTTC-CCTHHHHHHHHHHHHHHHHSSCSSCCSSH---HH---HHHHHHHCCCCC--
T ss_pred ecCCC---ccccccCcccccChHHhcCC-CCCchhhHhHHHHHHHHHhCCCCCCCCCH---HH---HHHHHHcCCCCC--
Confidence 64322 22334578999999988764 88999999999999999999999975321 11 111121111100
Q ss_pred cCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH--HHHh
Q 035998 975 LDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS--WLDS 1018 (1020)
Q Consensus 975 ~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~--~L~~ 1018 (1020)
+...... ....+.+++.+||+.||++|||++|+++ ++++
T Consensus 242 -~~~~~~~----~~~~~~~li~~~l~~dp~~Rps~~ell~hp~~~~ 282 (287)
T 2wei_A 242 -DLPQWRT----ISDDAKDLIRKMLTFHPSLRITATQCLEHPWIQK 282 (287)
T ss_dssp -CSGGGTT----SCHHHHHHHHHHTCSSGGGSCCHHHHHHSHHHHH
T ss_pred -Cchhhhh----cCHHHHHHHHHHcccChhhCcCHHHHhcCHHHhc
Confidence 0000011 1235889999999999999999999998 5554
No 273
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=100.00 E-value=3.5e-35 Score=332.02 Aligned_cols=262 Identities=23% Similarity=0.312 Sum_probs=198.1
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc-hhhHHHHHHHHHHHHHcCCCccceEeeEEecc-----Cce
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC-GQMEREFRAEVEALSRAQHPNLVHLQGYCMHK-----NDR 813 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-----~~~ 813 (1020)
.++|++.+.||+|+||.||+|+.. +|+.||||++.... ......+.+|++++++++||||+++++++... ...
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 89 (353)
T 2b9h_A 10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEV 89 (353)
T ss_dssp CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCE
T ss_pred ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceE
Confidence 468999999999999999999875 68899999997543 33445788999999999999999999988754 678
Q ss_pred EEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccc
Q 035998 814 LLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLAR 893 (1020)
Q Consensus 814 ~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~ 893 (1020)
++||||++ ++|.+++... .+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++
T Consensus 90 ~lv~e~~~-~~L~~~~~~~-----~~~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~ 160 (353)
T 2b9h_A 90 YIIQELMQ-TDLHRVISTQ-----MLSDDHIQYFIYQTLRAVKVLHGS---NVIHRDLKPSNLLINSNCDLKVCDFGLAR 160 (353)
T ss_dssp EEEECCCS-EEHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTCE
T ss_pred EEEEeccC-ccHHHHHhhc-----CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEcCCCcEEEEeccccc
Confidence 99999997 5898888753 589999999999999999999999 99999999999999999999999999998
Q ss_pred cccCCCCcc--------cccccccccCccCccccC-CCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHH
Q 035998 894 LILSPYDTH--------VTTDLVGTLGYIPPEYGQ-ASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIR 964 (1020)
Q Consensus 894 ~~~~~~~~~--------~~~~~~gt~~y~aPE~~~-~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~ 964 (1020)
......... ......||+.|+|||++. +..++.++||||+||++|||++|+.||...... +.......
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~---~~~~~~~~ 237 (353)
T 2b9h_A 161 IIDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYR---HQLLLIFG 237 (353)
T ss_dssp ECC----------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHH---HHHHHHHH
T ss_pred ccccccccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCcH---HHHHHHHH
Confidence 764321111 122357899999999765 478999999999999999999999999753311 11111111
Q ss_pred HHhhccccc----ccC-------------c-cccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 965 MRQENRESE----VLD-------------P-FIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 965 ~~~~~~~~~----~~d-------------~-~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
......... ... + .......+.....+.+++.+||+.||++|||++|+++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 305 (353)
T 2b9h_A 238 IIGTPHSDNDLRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALE 305 (353)
T ss_dssp HHCCCCSTTTTTTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HhCCCchhccccccccchhhHHhhcccCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence 110000000 000 0 0000001122346789999999999999999999987
No 274
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=100.00 E-value=1.2e-35 Score=335.55 Aligned_cols=255 Identities=22% Similarity=0.296 Sum_probs=194.7
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc--hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCc-----
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC--GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKND----- 812 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~----- 812 (1020)
.++|.+.+.||+|+||.||+|+.. +|+.||||++.... ....+.+.+|+.++++++||||+++++++.....
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 102 (353)
T 3coi_A 23 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 102 (353)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccce
Confidence 467899999999999999999864 68899999997543 2334678899999999999999999999987654
Q ss_pred -eEEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccc
Q 035998 813 -RLLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGL 891 (1020)
Q Consensus 813 -~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~ 891 (1020)
.++||||++ ++|.+++.. .+++..+..++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+
T Consensus 103 ~~~lv~e~~~-~~l~~~~~~------~~~~~~~~~i~~qi~~al~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~Dfg~ 172 (353)
T 3coi_A 103 DFYLVMPFMQ-TDLQKIMGL------KFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCELKILDFGL 172 (353)
T ss_dssp CCEEEEECCS-EEGGGTTTS------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTCCEEECSTTC
T ss_pred eEEEEecccc-CCHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEeECCCCcEEEeeccc
Confidence 499999997 587776642 489999999999999999999999 999999999999999999999999999
Q ss_pred cccccCCCCcccccccccccCccCccccCC-CCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhc-
Q 035998 892 ARLILSPYDTHVTTDLVGTLGYIPPEYGQA-SVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQEN- 969 (1020)
Q Consensus 892 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~- 969 (1020)
++..... .....+|+.|+|||++.+ ..++.++||||+|+++|||++|+.||...... +............
T Consensus 173 ~~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~---~~~~~i~~~~~~~~ 244 (353)
T 3coi_A 173 ARHADAE-----MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYL---DQLTQILKVTGVPG 244 (353)
T ss_dssp TTC-------------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCHH---HHHHHHHHHHCBCC
T ss_pred ccCCCCC-----ccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH---HHHHHHHHHhCCCC
Confidence 9865321 234578999999998876 68899999999999999999999999754321 1111111110000
Q ss_pred -----------------ccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 970 -----------------RESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 970 -----------------~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
.......+. .....+.....+.+++.+|++.||++|||++|+++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~ 305 (353)
T 3coi_A 245 TEFVQKLNDKAAKSYIQSLPQTPRKD-FTQLFPRASPQAADLLEKMLELDVDKRLTAAQALT 305 (353)
T ss_dssp HHHHTTCSCHHHHHHHHTSCBCSSCC-TTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHhCcCCCCcc-HHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 000000000 01111223346889999999999999999999986
No 275
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=100.00 E-value=4.6e-35 Score=323.39 Aligned_cols=252 Identities=25% Similarity=0.430 Sum_probs=192.2
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCccceEeeEEec----------
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNLVHLQGYCMH---------- 809 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~---------- 809 (1020)
.++|++.+.||+|+||.||+|+.. +++.||||++... ....+.+.+|++++++++||||+++++++.+
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~ 83 (303)
T 1zy4_A 5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT-EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTA 83 (303)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC----
T ss_pred cccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc-HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhcc
Confidence 357899999999999999999864 7899999999654 3345678899999999999999999998865
Q ss_pred ---cCceEEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEE
Q 035998 810 ---KNDRLLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHL 886 (1020)
Q Consensus 810 ---~~~~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl 886 (1020)
....++||||+++++|.+++... ...+++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||
T Consensus 84 ~~~~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dlkp~Nil~~~~~~~kl 157 (303)
T 1zy4_A 84 VKKKSTLFIQMEYCENGTLYDLIHSE---NLNQQRDEYWRLFRQILEALSYIHSQ---GIIHRDLKPMNIFIDESRNVKI 157 (303)
T ss_dssp --CEEEEEEEEECCCSCBHHHHHHHS---CGGGCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEE
T ss_pred cccCCceEEEEecCCCCCHHHhhhcc---ccccchHHHHHHHHHHHHHHHHHHhC---CeecccCCHHhEEEcCCCCEEE
Confidence 34678999999999999999753 24578899999999999999999999 9999999999999999999999
Q ss_pred eeccccccccCCCC------------cccccccccccCccCccccCCC-CCCchhhHHHHHHHHHHHHcCCCCCCCCCCC
Q 035998 887 ADFGLARLILSPYD------------THVTTDLVGTLGYIPPEYGQAS-VATYKGDVYSFGVVLLELLTGKRPMDMCKPK 953 (1020)
Q Consensus 887 ~Dfg~~~~~~~~~~------------~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlGvil~elltg~~pf~~~~~~ 953 (1020)
+|||+++....... ........|++.|+|||++.+. .++.++||||+|+++|||++ ||..
T Consensus 158 ~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~~~---- 230 (303)
T 1zy4_A 158 GDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFST---- 230 (303)
T ss_dssp CCCCCCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CCSS----
T ss_pred eeCcchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---ccCC----
Confidence 99999987543211 1122345789999999998764 78999999999999999998 5431
Q ss_pred CcccHHHHHHHHHhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 954 GSRDLISWVIRMRQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 954 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
..+............ ....+ .........+.+++.+||+.||.+|||++++++
T Consensus 231 -~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 283 (303)
T 1zy4_A 231 -GMERVNILKKLRSVS---IEFPP----DFDDNKMKVEKKIIRLLIDHDPNKRPGARTLLN 283 (303)
T ss_dssp -HHHHHHHHHHHHSTT---CCCCT----TCCTTTSHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred -chhHHHHHHhccccc---cccCc----cccccchHHHHHHHHHHHhcCcccCcCHHHHhC
Confidence 111111222221111 00111 112223345789999999999999999999987
No 276
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=100.00 E-value=4.7e-35 Score=331.24 Aligned_cols=259 Identities=22% Similarity=0.300 Sum_probs=200.0
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CC-CEEEEEEecCCchhhHHHHHHHHHHHHHcCCCc------cceEeeEEeccCc
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DG-RNVAIKRLSGDCGQMEREFRAEVEALSRAQHPN------LVHLQGYCMHKND 812 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~-~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n------iv~l~~~~~~~~~ 812 (1020)
.++|++.+.||+|+||.||+|... ++ +.||||++... ....+.+.+|++++++++|++ ++.+++++...+.
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 96 (355)
T 2eu9_A 18 QERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNV-GKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGH 96 (355)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTE
T ss_pred cccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEccc-ccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCe
Confidence 368999999999999999999864 34 68999999754 334567888999999997665 8999999999999
Q ss_pred eEEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEE--------------
Q 035998 813 RLLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILL-------------- 878 (1020)
Q Consensus 813 ~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll-------------- 878 (1020)
.++||||+ ++++.+++... ....+++.+++.++.||+.||+|||++ +|+||||||+||++
T Consensus 97 ~~lv~e~~-~~~l~~~l~~~--~~~~~~~~~~~~i~~qi~~~L~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~~~~~~ 170 (355)
T 2eu9_A 97 MCIAFELL-GKNTFEFLKEN--NFQPYPLPHVRHMAYQLCHALRFLHEN---QLTHTDLKPENILFVNSEFETLYNEHKS 170 (355)
T ss_dssp EEEEEECC-CCBHHHHHHHT--TTCCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEESCCCEEEEECCC-C
T ss_pred EEEEEecc-CCChHHHHHhc--cCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEeccccccccccccc
Confidence 99999999 56676666653 224689999999999999999999999 99999999999999
Q ss_pred -----cCCCCeEEeeccccccccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCC
Q 035998 879 -----DGNFGAHLADFGLARLILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPK 953 (1020)
Q Consensus 879 -----~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~ 953 (1020)
+.++.+||+|||+++..... .....||+.|+|||++.+..++.++||||+||++|||++|+.||......
T Consensus 171 ~~~~~~~~~~~kl~Dfg~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~ 245 (355)
T 2eu9_A 171 CEEKSVKNTSIRVADFGSATFDHEH-----HTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHENR 245 (355)
T ss_dssp CCEEEESCCCEEECCCTTCEETTSC-----CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH
T ss_pred ccccccCCCcEEEeecCcccccccc-----ccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCCCHH
Confidence 56789999999999864322 23457899999999999999999999999999999999999999753321
Q ss_pred CcccHHHHHHHHHhhccc---------ccccC--------------------c-cccCccCHHHHHHHHHHHhhccCCCC
Q 035998 954 GSRDLISWVIRMRQENRE---------SEVLD--------------------P-FIYDKQHDKEMLRVLDIACLCLSESP 1003 (1020)
Q Consensus 954 ~~~~~~~~~~~~~~~~~~---------~~~~d--------------------~-~~~~~~~~~~~~~l~~li~~cl~~dP 1003 (1020)
............... ..... + .........+...+.+++.+||+.||
T Consensus 246 ---~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP 322 (355)
T 2eu9_A 246 ---EHLVMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDP 322 (355)
T ss_dssp ---HHHHHHHHHHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSST
T ss_pred ---HHHHHHHHHcCCCcHHHhhhccchhhhcccccccccccchhccccccCCcccccccccchhHHHHHHHHHHHhcCCh
Confidence 112111111110000 00000 0 00011123445578999999999999
Q ss_pred CCCCCHHHHHH
Q 035998 1004 KVRPTTQQLVS 1014 (1020)
Q Consensus 1004 ~~RPs~~evl~ 1014 (1020)
++|||++|+++
T Consensus 323 ~~Rpt~~e~l~ 333 (355)
T 2eu9_A 323 AQRITLAEALL 333 (355)
T ss_dssp TTSCCHHHHTT
T ss_pred hhCcCHHHHhc
Confidence 99999999985
No 277
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=100.00 E-value=5.6e-35 Score=333.09 Aligned_cols=263 Identities=22% Similarity=0.285 Sum_probs=199.1
Q ss_pred ccCCCcCCeeeccCCeEEEEEEe-CCCCEEEEEEecCCchhhHHHHHHHHHHHHHcC-----------CCccceEeeEEe
Q 035998 741 TNNFDQANIIGCGGFGLVYRATL-PDGRNVAIKRLSGDCGQMEREFRAEVEALSRAQ-----------HPNLVHLQGYCM 808 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-----------h~niv~l~~~~~ 808 (1020)
.++|++.+.||+|+||.||+|+. .+++.||||++.... ...+.+.+|++++++++ ||||+++++++.
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~ 96 (373)
T 1q8y_A 18 DARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDK-VYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFN 96 (373)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEE
T ss_pred CCeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCCc-cchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhh
Confidence 35799999999999999999986 468899999997653 33466888999999886 899999999998
Q ss_pred ccC----ceEEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEc-----
Q 035998 809 HKN----DRLLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLD----- 879 (1020)
Q Consensus 809 ~~~----~~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~----- 879 (1020)
... ..++||||+ +++|.+++.... ...+++..+..++.||+.||+|||+++ +|+||||||+||+++
T Consensus 97 ~~~~~~~~~~lv~e~~-~~~L~~~~~~~~--~~~~~~~~~~~i~~qi~~aL~~lH~~~--~ivH~Dikp~NIll~~~~~~ 171 (373)
T 1q8y_A 97 HKGPNGVHVVMVFEVL-GENLLALIKKYE--HRGIPLIYVKQISKQLLLGLDYMHRRC--GIIHTDIKPENVLMEIVDSP 171 (373)
T ss_dssp EEETTEEEEEEEECCC-CEEHHHHHHHTT--TSCCCHHHHHHHHHHHHHHHHHHHHTT--CEECSCCSGGGEEEEEEETT
T ss_pred ccCCCCceEEEEEecC-CCCHHHHHHHhh--ccCCcHHHHHHHHHHHHHHHHHHHhcC--CEEecCCChHHeEEeccCCC
Confidence 654 678999999 889999988642 235899999999999999999999853 899999999999994
Q ss_pred -CCCCeEEeeccccccccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcc--
Q 035998 880 -GNFGAHLADFGLARLILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSR-- 956 (1020)
Q Consensus 880 -~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~-- 956 (1020)
..+.+||+|||+++..... .....||+.|+|||++.+..++.++||||+||++|||++|+.||.........
T Consensus 172 ~~~~~~kl~Dfg~a~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~ 246 (373)
T 1q8y_A 172 ENLIQIKIADLGNACWYDEH-----YTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKD 246 (373)
T ss_dssp TTEEEEEECCCTTCEETTBC-----CCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CH
T ss_pred cCcceEEEcccccccccCCC-----CCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCcccccCCh
Confidence 4457999999999875322 23457899999999999999999999999999999999999999754432211
Q ss_pred -cHHHHHHHHHhhccc-------------------ccccCcc---------ccCccCHHHHHHHHHHHhhccCCCCCCCC
Q 035998 957 -DLISWVIRMRQENRE-------------------SEVLDPF---------IYDKQHDKEMLRVLDIACLCLSESPKVRP 1007 (1020)
Q Consensus 957 -~~~~~~~~~~~~~~~-------------------~~~~d~~---------~~~~~~~~~~~~l~~li~~cl~~dP~~RP 1007 (1020)
+.............. ....... .....+......+.+++.+||+.||++||
T Consensus 247 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp 326 (373)
T 1q8y_A 247 DDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRA 326 (373)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCB
T ss_pred HHHHHHHHHhcCCCCHHHHhccchhhhhcCCcchhcccccccccchhhhhhhcccCCcchHHHHHHHHHHHhccCccccC
Confidence 111111111000000 0000000 00123456677899999999999999999
Q ss_pred CHHHHHH
Q 035998 1008 TTQQLVS 1014 (1020)
Q Consensus 1008 s~~evl~ 1014 (1020)
|++|+++
T Consensus 327 t~~ell~ 333 (373)
T 1q8y_A 327 DAGGLVN 333 (373)
T ss_dssp CHHHHHT
T ss_pred CHHHHhh
Confidence 9999987
No 278
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=100.00 E-value=3.2e-35 Score=328.55 Aligned_cols=257 Identities=23% Similarity=0.369 Sum_probs=178.1
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc-hhhHHHHHHHHH-HHHHcCCCccceEeeEEeccCceEEEE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC-GQMEREFRAEVE-ALSRAQHPNLVHLQGYCMHKNDRLLIY 817 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~-~l~~l~h~niv~l~~~~~~~~~~~lv~ 817 (1020)
.++|++.+.||+|+||.||+|... +++.||||++.... .....++..|+. +++.++||||+++++++.+.+..++||
T Consensus 21 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv~ 100 (327)
T 3aln_A 21 AEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICM 100 (327)
T ss_dssp SCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEEE
Confidence 467899999999999999999875 68899999997653 233345556665 666779999999999999999999999
Q ss_pred EeccCCChhhhhhhcC-CCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeecccccccc
Q 035998 818 SFMENGSLDYWLHEKL-DGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLIL 896 (1020)
Q Consensus 818 e~~~~g~L~~~l~~~~-~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~ 896 (1020)
||+++ +|.+++.... .....+++..+..++.|++.||+|||+.. +|+||||||+||+++.++.+||+|||+++...
T Consensus 101 e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~--~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~ 177 (327)
T 3aln_A 101 ELMST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENL--KIIHRDIKPSNILLDRSGNIKLCDFGISGQLV 177 (327)
T ss_dssp CCCSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHH--SCCCSCCCGGGEEEETTTEEEECCCSSSCC--
T ss_pred eecCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhccC--CEeECCCCHHHEEEcCCCCEEEccCCCceecc
Confidence 99986 7777765321 12357899999999999999999999852 89999999999999999999999999998764
Q ss_pred CCCCcccccccccccCccCcccc----CCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccc
Q 035998 897 SPYDTHVTTDLVGTLGYIPPEYG----QASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRES 972 (1020)
Q Consensus 897 ~~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~ 972 (1020)
.. .......|++.|+|||++ .+..++.++||||||+++|||++|+.||....... +. ... ..
T Consensus 178 ~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~--~~------~~~---~~ 243 (327)
T 3aln_A 178 DS---IAKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVF--DQ------LTQ---VV 243 (327)
T ss_dssp -------------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC---------------CC---CC
T ss_pred cc---cccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchHH--HH------HHH---Hh
Confidence 32 122334789999999998 56678999999999999999999999997532110 00 000 00
Q ss_pred cccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 973 EVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 973 ~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
....+.+...........+.+++.+||+.||++||+++|+++
T Consensus 244 ~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 285 (327)
T 3aln_A 244 KGDPPQLSNSEEREFSPSFINFVNLCLTKDESKRPKYKELLK 285 (327)
T ss_dssp CSCCCCCCCCSSCCCCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred cCCCCCCCCcccccCCHHHHHHHHHHhhCChhhCcCHHHHHh
Confidence 000011111111112346889999999999999999999976
No 279
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=100.00 E-value=5e-35 Score=339.17 Aligned_cols=254 Identities=23% Similarity=0.285 Sum_probs=187.7
Q ss_pred cCCCcCCeeeccCCeEEEEEEeCCCCEEEEEEecCCchhhHHHHHHHHHHHHHc-CCCccceEeeEEeccCceEEEEEec
Q 035998 742 NNFDQANIIGCGGFGLVYRATLPDGRNVAIKRLSGDCGQMEREFRAEVEALSRA-QHPNLVHLQGYCMHKNDRLLIYSFM 820 (1020)
Q Consensus 742 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~~ 820 (1020)
+.|...+.||+|+||+||.+...+|+.||||++..+. .+.+.+|+++++++ +||||+++++++.+.+..++||||+
T Consensus 15 ~~~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~~---~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~ 91 (434)
T 2rio_A 15 NLVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDF---CDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELC 91 (434)
T ss_dssp SCEEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGGG---HHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCC
T ss_pred heeeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHHH---HHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecC
Confidence 3455568899999999987766789999999987542 34678899999886 8999999999999999999999999
Q ss_pred cCCChhhhhhhcCCCCCC---CCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCC-------------CCe
Q 035998 821 ENGSLDYWLHEKLDGPSS---LDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGN-------------FGA 884 (1020)
Q Consensus 821 ~~g~L~~~l~~~~~~~~~---l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~-------------~~~ 884 (1020)
+ |+|.+++......... .++..++.++.||+.||+|||++ +|+||||||+||+++.+ +.+
T Consensus 92 ~-gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~ 167 (434)
T 2rio_A 92 N-LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSL---KIIHRDLKPQNILVSTSSRFTADQQTGAENLRI 167 (434)
T ss_dssp S-EEHHHHHHTC------------CCHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEECCHHHHSCCTTCCCSCEE
T ss_pred C-CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEecCcccccccccCCCceEE
Confidence 6 5999999865322211 13335678999999999999999 99999999999999754 489
Q ss_pred EEeeccccccccCCCCc--ccccccccccCccCccccCC-------CCCCchhhHHHHHHHHHHHHc-CCCCCCCCCCCC
Q 035998 885 HLADFGLARLILSPYDT--HVTTDLVGTLGYIPPEYGQA-------SVATYKGDVYSFGVVLLELLT-GKRPMDMCKPKG 954 (1020)
Q Consensus 885 kl~Dfg~~~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~-------~~~~~~~DvwSlGvil~ellt-g~~pf~~~~~~~ 954 (1020)
||+|||+++........ .......||+.|+|||++.+ ..++.++||||+||++|||++ |+.||.......
T Consensus 168 kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~ 247 (434)
T 2rio_A 168 LISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSRE 247 (434)
T ss_dssp EECCCTTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTTHH
T ss_pred EEcccccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchhhH
Confidence 99999999876543211 12234579999999998865 678999999999999999999 999996432211
Q ss_pred cccHHHHHHHHHhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 955 SRDLISWVIRMRQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 955 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
.. ......... .............+.+++.+||+.||.+|||+.|+++
T Consensus 248 ----~~---i~~~~~~~~-----~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~ 295 (434)
T 2rio_A 248 ----SN---IIRGIFSLD-----EMKCLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLR 295 (434)
T ss_dssp ----HH---HHHTCCCCC-----CCTTCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred ----HH---HhcCCCCcc-----cccccccccchHHHHHHHHHHhhCChhhCCCHHHHHh
Confidence 11 111111111 1111123445567899999999999999999999986
No 280
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=100.00 E-value=5.2e-35 Score=324.53 Aligned_cols=242 Identities=24% Similarity=0.363 Sum_probs=190.4
Q ss_pred HhccCCCcCCeeeccCCeEEEEEEe-CCCCEEEEEEecCCchh------hHHHHHHHHHHHHHc----CCCccceEeeEE
Q 035998 739 ESTNNFDQANIIGCGGFGLVYRATL-PDGRNVAIKRLSGDCGQ------MEREFRAEVEALSRA----QHPNLVHLQGYC 807 (1020)
Q Consensus 739 ~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~------~~~~~~~E~~~l~~l----~h~niv~l~~~~ 807 (1020)
...++|++.+.||+|+||.||+|+. .+++.||||++...... ....+.+|+++++++ +||||+++++++
T Consensus 28 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~~ 107 (312)
T 2iwi_A 28 AFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWF 107 (312)
T ss_dssp -----CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEEC
T ss_pred hhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEEE
Confidence 3457899999999999999999986 46889999999755321 123456799999998 899999999999
Q ss_pred eccCceEEEEEe-ccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEc-CCCCeE
Q 035998 808 MHKNDRLLIYSF-MENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLD-GNFGAH 885 (1020)
Q Consensus 808 ~~~~~~~lv~e~-~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~-~~~~~k 885 (1020)
.+.+..++|||| +.+++|.+++... ..+++..++.++.|++.||+|||+. +|+||||||+||+++ .++.+|
T Consensus 108 ~~~~~~~~v~e~~~~~~~L~~~l~~~----~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~k 180 (312)
T 2iwi_A 108 ETQEGFMLVLERPLPAQDLFDYITEK----GPLGEGPSRCFFGQVVAAIQHCHSR---GVVHRDIKDENILIDLRRGCAK 180 (312)
T ss_dssp -----CEEEEECCSSEEEHHHHHHHH----CSCCHHHHHHHHHHHHHHHHHHHHH---TEECCCCSGGGEEEETTTTEEE
T ss_pred ecCCeEEEEEEecCCCCCHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCChhhEEEeCCCCeEE
Confidence 999999999999 7899999999874 4689999999999999999999999 999999999999999 889999
Q ss_pred EeeccccccccCCCCcccccccccccCccCccccCCCCC-CchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHH
Q 035998 886 LADFGLARLILSPYDTHVTTDLVGTLGYIPPEYGQASVA-TYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIR 964 (1020)
Q Consensus 886 l~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~ 964 (1020)
|+|||+++..... ......|+..|+|||++.+..+ +.++||||+|+++|||++|+.||.... . .
T Consensus 181 l~dfg~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~-----~------~ 245 (312)
T 2iwi_A 181 LIDFGSGALLHDE----PYTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQ-----E------I 245 (312)
T ss_dssp ECCCSSCEECCSS----CBCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH-----H------H
T ss_pred EEEcchhhhcccC----cccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCChH-----H------H
Confidence 9999999876432 2334568999999998876665 459999999999999999999996310 0 0
Q ss_pred HHhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 965 MRQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 965 ~~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
....... .......+.+++.+||+.||++||+++|+++
T Consensus 246 ~~~~~~~------------~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~ 283 (312)
T 2iwi_A 246 LEAELHF------------PAHVSPDCCALIRRCLAPKPSSRPSLEEILL 283 (312)
T ss_dssp HHTCCCC------------CTTSCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred hhhccCC------------cccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 0110000 0111235789999999999999999999987
No 281
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2e-35 Score=327.11 Aligned_cols=257 Identities=31% Similarity=0.519 Sum_probs=185.1
Q ss_pred cccccccccccccc--ccccCCCCCCCcCEEEcCC-CccCCCCCCCCCCCCCCCeEecCCCcccccCcccccCCCCCCee
Q 035998 302 TLNLLNLRNNSLDG--SLLLNCPALTNLTSLDLGT-NKFNGPLPTNLPRCRKLKNINLARNNFSGQIPETYKNFESLSYL 378 (1020)
Q Consensus 302 ~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 378 (1020)
+++.|+|++|.+++ .+|..+..+++|++|+|++ |++.+.+|..|..+++|++|+|++|++++.+|..|.++++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 44555555555554 4444555555555555553 55555555555555555555555555555555555555555555
Q ss_pred eCCCCCCcchhhHHHHHhhhcccchhhhhccccCCCCCCCccccccCceEEEecccccccccchhhhcCCCCcEEecccc
Q 035998 379 SLSNSSIYNLSSALQVLQQCRNLTTLVLTLNFRNEKLPTDPRLHFANLKVLVIASCGLRGSIPQWLRGCSKLQLVDLSWN 458 (1020)
Q Consensus 379 ~l~~N~i~~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N 458 (1020)
++++|. +.+.+|..+..+++|++|+|++|
T Consensus 131 ~Ls~N~---------------------------------------------------l~~~~p~~~~~l~~L~~L~L~~N 159 (313)
T 1ogq_A 131 DFSYNA---------------------------------------------------LSGTLPPSISSLPNLVGITFDGN 159 (313)
T ss_dssp ECCSSE---------------------------------------------------EESCCCGGGGGCTTCCEEECCSS
T ss_pred eCCCCc---------------------------------------------------cCCcCChHHhcCCCCCeEECcCC
Confidence 555554 33455666666777777777777
Q ss_pred cccccccccccCcC-cCcEEeCCCCcccccCCCCCCCCcccccccCcCCCCCCCcccceeecccccccccccccCCCCee
Q 035998 459 QLSGTIPVWFGGFQ-DLFYLDLSNNTFTGEIPKNLTGLPSLITRNISLEEPSPDFPFFMRRNVSARGLQYNQIWSFPPTI 537 (1020)
Q Consensus 459 ~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~s~~~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~l 537 (1020)
++++.+|..+..++ +|++|+|++|++++.+|..+..++ | +.|
T Consensus 160 ~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L------------------------------------~~L 202 (313)
T 1ogq_A 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L------------------------------------AFV 202 (313)
T ss_dssp CCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C------------------------------------SEE
T ss_pred cccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c------------------------------------cEE
Confidence 77767777777776 777777777777777776665543 3 356
Q ss_pred ecccCccccCCCccccCCCcceEEEecCCcceeccCccccCCCcccEEEccCCcccccCCcccccccccccccccccccc
Q 035998 538 DLSLNRLDGSIWPEFGNLKKLHVFDLKHNNLSGPIPSELTGMTSLETLDLSYNNLSGAIPISLEKLSFLSKFSVANNHLT 617 (1020)
Q Consensus 538 ~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~ 617 (1020)
+|++|++++..|..|+.+++|+.|+|++|++++.+|. +..+++|++|+|++|+|+|.+|..+.++++|+.|++++|+++
T Consensus 203 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp ECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred ECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccc
Confidence 6777777777777888888999999999999876665 888999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCcCCccccCCC-CCCCCCCCC
Q 035998 618 GRIPSGGQFQTFPNSSFDGNN-LCGEHRYSC 647 (1020)
Q Consensus 618 g~~p~~~~~~~~~~~~~~~n~-l~~~~~~~c 647 (1020)
|.+|..+.+.++....+.+|+ +||.+.++|
T Consensus 282 ~~ip~~~~l~~L~~l~l~~N~~lc~~p~~~C 312 (313)
T 1ogq_A 282 GEIPQGGNLQRFDVSAYANNKCLCGSPLPAC 312 (313)
T ss_dssp EECCCSTTGGGSCGGGTCSSSEEESTTSSCC
T ss_pred ccCCCCccccccChHHhcCCCCccCCCCCCC
Confidence 999998888889999999998 999877677
No 282
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=100.00 E-value=2.5e-35 Score=328.01 Aligned_cols=242 Identities=25% Similarity=0.376 Sum_probs=197.7
Q ss_pred HhccCCCcCCeeeccCCeEEEEEEe-CCCCEEEEEEecCCchh------hHHHHHHHHHHHHHcC--CCccceEeeEEec
Q 035998 739 ESTNNFDQANIIGCGGFGLVYRATL-PDGRNVAIKRLSGDCGQ------MEREFRAEVEALSRAQ--HPNLVHLQGYCMH 809 (1020)
Q Consensus 739 ~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~------~~~~~~~E~~~l~~l~--h~niv~l~~~~~~ 809 (1020)
...++|++.+.||+|+||.||+|+. .+++.||||++...... ..+.+.+|++++++++ ||||+++++++.+
T Consensus 40 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~ 119 (320)
T 3a99_A 40 PLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFER 119 (320)
T ss_dssp CCTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEEC
T ss_pred CccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEec
Confidence 3457899999999999999999985 46889999998754311 1234677999999996 5999999999999
Q ss_pred cCceEEEEEeccC-CChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEc-CCCCeEEe
Q 035998 810 KNDRLLIYSFMEN-GSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLD-GNFGAHLA 887 (1020)
Q Consensus 810 ~~~~~lv~e~~~~-g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~-~~~~~kl~ 887 (1020)
.+..++||||+.+ ++|.+++... ..+++..++.++.|++.||+|||+. +|+||||||+||+++ .++.+||+
T Consensus 120 ~~~~~lv~e~~~~~~~L~~~l~~~----~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~kL~ 192 (320)
T 3a99_A 120 PDSFVLILERPEPVQDLFDFITER----GALQEELARSFFWQVLEAVRHCHNC---GVLHRDIKDENILIDLNRGELKLI 192 (320)
T ss_dssp SSEEEEEEECCSSEEEHHHHHHHH----CSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEEEC
T ss_pred CCcEEEEEEcCCCCccHHHHHhcc----CCCCHHHHHHHHHHHHHHHHHHHHC---CcEeCCCCHHHEEEeCCCCCEEEe
Confidence 9999999999986 8999998864 4689999999999999999999999 999999999999999 78999999
Q ss_pred eccccccccCCCCcccccccccccCccCccccCCCCC-CchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHH
Q 035998 888 DFGLARLILSPYDTHVTTDLVGTLGYIPPEYGQASVA-TYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMR 966 (1020)
Q Consensus 888 Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~ 966 (1020)
|||+++..... ......||+.|+|||++.+..+ +.++||||||+++|||++|+.||.... . ...
T Consensus 193 Dfg~~~~~~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~-----~------~~~ 257 (320)
T 3a99_A 193 DFGSGALLKDT----VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDE-----E------IIR 257 (320)
T ss_dssp CCTTCEECCSS----CBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH-----H------HHH
T ss_pred eCccccccccc----cccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChh-----h------hhc
Confidence 99999876432 2234578999999998876665 688999999999999999999996311 0 001
Q ss_pred hhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 967 QENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 967 ~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
.... .... ....+.+++.+||+.||++||+++|+++
T Consensus 258 ~~~~--------~~~~----~~~~~~~li~~~l~~dp~~Rps~~~ll~ 293 (320)
T 3a99_A 258 GQVF--------FRQR----VSSECQHLIRWCLALRPSDRPTFEEIQN 293 (320)
T ss_dssp CCCC--------CSSC----CCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred cccc--------cccc----CCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 1000 0011 1235789999999999999999999987
No 283
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=100.00 E-value=2.8e-34 Score=319.62 Aligned_cols=251 Identities=22% Similarity=0.361 Sum_probs=178.9
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCch-h-hHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCG-Q-MEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIY 817 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~-~-~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 817 (1020)
.++|++.+.||+|+||.||+|+.. +++.||||++..... . ..+.+.++..+++.++||||+++++++.+.+..++||
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~ 103 (318)
T 2dyl_A 24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAM 103 (318)
T ss_dssp GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred hccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEEE
Confidence 356889999999999999999875 789999999976532 2 2233445556678889999999999999999999999
Q ss_pred EeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHh-cCCCCeEecCCCCCCEEEcCCCCeEEeecccccccc
Q 035998 818 SFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQ-SCEPHILHRDIKSSNILLDGNFGAHLADFGLARLIL 896 (1020)
Q Consensus 818 e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~-~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~ 896 (1020)
||+ ++.+..+.... ...+++..++.++.|++.||+|||+ . +|+||||||+||+++.++.+||+|||+++...
T Consensus 104 e~~-~~~~~~l~~~~---~~~~~~~~~~~~~~~i~~~l~~lH~~~---~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~ 176 (318)
T 2dyl_A 104 ELM-GTCAEKLKKRM---QGPIPERILGKMTVAIVKALYYLKEKH---GVIHRDVKPSNILLDERGQIKLCDFGISGRLV 176 (318)
T ss_dssp CCC-SEEHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHHHHHH---CCCCCCCCGGGEEECTTSCEEECCCTTC----
T ss_pred ecc-CCcHHHHHHHh---ccCCCHHHHHHHHHHHHHHHHHHHhhC---CEEeCCCCHHHEEECCCCCEEEEECCCchhcc
Confidence 999 45555554432 2468999999999999999999998 6 89999999999999999999999999997653
Q ss_pred CCCCcccccccccccCccCccccC-----CCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhccc
Q 035998 897 SPYDTHVTTDLVGTLGYIPPEYGQ-----ASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRE 971 (1020)
Q Consensus 897 ~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~ 971 (1020)
.. .......|++.|+|||++. ...++.++||||+|+++|||++|+.||..... . ............
T Consensus 177 ~~---~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~--~---~~~~~~~~~~~~- 247 (318)
T 2dyl_A 177 DD---KAKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKT--D---FEVLTKVLQEEP- 247 (318)
T ss_dssp -------------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCCS--H---HHHHHHHHHSCC-
T ss_pred CC---ccccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCCc--c---HHHHHHHhccCC-
Confidence 32 2223456899999999884 56788999999999999999999999974321 1 111111111111
Q ss_pred ccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 972 SEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 972 ~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
..... .......+.+++.+||+.||.+||+++|+++
T Consensus 248 ~~~~~-------~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 283 (318)
T 2dyl_A 248 PLLPG-------HMGFSGDFQSFVKDCLTKDHRKRPKYNKLLE 283 (318)
T ss_dssp CCCCS-------SSCCCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred CCCCc-------cCCCCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence 11000 0011235889999999999999999999986
No 284
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.1e-34 Score=332.73 Aligned_cols=250 Identities=23% Similarity=0.356 Sum_probs=186.4
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeCCCCEEEEEEecCCchhhHHHHHHHHHHHHHc-CCCccceEeeEEeccCceEEEEEe
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLPDGRNVAIKRLSGDCGQMEREFRAEVEALSRA-QHPNLVHLQGYCMHKNDRLLIYSF 819 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~ 819 (1020)
..+|++.++||+|+||+||.....+++.||||++..... ..+.+|+++++++ +|||||++++++.+....++||||
T Consensus 23 ~~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~---~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E~ 99 (432)
T 3p23_A 23 KISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECF---SFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIEL 99 (432)
T ss_dssp TEEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTE---EECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred cEEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHH---HHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEEC
Confidence 346888899999999997665556899999999975432 2356799999999 799999999999999999999999
Q ss_pred ccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcC-----CCCeEEeecccccc
Q 035998 820 MENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDG-----NFGAHLADFGLARL 894 (1020)
Q Consensus 820 ~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~-----~~~~kl~Dfg~~~~ 894 (1020)
++ |+|.+++.... ...+...++.++.||+.||+|||++ +|+||||||+||+++. ...+||+|||+++.
T Consensus 100 ~~-g~L~~~l~~~~---~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~ 172 (432)
T 3p23_A 100 CA-ATLQEYVEQKD---FAHLGLEPITLLQQTTSGLAHLHSL---NIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKK 172 (432)
T ss_dssp CS-EEHHHHHHSSS---CCCCSSCHHHHHHHHHHHHHHHHHT---TCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEEC
T ss_pred CC-CCHHHHHHhcC---CCccchhHHHHHHHHHHHHHHHHHC---cCEeCCCCHHHEEEecCCCCCceeEEEecccceee
Confidence 96 59999987642 2334445678999999999999999 9999999999999943 33588999999987
Q ss_pred ccCCCCc-ccccccccccCccCccccC---CCCCCchhhHHHHHHHHHHHHc-CCCCCCCCCCCCcccHHHHHHHHHhhc
Q 035998 895 ILSPYDT-HVTTDLVGTLGYIPPEYGQ---ASVATYKGDVYSFGVVLLELLT-GKRPMDMCKPKGSRDLISWVIRMRQEN 969 (1020)
Q Consensus 895 ~~~~~~~-~~~~~~~gt~~y~aPE~~~---~~~~~~~~DvwSlGvil~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~ 969 (1020)
....... .......||+.|+|||++. ...++.++||||+||++|||++ |..||..... ... ..... .
T Consensus 173 ~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~----~~~---~~~~~-~ 244 (432)
T 3p23_A 173 LAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQ----RQA---NILLG-A 244 (432)
T ss_dssp C------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTT----HHH---HHHTT-C
T ss_pred ccCCCcceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhH----HHH---HHHhc-c
Confidence 6432211 2234467999999999987 4677889999999999999999 9999953221 111 11111 1
Q ss_pred ccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 970 RESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 970 ~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
....... ........+.+++.+||+.||.+|||++|+++
T Consensus 245 ~~~~~~~------~~~~~~~~~~~li~~~L~~dP~~Rps~~evl~ 283 (432)
T 3p23_A 245 CSLDCLH------PEKHEDVIARELIEKMIAMDPQKRPSAKHVLK 283 (432)
T ss_dssp CCCTTSC------TTCHHHHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred CCccccC------ccccccHHHHHHHHHHHhCCHhhCCCHHHHHh
Confidence 1111111 11233445789999999999999999999985
No 285
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=100.00 E-value=4.5e-35 Score=347.57 Aligned_cols=260 Identities=25% Similarity=0.338 Sum_probs=197.8
Q ss_pred cCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCc-hhhHHHHHHHHHHHHHcCCCccceEeeEEec------cCce
Q 035998 742 NNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDC-GQMEREFRAEVEALSRAQHPNLVHLQGYCMH------KNDR 813 (1020)
Q Consensus 742 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~------~~~~ 813 (1020)
++|++.+.||+|+||.||+|... +|+.||||++.... ....+.+.+|++++++++||||+++++++.. .+..
T Consensus 14 grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~~ 93 (676)
T 3qa8_A 14 GPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDLP 93 (676)
T ss_dssp ---CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSSC
T ss_pred CCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCeE
Confidence 67999999999999999999864 68999999987653 3445678999999999999999999998765 6677
Q ss_pred EEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCC---eEEeecc
Q 035998 814 LLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFG---AHLADFG 890 (1020)
Q Consensus 814 ~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~---~kl~Dfg 890 (1020)
++||||+++|+|.+++.... ....+++..++.++.|++.||+|||+. +|+||||||+||+++.++. +||+|||
T Consensus 94 ~LVmEy~~ggsL~~~L~~~~-~~~~lse~~i~~I~~QLl~aL~yLHs~---gIVHrDLKP~NILl~~~g~~~~vKL~DFG 169 (676)
T 3qa8_A 94 LLAMEYCEGGDLRKYLNQFE-NCCGLKEGPIRTLLSDISSALRYLHEN---RIIHRDLKPENIVLQPGPQRLIHKIIDLG 169 (676)
T ss_dssp CCEEECCSSCBHHHHHHSSS-CTTCCCSSHHHHHHHHHHHHHHHHHHT---TBCCCCCCSTTEEEECCSSSCEEEECSCC
T ss_pred EEEEEeCCCCCHHHHHHhcc-cCCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEeecCCCceeEEEcccc
Confidence 99999999999999998643 233588899999999999999999999 9999999999999997765 8999999
Q ss_pred ccccccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhc-
Q 035998 891 LARLILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQEN- 969 (1020)
Q Consensus 891 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~- 969 (1020)
.++..... .......||+.|+|||++.+..++.++||||+|+++|||++|..||..... ...|........
T Consensus 170 ~a~~~~~~---~~~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~~-----~~~~~~~i~~~~~ 241 (676)
T 3qa8_A 170 YAKELDQG---ELCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQ-----PVQWHGKVREKSN 241 (676)
T ss_dssp CCCBTTSC---CCCCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSCH-----HHHSSTTCC----
T ss_pred cccccccc---cccccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCcccc-----hhhhhhhhhcccc
Confidence 99876432 223446789999999999999999999999999999999999999964311 011100000000
Q ss_pred ---cccccc------Cc--cccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHH
Q 035998 970 ---RESEVL------DP--FIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLV 1013 (1020)
Q Consensus 970 ---~~~~~~------d~--~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl 1013 (1020)
...... .. .............+.+++.+||++||++|||++|++
T Consensus 242 ~~~~~~~~l~g~~~~~~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~elL 296 (676)
T 3qa8_A 242 EHIVVYDDLTGAVKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQNP 296 (676)
T ss_dssp --CCSCCCCSSSCCCCSSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCTTCC
T ss_pred hhhhhhhhhccccccccccCCchhhchhhhHHHHHHHHHHccCCHhhCcCHHHHh
Confidence 000000 00 001112334556789999999999999999998843
No 286
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=7e-35 Score=324.69 Aligned_cols=289 Identities=19% Similarity=0.253 Sum_probs=212.1
Q ss_pred ccCCCCHHHHHHHHHHHHHhccCCCCCCCCC-----CCCCCCcCceEEcCCCCCCCCCCCCCCCceEEEecCCCcccccc
Q 035998 27 QDLTCNPNDLAALEDFMKNFESGIDGWGTNA-----SSSDCCHWVGITCNSSSSLGLNDSIGSGRVTGLFLYKRRLKGKL 101 (1020)
Q Consensus 27 ~~~~~~~~~~~aL~~~k~~~~~~~~~~~~~~-----~~~~~C~w~gv~C~~~~~~~~~~~~~~~~v~~l~l~~~~l~~~~ 101 (1020)
+...+.++|++||++||+++..+..+|...| .+.++|.|.||.|+.... .+ ......+|+.|+|+++.++ .+
T Consensus 20 ~~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~-~l-~~~~~~~l~~L~L~~n~l~-~l 96 (328)
T 4fcg_A 20 QGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATAD-LL-EDATQPGRVALELRSVPLP-QF 96 (328)
T ss_dssp C--CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHH-HH-HHHTSTTCCEEEEESSCCS-SC
T ss_pred eccccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHH-HH-hcccccceeEEEccCCCch-hc
Confidence 3455778999999999999987776775545 267899999999953100 00 0011368899999999998 78
Q ss_pred cccccCCCCCcEEecCCCCCCCCCCccccCCCCCCeeeccCCCCCCCCCCcc-CCCCcceeeeccCccCCCCCccccccC
Q 035998 102 SESLGNLVQLRFLNLSHNLLKGTVPVSLVNLPNLEVLDLSSNDLSGPLPQTI-NLPSIQVLDISSNSLNGSVPTSICKNS 180 (1020)
Q Consensus 102 ~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-~l~~L~~L~Ls~N~l~~~ip~~~~~~~ 180 (1020)
|..++++++|++|+|++|.++ .+|..++++++|++|+|++|.++ .+|..+ ++++|++|+|++|++.+.+|..+...
T Consensus 97 p~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~- 173 (328)
T 4fcg_A 97 PDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST- 173 (328)
T ss_dssp CSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE-
T ss_pred ChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhc-
Confidence 888999999999999999999 89999999999999999999998 556556 88999999999988888888766420
Q ss_pred CcccEEEccCCCCCCCCCCccccccccccccccccccccccchhhhhhcccccccccccccCCCCCcccccCCCccEEEc
Q 035998 181 SRIRVINLSVNYFSGTLSPGLGNCASLEHLCLGMNDLTGGIADDIFQLQKLRLLGLQDNQLSGKLSPSIADLSNLVRLDV 260 (1020)
Q Consensus 181 ~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 260 (1020)
..+..|+++++|++|+|++|+++ .+|..+..+++|++|+|++|++++ +|..+..+++|++|+|
T Consensus 174 ---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~L 236 (328)
T 4fcg_A 174 ---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDL 236 (328)
T ss_dssp ---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEEC
T ss_pred ---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEEC
Confidence 12233455666777777777766 566666677777777777777763 4556667777777777
Q ss_pred cCCcCcccCcccccCCcccceeecccccccccCCCCCcCCcccccccccccccccccccCCCCCCCcCEEEcCCCccC
Q 035998 261 SSNNFSGNIPDVFAGLGEFQYLVAHSNRFTGRIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNKFN 338 (1020)
Q Consensus 261 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 338 (1020)
++|++.+.+|..|+++++|++|++++|.+.+.+|..+.++++|+.|+|++|.+.+.+|..+..+++|+.+++..|.+.
T Consensus 237 s~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred cCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 777777777777777777777777777777777777777777777777777777777777777777777777766554
No 287
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.4e-33 Score=318.00 Aligned_cols=307 Identities=23% Similarity=0.355 Sum_probs=174.9
Q ss_pred ccCCCCCcEEecCCCCCCCCCCccccCCCCCCeeeccCCCCCCCCCCccCCCCcceeeeccCccCCCCCccccccCCccc
Q 035998 105 LGNLVQLRFLNLSHNLLKGTVPVSLVNLPNLEVLDLSSNDLSGPLPQTINLPSIQVLDISSNSLNGSVPTSICKNSSRIR 184 (1020)
Q Consensus 105 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~ 184 (1020)
+..+++|++|++++|.++ .+| .+..+++|++|++++|++++..+ ...+++|++|+|++|.++ .+| .+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~-~~~--~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKIT-DIS--ALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-CCG--GGTTCTTCS
T ss_pred chhcccccEEEEeCCccc-cch-hhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCccc-Cch--HHcCCCcCC
Confidence 345667777777777776 344 36667777777777777765544 226667777777777665 233 134555566
Q ss_pred EEEccCCCCCCCCCCccccccccccccccccccccccchhhhhhcccccccccccccCCCCCcccccCCCccEEEccCCc
Q 035998 185 VINLSVNYFSGTLSPGLGNCASLEHLCLGMNDLTGGIADDIFQLQKLRLLGLQDNQLSGKLSPSIADLSNLVRLDVSSNN 264 (1020)
Q Consensus 185 ~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 264 (1020)
+|++++|.+++..+ +..+++|++|++++|.....++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.
T Consensus 114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred EEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence 66666665553322 5555666666666664432222 25555555555555555553322 5555555666665555
Q ss_pred CcccCcccccCCcccceeecccccccccCCCCCcCCcccccccccccccccccccCCCCCCCcCEEEcCCCccCCCCCCC
Q 035998 265 FSGNIPDVFAGLGEFQYLVAHSNRFTGRIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNKFNGPLPTN 344 (1020)
Q Consensus 265 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~ 344 (1020)
+++..+ +..+++|+.|++++|++++..+ +.. +++|++|++++|++++..+
T Consensus 189 l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~------------------------~~~L~~L~l~~n~l~~~~~-- 238 (347)
T 4fmz_A 189 IEDISP--LASLTSLHYFTAYVNQITDITP--VAN------------------------MTRLNSLKIGNNKITDLSP-- 238 (347)
T ss_dssp CCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGG------------------------CTTCCEEECCSSCCCCCGG--
T ss_pred cccccc--ccCCCccceeecccCCCCCCch--hhc------------------------CCcCCEEEccCCccCCCcc--
Confidence 553322 4445555555555555443322 344 4444444444444443222
Q ss_pred CCCCCCCCeEecCCCcccccCcccccCCCCCCeeeCCCCCCcchhhHHHHHhhhcccchhhhhccccCCCCCCCcccccc
Q 035998 345 LPRCRKLKNINLARNNFSGQIPETYKNFESLSYLSLSNSSIYNLSSALQVLQQCRNLTTLVLTLNFRNEKLPTDPRLHFA 424 (1020)
Q Consensus 345 l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~i~~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 424 (1020)
+..+++|++|++++|++++. ..+..+++|++|++++|+++.++. ...++
T Consensus 239 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~~-----------------------------~~~l~ 287 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDISV-----------------------------LNNLS 287 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG-----------------------------GGGCT
T ss_pred hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCChh-----------------------------hcCCC
Confidence 44445555555555555432 234555555555555555444321 11233
Q ss_pred CceEEEecccccccccchhhhcCCCCcEEecccccccccccccccCcCcCcEEeCCCCccc
Q 035998 425 NLKVLVIASCGLRGSIPQWLRGCSKLQLVDLSWNQLSGTIPVWFGGFQDLFYLDLSNNTFT 485 (1020)
Q Consensus 425 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 485 (1020)
+|+.|++++|.+.+..|..+.++++|+.|++++|++++..| +..+++|++|++++|.|+
T Consensus 288 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 288 QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp TCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 44555555555666677788889999999999999997666 888999999999999886
No 288
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=2.1e-33 Score=314.26 Aligned_cols=302 Identities=21% Similarity=0.210 Sum_probs=177.4
Q ss_pred CCCCCCCCCCCCCCcCceEEcCCCCCCCCCCCCCCCceEEEecCCCcccccccccccCCCCCcEEecCCCCCCCCCCccc
Q 035998 50 IDGWGTNASSSDCCHWVGITCNSSSSLGLNDSIGSGRVTGLFLYKRRLKGKLSESLGNLVQLRFLNLSHNLLKGTVPVSL 129 (1020)
Q Consensus 50 ~~~~~~~~~~~~~C~w~gv~C~~~~~~~~~~~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l 129 (1020)
+..|...++..+.|+|+.+.|+......+|.... .+++.|++++|.+++..+.+++++++|++|+|++|.+++..|..|
T Consensus 20 p~~~~~~cp~~c~c~l~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 98 (332)
T 2ft3_A 20 PPTYSAMCPFGCHCHLRVVQCSDLGLKAVPKEIS-PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAF 98 (332)
T ss_dssp -----CCCCSSCEEETTEEECCSSCCSSCCSCCC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGS
T ss_pred CCcccCCCCCCCcccCCEEECCCCCccccCCCCC-CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHh
Confidence 3445555555566899999998877666666553 466667777777766666667777777777777777766566667
Q ss_pred cCCCCCCeeeccCCCCCCCCCCccCCCCcceeeeccCccCCCCCccccccCCcccEEEccCCCCC--CCCCCcccccccc
Q 035998 130 VNLPNLEVLDLSSNDLSGPLPQTINLPSIQVLDISSNSLNGSVPTSICKNSSRIRVINLSVNYFS--GTLSPGLGNCASL 207 (1020)
Q Consensus 130 ~~l~~L~~L~L~~n~l~~~~p~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~--~~~~~~l~~l~~L 207 (1020)
+++++|++|+|++|+++..++... ++|++|++++|+++ .+|...+..+++|+.|++++|.++ +..+..+..+ +|
T Consensus 99 ~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L 174 (332)
T 2ft3_A 99 SPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KL 174 (332)
T ss_dssp TTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CC
T ss_pred hCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-cc
Confidence 777777777777776664333332 56666666666665 445544455566666666666654 2444455554 55
Q ss_pred ccccccccccccccchhhhhhcccccccccccccCCCCCcccccCCCccEEEccCCcCcccCcccccCCcccceeecccc
Q 035998 208 EHLCLGMNDLTGGIADDIFQLQKLRLLGLQDNQLSGKLSPSIADLSNLVRLDVSSNNFSGNIPDVFAGLGEFQYLVAHSN 287 (1020)
Q Consensus 208 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 287 (1020)
++|++++|++++ +|..+. + +|++|++++|.+++..+..|..+++|+.|++++|
T Consensus 175 ~~L~l~~n~l~~-l~~~~~--~------------------------~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N 227 (332)
T 2ft3_A 175 NYLRISEAKLTG-IPKDLP--E------------------------TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN 227 (332)
T ss_dssp SCCBCCSSBCSS-CCSSSC--S------------------------SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSS
T ss_pred CEEECcCCCCCc-cCcccc--C------------------------CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC
Confidence 555555555553 333222 3 4445555555555444444555555555555555
Q ss_pred cccccCCCCCcCCcccccccccccccccccccCCCCCCCcCEEEcCCCccCCCCCCCCCC------CCCCCeEecCCCcc
Q 035998 288 RFTGRIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNKFNGPLPTNLPR------CRKLKNINLARNNF 361 (1020)
Q Consensus 288 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~------l~~L~~L~L~~N~l 361 (1020)
++++..+..+..+++|+.|++++|+++ .+|..+..+++|++|++++|+|++..+..|.. ..+|+.|++++|++
T Consensus 228 ~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 228 QIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp CCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred cCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcc
Confidence 555544445555555555555555555 34444555666666666666666555555443 35677788888877
Q ss_pred c--ccCcccccCCCCCCeeeCCCCC
Q 035998 362 S--GQIPETYKNFESLSYLSLSNSS 384 (1020)
Q Consensus 362 ~--~~~p~~~~~l~~L~~L~l~~N~ 384 (1020)
. +..|..|..+++|+.+++++|+
T Consensus 307 ~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 307 PYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccCcccccccchhhhhhccccc
Confidence 6 5667777788888888887774
No 289
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.8e-33 Score=315.54 Aligned_cols=307 Identities=22% Similarity=0.336 Sum_probs=212.0
Q ss_pred hhhhcccccccccccccCCCCCcccccCCCccEEEccCCcCcccCcccccCCcccceeecccccccccCCCCCcCCcccc
Q 035998 225 IFQLQKLRLLGLQDNQLSGKLSPSIADLSNLVRLDVSSNNFSGNIPDVFAGLGEFQYLVAHSNRFTGRIPHSLSNSPTLN 304 (1020)
Q Consensus 225 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 304 (1020)
+..+++|++|++++|.++. ++ .+..+++|++|++++|++++..+ +..+++|++|++++|++++. +.+.++++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCS
T ss_pred chhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCC
Confidence 4556666777777766663 33 36666777777777777764433 66677777777777766643 2466677777
Q ss_pred cccccccccccccccCCCCCCCcCEEEcCCCccCCCCCCCCCCCCCCCeEecCCCcccccCcccccCCCCCCeeeCCCCC
Q 035998 305 LLNLRNNSLDGSLLLNCPALTNLTSLDLGTNKFNGPLPTNLPRCRKLKNINLARNNFSGQIPETYKNFESLSYLSLSNSS 384 (1020)
Q Consensus 305 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~ 384 (1020)
+|++++|.+++..+ +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.
T Consensus 114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred EEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence 77777777765443 6667777777777775543333 36677777777777777765433 6677777777777777
Q ss_pred CcchhhHHHHHhhhcccchhhhhccccCCCCCCCccccccCceEEEecccccccccchhhhcCCCCcEEecccccccccc
Q 035998 385 IYNLSSALQVLQQCRNLTTLVLTLNFRNEKLPTDPRLHFANLKVLVIASCGLRGSIPQWLRGCSKLQLVDLSWNQLSGTI 464 (1020)
Q Consensus 385 i~~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 464 (1020)
+..++. +. .+++|+.+++.+|.+.+..+ +..+++|+.|++++|++++..
T Consensus 189 l~~~~~----~~-------------------------~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~ 237 (347)
T 4fmz_A 189 IEDISP----LA-------------------------SLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS 237 (347)
T ss_dssp CCCCGG----GG-------------------------GCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG
T ss_pred cccccc----cc-------------------------CCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCc
Confidence 665543 22 33445555555665655444 677778888888888887544
Q ss_pred cccccCcCcCcEEeCCCCcccccCCCCCCCCcccccccCcCCCCCCCcccceeecccccccccccccCCCCeeecccCcc
Q 035998 465 PVWFGGFQDLFYLDLSNNTFTGEIPKNLTGLPSLITRNISLEEPSPDFPFFMRRNVSARGLQYNQIWSFPPTIDLSLNRL 544 (1020)
Q Consensus 465 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~s~~~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~l~Ls~N~l 544 (1020)
+ +..+++|++|+|++|.+++. +.+..+++| +.|++++|++
T Consensus 238 ~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L------------------------------------~~L~l~~n~l 277 (347)
T 4fmz_A 238 P--LANLSQLTWLEIGTNQISDI--NAVKDLTKL------------------------------------KMLNVGSNQI 277 (347)
T ss_dssp G--GTTCTTCCEEECCSSCCCCC--GGGTTCTTC------------------------------------CEEECCSSCC
T ss_pred c--hhcCCCCCEEECCCCccCCC--hhHhcCCCc------------------------------------CEEEccCCcc
Confidence 4 77788888888888887742 235555544 3566777777
Q ss_pred ccCCCccccCCCcceEEEecCCcceeccCccccCCCcccEEEccCCcccccCCcccccccccccccccccccc
Q 035998 545 DGSIWPEFGNLKKLHVFDLKHNNLSGPIPSELTGMTSLETLDLSYNNLSGAIPISLEKLSFLSKFSVANNHLT 617 (1020)
Q Consensus 545 ~~~~~~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~ 617 (1020)
++. +.+..+++|+.|+|++|++++..|..++.+++|++|+|++|++++..| +..+++|+.|++++|+++
T Consensus 278 ~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 278 SDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 664 468888999999999999998888889999999999999999997665 888999999999999886
No 290
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=5.7e-33 Score=310.58 Aligned_cols=302 Identities=19% Similarity=0.225 Sum_probs=208.0
Q ss_pred CCCCCCCCCCCCCCcCceEEcCCCCCCCCCCCCCCCceEEEecCCCcccccccccccCCCCCcEEecCCCCCCCCCCccc
Q 035998 50 IDGWGTNASSSDCCHWVGITCNSSSSLGLNDSIGSGRVTGLFLYKRRLKGKLSESLGNLVQLRFLNLSHNLLKGTVPVSL 129 (1020)
Q Consensus 50 ~~~~~~~~~~~~~C~w~gv~C~~~~~~~~~~~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l 129 (1020)
...|...++..+.|+|+.+.|+....+.+|...+ ++|++|+|++|++++..+..|
T Consensus 18 i~~~~~~cp~~c~c~l~~l~~~~~~l~~lp~~~~-------------------------~~l~~L~L~~n~i~~~~~~~~ 72 (330)
T 1xku_A 18 IEPMGPVCPFRCQCHLRVVQCSDLGLEKVPKDLP-------------------------PDTALLDLQNNKITEIKDGDF 72 (330)
T ss_dssp ----CCCCCTTCEEETTEEECTTSCCCSCCCSCC-------------------------TTCCEEECCSSCCCCBCTTTT
T ss_pred cccccCCCCCCCcCCCeEEEecCCCccccCccCC-------------------------CCCeEEECCCCcCCEeChhhh
Confidence 3456666676777999999998765444443322 355666666666665444456
Q ss_pred cCCCCCCeeeccCCCCCCCCCCcc-CCCCcceeeeccCccCCCCCccccccCCcccEEEccCCCCCCCCCCccccccccc
Q 035998 130 VNLPNLEVLDLSSNDLSGPLPQTI-NLPSIQVLDISSNSLNGSVPTSICKNSSRIRVINLSVNYFSGTLSPGLGNCASLE 208 (1020)
Q Consensus 130 ~~l~~L~~L~L~~n~l~~~~p~~~-~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~ 208 (1020)
+++++|++|+|++|++++..|..+ ++++|++|+|++|+++ .+|..++ ++|+.|++++|.+++..+..|.++++|+
T Consensus 73 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 148 (330)
T 1xku_A 73 KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMI 148 (330)
T ss_dssp TTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCC
T ss_pred ccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc---ccccEEECCCCcccccCHhHhcCCcccc
Confidence 666666666666666666555555 5666666666666665 5555543 4666777777777666556667777777
Q ss_pred ccccccccccc--ccchhhhhhcccccccccccccCCCCCcccccCCCccEEEccCCcCcccCcccccCCcccceeeccc
Q 035998 209 HLCLGMNDLTG--GIADDIFQLQKLRLLGLQDNQLSGKLSPSIADLSNLVRLDVSSNNFSGNIPDVFAGLGEFQYLVAHS 286 (1020)
Q Consensus 209 ~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 286 (1020)
+|++++|.++. ..+..+.++++|++|++++|+++. +|..+. ++|++|++++|++++..|..|..+++|+.|++++
T Consensus 149 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 225 (330)
T 1xku_A 149 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 225 (330)
T ss_dssp EEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCS
T ss_pred EEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCC
Confidence 77777777753 566677777778888888887773 444443 6788888888888877778888888888888888
Q ss_pred ccccccCCCCCcCCcccccccccccccccccccCCCCCCCcCEEEcCCCccCCCCCCCCCC------CCCCCeEecCCCc
Q 035998 287 NRFTGRIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNKFNGPLPTNLPR------CRKLKNINLARNN 360 (1020)
Q Consensus 287 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~------l~~L~~L~L~~N~ 360 (1020)
|++++..+..+..+++|++|+|++|+++ .+|..+..+++|++|+|++|+|++..+..|.. ...|+.|++++|+
T Consensus 226 n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 226 NSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp SCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred CcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCc
Confidence 8888777777888888888888888887 55666777888888888888888766666643 3677888888888
Q ss_pred ccc--cCcccccCCCCCCeeeCCCCC
Q 035998 361 FSG--QIPETYKNFESLSYLSLSNSS 384 (1020)
Q Consensus 361 l~~--~~p~~~~~l~~L~~L~l~~N~ 384 (1020)
+.. ..|..|..+.+++.++|++|+
T Consensus 305 ~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 305 VQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ccccccCccccccccceeEEEecccC
Confidence 753 556778888888888888774
No 291
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=100.00 E-value=8.8e-34 Score=309.46 Aligned_cols=229 Identities=14% Similarity=0.140 Sum_probs=181.7
Q ss_pred cCCCcCCeeeccCCeEEEEEEeC-CCCEEEEEEecCCch---hhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEEE
Q 035998 742 NNFDQANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCG---QMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLIY 817 (1020)
Q Consensus 742 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 817 (1020)
++|++.+.||+|+||.||+|+.. +++.||||++..... ...+.+.+|++.+++++||||+++++++.+.+..|+||
T Consensus 31 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 110 (286)
T 3uqc_A 31 GRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVA 110 (286)
T ss_dssp TTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred CcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEEE
Confidence 57999999999999999999875 589999999976532 23467899999999999999999999999999999999
Q ss_pred EeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccC
Q 035998 818 SFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILS 897 (1020)
Q Consensus 818 e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~ 897 (1020)
||+++++|.+++... ....++..++.|++.||+|||++ +|+||||||+||+++.++.+||++++
T Consensus 111 e~~~g~~L~~~l~~~------~~~~~~~~i~~ql~~aL~~lH~~---givH~Dikp~NIll~~~g~~kl~~~~------- 174 (286)
T 3uqc_A 111 EWIRGGSLQEVADTS------PSPVGAIRAMQSLAAAADAAHRA---GVALSIDHPSRVRVSIDGDVVLAYPA------- 174 (286)
T ss_dssp ECCCEEEHHHHHTTC------CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEETTSCEEECSCC-------
T ss_pred EecCCCCHHHHHhcC------CChHHHHHHHHHHHHHHHHHHHC---CCccCCCCcccEEEcCCCCEEEEecc-------
Confidence 999999999998542 35567889999999999999999 99999999999999999999997443
Q ss_pred CCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccccccCc
Q 035998 898 PYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVLDP 977 (1020)
Q Consensus 898 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 977 (1020)
|++ .++.++|||||||++|||+||+.||............. .........+
T Consensus 175 ---------------~~~-------~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~~~~-------~~~~~~~~~~ 225 (286)
T 3uqc_A 175 ---------------TMP-------DANPQDDIRGIGASLYALLVNRWPLPEAGVRSGLAPAE-------RDTAGQPIEP 225 (286)
T ss_dssp ---------------CCT-------TCCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCSEECC-------BCTTSCBCCH
T ss_pred ---------------ccC-------CCCchhHHHHHHHHHHHHHHCCCCCCcCCcchhhHHHH-------HHhccCCCCh
Confidence 333 36889999999999999999999998654322110000 0000000000
Q ss_pred cccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhc
Q 035998 978 FIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVSWLDSI 1019 (1020)
Q Consensus 978 ~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1019 (1020)
. .........+.+++.+||+.||++| |++|+++.|+++
T Consensus 226 ~---~~~~~~~~~l~~li~~~l~~dP~~R-s~~el~~~L~~~ 263 (286)
T 3uqc_A 226 A---DIDRDIPFQISAVAARSVQGDGGIR-SASTLLNLMQQA 263 (286)
T ss_dssp H---HHCTTSCHHHHHHHHHHHCTTSSCC-CHHHHHHHHHHH
T ss_pred h---hcccCCCHHHHHHHHHHcccCCccC-CHHHHHHHHHHH
Confidence 0 0011122458899999999999999 999999999874
No 292
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=100.00 E-value=7.1e-34 Score=348.56 Aligned_cols=237 Identities=23% Similarity=0.307 Sum_probs=191.5
Q ss_pred cCCCcCCeeeccCCeEEEEEEeC--CCCEEEEEEecCCc-hhhHHHHHHHHHHHHHcCCCccceEeeEEeccCc-----e
Q 035998 742 NNFDQANIIGCGGFGLVYRATLP--DGRNVAIKRLSGDC-GQMEREFRAEVEALSRAQHPNLVHLQGYCMHKND-----R 813 (1020)
Q Consensus 742 ~~~~~~~~lg~G~~g~V~~~~~~--~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~-----~ 813 (1020)
++|++.+.||+|+||.||+|.+. +++.||||++.... ......+.+|++++++++||||+++++++...+. .
T Consensus 80 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~ 159 (681)
T 2pzi_A 80 GQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPVG 159 (681)
T ss_dssp TTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEEE
T ss_pred CceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCcee
Confidence 68999999999999999999875 58899999986543 3445678899999999999999999999987766 6
Q ss_pred EEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccc
Q 035998 814 LLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLAR 893 (1020)
Q Consensus 814 ~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~ 893 (1020)
|+||||+++++|.+++.. .+++.+++.++.||+.||+|||++ +||||||||+||+++.+ .+||+|||+++
T Consensus 160 ~lv~E~~~g~~L~~~~~~------~l~~~~~~~~~~qi~~aL~~lH~~---giiHrDlkp~NIll~~~-~~kl~DFG~a~ 229 (681)
T 2pzi_A 160 YIVMEYVGGQSLKRSKGQ------KLPVAEAIAYLLEILPALSYLHSI---GLVYNDLKPENIMLTEE-QLKLIDLGAVS 229 (681)
T ss_dssp EEEEECCCCEECC----C------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECSS-CEEECCCTTCE
T ss_pred EEEEEeCCCCcHHHHHhC------CCCHHHHHHHHHHHHHHHHHHHHC---CCeecccChHHeEEeCC-cEEEEecccch
Confidence 999999999999877643 589999999999999999999999 99999999999999986 89999999998
Q ss_pred cccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhccccc
Q 035998 894 LILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESE 973 (1020)
Q Consensus 894 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 973 (1020)
..... ....||+.|+|||++.+.. +.++|||||||++|+|++|..||.........
T Consensus 230 ~~~~~------~~~~gt~~y~aPE~~~~~~-~~~sDi~slG~~l~~l~~g~~~~~~~~~~~~~----------------- 285 (681)
T 2pzi_A 230 RINSF------GYLYGTPGFQAPEIVRTGP-TVATDIYTVGRTLAALTLDLPTRNGRYVDGLP----------------- 285 (681)
T ss_dssp ETTCC------SCCCCCTTTSCTTHHHHCS-CHHHHHHHHHHHHHHHHSCCCEETTEECSSCC-----------------
T ss_pred hcccC------CccCCCccccCHHHHcCCC-CCceehhhhHHHHHHHHhCCCCCccccccccc-----------------
Confidence 76332 3457999999999887654 89999999999999999999988642211110
Q ss_pred ccCccccCccCHHHHHHHHHHHhhccCCCCCCCCC-HHHHHHHHHh
Q 035998 974 VLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPT-TQQLVSWLDS 1018 (1020)
Q Consensus 974 ~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs-~~evl~~L~~ 1018 (1020)
. ..........+.+++.+||+.||++||+ ++++.+.|.+
T Consensus 286 --~----~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~ 325 (681)
T 2pzi_A 286 --E----DDPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTG 325 (681)
T ss_dssp --T----TCHHHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHH
T ss_pred --c----cccccccCHHHHHHHhhhccCChhhCCCHHHHHHHHHHH
Confidence 0 0000112245889999999999999995 5556666554
No 293
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=100.00 E-value=5.6e-33 Score=305.97 Aligned_cols=228 Identities=21% Similarity=0.288 Sum_probs=177.1
Q ss_pred cCCCcC-CeeeccCCeEEEEEEe-CCCCEEEEEEecCCchhhHHHHHHHHHHH-HHcCCCccceEeeEEec----cCceE
Q 035998 742 NNFDQA-NIIGCGGFGLVYRATL-PDGRNVAIKRLSGDCGQMEREFRAEVEAL-SRAQHPNLVHLQGYCMH----KNDRL 814 (1020)
Q Consensus 742 ~~~~~~-~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l-~~l~h~niv~l~~~~~~----~~~~~ 814 (1020)
++|.+. +.||+|+||.||+|.. .+++.||+|++... ..+.+|++++ +..+||||+++++++.. ....+
T Consensus 17 ~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-----~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~ 91 (299)
T 3m2w_A 17 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLL 91 (299)
T ss_dssp GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEE
T ss_pred cchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEeccc-----HHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceEE
Confidence 457776 7899999999999986 46899999999753 3567788887 55699999999999876 66789
Q ss_pred EEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcC---CCCeEEeeccc
Q 035998 815 LIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDG---NFGAHLADFGL 891 (1020)
Q Consensus 815 lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~---~~~~kl~Dfg~ 891 (1020)
+||||+++|+|.+++... ....+++..++.++.|++.||+|||+. +|+||||||+||+++. ++.+||+|||+
T Consensus 92 lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~ 166 (299)
T 3m2w_A 92 IVMECLDGGELFSRIQDR--GDQAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLTDFGF 166 (299)
T ss_dssp EEECCCCSCBHHHHHHHC--TTCCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSTTCCEEECCCTT
T ss_pred EEEeecCCCcHHHHHHhc--cCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEecCCCCCcEEEecccc
Confidence 999999999999999874 234689999999999999999999999 9999999999999998 78899999999
Q ss_pred cccccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhccc
Q 035998 892 ARLILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRE 971 (1020)
Q Consensus 892 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~ 971 (1020)
++... +..++.++||||+||++|||++|+.||......... ....
T Consensus 167 a~~~~------------------------~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~-----------~~~~ 211 (299)
T 3m2w_A 167 AKETT------------------------GEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAIS-----------PGMK 211 (299)
T ss_dssp CEECT------------------------TCGGGGHHHHHHHHHHHHHHHHSSCSCCC------------------CCSC
T ss_pred ccccc------------------------cccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhhh-----------HHHH
Confidence 86542 234677999999999999999999999643321100 0000
Q ss_pred ccccCccccCc--cCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 972 SEVLDPFIYDK--QHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 972 ~~~~d~~~~~~--~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
........... ........+.+++.+||+.||++|||++|+++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~ 256 (299)
T 3m2w_A 212 TRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMN 256 (299)
T ss_dssp CSSCTTCCSSCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHHhhccccCCchhcccCCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 00000000000 00112346889999999999999999999987
No 294
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=100.00 E-value=1.2e-33 Score=316.87 Aligned_cols=241 Identities=16% Similarity=0.142 Sum_probs=183.2
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeCCCCEEEEEEecCCc--------hhhHHHHHHHHHHHHHcC---------CCccceE
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLPDGRNVAIKRLSGDC--------GQMEREFRAEVEALSRAQ---------HPNLVHL 803 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--------~~~~~~~~~E~~~l~~l~---------h~niv~l 803 (1020)
.++|++.+.||+|+||.||+|+. +|+.||||++.... ....+.+.+|++++++++ ||||+++
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l 97 (336)
T 2vuw_A 19 TEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGL 97 (336)
T ss_dssp HHHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCE
T ss_pred cccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhh
Confidence 45689999999999999999998 68999999997542 122367889999999886 6666666
Q ss_pred eeEE-----------------ec-------------cCceEEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHH
Q 035998 804 QGYC-----------------MH-------------KNDRLLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAAR 853 (1020)
Q Consensus 804 ~~~~-----------------~~-------------~~~~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~ 853 (1020)
.+++ .+ .+..++||||+++|++.+.+.+ ..+++..++.++.||+.
T Consensus 98 ~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~-----~~~~~~~~~~i~~qi~~ 172 (336)
T 2vuw_A 98 NSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT-----KLSSLATAKSILHQLTA 172 (336)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT-----TCCCHHHHHHHHHHHHH
T ss_pred cceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh-----cCCCHHHHHHHHHHHHH
Confidence 6554 32 6788999999999976655543 35799999999999999
Q ss_pred HHHHhH-hcCCCCeEecCCCCCCEEEcCCC--------------------CeEEeeccccccccCCCCcccccccccccC
Q 035998 854 GLAYLH-QSCEPHILHRDIKSSNILLDGNF--------------------GAHLADFGLARLILSPYDTHVTTDLVGTLG 912 (1020)
Q Consensus 854 ~L~~LH-~~~~~~ivH~Dlkp~NIll~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~ 912 (1020)
||+||| +. +|+||||||+|||++.++ .+||+|||+|+.... ....||+.
T Consensus 173 aL~~lH~~~---~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~-------~~~~gt~~ 242 (336)
T 2vuw_A 173 SLAVAEASL---RFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERD-------GIVVFCDV 242 (336)
T ss_dssp HHHHHHHHH---CCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEET-------TEEECCCC
T ss_pred HHHHHHHhC---CEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCC-------CcEEEeec
Confidence 999999 89 999999999999999887 899999999987643 13479999
Q ss_pred ccCccccCCCCCCchhhHHHHHHH-HHHHHcCCCCCCCCCCCCcccHHHHHH-HHHhhcccccccCccccCccCHHHHHH
Q 035998 913 YIPPEYGQASVATYKGDVYSFGVV-LLELLTGKRPMDMCKPKGSRDLISWVI-RMRQENRESEVLDPFIYDKQHDKEMLR 990 (1020)
Q Consensus 913 y~aPE~~~~~~~~~~~DvwSlGvi-l~elltg~~pf~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~ 990 (1020)
|+|||++.+.. +.++||||+|++ .+++++|..||.. ........ ......... .............+
T Consensus 243 y~aPE~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~~------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~s~~ 311 (336)
T 2vuw_A 243 SMDEDLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYSN------VLWLHYLTDKMLKQMTFK----TKCNTPAMKQIKRK 311 (336)
T ss_dssp TTCSGGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHHH------HHHHHHHHHHHHHTCCCS----SCCCSHHHHHHHHH
T ss_pred ccChhhhcCCC-ccceehhhhhCCCCcccccccCCCcc------hhhhhHHHHhhhhhhccC----cccchhhhhhcCHH
Confidence 99999998776 899999998776 7888889999842 00101111 111111111 11111123345667
Q ss_pred HHHHHhhccCCCCCCCCCHHHHH
Q 035998 991 VLDIACLCLSESPKVRPTTQQLV 1013 (1020)
Q Consensus 991 l~~li~~cl~~dP~~RPs~~evl 1013 (1020)
+.+++.+||+.| |++|++
T Consensus 312 ~~dli~~~L~~d-----sa~e~l 329 (336)
T 2vuw_A 312 IQEFHRTMLNFS-----SATDLL 329 (336)
T ss_dssp HHHHHHHGGGSS-----SHHHHH
T ss_pred HHHHHHHHhccC-----CHHHHH
Confidence 999999999976 999998
No 295
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=100.00 E-value=1.5e-33 Score=324.63 Aligned_cols=243 Identities=17% Similarity=0.184 Sum_probs=180.5
Q ss_pred ccCCCcCCeeeccCCeEEEEEEe-CCCCEEEEEEecCCch---hhHHHHHHHHHHHHHcCC-CccceE------------
Q 035998 741 TNNFDQANIIGCGGFGLVYRATL-PDGRNVAIKRLSGDCG---QMEREFRAEVEALSRAQH-PNLVHL------------ 803 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h-~niv~l------------ 803 (1020)
..+|...++||+|+||.||+|++ .+|+.||||++..... ...+.+.+|+.+++.++| +|...+
T Consensus 77 ~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 156 (413)
T 3dzo_A 77 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL 156 (413)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEE
T ss_pred ceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhh
Confidence 34577789999999999999995 4799999999884332 224678899999999977 322111
Q ss_pred ---------eeEEec-----cCceEEEEEeccCCChhhhhhhc---CCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCe
Q 035998 804 ---------QGYCMH-----KNDRLLIYSFMENGSLDYWLHEK---LDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHI 866 (1020)
Q Consensus 804 ---------~~~~~~-----~~~~~lv~e~~~~g~L~~~l~~~---~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~i 866 (1020)
..++.. ....+++|+++ +++|.+++... ......+++..++.++.|+++||+|||++ +|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~i 232 (413)
T 3dzo_A 157 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY---GL 232 (413)
T ss_dssp EECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHT---TE
T ss_pred cccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhC---Cc
Confidence 111111 12346677755 67998888522 22334678889999999999999999999 99
Q ss_pred EecCCCCCCEEEcCCCCeEEeeccccccccCCCCcccccccccccCccCcccc----------CCCCCCchhhHHHHHHH
Q 035998 867 LHRDIKSSNILLDGNFGAHLADFGLARLILSPYDTHVTTDLVGTLGYIPPEYG----------QASVATYKGDVYSFGVV 936 (1020)
Q Consensus 867 vH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~----------~~~~~~~~~DvwSlGvi 936 (1020)
+||||||+|||++.++.+||+|||+++..... .....| +.|+|||++ .+..++.++|||||||+
T Consensus 233 iHrDiKp~NILl~~~~~~kL~DFG~a~~~~~~-----~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvi 306 (413)
T 3dzo_A 233 VHTYLRPVDIVLDQRGGVFLTGFEHLVRDGAS-----AVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLA 306 (413)
T ss_dssp ECSCCCGGGEEECTTCCEEECCGGGCEETTEE-----ECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHH
T ss_pred ccCCcccceEEEecCCeEEEEeccceeecCCc-----cccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHH
Confidence 99999999999999999999999999865321 344567 999999988 66678999999999999
Q ss_pred HHHHHcCCCCCCCCCCCCcccHHHHHHHHHhhcccccccCccccCccCHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 035998 937 LLELLTGKRPMDMCKPKGSRDLISWVIRMRQENRESEVLDPFIYDKQHDKEMLRVLDIACLCLSESPKVRPTTQQLVS 1014 (1020)
Q Consensus 937 l~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1014 (1020)
+|||++|+.||........... .+... ... ...+.+++.+||+.||++||++.++++
T Consensus 307 l~elltg~~Pf~~~~~~~~~~~---------------~~~~~--~~~----~~~~~~li~~~l~~dP~~Rpt~~~~l~ 363 (413)
T 3dzo_A 307 IYWIWCADLPNTDDAALGGSEW---------------IFRSC--KNI----PQPVRALLEGFLRYPKEDRLLPLQAME 363 (413)
T ss_dssp HHHHHHSSCCCCTTGGGSCSGG---------------GGSSC--CCC----CHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred HHHHHHCCCCCCCcchhhhHHH---------------HHhhc--ccC----CHHHHHHHHHHccCChhhCcCHHHHHh
Confidence 9999999999975432221111 00000 011 246889999999999999999888865
No 296
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=6.9e-32 Score=301.93 Aligned_cols=267 Identities=21% Similarity=0.253 Sum_probs=125.1
Q ss_pred cccEEEccCCCCCCCCCCccccccccccccccccccccccchhhhhhcccccccccccccCCCCCcccccCCCccEEEcc
Q 035998 182 RIRVINLSVNYFSGTLSPGLGNCASLEHLCLGMNDLTGGIADDIFQLQKLRLLGLQDNQLSGKLSPSIADLSNLVRLDVS 261 (1020)
Q Consensus 182 ~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 261 (1020)
+|+.|+|++|.+++..|..|+++++|++|+|++|++++..|..|.++++|++|+|++|+++ .+|..+. ++|++|+++
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~ 131 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIH 131 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECC
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECC
Confidence 3444444444444333444444444444444444444444444444444444444444444 2232222 444455555
Q ss_pred CCcCcccCcccccCCcccceeeccccccc--ccCCCCCcCCcccccccccccccccccccCCCCCCCcCEEEcCCCccCC
Q 035998 262 SNNFSGNIPDVFAGLGEFQYLVAHSNRFT--GRIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNKFNG 339 (1020)
Q Consensus 262 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 339 (1020)
+|++++..+..|.++++|+.|++++|+++ +..|..+..+ +|+.|++++|++++. |..+. ++|++|++++|++++
T Consensus 132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l-~~~~~--~~L~~L~l~~n~i~~ 207 (332)
T 2ft3_A 132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI-PKDLP--ETLNELHLDHNKIQA 207 (332)
T ss_dssp SSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSC-CSSSC--SSCSCCBCCSSCCCC
T ss_pred CCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCcc-Ccccc--CCCCEEECCCCcCCc
Confidence 55444444444444444555555554443 2344444444 455555555554432 22221 345555555555554
Q ss_pred CCCCCCCCCCCCCeEecCCCcccccCcccccCCCCCCeeeCCCCCCcchhhHHHHHhhhcccchhhhhccccCCCCCCCc
Q 035998 340 PLPTNLPRCRKLKNINLARNNFSGQIPETYKNFESLSYLSLSNSSIYNLSSALQVLQQCRNLTTLVLTLNFRNEKLPTDP 419 (1020)
Q Consensus 340 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~i~~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 419 (1020)
..+..+..+++|+.|+|++|++++..+..+..+++|++|++++|+++.+|.. +.
T Consensus 208 ~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~---l~----------------------- 261 (332)
T 2ft3_A 208 IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG---LP----------------------- 261 (332)
T ss_dssp CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTT---GG-----------------------
T ss_pred cCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChh---hh-----------------------
Confidence 4444455555555555555555544444455555555555555544433321 11
Q ss_pred cccccCceEEEecccccccccchhhhc------CCCCcEEeccccccc--ccccccccCcCcCcEEeCCCCc
Q 035998 420 RLHFANLKVLVIASCGLRGSIPQWLRG------CSKLQLVDLSWNQLS--GTIPVWFGGFQDLFYLDLSNNT 483 (1020)
Q Consensus 420 ~~~~~~L~~L~l~~n~l~~~~p~~l~~------l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~Ls~N~ 483 (1020)
.+++|+.|++++|.+++..+..|.. ..+|+.|++++|.+. +..|.+|..+++|+.|+|++|+
T Consensus 262 --~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 262 --DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp --GCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred --cCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 1122223333333333333333322 356777788888776 5667777778888888887774
No 297
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.98 E-value=4.1e-36 Score=352.93 Aligned_cols=231 Identities=21% Similarity=0.217 Sum_probs=119.7
Q ss_pred CcceeeeccCccCCCCCccccccCCcccEEEccCCCCCC----CCCCccccccccccccccccccccccchhhhh-hc--
Q 035998 157 SIQVLDISSNSLNGSVPTSICKNSSRIRVINLSVNYFSG----TLSPGLGNCASLEHLCLGMNDLTGGIADDIFQ-LQ-- 229 (1020)
Q Consensus 157 ~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~----~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~-l~-- 229 (1020)
+|++|+|++|+++......++..+++|++|+|++|.++. .++..+..+++|++|+|++|.+++..+..+.. ++
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 445555555554422222333444555555555555543 23444555666666666666666444444432 33
Q ss_pred --ccccccccccccCC----CCCcccccCCCccEEEccCCcCcccCcccccC-----CcccceeecccccccccC----C
Q 035998 230 --KLRLLGLQDNQLSG----KLSPSIADLSNLVRLDVSSNNFSGNIPDVFAG-----LGEFQYLVAHSNRFTGRI----P 294 (1020)
Q Consensus 230 --~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~L~~N~l~~~~----p 294 (1020)
+|++|+|++|+++. .++..+..+++|++|+|++|.+++..+..+.. .++|++|++++|++++.. +
T Consensus 84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 163 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence 46666666666663 33556666667777777777666443333322 345666666666665432 3
Q ss_pred CCCcCCcccccccccccccccccccCCC-----CCCCcCEEEcCCCccCCC----CCCCCCCCCCCCeEecCCCcccccC
Q 035998 295 HSLSNSPTLNLLNLRNNSLDGSLLLNCP-----ALTNLTSLDLGTNKFNGP----LPTNLPRCRKLKNINLARNNFSGQI 365 (1020)
Q Consensus 295 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~-----~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~ 365 (1020)
..+..+++|+.|++++|.+++..+..+. ..++|++|+|++|++++. ++..+..+++|++|++++|++++..
T Consensus 164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 243 (461)
T 1z7x_W 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 243 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHH
Confidence 3344455666666666665543332221 134566666666665542 2444445555666666665554322
Q ss_pred -----cccccCCCCCCeeeCCCCCCcc
Q 035998 366 -----PETYKNFESLSYLSLSNSSIYN 387 (1020)
Q Consensus 366 -----p~~~~~l~~L~~L~l~~N~i~~ 387 (1020)
+..+..+++|++|++++|.++.
T Consensus 244 ~~~l~~~~~~~~~~L~~L~L~~n~l~~ 270 (461)
T 1z7x_W 244 MAELCPGLLHPSSRLRTLWIWECGITA 270 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred HHHHHHHHhcCCCCceEEECcCCCCCH
Confidence 1122235555555555555543
No 298
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=2.6e-31 Score=297.11 Aligned_cols=267 Identities=22% Similarity=0.257 Sum_probs=200.6
Q ss_pred CCCCcEEecCCCCCCCCCCccccCCCCCCeeeccCCCCCCCCCCcc-CCCCcceeeeccCccCCCCCccccccCCcccEE
Q 035998 108 LVQLRFLNLSHNLLKGTVPVSLVNLPNLEVLDLSSNDLSGPLPQTI-NLPSIQVLDISSNSLNGSVPTSICKNSSRIRVI 186 (1020)
Q Consensus 108 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L 186 (1020)
..+++.++++++.++ .+|..+. ++|++|+|++|++++.++..+ ++++|++|+|++|++++..|..+ ..+++|++|
T Consensus 30 ~c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L 105 (330)
T 1xku_A 30 QCHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF-APLVKLERL 105 (330)
T ss_dssp EEETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT-TTCTTCCEE
T ss_pred cCCCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHh-cCCCCCCEE
Confidence 346889999999998 6787664 689999999999998888777 79999999999999985445544 678888888
Q ss_pred EccCCCCCCCCCCccccccccccccccccccccccchhhhhhcccccccccccccCC--CCCcccccCCCccEEEccCCc
Q 035998 187 NLSVNYFSGTLSPGLGNCASLEHLCLGMNDLTGGIADDIFQLQKLRLLGLQDNQLSG--KLSPSIADLSNLVRLDVSSNN 264 (1020)
Q Consensus 187 ~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~Ls~N~ 264 (1020)
+|++|+++ .+|..+. ++|++|++++|++++..+..+.++++|++|++++|+++. ..+..+.++++|++|++++|.
T Consensus 106 ~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 106 YLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182 (330)
T ss_dssp ECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred ECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence 88888888 4565554 688888888888887777778888888888888888853 566778888888888888888
Q ss_pred CcccCcccccCCcccceeecccccccccCCCCCcCCcccccccccccccccccccCCCCCCCcCEEEcCCCccCCCCCCC
Q 035998 265 FSGNIPDVFAGLGEFQYLVAHSNRFTGRIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNKFNGPLPTN 344 (1020)
Q Consensus 265 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~ 344 (1020)
++. +|..+. ++|++|++++|++++..|..|..+++|+.|++++|.+++..+..+..+++|++|+|++|+++ .+|..
T Consensus 183 l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~ 258 (330)
T 1xku_A 183 ITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG 258 (330)
T ss_dssp CCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTT
T ss_pred ccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChh
Confidence 874 344332 67777777777777777777777777777777777777766666777777777777777777 66667
Q ss_pred CCCCCCCCeEecCCCcccccCcccccCC------CCCCeeeCCCCCC
Q 035998 345 LPRCRKLKNINLARNNFSGQIPETYKNF------ESLSYLSLSNSSI 385 (1020)
Q Consensus 345 l~~l~~L~~L~L~~N~l~~~~p~~~~~l------~~L~~L~l~~N~i 385 (1020)
+..+++|++|++++|++++..+..|... .+|+.|++++|++
T Consensus 259 l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 259 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp TTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred hccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcc
Confidence 7777777777777777776655555432 4556666666654
No 299
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=8.7e-35 Score=341.56 Aligned_cols=370 Identities=22% Similarity=0.148 Sum_probs=199.3
Q ss_pred ceEEEecCCCccccccccc-ccCCCCCcEEecCCCCCCC----CCCccccCCCCCCeeeccCCCCCCCCCCcc--CCC--
Q 035998 86 RVTGLFLYKRRLKGKLSES-LGNLVQLRFLNLSHNLLKG----TVPVSLVNLPNLEVLDLSSNDLSGPLPQTI--NLP-- 156 (1020)
Q Consensus 86 ~v~~l~l~~~~l~~~~~~~-l~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~--~l~-- 156 (1020)
+++.|+|+++.++...... +..+++|++|+|++|.+++ .++..+..+++|++|+|++|.++...+..+ .++
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 5666666666665543332 5566666666666666663 245556666666666666666654333222 233
Q ss_pred --CcceeeeccCccCCCCCccccccCCcccEEEccCCCCCCCCCCccccccccccccccccccccccchhhhh-----hc
Q 035998 157 --SIQVLDISSNSLNGSVPTSICKNSSRIRVINLSVNYFSGTLSPGLGNCASLEHLCLGMNDLTGGIADDIFQ-----LQ 229 (1020)
Q Consensus 157 --~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~-----l~ 229 (1020)
+|++|+|++|+++..-- ..++..+..+++|++|+|++|.+++..+..+.. .+
T Consensus 84 ~~~L~~L~L~~n~i~~~~~---------------------~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~ 142 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGC---------------------GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC 142 (461)
T ss_dssp TCCCCEEECTTSCCBGGGH---------------------HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred CCceeEEEccCCCCCHHHH---------------------HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCC
Confidence 45555555555542100 123444555555555555555555433333332 23
Q ss_pred ccccccccccccCCCC----CcccccCCCccEEEccCCcCcccCcccccC-----Ccccceeeccccccccc----CCCC
Q 035998 230 KLRLLGLQDNQLSGKL----SPSIADLSNLVRLDVSSNNFSGNIPDVFAG-----LGEFQYLVAHSNRFTGR----IPHS 296 (1020)
Q Consensus 230 ~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~L~~N~l~~~----~p~~ 296 (1020)
+|++|+|++|++++.. +..+..+++|++|++++|.+++..+..+.. .++|++|++++|++++. ++..
T Consensus 143 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 222 (461)
T 1z7x_W 143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI 222 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred cceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH
Confidence 4555555555555422 334444556666666666655433333321 34566666666655542 3444
Q ss_pred CcCCccccccccccccccccc-----ccCCCCCCCcCEEEcCCCccCCC----CCCCCCCCCCCCeEecCCCcccccCcc
Q 035998 297 LSNSPTLNLLNLRNNSLDGSL-----LLNCPALTNLTSLDLGTNKFNGP----LPTNLPRCRKLKNINLARNNFSGQIPE 367 (1020)
Q Consensus 297 ~~~l~~L~~L~L~~N~l~~~~-----~~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~p~ 367 (1020)
+..+++|+.|++++|.+++.. +..+..+++|++|+|++|++++. ++..+..+++|++|++++|++++..+.
T Consensus 223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 302 (461)
T 1z7x_W 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence 555566666666666655432 22223456666666666666642 444555566666777776666554433
Q ss_pred cccC-----CCCCCeeeCCCCCCcchhh--HHHHHhhhcccchhhhhccccCCCCCCCccccccCceEEEeccccccccc
Q 035998 368 TYKN-----FESLSYLSLSNSSIYNLSS--ALQVLQQCRNLTTLVLTLNFRNEKLPTDPRLHFANLKVLVIASCGLRGSI 440 (1020)
Q Consensus 368 ~~~~-----l~~L~~L~l~~N~i~~l~~--~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 440 (1020)
.+.. .++|++|++++|.++.... ....+.. +++|+.|++++|.+.+..
T Consensus 303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~-------------------------~~~L~~L~Ls~n~i~~~~ 357 (461)
T 1z7x_W 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQ-------------------------NRFLLELQISNNRLEDAG 357 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHH-------------------------CSSCCEEECCSSBCHHHH
T ss_pred HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhh-------------------------CCCccEEEccCCcccccc
Confidence 3332 2566777777766654321 1111222 234445555555555444
Q ss_pred chhhhc-----CCCCcEEecccccccc----cccccccCcCcCcEEeCCCCccccc--------CCCCCCCCcccccc
Q 035998 441 PQWLRG-----CSKLQLVDLSWNQLSG----TIPVWFGGFQDLFYLDLSNNTFTGE--------IPKNLTGLPSLITR 501 (1020)
Q Consensus 441 p~~l~~-----l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~--------~p~~~~~l~~L~~l 501 (1020)
+..+.. .++|+.|+|++|++++ .+|..+..+++|++|+|++|++++. +|.....++.|..+
T Consensus 358 ~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~ 435 (461)
T 1z7x_W 358 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLY 435 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeec
Confidence 443432 5677788888887775 6677777777788888888877643 44444455554433
No 300
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=2.1e-31 Score=294.50 Aligned_cols=289 Identities=21% Similarity=0.206 Sum_probs=173.7
Q ss_pred CCCCCCcCceEEcCCCCCCCCCCCCCCCceEEEecCCCcccccccccccCCCCCcEEecCCCCCCC--CCCccccCCCCC
Q 035998 58 SSSDCCHWVGITCNSSSSLGLNDSIGSGRVTGLFLYKRRLKGKLSESLGNLVQLRFLNLSHNLLKG--TVPVSLVNLPNL 135 (1020)
Q Consensus 58 ~~~~~C~w~gv~C~~~~~~~~~~~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L 135 (1020)
+..+.|.|.+|.|+..+.+.+|...+ ..++.|+|++|.++...+..++++++|++|+|++|.++. .+|..+..+++|
T Consensus 2 P~~C~C~~~~l~c~~~~l~~ip~~~~-~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L 80 (306)
T 2z66_A 2 PSRCSCSGTEIRCNSKGLTSVPTGIP-SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSL 80 (306)
T ss_dssp CTTCEEETTEEECCSSCCSSCCSCCC-TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCC
T ss_pred cCCCeeCCCEEEcCCCCcccCCCCCC-CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccccccccc
Confidence 44566999999999877766666543 355556665555553333335555555555555555552 224444555555
Q ss_pred CeeeccCCCCCCCCCCccCCCCcceeeeccCccCCCCCccccccCCcccEEEccCCCCCCCCC-Cccccccccccccccc
Q 035998 136 EVLDLSSNDLSGPLPQTINLPSIQVLDISSNSLNGSVPTSICKNSSRIRVINLSVNYFSGTLS-PGLGNCASLEHLCLGM 214 (1020)
Q Consensus 136 ~~L~L~~n~l~~~~p~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~-~~l~~l~~L~~L~L~~ 214 (1020)
++|+|++|.++..++....+++|++|+|++|+++ +..+ ..+.++++|++|++++
T Consensus 81 ~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~-------------------------~~~~~~~~~~l~~L~~L~l~~ 135 (306)
T 2z66_A 81 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK-------------------------QMSEFSVFLSLRNLIYLDISH 135 (306)
T ss_dssp CEEECCSCSEEEEEEEEETCTTCCEEECTTSEEE-------------------------SSTTTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCccccChhhcCCCCCCCEEECCCCccc-------------------------ccccchhhhhccCCCEEECCC
Confidence 5555555555532222224555555555555554 3332 3445555555555555
Q ss_pred cccccccchhhhhhcccccccccccccCC-CCCcccccCCCccEEEccCCcCcccCcccccCCcccceeecccccccccC
Q 035998 215 NDLTGGIADDIFQLQKLRLLGLQDNQLSG-KLSPSIADLSNLVRLDVSSNNFSGNIPDVFAGLGEFQYLVAHSNRFTGRI 293 (1020)
Q Consensus 215 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 293 (1020)
|.+++..+..+..+++|++|++++|++++ ..|..+..+++|++|++++|++++..|..|..+++|+.|++++|++++..
T Consensus 136 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 215 (306)
T 2z66_A 136 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 215 (306)
T ss_dssp SCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred CcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccC
Confidence 55555555555555555566666665554 35556666666666666666666666666666666666666666666666
Q ss_pred CCCCcCCcccccccccccccccccccCCCCCC-CcCEEEcCCCccCCCCCC--CCCCCCCCCeEecCCCcccccCccccc
Q 035998 294 PHSLSNSPTLNLLNLRNNSLDGSLLLNCPALT-NLTSLDLGTNKFNGPLPT--NLPRCRKLKNINLARNNFSGQIPETYK 370 (1020)
Q Consensus 294 p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~L~~N~l~~~~p~~~~ 370 (1020)
+..+..+++|+.|++++|++++..+..+..++ +|++|+|++|.+++..+. ....+.+++.+.+..+.+....|..+.
T Consensus 216 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~ 295 (306)
T 2z66_A 216 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQ 295 (306)
T ss_dssp SGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGT
T ss_pred hhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhC
Confidence 65666677777777777777777776676663 788888888877753221 112234555666777788877787766
Q ss_pred CC
Q 035998 371 NF 372 (1020)
Q Consensus 371 ~l 372 (1020)
+.
T Consensus 296 g~ 297 (306)
T 2z66_A 296 GM 297 (306)
T ss_dssp TC
T ss_pred Cc
Confidence 54
No 301
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=7.9e-31 Score=296.03 Aligned_cols=286 Identities=20% Similarity=0.209 Sum_probs=168.1
Q ss_pred CCCCCCcCceE-EcCCCCCCCCCCCCCCCceEEEecCCCcccccccccccCCCCCcEEecCCCCCCCCCCccccCCCCCC
Q 035998 58 SSSDCCHWVGI-TCNSSSSLGLNDSIGSGRVTGLFLYKRRLKGKLSESLGNLVQLRFLNLSHNLLKGTVPVSLVNLPNLE 136 (1020)
Q Consensus 58 ~~~~~C~w~gv-~C~~~~~~~~~~~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 136 (1020)
...++|.|.|+ .|+....+.+|.... .+++.|++++|.+++..+..++++++|++|+|++|++++..|..|+++++|+
T Consensus 25 ~~~~~C~~~~~c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 25 QASLSCDRNGICKGSSGSLNSIPSGLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103 (353)
T ss_dssp --CCEECTTSEEECCSTTCSSCCTTCC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ccCCCCCCCeEeeCCCCCccccccccc-ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence 34578999997 333444555555443 3566666666666655455566666666666666666655555566666666
Q ss_pred eeeccCCCCCCCCCCcc-CCCCcceeeeccCccCCCCCc-cccccCCcccEEEccCC-CCCCCCCCcccccccccccccc
Q 035998 137 VLDLSSNDLSGPLPQTI-NLPSIQVLDISSNSLNGSVPT-SICKNSSRIRVINLSVN-YFSGTLSPGLGNCASLEHLCLG 213 (1020)
Q Consensus 137 ~L~L~~n~l~~~~p~~~-~l~~L~~L~Ls~N~l~~~ip~-~~~~~~~~L~~L~L~~N-~l~~~~~~~l~~l~~L~~L~L~ 213 (1020)
+|+|++|++++.++..+ ++++|++|+|++|+++ .+|. ..+..+++|++|++++| .+.+..+..|+++++|++|+++
T Consensus 104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 182 (353)
T 2z80_A 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID 182 (353)
T ss_dssp EEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred EEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECC
Confidence 66666666665544434 5666666666666665 4444 44455555555555555 3444444455555555555555
Q ss_pred ccccccccchhhhhhcccccccccccccCCCCCcccccCCCccEEEccCCcCcccCcccccCCcccceeecccccccccC
Q 035998 214 MNDLTGGIADDIFQLQKLRLLGLQDNQLSGKLSPSIADLSNLVRLDVSSNNFSGNIPDVFAGLGEFQYLVAHSNRFTGRI 293 (1020)
Q Consensus 214 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 293 (1020)
+|++++..|..+..+++|++|++++|+++...+..+..+++|++|++++|.+++..+..+..
T Consensus 183 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~------------------ 244 (353)
T 2z80_A 183 ASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST------------------ 244 (353)
T ss_dssp ETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC----------------------
T ss_pred CCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccc------------------
Confidence 55555555555555555555555555554222222333455555555555555433322211
Q ss_pred CCCCcCCccccccccccccccc----ccccCCCCCCCcCEEEcCCCccCCCCCCCCCCCCCCCeEecCCCcccccCc
Q 035998 294 PHSLSNSPTLNLLNLRNNSLDG----SLLLNCPALTNLTSLDLGTNKFNGPLPTNLPRCRKLKNINLARNNFSGQIP 366 (1020)
Q Consensus 294 p~~~~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 366 (1020)
....+.++.++|++|.+++ .+|..+..+++|++|+|++|+++...+..|..+++|++|+|++|++++..|
T Consensus 245 ---~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 245 ---GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp -----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ---ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 1123445556666665554 345667788999999999999994444446899999999999999997655
No 302
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=3.8e-33 Score=338.57 Aligned_cols=430 Identities=13% Similarity=0.084 Sum_probs=211.7
Q ss_pred cccccccCCCCCcEEecCCCCC---CCCCCcccc------------CCCCCCeeeccCCCCCCCCCCcc-C-CCC-ccee
Q 035998 100 KLSESLGNLVQLRFLNLSHNLL---KGTVPVSLV------------NLPNLEVLDLSSNDLSGPLPQTI-N-LPS-IQVL 161 (1020)
Q Consensus 100 ~~~~~l~~l~~L~~L~L~~n~l---~~~~p~~l~------------~l~~L~~L~L~~n~l~~~~p~~~-~-l~~-L~~L 161 (1020)
..+..+..+++|++|+|+++.. .+.+|..++ .+++|++|+|++|.+++..+..+ . +++ |++|
T Consensus 64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L 143 (592)
T 3ogk_B 64 TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL 143 (592)
T ss_dssp CHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred ChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence 3445567788899999987532 134554443 56677777777776665444433 2 233 6666
Q ss_pred eeccCc-cCCCCCccccccCCcccEEEccCCCCCCCCCCccccccccccccccccccccccchhhhhhcccccccccccc
Q 035998 162 DISSNS-LNGSVPTSICKNSSRIRVINLSVNYFSGTLSPGLGNCASLEHLCLGMNDLTGGIADDIFQLQKLRLLGLQDNQ 240 (1020)
Q Consensus 162 ~Ls~N~-l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 240 (1020)
+|++|. ++......+...+++|++|+|++|.+++....+ ++..+..+++|++|++++|.
T Consensus 144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~--------------------l~~~~~~~~~L~~L~L~~n~ 203 (592)
T 3ogk_B 144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKW--------------------LHELAQHNTSLEVLNFYMTE 203 (592)
T ss_dssp EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHH--------------------HHHHHHHCCCCCEEECTTCC
T ss_pred ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhH--------------------HHHHHhcCCCccEEEeeccC
Confidence 666664 110000111223445555555555444331110 22233344455555555555
Q ss_pred cCCC----CCcccccCCCccEEEccCCcCcccCcccccCCcccceeeccccccc---ccCCCCCcCCccccccccccccc
Q 035998 241 LSGK----LSPSIADLSNLVRLDVSSNNFSGNIPDVFAGLGEFQYLVAHSNRFT---GRIPHSLSNSPTLNLLNLRNNSL 313 (1020)
Q Consensus 241 l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~---~~~p~~~~~l~~L~~L~L~~N~l 313 (1020)
+++. ++..+.++++|++|++++|.+.+ +|..+..+++|+.|+++.+... +..+..+..+++|+.|+++++..
T Consensus 204 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 282 (592)
T 3ogk_B 204 FAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP 282 (592)
T ss_dssp CSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT
T ss_pred CCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch
Confidence 4421 12223344555555555555543 3444555555555555432211 22334455566666666665432
Q ss_pred ccccccCCCCCCCcCEEEcCCCccCCCCC-CCCCCCCCCCeEecCCCccc-ccCcccccCCCCCCeeeCCC---------
Q 035998 314 DGSLLLNCPALTNLTSLDLGTNKFNGPLP-TNLPRCRKLKNINLARNNFS-GQIPETYKNFESLSYLSLSN--------- 382 (1020)
Q Consensus 314 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~l~~--------- 382 (1020)
..++..+..+++|++|+|++|.+++... ..+..+++|++|+++ |.+. +.++..+..+++|++|++++
T Consensus 283 -~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~ 360 (592)
T 3ogk_B 283 -NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMED 360 (592)
T ss_dssp -TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSS
T ss_pred -hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCcccccccc
Confidence 2344455556677777777776553322 224566777777777 3333 23333445667777777772
Q ss_pred --CCCcchhhHHHHHhhhcccchhhhhccccCCCCCCCccccccCceEEEecccccccccchhhhc-CCCCcEEecc---
Q 035998 383 --SSIYNLSSALQVLQQCRNLTTLVLTLNFRNEKLPTDPRLHFANLKVLVIASCGLRGSIPQWLRG-CSKLQLVDLS--- 456 (1020)
Q Consensus 383 --N~i~~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~-l~~L~~L~Ls--- 456 (1020)
|.++.... ..... .+++|+.|++..|++++..+..+.. +++|+.|+++
T Consensus 361 ~~~~~~~~~~-~~l~~-------------------------~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 414 (592)
T 3ogk_B 361 EEGLVSQRGL-IALAQ-------------------------GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLD 414 (592)
T ss_dssp TTCCCCHHHH-HHHHH-------------------------HCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECS
T ss_pred ccCccCHHHH-HHHHh-------------------------hCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecC
Confidence 44432210 00111 1234444455445555554445544 6666666664
Q ss_pred -ccccccc-----ccccccCcCcCcEEeCCCCc--ccccCCCCCCC-CcccccccCcCCCCCCCcccceeeccccccccc
Q 035998 457 -WNQLSGT-----IPVWFGGFQDLFYLDLSNNT--FTGEIPKNLTG-LPSLITRNISLEEPSPDFPFFMRRNVSARGLQY 527 (1020)
Q Consensus 457 -~N~l~~~-----~p~~~~~l~~L~~L~Ls~N~--l~~~~p~~~~~-l~~L~~l~~s~~~~~~~~~~~~~~~~~~~~l~~ 527 (1020)
.|++++. ++..+.++++|++|+|++|. +++..+..+.. +++|
T Consensus 415 ~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L----------------------------- 465 (592)
T 3ogk_B 415 REERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNV----------------------------- 465 (592)
T ss_dssp CCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTC-----------------------------
T ss_pred CCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccc-----------------------------
Confidence 5556542 33345556666666665432 33222211110 1111
Q ss_pred ccccCCCCeeecccCccccC-CCccccCCCcceEEEecCCcceec-cCccccCCCcccEEEccCCcccccCCccc-cccc
Q 035998 528 NQIWSFPPTIDLSLNRLDGS-IWPEFGNLKKLHVFDLKHNNLSGP-IPSELTGMTSLETLDLSYNNLSGAIPISL-EKLS 604 (1020)
Q Consensus 528 n~~~~~~~~l~Ls~N~l~~~-~~~~~~~L~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l-~~l~ 604 (1020)
+.|++++|++++. ++..+.++++|+.|+|++|.+++. ++..+..+++|++|+|++|++++.-...+ ..++
T Consensus 466 -------~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p 538 (592)
T 3ogk_B 466 -------RWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARP 538 (592)
T ss_dssp -------CEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCT
T ss_pred -------eEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCC
Confidence 2334444444432 222335566677777777776543 33344556677777777777664422222 2344
Q ss_pred cccccccccc
Q 035998 605 FLSKFSVANN 614 (1020)
Q Consensus 605 ~L~~l~ls~N 614 (1020)
.+....+..+
T Consensus 539 ~l~~~~~~~~ 548 (592)
T 3ogk_B 539 YWNIELIPSR 548 (592)
T ss_dssp TEEEEEECCC
T ss_pred CcEEEEecCc
Confidence 4544444443
No 303
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=4e-29 Score=290.91 Aligned_cols=254 Identities=24% Similarity=0.256 Sum_probs=175.1
Q ss_pred CCCCCCCc--CceEEcCCCCCCCCCCCCCCCceEEEecCCCcccccccccccCCCCCcEEecCCCCCCCCCCccccCCCC
Q 035998 57 ASSSDCCH--WVGITCNSSSSLGLNDSIGSGRVTGLFLYKRRLKGKLSESLGNLVQLRFLNLSHNLLKGTVPVSLVNLPN 134 (1020)
Q Consensus 57 ~~~~~~C~--w~gv~C~~~~~~~~~~~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 134 (1020)
++..+.|. |..|.|.....+.+|...+ ..++.|+|++|.+++..+..|.++++|++|+|++|++++..+..|.++++
T Consensus 35 Cp~~C~C~~~~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~ 113 (440)
T 3zyj_A 35 CPSVCSCSNQFSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLAN 113 (440)
T ss_dssp CCSSSEECTTSCEEECCSCCCSSCCSCCC-TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSS
T ss_pred CCCCCEeCCCCCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCcc
Confidence 44445564 7789999887777776654 35566666666666655566666666666666666666555555666666
Q ss_pred CCeeeccCCCCCCCCCCcc-CCCCcceeeeccCccCCCCCccccccCCcccEEEccCCCCCCCCCCcccccccccccccc
Q 035998 135 LEVLDLSSNDLSGPLPQTI-NLPSIQVLDISSNSLNGSVPTSICKNSSRIRVINLSVNYFSGTLSPGLGNCASLEHLCLG 213 (1020)
Q Consensus 135 L~~L~L~~n~l~~~~p~~~-~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~ 213 (1020)
|++|+|++|+|++.++..+ .+++|++|+|++|+++ ...+..|.++++|++|+|+
T Consensus 114 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-------------------------~~~~~~~~~l~~L~~L~l~ 168 (440)
T 3zyj_A 114 LNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-------------------------SIPSYAFNRIPSLRRLDLG 168 (440)
T ss_dssp CCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC-------------------------EECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCcCCeeCHhHhhccccCceeeCCCCccc-------------------------ccCHHHhhhCcccCEeCCC
Confidence 6666666666665555444 4555555555555554 3334445555555555555
Q ss_pred cc-ccccccchhhhhhcccccccccccccCCCCCcccccCCCccEEEccCCcCcccCcccccCCcccceeeccccccccc
Q 035998 214 MN-DLTGGIADDIFQLQKLRLLGLQDNQLSGKLSPSIADLSNLVRLDVSSNNFSGNIPDVFAGLGEFQYLVAHSNRFTGR 292 (1020)
Q Consensus 214 ~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 292 (1020)
+| .++...+..|.++++|++|+|++|+++ .+| .+..+++|++|+|++|++++..|..|.++++|+.|++++|++++.
T Consensus 169 ~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 246 (440)
T 3zyj_A 169 ELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI 246 (440)
T ss_dssp CCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred CCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEE
Confidence 53 333333335566666666667777666 333 467778888888888888888888888888888888888888888
Q ss_pred CCCCCcCCcccccccccccccccccccCCCCCCCcCEEEcCCCccC
Q 035998 293 IPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNKFN 338 (1020)
Q Consensus 293 ~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 338 (1020)
.+..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|.+.
T Consensus 247 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 247 ERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred ChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 8888888888888999988888888888888899999999999886
No 304
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=3.8e-29 Score=292.17 Aligned_cols=254 Identities=21% Similarity=0.243 Sum_probs=174.3
Q ss_pred CCCCCCCc--CceEEcCCCCCCCCCCCCCCCceEEEecCCCcccccccccccCCCCCcEEecCCCCCCCCCCccccCCCC
Q 035998 57 ASSSDCCH--WVGITCNSSSSLGLNDSIGSGRVTGLFLYKRRLKGKLSESLGNLVQLRFLNLSHNLLKGTVPVSLVNLPN 134 (1020)
Q Consensus 57 ~~~~~~C~--w~gv~C~~~~~~~~~~~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 134 (1020)
++..+.|. |..|.|+..+.+.+|.+.+ .+++.|+|++|++++..+..|+++++|++|+|++|++++..|..|.++++
T Consensus 46 Cp~~C~C~~~~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 124 (452)
T 3zyi_A 46 CPSVCSCSNQFSKVVCTRRGLSEVPQGIP-SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLAS 124 (452)
T ss_dssp CCTTSEECSSSCEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred CCCCCEECCCCcEEEECCCCcCccCCCCC-CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCccc
Confidence 45555575 6899999887777766554 35555666666665555555566666666666666655555555555555
Q ss_pred CCeeeccCCCCCCCCCCcc-CCCCcceeeeccCccCCCCCccccccCCcccEEEccCCCCCCCCCCcccccccccccccc
Q 035998 135 LEVLDLSSNDLSGPLPQTI-NLPSIQVLDISSNSLNGSVPTSICKNSSRIRVINLSVNYFSGTLSPGLGNCASLEHLCLG 213 (1020)
Q Consensus 135 L~~L~L~~n~l~~~~p~~~-~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~ 213 (1020)
|++|+|++|+|++.++..+ .+++|++|+|++|++ +...+..|.++++|++|+|+
T Consensus 125 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l-------------------------~~~~~~~~~~l~~L~~L~l~ 179 (452)
T 3zyi_A 125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPI-------------------------ESIPSYAFNRVPSLMRLDLG 179 (452)
T ss_dssp CCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCC-------------------------CEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCcCCccChhhhcccCCCCEEECCCCCc-------------------------ceeCHhHHhcCCcccEEeCC
Confidence 6666665555555544444 455555555555555 43444455555666666666
Q ss_pred c-cccccccchhhhhhcccccccccccccCCCCCcccccCCCccEEEccCCcCcccCcccccCCcccceeeccccccccc
Q 035998 214 M-NDLTGGIADDIFQLQKLRLLGLQDNQLSGKLSPSIADLSNLVRLDVSSNNFSGNIPDVFAGLGEFQYLVAHSNRFTGR 292 (1020)
Q Consensus 214 ~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 292 (1020)
+ |.++...+..|.++++|++|+|++|++++. | .+..+++|++|+|++|++++..|..|.++++|+.|++++|++++.
T Consensus 180 ~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 257 (452)
T 3zyi_A 180 ELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI 257 (452)
T ss_dssp CCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEE
T ss_pred CCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceE
Confidence 5 333333334566667777777777777643 3 467788888888888888888888888888888888888888888
Q ss_pred CCCCCcCCcccccccccccccccccccCCCCCCCcCEEEcCCCccC
Q 035998 293 IPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNKFN 338 (1020)
Q Consensus 293 ~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 338 (1020)
.|..|.++++|+.|+|++|++++..+..+..+++|+.|+|++|.+.
T Consensus 258 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 258 ERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 8888888889999999999998888888888999999999999886
No 305
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=5.1e-30 Score=289.41 Aligned_cols=278 Identities=22% Similarity=0.228 Sum_probs=139.1
Q ss_pred eeeeccCccCCCCCccccccCCcccEEEccCCCCCCCCCCccccccccccccccccccccccchhhhhhccccccccccc
Q 035998 160 VLDISSNSLNGSVPTSICKNSSRIRVINLSVNYFSGTLSPGLGNCASLEHLCLGMNDLTGGIADDIFQLQKLRLLGLQDN 239 (1020)
Q Consensus 160 ~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 239 (1020)
..++++|.++ .+|..++ ++|++|++++|++++..+..|+++++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus 35 ~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (353)
T 2z80_A 35 ICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110 (353)
T ss_dssp EEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC
Confidence 3444444444 4444332 24444555555544433334555555555555555555444444555555555555555
Q ss_pred ccCCCCCcccccCCCccEEEccCCcCcccCc-ccccCCcccceeecccc-cccccCCCCCcCCccccccccccccccccc
Q 035998 240 QLSGKLSPSIADLSNLVRLDVSSNNFSGNIP-DVFAGLGEFQYLVAHSN-RFTGRIPHSLSNSPTLNLLNLRNNSLDGSL 317 (1020)
Q Consensus 240 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 317 (1020)
++++..+..|.++++|++|++++|++++..+ ..|..+++|++|++++| .+++..+..|.++++|+.|++++|++++..
T Consensus 111 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 190 (353)
T 2z80_A 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE 190 (353)
T ss_dssp CCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred cCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccC
Confidence 5553333334455555555555555543322 24444444444444444 234333444444444444444444444444
Q ss_pred ccCCCCCCCcCEEEcCCCccCCCCCCCCCCCCCCCeEecCCCcccccCccccc---CCCCCCeeeCCCCCCcchhhHHHH
Q 035998 318 LLNCPALTNLTSLDLGTNKFNGPLPTNLPRCRKLKNINLARNNFSGQIPETYK---NFESLSYLSLSNSSIYNLSSALQV 394 (1020)
Q Consensus 318 ~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~---~l~~L~~L~l~~N~i~~l~~~~~~ 394 (1020)
+..+..+++|++|++++|+++...+..+..+++|+.|++++|++++..+..+. ....++.++++++.+..
T Consensus 191 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~------- 263 (353)
T 2z80_A 191 PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD------- 263 (353)
T ss_dssp TTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCH-------
T ss_pred HHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccC-------
Confidence 44444444444444444444321111122234444444444444433222211 12233334443333221
Q ss_pred HhhhcccchhhhhccccCCCCCCCccccccCceEEEecccccccccchhhhcCCCCcEEeccccccccccccc-ccCcCc
Q 035998 395 LQQCRNLTTLVLTLNFRNEKLPTDPRLHFANLKVLVIASCGLRGSIPQWLRGCSKLQLVDLSWNQLSGTIPVW-FGGFQD 473 (1020)
Q Consensus 395 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~ 473 (1020)
+.+. .+|.++..+++|+.|+|++|+|+ .+|.. |..+++
T Consensus 264 ---------------------------------------~~l~-~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~ 302 (353)
T 2z80_A 264 ---------------------------------------ESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTS 302 (353)
T ss_dssp ---------------------------------------HHHH-HHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTT
T ss_pred ---------------------------------------cchh-hhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCC
Confidence 1111 46778889999999999999999 55555 689999
Q ss_pred CcEEeCCCCcccccCC
Q 035998 474 LFYLDLSNNTFTGEIP 489 (1020)
Q Consensus 474 L~~L~Ls~N~l~~~~p 489 (1020)
|++|+|++|++++..|
T Consensus 303 L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 303 LQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCEEECCSSCBCCCHH
T ss_pred CCEEEeeCCCccCcCC
Confidence 9999999999986554
No 306
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=3.4e-29 Score=276.74 Aligned_cols=221 Identities=26% Similarity=0.283 Sum_probs=127.2
Q ss_pred eeeeccCccCCCCCccccccCCcccEEEccCCCCCCCCCCcccccccccccccccccccc--ccchhhhhhccccccccc
Q 035998 160 VLDISSNSLNGSVPTSICKNSSRIRVINLSVNYFSGTLSPGLGNCASLEHLCLGMNDLTG--GIADDIFQLQKLRLLGLQ 237 (1020)
Q Consensus 160 ~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~ 237 (1020)
.++++++.++ .+|..+. ++|+.|+|++|+++...+..|+++++|++|+|++|+++. ..+..+..+++|++|+|+
T Consensus 11 ~l~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 11 EIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp EEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred EEEcCCCCcc-cCCCCCC---CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 3444444444 4444332 345555555555553333345556666666666666552 224555566666666666
Q ss_pred ccccCCCCCcccccCCCccEEEccCCcCcccCc-ccccCCcccceeecccccccccCCCCCcCCccccccccccccccc-
Q 035998 238 DNQLSGKLSPSIADLSNLVRLDVSSNNFSGNIP-DVFAGLGEFQYLVAHSNRFTGRIPHSLSNSPTLNLLNLRNNSLDG- 315 (1020)
Q Consensus 238 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~- 315 (1020)
+|+++ .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|++++..+..+.++++|++|++++|.+++
T Consensus 87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp SCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 66665 345556666666666666666665443 456666666666666666666666666666666666666666654
Q ss_pred ccccCCCCCCCcCEEEcCCCccCCCCCCCCCCCCCCCeEecCCCcccccCcccccCCCCCCeeeCCCCCC
Q 035998 316 SLLLNCPALTNLTSLDLGTNKFNGPLPTNLPRCRKLKNINLARNNFSGQIPETYKNFESLSYLSLSNSSI 385 (1020)
Q Consensus 316 ~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~i 385 (1020)
..|..+..+++|++|+|++|++++..|..+..+++|++|+|++|++++..+..+..+++|++|++++|++
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCC
Confidence 4455556666666666666666655555666666666666666666655555555555555555555553
No 307
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=3.3e-28 Score=291.03 Aligned_cols=289 Identities=23% Similarity=0.276 Sum_probs=233.8
Q ss_pred CCCCCCCCCCCcCceEEcCCCCCCCCCCCCCCCceEEEecCCCcccccccccccCCCCCcEEecCCCCCCCCCCccccCC
Q 035998 53 WGTNASSSDCCHWVGITCNSSSSLGLNDSIGSGRVTGLFLYKRRLKGKLSESLGNLVQLRFLNLSHNLLKGTVPVSLVNL 132 (1020)
Q Consensus 53 ~~~~~~~~~~C~w~gv~C~~~~~~~~~~~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 132 (1020)
|..|..+.+||.|.|..|.-... .......++.|++++++++ .+|..+. ++|++|+|++|+|+ .+|. .+
T Consensus 12 w~~W~~~~~~~~~~~r~~~~~~~----~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l 80 (622)
T 3g06_A 12 WSAWRRAAPAEESRGRAAVVQKM----RACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LP 80 (622)
T ss_dssp HHHHHHTCCGGGHHHHHHHHHHH----HHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CC
T ss_pred HHHHHhcCCcchhccccccCccc----ccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cC
Confidence 43333456899997743210000 0000135889999999998 7787776 89999999999999 6776 57
Q ss_pred CCCCeeeccCCCCCCCCCCccCCCCcceeeeccCccCCCCCccccccCCcccEEEccCCCCCCCCCCccccccccccccc
Q 035998 133 PNLEVLDLSSNDLSGPLPQTINLPSIQVLDISSNSLNGSVPTSICKNSSRIRVINLSVNYFSGTLSPGLGNCASLEHLCL 212 (1020)
Q Consensus 133 ~~L~~L~L~~n~l~~~~p~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L 212 (1020)
++|++|+|++|+|++.++ .+++|++|+|++|+++ .+|. .+++|+.|++++|++++ +|.. +++|++|+|
T Consensus 81 ~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~-~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~L 148 (622)
T 3g06_A 81 PELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLT-HLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSV 148 (622)
T ss_dssp TTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCC-CCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEEC
T ss_pred CCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCC-CCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEEC
Confidence 999999999999996544 7899999999999998 5666 46889999999999995 5654 489999999
Q ss_pred cccccccccchhhhhhcccccccccccccCCCCCcccccCCCccEEEccCCcCcccCcccccCCcccceeeccccccccc
Q 035998 213 GMNDLTGGIADDIFQLQKLRLLGLQDNQLSGKLSPSIADLSNLVRLDVSSNNFSGNIPDVFAGLGEFQYLVAHSNRFTGR 292 (1020)
Q Consensus 213 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 292 (1020)
++|++++ +|. .+.+|+.|++++|+|++ +| ..+++|+.|++++|+|++ +|.. +++|+.|++++|+++.
T Consensus 149 s~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~- 215 (622)
T 3g06_A 149 SDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS- 215 (622)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-
T ss_pred cCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccc-
Confidence 9999995 444 35789999999999995 55 457899999999999996 4443 4789999999999995
Q ss_pred CCCCCcCCcccccccccccccccccccCCCCCCCcCEEEcCCCccCCCCCCCCCCCCCCCeEecCCCcccccCcccccCC
Q 035998 293 IPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNKFNGPLPTNLPRCRKLKNINLARNNFSGQIPETYKNF 372 (1020)
Q Consensus 293 ~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l 372 (1020)
+|.. +++|+.|+|++|++++.. ..+++|++|+|++|+|+ .+|. .+++|+.|+|++|+|+ .+|..+.++
T Consensus 216 l~~~---~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l 283 (622)
T 3g06_A 216 LPAL---PSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHL 283 (622)
T ss_dssp CCCC---CTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGS
T ss_pred cCCC---CCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhc
Confidence 4443 478999999999999743 45689999999999999 5665 5689999999999999 778999999
Q ss_pred CCCCeeeCCCCCCcchh
Q 035998 373 ESLSYLSLSNSSIYNLS 389 (1020)
Q Consensus 373 ~~L~~L~l~~N~i~~l~ 389 (1020)
++|+.|+|++|+++...
T Consensus 284 ~~L~~L~L~~N~l~~~~ 300 (622)
T 3g06_A 284 SSETTVNLEGNPLSERT 300 (622)
T ss_dssp CTTCEEECCSCCCCHHH
T ss_pred cccCEEEecCCCCCCcC
Confidence 99999999999998654
No 308
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=2.5e-28 Score=266.76 Aligned_cols=225 Identities=24% Similarity=0.263 Sum_probs=179.9
Q ss_pred ceeeeccCccCCCCCccccccCCcccEEEccCCCCCCCCCCccccccccccccccccccccccchhhhhhcccccccccc
Q 035998 159 QVLDISSNSLNGSVPTSICKNSSRIRVINLSVNYFSGTLSPGLGNCASLEHLCLGMNDLTGGIADDIFQLQKLRLLGLQD 238 (1020)
Q Consensus 159 ~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 238 (1020)
++++.+++.++ .+|..+ .++|+.|+|++|.+++..+..|+++++|++|+|++|.+++..|..|..+++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 45555555555 555543 35677777777777766666777788888888888888777777788888888888888
Q ss_pred cc-cCCCCCcccccCCCccEEEccCCcCcccCcccccCCcccceeecccccccccCCCCCcCCccccccccccccccccc
Q 035998 239 NQ-LSGKLSPSIADLSNLVRLDVSSNNFSGNIPDVFAGLGEFQYLVAHSNRFTGRIPHSLSNSPTLNLLNLRNNSLDGSL 317 (1020)
Q Consensus 239 N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 317 (1020)
|+ ++...|..+..+++|++|++++|.+++..|..|.++++|++|++++|++++..+..|..+++|+.|++++|++++..
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 86 77666778888888888888888888777888888888888888888888777777888888888888888888777
Q ss_pred ccCCCCCCCcCEEEcCCCccCCCCCCCCCCCCCCCeEecCCCcccccCcccccCCCCCCeeeCCCCCCcc
Q 035998 318 LLNCPALTNLTSLDLGTNKFNGPLPTNLPRCRKLKNINLARNNFSGQIPETYKNFESLSYLSLSNSSIYN 387 (1020)
Q Consensus 318 ~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~i~~ 387 (1020)
+..+..+++|++|+|++|++++..|..+..+++|+.|++++|++++..+..+..+++|++|++++|++..
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 7778888889999999999888888888888999999999999988777778888899999999888754
No 309
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=2.7e-29 Score=277.93 Aligned_cols=165 Identities=18% Similarity=0.200 Sum_probs=99.5
Q ss_pred cccccccccccccccccccccchhhhhhcccccccccccccC-CCCCcccc-------cCCCccEEEccCCcCcccCccc
Q 035998 201 LGNCASLEHLCLGMNDLTGGIADDIFQLQKLRLLGLQDNQLS-GKLSPSIA-------DLSNLVRLDVSSNNFSGNIPDV 272 (1020)
Q Consensus 201 l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~-------~l~~L~~L~Ls~N~l~~~~p~~ 272 (1020)
++..++|++|++++|.+ .+|..+... |+.|+|++|+++ +.+|..+. ++++|++|+|++|++++.+|..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 45566777777777777 566666554 777777777773 34454444 5666666666666666655554
Q ss_pred c--cCCcccceeecccccccccCCCCCcCCcccccccccccccccccccCCCCCCCcCEEEcCCCccCCCCCCCCCCCCC
Q 035998 273 F--AGLGEFQYLVAHSNRFTGRIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNKFNGPLPTNLPRCRK 350 (1020)
Q Consensus 273 ~--~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 350 (1020)
+ ..+++|++|++++|++++. |..++.+.. ..+++|++|+|++|++++..|..|..+++
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~-------------------~~~~~L~~L~L~~N~l~~~~~~~~~~l~~ 174 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQ-------------------WLKPGLKVLSIAQAHSLNFSCEQVRVFPA 174 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHT-------------------TCCTTCCEEEEESCSCCCCCTTTCCCCSS
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHH-------------------hhcCCCcEEEeeCCCCccchHHHhccCCC
Confidence 4 5555555555555555544 333322210 01266777777777777666677777777
Q ss_pred CCeEecCCCccccc--Ccccc--cCCCCCCeeeCCCCCCcchh
Q 035998 351 LKNINLARNNFSGQ--IPETY--KNFESLSYLSLSNSSIYNLS 389 (1020)
Q Consensus 351 L~~L~L~~N~l~~~--~p~~~--~~l~~L~~L~l~~N~i~~l~ 389 (1020)
|++|+|++|++.+. .|..+ ..+++|++|++++|+|+.++
T Consensus 175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 217 (312)
T 1wwl_A 175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS 217 (312)
T ss_dssp CCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHH
T ss_pred CCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchH
Confidence 77777777776654 23333 56666777777776665443
No 310
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=4.2e-28 Score=269.90 Aligned_cols=238 Identities=17% Similarity=0.207 Sum_probs=179.9
Q ss_pred CCCCCeeeccCCCCCCCCCCccCCCCcceeeeccCccCCCCCccccccCCcccEEEccCCCCCCCCCCcccccccccccc
Q 035998 132 LPNLEVLDLSSNDLSGPLPQTINLPSIQVLDISSNSLNGSVPTSICKNSSRIRVINLSVNYFSGTLSPGLGNCASLEHLC 211 (1020)
Q Consensus 132 l~~L~~L~L~~n~l~~~~p~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~ 211 (1020)
.+++++|+|++|.++..++...++++|++|+|++|.++ .+|..+ ..+++|++|+|++|+++ .+|..++++++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~-~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTM-QQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCG-GGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHH-hccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 57889999999999855444447888888888888887 677655 45666777777777666 5566666666666666
Q ss_pred ccccccccccchhhhhhcccccccccccccCCCCCcccccCCCccEEEccCCcCcccCcccccCCcccceeecccccccc
Q 035998 212 LGMNDLTGGIADDIFQLQKLRLLGLQDNQLSGKLSPSIADLSNLVRLDVSSNNFSGNIPDVFAGLGEFQYLVAHSNRFTG 291 (1020)
Q Consensus 212 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 291 (1020)
|++|++.+.+|..+... ..+..+.++++|++|+|++|+++ .+|..++.+++|++|++++|++++
T Consensus 157 L~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~ 220 (328)
T 4fcg_A 157 IRACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA 220 (328)
T ss_dssp EEEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC
T ss_pred CCCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc
Confidence 66666666666544330 11123445777888888888777 667777777788888888888775
Q ss_pred cCCCCCcCCcccccccccccccccccccCCCCCCCcCEEEcCCCccCCCCCCCCCCCCCCCeEecCCCcccccCcccccC
Q 035998 292 RIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNKFNGPLPTNLPRCRKLKNINLARNNFSGQIPETYKN 371 (1020)
Q Consensus 292 ~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~ 371 (1020)
+|..+..+++|++|+|++|.+.+.+|..+..+++|++|+|++|++.+.+|..+..+++|++|+|++|++.+.+|..+++
T Consensus 221 -l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~ 299 (328)
T 4fcg_A 221 -LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299 (328)
T ss_dssp -CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG
T ss_pred -CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhh
Confidence 4556788888888888888888888888888899999999999888899989999999999999999999999999999
Q ss_pred CCCCCeeeCCCCCCcchh
Q 035998 372 FESLSYLSLSNSSIYNLS 389 (1020)
Q Consensus 372 l~~L~~L~l~~N~i~~l~ 389 (1020)
+++|+.+++..|.+..++
T Consensus 300 L~~L~~l~l~~~~~~~l~ 317 (328)
T 4fcg_A 300 LPANCIILVPPHLQAQLD 317 (328)
T ss_dssp SCTTCEEECCGGGSCC--
T ss_pred ccCceEEeCCHHHHHHHh
Confidence 999999999888765544
No 311
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.9e-28 Score=267.66 Aligned_cols=262 Identities=21% Similarity=0.230 Sum_probs=192.4
Q ss_pred CCCCCCCcC---ceEEcCCCCCCCCCCCCCCCceEEEecCCCcccccccccccCCCCCcEEecCCCCCCCCCCccccCCC
Q 035998 57 ASSSDCCHW---VGITCNSSSSLGLNDSIGSGRVTGLFLYKRRLKGKLSESLGNLVQLRFLNLSHNLLKGTVPVSLVNLP 133 (1020)
Q Consensus 57 ~~~~~~C~w---~gv~C~~~~~~~~~~~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 133 (1020)
++..+.|.. ..|.|+..+.+.+|...+ ..++.|+++++.+++..+..++++++|++|+|++|.+++..|..|.+++
T Consensus 2 CP~~C~C~~~~~~~~~c~~~~l~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 80 (285)
T 1ozn_A 2 CPGACVCYNEPKVTTSCPQQGLQAVPVGIP-AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA 80 (285)
T ss_dssp CCTTCEEECSSSCEEECCSSCCSSCCTTCC-TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred cCCCceECCCCCeEEEcCcCCcccCCcCCC-CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCcc
Confidence 344555754 458999888888887654 5788888888888887777888888888888888888877788888888
Q ss_pred CCCeeeccCCC-CCCCCCCcc-CCCCcceeeeccCccCCCCCccccccCCcccEEEccCCCCCCCCCCcccccccccccc
Q 035998 134 NLEVLDLSSND-LSGPLPQTI-NLPSIQVLDISSNSLNGSVPTSICKNSSRIRVINLSVNYFSGTLSPGLGNCASLEHLC 211 (1020)
Q Consensus 134 ~L~~L~L~~n~-l~~~~p~~~-~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~ 211 (1020)
+|++|+|++|. ++...|..+ .+++|++|+|++|++++ ++...+..+++|++|++++|++++..+..|+++++|++|+
T Consensus 81 ~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 159 (285)
T 1ozn_A 81 LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE-LGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF 159 (285)
T ss_dssp TCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCE-ECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEE
Confidence 88888888887 777767776 78888888888888874 4444456778888888888888876666777888888888
Q ss_pred ccccccccccchhhhhhcccccccccccccCCCCCcccccCCCccEEEccCCcCcccCcccccCCcccceeecccccccc
Q 035998 212 LGMNDLTGGIADDIFQLQKLRLLGLQDNQLSGKLSPSIADLSNLVRLDVSSNNFSGNIPDVFAGLGEFQYLVAHSNRFTG 291 (1020)
Q Consensus 212 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 291 (1020)
|++|++++..+..+..+++|++|+|++|++++..|..|..+++|++|++++|++++..+..|..+++|++|++++|.+..
T Consensus 160 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred CCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 88888876666667777788888888888877777777777788888888888877666677777777777777777764
Q ss_pred cCCCCCcCCcccccccccccccccccccCC
Q 035998 292 RIPHSLSNSPTLNLLNLRNNSLDGSLLLNC 321 (1020)
Q Consensus 292 ~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~ 321 (1020)
..+.. .-...++.+..+.+.+....|..+
T Consensus 240 ~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l 268 (285)
T 1ozn_A 240 DCRAR-PLWAWLQKFRGSSSEVPCSLPQRL 268 (285)
T ss_dssp SGGGH-HHHHHHHHCCSEECCCBEEESGGG
T ss_pred CCCcH-HHHHHHHhcccccCccccCCchHh
Confidence 32211 111234444455555554444433
No 312
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.4e-27 Score=278.74 Aligned_cols=248 Identities=22% Similarity=0.255 Sum_probs=169.7
Q ss_pred CcceeeeccCccCCCCCccccccCCcccEEEccCCCCCCCCCCccccccccccccccccccccccchhhhhhcccccccc
Q 035998 157 SIQVLDISSNSLNGSVPTSICKNSSRIRVINLSVNYFSGTLSPGLGNCASLEHLCLGMNDLTGGIADDIFQLQKLRLLGL 236 (1020)
Q Consensus 157 ~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 236 (1020)
....++.+++.++ .+|..+. ++++.|+|++|++++..+..|++++ +|++|+|
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~------------------------~L~~L~L 106 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQMIQADTFRHLH------------------------HLEVLQL 106 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCT------------------------TCCEEEC
T ss_pred CCcEEEECCCCcC-ccCCCCC---CCccEEECcCCcCceECHHHcCCCC------------------------CCCEEEC
Confidence 3456667666666 5555442 3455555555555544444444444 4444445
Q ss_pred cccccCCCCCcccccCCCccEEEccCCcCcccCcccccCCcccceeecccccccccCCCCCcCCcccccccccc-ccccc
Q 035998 237 QDNQLSGKLSPSIADLSNLVRLDVSSNNFSGNIPDVFAGLGEFQYLVAHSNRFTGRIPHSLSNSPTLNLLNLRN-NSLDG 315 (1020)
Q Consensus 237 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~ 315 (1020)
++|+|++..+..|.++++|++|+|++|++++..+..|.++++|++|++++|+++...+..|.++++|+.|++++ |.+..
T Consensus 107 s~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~ 186 (452)
T 3zyi_A 107 GRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY 186 (452)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE
T ss_pred CCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccc
Confidence 55555444445555555555555555555555555555566666666666666655555666666677777766 44444
Q ss_pred ccccCCCCCCCcCEEEcCCCccCCCCCCCCCCCCCCCeEecCCCcccccCcccccCCCCCCeeeCCCCCCcchhhHHHHH
Q 035998 316 SLLLNCPALTNLTSLDLGTNKFNGPLPTNLPRCRKLKNINLARNNFSGQIPETYKNFESLSYLSLSNSSIYNLSSALQVL 395 (1020)
Q Consensus 316 ~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~i~~l~~~~~~l 395 (1020)
..+..|..+++|++|+|++|++++ +| .+..+++|+.|+|++|++++..|..|.++++|+.|++++|+++.
T Consensus 187 i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-------- 256 (452)
T 3zyi_A 187 ISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL-------- 256 (452)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCE--------
T ss_pred cChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCce--------
Confidence 445567778888888888888874 34 47788889999999999888888888888888888888887543
Q ss_pred hhhcccchhhhhccccCCCCCCCccccccCceEEEecccccccccchhhhcCCCCcEEecccccccccccccccCcCcCc
Q 035998 396 QQCRNLTTLVLTLNFRNEKLPTDPRLHFANLKVLVIASCGLRGSIPQWLRGCSKLQLVDLSWNQLSGTIPVWFGGFQDLF 475 (1020)
Q Consensus 396 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 475 (1020)
..|..|.++++|+.|+|++|+|++..+..|..+++|+
T Consensus 257 -------------------------------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 293 (452)
T 3zyi_A 257 -------------------------------------------IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV 293 (452)
T ss_dssp -------------------------------------------ECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCC
T ss_pred -------------------------------------------ECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCC
Confidence 4456678888999999999999977778889999999
Q ss_pred EEeCCCCccc
Q 035998 476 YLDLSNNTFT 485 (1020)
Q Consensus 476 ~L~Ls~N~l~ 485 (1020)
.|+|++|.+.
T Consensus 294 ~L~L~~Np~~ 303 (452)
T 3zyi_A 294 ELHLHHNPWN 303 (452)
T ss_dssp EEECCSSCEE
T ss_pred EEEccCCCcC
Confidence 9999999887
No 313
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=3.3e-30 Score=285.37 Aligned_cols=202 Identities=21% Similarity=0.259 Sum_probs=130.4
Q ss_pred CCcccEEEccCCCCCCCCCCcc--ccccccccccccccccccccchhhhhh-----cccccccccccccCCCCCcccccC
Q 035998 180 SSRIRVINLSVNYFSGTLSPGL--GNCASLEHLCLGMNDLTGGIADDIFQL-----QKLRLLGLQDNQLSGKLSPSIADL 252 (1020)
Q Consensus 180 ~~~L~~L~L~~N~l~~~~~~~l--~~l~~L~~L~L~~N~l~~~~~~~~~~l-----~~L~~L~L~~N~l~~~~~~~~~~l 252 (1020)
+++|++|+|++|++++.+|..+ +.+++|++|+|++|++++. |..+..+ ++|++|+|++|++++..|..|+++
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 3444444444444444444443 5556666666666666654 5556655 666777777777766666667777
Q ss_pred CCccEEEccCCcCccc--Ccccc--cCCcccceeecccccccc---cCCCCCcCCcccccccccccccccccc-cCCCCC
Q 035998 253 SNLVRLDVSSNNFSGN--IPDVF--AGLGEFQYLVAHSNRFTG---RIPHSLSNSPTLNLLNLRNNSLDGSLL-LNCPAL 324 (1020)
Q Consensus 253 ~~L~~L~Ls~N~l~~~--~p~~~--~~l~~L~~L~L~~N~l~~---~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l 324 (1020)
++|++|+|++|++.+. .|..+ ..+++|++|++++|++++ .....+.++++|++|+|++|++++..+ ..+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 7777777777766554 22233 666777777777777662 112233456777777777777776654 345567
Q ss_pred CCcCEEEcCCCccCCCCCCCCCCCCCCCeEecCCCcccccCcccccCCCCCCeeeCCCCCCcc
Q 035998 325 TNLTSLDLGTNKFNGPLPTNLPRCRKLKNINLARNNFSGQIPETYKNFESLSYLSLSNSSIYN 387 (1020)
Q Consensus 325 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~i~~ 387 (1020)
++|++|+|++|+|+ .+|..+. ++|++|+|++|++++. |. +..+++|++|++++|+++.
T Consensus 253 ~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 77888888888887 6666665 7788888888888765 55 7778888888888887754
No 314
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.5e-27 Score=277.46 Aligned_cols=248 Identities=21% Similarity=0.238 Sum_probs=158.7
Q ss_pred CcceeeeccCccCCCCCccccccCCcccEEEccCCCCCCCCCCccccccccccccccccccccccchhhhhhcccccccc
Q 035998 157 SIQVLDISSNSLNGSVPTSICKNSSRIRVINLSVNYFSGTLSPGLGNCASLEHLCLGMNDLTGGIADDIFQLQKLRLLGL 236 (1020)
Q Consensus 157 ~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 236 (1020)
..+.++.+++.++ .+|..+. ++++.|+|++|++++..+..|.++++|++|+|++|++++..+
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~-------------- 105 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEI-------------- 105 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECG--------------
T ss_pred CCCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccCh--------------
Confidence 3456666666666 5665442 345555555555555555555555555555555555554444
Q ss_pred cccccCCCCCcccccCCCccEEEccCCcCcccCcccccCCcccceeecccccccccCCCCCcCCcccccccccc-ccccc
Q 035998 237 QDNQLSGKLSPSIADLSNLVRLDVSSNNFSGNIPDVFAGLGEFQYLVAHSNRFTGRIPHSLSNSPTLNLLNLRN-NSLDG 315 (1020)
Q Consensus 237 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~ 315 (1020)
..|.++++|++|+|++|+|++..+..|..+++|++|++++|+++...+..|.++++|+.|+|++ |.+..
T Consensus 106 ----------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~ 175 (440)
T 3zyj_A 106 ----------GAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY 175 (440)
T ss_dssp ----------GGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE
T ss_pred ----------hhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcce
Confidence 4444455555555555555544444455555555555555555545555555566666666665 33444
Q ss_pred ccccCCCCCCCcCEEEcCCCccCCCCCCCCCCCCCCCeEecCCCcccccCcccccCCCCCCeeeCCCCCCcchhhHHHHH
Q 035998 316 SLLLNCPALTNLTSLDLGTNKFNGPLPTNLPRCRKLKNINLARNNFSGQIPETYKNFESLSYLSLSNSSIYNLSSALQVL 395 (1020)
Q Consensus 316 ~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~i~~l~~~~~~l 395 (1020)
..+..|..+++|++|+|++|+++ .+| .+..+++|++|+|++|++++..|..|.++++|+.|+|++|+|+.
T Consensus 176 i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-------- 245 (440)
T 3zyj_A 176 ISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV-------- 245 (440)
T ss_dssp ECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE--------
T ss_pred eCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeE--------
Confidence 44445667777777777777777 444 36777788888888888887777778888888888887777543
Q ss_pred hhhcccchhhhhccccCCCCCCCccccccCceEEEecccccccccchhhhcCCCCcEEecccccccccccccccCcCcCc
Q 035998 396 QQCRNLTTLVLTLNFRNEKLPTDPRLHFANLKVLVIASCGLRGSIPQWLRGCSKLQLVDLSWNQLSGTIPVWFGGFQDLF 475 (1020)
Q Consensus 396 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 475 (1020)
..|..|.++++|+.|+|++|+|++..+..|..+++|+
T Consensus 246 -------------------------------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 282 (440)
T 3zyj_A 246 -------------------------------------------IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE 282 (440)
T ss_dssp -------------------------------------------ECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCC
T ss_pred -------------------------------------------EChhhhcCCCCCCEEECCCCCCCccChhHhccccCCC
Confidence 3345677788888888888888877777888888999
Q ss_pred EEeCCCCccc
Q 035998 476 YLDLSNNTFT 485 (1020)
Q Consensus 476 ~L~Ls~N~l~ 485 (1020)
.|+|++|.+.
T Consensus 283 ~L~L~~Np~~ 292 (440)
T 3zyj_A 283 RIHLHHNPWN 292 (440)
T ss_dssp EEECCSSCEE
T ss_pred EEEcCCCCcc
Confidence 9999999886
No 315
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=3.7e-29 Score=277.56 Aligned_cols=269 Identities=22% Similarity=0.182 Sum_probs=185.7
Q ss_pred CccEEEccCCcCcccCcccccCCcccceeecccccccccCCCCCcCCcccccccccccccccccccCCCCCCCcCEEEcC
Q 035998 254 NLVRLDVSSNNFSGNIPDVFAGLGEFQYLVAHSNRFTGRIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLG 333 (1020)
Q Consensus 254 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 333 (1020)
+++.++++.+.+...++..+..+++|++|++++|++++..|..|..+++|++|+|++|.+++..+ +..+++|++|+|+
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 34555666666655555555555566666666666665555556666666666666666554443 5555555555555
Q ss_pred CCccCCCCCCCCCCCCCCCeEecCCCcccccCcccccCCCCCCeeeCCCCCCcchhhHHHHHhhhcccchhhhhccccCC
Q 035998 334 TNKFNGPLPTNLPRCRKLKNINLARNNFSGQIPETYKNFESLSYLSLSNSSIYNLSSALQVLQQCRNLTTLVLTLNFRNE 413 (1020)
Q Consensus 334 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~i~~l~~~~~~l~~l~~L~~L~l~~n~~~~ 413 (1020)
+|++++.. ..++|++|++++|++++..+.. ++
T Consensus 89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~---------------------------------------- 120 (317)
T 3o53_A 89 NNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQ---------------------------------------- 120 (317)
T ss_dssp SSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CS----------------------------------------
T ss_pred CCcccccc-----CCCCcCEEECCCCccCCcCccc---cC----------------------------------------
Confidence 55555321 1245555555555554433222 23
Q ss_pred CCCCCccccccCceEEEecccccccccchhhhcCCCCcEEecccccccccccccc-cCcCcCcEEeCCCCcccccCCCCC
Q 035998 414 KLPTDPRLHFANLKVLVIASCGLRGSIPQWLRGCSKLQLVDLSWNQLSGTIPVWF-GGFQDLFYLDLSNNTFTGEIPKNL 492 (1020)
Q Consensus 414 ~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~ 492 (1020)
+|+.|++++|.+.+..|..+..+++|++|+|++|++++..|..+ ..+++|++|+|++|++++. |..
T Consensus 121 -----------~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~- 187 (317)
T 3o53_A 121 -----------GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQ- 187 (317)
T ss_dssp -----------SCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECC-
T ss_pred -----------CCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-ccc-
Confidence 44455555555555556677788889999999999987777766 4788899999999988854 222
Q ss_pred CCCcccccccCcCCCCCCCcccceeecccccccccccccCCCCeeecccCccccCCCccccCCCcceEEEecCCcceecc
Q 035998 493 TGLPSLITRNISLEEPSPDFPFFMRRNVSARGLQYNQIWSFPPTIDLSLNRLDGSIWPEFGNLKKLHVFDLKHNNLSGPI 572 (1020)
Q Consensus 493 ~~l~~L~~l~~s~~~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~l~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~~ 572 (1020)
..+++| +.|+|++|+|++. |+.|..+++|+.|+|++|+|+ .+
T Consensus 188 ~~l~~L------------------------------------~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l 229 (317)
T 3o53_A 188 VVFAKL------------------------------------KTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LI 229 (317)
T ss_dssp CCCTTC------------------------------------CEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EE
T ss_pred cccccC------------------------------------CEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-ch
Confidence 224444 4678888888864 455999999999999999998 58
Q ss_pred CccccCCCcccEEEccCCccc-ccCCccccccccccccccc-cccccccCCCC
Q 035998 573 PSELTGMTSLETLDLSYNNLS-GAIPISLEKLSFLSKFSVA-NNHLTGRIPSG 623 (1020)
Q Consensus 573 p~~~~~l~~L~~L~Ls~N~l~-g~ip~~l~~l~~L~~l~ls-~N~l~g~~p~~ 623 (1020)
|..+..+++|+.|+|++|+++ +.+|..+..++.|+.|+++ .+.++|..|..
T Consensus 230 ~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp CTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred hhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhc
Confidence 999999999999999999999 8899999999999999999 66788877753
No 316
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=2.6e-29 Score=278.76 Aligned_cols=268 Identities=19% Similarity=0.208 Sum_probs=189.3
Q ss_pred cccccccccccccccchhhhhhcccccccccccccCCCCCcccccCCCccEEEccCCcCcccCcccccCCcccceeeccc
Q 035998 207 LEHLCLGMNDLTGGIADDIFQLQKLRLLGLQDNQLSGKLSPSIADLSNLVRLDVSSNNFSGNIPDVFAGLGEFQYLVAHS 286 (1020)
Q Consensus 207 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 286 (1020)
++..+++.+.+.......+..+++|++|+|++|++++..|..|..+++|++|+|++|++++..+ |..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 4445566666654445555566678888888888877666778888888888888888876554 77777778888887
Q ss_pred ccccccCCCCCcCCcccccccccccccccccccCCCCCCCcCEEEcCCCccCCCCCCCCCCCCCCCeEecCCCcccccCc
Q 035998 287 NRFTGRIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNKFNGPLPTNLPRCRKLKNINLARNNFSGQIP 366 (1020)
Q Consensus 287 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 366 (1020)
|++++.. ..++|+.|++++|++++..+.. +++|++|++++|++++..+..+..+++|++|+|++|++++..+
T Consensus 90 n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 90 NYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp SEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred Ccccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence 7777543 2367777777777777665543 4667778888888777667677777777777777777777666
Q ss_pred cccc-CCCCCCeeeCCCCCCcchhhHHHHHhhhcccchhhhhccccCCCCCCCccccccCceEEEecccccccccchhhh
Q 035998 367 ETYK-NFESLSYLSLSNSSIYNLSSALQVLQQCRNLTTLVLTLNFRNEKLPTDPRLHFANLKVLVIASCGLRGSIPQWLR 445 (1020)
Q Consensus 367 ~~~~-~l~~L~~L~l~~N~i~~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~ 445 (1020)
..+. .+++|++|++++|.|+.++. ..
T Consensus 162 ~~~~~~l~~L~~L~L~~N~l~~~~~-----------------------------------------------------~~ 188 (317)
T 3o53_A 162 AELAASSDTLEHLNLQYNFIYDVKG-----------------------------------------------------QV 188 (317)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEEEC-----------------------------------------------------CC
T ss_pred HHHhhccCcCCEEECCCCcCccccc-----------------------------------------------------cc
Confidence 6553 56777777777777554321 12
Q ss_pred cCCCCcEEecccccccccccccccCcCcCcEEeCCCCcccccCCCCCCCCcccccccCcCCCCCCCcccceeeccccccc
Q 035998 446 GCSKLQLVDLSWNQLSGTIPVWFGGFQDLFYLDLSNNTFTGEIPKNLTGLPSLITRNISLEEPSPDFPFFMRRNVSARGL 525 (1020)
Q Consensus 446 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~s~~~~~~~~~~~~~~~~~~~~l 525 (1020)
.+++|++|+|++|+|++ +|..|..+++|++|+|++|+++ .+|.
T Consensus 189 ~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~----------------------------------- 231 (317)
T 3o53_A 189 VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEK----------------------------------- 231 (317)
T ss_dssp CCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECT-----------------------------------
T ss_pred ccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhh-----------------------------------
Confidence 35677788888888874 4445777778888888887776 2333
Q ss_pred ccccccCCCCeeecccCccccCCCccccCCCcceEEEecCCcce-eccCccccCCCcccEEEcc-CCcccccCCcc
Q 035998 526 QYNQIWSFPPTIDLSLNRLDGSIWPEFGNLKKLHVFDLKHNNLS-GPIPSELTGMTSLETLDLS-YNNLSGAIPIS 599 (1020)
Q Consensus 526 ~~n~~~~~~~~l~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls-~N~l~g~ip~~ 599 (1020)
.+..+++|+.|+|++|.++ +.+|..++.+++|+.|+++ .+.++|..|..
T Consensus 232 -------------------------~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 232 -------------------------ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp -------------------------TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred -------------------------HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhc
Confidence 3455667888888888888 6788888888899999888 45677766644
No 317
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1.5e-30 Score=315.86 Aligned_cols=401 Identities=16% Similarity=0.165 Sum_probs=253.2
Q ss_pred CCCCcceeeeccCcc---CCCCCcccc-----------ccCCcccEEEccCCCCCCCCCCccccc--cccccccccccc-
Q 035998 154 NLPSIQVLDISSNSL---NGSVPTSIC-----------KNSSRIRVINLSVNYFSGTLSPGLGNC--ASLEHLCLGMND- 216 (1020)
Q Consensus 154 ~l~~L~~L~Ls~N~l---~~~ip~~~~-----------~~~~~L~~L~L~~N~l~~~~~~~l~~l--~~L~~L~L~~N~- 216 (1020)
.+++|++|+|+++.. .+.+|..+. ..+++|++|+|++|.+++..+..++.. .+|++|+|++|.
T Consensus 71 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~ 150 (592)
T 3ogk_B 71 RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG 150 (592)
T ss_dssp HCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE
T ss_pred hCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC
Confidence 688999999988642 123443221 256677777777777766555555543 347777777765
Q ss_pred ccc-ccchhhhhhcccccccccccccCCC----CCcccccCCCccEEEccCCcCcc----cCcccccCCcccceeecccc
Q 035998 217 LTG-GIADDIFQLQKLRLLGLQDNQLSGK----LSPSIADLSNLVRLDVSSNNFSG----NIPDVFAGLGEFQYLVAHSN 287 (1020)
Q Consensus 217 l~~-~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~N 287 (1020)
++. .++.....+++|++|+|++|.+++. ++..+..+++|++|++++|.+++ .++..+.++++|+.|++++|
T Consensus 151 ~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 230 (592)
T 3ogk_B 151 FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF 230 (592)
T ss_dssp EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC
T ss_pred cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc
Confidence 221 1222233567777777777776654 23344556777777777777762 33444556667777777777
Q ss_pred cccccCCCCCcCCcccccccccccccc---cccccCCCCCCCcCEEEcCCCccCCCCCCCCCCCCCCCeEecCCCccccc
Q 035998 288 RFTGRIPHSLSNSPTLNLLNLRNNSLD---GSLLLNCPALTNLTSLDLGTNKFNGPLPTNLPRCRKLKNINLARNNFSGQ 364 (1020)
Q Consensus 288 ~l~~~~p~~~~~l~~L~~L~L~~N~l~---~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 364 (1020)
.+.+ +|..+.++++|+.|+++++... ...+..+..+++|+.|+++++... .+|..+..+++|++|+|++|.+++.
T Consensus 231 ~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~ 308 (592)
T 3ogk_B 231 EILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETE 308 (592)
T ss_dssp BGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHH
T ss_pred cHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHH
Confidence 7665 4456666677777777653222 222334555666666666665332 4555556666666666666665543
Q ss_pred Cc-ccccCCCCCCeeeCCCCCCcchhhHHHHHhhhcccchhhhhccccCCCCCCCccccccCceEEEecc----------
Q 035998 365 IP-ETYKNFESLSYLSLSNSSIYNLSSALQVLQQCRNLTTLVLTLNFRNEKLPTDPRLHFANLKVLVIAS---------- 433 (1020)
Q Consensus 365 ~p-~~~~~l~~L~~L~l~~N~i~~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~---------- 433 (1020)
.. ..+..+++|++|+++ |.+.. ..+..+ ...+++|+.|++.+
T Consensus 309 ~~~~~~~~~~~L~~L~L~-~~~~~--~~l~~~------------------------~~~~~~L~~L~L~~g~~~~~~~~~ 361 (592)
T 3ogk_B 309 DHCTLIQKCPNLEVLETR-NVIGD--RGLEVL------------------------AQYCKQLKRLRIERGADEQGMEDE 361 (592)
T ss_dssp HHHHHHTTCTTCCEEEEE-GGGHH--HHHHHH------------------------HHHCTTCCEEEEECCCCSSTTSST
T ss_pred HHHHHHHhCcCCCEEecc-CccCH--HHHHHH------------------------HHhCCCCCEEEeecCccccccccc
Confidence 33 234566666666666 32221 111111 11345566666662
Q ss_pred -cccccc-cchhhhcCCCCcEEecccccccccccccccC-cCcCcEEeCC----CCccccc-----CCCCCCCCcccccc
Q 035998 434 -CGLRGS-IPQWLRGCSKLQLVDLSWNQLSGTIPVWFGG-FQDLFYLDLS----NNTFTGE-----IPKNLTGLPSLITR 501 (1020)
Q Consensus 434 -n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls----~N~l~~~-----~p~~~~~l~~L~~l 501 (1020)
+.+++. ++....++++|++|+++.|++++..+..+.. +++|+.|+|+ .|.+++. ++..+.++++|+
T Consensus 362 ~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~-- 439 (592)
T 3ogk_B 362 EGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLR-- 439 (592)
T ss_dssp TCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCC--
T ss_pred cCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCC--
Confidence 344433 3334567899999999999999887777766 8899999996 6777753 222244445443
Q ss_pred cCcCCCCCCCcccceeecccccccccccccCCCCeeeccc--CccccCCCccccC-CCcceEEEecCCccee-ccCcccc
Q 035998 502 NISLEEPSPDFPFFMRRNVSARGLQYNQIWSFPPTIDLSL--NRLDGSIWPEFGN-LKKLHVFDLKHNNLSG-PIPSELT 577 (1020)
Q Consensus 502 ~~s~~~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~l~Ls~--N~l~~~~~~~~~~-L~~L~~L~Ls~N~l~~-~~p~~~~ 577 (1020)
.|++++ +.+++..+..++. +++|+.|+|++|++++ .++..+.
T Consensus 440 ----------------------------------~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 485 (592)
T 3ogk_B 440 ----------------------------------RFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSR 485 (592)
T ss_dssp ----------------------------------EEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHT
T ss_pred ----------------------------------EEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHh
Confidence 455543 2355554555543 8899999999999986 4566678
Q ss_pred CCCcccEEEccCCccccc-CCcccccccccccccccccccccc
Q 035998 578 GMTSLETLDLSYNNLSGA-IPISLEKLSFLSKFSVANNHLTGR 619 (1020)
Q Consensus 578 ~l~~L~~L~Ls~N~l~g~-ip~~l~~l~~L~~l~ls~N~l~g~ 619 (1020)
.+++|++|+|++|++++. ++..+..+++|+.|++++|++++.
T Consensus 486 ~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 486 GCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp CCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred cCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 899999999999999865 455567899999999999998763
No 318
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=9.5e-27 Score=278.43 Aligned_cols=137 Identities=21% Similarity=0.294 Sum_probs=100.2
Q ss_pred cccccccccccccCCCCCcccccCCCccEEEccCCcCcccCcccccCCcccceeecccccccccCCCCCcCCcccccccc
Q 035998 229 QKLRLLGLQDNQLSGKLSPSIADLSNLVRLDVSSNNFSGNIPDVFAGLGEFQYLVAHSNRFTGRIPHSLSNSPTLNLLNL 308 (1020)
Q Consensus 229 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 308 (1020)
.+++.|++++|.++ .+|..+. ++|++|+|++|+|++ +|. .+++|++|++++|+|++ +|. .+++|++|+|
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEEC
Confidence 46889999999998 6676665 789999999999984 444 46788888888888885 443 5677888888
Q ss_pred cccccccccccCCCCCCCcCEEEcCCCccCCCCCCCCCCCCCCCeEecCCCcccccCcccccCCCCCCeeeCCCCCCcch
Q 035998 309 RNNSLDGSLLLNCPALTNLTSLDLGTNKFNGPLPTNLPRCRKLKNINLARNNFSGQIPETYKNFESLSYLSLSNSSIYNL 388 (1020)
Q Consensus 309 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~i~~l 388 (1020)
++|.+++... .+++|+.|++++|+|++ +|.. +++|++|+|++|++++ +|. .+.+|+.|++++|.|+.+
T Consensus 109 s~N~l~~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l 176 (622)
T 3g06_A 109 FSNPLTHLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTSL 176 (622)
T ss_dssp CSCCCCCCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCC
T ss_pred cCCcCCCCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCCC
Confidence 8888876443 45778888888888874 5543 3678888888888774 343 345677777777776544
No 319
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=2.4e-27 Score=278.37 Aligned_cols=236 Identities=22% Similarity=0.188 Sum_probs=170.3
Q ss_pred CcccccccccccccccccccCCCCCCCcCEEEcCCCccCCCCCCCCCCCCCCCeEecCCCcccccCcccccCCCCCCeee
Q 035998 300 SPTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNKFNGPLPTNLPRCRKLKNINLARNNFSGQIPETYKNFESLSYLS 379 (1020)
Q Consensus 300 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 379 (1020)
+++|+.|+|++|.+++..|..|..+++|++|+|++|.+++.+| +..+++|++|+|++|.+++..+ .++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence 3455555555555555555555556666666666666654444 5566666666666666654322 25666666
Q ss_pred CCCCCCcchhhHHHHHhhhcccchhhhhccccCCCCCCCccccccCceEEEecccccccccchhhhcCCCCcEEeccccc
Q 035998 380 LSNSSIYNLSSALQVLQQCRNLTTLVLTLNFRNEKLPTDPRLHFANLKVLVIASCGLRGSIPQWLRGCSKLQLVDLSWNQ 459 (1020)
Q Consensus 380 l~~N~i~~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 459 (1020)
+++|.|+.++. ..+++|+.|++++|.+++..|..++.+++|+.|+|++|+
T Consensus 106 L~~N~l~~~~~------------------------------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 155 (487)
T 3oja_A 106 AANNNISRVSC------------------------------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155 (487)
T ss_dssp CCSSCCCCEEE------------------------------CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC
T ss_pred CcCCcCCCCCc------------------------------cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC
Confidence 66666554432 123566777777777777778888889999999999999
Q ss_pred cccccccccc-CcCcCcEEeCCCCcccccCCCCCCCCcccccccCcCCCCCCCcccceeecccccccccccccCCCCeee
Q 035998 460 LSGTIPVWFG-GFQDLFYLDLSNNTFTGEIPKNLTGLPSLITRNISLEEPSPDFPFFMRRNVSARGLQYNQIWSFPPTID 538 (1020)
Q Consensus 460 l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~s~~~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~l~ 538 (1020)
|++.+|..|. .+++|++|+|++|.+++..+. ..+++| ..|+
T Consensus 156 l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~--~~l~~L------------------------------------~~L~ 197 (487)
T 3oja_A 156 IDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ--VVFAKL------------------------------------KTLD 197 (487)
T ss_dssp CCEEEGGGGGGGTTTCCEEECTTSCCCEEECC--CCCTTC------------------------------------CEEE
T ss_pred CCCcChHHHhhhCCcccEEecCCCcccccccc--ccCCCC------------------------------------CEEE
Confidence 9988888886 789999999999999866332 234444 3678
Q ss_pred cccCccccCCCccccCCCcceEEEecCCcceeccCccccCCCcccEEEccCCccc-ccCCccccccccccccccc
Q 035998 539 LSLNRLDGSIWPEFGNLKKLHVFDLKHNNLSGPIPSELTGMTSLETLDLSYNNLS-GAIPISLEKLSFLSKFSVA 612 (1020)
Q Consensus 539 Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-g~ip~~l~~l~~L~~l~ls 612 (1020)
|++|+|++. |+.|+.+++|+.|+|++|+|++ +|..++.+++|+.|+|++|.++ +.+|..+..++.|+.++++
T Consensus 198 Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 198 LSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 888888874 4458889999999999999985 7888999999999999999998 7888888888888888886
No 320
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=2.6e-26 Score=248.39 Aligned_cols=217 Identities=19% Similarity=0.272 Sum_probs=167.2
Q ss_pred CCCCcCceEEcCCCCCCCCCCCCCCCceEEEecCCCcccccccccccCCCCCcEEecCCCCCCCCCCccccCCCCCCeee
Q 035998 60 SDCCHWVGITCNSSSSLGLNDSIGSGRVTGLFLYKRRLKGKLSESLGNLVQLRFLNLSHNLLKGTVPVSLVNLPNLEVLD 139 (1020)
Q Consensus 60 ~~~C~w~gv~C~~~~~~~~~~~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 139 (1020)
.|+|.|.|+.|+-. +.++.+++++++++. +|..+. ++|++|+|++|++++..+..|.++++|++|+
T Consensus 2 ~~~C~~~~~~C~c~-----------~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 67 (270)
T 2o6q_A 2 EALCKKDGGVCSCN-----------NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLY 67 (270)
T ss_dssp CCCBGGGTCSBEEE-----------TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEE
T ss_pred CccCCCCCCCCEeC-----------CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEE
Confidence 48999999999642 346678899998884 676555 6899999999999976667899999999999
Q ss_pred ccCCCCCCCCCCcc-CCCCcceeeeccCccCCCCCccccccCCcccEEEccCCCCCCCCCCccccccccccccccccccc
Q 035998 140 LSSNDLSGPLPQTI-NLPSIQVLDISSNSLNGSVPTSICKNSSRIRVINLSVNYFSGTLSPGLGNCASLEHLCLGMNDLT 218 (1020)
Q Consensus 140 L~~n~l~~~~p~~~-~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~ 218 (1020)
|++|+++..++..+ ++++|++|+|++|+++ .+|...+..+++|++|+|++|++++..+..|+++++|++|+|++|+++
T Consensus 68 l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 146 (270)
T 2o6q_A 68 LNDNKLQTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ 146 (270)
T ss_dssp CCSSCCSCCCTTTTSSCTTCCEEECCSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCccCeeChhhhcCCCCCCEEECCCCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC
Confidence 99999988777776 6888999999988887 666666677788888888888888777777777777777777777777
Q ss_pred cccchhhhhhcccccccccccccCCCCCcccccCCCccEEEccCCcCcccCcccccCCcccceeecccccccc
Q 035998 219 GGIADDIFQLQKLRLLGLQDNQLSGKLSPSIADLSNLVRLDVSSNNFSGNIPDVFAGLGEFQYLVAHSNRFTG 291 (1020)
Q Consensus 219 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 291 (1020)
+..+..|..+++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|+.|++++|.+..
T Consensus 147 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 147 SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 6655566777777777777777776666667777777777777777776666666667777777777776653
No 321
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=99.93 E-value=1.8e-27 Score=283.08 Aligned_cols=184 Identities=18% Similarity=0.125 Sum_probs=130.2
Q ss_pred eeccCCeEEEEEE-eCCCCEEEEEEecCCc----------hhhHHHHHHHHHHHHHc-CCCccceEeeEEeccCceEEEE
Q 035998 750 IGCGGFGLVYRAT-LPDGRNVAIKRLSGDC----------GQMEREFRAEVEALSRA-QHPNLVHLQGYCMHKNDRLLIY 817 (1020)
Q Consensus 750 lg~G~~g~V~~~~-~~~~~~vavK~~~~~~----------~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ 817 (1020)
.+.|+.|.+..++ .-.|+.||||++..+. ....+++.+|+++|+++ .|+||+++++++.++...||||
T Consensus 242 ~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLVM 321 (569)
T 4azs_A 242 PYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLVM 321 (569)
T ss_dssp -C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEEE
T ss_pred cccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEEE
Confidence 4566666665554 2358889999997652 12235699999999999 7999999999999999999999
Q ss_pred EeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccC
Q 035998 818 SFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILS 897 (1020)
Q Consensus 818 e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~ 897 (1020)
||++|++|.+++.+. ..++.. +|+.||+.||+|+|++ |||||||||+|||++.+|.+||+|||+|+....
T Consensus 322 Eyv~G~~L~d~i~~~----~~l~~~---~I~~QIl~AL~ylH~~---GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~ 391 (569)
T 4azs_A 322 EKLPGRLLSDMLAAG----EEIDRE---KILGSLLRSLAALEKQ---GFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQ 391 (569)
T ss_dssp ECCCSEEHHHHHHTT----CCCCHH---HHHHHHHHHHHHHHHT---TCEESCCCGGGEEECTTSCEEECCCTTEESCC-
T ss_pred ecCCCCcHHHHHHhC----CCCCHH---HHHHHHHHHHHHHHHC---CceeccCchHhEEECCCCCEEEeecccCeeCCC
Confidence 999999999999864 345553 5899999999999999 999999999999999999999999999987643
Q ss_pred CCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCC
Q 035998 898 PYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRP 946 (1020)
Q Consensus 898 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~p 946 (1020)
.. ......+||+.|||||++.+. +..++|+||+|++++++.++..+
T Consensus 392 ~~--~~~~t~vGTp~YmAPE~l~g~-~~~~~d~~s~g~~~~~l~~~~~~ 437 (569)
T 4azs_A 392 DC--SWPTNLVQSFFVFVNELFAEN-KSWNGFWRSAPVHPFNLPQPWSN 437 (569)
T ss_dssp ----CCSHHHHHHHHHHHHHHC------------------CCCCTTHHH
T ss_pred CC--ccccCceechhhccHHHhCCC-CCCcccccccccchhhhccccch
Confidence 22 233456899999999998764 56789999999998887665444
No 322
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=9.3e-27 Score=273.28 Aligned_cols=235 Identities=20% Similarity=0.206 Sum_probs=187.3
Q ss_pred hcccccccccccccCCCCCcccccCCCccEEEccCCcCcccCcccccCCcccceeecccccccccCCCCCcCCccccccc
Q 035998 228 LQKLRLLGLQDNQLSGKLSPSIADLSNLVRLDVSSNNFSGNIPDVFAGLGEFQYLVAHSNRFTGRIPHSLSNSPTLNLLN 307 (1020)
Q Consensus 228 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 307 (1020)
+++|++|+|++|++++..|..|..+++|++|+|++|.+++.+| |..+++|++|++++|+|++..+ .++|+.|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence 3477788888888877777778888888888888888876655 7778888888888888876543 27788888
Q ss_pred ccccccccccccCCCCCCCcCEEEcCCCccCCCCCCCCCCCCCCCeEecCCCcccccCccccc-CCCCCCeeeCCCCCCc
Q 035998 308 LRNNSLDGSLLLNCPALTNLTSLDLGTNKFNGPLPTNLPRCRKLKNINLARNNFSGQIPETYK-NFESLSYLSLSNSSIY 386 (1020)
Q Consensus 308 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~l~~N~i~ 386 (1020)
+++|.+++..+.. +++|++|+|++|++++..|..+..+++|+.|+|++|.+++.+|..+. .+++|++|+|++|.|+
T Consensus 106 L~~N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 106 AANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CCSSCCCCEEECC---CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CcCCcCCCCCccc---cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 8888888766643 47788888888888888888888888888888888888888887776 7888888888888877
Q ss_pred chhhHHHHHhhhcccchhhhhccccCCCCCCCccccccCceEEEecccccccccchhhhcCCCCcEEecccccccccccc
Q 035998 387 NLSSALQVLQQCRNLTTLVLTLNFRNEKLPTDPRLHFANLKVLVIASCGLRGSIPQWLRGCSKLQLVDLSWNQLSGTIPV 466 (1020)
Q Consensus 387 ~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 466 (1020)
.++.. ..+++|+.|++++|.+++..| .+..+++|+.|+|++|+|+ .+|.
T Consensus 183 ~~~~~-----------------------------~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~-~lp~ 231 (487)
T 3oja_A 183 DVKGQ-----------------------------VVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEK 231 (487)
T ss_dssp EEECC-----------------------------CCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECT
T ss_pred ccccc-----------------------------ccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCc-ccch
Confidence 65421 135678888888888887554 4889999999999999999 5888
Q ss_pred cccCcCcCcEEeCCCCccc-ccCCCCCCCCcccccccC
Q 035998 467 WFGGFQDLFYLDLSNNTFT-GEIPKNLTGLPSLITRNI 503 (1020)
Q Consensus 467 ~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~l~~ 503 (1020)
++..+++|+.|+|++|.++ +.+|..+..++.|..+++
T Consensus 232 ~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp TCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred hhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence 8999999999999999998 777888888887765443
No 323
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=4.2e-25 Score=239.88 Aligned_cols=223 Identities=20% Similarity=0.200 Sum_probs=178.3
Q ss_pred ceEEcCCCCCCCCCCCCCCCceEEEecCCCcccccccccccCCCCCcEEecCCCCCCCCCCccccCCCCCCeeeccCCCC
Q 035998 66 VGITCNSSSSLGLNDSIGSGRVTGLFLYKRRLKGKLSESLGNLVQLRFLNLSHNLLKGTVPVSLVNLPNLEVLDLSSNDL 145 (1020)
Q Consensus 66 ~gv~C~~~~~~~~~~~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 145 (1020)
..|.|.+...+.+|...+ ..++.|++++|.+++..+..++++++|++|+|++|++++..+..|.++++|++|+|++|++
T Consensus 10 ~~~~c~~~~l~~ip~~l~-~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 10 ITYQCMELNFYKIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp TEEECTTSCCSSCCSSSC-TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred ceEEecCCCccccCCCCC-CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 369999988888888775 5789999999999987777899999999999999999876777899999999999999999
Q ss_pred CCCCCCcc-CCCCcceeeeccCccCCCCCccccccCCcccEEEccCCCCCCC-CCCccccccccccccccccccccccch
Q 035998 146 SGPLPQTI-NLPSIQVLDISSNSLNGSVPTSICKNSSRIRVINLSVNYFSGT-LSPGLGNCASLEHLCLGMNDLTGGIAD 223 (1020)
Q Consensus 146 ~~~~p~~~-~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~-~~~~l~~l~~L~~L~L~~N~l~~~~~~ 223 (1020)
++..+..+ ++++|++|++++|+++ .++...+..+++|++|++++|.+++. +|..|+++++|++|+|++|++++..+.
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred CccChhhhcCCccccEEECCCCCcc-ccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence 98887777 7899999999999888 44444456788888888888888764 578888888888888888888877777
Q ss_pred hhhhhcccc----cccccccccCCCCCcccccCCCccEEEccCCcCcccCcccccCCcccceeecccccccc
Q 035998 224 DIFQLQKLR----LLGLQDNQLSGKLSPSIADLSNLVRLDVSSNNFSGNIPDVFAGLGEFQYLVAHSNRFTG 291 (1020)
Q Consensus 224 ~~~~l~~L~----~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 291 (1020)
.+..+++|+ .|++++|++++..+..+. ..+|++|+|++|++++..+..|..+++|+.|++++|.+++
T Consensus 168 ~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp GGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred HhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 787777777 677777777755444443 3467777777777776666667777777777777777764
No 324
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=3.1e-28 Score=295.47 Aligned_cols=235 Identities=15% Similarity=0.160 Sum_probs=113.7
Q ss_pred cccCCCCCCeeeccCCCCCC---CCCCc------------c-CCCCcceeeeccCccCCCCCccccccCCcccEEEccCC
Q 035998 128 SLVNLPNLEVLDLSSNDLSG---PLPQT------------I-NLPSIQVLDISSNSLNGSVPTSICKNSSRIRVINLSVN 191 (1020)
Q Consensus 128 ~l~~l~~L~~L~L~~n~l~~---~~p~~------------~-~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N 191 (1020)
.+.++++|++|+|+++.... ..|.. . .+++|++|+|++|.+++..+..+...+++|+.|+|++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 46678899999999875321 11111 1 35677777777776665544444434556666666665
Q ss_pred -CCCCC-CCCccccccccccccccccccccccchhhh----hhcccccccccccccCCCCCccc----ccCCCccEEEcc
Q 035998 192 -YFSGT-LSPGLGNCASLEHLCLGMNDLTGGIADDIF----QLQKLRLLGLQDNQLSGKLSPSI----ADLSNLVRLDVS 261 (1020)
Q Consensus 192 -~l~~~-~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~----~~l~~L~~L~Ls 261 (1020)
.++.. ++..+.++++|++|+|++|.+++..+..+. .+++|+.|++++|. .......+ ..+++|++|+++
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~ 219 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLN 219 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECC
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecC
Confidence 33321 222233455566666666555544333333 23355555555554 11111111 223555555555
Q ss_pred CC-cCcccCcccccCCcccceeecccccccccCCCCCcCCcccccccccccccccccccCCCCCCCcCEE-EcCCCccCC
Q 035998 262 SN-NFSGNIPDVFAGLGEFQYLVAHSNRFTGRIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLTSL-DLGTNKFNG 339 (1020)
Q Consensus 262 ~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L-~L~~N~l~~ 339 (1020)
+| .+++ +|..+..+++|+.|+++.+.. +++.|.+.+.. ..+.++++|+.| .+.+... +
T Consensus 220 ~~~~~~~-l~~~~~~~~~L~~L~l~~~~~-----------------~~~~~~~~~l~-~~l~~~~~L~~Ls~~~~~~~-~ 279 (594)
T 2p1m_B 220 RAVPLEK-LATLLQRAPQLEELGTGGYTA-----------------EVRPDVYSGLS-VALSGCKELRCLSGFWDAVP-A 279 (594)
T ss_dssp TTSCHHH-HHHHHHHCTTCSEEECSBCCC-----------------CCCHHHHHHHH-HHHHTCTTCCEEECCBTCCG-G
T ss_pred CCCcHHH-HHHHHhcCCcceEcccccccC-----------------ccchhhHHHHH-HHHhcCCCcccccCCcccch-h
Confidence 55 2222 444444555555554322210 02233333322 234455555555 2332222 1
Q ss_pred CCCCCCCCCCCCCeEecCCCcccccCcc-cccCCCCCCeeeCCCC
Q 035998 340 PLPTNLPRCRKLKNINLARNNFSGQIPE-TYKNFESLSYLSLSNS 383 (1020)
Q Consensus 340 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~l~~N 383 (1020)
.++..+..+++|++|+|++|.+++.... .+..+++|++|++++|
T Consensus 280 ~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 280 YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp GGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred hHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 2333333456666666666665543222 2445666666666655
No 325
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=1.3e-24 Score=236.03 Aligned_cols=211 Identities=23% Similarity=0.235 Sum_probs=115.2
Q ss_pred CCCcEEecCCCCCCCCCCccccCCCCCCeeeccCCCCCCCCCCcc-CCCCcceeeeccCccCCCCCccccccCCcccEEE
Q 035998 109 VQLRFLNLSHNLLKGTVPVSLVNLPNLEVLDLSSNDLSGPLPQTI-NLPSIQVLDISSNSLNGSVPTSICKNSSRIRVIN 187 (1020)
Q Consensus 109 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~ 187 (1020)
++|++|+|++|++++..+..|.++++|++|+|++|++++..+..+ ++++|++|+|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l------------------- 88 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI------------------- 88 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC-------------------
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc-------------------
Confidence 345556666555554444455555555555555555554444333 344444444444443
Q ss_pred ccCCCCCCCCCCccccccccccccccccccccccchhhhhhcccccccccccccCCC-CCcccccCCCccEEEccCCcCc
Q 035998 188 LSVNYFSGTLSPGLGNCASLEHLCLGMNDLTGGIADDIFQLQKLRLLGLQDNQLSGK-LSPSIADLSNLVRLDVSSNNFS 266 (1020)
Q Consensus 188 L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~ 266 (1020)
++..+..|.++++|++|++++|++++..+..+..+++|++|++++|++++. +|..+.++++|++|++++|+++
T Consensus 89 ------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 89 ------QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp ------CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred ------CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence 333334444555555555555555544343444455555555555555432 3555555566666666666655
Q ss_pred ccCcccccCCcccceeecccccccccCCCCCcCCcccccccccccccccccccCCCCCCCcCEEEcCCCccCCCCCCCCC
Q 035998 267 GNIPDVFAGLGEFQYLVAHSNRFTGRIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNKFNGPLPTNLP 346 (1020)
Q Consensus 267 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 346 (1020)
+..+..|..+.+|+.+.+ .|++++|.+++..+..+.. .+|++|+|++|++++..+..|.
T Consensus 163 ~~~~~~~~~l~~L~~l~l--------------------~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~ 221 (276)
T 2z62_A 163 SIYCTDLRVLHQMPLLNL--------------------SLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFD 221 (276)
T ss_dssp EECGGGGHHHHTCTTCCE--------------------EEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTT
T ss_pred cCCHHHhhhhhhccccce--------------------eeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhc
Confidence 555444444444431110 4556666665544444433 3677777777777766666677
Q ss_pred CCCCCCeEecCCCcccccC
Q 035998 347 RCRKLKNINLARNNFSGQI 365 (1020)
Q Consensus 347 ~l~~L~~L~L~~N~l~~~~ 365 (1020)
.+++|+.|+|++|++++..
T Consensus 222 ~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 222 RLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp TCCSCCEEECCSSCBCCCT
T ss_pred ccccccEEEccCCcccccC
Confidence 7888888888888877543
No 326
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=1.6e-24 Score=234.57 Aligned_cols=231 Identities=18% Similarity=0.179 Sum_probs=175.7
Q ss_pred ccccccccccccccccccchhhhhhcccccccccccccCCCCCcccccCCCccEEEccCCcCcccCcccccCCcccceee
Q 035998 204 CASLEHLCLGMNDLTGGIADDIFQLQKLRLLGLQDNQLSGKLSPSIADLSNLVRLDVSSNNFSGNIPDVFAGLGEFQYLV 283 (1020)
Q Consensus 204 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 283 (1020)
+..+..+++..+.+... .....+++|+.|++++|.++. + ..+..+++|++|++++|.+++. ..+..+++|++|+
T Consensus 18 ~~~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 91 (272)
T 3rfs_A 18 FAETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLI 91 (272)
T ss_dssp HHHHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEE
T ss_pred HHHHHHHHhcCcccccc--cccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEE
Confidence 45666777777777643 335677888888888888773 2 3577788888888888888753 3677788888888
Q ss_pred cccccccccCCCCCcCCcccccccccccccccccccCCCCCCCcCEEEcCCCccCCCCCCCCCCCCCCCeEecCCCcccc
Q 035998 284 AHSNRFTGRIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNKFNGPLPTNLPRCRKLKNINLARNNFSG 363 (1020)
Q Consensus 284 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 363 (1020)
+++|++++..+..|.++++|++|++++|++++..+..+..+++|++|+|++|++++..+..+..+++|+.|++++|++++
T Consensus 92 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 171 (272)
T 3rfs_A 92 LTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS 171 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc
Confidence 88888887777777888888888888888887777777778888888888888887767777788888888888888887
Q ss_pred cCcccccCCCCCCeeeCCCCCCcchhhHHHHHhhhcccchhhhhccccCCCCCCCccccccCceEEEecccccccccchh
Q 035998 364 QIPETYKNFESLSYLSLSNSSIYNLSSALQVLQQCRNLTTLVLTLNFRNEKLPTDPRLHFANLKVLVIASCGLRGSIPQW 443 (1020)
Q Consensus 364 ~~p~~~~~l~~L~~L~l~~N~i~~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~ 443 (1020)
..+..|..+++|++|++++|+++ +..|..
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~---------------------------------------------------~~~~~~ 200 (272)
T 3rfs_A 172 LPEGVFDKLTQLKDLRLYQNQLK---------------------------------------------------SVPDGV 200 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCS---------------------------------------------------CCCTTT
T ss_pred cCHHHhcCCccCCEEECCCCcCC---------------------------------------------------ccCHHH
Confidence 76667777777777777777644 344455
Q ss_pred hhcCCCCcEEecccccccccccccccCcCcCcEEeCCCCcccccCCCCCCCCccc
Q 035998 444 LRGCSKLQLVDLSWNQLSGTIPVWFGGFQDLFYLDLSNNTFTGEIPKNLTGLPSL 498 (1020)
Q Consensus 444 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 498 (1020)
+..+++|+.|+|++|.+.+. +++|++|+++.|.++|.+|.+++.+...
T Consensus 201 ~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~~ 248 (272)
T 3rfs_A 201 FDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAPD 248 (272)
T ss_dssp TTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCGG
T ss_pred HhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCCC
Confidence 67788888888888887744 4468888888888888888888877654
No 327
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=5.7e-24 Score=229.99 Aligned_cols=202 Identities=23% Similarity=0.258 Sum_probs=128.7
Q ss_pred ccEEEccCCCCCCCCCCccccccccccccccccccccccchhhhhhcccccccccccccCCCCCcccccCCCccEEEccC
Q 035998 183 IRVINLSVNYFSGTLSPGLGNCASLEHLCLGMNDLTGGIADDIFQLQKLRLLGLQDNQLSGKLSPSIADLSNLVRLDVSS 262 (1020)
Q Consensus 183 L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 262 (1020)
.+.+++++++++ .+|..+. ++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 344444444444 2333332 3455555555555544444555555555555555555544444556666666666666
Q ss_pred CcCcccCcccccCCcccceeecccccccccCCCCCcCCcccccccccccccccccccCCCCCCCcCEEEcCCCccCCCCC
Q 035998 263 NNFSGNIPDVFAGLGEFQYLVAHSNRFTGRIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNKFNGPLP 342 (1020)
Q Consensus 263 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p 342 (1020)
|++++..+..|.++++|++|++++|++++..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 66665555666666666666666666666666666677777777777777776666667777777777777777776666
Q ss_pred CCCCCCCCCCeEecCCCcccccCcccccCCCCCCeeeCCCCCCcc
Q 035998 343 TNLPRCRKLKNINLARNNFSGQIPETYKNFESLSYLSLSNSSIYN 387 (1020)
Q Consensus 343 ~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~i~~ 387 (1020)
..|..+++|++|+|++|++++..+..|..+++|+.|++++|++..
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 667777777777777777776666667777778888888877643
No 328
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=1.7e-24 Score=234.37 Aligned_cols=212 Identities=23% Similarity=0.289 Sum_probs=167.0
Q ss_pred cccccccccccccccccccccchhhhhhcccccccccccccCCCCCcccccCCCccEEEccCCcCcccCcccccCCcccc
Q 035998 201 LGNCASLEHLCLGMNDLTGGIADDIFQLQKLRLLGLQDNQLSGKLSPSIADLSNLVRLDVSSNNFSGNIPDVFAGLGEFQ 280 (1020)
Q Consensus 201 l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 280 (1020)
+..+++|++|++++|.++. ...+..+++|++|++++|++++. ..+..+++|++|++++|.+++..+..|..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 3456666667777766663 23466677777777777777752 4677778888888888888877777778888888
Q ss_pred eeecccccccccCCCCCcCCcccccccccccccccccccCCCCCCCcCEEEcCCCccCCCCCCCCCCCCCCCeEecCCCc
Q 035998 281 YLVAHSNRFTGRIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNKFNGPLPTNLPRCRKLKNINLARNN 360 (1020)
Q Consensus 281 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~ 360 (1020)
+|++++|++++..+..|.++++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|+
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 88888888887777778888888888888888887777778888999999999999998778788899999999999999
Q ss_pred ccccCcccccCCCCCCeeeCCCCCCcchhhHHHHHhhhcccchhhhhccccCCCCCCCccccccCceEEEeccccccccc
Q 035998 361 FSGQIPETYKNFESLSYLSLSNSSIYNLSSALQVLQQCRNLTTLVLTLNFRNEKLPTDPRLHFANLKVLVIASCGLRGSI 440 (1020)
Q Consensus 361 l~~~~p~~~~~l~~L~~L~l~~N~i~~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 440 (1020)
+++..|..+..+++|++|++++|++.
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~~------------------------------------------------------ 218 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDNPWD------------------------------------------------------ 218 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBC------------------------------------------------------
T ss_pred CCccCHHHHhCCcCCCEEEccCCCcc------------------------------------------------------
Confidence 99888888889999999999988742
Q ss_pred chhhhcCCCCcEEecccccccccccccccCcCcC
Q 035998 441 PQWLRGCSKLQLVDLSWNQLSGTIPVWFGGFQDL 474 (1020)
Q Consensus 441 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 474 (1020)
+.+++|+.|+++.|+++|.+|.+++.+...
T Consensus 219 ----~~~~~l~~l~~~~n~~~g~ip~~~~~~~~~ 248 (272)
T 3rfs_A 219 ----CTCPGIRYLSEWINKHSGVVRNSAGSVAPD 248 (272)
T ss_dssp ----CCTTTTHHHHHHHHHTGGGBBCTTSCBCGG
T ss_pred ----ccCcHHHHHHHHHHhCCCcccCcccccCCC
Confidence 123457778888888888888888776653
No 329
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=1.8e-27 Score=288.73 Aligned_cols=373 Identities=18% Similarity=0.219 Sum_probs=218.9
Q ss_pred cccccccccccccccccccchhhh-hhccccccccccc-ccCCC-CCcccccCCCccEEEccCCcCcccCccccc----C
Q 035998 203 NCASLEHLCLGMNDLTGGIADDIF-QLQKLRLLGLQDN-QLSGK-LSPSIADLSNLVRLDVSSNNFSGNIPDVFA----G 275 (1020)
Q Consensus 203 ~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~----~ 275 (1020)
.+++|++|+|++|.+++..+..+. .+++|++|+|++| .++.. ++..+.++++|++|+|++|.+++..+..+. .
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 344555555555555544444443 4555555555555 33321 222233455555555555555543333332 3
Q ss_pred Ccccceeeccccc--cccc-CCCCCcCCccccccccccc-ccccccccCCCCCCCcCEEEcCC-------CccCCCCCCC
Q 035998 276 LGEFQYLVAHSNR--FTGR-IPHSLSNSPTLNLLNLRNN-SLDGSLLLNCPALTNLTSLDLGT-------NKFNGPLPTN 344 (1020)
Q Consensus 276 l~~L~~L~L~~N~--l~~~-~p~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~-------N~l~~~~p~~ 344 (1020)
+++|+.|++++|. ++.. ++..+.++++|+.|++++| .+++ ++..+..+++|+.|+++. |.+.+ ++..
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~ 260 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVA 260 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHH-HHHH
Confidence 4455666665554 1110 1111233566777777766 3333 445555667777777543 44443 3346
Q ss_pred CCCCCCCCeE-ecCCCcccccCcccccCCCCCCeeeCCCCCCcchhhHHHHHhhhcccchhhhhccccCCCCCCCccccc
Q 035998 345 LPRCRKLKNI-NLARNNFSGQIPETYKNFESLSYLSLSNSSIYNLSSALQVLQQCRNLTTLVLTLNFRNEKLPTDPRLHF 423 (1020)
Q Consensus 345 l~~l~~L~~L-~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~i~~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 423 (1020)
+.++++|+.| .+.+... +.++..+..+++|++|++++|.++... ....+..+++|+.|+++.|.....+. .....+
T Consensus 261 l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~-l~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~~~ 337 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYD-LVKLLCQCPKLQRLWVLDYIEDAGLE-VLASTC 337 (594)
T ss_dssp HHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHH-HHHHHTTCTTCCEEEEEGGGHHHHHH-HHHHHC
T ss_pred HhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHH-HHHHHhcCCCcCEEeCcCccCHHHHH-HHHHhC
Confidence 7888999999 4554433 345666667899999999999966422 12335678888888888762211110 011246
Q ss_pred cCceEEEecc---------cccccccchhhh-cCCCCcEEeccccccccccccccc-CcCcCcEEeCC--C----Ccccc
Q 035998 424 ANLKVLVIAS---------CGLRGSIPQWLR-GCSKLQLVDLSWNQLSGTIPVWFG-GFQDLFYLDLS--N----NTFTG 486 (1020)
Q Consensus 424 ~~L~~L~l~~---------n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls--~----N~l~~ 486 (1020)
++|+.|++.+ +.+++.....+. ++++|+.|+++.|++++..+..+. .+++|+.|+|+ + |.+++
T Consensus 338 ~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~ 417 (594)
T 2p1m_B 338 KDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTL 417 (594)
T ss_dssp TTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTC
T ss_pred CCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccC
Confidence 7788888833 344433333333 478888888888888766665554 57888888888 3 44442
Q ss_pred cCC-----CCCCCCcccccccCcCCCCCCCcccceeecccccccccccccCCCCeeecccCccccCCCccccC-CCcceE
Q 035998 487 EIP-----KNLTGLPSLITRNISLEEPSPDFPFFMRRNVSARGLQYNQIWSFPPTIDLSLNRLDGSIWPEFGN-LKKLHV 560 (1020)
Q Consensus 487 ~~p-----~~~~~l~~L~~l~~s~~~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~l~Ls~N~l~~~~~~~~~~-L~~L~~ 560 (1020)
... ..+.++++| +.|+|++ .+++..+..++. +++|+.
T Consensus 418 ~~~~~~~~~l~~~~~~L------------------------------------~~L~L~~-~l~~~~~~~l~~~~~~L~~ 460 (594)
T 2p1m_B 418 EPLDIGFGAIVEHCKDL------------------------------------RRLSLSG-LLTDKVFEYIGTYAKKMEM 460 (594)
T ss_dssp CCTHHHHHHHHHHCTTC------------------------------------CEEECCS-SCCHHHHHHHHHHCTTCCE
T ss_pred CchhhHHHHHHhhCCCc------------------------------------cEEeecC-cccHHHHHHHHHhchhccE
Confidence 110 112223333 3566655 555554555555 788999
Q ss_pred EEecCCcceeccCccc-cCCCcccEEEccCCcccccCCc-ccccccccccccccccccc
Q 035998 561 FDLKHNNLSGPIPSEL-TGMTSLETLDLSYNNLSGAIPI-SLEKLSFLSKFSVANNHLT 617 (1020)
Q Consensus 561 L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~g~ip~-~l~~l~~L~~l~ls~N~l~ 617 (1020)
|+|++|.+++..+..+ ..+++|++|+|++|.+++..+. .+..+++|+.|++++|+++
T Consensus 461 L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 461 LSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp EEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred eeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 9999998876555555 6688899999999988755444 3455888999999998874
No 330
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=1.1e-23 Score=229.75 Aligned_cols=177 Identities=21% Similarity=0.170 Sum_probs=104.0
Q ss_pred cccccccccccccccchhhhhhcccccccccccccCCCCCcccccCCCccEEEccCCcCcccCcccccCCcccceeeccc
Q 035998 207 LEHLCLGMNDLTGGIADDIFQLQKLRLLGLQDNQLSGKLSPSIADLSNLVRLDVSSNNFSGNIPDVFAGLGEFQYLVAHS 286 (1020)
Q Consensus 207 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 286 (1020)
++.|+|++|++++..+..|..+++|++|+|++|+|++..+ ...+++|++|+|++|+++ .+|..+.++++|++|++++
T Consensus 33 l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~ 109 (290)
T 1p9a_G 33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSF 109 (290)
T ss_dssp CCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCS
T ss_pred CCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCC
Confidence 3333333333333333334444444444444444432211 134455555555555555 4445555555566666666
Q ss_pred ccccccCCCCCcCCcccccccccccccccccccCCCCCCCcCEEEcCCCccCCCCCCCCCCCCCCCeEecCCCcccccCc
Q 035998 287 NRFTGRIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNKFNGPLPTNLPRCRKLKNINLARNNFSGQIP 366 (1020)
Q Consensus 287 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 366 (1020)
|++++..|..|.++++|++|+|++|++++..+..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|+++ .+|
T Consensus 110 N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip 188 (290)
T 1p9a_G 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIP 188 (290)
T ss_dssp SCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCC
T ss_pred CcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccC
Confidence 6665555556666666666666666666665666666777777777777777555556677777777777777777 566
Q ss_pred ccccCCCCCCeeeCCCCCCcc
Q 035998 367 ETYKNFESLSYLSLSNSSIYN 387 (1020)
Q Consensus 367 ~~~~~l~~L~~L~l~~N~i~~ 387 (1020)
..+..+.+|+.|+|++|++..
T Consensus 189 ~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 189 KGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp TTTTTTCCCSEEECCSCCBCC
T ss_pred hhhcccccCCeEEeCCCCccC
Confidence 666667777788888777653
No 331
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=1.6e-23 Score=228.36 Aligned_cols=202 Identities=27% Similarity=0.255 Sum_probs=187.0
Q ss_pred CCCCcceeeeccCccCCCCCccccccCCcccEEEccCCCCCCCCCCccccccccccccccccccccccchhhhhhccccc
Q 035998 154 NLPSIQVLDISSNSLNGSVPTSICKNSSRIRVINLSVNYFSGTLSPGLGNCASLEHLCLGMNDLTGGIADDIFQLQKLRL 233 (1020)
Q Consensus 154 ~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 233 (1020)
++++|+++++++|.++ .+|..++ ++++.|+|++|.+++..+..|.++++|++|+|++|.+++..+. ..+++|++
T Consensus 8 ~l~~l~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~ 81 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGT 81 (290)
T ss_dssp CSTTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCE
T ss_pred ccCCccEEECCCCCCC-cCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCE
Confidence 6889999999999998 8888774 6899999999999998889999999999999999999965443 78999999
Q ss_pred ccccccccCCCCCcccccCCCccEEEccCCcCcccCcccccCCcccceeecccccccccCCCCCcCCccccccccccccc
Q 035998 234 LGLQDNQLSGKLSPSIADLSNLVRLDVSSNNFSGNIPDVFAGLGEFQYLVAHSNRFTGRIPHSLSNSPTLNLLNLRNNSL 313 (1020)
Q Consensus 234 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 313 (1020)
|+|++|+++ .+|..+..+++|++|+|++|+|++..|..|.++++|++|++++|++++..+..|..+++|+.|+|++|++
T Consensus 82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence 999999999 6788899999999999999999988889999999999999999999998888899999999999999999
Q ss_pred ccccccCCCCCCCcCEEEcCCCccCCCCCCCCCCCCCCCeEecCCCcccc
Q 035998 314 DGSLLLNCPALTNLTSLDLGTNKFNGPLPTNLPRCRKLKNINLARNNFSG 363 (1020)
Q Consensus 314 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 363 (1020)
+...+..|..+++|++|+|++|+|+ .+|..+..+.+|+.|+|++|++..
T Consensus 161 ~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 9888888899999999999999999 788888889999999999999874
No 332
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=99.90 E-value=1.2e-24 Score=257.40 Aligned_cols=186 Identities=16% Similarity=0.146 Sum_probs=146.7
Q ss_pred CcCCeeeccCCeEEEEEEeCCCCEEEEEEecCCch--------hhHHHHHHHHHHHHHcCCCccceEeeEEeccCceEEE
Q 035998 745 DQANIIGCGGFGLVYRATLPDGRNVAIKRLSGDCG--------QMEREFRAEVEALSRAQHPNLVHLQGYCMHKNDRLLI 816 (1020)
Q Consensus 745 ~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~--------~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 816 (1020)
...++||+|+||.||+|.. .++.+|+|+...... ...+.+.+|++++++++||||+++..++...+..++|
T Consensus 339 ~~~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lV 417 (540)
T 3en9_A 339 IPEHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIM 417 (540)
T ss_dssp ---------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEE
T ss_pred CCCCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEE
Confidence 4467899999999999965 578899998654321 1134588999999999999999777777778888999
Q ss_pred EEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeecccccccc
Q 035998 817 YSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLIL 896 (1020)
Q Consensus 817 ~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~ 896 (1020)
|||+++++|.+++.. +..++.|+++||+|||++ +|+||||||+||+++. .+||+|||+++...
T Consensus 418 mE~~~ggsL~~~l~~------------~~~i~~qi~~aL~~LH~~---gIiHrDiKp~NILl~~--~~kL~DFGla~~~~ 480 (540)
T 3en9_A 418 MSYINGKLAKDVIED------------NLDIAYKIGEIVGKLHKN---DVIHNDLTTSNFIFDK--DLYIIDFGLGKISN 480 (540)
T ss_dssp EECCCSEEHHHHSTT------------CTHHHHHHHHHHHHHHHT---TEECTTCCTTSEEESS--SEEECCCTTCEECC
T ss_pred EECCCCCCHHHHHHH------------HHHHHHHHHHHHHHHHHC---cCccCCCCHHHEEECC--eEEEEECccCEECC
Confidence 999999999999875 458999999999999999 9999999999999998 99999999999874
Q ss_pred CCCCcc-----cccccccccCccCccccCC--CCCCchhhHHHHHHHHHHHHcCCCCCC
Q 035998 897 SPYDTH-----VTTDLVGTLGYIPPEYGQA--SVATYKGDVYSFGVVLLELLTGKRPMD 948 (1020)
Q Consensus 897 ~~~~~~-----~~~~~~gt~~y~aPE~~~~--~~~~~~~DvwSlGvil~elltg~~pf~ 948 (1020)
...... ......||+.|||||++.. ..|+.++|+|+..+-..+.+.++.+|.
T Consensus 481 ~~~~~~~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY~ 539 (540)
T 3en9_A 481 LDEDKAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARYV 539 (540)
T ss_dssp CHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCCC
T ss_pred CccccccchhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccC
Confidence 322111 1235689999999999876 668888999999998888888777663
No 333
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=1.8e-23 Score=223.41 Aligned_cols=190 Identities=22% Similarity=0.272 Sum_probs=138.1
Q ss_pred CCCcCceEEcCCCCCCCCCCCCCCCceEEEecCCCcccccccccccCCCCCcEEecCCCCCCCCCCccccCCCCCCeeec
Q 035998 61 DCCHWVGITCNSSSSLGLNDSIGSGRVTGLFLYKRRLKGKLSESLGNLVQLRFLNLSHNLLKGTVPVSLVNLPNLEVLDL 140 (1020)
Q Consensus 61 ~~C~w~gv~C~~~~~~~~~~~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 140 (1020)
+||.|.|.+|.. ..+.+++.+++++ .+|..+. ++|++|+|++|++++..|..|+++++|++|+|
T Consensus 3 ~Cp~~~gC~C~~-------------~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 66 (251)
T 3m19_A 3 TCETVTGCTCNE-------------GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNL 66 (251)
T ss_dssp -CHHHHSSEEEG-------------GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCCCceEcCC-------------CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEEC
Confidence 688999999953 3446788888887 4666555 68999999999999888888999999999999
Q ss_pred cCCCCCCCCCCcc-CCCCcceeeeccCccCCCCCccccccCCcccEEEccCCCCCCCCCCcccccccccccccccccccc
Q 035998 141 SSNDLSGPLPQTI-NLPSIQVLDISSNSLNGSVPTSICKNSSRIRVINLSVNYFSGTLSPGLGNCASLEHLCLGMNDLTG 219 (1020)
Q Consensus 141 ~~n~l~~~~p~~~-~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 219 (1020)
++|.|++..+..+ ++++|++|+|++|+++ .+|...+..+++|++|+|++|++++..+..|..+++|++|+|++|++++
T Consensus 67 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 145 (251)
T 3m19_A 67 DYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS 145 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCcCCccCHhHhccCCcCCEEECCCCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc
Confidence 9999998888777 7888888888888887 5565555667777777777777776555556666666666666666665
Q ss_pred ccchhhhhhcccccccccccccCCCCCcccccCCCccEEEccCCcCcc
Q 035998 220 GIADDIFQLQKLRLLGLQDNQLSGKLSPSIADLSNLVRLDVSSNNFSG 267 (1020)
Q Consensus 220 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 267 (1020)
..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|.+++
T Consensus 146 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 146 IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred cCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 555556666666666666666665555556666666666666666553
No 334
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=2.4e-25 Score=249.45 Aligned_cols=267 Identities=15% Similarity=0.187 Sum_probs=151.3
Q ss_pred CCCCcCceEEcCCCCCCCCCCCCCCCceEEEecCCCcccccccccccCC--CCCcEEecCCCCCCCCCCccccCCCCCCe
Q 035998 60 SDCCHWVGITCNSSSSLGLNDSIGSGRVTGLFLYKRRLKGKLSESLGNL--VQLRFLNLSHNLLKGTVPVSLVNLPNLEV 137 (1020)
Q Consensus 60 ~~~C~w~gv~C~~~~~~~~~~~~~~~~v~~l~l~~~~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 137 (1020)
.-|.+|+++.|+.. .++.++++++.+. +..+..+ ++++.|++++|.+++..+. +..+++|++
T Consensus 34 ~vc~~W~~~~~~~~------------~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~ 97 (336)
T 2ast_B 34 GVCKRWYRLASDES------------LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQH 97 (336)
T ss_dssp SSCHHHHHHHTCST------------TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCE
T ss_pred HHHHHHHHHhcCch------------hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCE
Confidence 34667999998642 3556777766655 3445555 6667777777766654443 445666666
Q ss_pred eeccCCCCCCC-CCCcc-CCCCcceeeeccCccCCCCCccccccCCcccEEEccCCCCCCCCCCcccccccccccccccc
Q 035998 138 LDLSSNDLSGP-LPQTI-NLPSIQVLDISSNSLNGSVPTSICKNSSRIRVINLSVNYFSGTLSPGLGNCASLEHLCLGMN 215 (1020)
Q Consensus 138 L~L~~n~l~~~-~p~~~-~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N 215 (1020)
|+|++|.+++. +|..+ .+++|++|+|++|.+++ ..+..++.+++|++|+|++|
T Consensus 98 L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~-------------------------~~~~~l~~~~~L~~L~L~~~ 152 (336)
T 2ast_B 98 MDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD-------------------------PIVNTLAKNSNLVRLNLSGC 152 (336)
T ss_dssp EECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCH-------------------------HHHHHHTTCTTCSEEECTTC
T ss_pred EEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCH-------------------------HHHHHHhcCCCCCEEECCCC
Confidence 66666666543 34333 45555555555555543 33444444555555555555
Q ss_pred -cccc-ccchhhhhhccccccccccc-ccCCC-CCcccccCC-CccEEEccCC--cCc-ccCcccccCCcccceeecccc
Q 035998 216 -DLTG-GIADDIFQLQKLRLLGLQDN-QLSGK-LSPSIADLS-NLVRLDVSSN--NFS-GNIPDVFAGLGEFQYLVAHSN 287 (1020)
Q Consensus 216 -~l~~-~~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~-~L~~L~Ls~N--~l~-~~~p~~~~~l~~L~~L~L~~N 287 (1020)
.+++ .++..+..+++|++|++++| ++++. ++..+..++ +|++|++++| .++ +.+|..+..+++|++|++++|
T Consensus 153 ~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 232 (336)
T 2ast_B 153 SGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDS 232 (336)
T ss_dssp BSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTC
T ss_pred CCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCC
Confidence 3443 24444555555555555555 55532 344455555 6666666666 333 334455555666666666666
Q ss_pred c-ccccCCCCCcCCcccccccccccc-cccccccCCCCCCCcCEEEcCCCccCCCCCCCCCCC-CCCCeEecCCCccccc
Q 035998 288 R-FTGRIPHSLSNSPTLNLLNLRNNS-LDGSLLLNCPALTNLTSLDLGTNKFNGPLPTNLPRC-RKLKNINLARNNFSGQ 364 (1020)
Q Consensus 288 ~-l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~L~L~~N~l~~~ 364 (1020)
. +++..+..+..+++|+.|++++|. +.......+..+++|++|++++| ++ ...+..+ .+|+.|++++|++++.
T Consensus 233 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l~~~ 308 (336)
T 2ast_B 233 VMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHFTTI 308 (336)
T ss_dssp TTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCSCCT
T ss_pred CcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEecccCccc
Confidence 5 555555556666666666666663 32222224556777777777777 32 2233333 2366667777777777
Q ss_pred CcccccC
Q 035998 365 IPETYKN 371 (1020)
Q Consensus 365 ~p~~~~~ 371 (1020)
.|..++.
T Consensus 309 ~~~~~~~ 315 (336)
T 2ast_B 309 ARPTIGN 315 (336)
T ss_dssp TCSSCSS
T ss_pred cCCcccc
Confidence 7766554
No 335
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=7.9e-25 Score=247.53 Aligned_cols=251 Identities=21% Similarity=0.222 Sum_probs=182.3
Q ss_pred EecCCCcccccccccccCCCCCcEEecCCCCCCCCCC----ccccCCC-CCCeeeccCCCCCCCCCCcc-CC-----CCc
Q 035998 90 LFLYKRRLKGKLSESLGNLVQLRFLNLSHNLLKGTVP----VSLVNLP-NLEVLDLSSNDLSGPLPQTI-NL-----PSI 158 (1020)
Q Consensus 90 l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p----~~l~~l~-~L~~L~L~~n~l~~~~p~~~-~l-----~~L 158 (1020)
..++.++++|.+|..+...++|++|+|++|.+++..+ ..|.+++ +|++|+|++|+|++..+..+ .+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4677888898888888888889999999999986666 7788888 89999999999988777665 43 889
Q ss_pred ceeeeccCccCCCCCccccc---cC-CcccEEEccCCCCCCCCCCcccc-----ccccccccccccccccccchhh----
Q 035998 159 QVLDISSNSLNGSVPTSICK---NS-SRIRVINLSVNYFSGTLSPGLGN-----CASLEHLCLGMNDLTGGIADDI---- 225 (1020)
Q Consensus 159 ~~L~Ls~N~l~~~ip~~~~~---~~-~~L~~L~L~~N~l~~~~~~~l~~-----l~~L~~L~L~~N~l~~~~~~~~---- 225 (1020)
++|+|++|++++..+..++. .. ++|+.|+|++|.+++..+..++. .++|++|+|++|.+++..+..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 99999999988655554432 23 78888999988888766554433 2588888888888885444443
Q ss_pred hhhc-ccccccccccccCCCCCccccc----C-CCccEEEccCCcCccc----CcccccC-CcccceeecccccccccCC
Q 035998 226 FQLQ-KLRLLGLQDNQLSGKLSPSIAD----L-SNLVRLDVSSNNFSGN----IPDVFAG-LGEFQYLVAHSNRFTGRIP 294 (1020)
Q Consensus 226 ~~l~-~L~~L~L~~N~l~~~~~~~~~~----l-~~L~~L~Ls~N~l~~~----~p~~~~~-l~~L~~L~L~~N~l~~~~p 294 (1020)
..++ +|++|+|++|++++..+..+.. . ++|++|+|++|.|++. ++..+.. .++|++|++++|++++..+
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 4444 8888888888888766655443 3 5888888888888763 3444544 3478888888888876543
Q ss_pred ----CCCcCCcccccccccccccccc-------cccCCCCCCCcCEEEcCCCccCCC
Q 035998 295 ----HSLSNSPTLNLLNLRNNSLDGS-------LLLNCPALTNLTSLDLGTNKFNGP 340 (1020)
Q Consensus 295 ----~~~~~l~~L~~L~L~~N~l~~~-------~~~~~~~l~~L~~L~L~~N~l~~~ 340 (1020)
..+..+++|+.|+|++|.+.+. ++..+..+++|+.||+++|++.+.
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 3456667788888888874432 233566677777777777777654
No 336
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=2.5e-23 Score=220.57 Aligned_cols=220 Identities=20% Similarity=0.230 Sum_probs=119.7
Q ss_pred CCCCCCCcC-ce--EEcCCCCCCCCCCCCCCCceEEEecCCCcccccccccccCCCCCcEEecCCCC-CCCCCCccccCC
Q 035998 57 ASSSDCCHW-VG--ITCNSSSSLGLNDSIGSGRVTGLFLYKRRLKGKLSESLGNLVQLRFLNLSHNL-LKGTVPVSLVNL 132 (1020)
Q Consensus 57 ~~~~~~C~w-~g--v~C~~~~~~~~~~~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l 132 (1020)
++..+.|.+ .+ |.|.. .+.+|. .+ ..++.|++++|++++..+..++++++|++|+|++|. +++..+..|.++
T Consensus 4 cp~~C~C~~~~~~~v~c~~--l~~ip~-~~-~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l 79 (239)
T 2xwt_C 4 SSPPCECHQEEDFRVTCKD--IQRIPS-LP-PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNL 79 (239)
T ss_dssp CSSSCSEEECSTTEEEECS--CSSCCC-CC-TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESC
T ss_pred CCCCCeeCCCCcceeEccC--ccccCC-CC-CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCC
Confidence 344444643 54 55975 444554 22 355555555555555444455555555555555554 543333345555
Q ss_pred CCCCeeeccC-CCCCCCCCCcc-CCCCcceeeeccCccCCCCCccccccCCcccEEEccCCCCCCCCCCccccccccc--
Q 035998 133 PNLEVLDLSS-NDLSGPLPQTI-NLPSIQVLDISSNSLNGSVPTSICKNSSRIRVINLSVNYFSGTLSPGLGNCASLE-- 208 (1020)
Q Consensus 133 ~~L~~L~L~~-n~l~~~~p~~~-~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~-- 208 (1020)
++|++|+|++ |++++..+..+ ++++|++|+|++|++++ +|. |+.+++|+
T Consensus 80 ~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~--------------------------~~~l~~L~~L 132 (239)
T 2xwt_C 80 SKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD--------------------------LTKVYSTDIF 132 (239)
T ss_dssp TTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC--------------------------CTTCCBCCSE
T ss_pred cCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc--------------------------cccccccccc
Confidence 5555555555 55555444444 45555555555555542 333 44444444
Q ss_pred -ccccccc-ccccccchhhhhhcccc-cccccccccCCCCCcccccCCCccEEEccCCc-CcccCcccccCC-cccceee
Q 035998 209 -HLCLGMN-DLTGGIADDIFQLQKLR-LLGLQDNQLSGKLSPSIADLSNLVRLDVSSNN-FSGNIPDVFAGL-GEFQYLV 283 (1020)
Q Consensus 209 -~L~L~~N-~l~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l-~~L~~L~ 283 (1020)
+|++++| ++++..+..|.++++|+ +|++++|+++...+..+.. ++|++|++++|+ +++..+..|.++ ++|+.|+
T Consensus 133 ~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~ 211 (239)
T 2xwt_C 133 FILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD 211 (239)
T ss_dssp EEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEE
T ss_pred cEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEE
Confidence 5566655 55544445555566666 6666666665322233333 566666666663 665556666666 6677777
Q ss_pred cccccccccCCCCCcCCccccccccccc
Q 035998 284 AHSNRFTGRIPHSLSNSPTLNLLNLRNN 311 (1020)
Q Consensus 284 L~~N~l~~~~p~~~~~l~~L~~L~L~~N 311 (1020)
+++|++++..+. .+++|+.|+++++
T Consensus 212 l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 212 VSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCCccccCChh---HhccCceeeccCc
Confidence 777766644333 3456666666654
No 337
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=2.8e-23 Score=229.42 Aligned_cols=225 Identities=16% Similarity=0.177 Sum_probs=165.8
Q ss_pred CCCcEEecCCCCCCCCCCc---cccCCCCCCeeeccCCCCCCCCCCcc---CCCCcceeeeccCccCCCCCc---ccccc
Q 035998 109 VQLRFLNLSHNLLKGTVPV---SLVNLPNLEVLDLSSNDLSGPLPQTI---NLPSIQVLDISSNSLNGSVPT---SICKN 179 (1020)
Q Consensus 109 ~~L~~L~L~~n~l~~~~p~---~l~~l~~L~~L~L~~n~l~~~~p~~~---~l~~L~~L~Ls~N~l~~~ip~---~~~~~ 179 (1020)
..++.|.+.++.++...-. .+..+++|++|+|++|.+++..|..+ .+++|++|+|++|++++..|. ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3467777777776522110 12234668888888888887777663 578888888888888765551 22236
Q ss_pred CCcccEEEccCCCCCCCCCCccccccccccccccccccccc--c--chhhhhhcccccccccccccCCCCCc----cccc
Q 035998 180 SSRIRVINLSVNYFSGTLSPGLGNCASLEHLCLGMNDLTGG--I--ADDIFQLQKLRLLGLQDNQLSGKLSP----SIAD 251 (1020)
Q Consensus 180 ~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~--~--~~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~ 251 (1020)
+++|++|+|++|++.+..+..|+++++|++|+|++|++.+. + +..+..+++|++|+|++|+++ .++. .+.+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence 77888888888888877778888888888888888887642 2 122357788888888888887 3333 2567
Q ss_pred CCCccEEEccCCcCcccCcccccCC---cccceeecccccccccCCCCCcCCcccccccccccccccccccCCCCCCCcC
Q 035998 252 LSNLVRLDVSSNNFSGNIPDVFAGL---GEFQYLVAHSNRFTGRIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLT 328 (1020)
Q Consensus 252 l~~L~~L~Ls~N~l~~~~p~~~~~l---~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 328 (1020)
+++|++|+|++|++++..|..+..+ ++|++|++++|+|+ .+|..+. ++|+.|+|++|++++. |. +..+++|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~ 297 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD 297 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence 7888888888888888777777766 58899999999988 5566664 7899999999999865 22 67789999
Q ss_pred EEEcCCCccCC
Q 035998 329 SLDLGTNKFNG 339 (1020)
Q Consensus 329 ~L~L~~N~l~~ 339 (1020)
.|+|++|+|+.
T Consensus 298 ~L~L~~N~l~~ 308 (310)
T 4glp_A 298 NLTLDGNPFLV 308 (310)
T ss_dssp CEECSSTTTSC
T ss_pred EEECcCCCCCC
Confidence 99999999874
No 338
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=3.9e-23 Score=219.16 Aligned_cols=196 Identities=15% Similarity=0.171 Sum_probs=131.9
Q ss_pred cccEEEccCCCCCCCCCCccccccccccccccccc-cccccchhhhhhcccccccccc-cccCCCCCcccccCCCccEEE
Q 035998 182 RIRVINLSVNYFSGTLSPGLGNCASLEHLCLGMND-LTGGIADDIFQLQKLRLLGLQD-NQLSGKLSPSIADLSNLVRLD 259 (1020)
Q Consensus 182 ~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~ 259 (1020)
+|+.|++++|++++..+..|+++++|++|+|++|+ +++..+..|.++++|++|++++ |++++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56666666666665555566666677777777775 6655555666667777777776 677655556677777777777
Q ss_pred ccCCcCcccCcccccCCcccc---eeecccc-cccccCCCCCcCCcccc-cccccccccccccccCCCCCCCcCEEEcCC
Q 035998 260 VSSNNFSGNIPDVFAGLGEFQ---YLVAHSN-RFTGRIPHSLSNSPTLN-LLNLRNNSLDGSLLLNCPALTNLTSLDLGT 334 (1020)
Q Consensus 260 Ls~N~l~~~~p~~~~~l~~L~---~L~L~~N-~l~~~~p~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 334 (1020)
+++|++++ +|. |..+++|+ +|++++| ++++..+..|.++++|+ .|++++|+++...+..+.. ++|++|+|++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 77777765 444 66666666 7777777 77766666677777777 7777777777444444544 6777777777
Q ss_pred Cc-cCCCCCCCCCCC-CCCCeEecCCCcccccCcccccCCCCCCeeeCCCC
Q 035998 335 NK-FNGPLPTNLPRC-RKLKNINLARNNFSGQIPETYKNFESLSYLSLSNS 383 (1020)
Q Consensus 335 N~-l~~~~p~~l~~l-~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N 383 (1020)
|+ +++..+..|..+ ++|+.|++++|++++. |.. .+++|+.|+++++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNT 236 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCc
Confidence 74 776666677777 7777777777777743 332 5667777777765
No 339
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=5.1e-25 Score=251.69 Aligned_cols=258 Identities=20% Similarity=0.254 Sum_probs=160.9
Q ss_pred CCCCCcCCccccccccccccccccc----ccCCCCCCCcCEEEcCCC---ccCCCCCCCC-------CCCCCCCeEecCC
Q 035998 293 IPHSLSNSPTLNLLNLRNNSLDGSL----LLNCPALTNLTSLDLGTN---KFNGPLPTNL-------PRCRKLKNINLAR 358 (1020)
Q Consensus 293 ~p~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N---~l~~~~p~~l-------~~l~~L~~L~L~~ 358 (1020)
++..+..+++|+.|+|++|.++... +..+..+++|++|+|++| ++++.+|..+ ..+++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 3444555566666666666666542 234666777778877775 3444455444 5778888888888
Q ss_pred Ccccc----cCcccccCCCCCCeeeCCCCCCcchhhHHHHHhh-hcccchhhhhccccCCCCCCCccccccCceEEEecc
Q 035998 359 NNFSG----QIPETYKNFESLSYLSLSNSSIYNLSSALQVLQQ-CRNLTTLVLTLNFRNEKLPTDPRLHFANLKVLVIAS 433 (1020)
Q Consensus 359 N~l~~----~~p~~~~~l~~L~~L~l~~N~i~~l~~~~~~l~~-l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~ 433 (1020)
|++++ .+|..+..+++|++|+|++|.++..... .+.. +..+....+... .++|+.|++++
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~--~l~~~l~~l~~~~~~~~-------------~~~L~~L~L~~ 168 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGA--KIARALQELAVNKKAKN-------------APPLRSIICGR 168 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHH--HHHHHHHHHHHHHHHHT-------------CCCCCEEECCS
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHH--HHHHHHHHHhhhhhccc-------------CCCCcEEECCC
Confidence 88886 4677788888888888888887643221 1111 111111111000 03455555555
Q ss_pred cccc-cccc---hhhhcCCCCcEEeccccccc--c---cccccccCcCcCcEEeCCCCcccccCCCCCCCCcccccccCc
Q 035998 434 CGLR-GSIP---QWLRGCSKLQLVDLSWNQLS--G---TIPVWFGGFQDLFYLDLSNNTFTGEIPKNLTGLPSLITRNIS 504 (1020)
Q Consensus 434 n~l~-~~~p---~~l~~l~~L~~L~Ls~N~l~--~---~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~s 504 (1020)
|.+. +.+| ..+..+++|+.|+|++|+|+ | ..|..+..+++|++|+|++|.++..-
T Consensus 169 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g---------------- 232 (386)
T 2ca6_A 169 NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG---------------- 232 (386)
T ss_dssp SCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH----------------
T ss_pred CCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH----------------
Confidence 5554 2333 34455556666666666555 2 23335555555666666555554100
Q ss_pred CCCCCCCcccceeecccccccccccccCCCCeeecccCccccCCCccccCCCcceEEEecCCcceec----cCccc--cC
Q 035998 505 LEEPSPDFPFFMRRNVSARGLQYNQIWSFPPTIDLSLNRLDGSIWPEFGNLKKLHVFDLKHNNLSGP----IPSEL--TG 578 (1020)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~l~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~----~p~~~--~~ 578 (1020)
.+.+|..+..+++|+.|+|++|++++. +|..+ +.
T Consensus 233 ----------------------------------------~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~ 272 (386)
T 2ca6_A 233 ----------------------------------------SSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE 272 (386)
T ss_dssp ----------------------------------------HHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCS
T ss_pred ----------------------------------------HHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhcc
Confidence 023445667778889999999998765 56666 44
Q ss_pred CCcccEEEccCCcccc----cCCccc-cccccccccccccccccccCC
Q 035998 579 MTSLETLDLSYNNLSG----AIPISL-EKLSFLSKFSVANNHLTGRIP 621 (1020)
Q Consensus 579 l~~L~~L~Ls~N~l~g----~ip~~l-~~l~~L~~l~ls~N~l~g~~p 621 (1020)
+++|++|+|++|++++ .+|..+ .++++|+.|++++|++++..|
T Consensus 273 ~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 8899999999999987 488888 668999999999999987554
No 340
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=5.1e-25 Score=249.09 Aligned_cols=47 Identities=15% Similarity=0.204 Sum_probs=32.2
Q ss_pred hhhcCCCCcEEeccccccccc-------ccccccCcCcCcEEeCCCCcccccCC
Q 035998 443 WLRGCSKLQLVDLSWNQLSGT-------IPVWFGGFQDLFYLDLSNNTFTGEIP 489 (1020)
Q Consensus 443 ~l~~l~~L~~L~Ls~N~l~~~-------~p~~~~~l~~L~~L~Ls~N~l~~~~p 489 (1020)
.+..+++|+.|+|++|++.+. ++..+..+++|+.|||++|++.+..+
T Consensus 248 ~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 248 LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp TTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred HHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 345567788888888874432 34466777888888888888775533
No 341
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=2.2e-23 Score=230.32 Aligned_cols=202 Identities=20% Similarity=0.266 Sum_probs=150.7
Q ss_pred CcccEEEccCCCCCCCCCCcc--ccccccccccccccccccccc----hhhhhhcccccccccccccCCCCCcccccCCC
Q 035998 181 SRIRVINLSVNYFSGTLSPGL--GNCASLEHLCLGMNDLTGGIA----DDIFQLQKLRLLGLQDNQLSGKLSPSIADLSN 254 (1020)
Q Consensus 181 ~~L~~L~L~~N~l~~~~~~~l--~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 254 (1020)
++|++|++++|.+++..|..+ +.+++|++|+|++|.+++..+ ..+..+++|++|+|++|++++..+..|..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 345555555555555666665 677777777777777776444 34456788888888888888777788888888
Q ss_pred ccEEEccCCcCccc---C-cccccCCcccceeecccccccccCC--C-CCcCCcccccccccccccccccccCCCCC---
Q 035998 255 LVRLDVSSNNFSGN---I-PDVFAGLGEFQYLVAHSNRFTGRIP--H-SLSNSPTLNLLNLRNNSLDGSLLLNCPAL--- 324 (1020)
Q Consensus 255 L~~L~Ls~N~l~~~---~-p~~~~~l~~L~~L~L~~N~l~~~~p--~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l--- 324 (1020)
|++|+|++|++.+. . +..+..+++|++|++++|+++...+ . .++++++|++|+|++|++++..|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 88888888887652 2 2334678888888888888863221 1 24677888889999998888777666655
Q ss_pred CCcCEEEcCCCccCCCCCCCCCCCCCCCeEecCCCcccccCcccccCCCCCCeeeCCCCCCcc
Q 035998 325 TNLTSLDLGTNKFNGPLPTNLPRCRKLKNINLARNNFSGQIPETYKNFESLSYLSLSNSSIYN 387 (1020)
Q Consensus 325 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~i~~ 387 (1020)
++|++|+|++|+|+ .+|..+. ++|++|+|++|++++. |. +..+++|+.|++++|+|+.
T Consensus 251 ~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 251 SALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp TTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 68999999999998 6677765 7899999999999864 33 6778899999999998754
No 342
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.88 E-value=8e-23 Score=229.81 Aligned_cols=216 Identities=19% Similarity=0.193 Sum_probs=137.5
Q ss_pred CCCcCceEEcCCCCCCCCCCCCCCCceEEEecCCCcccccccccccCCCCCcEEecCCCCCCCCCCc-cccCCCCCCe-e
Q 035998 61 DCCHWVGITCNSSSSLGLNDSIGSGRVTGLFLYKRRLKGKLSESLGNLVQLRFLNLSHNLLKGTVPV-SLVNLPNLEV-L 138 (1020)
Q Consensus 61 ~~C~w~gv~C~~~~~~~~~~~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~-L 138 (1020)
+.|+|..|.|++...+.||.+++ .+++.|+|++|+|+...+.+|.++++|++|+|++|++.+.+|. .|.++++|++ +
T Consensus 7 C~C~~~~v~C~~~~Lt~iP~~l~-~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l 85 (350)
T 4ay9_X 7 CHCSNRVFLCQESKVTEIPSDLP-RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85 (350)
T ss_dssp SEEETTEEEEESTTCCSCCTTCC-TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEE
T ss_pred cEeeCCEEEecCCCCCccCcCcC-CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhh
Confidence 45899999999888888887764 4677888888888765556678888888888888887665654 5677777665 5
Q ss_pred eccCCCCCCCCCCcc-CCCCcceeeeccCccCCCCCccccccCCcccEEEccC-CCCCCCCCCcccccc-cccccccccc
Q 035998 139 DLSSNDLSGPLPQTI-NLPSIQVLDISSNSLNGSVPTSICKNSSRIRVINLSV-NYFSGTLSPGLGNCA-SLEHLCLGMN 215 (1020)
Q Consensus 139 ~L~~n~l~~~~p~~~-~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~-N~l~~~~~~~l~~l~-~L~~L~L~~N 215 (1020)
++++|+|+...|..+ .+++|++|++++|+++ .+|...+....++..+++.+ |++....+..|..+. .++.|+|++|
T Consensus 86 ~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N 164 (350)
T 4ay9_X 86 IEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN 164 (350)
T ss_dssp EEEETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS
T ss_pred cccCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc
Confidence 556678877777776 6778888888888777 44444444455566666654 455544444555543 4566666666
Q ss_pred ccccccchhhhhhcccccccccc-cccCCCCCcccccCCCccEEEccCCcCcccCcccccCCccc
Q 035998 216 DLTGGIADDIFQLQKLRLLGLQD-NQLSGKLSPSIADLSNLVRLDVSSNNFSGNIPDVFAGLGEF 279 (1020)
Q Consensus 216 ~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 279 (1020)
+|+ .++...+...+|+.|++++ |.++...+.+|.++++|++|||++|+|+...+..|.++++|
T Consensus 165 ~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L 228 (350)
T 4ay9_X 165 GIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKL 228 (350)
T ss_dssp CCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEE
T ss_pred ccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHh
Confidence 666 3444444445556666553 44443333455555666666666666554444444433333
No 343
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.88 E-value=2.1e-22 Score=208.49 Aligned_cols=186 Identities=22% Similarity=0.246 Sum_probs=112.6
Q ss_pred CCCCCCcCceEEcCCCCCCCCCCCCCCCceEEEecCCCcccccccccccCCCCCcEEecCCCCCCCCCCccccCCCCCCe
Q 035998 58 SSSDCCHWVGITCNSSSSLGLNDSIGSGRVTGLFLYKRRLKGKLSESLGNLVQLRFLNLSHNLLKGTVPVSLVNLPNLEV 137 (1020)
Q Consensus 58 ~~~~~C~w~gv~C~~~~~~~~~~~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 137 (1020)
+..+.|.|.+|.|+..+.+.+|.... .+++.|++++|.+++..+..++++++|++|+|++|++++..+..|..+++|++
T Consensus 2 p~~C~C~~~~v~c~~~~l~~~p~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 80 (208)
T 2o6s_A 2 PSRCSCSGTTVECYSQGRTSVPTGIP-AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTY 80 (208)
T ss_dssp CTTCEEETTEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCEECCCEEEecCCCccCCCCCCC-CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCE
Confidence 44567999999999877766665553 36666666666666555555666666666666666666544445566666666
Q ss_pred eeccCCCCCCCCCCcc-CCCCcceeeeccCccCCCCCccccccCCcccEEEccCCCCCCCCCCccccccccccccccccc
Q 035998 138 LDLSSNDLSGPLPQTI-NLPSIQVLDISSNSLNGSVPTSICKNSSRIRVINLSVNYFSGTLSPGLGNCASLEHLCLGMND 216 (1020)
Q Consensus 138 L~L~~n~l~~~~p~~~-~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~ 216 (1020)
|+|++|++++.++..+ ++++|++|+|++|+++ .+|...+..+++|+.|+|++|++++..+..|..+++|++|+|++|.
T Consensus 81 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 81 LNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred EECCCCcCCccCHhHhcCccCCCEEEcCCCcCc-ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence 6666666666555554 5666666666666665 4444444555556666666666655444445555555555555555
Q ss_pred cccccchhhhhhcccccccccccccCCCCCcccccC
Q 035998 217 LTGGIADDIFQLQKLRLLGLQDNQLSGKLSPSIADL 252 (1020)
Q Consensus 217 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 252 (1020)
+.+. +++|++|+++.|+++|.+|..++.+
T Consensus 160 ~~~~-------~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 160 WDCT-------CPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp BCCC-------TTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred eecC-------CCCHHHHHHHHHhCCceeeccCccc
Confidence 5432 2345555555555555555544443
No 344
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=8.8e-25 Score=249.72 Aligned_cols=192 Identities=22% Similarity=0.335 Sum_probs=116.0
Q ss_pred ccCCCccEEEccCCcCcc----cCcccccCCcccceeecccccccccCCCCCc----CC---------cccccccccccc
Q 035998 250 ADLSNLVRLDVSSNNFSG----NIPDVFAGLGEFQYLVAHSNRFTGRIPHSLS----NS---------PTLNLLNLRNNS 312 (1020)
Q Consensus 250 ~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~----~l---------~~L~~L~L~~N~ 312 (1020)
..+++|++|+|++|.+++ .+|..+..+++|++|+|++|++++..+..+. .+ ++|++|+|++|+
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 344555555555555554 2444455555555555555555433222222 12 566666666666
Q ss_pred cc-cccc---cCCCCCCCcCEEEcCCCccC--C---CCCCCCCCCCCCCeEecCCCccc----ccCcccccCCCCCCeee
Q 035998 313 LD-GSLL---LNCPALTNLTSLDLGTNKFN--G---PLPTNLPRCRKLKNINLARNNFS----GQIPETYKNFESLSYLS 379 (1020)
Q Consensus 313 l~-~~~~---~~~~~l~~L~~L~L~~N~l~--~---~~p~~l~~l~~L~~L~L~~N~l~----~~~p~~~~~l~~L~~L~ 379 (1020)
++ +..+ ..+..+++|++|+|++|+|+ | ..|..+..+++|+.|+|++|.++ +.+|..+..+++|++|+
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 65 2222 23445566777777777666 2 33446666777777777777775 45666666777777777
Q ss_pred CCCCCCcchhhHHHHHhhhcccchhhhhccccCCCCCCCccccccCceEEEecccccccccchhhh--cCCCCcEEeccc
Q 035998 380 LSNSSIYNLSSALQVLQQCRNLTTLVLTLNFRNEKLPTDPRLHFANLKVLVIASCGLRGSIPQWLR--GCSKLQLVDLSW 457 (1020)
Q Consensus 380 l~~N~i~~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~--~l~~L~~L~Ls~ 457 (1020)
|++|.|+..... .+|..+. .+++|+.|+|++
T Consensus 251 L~~n~i~~~~~~-----------------------------------------------~l~~~l~~~~~~~L~~L~L~~ 283 (386)
T 2ca6_A 251 LNDCLLSARGAA-----------------------------------------------AVVDAFSKLENIGLQTLRLQY 283 (386)
T ss_dssp CTTCCCCHHHHH-----------------------------------------------HHHHHHHTCSSCCCCEEECCS
T ss_pred CCCCCCchhhHH-----------------------------------------------HHHHHHhhccCCCeEEEECcC
Confidence 777766543211 1344553 378888888888
Q ss_pred ccccc----cccccc-cCcCcCcEEeCCCCcccccC
Q 035998 458 NQLSG----TIPVWF-GGFQDLFYLDLSNNTFTGEI 488 (1020)
Q Consensus 458 N~l~~----~~p~~~-~~l~~L~~L~Ls~N~l~~~~ 488 (1020)
|++++ .+|..+ .++++|++|+|++|++++..
T Consensus 284 n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 284 NEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp SCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 88886 477777 66888999999999888554
No 345
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=7.9e-22 Score=210.62 Aligned_cols=178 Identities=22% Similarity=0.242 Sum_probs=88.6
Q ss_pred ccEEEccCCCCCCCCCCccccccccccccccccccccccchhhhhhcccccccccccccCCCCCcccccCCCccEEEccC
Q 035998 183 IRVINLSVNYFSGTLSPGLGNCASLEHLCLGMNDLTGGIADDIFQLQKLRLLGLQDNQLSGKLSPSIADLSNLVRLDVSS 262 (1020)
Q Consensus 183 L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 262 (1020)
.+.++++++.++ .+|..+. ++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++
T Consensus 16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 344444444444 3333332 3444555555555444444444444444444444444444444444455555555555
Q ss_pred CcCcccCcccccCCcccceeecccccccccCCCCCcCCcccccccccccccccccccCCCCCCCcCEEEcCCCccCCCCC
Q 035998 263 NNFSGNIPDVFAGLGEFQYLVAHSNRFTGRIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNKFNGPLP 342 (1020)
Q Consensus 263 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p 342 (1020)
|++++..+..|..++ +|++|+|++|++++..+..|..+++|++|+|++|+|++..+
T Consensus 93 n~l~~~~~~~~~~l~------------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 148 (251)
T 3m19_A 93 NQLASLPLGVFDHLT------------------------QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA 148 (251)
T ss_dssp SCCCCCCTTTTTTCT------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CcccccChhHhcccC------------------------CCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH
Confidence 555444444444444 44444444444444444444455555555555555554444
Q ss_pred CCCCCCCCCCeEecCCCcccccCcccccCCCCCCeeeCCCCCCcc
Q 035998 343 TNLPRCRKLKNINLARNNFSGQIPETYKNFESLSYLSLSNSSIYN 387 (1020)
Q Consensus 343 ~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~i~~ 387 (1020)
..|..+++|++|+|++|++++..+..|..+++|++|++++|++..
T Consensus 149 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 149 GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred HHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 455555555555555555555555555555566666666665543
No 346
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.87 E-value=1.9e-22 Score=226.69 Aligned_cols=201 Identities=13% Similarity=0.097 Sum_probs=102.3
Q ss_pred EEecCCCCCCCCCCccccCCCCCCeeeccCCCCCCCCCCcc-CCCCcceeeeccCccCCCCCccccccCCcccE-EEccC
Q 035998 113 FLNLSHNLLKGTVPVSLVNLPNLEVLDLSSNDLSGPLPQTI-NLPSIQVLDISSNSLNGSVPTSICKNSSRIRV-INLSV 190 (1020)
Q Consensus 113 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~-L~L~~ 190 (1020)
+++-++++++ .+|..+ .+++++|+|++|+|+.+++..+ ++++|++|+|++|++.+.+|...|.++++++. +.++.
T Consensus 13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 3444555555 455444 2355566666666655544444 45566666666665554555555555554443 44445
Q ss_pred CCCCCCCCCccccccccccccccccccccccchhhhhhcccccccccc-cccCCCCCcccccCC-CccEEEccCCcCccc
Q 035998 191 NYFSGTLSPGLGNCASLEHLCLGMNDLTGGIADDIFQLQKLRLLGLQD-NQLSGKLSPSIADLS-NLVRLDVSSNNFSGN 268 (1020)
Q Consensus 191 N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~ 268 (1020)
|+++...|..|.++++|++|++++|++++..+..+....++..|++.+ |+++...+..|..+. .++.|+|++|+|+.+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 555555555566666666666666666544444444444455555533 344433334444442 455555555555543
Q ss_pred CcccccCCcccceeecc-cccccccCCCCCcCCccccccccccccccccc
Q 035998 269 IPDVFAGLGEFQYLVAH-SNRFTGRIPHSLSNSPTLNLLNLRNNSLDGSL 317 (1020)
Q Consensus 269 ~p~~~~~l~~L~~L~L~-~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 317 (1020)
.+..|. ..+|+.|++. +|.++.+.+..|.++++|++|+|++|+|+..+
T Consensus 170 ~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp 218 (350)
T 4ay9_X 170 HNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 218 (350)
T ss_dssp CTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCC
T ss_pred Chhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccC
Confidence 333332 2345555554 24444333344555555555555555555433
No 347
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=5.2e-22 Score=218.71 Aligned_cols=214 Identities=22% Similarity=0.344 Sum_probs=152.1
Q ss_pred ccccccccccccccccccchhhhhhcccccccccccccCCCCCcccccCCCccEEEccCCcCcccCcccccCCcccceee
Q 035998 204 CASLEHLCLGMNDLTGGIADDIFQLQKLRLLGLQDNQLSGKLSPSIADLSNLVRLDVSSNNFSGNIPDVFAGLGEFQYLV 283 (1020)
Q Consensus 204 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 283 (1020)
+..+..+.+..+.+++.+ .+..+++|++|++++|+++. ++ .+..+++|++|+|++|++++..+ +..+++|++|+
T Consensus 18 l~~~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~ 91 (308)
T 1h6u_A 18 LANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELE 91 (308)
T ss_dssp HHHHHHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEE
T ss_pred HHHHHHHHhCCCCcCcee--cHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEE
Confidence 445566667777766433 34567888888888888874 44 57788888888888888886544 77888888888
Q ss_pred cccccccccCCCCCcCCcccccccccccccccccccCCCCCCCcCEEEcCCCccCCCCCCCCCCCCCCCeEecCCCcccc
Q 035998 284 AHSNRFTGRIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNKFNGPLPTNLPRCRKLKNINLARNNFSG 363 (1020)
Q Consensus 284 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 363 (1020)
+++|++++. ..+..+++|+.|++++|++++..+ +..+++|++|++++|++++..+ +..+++|+.|+|++|++++
T Consensus 92 L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~ 165 (308)
T 1h6u_A 92 LSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD 165 (308)
T ss_dssp CCSCCCSCC--GGGTTCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred ccCCcCCCc--hhhcCCCCCCEEECCCCCCCCchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC
Confidence 888887754 256777777777777777775432 6677777777777777775433 6677777777777777775
Q ss_pred cCcccccCCCCCCeeeCCCCCCcchhhHHHHHhhhcccchhhhhccccCCCCCCCccccccCceEEEecccccccccchh
Q 035998 364 QIPETYKNFESLSYLSLSNSSIYNLSSALQVLQQCRNLTTLVLTLNFRNEKLPTDPRLHFANLKVLVIASCGLRGSIPQW 443 (1020)
Q Consensus 364 ~~p~~~~~l~~L~~L~l~~N~i~~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~ 443 (1020)
..+ +..+++|+.|++++|+++.++ +
T Consensus 166 ~~~--l~~l~~L~~L~l~~n~l~~~~---------------------------------------------------~-- 190 (308)
T 1h6u_A 166 LTP--LANLSKLTTLKADDNKISDIS---------------------------------------------------P-- 190 (308)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCCCG---------------------------------------------------G--
T ss_pred Chh--hcCCCCCCEEECCCCccCcCh---------------------------------------------------h--
Confidence 333 667777777777777654432 1
Q ss_pred hhcCCCCcEEecccccccccccccccCcCcCcEEeCCCCcccc
Q 035998 444 LRGCSKLQLVDLSWNQLSGTIPVWFGGFQDLFYLDLSNNTFTG 486 (1020)
Q Consensus 444 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 486 (1020)
+..+++|+.|+|++|++++..| +..+++|++|+|++|++++
T Consensus 191 l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 191 LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 5667788888888888885543 7788888888888888874
No 348
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=1.9e-23 Score=234.04 Aligned_cols=250 Identities=20% Similarity=0.232 Sum_probs=142.9
Q ss_pred ccEEEccCCcCcccCcccccCC--cccceeecccccccccCCCCCcCCcccccccccccccccc-cccCCCCCCCcCEEE
Q 035998 255 LVRLDVSSNNFSGNIPDVFAGL--GEFQYLVAHSNRFTGRIPHSLSNSPTLNLLNLRNNSLDGS-LLLNCPALTNLTSLD 331 (1020)
Q Consensus 255 L~~L~Ls~N~l~~~~p~~~~~l--~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~ 331 (1020)
++.+++++|.+. +..+..+ ++++.|++++|.+++..+. +..+++|+.|++++|.+++. .+..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 566777777665 3445554 5666666666666655443 33455555555555555543 444444555555555
Q ss_pred cCCCccCCCCCCCCCCCCCCCeEecCCC-ccccc-CcccccCCCCCCeeeCCCC-CCcchhhHHHHHhhhcccchhhhhc
Q 035998 332 LGTNKFNGPLPTNLPRCRKLKNINLARN-NFSGQ-IPETYKNFESLSYLSLSNS-SIYNLSSALQVLQQCRNLTTLVLTL 408 (1020)
Q Consensus 332 L~~N~l~~~~p~~l~~l~~L~~L~L~~N-~l~~~-~p~~~~~l~~L~~L~l~~N-~i~~l~~~~~~l~~l~~L~~L~l~~ 408 (1020)
|++|++++..+..++.+++|++|+|++| .+++. ++..+..+++|++|++++| .++..
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~-------------------- 184 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK-------------------- 184 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH--------------------
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH--------------------
Confidence 5555555444444444555555555555 34431 3333444444555555444 33211
Q ss_pred cccCCCCCCCccccccCceEEEecccccccccchhhhcCC-CCcEEecccc--ccc-ccccccccCcCcCcEEeCCCCc-
Q 035998 409 NFRNEKLPTDPRLHFANLKVLVIASCGLRGSIPQWLRGCS-KLQLVDLSWN--QLS-GTIPVWFGGFQDLFYLDLSNNT- 483 (1020)
Q Consensus 409 n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~-~L~~L~Ls~N--~l~-~~~p~~~~~l~~L~~L~Ls~N~- 483 (1020)
.++..+..++ +|++|++++| .++ +.+|..+..+++|++|+|++|.
T Consensus 185 ------------------------------~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 234 (336)
T 2ast_B 185 ------------------------------HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM 234 (336)
T ss_dssp ------------------------------HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT
T ss_pred ------------------------------HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCc
Confidence 1334455566 6667777766 343 3455566666666666666666
Q ss_pred ccccCCCCCCCCcccccccCcCCCCCCCcccceeecccccccccccccCCCCeeecccCccccCCCccccCCCcceEEEe
Q 035998 484 FTGEIPKNLTGLPSLITRNISLEEPSPDFPFFMRRNVSARGLQYNQIWSFPPTIDLSLNRLDGSIWPEFGNLKKLHVFDL 563 (1020)
Q Consensus 484 l~~~~p~~~~~l~~L~~l~~s~~~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~l~Ls~N~l~~~~~~~~~~L~~L~~L~L 563 (1020)
+++. .+..++.+++|+.|+|
T Consensus 235 l~~~------------------------------------------------------------~~~~l~~l~~L~~L~l 254 (336)
T 2ast_B 235 LKND------------------------------------------------------------CFQEFFQLNYLQHLSL 254 (336)
T ss_dssp CCGG------------------------------------------------------------GGGGGGGCTTCCEEEC
T ss_pred CCHH------------------------------------------------------------HHHHHhCCCCCCEeeC
Confidence 4322 2334556677888888
Q ss_pred cCCc-ceeccCccccCCCcccEEEccCCcccccCCccccccc-cccccccccccccccCCC
Q 035998 564 KHNN-LSGPIPSELTGMTSLETLDLSYNNLSGAIPISLEKLS-FLSKFSVANNHLTGRIPS 622 (1020)
Q Consensus 564 s~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~-~L~~l~ls~N~l~g~~p~ 622 (1020)
++|. ++......++++++|+.|+|++| ++. ..+..+. .|..|++++|+++|..|.
T Consensus 255 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 255 SRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred CCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCC
Confidence 8885 32222235778888888888888 332 2455553 488888999999988875
No 349
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=1.1e-21 Score=216.25 Aligned_cols=194 Identities=25% Similarity=0.354 Sum_probs=107.9
Q ss_pred ccCCCCCcEEecCCCCCCCCCCccccCCCCCCeeeccCCCCCCCCCCccCCCCcceeeeccCccCCCCCccccccCCccc
Q 035998 105 LGNLVQLRFLNLSHNLLKGTVPVSLVNLPNLEVLDLSSNDLSGPLPQTINLPSIQVLDISSNSLNGSVPTSICKNSSRIR 184 (1020)
Q Consensus 105 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~ 184 (1020)
+.++++|++|++++|.++ .+| .+..+++|++|+|++|.+++..+ ...+++|++|+|++|++++ +| .+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~-~~--~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN-VS--AIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC-CG--GGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC-ch--hhcCCCCCC
Confidence 345677777777777777 344 57777777777777777776555 3367777777777777663 33 234455555
Q ss_pred EEEccCCCCCCCCCCccccccccccccccccccccccchhhhhhcccccccccccccCCCCCcccccCCCccEEEccCCc
Q 035998 185 VINLSVNYFSGTLSPGLGNCASLEHLCLGMNDLTGGIADDIFQLQKLRLLGLQDNQLSGKLSPSIADLSNLVRLDVSSNN 264 (1020)
Q Consensus 185 ~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 264 (1020)
.|+|++|++++. + .+..+++|++|+|++|++++..+ +..+++|++|+|++|++++. +. +..+++|++|++++|+
T Consensus 111 ~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 111 TLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNK 184 (308)
T ss_dssp EEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCc
Confidence 555555555542 2 25555555555555555553322 44445555555555555432 21 4444555555555555
Q ss_pred CcccCcccccCCcccceeecccccccccCCCCCcCCcccccccccccccccccccCCCCCCCcCEEEcCCCccC
Q 035998 265 FSGNIPDVFAGLGEFQYLVAHSNRFTGRIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNKFN 338 (1020)
Q Consensus 265 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 338 (1020)
++ +..+ +..+++|+.|++++|++++..+ +..+++|+.|+|++|+++
T Consensus 185 l~------------------------~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 185 IS------------------------DISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CC------------------------CCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred cC------------------------cChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence 44 3322 4445555555555555554432 455556666666666665
No 350
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.86 E-value=2.1e-22 Score=237.75 Aligned_cols=203 Identities=26% Similarity=0.325 Sum_probs=158.6
Q ss_pred CCCCC-----cCceE-EcCCCCCCCCCCCCCCCceEEEecCCCcccccccccccCCCCCcEEecCCCCCCCCCCccccCC
Q 035998 59 SSDCC-----HWVGI-TCNSSSSLGLNDSIGSGRVTGLFLYKRRLKGKLSESLGNLVQLRFLNLSHNLLKGTVPVSLVNL 132 (1020)
Q Consensus 59 ~~~~C-----~w~gv-~C~~~~~~~~~~~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 132 (1020)
+.++| .|.|+ .|.. ++++.|+|+++++++ +|..+. ++|++|+|++|+|+ .+| ..+
T Consensus 39 ~~~~~~~~~~~~~~l~~C~~------------~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l 99 (571)
T 3cvr_A 39 QALPGENRNEAVSLLKECLI------------NQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELP 99 (571)
T ss_dssp TCCTTCCHHHHHHHHHHHHH------------TTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCC
T ss_pred cCCccccccchhhhcccccc------------CCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---ccc
Confidence 34566 79999 7853 478899999999987 777664 88999999999999 788 557
Q ss_pred CCCCeeeccCCCCCCCCCCccCCCCcceeeeccCccCCCCCccccccCCcccEEEccCCCCCCCCCCccccccccccccc
Q 035998 133 PNLEVLDLSSNDLSGPLPQTINLPSIQVLDISSNSLNGSVPTSICKNSSRIRVINLSVNYFSGTLSPGLGNCASLEHLCL 212 (1020)
Q Consensus 133 ~~L~~L~L~~n~l~~~~p~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L 212 (1020)
++|++|+|++|+|++ +|...+ +|++|+|++|+|++ +|. .+++|+.|+|++|+|++ +|. .+++|++|+|
T Consensus 100 ~~L~~L~Ls~N~l~~-ip~l~~--~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 167 (571)
T 3cvr_A 100 ASLEYLDACDNRLST-LPELPA--SLKHLDVDNNQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSV 167 (571)
T ss_dssp TTCCEEECCSSCCSC-CCCCCT--TCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred CCCCEEEccCCCCCC-cchhhc--CCCEEECCCCcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEEC
Confidence 899999999999998 455224 89999999999985 776 47889999999999986 555 5678888899
Q ss_pred cccccccccchhhhhhcccccccccccccCCCCCcccccCCCc-------cEEEccCCcCcccCcccccCCcccceeecc
Q 035998 213 GMNDLTGGIADDIFQLQKLRLLGLQDNQLSGKLSPSIADLSNL-------VRLDVSSNNFSGNIPDVFAGLGEFQYLVAH 285 (1020)
Q Consensus 213 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-------~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 285 (1020)
++|+|++ +|. |. ++|+.|+|++|+|+ .+|. +.. +| ++|+|++|+|+ .+|..+..+++|+.|+++
T Consensus 168 s~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~ 238 (571)
T 3cvr_A 168 RNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILE 238 (571)
T ss_dssp CSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECC
T ss_pred CCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEee
Confidence 9998886 666 55 78888888888888 5555 554 66 88888888888 466666668888888888
Q ss_pred cccccccCCCCCcCCc
Q 035998 286 SNRFTGRIPHSLSNSP 301 (1020)
Q Consensus 286 ~N~l~~~~p~~~~~l~ 301 (1020)
+|++++.+|..+..++
T Consensus 239 ~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 239 DNPLSSRIRESLSQQT 254 (571)
T ss_dssp SSSCCHHHHHHHHHHH
T ss_pred CCcCCCcCHHHHHHhh
Confidence 8888877777665543
No 351
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=99.85 E-value=1.4e-21 Score=211.66 Aligned_cols=154 Identities=15% Similarity=0.121 Sum_probs=124.0
Q ss_pred cHHHHHHhccCCCcCCeeeccCCeEEEEEEeCCCCEEEEEEecCCch------------------hhHHHHHHHHHHHHH
Q 035998 733 SIDDILESTNNFDQANIIGCGGFGLVYRATLPDGRNVAIKRLSGDCG------------------QMEREFRAEVEALSR 794 (1020)
Q Consensus 733 ~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~------------------~~~~~~~~E~~~l~~ 794 (1020)
.+..+......|.+.+.||+|+||.||+|+..+|+.||||++..... .....+.+|++++++
T Consensus 81 ~l~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~ 160 (282)
T 1zar_A 81 SLHRLVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQK 160 (282)
T ss_dssp HHHHHHHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHh
Confidence 34555666777888899999999999999997799999999964321 134568899999999
Q ss_pred cCCCccceEeeEEeccCceEEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCC
Q 035998 795 AQHPNLVHLQGYCMHKNDRLLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSS 874 (1020)
Q Consensus 795 l~h~niv~l~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~ 874 (1020)
++ | +++.+++. .+..++||||++|++|.+ +.. .....++.|++.||+|||+. +|+||||||+
T Consensus 161 l~--~-~~v~~~~~-~~~~~lvmE~~~g~~L~~-l~~----------~~~~~i~~qi~~~l~~lH~~---giiHrDlkp~ 222 (282)
T 1zar_A 161 LQ--G-LAVPKVYA-WEGNAVLMELIDAKELYR-VRV----------ENPDEVLDMILEEVAKFYHR---GIVHGDLSQY 222 (282)
T ss_dssp TT--T-SSSCCEEE-EETTEEEEECCCCEEGGG-CCC----------SCHHHHHHHHHHHHHHHHHT---TEECSCCSTT
T ss_pred cc--C-CCcCeEEe-ccceEEEEEecCCCcHHH-cch----------hhHHHHHHHHHHHHHHHHHC---CCEeCCCCHH
Confidence 99 5 67777554 356699999999999987 321 12457999999999999999 9999999999
Q ss_pred CEEEcCCCCeEEeeccccccccCCCCcccccccccccCccCccccC
Q 035998 875 NILLDGNFGAHLADFGLARLILSPYDTHVTTDLVGTLGYIPPEYGQ 920 (1020)
Q Consensus 875 NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~ 920 (1020)
||+++ ++.+||+|||+++.. ..++|||++.
T Consensus 223 NILl~-~~~vkl~DFG~a~~~---------------~~~~a~e~l~ 252 (282)
T 1zar_A 223 NVLVS-EEGIWIIDFPQSVEV---------------GEEGWREILE 252 (282)
T ss_dssp SEEEE-TTEEEECCCTTCEET---------------TSTTHHHHHH
T ss_pred HEEEE-CCcEEEEECCCCeEC---------------CCCCHHHHHH
Confidence 99999 999999999998743 3567888753
No 352
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=1.4e-20 Score=222.18 Aligned_cols=197 Identities=25% Similarity=0.381 Sum_probs=129.3
Q ss_pred ccceeecccccccccCCCCCcCCcccccccccccccccccccCCCCCCCcCEEEcCCCccCCCCCCCCCCCCCCCeEecC
Q 035998 278 EFQYLVAHSNRFTGRIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNKFNGPLPTNLPRCRKLKNINLA 357 (1020)
Q Consensus 278 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 357 (1020)
+|+.|++++|++++ +|..+. ++|+.|+|++|+|+. +| ..+++|++|+|++|+|++ +|. +.. +|++|+|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 67777777777775 444442 566666666666663 33 335666666666666664 444 443 66666666
Q ss_pred CCcccccCcccccCCCCCCeeeCCCCCCcchhhHHHHHhhhcccchhhhhccccCCCCCCCccccccCceEEEecccccc
Q 035998 358 RNNFSGQIPETYKNFESLSYLSLSNSSIYNLSSALQVLQQCRNLTTLVLTLNFRNEKLPTDPRLHFANLKVLVIASCGLR 437 (1020)
Q Consensus 358 ~N~l~~~~p~~~~~l~~L~~L~l~~N~i~~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 437 (1020)
+|+|++ +|. .+++|++|++++|.|+.
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-------------------------------------------------- 154 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-------------------------------------------------- 154 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC--------------------------------------------------
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc--------------------------------------------------
Confidence 666665 343 45556666666555432
Q ss_pred cccchhhhcCCCCcEEecccccccccccccccCcCcCcEEeCCCCcccccCCCCCCCCcccccccCcCCCCCCCccccee
Q 035998 438 GSIPQWLRGCSKLQLVDLSWNQLSGTIPVWFGGFQDLFYLDLSNNTFTGEIPKNLTGLPSLITRNISLEEPSPDFPFFMR 517 (1020)
Q Consensus 438 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~s~~~~~~~~~~~~~ 517 (1020)
+|. .+++|+.|+|++|+|++ +|. |. ++|++|+|++|+|+ .+|. +.. +|
T Consensus 155 --lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L------------------- 202 (571)
T 3cvr_A 155 --LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RN------------------- 202 (571)
T ss_dssp --CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC------------------------
T ss_pred --CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hh-------------------
Confidence 222 34677788888888875 666 55 77888888888777 4444 322 11
Q ss_pred ecccccccccccccCCCCeeecccCccccCCCccccCCCcceEEEecCCcceeccCccccCCCcccEEEccCCcccccCC
Q 035998 518 RNVSARGLQYNQIWSFPPTIDLSLNRLDGSIWPEFGNLKKLHVFDLKHNNLSGPIPSELTGMTSLETLDLSYNNLSGAIP 597 (1020)
Q Consensus 518 ~~~~~~~l~~n~~~~~~~~l~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip 597 (1020)
+.....|+.|+|++|+|+ .+|..+..+++|+.|+|++|+|++.+|
T Consensus 203 ----------------------------------~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 203 ----------------------------------HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp ---------------------------------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred ----------------------------------hcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 112234699999999998 689999999999999999999999999
Q ss_pred ccccccccc
Q 035998 598 ISLEKLSFL 606 (1020)
Q Consensus 598 ~~l~~l~~L 606 (1020)
..+.+++..
T Consensus 248 ~~l~~l~~~ 256 (571)
T 3cvr_A 248 ESLSQQTAQ 256 (571)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHhhcC
Confidence 998887653
No 353
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=1.3e-20 Score=194.95 Aligned_cols=150 Identities=20% Similarity=0.245 Sum_probs=102.0
Q ss_pred cccccccccCCCCCcccccCCCccEEEccCCcCcccCcccccCCcccceeecccccccccCCCCCcCCcccccccccccc
Q 035998 233 LLGLQDNQLSGKLSPSIADLSNLVRLDVSSNNFSGNIPDVFAGLGEFQYLVAHSNRFTGRIPHSLSNSPTLNLLNLRNNS 312 (1020)
Q Consensus 233 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 312 (1020)
.++++++.++ .+|..+ .++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|+
T Consensus 11 ~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 11 TVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 4555555555 334333 2467777777777776666666677777777777777776666666677777777777777
Q ss_pred cccccccCCCCCCCcCEEEcCCCccCCCCCCCCCCCCCCCeEecCCCcccccCcccccCCCCCCeeeCCCCCC
Q 035998 313 LDGSLLLNCPALTNLTSLDLGTNKFNGPLPTNLPRCRKLKNINLARNNFSGQIPETYKNFESLSYLSLSNSSI 385 (1020)
Q Consensus 313 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~i 385 (1020)
+++..+..+..+++|++|+|++|+|++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|++
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe
Confidence 7766666667777777777777777766666677777777777777777766666677777777777777753
No 354
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.82 E-value=1.3e-19 Score=190.29 Aligned_cols=159 Identities=21% Similarity=0.261 Sum_probs=91.3
Q ss_pred CCCCCCCcCceEEcCCCCCCCCCCCCCCCceEEEecCCCcccccccccccCCCCCcEEecCCCCCCCCCCccccCCCCCC
Q 035998 57 ASSSDCCHWVGITCNSSSSLGLNDSIGSGRVTGLFLYKRRLKGKLSESLGNLVQLRFLNLSHNLLKGTVPVSLVNLPNLE 136 (1020)
Q Consensus 57 ~~~~~~C~w~gv~C~~~~~~~~~~~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 136 (1020)
+.+.+.|+|.+|.|+......+|...+ ..++.|+|++|.+++..|..+.++++|++|+|++|++++..+..|..+++|+
T Consensus 13 ~~~~~~Cs~~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~ 91 (229)
T 3e6j_A 13 CPSQCSCSGTTVDCRSKRHASVPAGIP-TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLT 91 (229)
T ss_dssp CCTTCEEETTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCCEEeCCEeEccCCCcCccCCCCC-CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcC
Confidence 456789999999999877666666544 4555556666655555555555555666666666555533334455555555
Q ss_pred eeeccCCCCCCCCCCcc-CCCCcceeeeccCccCCCCCccccccCCcccEEEccCCCCCCCCCCcccccccccccccccc
Q 035998 137 VLDLSSNDLSGPLPQTI-NLPSIQVLDISSNSLNGSVPTSICKNSSRIRVINLSVNYFSGTLSPGLGNCASLEHLCLGMN 215 (1020)
Q Consensus 137 ~L~L~~n~l~~~~p~~~-~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N 215 (1020)
+|+|++|+|++.++..+ .+++|++|+|++|+|+ .+|..+ ..+++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 92 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 92 VLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGI-ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTG-GGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred EEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCccc-ccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 56655555555555544 4555555555555555 444443 34455555555555555444444444555555555555
Q ss_pred ccc
Q 035998 216 DLT 218 (1020)
Q Consensus 216 ~l~ 218 (1020)
.+.
T Consensus 170 ~~~ 172 (229)
T 3e6j_A 170 PWD 172 (229)
T ss_dssp CBC
T ss_pred Ccc
Confidence 444
No 355
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=3e-19 Score=186.09 Aligned_cols=160 Identities=16% Similarity=0.234 Sum_probs=110.0
Q ss_pred CCCCCCCcCceEEcCCCCCCCCCCCCCCCceEEEecCCCcccccccccccCCCCCcEEecCCCCCCCCCCccccCCCCCC
Q 035998 57 ASSSDCCHWVGITCNSSSSLGLNDSIGSGRVTGLFLYKRRLKGKLSESLGNLVQLRFLNLSHNLLKGTVPVSLVNLPNLE 136 (1020)
Q Consensus 57 ~~~~~~C~w~gv~C~~~~~~~~~~~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 136 (1020)
++..+-|.|..|.|+....+.+|...+ ..++.|+|++|.+++..+..|..+++|++|+|++|++++..|..|.++++|+
T Consensus 5 CP~~C~C~~~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~ 83 (220)
T 2v9t_B 5 CPAACTCSNNIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLN 83 (220)
T ss_dssp SCTTSEEETTEEECTTSCCSSCCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCC
T ss_pred CCCCCEECCCEEEcCCCCcCcCCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCC
Confidence 556667999999999888777777655 4677777777777766666777777777777777777766677777777777
Q ss_pred eeeccCCCCCCCCCCcc-CCCCcceeeeccCccCCCCCccccccCCcccEEEccCCCCCCCCCCcccccccccccccccc
Q 035998 137 VLDLSSNDLSGPLPQTI-NLPSIQVLDISSNSLNGSVPTSICKNSSRIRVINLSVNYFSGTLSPGLGNCASLEHLCLGMN 215 (1020)
Q Consensus 137 ~L~L~~n~l~~~~p~~~-~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N 215 (1020)
+|+|++|+|+..++..+ ++++|++|+|++|+++ .++...+..+++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 84 ~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 84 SLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcCCccCHhHccCCCCCCEEECCCCCCC-EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 77777777776666555 5677777777777666 333334455666666666666666555555666666666666666
Q ss_pred ccc
Q 035998 216 DLT 218 (1020)
Q Consensus 216 ~l~ 218 (1020)
.+.
T Consensus 163 ~~~ 165 (220)
T 2v9t_B 163 PFI 165 (220)
T ss_dssp CEE
T ss_pred CcC
Confidence 654
No 356
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.80 E-value=2e-19 Score=214.85 Aligned_cols=172 Identities=24% Similarity=0.334 Sum_probs=118.5
Q ss_pred cccccccccccccccccccchhhhhhcccccccccccccCCCCCcccccCCCccEEEccCCcCcccCcccccCCccccee
Q 035998 203 NCASLEHLCLGMNDLTGGIADDIFQLQKLRLLGLQDNQLSGKLSPSIADLSNLVRLDVSSNNFSGNIPDVFAGLGEFQYL 282 (1020)
Q Consensus 203 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 282 (1020)
.+..+..+.+..+.++...+ +..+++|+.|++++|.++. ++ .+..+++|+.|+|++|+|++..| +..+++|+.|
T Consensus 19 ~l~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L 92 (605)
T 1m9s_A 19 AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWL 92 (605)
T ss_dssp HHHHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEE
T ss_pred HHHHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEE
Confidence 34556666777777765433 4677777777887777774 33 57777788888888887776554 7777777777
Q ss_pred ecccccccccCCCCCcCCcccccccccccccccccccCCCCCCCcCEEEcCCCccCCCCCCCCCCCCCCCeEecCCCccc
Q 035998 283 VAHSNRFTGRIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNKFNGPLPTNLPRCRKLKNINLARNNFS 362 (1020)
Q Consensus 283 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 362 (1020)
+|++|++++. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|+|++. ..+..+++|+.|+|++|+++
T Consensus 93 ~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~ 166 (605)
T 1m9s_A 93 FLDENKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 166 (605)
T ss_dssp ECCSSCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC
T ss_pred ECcCCCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC
Confidence 7777777752 2567777777777777777653 2466677777777777777754 45667777777777777777
Q ss_pred ccCcccccCCCCCCeeeCCCCCCcch
Q 035998 363 GQIPETYKNFESLSYLSLSNSSIYNL 388 (1020)
Q Consensus 363 ~~~p~~~~~l~~L~~L~l~~N~i~~l 388 (1020)
+..| +..+++|+.|+|++|+|..+
T Consensus 167 ~~~~--l~~l~~L~~L~Ls~N~i~~l 190 (605)
T 1m9s_A 167 DIVP--LAGLTKLQNLYLSKNHISDL 190 (605)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred Cchh--hccCCCCCEEECcCCCCCCC
Confidence 6555 67777777777777776554
No 357
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.80 E-value=1.1e-20 Score=231.80 Aligned_cols=271 Identities=15% Similarity=0.126 Sum_probs=98.6
Q ss_pred CCHHHHHHHHHHHHHhccC----CCCCCCCCCCCCCCcCceEEcCCCCCCCCCCCCCCCceEEEecCCCccccccccccc
Q 035998 31 CNPNDLAALEDFMKNFESG----IDGWGTNASSSDCCHWVGITCNSSSSLGLNDSIGSGRVTGLFLYKRRLKGKLSESLG 106 (1020)
Q Consensus 31 ~~~~~~~aL~~~k~~~~~~----~~~~~~~~~~~~~C~w~gv~C~~~~~~~~~~~~~~~~v~~l~l~~~~l~~~~~~~l~ 106 (1020)
....++++|.++..+.... ...|. ...+..+.|.++.++. ++++.|+|.++.+... +.
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~s~------------~~~~~l~L~~n~~~~~-~~--- 190 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQPT--GDSTPSGTATNSAVST------------PLTPKIELFANGKDEA-NQ--- 190 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCCCc--CCCCccccCCCceecC------------CccceEEeeCCCCCcc-hh---
Confidence 4567889999999887532 22232 2345567898888864 5788999988888763 33
Q ss_pred CCCCCcEEecCCCCCCCCCCccccCCCCCCeeeccCCCCCCCCCCcc-CCCCcceeeeccCccCCCCCccccccCCcccE
Q 035998 107 NLVQLRFLNLSHNLLKGTVPVSLVNLPNLEVLDLSSNDLSGPLPQTI-NLPSIQVLDISSNSLNGSVPTSICKNSSRIRV 185 (1020)
Q Consensus 107 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~ 185 (1020)
..|+.++|+.|.|.+. +++.|++. .+|..+ .+++|+.|+|++|.+. .+|..++ .+++|++
T Consensus 191 --~~l~~l~Ls~~~i~~~--------------~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~ 251 (727)
T 4b8c_D 191 --ALLQHKKLSQYSIDED--------------DDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIF-KYDFLTR 251 (727)
T ss_dssp ------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSC
T ss_pred --hHhhcCccCcccccCc--------------ccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhc-CCCCCCE
Confidence 2345555655555421 23333333 233333 4555555555555554 4444443 3444445
Q ss_pred EEccCCCCCCCCCCccccccccccccccccccccccchhhhhhcccccccccccccCCCCCcccccCCCccEEEccCCcC
Q 035998 186 INLSVNYFSGTLSPGLGNCASLEHLCLGMNDLTGGIADDIFQLQKLRLLGLQDNQLSGKLSPSIADLSNLVRLDVSSNNF 265 (1020)
Q Consensus 186 L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 265 (1020)
|+|++|.|+ .+|..|+++++|++|+|++|+|+ .+|..|+.+++|++|+|++|.|+ .+|..|+++++|++|+|++|.|
T Consensus 252 L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 252 LYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp CBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCC
T ss_pred EEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCcc
Confidence 555555554 45555666666666666666666 55666667777777777777776 5566677777777777777777
Q ss_pred cccCcccccCCcc-cceeecccccccccCCCCCcCCcccccccccccccccccccCCCCCCCcCEEEcCCCccCCCCCCC
Q 035998 266 SGNIPDVFAGLGE-FQYLVAHSNRFTGRIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNKFNGPLPTN 344 (1020)
Q Consensus 266 ~~~~p~~~~~l~~-L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~ 344 (1020)
++.+|..+..+.. +..++|++|.+++.+|.. |+.|++++|... . ...+.+.+..+..
T Consensus 329 ~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~---~-------------~~~~~l~~~~~~~ 386 (727)
T 4b8c_D 329 EKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEP---Q-------------REYDSLQQSTEHL 386 (727)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC------------------------------------------------
T ss_pred CCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeeccccc---c-------------cccCCccccccch
Confidence 7777766654422 223566666666655543 334444444110 0 0011333344445
Q ss_pred CCCCCCCCeEecCCCcccc
Q 035998 345 LPRCRKLKNINLARNNFSG 363 (1020)
Q Consensus 345 l~~l~~L~~L~L~~N~l~~ 363 (1020)
+..+.++....+++|-+.+
T Consensus 387 ~~~l~~~~~~~ls~Nil~~ 405 (727)
T 4b8c_D 387 ATDLAKRTFTVLSYNTLCQ 405 (727)
T ss_dssp ---------------CCCG
T ss_pred hhcccccceeeeecccccc
Confidence 5566666777777777653
No 358
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=3.5e-19 Score=212.87 Aligned_cols=174 Identities=24% Similarity=0.349 Sum_probs=94.0
Q ss_pred cCCCCCcEEecCCCCCCCCCCccccCCCCCCeeeccCCCCCCCCCCccCCCCcceeeeccCccCCCCCccccccCCcccE
Q 035998 106 GNLVQLRFLNLSHNLLKGTVPVSLVNLPNLEVLDLSSNDLSGPLPQTINLPSIQVLDISSNSLNGSVPTSICKNSSRIRV 185 (1020)
Q Consensus 106 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~ 185 (1020)
..|++|+.|++++|.++ .+| .|..+++|++|+|++|+|++.+| ...+++|++|+|++|.++
T Consensus 40 ~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~---------------- 100 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIK---------------- 100 (605)
T ss_dssp HHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCC----------------
T ss_pred hcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCC----------------
Confidence 44555555555555554 233 35555555555555555554443 224555555555555544
Q ss_pred EEccCCCCCCCCCCccccccccccccccccccccccchhhhhhcccccccccccccCCCCCcccccCCCccEEEccCCcC
Q 035998 186 INLSVNYFSGTLSPGLGNCASLEHLCLGMNDLTGGIADDIFQLQKLRLLGLQDNQLSGKLSPSIADLSNLVRLDVSSNNF 265 (1020)
Q Consensus 186 L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 265 (1020)
+ + +.+..+++|++|+|++|++++. ..+..+++|+.|+|++|+|++. ..+..+++|++|+|++|+|
T Consensus 101 ---------~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l 165 (605)
T 1m9s_A 101 ---------D-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQI 165 (605)
T ss_dssp ---------C-C-TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCC
T ss_pred ---------C-C-hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcC
Confidence 2 1 2455555555555555555532 2355555666666666666543 4555666666666666666
Q ss_pred cccCcccccCCcccceeecccccccccCCCCCcCCccccccccccccccccc
Q 035998 266 SGNIPDVFAGLGEFQYLVAHSNRFTGRIPHSLSNSPTLNLLNLRNNSLDGSL 317 (1020)
Q Consensus 266 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 317 (1020)
++..| +..+++|+.|+|++|+|++. ..+..+++|+.|+|++|.+.+..
T Consensus 166 ~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 166 SDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCC
T ss_pred CCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCc
Confidence 65444 55666666666666666543 24556666666666666665443
No 359
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=2e-19 Score=196.10 Aligned_cols=168 Identities=25% Similarity=0.328 Sum_probs=92.3
Q ss_pred ccccccccccccccccccchhhhhhcccccccccccccCCCCCcccccCCCccEEEccCCcCcccCcccccCCcccceee
Q 035998 204 CASLEHLCLGMNDLTGGIADDIFQLQKLRLLGLQDNQLSGKLSPSIADLSNLVRLDVSSNNFSGNIPDVFAGLGEFQYLV 283 (1020)
Q Consensus 204 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 283 (1020)
+..+..+.+..+.+++.. .+..+++|+.|++++|.++.. + .+..+++|++|++++|++++..+ +..+++|++|+
T Consensus 23 l~~~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~ 96 (291)
T 1h6t_A 23 FAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLF 96 (291)
T ss_dssp HHHHHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEE
Confidence 445556666666666432 245677777777777777643 3 46777777777777777775444 66666777777
Q ss_pred cccccccccCCCCCcCCcccccccccccccccccccCCCCCCCcCEEEcCCCccCCCCCCCCCCCCCCCeEecCCCcccc
Q 035998 284 AHSNRFTGRIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNKFNGPLPTNLPRCRKLKNINLARNNFSG 363 (1020)
Q Consensus 284 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 363 (1020)
+++|++++. ..+..+++|+.|++++|++++. ..+..+++|++|++++|++++. ..+..+++|+.|++++|++++
T Consensus 97 l~~n~l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~ 170 (291)
T 1h6t_A 97 LDENKVKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 170 (291)
T ss_dssp CCSSCCCCG--GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred CCCCcCCCC--hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc
Confidence 776666642 1245555555555555555432 2334444555555555554432 234444444444444444443
Q ss_pred cCcccccCCCCCCeeeCCCCCC
Q 035998 364 QIPETYKNFESLSYLSLSNSSI 385 (1020)
Q Consensus 364 ~~p~~~~~l~~L~~L~l~~N~i 385 (1020)
..| +..+++|++|++++|.|
T Consensus 171 ~~~--l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 171 IVP--LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp CGG--GTTCTTCCEEECCSSCC
T ss_pred chh--hcCCCccCEEECCCCcC
Confidence 322 44444444444444443
No 360
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=4.2e-19 Score=193.60 Aligned_cols=172 Identities=23% Similarity=0.346 Sum_probs=94.1
Q ss_pred cCCCCCcEEecCCCCCCCCCCccccCCCCCCeeeccCCCCCCCCCCccCCCCcceeeeccCccCCCCCccccccCCcccE
Q 035998 106 GNLVQLRFLNLSHNLLKGTVPVSLVNLPNLEVLDLSSNDLSGPLPQTINLPSIQVLDISSNSLNGSVPTSICKNSSRIRV 185 (1020)
Q Consensus 106 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~ 185 (1020)
..+++|++|++++|.++. +| .+..+++|++|+|++|++++..+ ..++++|++|+|++|++++ +|. +..+++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~--l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD-LSS--LKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-GGG--GTTCTTCCE
T ss_pred hhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC-Chh--hccCCCCCE
Confidence 456667777777776663 33 36666777777777777766554 2256666666666666652 222 234444444
Q ss_pred EEccCCCCCCCCCCccccccccccccccccccccccchhhhhhcccccccccccccCCCCCcccccCCCccEEEccCCcC
Q 035998 186 INLSVNYFSGTLSPGLGNCASLEHLCLGMNDLTGGIADDIFQLQKLRLLGLQDNQLSGKLSPSIADLSNLVRLDVSSNNF 265 (1020)
Q Consensus 186 L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 265 (1020)
|+|++|++++. ..+..+++|++|++++|++++. ..+..+++|++|++++|++
T Consensus 117 L~L~~n~i~~~--------------------------~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l 168 (291)
T 1h6t_A 117 LSLEHNGISDI--------------------------NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQI 168 (291)
T ss_dssp EECTTSCCCCC--------------------------GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred EECCCCcCCCC--------------------------hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcc
Confidence 44444444432 2344445555555555555432 3455555555555555555
Q ss_pred cccCcccccCCcccceeecccccccccCCCCCcCCccccccccccccccc
Q 035998 266 SGNIPDVFAGLGEFQYLVAHSNRFTGRIPHSLSNSPTLNLLNLRNNSLDG 315 (1020)
Q Consensus 266 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 315 (1020)
++..| +..+++|+.|++++|++++. + .+..+++|+.|++++|.++.
T Consensus 169 ~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 169 SDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred ccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 54333 55555555555555555543 2 25556666666666666654
No 361
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=1.1e-18 Score=181.90 Aligned_cols=153 Identities=15% Similarity=0.219 Sum_probs=122.7
Q ss_pred ccccccccccCCCCCcccccCCCccEEEccCCcCcccCcccccCCcccceeecccccccccCCCCCcCCccccccccccc
Q 035998 232 RLLGLQDNQLSGKLSPSIADLSNLVRLDVSSNNFSGNIPDVFAGLGEFQYLVAHSNRFTGRIPHSLSNSPTLNLLNLRNN 311 (1020)
Q Consensus 232 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 311 (1020)
+.+++++|+++ .+|..+. ++|++|+|++|+|++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 35566666666 4454443 57788888888888777777888888888888888888777888888888888888888
Q ss_pred ccccccccCCCCCCCcCEEEcCCCccCCCCCCCCCCCCCCCeEecCCCcccccCcccccCCCCCCeeeCCCCCCcc
Q 035998 312 SLDGSLLLNCPALTNLTSLDLGTNKFNGPLPTNLPRCRKLKNINLARNNFSGQIPETYKNFESLSYLSLSNSSIYN 387 (1020)
Q Consensus 312 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~i~~ 387 (1020)
+|+...+..|..+++|++|+|++|+|++..|..|..+++|+.|+|++|++++..+..|..+++|++|+|++|++..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 8887777778888888888888888888888888888889999999999888777788888899999999998754
No 362
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=181.31 Aligned_cols=161 Identities=19% Similarity=0.183 Sum_probs=100.4
Q ss_pred CCCCCCCcCceEEcCCCCCCCCCCCCCCCceEEEecCCCccccccc-ccccCCCCCcEEecCCCCCCCCCCccccCCCCC
Q 035998 57 ASSSDCCHWVGITCNSSSSLGLNDSIGSGRVTGLFLYKRRLKGKLS-ESLGNLVQLRFLNLSHNLLKGTVPVSLVNLPNL 135 (1020)
Q Consensus 57 ~~~~~~C~w~gv~C~~~~~~~~~~~~~~~~v~~l~l~~~~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 135 (1020)
++..+-|.|..|.|+....+.+|...+ ..++.|+|++|.+++..+ ..|.++++|++|+|++|.+++..|..|.++++|
T Consensus 5 CP~~C~C~~~~l~~s~n~l~~iP~~~~-~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L 83 (220)
T 2v70_A 5 CPEKCRCEGTTVDCSNQKLNKIPEHIP-QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV 83 (220)
T ss_dssp CCTTCEEETTEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred CCCCCEECCCEeEeCCCCcccCccCCC-CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC
Confidence 455667999999998877766666553 345666677666666544 345666666666666666665555566666666
Q ss_pred CeeeccCCCCCCCCCCcc-CCCCcceeeeccCccCCCCCccccccCCcccEEEccCCCCCCCCCCccccccccccccccc
Q 035998 136 EVLDLSSNDLSGPLPQTI-NLPSIQVLDISSNSLNGSVPTSICKNSSRIRVINLSVNYFSGTLSPGLGNCASLEHLCLGM 214 (1020)
Q Consensus 136 ~~L~L~~n~l~~~~p~~~-~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~ 214 (1020)
++|+|++|+|++.++..+ ++++|++|+|++|++++..|. .+..+++|++|+|++|++++..|..|..+++|++|+|++
T Consensus 84 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 84 NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGND-SFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTT-SSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHh-HcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecC
Confidence 666666666666666555 566666666666666633232 234455555555555555555555555555555555555
Q ss_pred ccccc
Q 035998 215 NDLTG 219 (1020)
Q Consensus 215 N~l~~ 219 (1020)
|.+.+
T Consensus 163 N~l~c 167 (220)
T 2v70_A 163 NPFNC 167 (220)
T ss_dssp CCEEC
T ss_pred cCCcC
Confidence 55553
No 363
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=8.5e-19 Score=197.70 Aligned_cols=184 Identities=24% Similarity=0.255 Sum_probs=114.8
Q ss_pred CCCCCCCcCceEEcCCCCCCCCCCCCCCCceEEEecCCCcccccccccccCCCCCcEEecCCCCCCCCCCcccc-CCCCC
Q 035998 57 ASSSDCCHWVGITCNSSSSLGLNDSIGSGRVTGLFLYKRRLKGKLSESLGNLVQLRFLNLSHNLLKGTVPVSLV-NLPNL 135 (1020)
Q Consensus 57 ~~~~~~C~w~gv~C~~~~~~~~~~~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L 135 (1020)
++..+-|.|..|.|+......+|...+ ..++.|+|++|+|++..+..|. ++++|
T Consensus 12 Cp~~C~C~~~~l~c~~~~l~~iP~~~~-------------------------~~l~~L~Ls~N~l~~l~~~~~~~~l~~L 66 (361)
T 2xot_A 12 CPANCLCASNILSCSKQQLPNVPQSLP-------------------------SYTALLDLSHNNLSRLRAEWTPTRLTNL 66 (361)
T ss_dssp CCTTCEEETTEEECCSSCCSSCCSSCC-------------------------TTCSEEECCSSCCCEECTTSSSSCCTTC
T ss_pred CCCCCEECCCEEEeCCCCcCccCccCC-------------------------CCCCEEECCCCCCCccChhhhhhccccc
Confidence 556666899999998766555554332 2345555555555544444444 55555
Q ss_pred CeeeccCCCCCCCCCCcc-CCCCcceeeeccCccCCCCCccccccCCcccEEEccCCCCCCCCCCccccccccccccccc
Q 035998 136 EVLDLSSNDLSGPLPQTI-NLPSIQVLDISSNSLNGSVPTSICKNSSRIRVINLSVNYFSGTLSPGLGNCASLEHLCLGM 214 (1020)
Q Consensus 136 ~~L~L~~n~l~~~~p~~~-~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~ 214 (1020)
++|+|++|+|++..+..+ ++++|++|+|++|+|+ .+|...+..+++|+.|+|++|+|++..|..|.++++|++|+|++
T Consensus 67 ~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 145 (361)
T 2xot_A 67 HSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ 145 (361)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCcCCccChhhccCCCCCCEEECCCCcCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCC
Confidence 555555555555555544 4555555555555555 44444455566666666666666666666677777777777777
Q ss_pred cccccccchhh---hhhcccccccccccccCCCCCcccccCCC--ccEEEccCCcCc
Q 035998 215 NDLTGGIADDI---FQLQKLRLLGLQDNQLSGKLSPSIADLSN--LVRLDVSSNNFS 266 (1020)
Q Consensus 215 N~l~~~~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~--L~~L~Ls~N~l~ 266 (1020)
|+|++..+..| ..+++|+.|+|++|+|++..+..+..++. |+.|+|++|.+.
T Consensus 146 N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 146 NQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp SCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 77775444434 45777778888888877655566777776 477888888776
No 364
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=1.6e-18 Score=180.65 Aligned_cols=153 Identities=18% Similarity=0.236 Sum_probs=117.7
Q ss_pred ccccccccccCCCCCcccccCCCccEEEccCCcCcccCc-ccccCCcccceeecccccccccCCCCCcCCcccccccccc
Q 035998 232 RLLGLQDNQLSGKLSPSIADLSNLVRLDVSSNNFSGNIP-DVFAGLGEFQYLVAHSNRFTGRIPHSLSNSPTLNLLNLRN 310 (1020)
Q Consensus 232 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 310 (1020)
+.+++++|.++ .+|..+. ..+++|+|++|+|++..| ..|..+++|++|++++|+|++..+..|.++++|++|+|++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 35666666666 3454443 345677777777776644 4577777778888888877777777788888888888888
Q ss_pred cccccccccCCCCCCCcCEEEcCCCccCCCCCCCCCCCCCCCeEecCCCcccccCcccccCCCCCCeeeCCCCCCcc
Q 035998 311 NSLDGSLLLNCPALTNLTSLDLGTNKFNGPLPTNLPRCRKLKNINLARNNFSGQIPETYKNFESLSYLSLSNSSIYN 387 (1020)
Q Consensus 311 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~i~~ 387 (1020)
|++++..+..|..+++|++|+|++|+|++..|..|..+++|++|+|++|++++..|..|..+++|++|+|++|++..
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 88887777778888888888888888888778888888888888888888888778888888888888888888764
No 365
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.76 E-value=1.3e-20 Score=223.96 Aligned_cols=203 Identities=15% Similarity=0.112 Sum_probs=160.2
Q ss_pred ccccccccccccccccccccchhhhhhcccccccccccccCCCCCcccccCCCccEEEccCCcCcccCcccccCCcccce
Q 035998 202 GNCASLEHLCLGMNDLTGGIADDIFQLQKLRLLGLQDNQLSGKLSPSIADLSNLVRLDVSSNNFSGNIPDVFAGLGEFQY 281 (1020)
Q Consensus 202 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 281 (1020)
..+++|+.|+|++|+++ .+|+.++.+++|+.|++++|......|.. +..+.+.+.+|..++.+++|+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~l-----------l~~~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILL-----------MRALDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHH-----------HHHHCTGGGHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHH-----------HHhcccccCCHHHHHHHHhccc
Confidence 56789999999999998 78999999999999999777531111111 1223455678888899999999
Q ss_pred ee-cccccccccCCCCCcCCcccccccccccccccccccCCCCCCCcCEEEcCCCccCCCCCCCCCCCCCCCeEecCCCc
Q 035998 282 LV-AHSNRFTGRIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNKFNGPLPTNLPRCRKLKNINLARNN 360 (1020)
Q Consensus 282 L~-L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~ 360 (1020)
|+ ++.|.+. .|+.+.+++|.++...+. .|+.|+|++|+|++ +|. ++.+++|+.|+|++|+
T Consensus 414 L~~l~~n~~~-----------~L~~l~l~~n~i~~l~~~------~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~ 474 (567)
T 1dce_A 414 VDPMRAAYLD-----------DLRSKFLLENSVLKMEYA------DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNR 474 (567)
T ss_dssp HCGGGHHHHH-----------HHHHHHHHHHHHHHHHHT------TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSC
T ss_pred Ccchhhcccc-----------hhhhhhhhcccccccCcc------CceEEEecCCCCCC-CcC-ccccccCcEeecCccc
Confidence 98 7777653 578888999998865542 48999999999995 676 9999999999999999
Q ss_pred ccccCcccccCCCCCCeeeCCCCCCcchhhHHHHHhhhcccchhhhhccccCCCCCCCccccccCceEEEeccccccccc
Q 035998 361 FSGQIPETYKNFESLSYLSLSNSSIYNLSSALQVLQQCRNLTTLVLTLNFRNEKLPTDPRLHFANLKVLVIASCGLRGSI 440 (1020)
Q Consensus 361 l~~~~p~~~~~l~~L~~L~l~~N~i~~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 440 (1020)
|+ .+|..|+.+++|++|+|++|+|+.+
T Consensus 475 l~-~lp~~~~~l~~L~~L~Ls~N~l~~l---------------------------------------------------- 501 (567)
T 1dce_A 475 LR-ALPPALAALRCLEVLQASDNALENV---------------------------------------------------- 501 (567)
T ss_dssp CC-CCCGGGGGCTTCCEEECCSSCCCCC----------------------------------------------------
T ss_pred cc-ccchhhhcCCCCCEEECCCCCCCCC----------------------------------------------------
Confidence 99 7899999999999999999986543
Q ss_pred chhhhcCCCCcEEecccccccccc-cccccCcCcCcEEeCCCCcccccCC
Q 035998 441 PQWLRGCSKLQLVDLSWNQLSGTI-PVWFGGFQDLFYLDLSNNTFTGEIP 489 (1020)
Q Consensus 441 p~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p 489 (1020)
| .++.+++|+.|+|++|+|++.. |..|+.+++|+.|+|++|++++.+|
T Consensus 502 p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 502 D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 3 4666777888888888887665 7788888888888888888876554
No 366
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=4.7e-19 Score=199.84 Aligned_cols=157 Identities=22% Similarity=0.179 Sum_probs=100.3
Q ss_pred cccccccccccCCCCCcccc-cCCCccEEEccCCcCcccCcccccCCcccceeecccccccccCCCCCcCCccccccccc
Q 035998 231 LRLLGLQDNQLSGKLSPSIA-DLSNLVRLDVSSNNFSGNIPDVFAGLGEFQYLVAHSNRFTGRIPHSLSNSPTLNLLNLR 309 (1020)
Q Consensus 231 L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 309 (1020)
++.|+|++|+|++..+..+. ++++|++|+|++|+|++..+..|.++++|++|+|++|+|++..+..|.++++|+.|+|+
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence 44555555555544444454 55666666666666665555566666666666666666666555666666666666666
Q ss_pred ccccccccccCCCCCCCcCEEEcCCCccCCCCCCCC---CCCCCCCeEecCCCcccccCcccccCCCC--CCeeeCCCCC
Q 035998 310 NNSLDGSLLLNCPALTNLTSLDLGTNKFNGPLPTNL---PRCRKLKNINLARNNFSGQIPETYKNFES--LSYLSLSNSS 384 (1020)
Q Consensus 310 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l---~~l~~L~~L~L~~N~l~~~~p~~~~~l~~--L~~L~l~~N~ 384 (1020)
+|+|++..+..|..+++|++|+|++|+|++..+..| ..+++|+.|+|++|+|++..+..+..++. |+.|+|++|+
T Consensus 121 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 666666666666777777777777777775444444 45777778888888777665566777766 3778888887
Q ss_pred Ccc
Q 035998 385 IYN 387 (1020)
Q Consensus 385 i~~ 387 (1020)
+..
T Consensus 201 ~~C 203 (361)
T 2xot_A 201 LEC 203 (361)
T ss_dssp EEC
T ss_pred ccC
Confidence 753
No 367
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.76 E-value=2.8e-20 Score=221.10 Aligned_cols=174 Identities=19% Similarity=0.172 Sum_probs=103.2
Q ss_pred ccCCcccEEEccCCCCCCCCCCccccccccccccccccccccccchhhhhhcccccccccccccCCCCCcccccCCCccE
Q 035998 178 KNSSRIRVINLSVNYFSGTLSPGLGNCASLEHLCLGMNDLTGGIADDIFQLQKLRLLGLQDNQLSGKLSPSIADLSNLVR 257 (1020)
Q Consensus 178 ~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 257 (1020)
...+.|+.|+|++|+++ .+|..++++++|++|++++|......|.. +..+.+.+..|..++.+++|+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~l-----------l~~~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILL-----------MRALDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHH-----------HHHHCTGGGHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHH-----------HHhcccccCCHHHHHHHHhccc
Confidence 45788999999999998 78999999999999999887521111100 0111122233444444444444
Q ss_pred EE-ccCCcCcccCcccccCCcccceeecccccccccCCCCCcCCcccccccccccccccccccCCCCCCCcCEEEcCCCc
Q 035998 258 LD-VSSNNFSGNIPDVFAGLGEFQYLVAHSNRFTGRIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNK 336 (1020)
Q Consensus 258 L~-Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 336 (1020)
|+ ++.|.+ .+|..+.+++|.++...+. .|+.|+|++|.|++. |. +..+++|+.|+|++|+
T Consensus 414 L~~l~~n~~-----------~~L~~l~l~~n~i~~l~~~------~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~ 474 (567)
T 1dce_A 414 VDPMRAAYL-----------DDLRSKFLLENSVLKMEYA------DVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNR 474 (567)
T ss_dssp HCGGGHHHH-----------HHHHHHHHHHHHHHHHHHT------TCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSC
T ss_pred Ccchhhccc-----------chhhhhhhhcccccccCcc------CceEEEecCCCCCCC-cC-ccccccCcEeecCccc
Confidence 44 333332 2334444455555433221 255566666666542 33 5566666666666666
Q ss_pred cCCCCCCCCCCCCCCCeEecCCCcccccCcccccCCCCCCeeeCCCCCC
Q 035998 337 FNGPLPTNLPRCRKLKNINLARNNFSGQIPETYKNFESLSYLSLSNSSI 385 (1020)
Q Consensus 337 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~i 385 (1020)
|+ .+|..++.+++|+.|+|++|+|++ +| .++.+++|++|+|++|+|
T Consensus 475 l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l 520 (567)
T 1dce_A 475 LR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRL 520 (567)
T ss_dssp CC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCC
T ss_pred cc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCC
Confidence 66 556666666666666666666664 44 566666666666666654
No 368
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=6.1e-18 Score=177.43 Aligned_cols=154 Identities=19% Similarity=0.203 Sum_probs=120.2
Q ss_pred cccccccccccCCCCCcccccCCCccEEEccCCcCcccCcccccCCcccceeecccccccccCCCCCcCCcccccccccc
Q 035998 231 LRLLGLQDNQLSGKLSPSIADLSNLVRLDVSSNNFSGNIPDVFAGLGEFQYLVAHSNRFTGRIPHSLSNSPTLNLLNLRN 310 (1020)
Q Consensus 231 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 310 (1020)
-+.++.++++++ .+|..+. ++|++|+|++|+|++..|..|.++++|++|+|++|+|+...+..|..+++|++|+|++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 345666666665 4444443 6777777777777777777777777777788877777766667777888888888888
Q ss_pred cccccccccCCCCCCCcCEEEcCCCccCCCCCCCCCCCCCCCeEecCCCcccccCcccccCCCCCCeeeCCCCCCcch
Q 035998 311 NSLDGSLLLNCPALTNLTSLDLGTNKFNGPLPTNLPRCRKLKNINLARNNFSGQIPETYKNFESLSYLSLSNSSIYNL 388 (1020)
Q Consensus 311 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~i~~l 388 (1020)
|+|++..+..|..+++|++|+|++|+|+ .+|..+..+++|+.|+|++|++++..+..|..+++|+.|++++|++..-
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 8888777777788888888888888888 7788888888999999999998877777788888999999999987643
No 369
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=4.2e-18 Score=182.61 Aligned_cols=167 Identities=20% Similarity=0.249 Sum_probs=101.5
Q ss_pred eEEEecCCCcccccccccccCCCCCcEEecCCCCCCCCCCccccCCCCCCeeeccCCCCCCCCCCccCCCCcceeeeccC
Q 035998 87 VTGLFLYKRRLKGKLSESLGNLVQLRFLNLSHNLLKGTVPVSLVNLPNLEVLDLSSNDLSGPLPQTINLPSIQVLDISSN 166 (1020)
Q Consensus 87 v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~l~~L~~L~Ls~N 166 (1020)
++.+++.++.+++.. .+..+++|++|++++|.++ .+| .+..+++|++|+|++|+|++..+ ...+++|++|+|++|
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC
Confidence 344555666665433 4666777777777777776 455 56677777777777777776555 336677777777777
Q ss_pred ccCCCCCccccccCCcccEEEccCCCCCCCCCCccccccccccccccccccccccchhhhhhcccccccccccccCCCCC
Q 035998 167 SLNGSVPTSICKNSSRIRVINLSVNYFSGTLSPGLGNCASLEHLCLGMNDLTGGIADDIFQLQKLRLLGLQDNQLSGKLS 246 (1020)
Q Consensus 167 ~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 246 (1020)
+++ .+|.... ++|+.|+|++|++++. +.++.+++|++|+|++|++++. + .+..+++|++|+|++|++++.
T Consensus 96 ~l~-~l~~~~~---~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-- 165 (263)
T 1xeu_A 96 RLK-NLNGIPS---ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-- 165 (263)
T ss_dssp CCS-CCTTCCC---SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--
T ss_pred ccC-CcCcccc---CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--
Confidence 776 3443221 5666666666666642 2456666666666666666643 2 455666666666666666644
Q ss_pred cccccCCCccEEEccCCcCccc
Q 035998 247 PSIADLSNLVRLDVSSNNFSGN 268 (1020)
Q Consensus 247 ~~~~~l~~L~~L~Ls~N~l~~~ 268 (1020)
..+..+++|++|++++|.+++.
T Consensus 166 ~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TTSTTCCCCCEEEEEEEEEECC
T ss_pred HHhccCCCCCEEeCCCCcccCC
Confidence 4555566666666666666544
No 370
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=3.5e-18 Score=183.27 Aligned_cols=172 Identities=21% Similarity=0.251 Sum_probs=138.3
Q ss_pred cccccccccccccccccccchhhhhhcccccccccccccCCCCCcccccCCCccEEEccCCcCcccCcccccCCccccee
Q 035998 203 NCASLEHLCLGMNDLTGGIADDIFQLQKLRLLGLQDNQLSGKLSPSIADLSNLVRLDVSSNNFSGNIPDVFAGLGEFQYL 282 (1020)
Q Consensus 203 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 282 (1020)
++.++..+++++|.+++. + .+..+++|++|++++|+++. ++ .+..+++|++|+|++|++++..+ +..+++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 567788888888888854 3 57888899999999998884 44 68888999999999999986655 8888899999
Q ss_pred ecccccccccCCCCCcCCcccccccccccccccccccCCCCCCCcCEEEcCCCccCCCCCCCCCCCCCCCeEecCCCccc
Q 035998 283 VAHSNRFTGRIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNKFNGPLPTNLPRCRKLKNINLARNNFS 362 (1020)
Q Consensus 283 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 362 (1020)
++++|++++..+ . .. ++|+.|++++|++++. ..+..+++|++|+|++|+|++. + .+..+++|+.|+|++|+++
T Consensus 91 ~L~~N~l~~l~~-~-~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 91 SVNRNRLKNLNG-I-PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECCSSCCSCCTT-C-CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCCcCc-c-cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence 999999886433 2 22 8888999999988864 2477888899999999998854 3 6888889999999999988
Q ss_pred ccCcccccCCCCCCeeeCCCCCCcchh
Q 035998 363 GQIPETYKNFESLSYLSLSNSSIYNLS 389 (1020)
Q Consensus 363 ~~~p~~~~~l~~L~~L~l~~N~i~~l~ 389 (1020)
+. ..+..+++|+.|++++|++...|
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred ch--HHhccCCCCCEEeCCCCcccCCc
Confidence 66 67888888889998888876554
No 371
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=99.73 E-value=6.6e-18 Score=180.55 Aligned_cols=144 Identities=19% Similarity=0.185 Sum_probs=110.3
Q ss_pred HHHHhccCCCcCCeeeccCCeEEEEEEe-CCCCE--EEEEEecCCchh------------------------hHHHHHHH
Q 035998 736 DILESTNNFDQANIIGCGGFGLVYRATL-PDGRN--VAIKRLSGDCGQ------------------------MEREFRAE 788 (1020)
Q Consensus 736 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~--vavK~~~~~~~~------------------------~~~~~~~E 788 (1020)
.+.....-|++.+.||+|+||.||+|.. .+|+. ||||+++..... ....+.+|
T Consensus 41 ~~~~~~~~~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E 120 (258)
T 1zth_A 41 KLSAKGYITAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKE 120 (258)
T ss_dssp HHHHTTSEEEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHH
T ss_pred HHHhCCCchhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHH
Confidence 3333444467889999999999999987 67888 999987543211 12357889
Q ss_pred HHHHHHcCCCcc--ceEeeEEeccCceEEEEEeccC-C----ChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhH-h
Q 035998 789 VEALSRAQHPNL--VHLQGYCMHKNDRLLIYSFMEN-G----SLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLH-Q 860 (1020)
Q Consensus 789 ~~~l~~l~h~ni--v~l~~~~~~~~~~~lv~e~~~~-g----~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH-~ 860 (1020)
++.++++.|+++ +.++++ ...++||||+.+ | +|.++... .++..+..++.|++.|++||| +
T Consensus 121 ~~~l~~l~~~~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~~~-------~~~~~~~~i~~qi~~~l~~lH~~ 189 (258)
T 1zth_A 121 FRNLERAKEAGVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELGRE-------LKELDVEGIFNDVVENVKRLYQE 189 (258)
T ss_dssp HHHHHHHHHTTCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHGGG-------GGGSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHhhc-------cChHHHHHHHHHHHHHHHHHHHH
Confidence 999999988864 333332 367899999953 4 66655432 123457889999999999999 8
Q ss_pred cCCCCeEecCCCCCCEEEcCCCCeEEeeccccccc
Q 035998 861 SCEPHILHRDIKSSNILLDGNFGAHLADFGLARLI 895 (1020)
Q Consensus 861 ~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~ 895 (1020)
. +|+||||||+|||++. .++|+|||+|...
T Consensus 190 ~---givHrDlkp~NILl~~--~~~liDFG~a~~~ 219 (258)
T 1zth_A 190 A---ELVHADLSEYNIMYID--KVYFIDMGQAVTL 219 (258)
T ss_dssp S---CEECSSCSTTSEEESS--SEEECCCTTCEET
T ss_pred C---CEEeCCCCHHHEEEcC--cEEEEECcccccC
Confidence 8 9999999999999998 9999999999765
No 372
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=1.1e-17 Score=171.10 Aligned_cols=156 Identities=19% Similarity=0.314 Sum_probs=134.0
Q ss_pred ccccccCceEEEecccccccccchhhhcCCCCcEEecccccccccccccccCcCcCcEEeCCCCcccccCCCCCCCCccc
Q 035998 419 PRLHFANLKVLVIASCGLRGSIPQWLRGCSKLQLVDLSWNQLSGTIPVWFGGFQDLFYLDLSNNTFTGEIPKNLTGLPSL 498 (1020)
Q Consensus 419 ~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 498 (1020)
....+++|+.|++++|.+. .+| .+..+++|++|++++|.++ . +..+..+++|++|+|++|++++..|..++.+++|
T Consensus 39 ~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 39 TEAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-N-YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp BHHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-C-CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred ChhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-c-chhhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 4467788999999999998 556 6999999999999999876 3 3478999999999999999998889999988877
Q ss_pred ccccCcCCCCCCCcccceeecccccccccccccCCCCeeecccCccccCCCccccCCCcceEEEecCCc-ceeccCcccc
Q 035998 499 ITRNISLEEPSPDFPFFMRRNVSARGLQYNQIWSFPPTIDLSLNRLDGSIWPEFGNLKKLHVFDLKHNN-LSGPIPSELT 577 (1020)
Q Consensus 499 ~~l~~s~~~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~l~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~p~~~~ 577 (1020)
+.|+|++|++++..|..|+.+++|++|+|++|+ ++ .+| .+.
T Consensus 115 ------------------------------------~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~ 156 (197)
T 4ezg_A 115 ------------------------------------TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLK 156 (197)
T ss_dssp ------------------------------------CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGG
T ss_pred ------------------------------------CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhc
Confidence 367889999998888999999999999999998 65 666 799
Q ss_pred CCCcccEEEccCCcccccCCccccccccccccccccccccc
Q 035998 578 GMTSLETLDLSYNNLSGAIPISLEKLSFLSKFSVANNHLTG 618 (1020)
Q Consensus 578 ~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g 618 (1020)
.+++|++|+|++|++++ +| .+..+++|+.|++++|++.+
T Consensus 157 ~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 157 TLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp GCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred CCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 99999999999999995 55 79999999999999999865
No 373
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=1.4e-18 Score=212.99 Aligned_cols=231 Identities=18% Similarity=0.192 Sum_probs=101.9
Q ss_pred CCCcEEecCCCCCCCCCCccccCCCCCCeeeccCCCCCCCCCCccCCCCcceeeeccCccCCCCCccccccCCcccEEEc
Q 035998 109 VQLRFLNLSHNLLKGTVPVSLVNLPNLEVLDLSSNDLSGPLPQTINLPSIQVLDISSNSLNGSVPTSICKNSSRIRVINL 188 (1020)
Q Consensus 109 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L 188 (1020)
+.++.|+|.+|.+.. +|. ..|+.++|+.|.|.+ ++++.|.+. +|...+..++.|+.|+|
T Consensus 173 ~~~~~l~L~~n~~~~-~~~-----~~l~~l~Ls~~~i~~-------------~~~~~n~~~--~~~~~~~~l~~L~~L~L 231 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQ-----ALLQHKKLSQYSIDE-------------DDDIENRMV--MPKDSKYDDQLWHALDL 231 (727)
T ss_dssp ----------------------------------------------------------------------CCCCCCEEEC
T ss_pred CccceEEeeCCCCCc-chh-----hHhhcCccCcccccC-------------cccccccee--cChhhhccCCCCcEEEC
Confidence 456777777777774 332 235666676666653 455566664 45555567777888888
Q ss_pred cCCCCCCCCCCccccccccccccccccccccccchhhhhhcccccccccccccCCCCCcccccCCCccEEEccCCcCccc
Q 035998 189 SVNYFSGTLSPGLGNCASLEHLCLGMNDLTGGIADDIFQLQKLRLLGLQDNQLSGKLSPSIADLSNLVRLDVSSNNFSGN 268 (1020)
Q Consensus 189 ~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 268 (1020)
++|.+. .+|..+.++++|++|+|++|.|+ .+|..|..+++|++|+|++|+|+ .+|..|+++++|++|+|++|.|+ .
T Consensus 232 s~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~ 307 (727)
T 4b8c_D 232 SNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-T 307 (727)
T ss_dssp TTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-C
T ss_pred CCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-c
Confidence 888877 66666667788888888888877 67777777788888888888877 66777777778888888888776 5
Q ss_pred CcccccCCcccceeecccccccccCCCCCcCCcc-cccccccccccccccccCCCCCCCcCEEEcCCCccCCCCCCCCCC
Q 035998 269 IPDVFAGLGEFQYLVAHSNRFTGRIPHSLSNSPT-LNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNKFNGPLPTNLPR 347 (1020)
Q Consensus 269 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 347 (1020)
+|..|+.+++|+.|+|++|+|++.+|..+..+.. +..|+|++|.+++.+|. .|+.|+++.|... -..+
T Consensus 308 lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~---~~~~-- 376 (727)
T 4b8c_D 308 LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEP---QREY-- 376 (727)
T ss_dssp CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------------------
T ss_pred cChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeeccccc---cccc--
Confidence 5666777777777777777777777766654422 23466777776655443 3445555555111 0111
Q ss_pred CCCCCeEecCCCcccccCcccccCCCCCCeeeCCCCCCc
Q 035998 348 CRKLKNINLARNNFSGQIPETYKNFESLSYLSLSNSSIY 386 (1020)
Q Consensus 348 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~i~ 386 (1020)
+.+.+..+..+..+..++...++.|-+.
T Consensus 377 -----------~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 377 -----------DSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp ------------------------------------CCC
T ss_pred -----------CCccccccchhhcccccceeeeeccccc
Confidence 1333344445556666677777777664
No 374
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=1.9e-18 Score=192.31 Aligned_cols=262 Identities=13% Similarity=0.100 Sum_probs=140.4
Q ss_pred CCCCcEEecCCCCCCCCCCccccC-CCCCCeeeccCCCCC--CCCCCccCCCCcceeeeccCccCCCCCcccccc-----
Q 035998 108 LVQLRFLNLSHNLLKGTVPVSLVN-LPNLEVLDLSSNDLS--GPLPQTINLPSIQVLDISSNSLNGSVPTSICKN----- 179 (1020)
Q Consensus 108 l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~--~~~p~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~----- 179 (1020)
+.+++.|.++++ +.+..-..+.. +++|++|||++|+|. ...+. .++.+..+.+..| .+|...|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~--~~~~~~~~~~~~~----~I~~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG--TYPNGKFYIYMAN----FVPAYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS--SSGGGCCEEECTT----EECTTTTEEEETTE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccc--ccccccccccccc----ccCHHHhccccccc
Confidence 667777777754 22111122333 677888888888877 22222 2233455555555 456666666
Q ss_pred ---CCcccEEEccCCCCCCCCCCccccccccccccccccccccccchhhhhhccccccccccc----ccCCCCCcccccC
Q 035998 180 ---SSRIRVINLSVNYFSGTLSPGLGNCASLEHLCLGMNDLTGGIADDIFQLQKLRLLGLQDN----QLSGKLSPSIADL 252 (1020)
Q Consensus 180 ---~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N----~l~~~~~~~~~~l 252 (1020)
+++|+.++|.+ .++.+.+.+|.++++|++|++++|.++...+.+|.++.++..+.+..+ ........+|.++
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 77777777777 777666667777778888888777777666677777666666666553 2233334556566
Q ss_pred CCcc-EEEccCCcC------------------------cccCcccc-cCCcccceeecccccccccCCCCCcCCcccccc
Q 035998 253 SNLV-RLDVSSNNF------------------------SGNIPDVF-AGLGEFQYLVAHSNRFTGRIPHSLSNSPTLNLL 306 (1020)
Q Consensus 253 ~~L~-~L~Ls~N~l------------------------~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 306 (1020)
.+|+ .+++....- .......+ ..+++|+.+++++|+++.+.+.+|.++++|+.|
T Consensus 176 ~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l 255 (329)
T 3sb4_A 176 EPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI 255 (329)
T ss_dssp CCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred cccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence 6665 444432210 00000000 113445555555555554444445555555555
Q ss_pred cccccccccccccCCCCCCCcC-EEEcCCCccCCCCCCCCCCCCCCCeEecCCCcccccCcccccCCCCCCeee
Q 035998 307 NLRNNSLDGSLLLNCPALTNLT-SLDLGTNKFNGPLPTNLPRCRKLKNINLARNNFSGQIPETYKNFESLSYLS 379 (1020)
Q Consensus 307 ~L~~N~l~~~~~~~~~~l~~L~-~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 379 (1020)
+|.+| ++.+....|.++++|+ .+++.+ +++...+.+|.++++|+.|++++|+++...+.+|.++++|+.++
T Consensus 256 ~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 256 KLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred ECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 55544 4444444455555555 555544 44434444555555555555555555544444555555555443
No 375
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=2.5e-17 Score=168.50 Aligned_cols=154 Identities=21% Similarity=0.287 Sum_probs=120.8
Q ss_pred hhhhcccccccccccccCCCCCcccccCCCccEEEccCCcCcccCcccccCCcccceeecccccccccCCCCCcCCcccc
Q 035998 225 IFQLQKLRLLGLQDNQLSGKLSPSIADLSNLVRLDVSSNNFSGNIPDVFAGLGEFQYLVAHSNRFTGRIPHSLSNSPTLN 304 (1020)
Q Consensus 225 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 304 (1020)
...+++|+.|++++|+++ .+| .+..+++|++|++++|.++. +..+..+++|++|++++|++++..+..++.+++|+
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 366778888888888887 455 67788888888888886652 34677888888888888888877788888888888
Q ss_pred cccccccccccccccCCCCCCCcCEEEcCCCc-cCCCCCCCCCCCCCCCeEecCCCcccccCcccccCCCCCCeeeCCCC
Q 035998 305 LLNLRNNSLDGSLLLNCPALTNLTSLDLGTNK-FNGPLPTNLPRCRKLKNINLARNNFSGQIPETYKNFESLSYLSLSNS 383 (1020)
Q Consensus 305 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N 383 (1020)
+|++++|.+++..+..+..+++|++|+|++|+ ++ .+| .+..+++|+.|++++|++++ ++ .+..+++|++|++++|
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCc
Confidence 88888888887777778888888888888887 55 455 58888888889998888885 33 6788888888888888
Q ss_pred CCc
Q 035998 384 SIY 386 (1020)
Q Consensus 384 ~i~ 386 (1020)
+|.
T Consensus 192 ~i~ 194 (197)
T 4ezg_A 192 TIG 194 (197)
T ss_dssp ---
T ss_pred ccC
Confidence 864
No 376
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=1.6e-17 Score=168.97 Aligned_cols=132 Identities=23% Similarity=0.334 Sum_probs=87.0
Q ss_pred eEEEecccccccccchhhhcCCCCcEEecccccccccccc-cccCcCcCcEEeCCCCcccccCCCCCCCCcccccccCcC
Q 035998 427 KVLVIASCGLRGSIPQWLRGCSKLQLVDLSWNQLSGTIPV-WFGGFQDLFYLDLSNNTFTGEIPKNLTGLPSLITRNISL 505 (1020)
Q Consensus 427 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~s~ 505 (1020)
+.+++++|++. .+|..+.. +|+.|+|++|+|++..+. .|+.+++|++|+|++|++++..|..|.++++|
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------- 80 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI------- 80 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC-------
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccC-------
Confidence 56677777664 44544432 677777777777655443 46777777777777777776666666666655
Q ss_pred CCCCCCcccceeecccccccccccccCCCCeeecccCccccCCCccccCCCcceEEEecCCcceeccCccccCCCcccEE
Q 035998 506 EEPSPDFPFFMRRNVSARGLQYNQIWSFPPTIDLSLNRLDGSIWPEFGNLKKLHVFDLKHNNLSGPIPSELTGMTSLETL 585 (1020)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~l~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 585 (1020)
+.|+|++|+|++..+..|+++++|+.|+|++|+|++..|..|..+++|++|
T Consensus 81 -----------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 131 (192)
T 1w8a_A 81 -----------------------------QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL 131 (192)
T ss_dssp -----------------------------CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEE
T ss_pred -----------------------------CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEE
Confidence 245666666666666666667777777777777766666667777777777
Q ss_pred EccCCcccccCC
Q 035998 586 DLSYNNLSGAIP 597 (1020)
Q Consensus 586 ~Ls~N~l~g~ip 597 (1020)
+|++|.+++..+
T Consensus 132 ~L~~N~l~c~c~ 143 (192)
T 1w8a_A 132 NLASNPFNCNCH 143 (192)
T ss_dssp ECTTCCBCCSGG
T ss_pred EeCCCCccCcCc
Confidence 777777766544
No 377
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=1.2e-16 Score=177.59 Aligned_cols=213 Identities=15% Similarity=0.098 Sum_probs=117.0
Q ss_pred CCCccEEEccCCcCc--ccCcccccCCcccceeecccccccccCCCCCcC--------CcccccccccccccccccccCC
Q 035998 252 LSNLVRLDVSSNNFS--GNIPDVFAGLGEFQYLVAHSNRFTGRIPHSLSN--------SPTLNLLNLRNNSLDGSLLLNC 321 (1020)
Q Consensus 252 l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~--------l~~L~~L~L~~N~l~~~~~~~~ 321 (1020)
+++|++|||++|+++ ...+..+ +.+..+.+..|. +.+.+|.+ +++|+.|+|.+ .++.+....|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~---I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF 120 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANF---VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAF 120 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTE---ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTT
T ss_pred hccCeEEecCcceeEEecCccccc---cccccccccccc---cCHHHhcccccccccccCCCcEEECCc-cccchhHHHh
Confidence 456666666666665 2222222 123333444442 23345555 77777777777 7776667777
Q ss_pred CCCCCcCEEEcCCCccCCCCCCCCCCCCCCCeEecCCCcc----cccCcccccCCCCCC-eeeCCCCCCcchhhHHHHHh
Q 035998 322 PALTNLTSLDLGTNKFNGPLPTNLPRCRKLKNINLARNNF----SGQIPETYKNFESLS-YLSLSNSSIYNLSSALQVLQ 396 (1020)
Q Consensus 322 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l----~~~~p~~~~~l~~L~-~L~l~~N~i~~l~~~~~~l~ 396 (1020)
.++++|+.|++++|.+....+.+|..+.++..+.+..+.. ......+|.++..|+ .+.+... ..++..+..
T Consensus 121 ~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~--~~l~~~~~~-- 196 (329)
T 3sb4_A 121 KGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAM--GKLEDEIMK-- 196 (329)
T ss_dssp TTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTT--CCHHHHHHH--
T ss_pred hcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCC--CcHHHHHhh--
Confidence 7778888888888877766677777777676666655322 222334455555555 4444332 123221100
Q ss_pred hhcccchhhhhccccCCCCCCCccccccCceEEEecccccccccchhhhcCCCCcEEecccccccccccccccCcCcCcE
Q 035998 397 QCRNLTTLVLTLNFRNEKLPTDPRLHFANLKVLVIASCGLRGSIPQWLRGCSKLQLVDLSWNQLSGTIPVWFGGFQDLFY 476 (1020)
Q Consensus 397 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 476 (1020)
. .....++..+.+.++-...........+++|+.|+|++|+++...+..|.++.+|+.
T Consensus 197 ~----------------------~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~ 254 (329)
T 3sb4_A 197 A----------------------GLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLK 254 (329)
T ss_dssp T----------------------TCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCE
T ss_pred c----------------------ccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCE
Confidence 0 001223444444433111111111123678888888888888555667888888888
Q ss_pred EeCCCCcccccCCCCCCCCccc
Q 035998 477 LDLSNNTFTGEIPKNLTGLPSL 498 (1020)
Q Consensus 477 L~Ls~N~l~~~~p~~~~~l~~L 498 (1020)
|+|++| ++...+..|.++++|
T Consensus 255 l~l~~n-i~~I~~~aF~~~~~L 275 (329)
T 3sb4_A 255 IKLPHN-LKTIGQRVFSNCGRL 275 (329)
T ss_dssp EECCTT-CCEECTTTTTTCTTC
T ss_pred EECCcc-cceehHHHhhCChhc
Confidence 888877 554444445555444
No 378
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=2.4e-16 Score=160.35 Aligned_cols=140 Identities=21% Similarity=0.270 Sum_probs=78.5
Q ss_pred CCCCCCCcCceEEcCCCCCCCCCCCCCCCceEEEecCCCcccccccccccCCCCCcEEecCCCCCCCCCCc-cccCCCCC
Q 035998 57 ASSSDCCHWVGITCNSSSSLGLNDSIGSGRVTGLFLYKRRLKGKLSESLGNLVQLRFLNLSHNLLKGTVPV-SLVNLPNL 135 (1020)
Q Consensus 57 ~~~~~~C~w~gv~C~~~~~~~~~~~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L 135 (1020)
++..+.|.|+.|.|+....+.+|...+. +|++|+|++|++++..+. .|+.+++|
T Consensus 2 CP~~C~C~~~~l~~s~~~l~~ip~~~~~-------------------------~l~~L~l~~n~i~~~~~~~~~~~l~~L 56 (192)
T 1w8a_A 2 CPAMCHCEGTTVDCTGRGLKEIPRDIPL-------------------------HTTELLLNDNELGRISSDGLFGRLPHL 56 (192)
T ss_dssp CCTTSEEETTEEECTTSCCSSCCSCCCT-------------------------TCSEEECCSCCCCSBCCSCSGGGCTTC
T ss_pred cCCCCEECCCEEEcCCCCcCcCccCCCC-------------------------CCCEEECCCCcCCccCCccccccCCCC
Confidence 3455668999999987665555544332 445555555555433332 24555555
Q ss_pred CeeeccCCCCCCCCCCcc-CCCCcceeeeccCccCCCCCccccccCCcccEEEccCCCCCCCCCCccccccccccccccc
Q 035998 136 EVLDLSSNDLSGPLPQTI-NLPSIQVLDISSNSLNGSVPTSICKNSSRIRVINLSVNYFSGTLSPGLGNCASLEHLCLGM 214 (1020)
Q Consensus 136 ~~L~L~~n~l~~~~p~~~-~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~ 214 (1020)
++|+|++|+|++.+|..+ ++++|++|+|++|+|+ .++...+..+++|++|+|++|++++..|..|..+++|++|+|++
T Consensus 57 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 57 VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp CEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCC-EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred CEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCC-ccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence 555555555555544444 4555555555555554 23333334455566666666666656666666667777777777
Q ss_pred cccccccc
Q 035998 215 NDLTGGIA 222 (1020)
Q Consensus 215 N~l~~~~~ 222 (1020)
|.+++..+
T Consensus 136 N~l~c~c~ 143 (192)
T 1w8a_A 136 NPFNCNCH 143 (192)
T ss_dssp CCBCCSGG
T ss_pred CCccCcCc
Confidence 77665443
No 379
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.65 E-value=6.7e-16 Score=154.94 Aligned_cols=139 Identities=21% Similarity=0.273 Sum_probs=87.4
Q ss_pred CCCCCCcCceEEcCCCCCCCCCCCCCCCceEEEecCCCcccccccccccCCCCCcEEecCCCCCCCCCCccccCCCCCCe
Q 035998 58 SSSDCCHWVGITCNSSSSLGLNDSIGSGRVTGLFLYKRRLKGKLSESLGNLVQLRFLNLSHNLLKGTVPVSLVNLPNLEV 137 (1020)
Q Consensus 58 ~~~~~C~w~gv~C~~~~~~~~~~~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 137 (1020)
+..+.|+|++|.|+....+.+|.... ++|++|++++|++++..+..|+.+++|++
T Consensus 2 p~~C~C~~~~l~~~~~~l~~~p~~~~-------------------------~~l~~L~l~~n~l~~~~~~~~~~l~~L~~ 56 (177)
T 2o6r_A 2 PSRCSCSGTEIRCNSKGLTSVPTGIP-------------------------SSATRLELESNKLQSLPHGVFDKLTQLTK 56 (177)
T ss_dssp CTTCEEETTEEECCSSCCSSCCTTCC-------------------------TTCSEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred cCCCEeCCCEEEecCCCCccCCCCCC-------------------------CCCcEEEeCCCcccEeCHHHhcCcccccE
Confidence 34566899999998765444443222 45666666666666544445566666666
Q ss_pred eeccCCCCCCCCCCcc-CCCCcceeeeccCccCCCCCccccccCCcccEEEccCCCCCCCCCCccccccccccccccccc
Q 035998 138 LDLSSNDLSGPLPQTI-NLPSIQVLDISSNSLNGSVPTSICKNSSRIRVINLSVNYFSGTLSPGLGNCASLEHLCLGMND 216 (1020)
Q Consensus 138 L~L~~n~l~~~~p~~~-~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~ 216 (1020)
|+|++|+|++.++..+ .+++|++|+|++|+++ .+|...+..+++|+.|+|++|++++..+..+..+++|++|+|++|.
T Consensus 57 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 57 LSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcceEeChhHccCCCccCEEECCCCCcc-ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 6666666665555554 5666666666666666 4444444556666666666666665555556677777777777777
Q ss_pred cccccc
Q 035998 217 LTGGIA 222 (1020)
Q Consensus 217 l~~~~~ 222 (1020)
+++..+
T Consensus 136 ~~~~~~ 141 (177)
T 2o6r_A 136 WDCSCP 141 (177)
T ss_dssp BCCCHH
T ss_pred eeccCc
Confidence 775443
No 380
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=6.2e-16 Score=153.72 Aligned_cols=135 Identities=22% Similarity=0.220 Sum_probs=106.9
Q ss_pred CCCcEEeccccccc-ccccccccCcCcCcEEeCCCCcccccCCCCCCCCcccccccCcCCCCCCCcccceeecccccccc
Q 035998 448 SKLQLVDLSWNQLS-GTIPVWFGGFQDLFYLDLSNNTFTGEIPKNLTGLPSLITRNISLEEPSPDFPFFMRRNVSARGLQ 526 (1020)
Q Consensus 448 ~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~s~~~~~~~~~~~~~~~~~~~~l~ 526 (1020)
++|+.|++++|+++ +.+|..+..+++|++|+|++|.+++. ..+..+++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L---------------------------- 73 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKL---------------------------- 73 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSC----------------------------
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCC----------------------------
Confidence 56778888888877 67777777788888888888887754 556666655
Q ss_pred cccccCCCCeeecccCccccCCCccccCCCcceEEEecCCcceec-cCccccCCCcccEEEccCCcccccCC---ccccc
Q 035998 527 YNQIWSFPPTIDLSLNRLDGSIWPEFGNLKKLHVFDLKHNNLSGP-IPSELTGMTSLETLDLSYNNLSGAIP---ISLEK 602 (1020)
Q Consensus 527 ~n~~~~~~~~l~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~g~ip---~~l~~ 602 (1020)
+.|+|++|++++.+|..++.+++|+.|+|++|++++. .+..++.+++|++|+|++|++++..+ ..+..
T Consensus 74 --------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 145 (168)
T 2ell_A 74 --------KKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKL 145 (168)
T ss_dssp --------CEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTT
T ss_pred --------CEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHh
Confidence 3567777777777777778899999999999999853 22789999999999999999996554 48999
Q ss_pred cccccccccccccccccC
Q 035998 603 LSFLSKFSVANNHLTGRI 620 (1020)
Q Consensus 603 l~~L~~l~ls~N~l~g~~ 620 (1020)
+++|++|++++|.+...+
T Consensus 146 l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 146 LPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp CSSCCEETTEETTSCBCC
T ss_pred CccCcEecCCCCChhhcc
Confidence 999999999999987543
No 381
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.62 E-value=2e-15 Score=153.52 Aligned_cols=136 Identities=25% Similarity=0.334 Sum_probs=85.4
Q ss_pred CCCCCCCcCceEEcCCCCCCCCCCCCCCCceEEEecCCCcccccccccccCCCCCcEEecCCCCCCCCCCccccCCCCCC
Q 035998 57 ASSSDCCHWVGITCNSSSSLGLNDSIGSGRVTGLFLYKRRLKGKLSESLGNLVQLRFLNLSHNLLKGTVPVSLVNLPNLE 136 (1020)
Q Consensus 57 ~~~~~~C~w~gv~C~~~~~~~~~~~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 136 (1020)
++..+.|.|..|.|+....+.+|...+ ++|++|+|++|+|+ .+|..|.++++|+
T Consensus 4 CP~~C~C~~~~l~~~~~~l~~ip~~~~-------------------------~~l~~L~L~~n~i~-~ip~~~~~l~~L~ 57 (193)
T 2wfh_A 4 CPTECTCLDTVVRCSNKGLKVLPKGIP-------------------------RDVTELYLDGNQFT-LVPKELSNYKHLT 57 (193)
T ss_dssp CCTTCEEETTEEECTTSCCSSCCSCCC-------------------------TTCCEEECCSSCCC-SCCGGGGGCTTCC
T ss_pred CCCCCEeCCCEEEcCCCCCCcCCCCCC-------------------------CCCCEEECCCCcCc-hhHHHhhcccCCC
Confidence 556677899999998765544443322 34566666666665 5555666666666
Q ss_pred eeeccCCCCCCCCCCcc-CCCCcceeeeccCccCCCCCccccccCCcccEEEccCCCCCCCCCCcccccccccccccccc
Q 035998 137 VLDLSSNDLSGPLPQTI-NLPSIQVLDISSNSLNGSVPTSICKNSSRIRVINLSVNYFSGTLSPGLGNCASLEHLCLGMN 215 (1020)
Q Consensus 137 ~L~L~~n~l~~~~p~~~-~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N 215 (1020)
+|+|++|+|++..+..+ ++++|++|+|++|+|+ .+|...+..+++|++|+|++|+|++..+..|..+++|++|+|++|
T Consensus 58 ~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~-~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 58 LIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcCCEeCHhHccCCCCCCEEECCCCccC-EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence 66666666666555555 5666666666666665 444444455666666666666666555556677777777777777
Q ss_pred cccc
Q 035998 216 DLTG 219 (1020)
Q Consensus 216 ~l~~ 219 (1020)
.+..
T Consensus 137 ~~~C 140 (193)
T 2wfh_A 137 PLYC 140 (193)
T ss_dssp CEEC
T ss_pred Ceec
Confidence 7763
No 382
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=5.2e-16 Score=150.88 Aligned_cols=128 Identities=21% Similarity=0.231 Sum_probs=102.9
Q ss_pred CCCcEEeccccccc-ccccccccCcCcCcEEeCCCCcccccCCCCCCCCcccccccCcCCCCCCCcccceeecccccccc
Q 035998 448 SKLQLVDLSWNQLS-GTIPVWFGGFQDLFYLDLSNNTFTGEIPKNLTGLPSLITRNISLEEPSPDFPFFMRRNVSARGLQ 526 (1020)
Q Consensus 448 ~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~s~~~~~~~~~~~~~~~~~~~~l~ 526 (1020)
++|+.|++++|+++ +.+|..+..+++|++|+|++|.+++. ..++++++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L---------------------------- 66 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKL---------------------------- 66 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTC----------------------------
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCC----------------------------
Confidence 56788888888887 67777778888888888888888754 556666655
Q ss_pred cccccCCCCeeecccCccccCCCccccCCCcceEEEecCCcceec-cCccccCCCcccEEEccCCcccccCC---ccccc
Q 035998 527 YNQIWSFPPTIDLSLNRLDGSIWPEFGNLKKLHVFDLKHNNLSGP-IPSELTGMTSLETLDLSYNNLSGAIP---ISLEK 602 (1020)
Q Consensus 527 ~n~~~~~~~~l~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~g~ip---~~l~~ 602 (1020)
+.|+|++|++++.+|..++.+++|++|+|++|++++. .|..++.+++|++|++++|++++..+ ..+..
T Consensus 67 --------~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 138 (149)
T 2je0_A 67 --------KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKL 138 (149)
T ss_dssp --------CEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHH
T ss_pred --------CEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHH
Confidence 3567777777777777788899999999999999863 45889999999999999999997665 57999
Q ss_pred ccccccccccc
Q 035998 603 LSFLSKFSVAN 613 (1020)
Q Consensus 603 l~~L~~l~ls~ 613 (1020)
+++|+.|++++
T Consensus 139 l~~L~~L~l~d 149 (149)
T 2je0_A 139 LPQLTYLDGYD 149 (149)
T ss_dssp CTTCCEETTBC
T ss_pred CCCcccccCCC
Confidence 99999999874
No 383
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=4.9e-16 Score=154.48 Aligned_cols=136 Identities=21% Similarity=0.264 Sum_probs=86.2
Q ss_pred CCccEEEccCCcCc-ccCcccccCCcccceeecccccccccCCCCCcCCcccccccccccccccccccCCCCCCCcCEEE
Q 035998 253 SNLVRLDVSSNNFS-GNIPDVFAGLGEFQYLVAHSNRFTGRIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLTSLD 331 (1020)
Q Consensus 253 ~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 331 (1020)
++|++|++++|.++ +.+|..+..+++|++|++++|++++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44555555555555 44555555555555555555555544 4555666666666666666655555555566777777
Q ss_pred cCCCccCCCC-CCCCCCCCCCCeEecCCCcccccCc---ccccCCCCCCeeeCCCCCCcchhh
Q 035998 332 LGTNKFNGPL-PTNLPRCRKLKNINLARNNFSGQIP---ETYKNFESLSYLSLSNSSIYNLSS 390 (1020)
Q Consensus 332 L~~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~l~~N~i~~l~~ 390 (1020)
|++|+|++.. +..+..+++|+.|++++|++++..+ ..+..+++|++|++++|.+..+|.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 7777776432 2566777777777777777775544 467777788888887777766654
No 384
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=99.61 E-value=2.1e-15 Score=166.63 Aligned_cols=150 Identities=10% Similarity=0.059 Sum_probs=107.9
Q ss_pred HHHHHHhccCCCcCCeeeccCCeEEEEEEeCCCCEEEEEEecCCch--------------h--------hHHHHHHHHHH
Q 035998 734 IDDILESTNNFDQANIIGCGGFGLVYRATLPDGRNVAIKRLSGDCG--------------Q--------MEREFRAEVEA 791 (1020)
Q Consensus 734 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~--------------~--------~~~~~~~E~~~ 791 (1020)
+..+.....-|++.+.||+|++|.||+|...+|+.||||+++.... . ......+|...
T Consensus 87 L~~L~~rg~iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~n 166 (397)
T 4gyi_A 87 LHTHAARKDVYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAF 166 (397)
T ss_dssp HHHHHHTTSCSEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCEEEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHH
Confidence 3444444556999999999999999999998999999998753210 0 00112456777
Q ss_pred HHHcCCCccceEeeEEeccCceEEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCC
Q 035998 792 LSRAQHPNLVHLQGYCMHKNDRLLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDI 871 (1020)
Q Consensus 792 l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dl 871 (1020)
+.++.+.++....-+.. ...++||||++|+.+..+... +....++.|++.+|.|||+. |||||||
T Consensus 167 L~rL~~~gv~vp~p~~~--~~~~LVME~i~G~~L~~l~~~----------~~~~~l~~qll~~l~~lH~~---gIVHrDL 231 (397)
T 4gyi_A 167 MKALYEEGFPVPEPIAQ--SRHTIVMSLVDALPMRQVSSV----------PDPASLYADLIALILRLAKH---GLIHGDF 231 (397)
T ss_dssp HHHHHHTTCSCCCEEEE--ETTEEEEECCSCEEGGGCCCC----------SCHHHHHHHHHHHHHHHHHT---TEECSCC
T ss_pred HHHHHhcCCCCCeeeec--cCceEEEEecCCccHhhhccc----------HHHHHHHHHHHHHHHHHHHC---CCcCCCC
Confidence 77775554432222211 234799999999887554321 13457889999999999999 9999999
Q ss_pred CCCCEEEcCCCC----------eEEeeccccccccCC
Q 035998 872 KSSNILLDGNFG----------AHLADFGLARLILSP 898 (1020)
Q Consensus 872 kp~NIll~~~~~----------~kl~Dfg~~~~~~~~ 898 (1020)
||.|||+++++. +.|+||+-+.....+
T Consensus 232 Kp~NILl~~dgd~~d~~~~~~~~~iID~~Q~V~~~hp 268 (397)
T 4gyi_A 232 NEFNILIREEKDAEDPSSITLTPIIIXFPQMVSMDHP 268 (397)
T ss_dssp STTSEEEEEEECSSCTTSEEEEEEECCCTTCEETTST
T ss_pred CHHHEEEeCCCCcccccccccceEEEEeCCcccCCCC
Confidence 999999987763 899999988765443
No 385
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.60 E-value=9.7e-15 Score=165.78 Aligned_cols=267 Identities=13% Similarity=0.135 Sum_probs=206.3
Q ss_pred CCCCcEEecCCCCCCCCCCccccCCCCCCeeeccCCCCCCCCCCccCCCCcceeeeccCccCCCCCccccccCCcccEEE
Q 035998 108 LVQLRFLNLSHNLLKGTVPVSLVNLPNLEVLDLSSNDLSGPLPQTINLPSIQVLDISSNSLNGSVPTSICKNSSRIRVIN 187 (1020)
Q Consensus 108 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~ 187 (1020)
...++.+.+.+ .++..-..+|.++ +|+.+++..| ++.+....|.-.+|+.+.|.. .++ .|+...|.++++|+.++
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLE-QLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCC-EECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-Ccc-EehHHHhhCcccCCeee
Confidence 46677777754 4554555667775 7888888766 776667777435788888875 565 67777788888888888
Q ss_pred ccCCCCCCCCCCccccccccccccccccccccccchhhhhhcccccccccccccCCCCCcccccCCCccEEEccCCcCcc
Q 035998 188 LSVNYFSGTLSPGLGNCASLEHLCLGMNDLTGGIADDIFQLQKLRLLGLQDNQLSGKLSPSIADLSNLVRLDVSSNNFSG 267 (1020)
Q Consensus 188 L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 267 (1020)
|+.|+++......|. .++|+.+.|.++ ++.....+|.++++|+.+++.+| ++.+...+|.+ .+|+.+++ .|.++.
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~ 261 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTN 261 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCE
T ss_pred cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccE
Confidence 888888866666666 588888888744 77667778888888888888875 55566677777 78888888 456776
Q ss_pred cCcccccCCcccceeeccccccc-----ccCCCCCcCCcccccccccccccccccccCCCCCCCcCEEEcCCCccCCCCC
Q 035998 268 NIPDVFAGLGEFQYLVAHSNRFT-----GRIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNKFNGPLP 342 (1020)
Q Consensus 268 ~~p~~~~~l~~L~~L~L~~N~l~-----~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p 342 (1020)
+...+|.++++|+.+.+.+|.+. .+.+.+|.++++|+.++|. +.++.+....|.++++|+.++|..| ++...+
T Consensus 262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~ 339 (401)
T 4fdw_A 262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINF 339 (401)
T ss_dssp ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECT
T ss_pred EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcH
Confidence 77888888899999988887765 5667788999999999998 4577777888989999999999655 766777
Q ss_pred CCCCCCCCCCeEecCCCcccccCcccccCCC-CCCeeeCCCCCCcc
Q 035998 343 TNLPRCRKLKNINLARNNFSGQIPETYKNFE-SLSYLSLSNSSIYN 387 (1020)
Q Consensus 343 ~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~l~~N~i~~ 387 (1020)
.+|.++ +|+.+++++|.+....+..|.+++ +++.|++..+.+..
T Consensus 340 ~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~~ 384 (401)
T 4fdw_A 340 SAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVEK 384 (401)
T ss_dssp TSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHHH
T ss_pred HhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHHH
Confidence 889888 999999999988877777888874 78888888776443
No 386
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.60 E-value=1e-14 Score=165.53 Aligned_cols=254 Identities=12% Similarity=0.101 Sum_probs=214.7
Q ss_pred cccccccccccCCCCCcEEecCCCCCCCCCCccccCCCCCCeeeccCCCCCCCCCCcc-CCCCcceeeeccCccCCCCCc
Q 035998 96 RLKGKLSESLGNLVQLRFLNLSHNLLKGTVPVSLVNLPNLEVLDLSSNDLSGPLPQTI-NLPSIQVLDISSNSLNGSVPT 174 (1020)
Q Consensus 96 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-~l~~L~~L~Ls~N~l~~~ip~ 174 (1020)
.++..-..+|.+. +|+.+.|..+ ++..-..+|.++ +|+.+++.. .++.+.+..| ++++|+.++|++|+++ .+|.
T Consensus 123 ~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~ 197 (401)
T 4fdw_A 123 SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPA 197 (401)
T ss_dssp TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECT
T ss_pred ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-Eech
Confidence 4444445677774 7999999876 775566678884 799999986 7887778888 8999999999999998 8888
Q ss_pred cccccCCcccEEEccCCCCCCCCCCccccccccccccccccccccccchhhhhhcccccccccccccCCCCCcccccCCC
Q 035998 175 SICKNSSRIRVINLSVNYFSGTLSPGLGNCASLEHLCLGMNDLTGGIADDIFQLQKLRLLGLQDNQLSGKLSPSIADLSN 254 (1020)
Q Consensus 175 ~~~~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 254 (1020)
..|. .++|+.+.|..+ +......+|.++++|+.++|.+| ++.....+|.+ .+|+.+.+ .|.++.+...+|.++++
T Consensus 198 ~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~ 272 (401)
T 4fdw_A 198 STFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPE 272 (401)
T ss_dssp TTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTT
T ss_pred hhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCC
Confidence 8887 589999999854 77778889999999999999985 66555666766 89999999 56677677889999999
Q ss_pred ccEEEccCCcCc-----ccCcccccCCcccceeecccccccccCCCCCcCCcccccccccccccccccccCCCCCCCcCE
Q 035998 255 LVRLDVSSNNFS-----GNIPDVFAGLGEFQYLVAHSNRFTGRIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLTS 329 (1020)
Q Consensus 255 L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 329 (1020)
|+.+++.+|.+. .+.+.+|.++++|+.+.+. +.++.+...+|.++++|+.++|.+| ++.+....|.++ +|+.
T Consensus 273 L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~ 349 (401)
T 4fdw_A 273 LAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKE 349 (401)
T ss_dssp CCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCE
T ss_pred CCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCE
Confidence 999999998876 5677899999999999999 5588888899999999999999665 777788899999 9999
Q ss_pred EEcCCCccCCCCCCCCCCCC-CCCeEecCCCccc
Q 035998 330 LDLGTNKFNGPLPTNLPRCR-KLKNINLARNNFS 362 (1020)
Q Consensus 330 L~L~~N~l~~~~p~~l~~l~-~L~~L~L~~N~l~ 362 (1020)
+++++|.+....+..|.+++ +++.|++..+.+.
T Consensus 350 l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 350 VKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp EEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred EEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 99999999877788888884 7899999888764
No 387
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.58 E-value=5.5e-15 Score=150.21 Aligned_cols=126 Identities=20% Similarity=0.341 Sum_probs=61.7
Q ss_pred cccccccccCCCCCcccccCCCccEEEccCCcCcccCcccccCCcccceeecccccccccCCCCCcCCcccccccccccc
Q 035998 233 LLGLQDNQLSGKLSPSIADLSNLVRLDVSSNNFSGNIPDVFAGLGEFQYLVAHSNRFTGRIPHSLSNSPTLNLLNLRNNS 312 (1020)
Q Consensus 233 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 312 (1020)
++++++|+++ .+|..+. ++|++|+|++|+|+ .+|..|.++++|++|+|++|+|++..+..|.
T Consensus 14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~-------------- 75 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFS-------------- 75 (193)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTT--------------
T ss_pred EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHcc--------------
Confidence 3445555554 3333332 35555555555555 3344455454455554444444444444444
Q ss_pred cccccccCCCCCCCcCEEEcCCCccCCCCCCCCCCCCCCCeEecCCCcccccCcccccCCCCCCeeeCCCCCCc
Q 035998 313 LDGSLLLNCPALTNLTSLDLGTNKFNGPLPTNLPRCRKLKNINLARNNFSGQIPETYKNFESLSYLSLSNSSIY 386 (1020)
Q Consensus 313 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~i~ 386 (1020)
.+++|++|+|++|+|++..|..|..+++|+.|+|++|+|+...+..|..+++|++|+|++|++.
T Consensus 76 ----------~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 76 ----------NMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp ----------TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ----------CCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 4444444444444444444444555555555555555555444444555555555555555543
No 388
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=3.9e-15 Score=144.65 Aligned_cols=129 Identities=26% Similarity=0.271 Sum_probs=82.4
Q ss_pred cccccccccccccc-cccccCCCCCCCcCEEEcCCCccCCCCCCCCCCCCCCCeEecCCCcccccCcccccCCCCCCeee
Q 035998 301 PTLNLLNLRNNSLD-GSLLLNCPALTNLTSLDLGTNKFNGPLPTNLPRCRKLKNINLARNNFSGQIPETYKNFESLSYLS 379 (1020)
Q Consensus 301 ~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 379 (1020)
++|+.|++++|.++ +.+|..+..+++|++|++++|++++. ..+..+++|++|++++|++++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45566666666665 45555556666666666666666644 5566666677777777776665666666666666666
Q ss_pred CCCCCCcchhhHHHHHhhhcccchhhhhccccCCCCCCCccccccCceEEEecccccccccchhhhcCCCCcEEeccccc
Q 035998 380 LSNSSIYNLSSALQVLQQCRNLTTLVLTLNFRNEKLPTDPRLHFANLKVLVIASCGLRGSIPQWLRGCSKLQLVDLSWNQ 459 (1020)
Q Consensus 380 l~~N~i~~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 459 (1020)
+++|+++.++. |..++.+++|++|++++|+
T Consensus 95 ls~N~i~~~~~--------------------------------------------------~~~~~~l~~L~~L~l~~N~ 124 (149)
T 2je0_A 95 LSGNKIKDLST--------------------------------------------------IEPLKKLENLKSLDLFNCE 124 (149)
T ss_dssp CTTSCCCSHHH--------------------------------------------------HGGGGGCTTCCEEECTTCG
T ss_pred CCCCcCCChHH--------------------------------------------------HHHHhhCCCCCEEeCcCCc
Confidence 66666554321 2345667777777777777
Q ss_pred cccccc---ccccCcCcCcEEeCCC
Q 035998 460 LSGTIP---VWFGGFQDLFYLDLSN 481 (1020)
Q Consensus 460 l~~~~p---~~~~~l~~L~~L~Ls~ 481 (1020)
+++..+ ..+..+++|++||+++
T Consensus 125 l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 125 VTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ccchHHHHHHHHHHCCCcccccCCC
Confidence 775544 4677777777777763
No 389
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.57 E-value=1.8e-14 Score=144.47 Aligned_cols=114 Identities=19% Similarity=0.145 Sum_probs=73.7
Q ss_pred ccceeecccccccccCCCCCcCCcccccccccccccccccccCCCCCCCcCEEEcCCCccCCCCCCCCCCCCCCCeEecC
Q 035998 278 EFQYLVAHSNRFTGRIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNKFNGPLPTNLPRCRKLKNINLA 357 (1020)
Q Consensus 278 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 357 (1020)
+|+.|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|+|++|+|++..+..+..+++|++|+|+
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 44555555555554444455555666666666666665555556666777777777777776666666777777777777
Q ss_pred CCcccccCcccccCCCCCCeeeCCCCCCcchhhH
Q 035998 358 RNNFSGQIPETYKNFESLSYLSLSNSSIYNLSSA 391 (1020)
Q Consensus 358 ~N~l~~~~p~~~~~l~~L~~L~l~~N~i~~l~~~ 391 (1020)
+|++++..+..|..+++|++|++++|++......
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 142 (177)
T 2o6r_A 109 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 142 (177)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred CCcceEeCHHHhcCCcccCEEEecCCCeeccCcc
Confidence 7777765555667777777777777777654443
No 390
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=1.1e-14 Score=145.76 Aligned_cols=135 Identities=19% Similarity=0.138 Sum_probs=105.6
Q ss_pred hhcCCCCcEEecccccccccccccccCcC-cCcEEeCCCCcccccCCCCCCCCcccccccCcCCCCCCCcccceeecccc
Q 035998 444 LRGCSKLQLVDLSWNQLSGTIPVWFGGFQ-DLFYLDLSNNTFTGEIPKNLTGLPSLITRNISLEEPSPDFPFFMRRNVSA 522 (1020)
Q Consensus 444 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~s~~~~~~~~~~~~~~~~~~ 522 (1020)
+..+.+|+.|++++|+++ .+|. +..+. +|++|+|++|.+++. ..++.+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L------------------------ 66 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRL------------------------ 66 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSC------------------------
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCC------------------------
Confidence 455677888888888887 4454 44444 888888888888754 456666655
Q ss_pred cccccccccCCCCeeecccCccccCCCccccCCCcceEEEecCCcceeccCc--cccCCCcccEEEccCCcccccCCcc-
Q 035998 523 RGLQYNQIWSFPPTIDLSLNRLDGSIWPEFGNLKKLHVFDLKHNNLSGPIPS--ELTGMTSLETLDLSYNNLSGAIPIS- 599 (1020)
Q Consensus 523 ~~l~~n~~~~~~~~l~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~g~ip~~- 599 (1020)
+.|+|++|+|++..+..|+.+++|+.|+|++|+|+ .+|. .++.+++|+.|+|++|+++ .+|..
T Consensus 67 ------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~ 132 (176)
T 1a9n_A 67 ------------KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYR 132 (176)
T ss_dssp ------------CEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHH
T ss_pred ------------CEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHH
Confidence 35677778877655555689999999999999996 6776 8999999999999999998 67775
Q ss_pred ---ccccccccccccccccccccC
Q 035998 600 ---LEKLSFLSKFSVANNHLTGRI 620 (1020)
Q Consensus 600 ---l~~l~~L~~l~ls~N~l~g~~ 620 (1020)
+..+++|+.|++++|......
T Consensus 133 ~~~~~~l~~L~~Ld~~~n~~~~~~ 156 (176)
T 1a9n_A 133 LYVIYKVPQVRVLDFQKVKLKERQ 156 (176)
T ss_dssp HHHHHHCTTCSEETTEECCHHHHH
T ss_pred HHHHHHCCccceeCCCcCCHHHHH
Confidence 999999999999999987533
No 391
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.51 E-value=2.7e-16 Score=160.98 Aligned_cols=154 Identities=21% Similarity=0.220 Sum_probs=81.2
Q ss_pred cccccccccccccccccccch------hhhhhcccccccccccccCCCCCcccccCCCccEEEccCCcCcccCcccccCC
Q 035998 203 NCASLEHLCLGMNDLTGGIAD------DIFQLQKLRLLGLQDNQLSGKLSPSIADLSNLVRLDVSSNNFSGNIPDVFAGL 276 (1020)
Q Consensus 203 ~l~~L~~L~L~~N~l~~~~~~------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 276 (1020)
....++.++++.|.+++.+|. .+..+++|++|+|++|++++ +| .+..+++|++|++++|.++ .+|..+..+
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~ 92 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVA 92 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHH
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcC
Confidence 344555555666665555554 56666666666666666654 44 5556666666666666665 344455555
Q ss_pred cccceeecccccccccCCCCCcCCcccccccccccccccccccCCCCCCCcCEEEcCCCccCCCCCCCCCCCCCCCeEec
Q 035998 277 GEFQYLVAHSNRFTGRIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNKFNGPLPTNLPRCRKLKNINL 356 (1020)
Q Consensus 277 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 356 (1020)
++|++|++++|++++. | .+..+++|++|++++|++++..+ ...+..+++|++|++
T Consensus 93 ~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~-----------------------~~~l~~l~~L~~L~l 147 (198)
T 1ds9_A 93 DTLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGE-----------------------IDKLAALDKLEDLLL 147 (198)
T ss_dssp HHCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHH-----------------------HHHHTTTTTCSEEEE
T ss_pred CcCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhH-----------------------HHHHhcCCCCCEEEe
Confidence 5555555555555542 2 34444444444444444443221 023444555555555
Q ss_pred CCCcccccCcc----------cccCCCCCCeeeCCCCCCc
Q 035998 357 ARNNFSGQIPE----------TYKNFESLSYLSLSNSSIY 386 (1020)
Q Consensus 357 ~~N~l~~~~p~----------~~~~l~~L~~L~l~~N~i~ 386 (1020)
++|++++..|. .+..+++|++|| +|.++
T Consensus 148 ~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 148 AGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp CSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred cCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 55555444333 256666666665 55544
No 392
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.50 E-value=2.2e-16 Score=161.57 Aligned_cols=152 Identities=18% Similarity=0.297 Sum_probs=107.5
Q ss_pred hhhhcccccccccccccCCCCCc------ccccCCCccEEEccCCcCcccCcccccCCcccceeecccccccccCCCCCc
Q 035998 225 IFQLQKLRLLGLQDNQLSGKLSP------SIADLSNLVRLDVSSNNFSGNIPDVFAGLGEFQYLVAHSNRFTGRIPHSLS 298 (1020)
Q Consensus 225 ~~~l~~L~~L~L~~N~l~~~~~~------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 298 (1020)
+.....++.++++.|.++|..|. .+..+++|++|++++|++++ +| .+..+++|++|++++|+++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 55667888889999998887776 77777788888888877775 44 6666666666666666666 3344343
Q ss_pred CCcccccccccccccccccccCCCCCCCcCEEEcCCCccCCCCCCCCCCCCCCCeEecCCCcccccCc-ccccCCCCCCe
Q 035998 299 NSPTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNKFNGPLPTNLPRCRKLKNINLARNNFSGQIP-ETYKNFESLSY 377 (1020)
Q Consensus 299 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~ 377 (1020)
.+ ++|++|+|++|++++ +| .+..+++|++|++++|++++..+ ..+..+++|++
T Consensus 91 ~~------------------------~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~ 144 (198)
T 1ds9_A 91 VA------------------------DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLED 144 (198)
T ss_dssp HH------------------------HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSE
T ss_pred cC------------------------CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCE
Confidence 33 455555555555553 33 46677788888888888875433 57899999999
Q ss_pred eeCCCCCCcchhhH--------HHHHhhhcccchhh
Q 035998 378 LSLSNSSIYNLSSA--------LQVLQQCRNLTTLV 405 (1020)
Q Consensus 378 L~l~~N~i~~l~~~--------~~~l~~l~~L~~L~ 405 (1020)
|++++|++...+.. ...+..+++|+.|+
T Consensus 145 L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 145 LLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred EEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 99999998765321 23477888888886
No 393
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=1.3e-14 Score=145.31 Aligned_cols=138 Identities=17% Similarity=0.132 Sum_probs=97.8
Q ss_pred ccccCCCccEEEccCCcCcccCcccccCCcccceeecccccccccCCCCCcCCcccccccccccccccccccCCCCCCCc
Q 035998 248 SIADLSNLVRLDVSSNNFSGNIPDVFAGLGEFQYLVAHSNRFTGRIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNL 327 (1020)
Q Consensus 248 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 327 (1020)
.+.++++|++|++++|+++. +|......++|++|++++|++++. ..+..+++|++|++++|.+++..+..+..+++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred hcCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 45556677777777777763 343222233677777777777754 567777777778888887776555555777888
Q ss_pred CEEEcCCCccCCCCCC--CCCCCCCCCeEecCCCcccccCcc----cccCCCCCCeeeCCCCCCcchhh
Q 035998 328 TSLDLGTNKFNGPLPT--NLPRCRKLKNINLARNNFSGQIPE----TYKNFESLSYLSLSNSSIYNLSS 390 (1020)
Q Consensus 328 ~~L~L~~N~l~~~~p~--~l~~l~~L~~L~L~~N~l~~~~p~----~~~~l~~L~~L~l~~N~i~~l~~ 390 (1020)
++|+|++|+|+ .+|. .+..+++|+.|++++|+++. +|. .+..+++|++|++++|.+.+...
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~~~~~ 157 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLKERQE 157 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHHHHHH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHHHHHH
Confidence 88888888886 4554 67788888888888888874 455 38888899999999888665443
No 394
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.48 E-value=3.8e-13 Score=153.37 Aligned_cols=269 Identities=13% Similarity=0.089 Sum_probs=160.2
Q ss_pred ccccccccccCCCCCcEEecCCCCCCCCCCccccCCCCCCeeeccCCCCCCCCCCcc-CCCCcceeeeccCccCCCCCcc
Q 035998 97 LKGKLSESLGNLVQLRFLNLSHNLLKGTVPVSLVNLPNLEVLDLSSNDLSGPLPQTI-NLPSIQVLDISSNSLNGSVPTS 175 (1020)
Q Consensus 97 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-~l~~L~~L~Ls~N~l~~~ip~~ 175 (1020)
++.....+|.++++|+.+.|.. .++..-..+|.++++|+.++|.++ ++.+....+ ++.+|+.+.+..+ +. .+...
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~~~ 134 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIGVE 134 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECTT
T ss_pred EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eecce
Confidence 3334456788899999999974 476455667999999999999754 665556666 7888888777654 33 45555
Q ss_pred ccccCCcccEEEccCCCCCCCCCCccccccccccccccccccccccchhhhhhcccccccccccccCCCCCcccccCCCc
Q 035998 176 ICKNSSRIRVINLSVNYFSGTLSPGLGNCASLEHLCLGMNDLTGGIADDIFQLQKLRLLGLQDNQLSGKLSPSIADLSNL 255 (1020)
Q Consensus 176 ~~~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 255 (1020)
.|.+...+........ ......+|.++++|+.+.+.++. +......|.++.+|+.+++..| ++.+...+|.++..|
T Consensus 135 aF~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L 210 (394)
T 4fs7_A 135 AFKGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILL 210 (394)
T ss_dssp TTTTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTC
T ss_pred eeecccccccccCccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhcccccc
Confidence 5555544433333222 22334567777777777776553 3244556667777777777665 443455667777777
Q ss_pred cEEEccCCcCcccCcccccCCcccceeecccccccccCCCCCcCCcccccccccccccccccccCCCCCCCcCEEEcCCC
Q 035998 256 VRLDVSSNNFSGNIPDVFAGLGEFQYLVAHSNRFTGRIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTN 335 (1020)
Q Consensus 256 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 335 (1020)
+.+.+..+... +.+.+....+|+.+.+..+ ++......|.++..|+.+.+..+... .....|.....++.+.+..+
T Consensus 211 ~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~ 286 (394)
T 4fs7_A 211 ENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSV 286 (394)
T ss_dssp CBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSS
T ss_pred ceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCce
Confidence 77766655432 1222233345566555432 23344455666666666666555333 44455566666666666555
Q ss_pred ccCCCCCCCCCCCCCCCeEecCCCcccccCcccccCCCCCCeeeCC
Q 035998 336 KFNGPLPTNLPRCRKLKNINLARNNFSGQIPETYKNFESLSYLSLS 381 (1020)
Q Consensus 336 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~ 381 (1020)
.+. ...|..+.+|+.+.+.++ ++.....+|.++.+|+.+++.
T Consensus 287 ~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp 328 (394)
T 4fs7_A 287 IVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLP 328 (394)
T ss_dssp EEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCC
T ss_pred eec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeC
Confidence 432 234556666666666543 444445556666666666664
No 395
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.47 E-value=1.6e-12 Score=148.18 Aligned_cols=219 Identities=11% Similarity=0.085 Sum_probs=104.5
Q ss_pred CccccCCCCCCeeeccCCCCCCCCCCcc-CCCCcceeeeccCccCCCCCccccccCCcccEEEccCCCCCCCCCCccccc
Q 035998 126 PVSLVNLPNLEVLDLSSNDLSGPLPQTI-NLPSIQVLDISSNSLNGSVPTSICKNSSRIRVINLSVNYFSGTLSPGLGNC 204 (1020)
Q Consensus 126 p~~l~~l~~L~~L~L~~n~l~~~~p~~~-~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~l~~l 204 (1020)
..+|.++.+|+.+.|.. .++.+...+| ++++|+.++|..+ ++ .|+. .+|.++
T Consensus 64 ~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~------------------------~aF~~c 116 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VK-MIGR------------------------CTFSGC 116 (394)
T ss_dssp TTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CC-EECT------------------------TTTTTC
T ss_pred HHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ce-Eccc------------------------hhhccc
Confidence 34566666666666653 2444444444 4555555555433 22 2333 344445
Q ss_pred cccccccccccccccccchhhhhhcccccccccccccCCCCCcccccCCCccEEEccCCcCcccCcccccCCcccceeec
Q 035998 205 ASLEHLCLGMNDLTGGIADDIFQLQKLRLLGLQDNQLSGKLSPSIADLSNLVRLDVSSNNFSGNIPDVFAGLGEFQYLVA 284 (1020)
Q Consensus 205 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 284 (1020)
++|+.+.+..+ ++.....+|.+...+........ ......+|.++++|+.+.+..+. ..+....|.++.+|+.+.+
T Consensus 117 ~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l 192 (394)
T 4fs7_A 117 YALKSILLPLM-LKSIGVEAFKGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKL 192 (394)
T ss_dssp TTCCCCCCCTT-CCEECTTTTTTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCC
T ss_pred ccchhhcccCc-eeeecceeeecccccccccCccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEc
Confidence 55555444332 22233333443332222222211 11234566777777777776543 3355566666666776666
Q ss_pred ccccccccCCCCCcCCcccccccccccccccccccCCCCCCCcCEEEcCCCccCCCCCCCCCCCCCCCeEecCCCccccc
Q 035998 285 HSNRFTGRIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNKFNGPLPTNLPRCRKLKNINLARNNFSGQ 364 (1020)
Q Consensus 285 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 364 (1020)
..| ++.....+|.++..|+.+.+.++... +...+....+|+.+.+..+. +......+..+.+|+.+.+..+... .
T Consensus 193 ~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i 267 (394)
T 4fs7_A 193 PRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-I 267 (394)
T ss_dssp CTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-E
T ss_pred CCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcce-e
Confidence 555 44455556666666666666554332 11122233455555554332 2233344555555555555544332 3
Q ss_pred CcccccCCCCCCeeeC
Q 035998 365 IPETYKNFESLSYLSL 380 (1020)
Q Consensus 365 ~p~~~~~l~~L~~L~l 380 (1020)
....|.....++.+.+
T Consensus 268 ~~~~F~~~~~l~~~~~ 283 (394)
T 4fs7_A 268 GGSLFYNCSGLKKVIY 283 (394)
T ss_dssp CSCTTTTCTTCCEEEE
T ss_pred eccccccccccceecc
Confidence 3344444444444433
No 396
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.41 E-value=7.1e-13 Score=131.57 Aligned_cols=113 Identities=22% Similarity=0.293 Sum_probs=75.9
Q ss_pred CCCCCCCcCceEEcCCCCCCCCCCCCCCCceEEEecCCCcccccccccccCCCCCcEEecCCCCCCCCCCccccCCCCCC
Q 035998 57 ASSSDCCHWVGITCNSSSSLGLNDSIGSGRVTGLFLYKRRLKGKLSESLGNLVQLRFLNLSHNLLKGTVPVSLVNLPNLE 136 (1020)
Q Consensus 57 ~~~~~~C~w~gv~C~~~~~~~~~~~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 136 (1020)
++..+-|+|+.|.|+....+.+ |..+. ++|++|+|++|+|++..|..|.++++|+
T Consensus 3 CP~~C~C~~~~l~~s~n~l~~i-----------------------p~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~ 57 (170)
T 3g39_A 3 CPSQCSCSGTTVDCSGKSLASV-----------------------PTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLT 57 (170)
T ss_dssp CC-CCEEETTEEECTTSCCSSC-----------------------CSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCS
T ss_pred CcCcCCcCCCEEEeCCCCcCcc-----------------------CccCC--CCCcEEEcCCCcCCccChhhhcCcccCC
Confidence 4555668899888876544333 33332 5667777777777766666677777777
Q ss_pred eeeccCCCCCCCCCCcc-CCCCcceeeeccCccCCCCCccccccCCcccEEEccCCCCCC
Q 035998 137 VLDLSSNDLSGPLPQTI-NLPSIQVLDISSNSLNGSVPTSICKNSSRIRVINLSVNYFSG 195 (1020)
Q Consensus 137 ~L~L~~n~l~~~~p~~~-~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~ 195 (1020)
+|+|++|+|++.++..+ ++++|++|+|++|+|+ .+|...+..+++|+.|+|++|.+..
T Consensus 58 ~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 58 RLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred EEECCCCCcCccChhhccCCCCCCEEECCCCccC-EeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 77777777776666665 6777777777777776 5555555667777777777777763
No 397
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.40 E-value=6.9e-13 Score=132.11 Aligned_cols=104 Identities=25% Similarity=0.260 Sum_probs=59.8
Q ss_pred cEEecccccccccccccccCcCcCcEEeCCCCcccccCCCCCCCCcccccccCcCCCCCCCcccceeecccccccccccc
Q 035998 451 QLVDLSWNQLSGTIPVWFGGFQDLFYLDLSNNTFTGEIPKNLTGLPSLITRNISLEEPSPDFPFFMRRNVSARGLQYNQI 530 (1020)
Q Consensus 451 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~s~~~~~~~~~~~~~~~~~~~~l~~n~~ 530 (1020)
+.+++++|+++ .+|..+. ++|++|+|++|+|++.+|..|.++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------------------------------- 59 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNL-------------------------------- 59 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTC--------------------------------
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCC--------------------------------
Confidence 56677777765 5555443 566666666666665555555555544
Q ss_pred cCCCCeeecccCccccCCCccccCCCcceEEEecCCcceeccCccccCCCcccEEEccCCccc
Q 035998 531 WSFPPTIDLSLNRLDGSIWPEFGNLKKLHVFDLKHNNLSGPIPSELTGMTSLETLDLSYNNLS 593 (1020)
Q Consensus 531 ~~~~~~l~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 593 (1020)
+.|+|++|+|++..+..|+.+++|+.|+|++|+|++..|..|..+++|++|+|++|+++
T Consensus 60 ----~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 60 ----QQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp ----CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ----CEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 23444555555444444555666666666666665433334666666666666666665
No 398
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.39 E-value=1.4e-12 Score=129.38 Aligned_cols=90 Identities=23% Similarity=0.227 Sum_probs=58.1
Q ss_pred cccccccccccccccccccCCCCCCCcCEEEcCCCccCCCCCCCCCCCCCCCeEecCCCcccccCcccccCCCCCCeeeC
Q 035998 301 PTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNKFNGPLPTNLPRCRKLKNINLARNNFSGQIPETYKNFESLSYLSL 380 (1020)
Q Consensus 301 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l 380 (1020)
++|++|+|++|+|++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 45555566666666555556666666666666666666555556666677777777777776655556677777777777
Q ss_pred CCCCCcchhh
Q 035998 381 SNSSIYNLSS 390 (1020)
Q Consensus 381 ~~N~i~~l~~ 390 (1020)
++|++.....
T Consensus 110 ~~N~~~c~c~ 119 (170)
T 3g39_A 110 LNNPWDCACS 119 (170)
T ss_dssp CSSCBCTTBG
T ss_pred CCCCCCCCch
Confidence 7777664443
No 399
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.38 E-value=1.8e-12 Score=129.10 Aligned_cols=92 Identities=20% Similarity=0.190 Sum_probs=62.3
Q ss_pred cccccccccccccccccccCCCCCCCcCEEEcCCCccCCCCCCCCCCCCCCCeEecCCCcccccCcccccCCCCCCeeeC
Q 035998 301 PTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNKFNGPLPTNLPRCRKLKNINLARNNFSGQIPETYKNFESLSYLSL 380 (1020)
Q Consensus 301 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l 380 (1020)
++|++|+|++|+|++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 45566666666666665666666677777777777777655555677777777777777777655556777777777777
Q ss_pred CCCCCcchhhHH
Q 035998 381 SNSSIYNLSSAL 392 (1020)
Q Consensus 381 ~~N~i~~l~~~~ 392 (1020)
++|++...+..+
T Consensus 113 ~~N~~~c~~~~~ 124 (174)
T 2r9u_A 113 YNNPWDCECRDI 124 (174)
T ss_dssp CSSCBCTTBGGG
T ss_pred CCCCcccccccH
Confidence 777776655433
No 400
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.26 E-value=1.5e-10 Score=131.87 Aligned_cols=331 Identities=10% Similarity=0.110 Sum_probs=185.3
Q ss_pred ccccccCCC-CCcEEecCCCCCCCCCCccccCCCCCCeeeccCCC---CCCCCCCcc-CCCCcceeeeccCccCCCCCcc
Q 035998 101 LSESLGNLV-QLRFLNLSHNLLKGTVPVSLVNLPNLEVLDLSSND---LSGPLPQTI-NLPSIQVLDISSNSLNGSVPTS 175 (1020)
Q Consensus 101 ~~~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~---l~~~~p~~~-~l~~L~~L~Ls~N~l~~~ip~~ 175 (1020)
...+|.+.+ .|+.+.+..+ ++..-..+|.++++|+.+.++.|. ++.+....| ++.+|+.+.+..+ ++ .++..
T Consensus 55 g~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~I~~~ 131 (394)
T 4gt6_A 55 GDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-EIDSE 131 (394)
T ss_dssp CTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-EECTT
T ss_pred CHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-eehhh
Confidence 345677764 5889988754 665566779999999999998764 555556666 6788888877655 44 67777
Q ss_pred ccccCCcccEEEccCCCCCCCCCCccccccccccccccccccccccchhhhhhcccccccccccccCCCCCcccccCCCc
Q 035998 176 ICKNSSRIRVINLSVNYFSGTLSPGLGNCASLEHLCLGMNDLTGGIADDIFQLQKLRLLGLQDNQLSGKLSPSIADLSNL 255 (1020)
Q Consensus 176 ~~~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 255 (1020)
.|..+.+|+.+.+..+ +.......|.++.+|+.+.+.++ ++.....+| ...+|+.+.+..+-.. ....+|.++.++
T Consensus 132 aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF-~~~~l~~i~ip~~~~~-i~~~af~~c~~l 207 (394)
T 4gt6_A 132 AFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAF-TGTALTQIHIPAKVTR-IGTNAFSECFAL 207 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTT-TTCCCSEEEECTTCCE-ECTTTTTTCTTC
T ss_pred hhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccc-cccceeEEEECCcccc-cccchhhhcccc
Confidence 7778888888888644 34355667778888888887655 442333333 3456777777655333 445667777777
Q ss_pred cEEEccCCcCcccCcccccCCcccceeecccccccccCCCCCcCCcccccccccccccccccccCCCCCCCcCEEEcCCC
Q 035998 256 VRLDVSSNNFSGNIPDVFAGLGEFQYLVAHSNRFTGRIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTN 335 (1020)
Q Consensus 256 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 335 (1020)
+......+......-..+........... .+.....+..+.+. +.++......|..+.+|+.+.+.++
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~ 275 (394)
T 4gt6_A 208 STITSDSESYPAIDNVLYEKSANGDYALI-----------RYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDS 275 (394)
T ss_dssp CEEEECCSSSCBSSSCEEEECTTSCEEEE-----------ECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTT
T ss_pred ceecccccccccccceeeccccccccccc-----------ccccccccceEEcC-CcceEcccceeeecccccEEecccc
Confidence 77776665544221111111100000000 00111122222222 2233344556666777777777655
Q ss_pred ccCCCCCCCCCCCCCCCeEecCCCcccccCcccccCCCCCCeeeCCCCCCcchhhHHHHHhhhcccchhhhhccccCCCC
Q 035998 336 KFNGPLPTNLPRCRKLKNINLARNNFSGQIPETYKNFESLSYLSLSNSSIYNLSSALQVLQQCRNLTTLVLTLNFRNEKL 415 (1020)
Q Consensus 336 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~i~~l~~~~~~l~~l~~L~~L~l~~n~~~~~~ 415 (1020)
..+ ....+|.++.+|+.+.+. +.++.....+|.++.+|+.+++..+ ++.+..
T Consensus 276 ~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~------------------------- 327 (394)
T 4gt6_A 276 VVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILD------------------------- 327 (394)
T ss_dssp CCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECT-------------------------
T ss_pred cce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehH-------------------------
Confidence 443 555667777777777775 4455455567777777777777543 333322
Q ss_pred CCCccccccCceEEEecccccccccchhhhcCCCCcEEecccccccccccccccCcCcCcEEeCCCCcc
Q 035998 416 PTDPRLHFANLKVLVIASCGLRGSIPQWLRGCSKLQLVDLSWNQLSGTIPVWFGGFQDLFYLDLSNNTF 484 (1020)
Q Consensus 416 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 484 (1020)
..+....+|+.+.+..+ +..+-..+|.++++|+.+++.+|.... ..|....+|+.+.+..|.+
T Consensus 328 --~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 328 --DAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp --TTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred --hHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 12222233333333222 333445566777777777777665431 3455566666666655543
No 401
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.26 E-value=5e-14 Score=158.30 Aligned_cols=186 Identities=17% Similarity=0.197 Sum_probs=89.8
Q ss_pred CCcccEEEccCCCCCCCCCCccccc-----cccccccccccccccccchhhh-hhcccccccccccccCCCCCcccc---
Q 035998 180 SSRIRVINLSVNYFSGTLSPGLGNC-----ASLEHLCLGMNDLTGGIADDIF-QLQKLRLLGLQDNQLSGKLSPSIA--- 250 (1020)
Q Consensus 180 ~~~L~~L~L~~N~l~~~~~~~l~~l-----~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~--- 250 (1020)
.+.|+.|+|++|.++......+... ++|++|+|++|.++......+. .+++|+.|+|++|+|+......+.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 3456677777777664333332222 4666666666666543333332 345555566666555432222221
Q ss_pred --cCCCccEEEccCCcCcccCcccccCCcccceeecccccccccCCCCCcCCccccccccccccccccc----ccCCCCC
Q 035998 251 --DLSNLVRLDVSSNNFSGNIPDVFAGLGEFQYLVAHSNRFTGRIPHSLSNSPTLNLLNLRNNSLDGSL----LLNCPAL 324 (1020)
Q Consensus 251 --~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l 324 (1020)
..++|++|+|++|.|+...... ++..+..+++|++|+|++|.|++.. ...+...
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~--------------------l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~ 210 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAV--------------------LMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRN 210 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHH--------------------HHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGC
T ss_pred HhcCCccceeeCCCCCCChHHHHH--------------------HHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcC
Confidence 2344555555555554311111 1122233444555555555554321 2334445
Q ss_pred CCcCEEEcCCCccCCC----CCCCCCCCCCCCeEecCCCcccccCcccccCCCC-----CCeee--CCCCCC
Q 035998 325 TNLTSLDLGTNKFNGP----LPTNLPRCRKLKNINLARNNFSGQIPETYKNFES-----LSYLS--LSNSSI 385 (1020)
Q Consensus 325 ~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~-----L~~L~--l~~N~i 385 (1020)
++|++|+|++|.|++. ++..+...++|++|+|++|.|+......+..+.. |+.+. +..|.+
T Consensus 211 ~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~ 282 (372)
T 3un9_A 211 RQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV 282 (372)
T ss_dssp SCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----C
T ss_pred CCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCcc
Confidence 5677777777766532 2233344567777777777776554444433321 55555 555544
No 402
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.26 E-value=1e-13 Score=155.74 Aligned_cols=44 Identities=16% Similarity=0.135 Sum_probs=21.8
Q ss_pred hhhhcCCCCcEEecccccccccccccccCcC-----cCcEEe--CCCCccc
Q 035998 442 QWLRGCSKLQLVDLSWNQLSGTIPVWFGGFQ-----DLFYLD--LSNNTFT 485 (1020)
Q Consensus 442 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-----~L~~L~--Ls~N~l~ 485 (1020)
..+...++|++|+|++|.|++.-...+..+. .|+.+. +..|.++
T Consensus 233 ~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 233 RAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 3444556677777777777654444443321 155555 5555554
No 403
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.20 E-value=2.8e-11 Score=135.45 Aligned_cols=137 Identities=19% Similarity=0.137 Sum_probs=99.2
Q ss_pred CCcCceEEcCCCCCCCCCCCCCCCceEEEecCCCcccccccccccCCCCCcEEecCC-CCCCCCCCccccCCCCCCeeec
Q 035998 62 CCHWVGITCNSSSSLGLNDSIGSGRVTGLFLYKRRLKGKLSESLGNLVQLRFLNLSH-NLLKGTVPVSLVNLPNLEVLDL 140 (1020)
Q Consensus 62 ~C~w~gv~C~~~~~~~~~~~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~L 140 (1020)
-|.|.+|.|++. |+++ .+|. |..+++|++|+|++ |.|++..|..|++|++|++|+|
T Consensus 7 ~C~~~~v~~~~~---------------------n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l 63 (347)
T 2ifg_A 7 PHGSSGLRCTRD---------------------GALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTI 63 (347)
T ss_dssp CSSSSCEECCSS---------------------CCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEEC
T ss_pred cccCCEEEcCCC---------------------CCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEEC
Confidence 399999999753 1343 3666 88888899999986 8888777788899999999999
Q ss_pred cCCCCCCCCCCcc-CCCCcceeeeccCccCCCCCccccccCCcccEEEccCCCCCCCCC-Cccccccccccccccccccc
Q 035998 141 SSNDLSGPLPQTI-NLPSIQVLDISSNSLNGSVPTSICKNSSRIRVINLSVNYFSGTLS-PGLGNCASLEHLCLGMNDLT 218 (1020)
Q Consensus 141 ~~n~l~~~~p~~~-~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~ 218 (1020)
++|+|++.+|..+ ++++|++|+|++|+|+ .+|...+..++ |+.|+|++|.+...-. .+|..........+..+.++
T Consensus 64 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~ 141 (347)
T 2ifg_A 64 VKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQ 141 (347)
T ss_dssp CSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCC
T ss_pred CCCccceeCHHHhcCCcCCCEEeCCCCccc-eeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCC
Confidence 9999998888887 7899999999999998 67777776666 9999999998874321 12222222233344455555
Q ss_pred cccch
Q 035998 219 GGIAD 223 (1020)
Q Consensus 219 ~~~~~ 223 (1020)
-..|.
T Consensus 142 C~~~~ 146 (347)
T 2ifg_A 142 CHGQG 146 (347)
T ss_dssp CSSSS
T ss_pred CCCCh
Confidence 44444
No 404
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Probab=99.17 E-value=8.1e-11 Score=125.97 Aligned_cols=143 Identities=14% Similarity=0.069 Sum_probs=112.0
Q ss_pred ccCCCcCCeeeccCCeEEEEEEeCCCCEEEEEEecCCchhhHHHHHHHHHHHHHcC-CCccceEeeEEeccCceEEEEEe
Q 035998 741 TNNFDQANIIGCGGFGLVYRATLPDGRNVAIKRLSGDCGQMEREFRAEVEALSRAQ-HPNLVHLQGYCMHKNDRLLIYSF 819 (1020)
Q Consensus 741 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e~ 819 (1020)
-..|++....+.|+.+.||++... ++.+++|+...........+.+|+++++.+. +..+.++++++.+.+..|+||||
T Consensus 13 l~~~~~~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~e~ 91 (263)
T 3tm0_A 13 IEKYRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSE 91 (263)
T ss_dssp HTTSEEEECCSCCSSSEEEEEECS-SCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEEC
T ss_pred hccceeEeeccCCCCCeEEEEECC-CCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEEEEEe
Confidence 356888888898999999999864 6899999987532122345889999999984 67788999999888889999999
Q ss_pred ccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcC-------------------------------------
Q 035998 820 MENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSC------------------------------------- 862 (1020)
Q Consensus 820 ~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~------------------------------------- 862 (1020)
++|.++.+.... ......++.+++++++.||+..
T Consensus 92 i~G~~l~~~~~~---------~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (263)
T 3tm0_A 92 ADGVLCSEEYED---------EQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDT 162 (263)
T ss_dssp CSSEEHHHHCCT---------TTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGGSTTC
T ss_pred cCCeehhhccCC---------cccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhccccccccccccccc
Confidence 999998765321 1223478889999999999810
Q ss_pred -------------------CCCeEecCCCCCCEEEcCCCCeEEeeccccc
Q 035998 863 -------------------EPHILHRDIKSSNILLDGNFGAHLADFGLAR 893 (1020)
Q Consensus 863 -------------------~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~ 893 (1020)
.+.++|+|++|.||+++++..+.|+||+.+.
T Consensus 163 ~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~ 212 (263)
T 3tm0_A 163 PFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSG 212 (263)
T ss_dssp SSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCE
T ss_pred cCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhcc
Confidence 1369999999999999876556799999764
No 405
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.16 E-value=9.6e-10 Score=125.09 Aligned_cols=322 Identities=14% Similarity=0.102 Sum_probs=166.8
Q ss_pred cccccccccccCCCCCcccccCCCccEEEccCCc---CcccCcccccCCcccceeecccccccccCCCCCcCCccccccc
Q 035998 231 LRLLGLQDNQLSGKLSPSIADLSNLVRLDVSSNN---FSGNIPDVFAGLGEFQYLVAHSNRFTGRIPHSLSNSPTLNLLN 307 (1020)
Q Consensus 231 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~---l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 307 (1020)
|+.+.+.++ ++.+-..+|.++++|+.+.++.|. ++.+...+|.++.+|+.+.+..+ ++.....+|.++.+|+.+.
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence 555555433 443445566666666666665553 44444556666666666555443 4434455566666666666
Q ss_pred ccccccccccccCCCCCCCcCEEEcCCCccCCCCCCCCCCCCCCCeEecCCCcccccCcccccCCCCCCeeeCCCCCCcc
Q 035998 308 LRNNSLDGSLLLNCPALTNLTSLDLGTNKFNGPLPTNLPRCRKLKNINLARNNFSGQIPETYKNFESLSYLSLSNSSIYN 387 (1020)
Q Consensus 308 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~i~~ 387 (1020)
+..+ +.......|....+|+.+.+..+ ++.....+|.. .+|+.+.+..+-.. ....+|....+++......+....
T Consensus 144 lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~~ 219 (394)
T 4gt6_A 144 IPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESYPA 219 (394)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSSCB
T ss_pred ccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhccccceeccccccccc
Confidence 6533 33344455666666666666554 33233444433 45666666544322 444556666666666555444332
Q ss_pred hhhHHHHHhhhcccchhhhhccccCCCCCCCccccccCceEEEecccccccccchhhhcCCCCcEEeccccccccccccc
Q 035998 388 LSSALQVLQQCRNLTTLVLTLNFRNEKLPTDPRLHFANLKVLVIASCGLRGSIPQWLRGCSKLQLVDLSWNQLSGTIPVW 467 (1020)
Q Consensus 388 l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 467 (1020)
+...+ +..... ....+ ........+....+. +.+...-..+|.++.+|+.+.+..+..+ .-...
T Consensus 220 ~~~~~--~~~~~~-~~~~~-----------~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~a 283 (394)
T 4gt6_A 220 IDNVL--YEKSAN-GDYAL-----------IRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSVVS-IGTGA 283 (394)
T ss_dssp SSSCE--EEECTT-SCEEE-----------EECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTT
T ss_pred cccee--eccccc-ccccc-----------cccccccccceEEcC-CcceEcccceeeecccccEEecccccce-ecCcc
Confidence 22110 000000 00000 000001112222221 2233344567778888888888766544 55667
Q ss_pred ccCcCcCcEEeCCCCcccccCCCCCCCCcccccccCcCCCCCCCcccceeecccccccccccccCCCCeeecccCccccC
Q 035998 468 FGGFQDLFYLDLSNNTFTGEIPKNLTGLPSLITRNISLEEPSPDFPFFMRRNVSARGLQYNQIWSFPPTIDLSLNRLDGS 547 (1020)
Q Consensus 468 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~s~~~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~l~Ls~N~l~~~ 547 (1020)
|.++.+|+.+.+. +.++......|.++.+|+.+++ .. .++..
T Consensus 284 F~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~l------------------------------------p~-~v~~I 325 (394)
T 4gt6_A 284 FMNCPALQDIEFS-SRITELPESVFAGCISLKSIDI------------------------------------PE-GITQI 325 (394)
T ss_dssp TTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEEC------------------------------------CT-TCCEE
T ss_pred cccccccccccCC-CcccccCceeecCCCCcCEEEe------------------------------------CC-cccEe
Confidence 7888888888885 3455344556766666644332 11 12223
Q ss_pred CCccccCCCcceEEEecCCcceeccCccccCCCcccEEEccCCcccccCCccccccccccccccccccc
Q 035998 548 IWPEFGNLKKLHVFDLKHNNLSGPIPSELTGMTSLETLDLSYNNLSGAIPISLEKLSFLSKFSVANNHL 616 (1020)
Q Consensus 548 ~~~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l 616 (1020)
...+|.++.+|+.+.|..+ ++..-...|.++++|+.+++++|.... ..+....+|+.+.+..|.+
T Consensus 326 ~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 326 LDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred hHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 3456778888888888654 653344678888888888888776542 3566667777777665544
No 406
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.12 E-value=7.5e-11 Score=131.92 Aligned_cols=90 Identities=14% Similarity=0.092 Sum_probs=45.7
Q ss_pred ccCCcccceeeccc-ccccccCCCCCcCCcccccccccccccccccccCCCCCCCcCEEEcCCCccCCCCCCCCCCCCCC
Q 035998 273 FAGLGEFQYLVAHS-NRFTGRIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNKFNGPLPTNLPRCRKL 351 (1020)
Q Consensus 273 ~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 351 (1020)
+..+++|+.|+|++ |+|++..+..|.++++|+.|+|++|+|++..+..|..+++|++|+|++|+|++..+..|..++ |
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L 105 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-L 105 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-C
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-c
Confidence 33333444444432 444433334444444444444444444444444455555566666666666544444444444 6
Q ss_pred CeEecCCCcccc
Q 035998 352 KNINLARNNFSG 363 (1020)
Q Consensus 352 ~~L~L~~N~l~~ 363 (1020)
+.|+|++|++..
T Consensus 106 ~~l~l~~N~~~c 117 (347)
T 2ifg_A 106 QELVLSGNPLHC 117 (347)
T ss_dssp CEEECCSSCCCC
T ss_pred eEEEeeCCCccC
Confidence 777777776653
No 407
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=99.04 E-value=3.2e-10 Score=121.16 Aligned_cols=137 Identities=15% Similarity=0.086 Sum_probs=100.8
Q ss_pred CCCcCCeeeccCCeEEEEEEeCCCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCc--cceEeeEEeccCceEEEEEec
Q 035998 743 NFDQANIIGCGGFGLVYRATLPDGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPN--LVHLQGYCMHKNDRLLIYSFM 820 (1020)
Q Consensus 743 ~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~l~~~~~~~~~~~lv~e~~ 820 (1020)
.|.+..+.+.|..+.||++...+|+.+++|..... ....+.+|+++++.+.+.+ +.+++++....+..++||||+
T Consensus 21 ~~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~---~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e~i 97 (264)
T 1nd4_A 21 GYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSG---ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEV 97 (264)
T ss_dssp TCEEEECSCTTSSCEEEEEECTTSCCEEEEEECSC---TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECC
T ss_pred CCceEecccCCCCceEEEEecCCCCeEEEEeCCcc---cchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEEec
Confidence 34443333466679999998877888999997654 1245778999999986544 456888888777889999999
Q ss_pred cCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcC--------------------------------------
Q 035998 821 ENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSC-------------------------------------- 862 (1020)
Q Consensus 821 ~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~-------------------------------------- 862 (1020)
+|.++. ... .+ ...++.++++.++.||+..
T Consensus 98 ~G~~l~--~~~-------~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (264)
T 1nd4_A 98 PGQDLL--SSH-------LA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGL 165 (264)
T ss_dssp SSEETT--TSC-------CC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTC
T ss_pred CCcccC--cCc-------CC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhccCc
Confidence 998874 111 11 2356778888888888642
Q ss_pred -----------------CCCeEecCCCCCCEEEcCCCCeEEeecccccc
Q 035998 863 -----------------EPHILHRDIKSSNILLDGNFGAHLADFGLARL 894 (1020)
Q Consensus 863 -----------------~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~ 894 (1020)
...++|||++|.||++++++.+.++||+.+..
T Consensus 166 ~~~~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~~ 214 (264)
T 1nd4_A 166 APAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGV 214 (264)
T ss_dssp CHHHHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCEE
T ss_pred cHHHHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhccc
Confidence 11399999999999998776677999998753
No 408
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.95 E-value=1.2e-10 Score=129.53 Aligned_cols=180 Identities=15% Similarity=0.199 Sum_probs=105.3
Q ss_pred CceEEEecCCCcccc-c-------ccccccCCCCCcEEecCCCCCC---------CCCCccccCCCCCCeeeccCCCCCC
Q 035998 85 GRVTGLFLYKRRLKG-K-------LSESLGNLVQLRFLNLSHNLLK---------GTVPVSLVNLPNLEVLDLSSNDLSG 147 (1020)
Q Consensus 85 ~~v~~l~l~~~~l~~-~-------~~~~l~~l~~L~~L~L~~n~l~---------~~~p~~l~~l~~L~~L~L~~n~l~~ 147 (1020)
.+|++|.+......| . +.+++..+++|+.|.+..+... +.++..+..+++|+.|+|++|.-..
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~ 186 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS 186 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence 467888877655543 1 2445667889999999765431 2355556778999999998873111
Q ss_pred CCCCccCCCCcceeeeccCccCCCCCcccc-ccCCcccEEEccC--CCCCCC-----CCCcc--cccccccccccccccc
Q 035998 148 PLPQTINLPSIQVLDISSNSLNGSVPTSIC-KNSSRIRVINLSV--NYFSGT-----LSPGL--GNCASLEHLCLGMNDL 217 (1020)
Q Consensus 148 ~~p~~~~l~~L~~L~Ls~N~l~~~ip~~~~-~~~~~L~~L~L~~--N~l~~~-----~~~~l--~~l~~L~~L~L~~N~l 217 (1020)
.+. +.+++|++|+|..|.++......++ ..+++|+.|+|+. |...+. +...+ ..+++|++|+|.+|.+
T Consensus 187 -l~~-~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i 264 (362)
T 2ra8_A 187 -IGK-KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEE 264 (362)
T ss_dssp -CCS-CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTT
T ss_pred -ecc-ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCC
Confidence 222 3578899999988877533323333 2577888888753 221111 01112 2356777777777776
Q ss_pred ccccchhhh---hhcccccccccccccCCC----CCcccccCCCccEEEccCCcCc
Q 035998 218 TGGIADDIF---QLQKLRLLGLQDNQLSGK----LSPSIADLSNLVRLDVSSNNFS 266 (1020)
Q Consensus 218 ~~~~~~~~~---~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~ 266 (1020)
++..+..+. .+++|++|+|+.|.|++. ++..+..+++|+.|+|++|.|+
T Consensus 265 ~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 265 QNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp HHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred chHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 644444443 255666666666665532 2222334556666666666555
No 409
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.90 E-value=3.4e-08 Score=111.64 Aligned_cols=283 Identities=13% Similarity=0.127 Sum_probs=139.3
Q ss_pred ceEEEecCCCcccccccccccCCCCCcEEecCCCCCCCCCCccccCCCCCCeeeccCCCCCCCCCCccCCCCcceeeecc
Q 035998 86 RVTGLFLYKRRLKGKLSESLGNLVQLRFLNLSHNLLKGTVPVSLVNLPNLEVLDLSSNDLSGPLPQTINLPSIQVLDISS 165 (1020)
Q Consensus 86 ~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~l~~L~~L~Ls~ 165 (1020)
.++++.+. .+++.....+|.++++|+.++|..+ ++..-..+|.++ +|+.+.+..+ ++.+....+...+|+.+.+..
T Consensus 47 ~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~~L~~i~lp~ 122 (379)
T 4h09_A 47 RISEVRVN-SGITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGTDLDDFEFPG 122 (379)
T ss_dssp GCSEEEEC-TTEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTCCCSEEECCT
T ss_pred CCEEEEeC-CCccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccCCcccccCCC
Confidence 45555554 3455444566777777888777643 553444556665 5666666533 444444555445677777765
Q ss_pred CccCCCCCccccccCCcccEEEccCCCCCCCCCCcccccccccccccccccccccc------------chhhhhhccccc
Q 035998 166 NSLNGSVPTSICKNSSRIRVINLSVNYFSGTLSPGLGNCASLEHLCLGMNDLTGGI------------ADDIFQLQKLRL 233 (1020)
Q Consensus 166 N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~------------~~~~~~l~~L~~ 233 (1020)
+- + .+....|.+. .|+.+.+..+ ++......|.++.+++.+.+..+...... ...+.....+..
T Consensus 123 ~~-~-~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (379)
T 4h09_A 123 AT-T-EIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTE 198 (379)
T ss_dssp TC-C-EECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSE
T ss_pred cc-c-cccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccc
Confidence 42 2 3444444443 3444444332 33344455666666666655544332111 111112222222
Q ss_pred ccccccccCCCCCcccccCCCccEEEccCCcCcccCcccccCCcccceeecccccccccCCCCCcCCccccccccccccc
Q 035998 234 LGLQDNQLSGKLSPSIADLSNLVRLDVSSNNFSGNIPDVFAGLGEFQYLVAHSNRFTGRIPHSLSNSPTLNLLNLRNNSL 313 (1020)
Q Consensus 234 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 313 (1020)
+.+..+. .......+....+|+.+.+..+ ++......|.+...|+.+.+..+ ++.+...+|.++.+|+.+.+..+ +
T Consensus 199 ~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i 274 (379)
T 4h09_A 199 FTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-V 274 (379)
T ss_dssp EECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-C
T ss_pred cccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-c
Confidence 2222211 1122334444555555555433 33344445555555555555443 44444445555555555555432 3
Q ss_pred ccccccCCCCCCCcCEEEcCCCccCCCCCCCCCCCCCCCeEecCCCcccccCcccccCCCCCCeeeCC
Q 035998 314 DGSLLLNCPALTNLTSLDLGTNKFNGPLPTNLPRCRKLKNINLARNNFSGQIPETYKNFESLSYLSLS 381 (1020)
Q Consensus 314 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~ 381 (1020)
.......|..+++|+.+.+.++.++.....+|.++.+|+.+.|..+ ++.....+|.++.+|+.+.+.
T Consensus 275 ~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 275 KTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp SEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred eeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 3344445555555555555555555444455555555555555433 443444455555555555554
No 410
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.86 E-value=6.6e-08 Score=109.30 Aligned_cols=261 Identities=10% Similarity=0.046 Sum_probs=134.1
Q ss_pred ccCCCCCcEEecCCCCCCCCCCccccCCCCCCeeeccCCCCCCCCCCccCCCCcceeeeccCccCCCCCccccccCCccc
Q 035998 105 LGNLVQLRFLNLSHNLLKGTVPVSLVNLPNLEVLDLSSNDLSGPLPQTINLPSIQVLDISSNSLNGSVPTSICKNSSRIR 184 (1020)
Q Consensus 105 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~ 184 (1020)
+....+|+.+.+.. .++.+-..+|.++.+|+.++|..+ ++.+...++.-.+|+.+.+..+ ++ .++...|... +|+
T Consensus 42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c~l~~i~~~~~-l~-~I~~~aF~~~-~L~ 116 (379)
T 4h09_A 42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADTKLQSYTGMER-VK-KFGDYVFQGT-DLD 116 (379)
T ss_dssp GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCCCCEEEECTT-CC-EECTTTTTTC-CCS
T ss_pred cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCCCCceEECCce-ee-EeccceeccC-Ccc
Confidence 44556788888864 455444567888888888888654 6656666663336777776543 33 4555555443 566
Q ss_pred EEEccCCCCCCCCCCccccccccccccccccccccccchhhhhhcccccccccccccCCCCCcccccCCCccEEEccCCc
Q 035998 185 VINLSVNYFSGTLSPGLGNCASLEHLCLGMNDLTGGIADDIFQLQKLRLLGLQDNQLSGKLSPSIADLSNLVRLDVSSNN 264 (1020)
Q Consensus 185 ~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 264 (1020)
.+.+..+ +.......|.+. +|+.+.+..+ ++......|.....++.+.+..+.........+. .+.
T Consensus 117 ~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~-----------~~~ 182 (379)
T 4h09_A 117 DFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVL-----------YNK 182 (379)
T ss_dssp EEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEE-----------EET
T ss_pred cccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeeccccee-----------ccc
Confidence 6666544 222223333332 3443333322 2223333344444444444333222100000000 000
Q ss_pred CcccCcccccCCcccceeecccccccccCCCCCcCCcccccccccccccccccccCCCCCCCcCEEEcCCCccCCCCCCC
Q 035998 265 FSGNIPDVFAGLGEFQYLVAHSNRFTGRIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNKFNGPLPTN 344 (1020)
Q Consensus 265 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~ 344 (1020)
.......+.....+..+.+..+ .+......+....+|+.+.+..+ +.......|.....|+.+.+..+ ++.....+
T Consensus 183 -~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~a 258 (379)
T 4h09_A 183 -NKTILESYPAAKTGTEFTIPST-VKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFL 258 (379)
T ss_dssp -TSSEEEECCTTCCCSEEECCTT-CCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTT
T ss_pred -ccceeccccccccccccccccc-eeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccc
Confidence 0011122233333333333222 12233445556666666666544 33344556666777777777655 55455666
Q ss_pred CCCCCCCCeEecCCCcccccCcccccCCCCCCeeeCCCCCCcchh
Q 035998 345 LPRCRKLKNINLARNNFSGQIPETYKNFESLSYLSLSNSSIYNLS 389 (1020)
Q Consensus 345 l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~i~~l~ 389 (1020)
|.++.+|+.+.+..+ +......+|.++.+|+.+.+.++.++.++
T Consensus 259 F~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~ 302 (379)
T 4h09_A 259 LQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLE 302 (379)
T ss_dssp TTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEEC
T ss_pred cceeehhcccccccc-ceeccccccccccccccccccccccceeh
Confidence 777777777777543 44455566777777777777666655443
No 411
>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}
Probab=98.86 E-value=5e-09 Score=117.53 Aligned_cols=142 Identities=14% Similarity=0.183 Sum_probs=106.7
Q ss_pred cCCeeeccCCeEEEEEEeCCCCEEEEEEec--CCc-hhhHHHHHHHHHHHHHcC--CCccceEeeEEecc---CceEEEE
Q 035998 746 QANIIGCGGFGLVYRATLPDGRNVAIKRLS--GDC-GQMEREFRAEVEALSRAQ--HPNLVHLQGYCMHK---NDRLLIY 817 (1020)
Q Consensus 746 ~~~~lg~G~~g~V~~~~~~~~~~vavK~~~--~~~-~~~~~~~~~E~~~l~~l~--h~niv~l~~~~~~~---~~~~lv~ 817 (1020)
..+.++.|.++.||++... +..+++|+.. ... ......+.+|+++++.+. +..+++++.++.+. +..++||
T Consensus 42 ~~~~l~~G~sn~~y~v~~~-~~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vm 120 (359)
T 3dxp_A 42 SVEQFKGGQSNPTFKLVTP-GQTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIM 120 (359)
T ss_dssp EEEECCC-CCSCEEEEECS-SCEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEE
T ss_pred eEEEcCCcccceEEEEEEC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEEE
Confidence 4567899999999999875 4688899876 322 122356888999999997 45578888888766 3479999
Q ss_pred EeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcC-----------------------------------
Q 035998 818 SFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSC----------------------------------- 862 (1020)
Q Consensus 818 e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~----------------------------------- 862 (1020)
||++|..+.+.. ...++..++..++.+++++|+.||+..
T Consensus 121 e~v~G~~l~~~~------~~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (359)
T 3dxp_A 121 EFVSGRVLWDQS------LPGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESI 194 (359)
T ss_dssp ECCCCBCCCCTT------CTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCC
T ss_pred EecCCeecCCCc------cccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcCC
Confidence 999998764311 124677888999999999999999721
Q ss_pred --------------------CCCeEecCCCCCCEEEcCCCC--eEEeecccccc
Q 035998 863 --------------------EPHILHRDIKSSNILLDGNFG--AHLADFGLARL 894 (1020)
Q Consensus 863 --------------------~~~ivH~Dlkp~NIll~~~~~--~kl~Dfg~~~~ 894 (1020)
.+.++|||+++.||+++.++. +.++||+.+..
T Consensus 195 ~~~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~ 248 (359)
T 3dxp_A 195 PAMDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL 248 (359)
T ss_dssp HHHHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred hHHHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence 247999999999999997753 68999998864
No 412
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Probab=98.78 E-value=3.5e-09 Score=115.83 Aligned_cols=186 Identities=22% Similarity=0.216 Sum_probs=121.5
Q ss_pred CCeeeccCCeEEEEEEeCCCCEEEEEEecCCchhhHHHHHHHHHHHHHcC-CCc--cceEeeEEeccC---ceEEEEEec
Q 035998 747 ANIIGCGGFGLVYRATLPDGRNVAIKRLSGDCGQMEREFRAEVEALSRAQ-HPN--LVHLQGYCMHKN---DRLLIYSFM 820 (1020)
Q Consensus 747 ~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~n--iv~l~~~~~~~~---~~~lv~e~~ 820 (1020)
.+.++.|....||++. ..+++|+.... .....+.+|+++++.+. +.. +.+++.+..... ..|+||||+
T Consensus 25 i~~~~~G~~n~v~~v~----~~~vlR~~~~~--~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~i 98 (304)
T 3sg8_A 25 IEISGEGNDCIAYEIN----RDFIFKFPKHS--RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKI 98 (304)
T ss_dssp CCEEEECSSEEEEEST----TSEEEEEESSH--HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEECC
T ss_pred eEecCCCCcceEEEEC----CEEEEEecCCc--chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEccc
Confidence 4679999999999864 56899986533 33467889999999884 333 334444332222 347899999
Q ss_pred cCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhc---------------------------------------
Q 035998 821 ENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQS--------------------------------------- 861 (1020)
Q Consensus 821 ~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~--------------------------------------- 861 (1020)
+|.++...... .++.+++..++.++++.++.||+.
T Consensus 99 ~G~~l~~~~~~------~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (304)
T 3sg8_A 99 KGVPLTPLLLN------NLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQMKK 172 (304)
T ss_dssp CCEECCHHHHH------TSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHHHHH
T ss_pred CCeECCccccc------cCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcccHHH
Confidence 99887653321 356777888888888888888861
Q ss_pred ----------------CCCCeEecCCCCCCEEEcC--CCCeEEeeccccccccCCCCccc-cccc---cc---------c
Q 035998 862 ----------------CEPHILHRDIKSSNILLDG--NFGAHLADFGLARLILSPYDTHV-TTDL---VG---------T 910 (1020)
Q Consensus 862 ----------------~~~~ivH~Dlkp~NIll~~--~~~~kl~Dfg~~~~~~~~~~~~~-~~~~---~g---------t 910 (1020)
..+.++|+|++|.||++++ +..+.++||+.+..- ++...-. .... .+ .
T Consensus 173 l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~-~~~~Dl~~~~~~~~~~~~~~~~~~l~~ 251 (304)
T 3sg8_A 173 VDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAIS-DPDNDFISLMEDDEEYGMEFVSKILNH 251 (304)
T ss_dssp HHHHHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEE-CTTHHHHTTCCTTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccC-ChHHHHHHHHhhccccCHHHHHHHHHH
Confidence 0136899999999999998 456789999998653 2211100 0000 00 0
Q ss_pred cCccC-ccccCCCCCCchhhHHHHHHHHHHHHcCCCCC
Q 035998 911 LGYIP-PEYGQASVATYKGDVYSFGVVLLELLTGKRPM 947 (1020)
Q Consensus 911 ~~y~a-PE~~~~~~~~~~~DvwSlGvil~elltg~~pf 947 (1020)
.++.. |+... ......+.|++|.++|.+.+|..+|
T Consensus 252 Y~~~~~~~~~~--r~~~~~~~~~l~~~~~~~~~g~~~~ 287 (304)
T 3sg8_A 252 YKHKDIPTVLE--KYRMKEKYWSFEKIIYGKEYGYMDW 287 (304)
T ss_dssp HTCSCHHHHHH--HHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cCCCCcHHHHH--HHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 01111 12110 1122368999999999999998775
No 413
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.77 E-value=9e-10 Score=122.47 Aligned_cols=60 Identities=18% Similarity=0.231 Sum_probs=31.3
Q ss_pred chhhhhhcccccccccccc-cCCCCCcccccCCCccEEEccCCcCcccCccccc--CCcccceeecc
Q 035998 222 ADDIFQLQKLRLLGLQDNQ-LSGKLSPSIADLSNLVRLDVSSNNFSGNIPDVFA--GLGEFQYLVAH 285 (1020)
Q Consensus 222 ~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~L~ 285 (1020)
...+..+++|+.|+|++|. ++ ++. +. +++|++|+|..|.++......+. .+++|+.|+|+
T Consensus 165 ~~ll~~~P~L~~L~L~g~~~l~--l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 165 SPVLDAMPLLNNLKIKGTNNLS--IGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHHHTCTTCCEEEEECCBTCB--CCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HHHHhcCCCCcEEEEeCCCCce--ecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 3444555666666666652 21 222 22 56677777766666543333332 45666666553
No 414
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.62 E-value=3.2e-10 Score=119.38 Aligned_cols=12 Identities=0% Similarity=-0.438 Sum_probs=10.1
Q ss_pred CCcCceEEcCCC
Q 035998 62 CCHWVGITCNSS 73 (1020)
Q Consensus 62 ~C~w~gv~C~~~ 73 (1020)
-|.|.|+.|+..
T Consensus 77 l~~~~g~i~~~~ 88 (267)
T 3rw6_A 77 LKAVNYKILDRE 88 (267)
T ss_dssp HHHTTSSCBCTT
T ss_pred HHhcCcEEECCC
Confidence 489999999864
No 415
>3r70_A Aminoglycoside phosphotransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE ADP PE3; 1.80A {Escherichia coli} PDB: 3r6z_A* 3uzr_A* 4dca_A* 3hav_A* 3ham_A*
Probab=98.47 E-value=7.8e-07 Score=97.75 Aligned_cols=136 Identities=17% Similarity=0.210 Sum_probs=101.1
Q ss_pred CCCcCCeeeccCCeEEEEEEeCCCCEEEEEEecCCchhhHHHHHHHHHHHHHcCC--C--ccceEeeEEeccCceEEEEE
Q 035998 743 NFDQANIIGCGGFGLVYRATLPDGRNVAIKRLSGDCGQMEREFRAEVEALSRAQH--P--NLVHLQGYCMHKNDRLLIYS 818 (1020)
Q Consensus 743 ~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h--~--niv~l~~~~~~~~~~~lv~e 818 (1020)
.+...+.++.|..+.||++ ++.+++|+.... .....+.+|+++++.+.+ . .+.+++++ +..++|||
T Consensus 38 ~i~~v~~l~~G~~n~vy~v----g~~~vlR~~~~~--~~~~~~~~E~~~L~~L~~~~~~~~vP~v~~~----~~~~lvme 107 (320)
T 3r70_A 38 KINELRYLSSGDDSDTFLC----NEQYVVKVPKRD--SVRISQKRELELYRFLENCKLSYQIPAVVYQ----SDRFNIMK 107 (320)
T ss_dssp CCSCEEEEEECSSEEEEEE----TTTEEEEEESSH--HHHHHHHHHHHHHHHHTTSCCSSBCCCEEEE----CSSCEEEE
T ss_pred ceEEEEeCCCCCCceEEEE----CCEEEEEeCCcH--HHHHHHHHHHHHHHHHHhcCCCCCcceEEec----CCcEEEEe
Confidence 4566788999999999998 677899987542 224568899999999866 2 23444444 56789999
Q ss_pred eccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCC-----------------------------------
Q 035998 819 FMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCE----------------------------------- 863 (1020)
Q Consensus 819 ~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~----------------------------------- 863 (1020)
|++|.++..... ..++..++..++.++++.++.||+...
T Consensus 108 ~i~G~~l~~~~~------~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (320)
T 3r70_A 108 YIKGERITYEQY------HKLSEKEKDALAYDEATFLKELHSIEIDCSVSLFSDALVNKKDKFLQDKKLLISILEKEQLL 181 (320)
T ss_dssp CCCCBCCCHHHH------TTSCHHHHHHHHHHHHHHHHHHHHSCCCTTSHHHHTTBCCHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ecCCcccccccc------ccCCHHHHHHHHHHHHHHHHHHhCCCcccCCCccccccccchHHHHHHHHHHHHHHhhcccc
Confidence 999988764322 134666777788888888888884321
Q ss_pred -------------------------CCeEecCCCCCCEEEcCCCCeEEeecccccc
Q 035998 864 -------------------------PHILHRDIKSSNILLDGNFGAHLADFGLARL 894 (1020)
Q Consensus 864 -------------------------~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~ 894 (1020)
+.++|+|++|.||+++.++.+.++||+.+..
T Consensus 182 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~D~~~~N~l~~~~~~~~~iD~~~~~~ 237 (320)
T 3r70_A 182 TDEMLEHIETIYENILSNAVLFKYTPCLVHNDFSANNMIFRNNRLFGVIDFGDFNV 237 (320)
T ss_dssp CHHHHHHHHHHHHHHHTCGGGTCCCCEEECSCCSGGGEEEETTEEEEECCCTTCEE
T ss_pred cccchHHHHHHHHHHHhccccccCCceeeECCCCCCcEEEECCceEEEECCccccc
Confidence 2459999999999999866679999999864
No 416
>3d1u_A Putative fructosamine-3-kinase; YP_290396.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Thermobifida fusca} PDB: 3f7w_A
Probab=98.34 E-value=2.8e-06 Score=91.30 Aligned_cols=76 Identities=24% Similarity=0.340 Sum_probs=60.3
Q ss_pred cCCeeeccCCeEEEEEEeCCCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCC---ccceEeeEEeccCceEEEEEeccC
Q 035998 746 QANIIGCGGFGLVYRATLPDGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHP---NLVHLQGYCMHKNDRLLIYSFMEN 822 (1020)
Q Consensus 746 ~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~---niv~l~~~~~~~~~~~lv~e~~~~ 822 (1020)
..+.++.|.++.||+++..+|+.++||+...........+.+|++.++.+.+. .+++++++. ..++||||+++
T Consensus 19 ~~~~l~gG~~n~vy~v~~~dG~~~vvK~~~~~~~~~~~~~~~E~~~L~~L~~~~~v~vP~v~~~~----~~~lvme~l~g 94 (288)
T 3d1u_A 19 AVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAMEWVDE 94 (288)
T ss_dssp EEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEEECCCC
T ss_pred ceeeeCCcchhheEEEEeCCCCeEEEEecCCCCcchhHHHHHHHHHHHHHHhcCCCCcCeEEEec----CcEEEEEeccc
Confidence 35679999999999999888999999996543222335789999999999765 466777653 46899999999
Q ss_pred CCh
Q 035998 823 GSL 825 (1020)
Q Consensus 823 g~L 825 (1020)
+.+
T Consensus 95 ~~~ 97 (288)
T 3d1u_A 95 RPP 97 (288)
T ss_dssp CCC
T ss_pred CCC
Confidence 875
No 417
>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*
Probab=98.25 E-value=5.6e-06 Score=90.10 Aligned_cols=136 Identities=16% Similarity=0.112 Sum_probs=94.7
Q ss_pred CCeeeccCCeEEEEEEeCCCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCC---ccceEeeEEe-ccCceEEEEEeccC
Q 035998 747 ANIIGCGGFGLVYRATLPDGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHP---NLVHLQGYCM-HKNDRLLIYSFMEN 822 (1020)
Q Consensus 747 ~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~---niv~l~~~~~-~~~~~~lv~e~~~~ 822 (1020)
.+.++.|....||+. ++.+++|+... ......+.+|+++++.+.+. .+.+++.+.. ..+..++||||++|
T Consensus 24 v~~l~~G~~n~v~~v----g~~~VlR~~~~--~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i~G 97 (306)
T 3tdw_A 24 VESLGEGFRNYAILV----NGDWVFRFPKS--QQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKVQG 97 (306)
T ss_dssp EEEEEECSSEEEEEE----TTTEEEEEESS--HHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECCCS
T ss_pred eeecCCCcceeEEEE----CCEEEEEecCC--chHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEeccCC
Confidence 456889999999988 56788898532 23456788999999999653 3556666664 34567899999999
Q ss_pred CChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhc-----------------------------------------
Q 035998 823 GSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQS----------------------------------------- 861 (1020)
Q Consensus 823 g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~----------------------------------------- 861 (1020)
..+...... .++..+...++.++++.|+.||+.
T Consensus 98 ~~l~~~~~~------~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l~~~~~~~ 171 (306)
T 3tdw_A 98 QILGEDGMA------VLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLDESLRDY 171 (306)
T ss_dssp EECHHHHHT------TSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGSCHHHHHH
T ss_pred eECchhhhh------hCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhcccccchhhHHH
Confidence 887653211 123444455555555555555532
Q ss_pred ----------------CCCCeEecCCCCCCEEEcC---CCCe-EEeecccccc
Q 035998 862 ----------------CEPHILHRDIKSSNILLDG---NFGA-HLADFGLARL 894 (1020)
Q Consensus 862 ----------------~~~~ivH~Dlkp~NIll~~---~~~~-kl~Dfg~~~~ 894 (1020)
..+.++|+|++|.||+++. ++.+ .|+||+.+..
T Consensus 172 l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~ 224 (306)
T 3tdw_A 172 LTLRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAI 224 (306)
T ss_dssp HHHHHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEE
T ss_pred HHHHHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCC
Confidence 2336799999999999987 4554 7999998764
No 418
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.25 E-value=2e-07 Score=97.96 Aligned_cols=92 Identities=17% Similarity=0.193 Sum_probs=51.1
Q ss_pred ccccccccc--ccccccccc---cccchhhhhhcccccccccccccCC--CCCcccccCCCccEEEccCCcCcccCcccc
Q 035998 201 LGNCASLEH--LCLGMNDLT---GGIADDIFQLQKLRLLGLQDNQLSG--KLSPSIADLSNLVRLDVSSNNFSGNIPDVF 273 (1020)
Q Consensus 201 l~~l~~L~~--L~L~~N~l~---~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 273 (1020)
|...+.|.. ++++.|... ..++....++++|+.|+|++|+|++ .+|..+..+++|+.|+|++|+|++. ..+
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l 214 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--REL 214 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhh
Confidence 344455555 556666433 1122222346677777777777776 3345566777777777777777654 223
Q ss_pred cCCc--ccceeecccccccccCC
Q 035998 274 AGLG--EFQYLVAHSNRFTGRIP 294 (1020)
Q Consensus 274 ~~l~--~L~~L~L~~N~l~~~~p 294 (1020)
..+. +|+.|+|++|.+.+.+|
T Consensus 215 ~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 215 DKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp GGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhcccCCcceEEccCCcCccccC
Confidence 3332 55666666666554433
No 419
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.24 E-value=1.9e-07 Score=93.51 Aligned_cols=43 Identities=12% Similarity=0.049 Sum_probs=27.0
Q ss_pred hhhcCCCCcEEec--cccccccc----ccccccCcCcCcEEeCCCCccc
Q 035998 443 WLRGCSKLQLVDL--SWNQLSGT----IPVWFGGFQDLFYLDLSNNTFT 485 (1020)
Q Consensus 443 ~l~~l~~L~~L~L--s~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~ 485 (1020)
.+...+.|++|+| ++|.|+.. +...+...+.|++|+|++|.+.
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3445566777777 66777643 2334445567777777777765
No 420
>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*
Probab=98.22 E-value=7.8e-06 Score=87.32 Aligned_cols=135 Identities=19% Similarity=0.176 Sum_probs=97.8
Q ss_pred CeeeccCCe-EEEEEEeC-CCCEEEEEEecCCchhhHHHHHHHHHHHHHcC-CCccceEeeEEeccCceEEEEEeccCCC
Q 035998 748 NIIGCGGFG-LVYRATLP-DGRNVAIKRLSGDCGQMEREFRAEVEALSRAQ-HPNLVHLQGYCMHKNDRLLIYSFMENGS 824 (1020)
Q Consensus 748 ~~lg~G~~g-~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e~~~~g~ 824 (1020)
+.+..|..| .||+.... ++..+++|+-.. .....+.+|++.++.+. +-.+.++++++.+.+..++|||+++|.+
T Consensus 30 ~~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~---~~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G~~ 106 (272)
T 4gkh_A 30 ARDNVGQSGATIYRLYGKPNAPELFLKHGKG---SVANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPGKT 106 (272)
T ss_dssp EEEECSSSSCEEEEEECCTTCCCEEEEEEET---HHHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCSEE
T ss_pred EEccCCCcCCeEEEEEecCCCeEEEEEECCC---CCHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCCcc
Confidence 345566666 68988764 466799998653 23457888999999884 3346788888888889999999999988
Q ss_pred hhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcC------------------------------------------
Q 035998 825 LDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSC------------------------------------------ 862 (1020)
Q Consensus 825 L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~------------------------------------------ 862 (1020)
+.+..... ......++.+++..++.||...
T Consensus 107 ~~~~~~~~--------~~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (272)
T 4gkh_A 107 AFQVLEEY--------PDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWPVEQ 178 (272)
T ss_dssp HHHHHHHC--------GGGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTCCHHH
T ss_pred ccccccCC--------HHHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccchHHHH
Confidence 76654321 1223455666667777777421
Q ss_pred -------------CCCeEecCCCCCCEEEcCCCCeEEeeccccc
Q 035998 863 -------------EPHILHRDIKSSNILLDGNFGAHLADFGLAR 893 (1020)
Q Consensus 863 -------------~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~ 893 (1020)
.+.++|+|+.+.||++++++.+-|+||+.+.
T Consensus 179 ~~~~l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~ 222 (272)
T 4gkh_A 179 VWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVG 222 (272)
T ss_dssp HHHHHHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCE
T ss_pred HHHHHHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECcccc
Confidence 1238999999999999987777799999875
No 421
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.13 E-value=2.5e-07 Score=92.61 Aligned_cols=65 Identities=15% Similarity=0.250 Sum_probs=31.2
Q ss_pred ccccccccccccccccccc----chhhhhhcccccccccccccCCC----CCcccccCCCccEEEc--cCCcCcc
Q 035998 203 NCASLEHLCLGMNDLTGGI----ADDIFQLQKLRLLGLQDNQLSGK----LSPSIADLSNLVRLDV--SSNNFSG 267 (1020)
Q Consensus 203 ~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L--s~N~l~~ 267 (1020)
..++|++|+|++|.|+... ...+...++|++|+|++|+|+.. +..++...++|++|+| ++|.|+.
T Consensus 63 ~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~ 137 (185)
T 1io0_A 63 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGN 137 (185)
T ss_dssp TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCH
Confidence 3445555555555554322 22223334555555555555432 2334444455666666 5555553
No 422
>3ovc_A Hygromycin-B 4-O-kinase; aminoglycoside phosphotransferase, structural genomics, PSI- protein structure initiative; HET: HY0 PE4; 1.95A {Escherichia coli} PDB: 3tyk_A*
Probab=98.10 E-value=1.2e-05 Score=89.72 Aligned_cols=145 Identities=13% Similarity=0.113 Sum_probs=91.8
Q ss_pred CCcCCeeeccCCeEEEEEEeCCCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCc--cceEeeEEecc-CceEEEEEec
Q 035998 744 FDQANIIGCGGFGLVYRATLPDGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPN--LVHLQGYCMHK-NDRLLIYSFM 820 (1020)
Q Consensus 744 ~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~l~~~~~~~-~~~~lv~e~~ 820 (1020)
....+.++.|....+|+.+. +++.+++|..... ..+.+|+.+++.+.... +.+++.++... ...++||||+
T Consensus 43 ~~~i~~l~gG~~n~~y~v~~-~g~~~vlK~~~~~-----~~~~~E~~~l~~L~~~gvpvP~vl~~~~~~~g~~~lv~e~l 116 (362)
T 3ovc_A 43 VSDLMQLSEGEESRAFSFDV-GGRGYVLRVNSCA-----DGFYKDRYVYRHFASAALPIPEVLDIGEFSESLTYCISRRA 116 (362)
T ss_dssp CEEEEEEEECSSEEEEEEEE-TTEEEEEEEESCC-----HHHHHHHHHHHHHCCSSSCCCCEEEEEESSSSCEEEEEECC
T ss_pred CceEEECCCCCcceEEEEEE-CCcEEEEEeCCch-----hhHHHHHHHHHHHHhcCCCCceEEEeccCCCCCeEEEEEec
Confidence 33457789999999999986 5788999987543 25788999999986544 45677766654 5689999999
Q ss_pred cCCChhhh------------------hhhcCCCC----------C---CCCHHHH---------------------HHHH
Q 035998 821 ENGSLDYW------------------LHEKLDGP----------S---SLDWDSR---------------------LHIA 848 (1020)
Q Consensus 821 ~~g~L~~~------------------l~~~~~~~----------~---~l~~~~~---------------------~~i~ 848 (1020)
+|..+.+. ++...... . .-+|... ....
T Consensus 117 ~G~~l~~l~~~~~~~~~~~lg~~La~LH~~~~~~~~gl~~~~~~~~~~~~~w~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 196 (362)
T 3ovc_A 117 QGVTLQDLPETELPAVLQPVAEAMDAIAAADLSQTSGFGPFGPQGIGQYTTWRDFICAIADPHVYHWQTVMDDTVSASVA 196 (362)
T ss_dssp CSEETTTSCGGGSGGGHHHHHHHHHHHHHCCCTTCBCEEEECTTSBEEESSHHHHHHGGGCTTTCCHHHHCCTTTHHHHH
T ss_pred CCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCccccCccCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHhhcccccch
Confidence 98765321 11110000 0 0011111 0111
Q ss_pred HHHHHHHHHhHhc-CCCCeEecCCCCCCEEEcCCCCeEEeecccccc
Q 035998 849 QGAARGLAYLHQS-CEPHILHRDIKSSNILLDGNFGAHLADFGLARL 894 (1020)
Q Consensus 849 ~~i~~~L~~LH~~-~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~ 894 (1020)
..+....+++... ..+.++|+|+++.||++++++.+.|+||+.+..
T Consensus 197 ~~~~~l~~~l~~lp~~~~l~HgDl~~~Nil~~~~~~~~viD~~~~~~ 243 (362)
T 3ovc_A 197 QALDELMLWAEDCPEVRHLVHADFGSNNVLTDNGRITAVIDWSEAMF 243 (362)
T ss_dssp HHHHHHHHHGGGCCCCCEEECSSCSSTTEEEETTEEEEECCCTTCEE
T ss_pred HHHHHHHHHHhhCCCCcEEEeCCCCCCeEEEeCCCEEEEECCccccc
Confidence 1222222333211 024789999999999998877788999998865
No 423
>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*
Probab=98.07 E-value=4.5e-06 Score=93.23 Aligned_cols=80 Identities=5% Similarity=-0.042 Sum_probs=56.0
Q ss_pred CCee-eccCCeEEEEEEeC-------CCCEEEEEEecCCch--h-hHHHHHHHHHHHHHcC-C--CccceEeeEEecc--
Q 035998 747 ANII-GCGGFGLVYRATLP-------DGRNVAIKRLSGDCG--Q-MEREFRAEVEALSRAQ-H--PNLVHLQGYCMHK-- 810 (1020)
Q Consensus 747 ~~~l-g~G~~g~V~~~~~~-------~~~~vavK~~~~~~~--~-~~~~~~~E~~~l~~l~-h--~niv~l~~~~~~~-- 810 (1020)
.+.| +.|....+|+.... +++.+++|+...... . ....+.+|+++++.+. + -.+.+++.++.+.
T Consensus 25 ~~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~ 104 (357)
T 3ats_A 25 ESGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDV 104 (357)
T ss_dssp EEEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTT
T ss_pred EEECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCc
Confidence 3567 88999999998754 267899998654320 0 1245778899988884 3 3467788777654
Q ss_pred -CceEEEEEeccCCChh
Q 035998 811 -NDRLLIYSFMENGSLD 826 (1020)
Q Consensus 811 -~~~~lv~e~~~~g~L~ 826 (1020)
...++||||++|..+.
T Consensus 105 ~g~~~~v~e~l~G~~l~ 121 (357)
T 3ats_A 105 LGTPFFLMDYVEGVVPP 121 (357)
T ss_dssp TSSCEEEEECCCCBCCC
T ss_pred cCCceEEEEecCCCChh
Confidence 3568999999987654
No 424
>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}
Probab=97.82 E-value=7.4e-05 Score=82.68 Aligned_cols=141 Identities=21% Similarity=0.294 Sum_probs=80.8
Q ss_pred CeeeccCCeEEEEEEeCCCCEEEEEEecCCchhhHHHHHHHHHHHHHcCC--CccceEee------EEeccCceEEEEEe
Q 035998 748 NIIGCGGFGLVYRATLPDGRNVAIKRLSGDCGQMEREFRAEVEALSRAQH--PNLVHLQG------YCMHKNDRLLIYSF 819 (1020)
Q Consensus 748 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h--~niv~l~~------~~~~~~~~~lv~e~ 819 (1020)
+.++.|..+.||++...+| .+++|+.... ...+..|+++++.+.. -.+.+++. +....+..+++|||
T Consensus 38 ~~l~gG~~n~~~~v~~~~~-~~vlk~~~~~----~~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l~~~ 112 (346)
T 2q83_A 38 DVIQGNQMALVWKVHTDSG-AVCLKRIHRP----EKKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVVYDW 112 (346)
T ss_dssp EECC----CEEEEEEETTE-EEEEEEECSC----HHHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEEEEC
T ss_pred eeccccccCcEEEEEeCCC-CEEEEecCCC----HHHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEEEe
Confidence 4566678899999987654 5899998763 2334455666655531 12333332 12235567899999
Q ss_pred ccCCChh--------------hhhhhcCCC---C-------CCCCHHHH-------------------------------
Q 035998 820 MENGSLD--------------YWLHEKLDG---P-------SSLDWDSR------------------------------- 844 (1020)
Q Consensus 820 ~~~g~L~--------------~~l~~~~~~---~-------~~l~~~~~------------------------------- 844 (1020)
++|..+. ..++..... + ....|...
T Consensus 113 i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 192 (346)
T 2q83_A 113 IEGRPFELTVKQDLEFIMKGLADFHTASVGYQPPNGVPIFTKLGRWPNHYTKRCKQMETWKLMAEAEKEDPFSQLYLQEI 192 (346)
T ss_dssp CCCBCCCTTSHHHHHHHHHHHHHHHHHHTTCCCCTTCCCCBCTTCHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred ecCccCCCCCHHHHHHHHHHHHHHHHhCCCCCCCccchhcccccchHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 9986542 011111110 1 01123211
Q ss_pred HHHHHHHHHHHHHhHh----------cCCCCeEecCCCCCCEEEcCCCCeEEeeccccc
Q 035998 845 LHIAQGAARGLAYLHQ----------SCEPHILHRDIKSSNILLDGNFGAHLADFGLAR 893 (1020)
Q Consensus 845 ~~i~~~i~~~L~~LH~----------~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~ 893 (1020)
..+..++..++++|++ ...+.++|||+++.||+++.++.+.++||+.+.
T Consensus 193 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~ 251 (346)
T 2q83_A 193 DGFIEDGLRIKDRLLQSTYVPWTEQLKKSPNLCHQDYGTGNTLLGENEQIWVIDLDTVS 251 (346)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHSCCEECSSCSTTSEEECGGGCEEECCCTTCE
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHhccccCceecCCCCcccEEEeCCCcEEEEehhhcc
Confidence 1111224446666763 124589999999999999888889999999875
No 425
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=97.74 E-value=8.9e-05 Score=79.79 Aligned_cols=79 Identities=23% Similarity=0.352 Sum_probs=58.3
Q ss_pred CCCcCCeeeccCCeEEEEEEeCCCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCC---ccceEeeEEeccCceEEEEEe
Q 035998 743 NFDQANIIGCGGFGLVYRATLPDGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHP---NLVHLQGYCMHKNDRLLIYSF 819 (1020)
Q Consensus 743 ~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~---niv~l~~~~~~~~~~~lv~e~ 819 (1020)
.....+.+|.|..+.||+.+..||+.|++|+...........+.+|++.|+.+... .+++++++ +..++||||
T Consensus 16 ~v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~----~~~~lv~e~ 91 (288)
T 3f7w_A 16 EVAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGW----DDRTLAMEW 91 (288)
T ss_dssp CEEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEE----ETTEEEEEC
T ss_pred CeEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEec----cCceEEEEe
Confidence 34456779999999999999999999999987655444445688999999988432 23444443 234789999
Q ss_pred ccCCCh
Q 035998 820 MENGSL 825 (1020)
Q Consensus 820 ~~~g~L 825 (1020)
++++..
T Consensus 92 l~~~~~ 97 (288)
T 3f7w_A 92 VDERPP 97 (288)
T ss_dssp CCCCCC
T ss_pred ecccCC
Confidence 987643
No 426
>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}
Probab=97.71 E-value=0.00018 Score=77.78 Aligned_cols=140 Identities=15% Similarity=0.170 Sum_probs=93.1
Q ss_pred cCCeeeccCCeEEEEEEeCCCCEEEEEEecCCchhhHHHHHHHHHHHHHcC---CCccceEeeEEeccCceEEEEEeccC
Q 035998 746 QANIIGCGGFGLVYRATLPDGRNVAIKRLSGDCGQMEREFRAEVEALSRAQ---HPNLVHLQGYCMHKNDRLLIYSFMEN 822 (1020)
Q Consensus 746 ~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~---h~niv~l~~~~~~~~~~~lv~e~~~~ 822 (1020)
..+.|+.|....+|+... +++.+++|+.... ....+.+|++.++.+. ...+++++.++...+..++||||+++
T Consensus 40 ~~~~l~gG~~n~~y~v~~-~~~~~vlK~~~~~---~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l~G 115 (312)
T 3jr1_A 40 HKEKLYSGEMNEIWLIND-EVQTVFVKINERS---YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEALNK 115 (312)
T ss_dssp EEEEECCSSSSEEEEEES-SSCEEEEEEEEGG---GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECCCC
T ss_pred eeEEeCCccceeeeEEEE-CCCeEEEEeCCcc---cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEeccC
Confidence 346789999999999986 4778999987643 2456889999998884 35688888888877889999999998
Q ss_pred CChhh-----------hhhhcCC-C-----------------CCCCCHHHHH---HHH----------------HHHHHH
Q 035998 823 GSLDY-----------WLHEKLD-G-----------------PSSLDWDSRL---HIA----------------QGAARG 854 (1020)
Q Consensus 823 g~L~~-----------~l~~~~~-~-----------------~~~l~~~~~~---~i~----------------~~i~~~ 854 (1020)
..+.. .++.... . ...-+|.... ++. ..+...
T Consensus 116 ~~~~~~~~~~lG~~LA~LH~~~~~~~fG~~~~~~~G~~~q~n~w~~~W~~f~~~~Rl~~~l~~a~~~g~~~~~~~~l~~~ 195 (312)
T 3jr1_A 116 SKNKQSSFTIFAEKIAQLHQIQGPDKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLIFGNIDLIVQI 195 (312)
T ss_dssp CCCCTTHHHHHHHHHHHHHHCCCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHTHHHHHHHHHHHTCCCSCHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCcCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 76521 1222111 0 0012454321 011 111111
Q ss_pred -HHHhHh-cCCCCeEecCCCCCCEEEcCCCCeEEeecc
Q 035998 855 -LAYLHQ-SCEPHILHRDIKSSNILLDGNFGAHLADFG 890 (1020)
Q Consensus 855 -L~~LH~-~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg 890 (1020)
...|.. ...+.+||+|+.+.|++++.++ +.|.||.
T Consensus 196 l~~~L~~~~~~~~l~HgD~~~~N~l~~~~~-~~~iD~~ 232 (312)
T 3jr1_A 196 VADTLSKHNPKPSILHGNLWIENCIQVDDK-IFVCNPA 232 (312)
T ss_dssp HHHHHTTCCCCCEEECSSCSGGGEEEETTE-EEECSCC
T ss_pred HHHHhccCCCCceeEeCCCCcCcEeecCCC-eEEEcCc
Confidence 223321 2246899999999999999887 8899974
No 427
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*
Probab=97.67 E-value=0.00014 Score=82.21 Aligned_cols=75 Identities=17% Similarity=0.146 Sum_probs=49.6
Q ss_pred CCeeeccCCeEEEEEEeC-CCCEEEEEEecCCch-------hhHHHHHHHHHHHHHcCC--Cc-cceEeeEEeccCceEE
Q 035998 747 ANIIGCGGFGLVYRATLP-DGRNVAIKRLSGDCG-------QMEREFRAEVEALSRAQH--PN-LVHLQGYCMHKNDRLL 815 (1020)
Q Consensus 747 ~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~-------~~~~~~~~E~~~l~~l~h--~n-iv~l~~~~~~~~~~~l 815 (1020)
.+.+|.|..+.||++... +++.|+||....... .....+..|+++++.+.. +. +.+++.+ +.+..++
T Consensus 35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~~l 112 (397)
T 2olc_A 35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVT 112 (397)
T ss_dssp EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEE
T ss_pred EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCccEE
Confidence 467899999999999754 468899998653221 112346778999888742 33 3455543 4456789
Q ss_pred EEEeccCC
Q 035998 816 IYSFMENG 823 (1020)
Q Consensus 816 v~e~~~~g 823 (1020)
||||+++.
T Consensus 113 vmE~l~g~ 120 (397)
T 2olc_A 113 VMEDLSHL 120 (397)
T ss_dssp EECCCTTS
T ss_pred EEEeCCCc
Confidence 99999764
No 428
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.41 E-value=2.2e-05 Score=76.29 Aligned_cols=88 Identities=10% Similarity=0.151 Sum_probs=58.3
Q ss_pred cccccccccccccccccccCCCCCCCcCEEEcCCCc-cCCCCCCCCCCC----CCCCeEecCCCc-ccccCcccccCCCC
Q 035998 301 PTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTNK-FNGPLPTNLPRC----RKLKNINLARNN-FSGQIPETYKNFES 374 (1020)
Q Consensus 301 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l----~~L~~L~L~~N~-l~~~~p~~~~~l~~ 374 (1020)
..|+.||++++.++......+..+++|++|+|+++. |++..-..++.+ ++|++|+|++|. ++...-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 356777777777665555556677777777777774 554333334443 368888888874 77655566777888
Q ss_pred CCeeeCCCCC-Ccch
Q 035998 375 LSYLSLSNSS-IYNL 388 (1020)
Q Consensus 375 L~~L~l~~N~-i~~l 388 (1020)
|++|++++++ ++..
T Consensus 141 L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 141 LKYLFLSDLPGVKEK 155 (176)
T ss_dssp CCEEEEESCTTCCCH
T ss_pred CCEEECCCCCCCCch
Confidence 8888888874 5543
No 429
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}
Probab=97.39 E-value=0.00061 Score=77.57 Aligned_cols=77 Identities=10% Similarity=0.117 Sum_probs=47.7
Q ss_pred CCCeEecCCCCCCEEEcCCCCeEEeeccccccccCCCCccccccccc--ccCccCccccCCC---CCCchhhHHHHHHHH
Q 035998 863 EPHILHRDIKSSNILLDGNFGAHLADFGLARLILSPYDTHVTTDLVG--TLGYIPPEYGQAS---VATYKGDVYSFGVVL 937 (1020)
Q Consensus 863 ~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g--t~~y~aPE~~~~~---~~~~~~DvwSlGvil 937 (1020)
.+.++|||++|.||+++.++ ++++||+.+..- ++...- ..... ...|.+|+..... ......++......+
T Consensus 231 ~~~liHGDl~~~Nil~~~~~-~~lID~e~a~~G-~p~~Dl--a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (420)
T 2pyw_A 231 AQALIHGDLHTGSVMVTQDS-TQVIDPEFSFYG-PMGFDI--GAYLGNLILAFFAQDGHATQENDRKEYKQWILRTIEQT 306 (420)
T ss_dssp CCEEECSCCSGGGEEECSSC-EEECCCTTCEEE-CHHHHH--HHHHHHHHHHHHHGGGGCCSSCCSHHHHHHHHHHHHHH
T ss_pred CCeEEecCCCCCcEEEeCCC-CEEEeCcccccC-chHHHH--HHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHH
Confidence 34899999999999999876 999999988642 111000 00010 1345666544311 223345566788888
Q ss_pred HHHHcC
Q 035998 938 LELLTG 943 (1020)
Q Consensus 938 ~elltg 943 (1020)
|+.+++
T Consensus 307 ~~~y~~ 312 (420)
T 2pyw_A 307 WNLFNK 312 (420)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887765
No 430
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.30 E-value=3.3e-05 Score=75.15 Aligned_cols=35 Identities=11% Similarity=0.047 Sum_probs=19.2
Q ss_pred CCccEEEccCCcCcccCcccccCCcccceeecccc
Q 035998 253 SNLVRLDVSSNNFSGNIPDVFAGLGEFQYLVAHSN 287 (1020)
Q Consensus 253 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 287 (1020)
.+|++||++++.++..--..+.++++|+.|+|++|
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 35666666666665444344445555555555554
No 431
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}
Probab=97.27 E-value=0.00073 Score=73.08 Aligned_cols=71 Identities=11% Similarity=0.098 Sum_probs=46.0
Q ss_pred CCeeeccCCeEEEEEEeCCCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCcc-ceEeeEEeccCceEEEEEec-cCCC
Q 035998 747 ANIIGCGGFGLVYRATLPDGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNL-VHLQGYCMHKNDRLLIYSFM-ENGS 824 (1020)
Q Consensus 747 ~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ni-v~l~~~~~~~~~~~lv~e~~-~~g~ 824 (1020)
.+.|+.|....+|++ +.+++|+....... .....+|+++++.+...++ .+++++ +.+..++++||+ +|.+
T Consensus 23 i~~l~gG~tN~~~~~-----~~~vlR~~~~~~~~-~~~r~~E~~~l~~l~~~g~~P~~~~~--~~~~~~~v~e~i~~g~~ 94 (301)
T 3dxq_A 23 PLERLGGLTNLVFRA-----GDLCLRIPGKGTEE-YINRANEAVAAREAAKAGVSPEVLHV--DPATGVMVTRYIAGAQT 94 (301)
T ss_dssp CEEEESCSSEEEEEE-----TTEEEEEECC-----CCCHHHHHHHHHHHHHTTSSCCEEEE--CTTTCCEEEECCTTCEE
T ss_pred eeEcCCcccccccee-----eeEEEECCCCCccc-eeCHHHHHHHHHHHHHcCCCCceEEE--ECCCCEEEEeecCCCcc
Confidence 678999999999998 56889988653211 1123568888877743333 355543 444567899999 6654
Q ss_pred h
Q 035998 825 L 825 (1020)
Q Consensus 825 L 825 (1020)
+
T Consensus 95 l 95 (301)
T 3dxq_A 95 M 95 (301)
T ss_dssp C
T ss_pred C
Confidence 4
No 432
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8
Probab=97.17 E-value=0.0012 Score=75.09 Aligned_cols=73 Identities=15% Similarity=0.171 Sum_probs=50.6
Q ss_pred CCeeeccCCeEEEEEEeCC--------CCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCcc-ceEeeEEeccCceEEEE
Q 035998 747 ANIIGCGGFGLVYRATLPD--------GRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNL-VHLQGYCMHKNDRLLIY 817 (1020)
Q Consensus 747 ~~~lg~G~~g~V~~~~~~~--------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ni-v~l~~~~~~~~~~~lv~ 817 (1020)
.+.|+.|....||++...+ ++.+++|+.... .....+.+|..+++.+...++ .++++.+.+ .+|+
T Consensus 78 v~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~--~~~~~li~E~~~l~~L~~~g~~P~l~~~~~~----g~v~ 151 (429)
T 1nw1_A 78 ISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNP--ETESHLVAESVIFTLLSERHLGPKLYGIFSG----GRLE 151 (429)
T ss_dssp EEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSC--CCHHHHHHHHHHHHHHHHTTSSSCEEEEETT----EEEE
T ss_pred EEEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCC--CcHHHHHHHHHHHHHHHhCCCCCcEEEEeCC----CEEE
Confidence 4568889999999998753 578999998542 112345579999988853333 566665542 3899
Q ss_pred EeccCCCh
Q 035998 818 SFMENGSL 825 (1020)
Q Consensus 818 e~~~~g~L 825 (1020)
||++|.++
T Consensus 152 e~l~G~~l 159 (429)
T 1nw1_A 152 EYIPSRPL 159 (429)
T ss_dssp CCCCEEEC
T ss_pred EEeCCccc
Confidence 99987544
No 433
>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6
Probab=97.14 E-value=0.0025 Score=69.55 Aligned_cols=160 Identities=14% Similarity=0.117 Sum_probs=88.0
Q ss_pred ccHHHHHHhccCCCc-----CCeeeccCCeEEEEEEeCCCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCc--cceEe
Q 035998 732 ISIDDILESTNNFDQ-----ANIIGCGGFGLVYRATLPDGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPN--LVHLQ 804 (1020)
Q Consensus 732 ~~~~~~~~~~~~~~~-----~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~l~ 804 (1020)
++.+++...-.+|.. .+.|+.|....+|+....+| .+++|...... ....+..|+++++.+...+ +.+++
T Consensus 7 ~~~~~l~~~l~~~~~~~~~~~~~i~~G~~n~~~~v~~~~g-~~vlk~~~~~~--~~~~l~~e~~~l~~L~~~g~~vP~~~ 83 (322)
T 2ppq_A 7 ITEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTTKD-PLILTLYEKRV--EKNDLPFFLGLMQHLAAKGLSCPLPL 83 (322)
T ss_dssp CCHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEESSC-CEEEEEECC-----CCHHHHHHHHHHHHHHTTCCCCCBC
T ss_pred CCHHHHHHHHHhCCCCcceEeeccCCCcccceEEEEeCCc-cEEEEEeCCCC--CHHHHHHHHHHHHHHHHCCCCCCccc
Confidence 444555555455654 24567788899999987655 68899887531 1234566788877774222 23333
Q ss_pred eE------EeccCceEEEEEeccCCChhh--------------hhhhcC---CCCC--CC---CHHHHHH----------
Q 035998 805 GY------CMHKNDRLLIYSFMENGSLDY--------------WLHEKL---DGPS--SL---DWDSRLH---------- 846 (1020)
Q Consensus 805 ~~------~~~~~~~~lv~e~~~~g~L~~--------------~l~~~~---~~~~--~l---~~~~~~~---------- 846 (1020)
.. ....+..+++|+|++|..+.. .++... .... .. .|.....
T Consensus 84 ~~~~g~~~~~~~g~~~~l~~~l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 163 (322)
T 2ppq_A 84 PRKDGELLGELSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVE 163 (322)
T ss_dssp CBTTCCSCEEETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGTS
T ss_pred CCCCCCEEEEECCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHhhh
Confidence 21 112345689999999865321 011110 0010 01 1222110
Q ss_pred --HHHHHHHHHHHhHhc----CCCCeEecCCCCCCEEEcCCCCeEEeecccccc
Q 035998 847 --IAQGAARGLAYLHQS----CEPHILHRDIKSSNILLDGNFGAHLADFGLARL 894 (1020)
Q Consensus 847 --i~~~i~~~L~~LH~~----~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~ 894 (1020)
+...+...++++++. .+.+++|+|+.+.||++++++.+.++||+.+..
T Consensus 164 ~~l~~~l~~~~~~l~~~~~~~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~~ 217 (322)
T 2ppq_A 164 KGLREEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFACN 217 (322)
T ss_dssp TTHHHHHHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCEE
T ss_pred hhhHHHHHHHHHHHHhhCcccCCcccCCCCCCccCEEEeCCceEEEecchhccC
Confidence 011234455555532 134799999999999999876668999997753
No 434
>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*
Probab=97.13 E-value=0.0014 Score=72.81 Aligned_cols=143 Identities=17% Similarity=0.169 Sum_probs=84.3
Q ss_pred CCeeeccCCeEEEEEEeC--------CCCEEEEEEecCCchhhHHHHHHHHHHHHHcC-CCccceEeeEEeccCceEEEE
Q 035998 747 ANIIGCGGFGLVYRATLP--------DGRNVAIKRLSGDCGQMEREFRAEVEALSRAQ-HPNLVHLQGYCMHKNDRLLIY 817 (1020)
Q Consensus 747 ~~~lg~G~~g~V~~~~~~--------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~lv~ 817 (1020)
.+.+..|-...+|++... +++.|++|+..... .....+.+|.++++.+. +.-..++++++.+ .+||
T Consensus 55 v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~~-~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~~----g~v~ 129 (379)
T 3feg_A 55 VYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAIL-QGVDSLVLESVMFAILAERSLGPQLYGVFPE----GRLE 129 (379)
T ss_dssp CEEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC----CCHHHHHHHHHHHHHHHHTTSSCCEEEEETT----EEEE
T ss_pred EEEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCcc-chHHHHHHHHHHHHHHHhcCCCCeEEEEcCC----ccEE
Confidence 356777888999999874 25789999864321 22455678999998884 3333566666543 2899
Q ss_pred EeccCCChhhh--------------h---hhc-CCCCCCCC--HHHHHHHHHHHHH-------------------HHHHh
Q 035998 818 SFMENGSLDYW--------------L---HEK-LDGPSSLD--WDSRLHIAQGAAR-------------------GLAYL 858 (1020)
Q Consensus 818 e~~~~g~L~~~--------------l---~~~-~~~~~~l~--~~~~~~i~~~i~~-------------------~L~~L 858 (1020)
||++|..+..- + +.. ........ +.++.++..++.. .+..|
T Consensus 130 e~i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L 209 (379)
T 3feg_A 130 QYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGNL 209 (379)
T ss_dssp ECCSEEECCGGGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTHHHHHHHH
T ss_pred EEecCccCChhHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHHHHHHHHH
Confidence 99998655311 1 111 01111222 3455555544322 12333
Q ss_pred H----hc-CCCCeEecCCCCCCEEEcCC----CCeEEeecccccc
Q 035998 859 H----QS-CEPHILHRDIKSSNILLDGN----FGAHLADFGLARL 894 (1020)
Q Consensus 859 H----~~-~~~~ivH~Dlkp~NIll~~~----~~~kl~Dfg~~~~ 894 (1020)
. .. ....++|+|+.+.||+++.+ +.+.++||..+..
T Consensus 210 ~~~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~~ 254 (379)
T 3feg_A 210 RKLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSSY 254 (379)
T ss_dssp HHHHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCEE
T ss_pred HHHHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCCc
Confidence 2 11 13478999999999999876 7899999998754
No 435
>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}
Probab=97.05 E-value=0.0012 Score=72.62 Aligned_cols=142 Identities=14% Similarity=0.122 Sum_probs=74.1
Q ss_pred CeeeccCCeE-EEEEEeCCCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCC--ccceEeeEEeccCceEEEEEeccCCC
Q 035998 748 NIIGCGGFGL-VYRATLPDGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHP--NLVHLQGYCMHKNDRLLIYSFMENGS 824 (1020)
Q Consensus 748 ~~lg~G~~g~-V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~--niv~l~~~~~~~~~~~lv~e~~~~g~ 824 (1020)
+.++.|+... +|+....+++.+++|....... ..+..|+++++.+... .+.+++.+.. +..+++||++.+..
T Consensus 24 ~~l~gg~s~~~~~r~~~~~~~~~vlk~~~~~~~---~~~~~e~~~l~~L~~~g~~vP~v~~~d~--~~g~ll~e~l~~~~ 98 (333)
T 3csv_A 24 TPLAGDASSRRYQRLRSPTGAKAVLMDWSPEEG---GDTQPFVDLAQYLRNLDISAPEIYAEEH--ARGLLLIEDLGDAL 98 (333)
T ss_dssp CC--------CCEEEECTTCCEEEEEECCTTTT---CCSHHHHHHHHHHHHTTCBCCCEEEEET--TTTEEEECCCCSCB
T ss_pred eECCCCCCCceEEEEEcCCCCeEEEEECCCCCC---ccccHHHHHHHHHHhCCCCCCceeeecC--CCCEEEEeeCCCcc
Confidence 4566665554 6677654477888886544321 2345677777776422 3455666533 23378999998766
Q ss_pred hhhhhhhc---------------------CC-CCCCCCHHHHH-------H-H------------HHHHHHHHHHhHh--
Q 035998 825 LDYWLHEK---------------------LD-GPSSLDWDSRL-------H-I------------AQGAARGLAYLHQ-- 860 (1020)
Q Consensus 825 L~~~l~~~---------------------~~-~~~~l~~~~~~-------~-i------------~~~i~~~L~~LH~-- 860 (1020)
+.+++... .. ....++..... . + ...+...++.+.+
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~ 178 (333)
T 3csv_A 99 FTEVINNDPAQEMPLYRAAVDLLIHLHDAQTPELARLDPETLSEMTRLAFSEYRYAILGDAAEDNRKRFEHRFAQILSAQ 178 (333)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHHHHHTSCCCCCCBCCHHHHHHTTTHHHHTHHHHHHSSCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhcCCCccHHHHHHHHHHHHHHHhcCCCccCCccCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhc
Confidence 65433210 00 00112211100 0 0 0111122222211
Q ss_pred -cCCCCeEecCCCCCCEEEcCC----CCeEEeecccccc
Q 035998 861 -SCEPHILHRDIKSSNILLDGN----FGAHLADFGLARL 894 (1020)
Q Consensus 861 -~~~~~ivH~Dlkp~NIll~~~----~~~kl~Dfg~~~~ 894 (1020)
...+.++|||+.+.||+++.+ +.+.++||+.+..
T Consensus 179 ~~~~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~ 217 (333)
T 3csv_A 179 LEGDMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKL 217 (333)
T ss_dssp CCSCCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEE
T ss_pred ccCCCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCc
Confidence 123489999999999999875 6789999998864
No 436
>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6
Probab=96.91 E-value=0.0057 Score=66.81 Aligned_cols=143 Identities=13% Similarity=0.147 Sum_probs=82.4
Q ss_pred CeeeccCCeEEEEEEeCCCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCc--cceEeeE-----EeccCceEEEEEec
Q 035998 748 NIIGCGGFGLVYRATLPDGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPN--LVHLQGY-----CMHKNDRLLIYSFM 820 (1020)
Q Consensus 748 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~l~~~-----~~~~~~~~lv~e~~ 820 (1020)
+.++ |....||++...+|+.+++|....... ....+..|.++++.+.... +++++.. ....+..+++|||+
T Consensus 32 ~~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~~-~~~~~~~E~~~~~~L~~~g~~vp~~~~~~g~~~~~~~g~~~~l~~~i 109 (328)
T 1zyl_A 32 TPLN-SYENRVYQFQDEDRRRFVVKFYRPERW-TADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSV 109 (328)
T ss_dssp EEEC-CSSSEEEEECCTTCCCEEEEEECTTTS-CHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECC
T ss_pred Eeec-CcccceEEEEcCCCCEEEEEEcCCCCC-CHHHHHHHHHHHHHHHHcCCeecceeecCCcEEEEECCEEEEEEEec
Confidence 4566 888899998877777899999864321 2346677888888774222 3444432 11234557899999
Q ss_pred cCCChhh-----------h---hhhcCC-----CCCCCCHHHH----HHH---------------HHHHHHHHHHhHhc-
Q 035998 821 ENGSLDY-----------W---LHEKLD-----GPSSLDWDSR----LHI---------------AQGAARGLAYLHQS- 861 (1020)
Q Consensus 821 ~~g~L~~-----------~---l~~~~~-----~~~~l~~~~~----~~i---------------~~~i~~~L~~LH~~- 861 (1020)
+|..+.. . ++.... .....++... ..+ ...+...++.+.+.
T Consensus 110 ~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 189 (328)
T 1zyl_A 110 GGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDATLIPSGLKAAFLKATDELIAAVTAHW 189 (328)
T ss_dssp CCEECCSSCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHTCSSSCTTTHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCccCCCCCHHHHHhhHHHHHhhcCcCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 8854320 1 111100 0111222211 000 11111223333221
Q ss_pred ---CCCCeEecCCCCCCEEEcCCCCeEEeecccccc
Q 035998 862 ---CEPHILHRDIKSSNILLDGNFGAHLADFGLARL 894 (1020)
Q Consensus 862 ---~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~ 894 (1020)
....++|||+++.||+++ + .+.++||+.+..
T Consensus 190 ~~~~~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~~ 223 (328)
T 1zyl_A 190 REDFTVLRLHGDCHAGNILWR-D-GPMFVDLDDARN 223 (328)
T ss_dssp CSCSCCEECCSSCSGGGEEES-S-SEEECCCTTCCE
T ss_pred hhcCCeeeeeCCCCcccEeEc-C-CCEEEECCCCCc
Confidence 234689999999999999 4 899999988754
No 437
>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}
Probab=96.88 E-value=0.0032 Score=71.89 Aligned_cols=74 Identities=15% Similarity=0.103 Sum_probs=48.6
Q ss_pred CCeeeccCCeEEEEEEeCC-CCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCcc-ceEeeEEeccCceEEEEEeccCCC
Q 035998 747 ANIIGCGGFGLVYRATLPD-GRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNL-VHLQGYCMHKNDRLLIYSFMENGS 824 (1020)
Q Consensus 747 ~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ni-v~l~~~~~~~~~~~lv~e~~~~g~ 824 (1020)
.+.|+.|....+|++...+ +..+++|+........ ....+|..+++.+...++ .++++++. + .+||||++|.+
T Consensus 113 i~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~~~~-idR~~E~~vl~~L~~~gl~P~ll~~~~--~--G~v~e~I~G~~ 187 (458)
T 2qg7_A 113 FQIINGGITNILIKVKDMSKQAKYLIRLYGPKTDEI-INREREKKISCILYNKNIAKKIYVFFT--N--GRIEEFMDGYA 187 (458)
T ss_dssp EEEECC--CEEEEEEEETTTTEEEEEEEECC-CCSC-SCHHHHHHHHHHHTTSSSBCCEEEEET--T--EEEEECCCSEE
T ss_pred EEEcCCCeEeEEEEEEECCCCceEEEEECCCChhhh-cCHHHHHHHHHHHHhcCCCCCEEEEeC--C--eEEEEeeCCcc
Confidence 4568889999999998765 4788999875432111 112578999998865444 56666653 2 35999999755
Q ss_pred h
Q 035998 825 L 825 (1020)
Q Consensus 825 L 825 (1020)
+
T Consensus 188 l 188 (458)
T 2qg7_A 188 L 188 (458)
T ss_dssp C
T ss_pred C
Confidence 4
No 438
>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*
Probab=96.79 E-value=0.0023 Score=71.45 Aligned_cols=73 Identities=12% Similarity=0.095 Sum_probs=45.4
Q ss_pred CeeeccCCeEEEEEEeCC---------CCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCc-cceEeeEEeccCceEEEE
Q 035998 748 NIIGCGGFGLVYRATLPD---------GRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPN-LVHLQGYCMHKNDRLLIY 817 (1020)
Q Consensus 748 ~~lg~G~~g~V~~~~~~~---------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n-iv~l~~~~~~~~~~~lv~ 817 (1020)
+.++.|....+|++...+ ++.+++|+........ .....|.++++.+...+ ..++++.. .-++||
T Consensus 39 ~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~~~~-~~~~~E~~~l~~L~~~g~~P~~~~~~----~~~~v~ 113 (369)
T 3c5i_A 39 KQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHVDEL-YNTISEFEVYKTMSKYKIAPQLLNTF----NGGRIE 113 (369)
T ss_dssp EEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTGGGT-SCHHHHHHHHHHHHHTTSSCCEEEEE----TTEEEE
T ss_pred EEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCccce-ecHHHHHHHHHHHHhcCCCCceEEec----CCcEEE
Confidence 457788889999998754 2789999876543221 12467888888875333 44666543 237899
Q ss_pred EeccCCCh
Q 035998 818 SFMENGSL 825 (1020)
Q Consensus 818 e~~~~g~L 825 (1020)
||++|..+
T Consensus 114 e~i~G~~l 121 (369)
T 3c5i_A 114 EWLYGDPL 121 (369)
T ss_dssp ECCCSEEC
T ss_pred EEecCCcC
Confidence 99988643
No 439
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.65 E-value=0.00036 Score=69.15 Aligned_cols=61 Identities=10% Similarity=0.167 Sum_probs=26.2
Q ss_pred CCCCcCEEEcCCCccCCCCCCC----CCCCCCCCeEecCCCcccccC----cccccCCCCCCeeeCCCC
Q 035998 323 ALTNLTSLDLGTNKFNGPLPTN----LPRCRKLKNINLARNNFSGQI----PETYKNFESLSYLSLSNS 383 (1020)
Q Consensus 323 ~l~~L~~L~L~~N~l~~~~p~~----l~~l~~L~~L~L~~N~l~~~~----p~~~~~l~~L~~L~l~~N 383 (1020)
.-+.|+.|+|++|+|....... +..-+.|+.|+|++|.|.... -+++..-+.|++|+|++|
T Consensus 68 ~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 68 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 3345555555555554322222 223344555555555554321 122333344555555443
No 440
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.51 E-value=0.004 Score=57.52 Aligned_cols=56 Identities=21% Similarity=0.333 Sum_probs=39.3
Q ss_pred EEEcCCCccC-CCCCCCCCCCCCCCeEecCCCcccccCcccccCCCCCCeeeCCCCCCc
Q 035998 329 SLDLGTNKFN-GPLPTNLPRCRKLKNINLARNNFSGQIPETYKNFESLSYLSLSNSSIY 386 (1020)
Q Consensus 329 ~L~L~~N~l~-~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~i~ 386 (1020)
.++.+++.++ ..+|..+. .+|+.|+|++|+|+...+..|..+++|++|+|++|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5667777765 34555443 45777888888887666677777888888888888765
No 441
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.50 E-value=0.00044 Score=68.50 Aligned_cols=59 Identities=19% Similarity=0.249 Sum_probs=25.3
Q ss_pred ccccccccccccccccc----chhhhhhcccccccccccccCCC----CCcccccCCCccEEEccCC
Q 035998 205 ASLEHLCLGMNDLTGGI----ADDIFQLQKLRLLGLQDNQLSGK----LSPSIADLSNLVRLDVSSN 263 (1020)
Q Consensus 205 ~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N 263 (1020)
+.|++|+|++|+|+... .+.+..-+.|++|+|+.|+|+.. +..++..-+.|++|+|++|
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 44555555555544222 22222334455555555555421 1122233344556666543
No 442
>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*
Probab=96.44 E-value=0.0092 Score=65.49 Aligned_cols=68 Identities=13% Similarity=0.142 Sum_probs=43.6
Q ss_pred eccCCeEEEEEEeCCCCEEEEEEecCCchhhHHHHHHHHHHHHHcC---CCccceEeeE------EeccCceEEEEEecc
Q 035998 751 GCGGFGLVYRATLPDGRNVAIKRLSGDCGQMEREFRAEVEALSRAQ---HPNLVHLQGY------CMHKNDRLLIYSFME 821 (1020)
Q Consensus 751 g~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~---h~niv~l~~~------~~~~~~~~lv~e~~~ 821 (1020)
|.|....||+....+| .+++|+...... .+|+++++.+. -|.+++++.. ....+..+++|||++
T Consensus 32 G~g~~N~vy~v~~~~g-~~vLK~~~~~~~------~~E~~~l~~L~~~g~~~vp~pi~~~~G~~~~~~~g~~~~l~~~i~ 104 (339)
T 3i1a_A 32 GADTNAFAYQADSESK-SYFIKLKYGYHD------EINLSIIRLLHDSGIKEIIFPIHTLEAKLFQQLKHFKIIAYPFIH 104 (339)
T ss_dssp TSCSSCEEEEEECSSC-EEEEEEEECSSC------CHHHHHHHHHHHTTCCSSCCCCCCTTSCSSEECSSEEEEEEECCC
T ss_pred cCccccceEEEEeCCC-CEEEEEecCccc------hHHHHHHHHHHhcCCcccccceecCCCCEEEEECCEEEEEEeccC
Confidence 3344689999987766 899998876432 34566665552 2324444432 223456789999999
Q ss_pred CCCh
Q 035998 822 NGSL 825 (1020)
Q Consensus 822 ~g~L 825 (1020)
|..+
T Consensus 105 G~~~ 108 (339)
T 3i1a_A 105 APNG 108 (339)
T ss_dssp CCBT
T ss_pred CCcC
Confidence 8765
No 443
>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A
Probab=96.31 E-value=0.045 Score=54.37 Aligned_cols=101 Identities=15% Similarity=0.100 Sum_probs=66.9
Q ss_pred ChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCCEEEcCCCCeEEeeccccccccCCCCccc
Q 035998 824 SLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDGNFGAHLADFGLARLILSPYDTHV 903 (1020)
Q Consensus 824 ~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~ 903 (1020)
+|.+.|..+ +.+++++++|.++.|.+.+|.-.-.... . ..+=+.|..|++..+|.|.+.+ +.+.
T Consensus 34 SL~eIL~~~---~~PlsEEqaWALc~Qc~~~L~~~~~~~~-~-~~~i~~~~~i~l~~dG~V~f~~-~~s~---------- 97 (229)
T 2yle_A 34 SLEEILRLY---NQPINEEQAWAVCYQCCGSLRAAARRRQ-P-RHRVRSAAQIRVWRDGAVTLAP-AADD---------- 97 (229)
T ss_dssp EHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHHHHTTC-C-CCCCCSGGGEEEETTSCEEECC-C-------------
T ss_pred cHHHHHHHc---CCCcCHHHHHHHHHHHHHHHHhhhhccc-C-CceecCCcceEEecCCceeccc-cccc----------
Confidence 788888765 4689999999999999999877632111 1 1333457899999999998764 1110
Q ss_pred ccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCC
Q 035998 904 TTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKR 945 (1020)
Q Consensus 904 ~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~ 945 (1020)
.....+.|||... ...+.+.-|||+|+++|.-+--..
T Consensus 98 ----~~~~~~~~pe~~~-~~~te~~~IysLG~tLY~ALDygL 134 (229)
T 2yle_A 98 ----AGEPPPVAGKLGY-SQCMETEVIESLGIIIYKALDYGL 134 (229)
T ss_dssp -------------CCSS-SSSCHHHHHHHHHHHHHHHHTTTC
T ss_pred ----ccccCCCChhhcc-ccchHHHHHHHHHHHHHHHhhcCC
Confidence 1122567888753 456789999999999999887333
No 444
>3f2s_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics consortium, SGC, hemicholinium-3, alternative splicing, cytoplasm; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 3g15_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=96.30 E-value=0.015 Score=64.75 Aligned_cols=143 Identities=17% Similarity=0.176 Sum_probs=83.8
Q ss_pred CeeeccCCeEEEEEEeCC--------CCEEEEEEecCCchh----------hH--------HHHHHHHHHHHHcC-CCcc
Q 035998 748 NIIGCGGFGLVYRATLPD--------GRNVAIKRLSGDCGQ----------ME--------REFRAEVEALSRAQ-HPNL 800 (1020)
Q Consensus 748 ~~lg~G~~g~V~~~~~~~--------~~~vavK~~~~~~~~----------~~--------~~~~~E~~~l~~l~-h~ni 800 (1020)
+.|..|-...+|++..++ ++.|.+++.-..... .. .....|.++++.+. +.-.
T Consensus 58 ~~l~gGlTN~~~~v~~~~~~~~~~~~~~~~llRi~G~~te~~~~~~~~~~~idR~~~~~~~~~~~~E~~~l~~L~~~Gi~ 137 (401)
T 3f2s_A 58 SVIRGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGAILQMRSCNKEGSEQAQKENEFQGAEAMVLESVMFAILAERSLG 137 (401)
T ss_dssp EEEECSSEEEEEEEECCTTCCCSSSCCSEEEEEEEEC-----------------------CHHHHHHHHHHHHHHHTTSS
T ss_pred EEcCCCccCceEEEEeCCCcccccCCCccEEEEeCCCCcccccccccccchhhhhhhhccchhhHHHHHHHHHHHhcCCC
Confidence 456678888999998754 368899987543211 00 12234888888884 4445
Q ss_pred ceEeeEEeccCceEEEEEeccCCChhh--h------------hhhc----CCCCCCCC--HHHHHHHHHHHH--------
Q 035998 801 VHLQGYCMHKNDRLLIYSFMENGSLDY--W------------LHEK----LDGPSSLD--WDSRLHIAQGAA-------- 852 (1020)
Q Consensus 801 v~l~~~~~~~~~~~lv~e~~~~g~L~~--~------------l~~~----~~~~~~l~--~~~~~~i~~~i~-------- 852 (1020)
.++++++... +|+||++|.+|.. + +++. ........ +....++..++.
T Consensus 138 Pkl~~~~~~G----~i~efI~G~~L~~~dl~~p~~~~~iA~~L~~LH~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~ 213 (401)
T 3f2s_A 138 PKLYGIFPQG----RLEQFIPSRRLDTEELSLPDISAEIAEKMATFHGMKMPFNKEPKWLFGTMEKYLKEVLRIKFTEES 213 (401)
T ss_dssp CCEEEEETTE----EEEECCCEEECCGGGGGSHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSHH
T ss_pred CeEEEEeCCC----eEEEecCCccCCHHHHhhHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhccCcchh
Confidence 6777776432 8999999765531 1 1110 01111222 234444443321
Q ss_pred --------------HHH----HHhHhc-CCCCeEecCCCCCCEEEcCC------CCeEEeecccccc
Q 035998 853 --------------RGL----AYLHQS-CEPHILHRDIKSSNILLDGN------FGAHLADFGLARL 894 (1020)
Q Consensus 853 --------------~~L----~~LH~~-~~~~ivH~Dlkp~NIll~~~------~~~kl~Dfg~~~~ 894 (1020)
..+ +++... ....++|+|+.+.||+++.+ +.+.++||..+..
T Consensus 214 ~~~~~~~~~~~~l~~e~~~l~~~l~~~~~~~v~~H~Dl~~~Nil~~~~~~~~~~~~~~lID~E~a~~ 280 (401)
T 3f2s_A 214 RIKKLHKLLSYNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY 280 (401)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSCCCEEEECSCCCGGGEEEETTGGGCSSSCEEECCCTTCEE
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhhcCCCeeEEeccCCcccEEEcCCcccCcccceEEEeeccCCc
Confidence 112 222221 13368999999999999877 7899999998753
No 445
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.92 E-value=0.0091 Score=55.10 Aligned_cols=37 Identities=30% Similarity=0.266 Sum_probs=29.2
Q ss_pred CCcEEecCCCCCCCCCCccccCCCCCCeeeccCCCCC
Q 035998 110 QLRFLNLSHNLLKGTVPVSLVNLPNLEVLDLSSNDLS 146 (1020)
Q Consensus 110 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 146 (1020)
+|++|+|++|+|+..-+..|..+++|++|+|++|.+.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5778888888888555566788888888888888775
No 446
>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}
Probab=95.19 E-value=0.047 Score=61.37 Aligned_cols=142 Identities=11% Similarity=0.131 Sum_probs=85.4
Q ss_pred CCeeeccCCeEEEEEEeCC--------CCEEEEEEecCCchhhHHHHHHHHHHHHHcC-CCccceEeeEEeccCceEEEE
Q 035998 747 ANIIGCGGFGLVYRATLPD--------GRNVAIKRLSGDCGQMEREFRAEVEALSRAQ-HPNLVHLQGYCMHKNDRLLIY 817 (1020)
Q Consensus 747 ~~~lg~G~~g~V~~~~~~~--------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~lv~ 817 (1020)
.+.+..|-...+|+....+ ++.|++|+....... ..+..+|.++++.+. +.-..++++.+. -+.||
T Consensus 75 v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t~~-~idR~~E~~~l~~L~~~gi~P~l~~~~~----~~~I~ 149 (424)
T 3mes_A 75 VKQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHVGK-FYDSKVELDVFRYLSNINIAPNIIADFP----EGRIE 149 (424)
T ss_dssp EEEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCCC-C-CCCHHHHHHHHHHHHHTTSSCCEEEEET----TEEEE
T ss_pred EEEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCCcch-hcCHHHHHHHHHHHHhcCCCCCEEEEcC----CCEEE
Confidence 4567788899999998753 578999987543211 123457888888884 333445555332 37899
Q ss_pred EeccCCChhh--------------hh---hhc-C-----C---CCCCCCHHHHHHHHHHHH-------------------
Q 035998 818 SFMENGSLDY--------------WL---HEK-L-----D---GPSSLDWDSRLHIAQGAA------------------- 852 (1020)
Q Consensus 818 e~~~~g~L~~--------------~l---~~~-~-----~---~~~~l~~~~~~~i~~~i~------------------- 852 (1020)
||++|..+.. .+ +.. . . ...+.-+.++.++..++-
T Consensus 150 efI~G~~l~~~~l~~~~~~~~ia~~La~LH~~~~~~~~L~~~~~~~p~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~ 229 (424)
T 3mes_A 150 EFIDGEPLTTKQLQLTHICVEVAKNMGSLHIINSKRADFPSRFDKEPILFKRIYLWREEAKIQVSKNNFQIDKELYSKIL 229 (424)
T ss_dssp ECCCSEECCTGGGGSHHHHHHHHHHHHHHHTHHHHCTTSCTTSCCSCCHHHHHHHHHHHHHHHHHTCC--CCHHHHHHHH
T ss_pred EEeCCccCChhhcCCHHHHHHHHHHHHHHhcCchhhccCccccCCCCcHHHHHHHHHHHHHHhhcccchhhccccHHHHH
Confidence 9999876421 00 000 0 1 111222444444433321
Q ss_pred HHHHHhHh---------------------cCCCCeEecCCCCCCEEEcCCCCeEEeecccccc
Q 035998 853 RGLAYLHQ---------------------SCEPHILHRDIKSSNILLDGNFGAHLADFGLARL 894 (1020)
Q Consensus 853 ~~L~~LH~---------------------~~~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~ 894 (1020)
..+..|.+ ..+..++|+|+.+.||+ +.++.+.++||..+..
T Consensus 230 ~e~~~L~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~H~D~~~~N~l-~~~~~~~~IDwe~a~~ 291 (424)
T 3mes_A 230 EEIDQLEELIMGGEKFSMERALELKLYSPAFSLVFAHNDLQENNLL-QTQNNIRMIDYEYSAI 291 (424)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHTTCGGGCEEEECSCCCGGGEE-ECSSCEEECCCTTCEE
T ss_pred HHHHHHHHHHhhhcccccccccccccccCCCCceEECCCCCcccee-cCCCcEEEEecccCCc
Confidence 12233221 11236899999999999 8888999999998864
No 447
>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=92.82 E-value=0.52 Score=52.66 Aligned_cols=30 Identities=30% Similarity=0.386 Sum_probs=25.2
Q ss_pred CeEecCCCCCCEEE------cCCCCeEEeecccccc
Q 035998 865 HILHRDIKSSNILL------DGNFGAHLADFGLARL 894 (1020)
Q Consensus 865 ~ivH~Dlkp~NIll------~~~~~~kl~Dfg~~~~ 894 (1020)
.++|+|+.+.||++ +.+..++++||.+|..
T Consensus 245 vfcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~~ 280 (401)
T 3g15_A 245 VFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY 280 (401)
T ss_dssp EEECSCCCGGGEEEETTGGGCSSCCEEECCCTTCEE
T ss_pred eeEEecCCCCeEEEecCcccCcCCeEEEechHhccC
Confidence 46799999999999 3466799999998864
No 448
>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}
Probab=83.54 E-value=4.2 Score=40.30 Aligned_cols=116 Identities=8% Similarity=0.079 Sum_probs=77.3
Q ss_pred CCCccceEeeEEeccCceEEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcCCCCeEecCCCCCC
Q 035998 796 QHPNLVHLQGYCMHKNDRLLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLAYLHQSCEPHILHRDIKSSN 875 (1020)
Q Consensus 796 ~h~niv~l~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~N 875 (1020)
.||+.++. .+-.+++...+.++.-+ +...|-.- ...+...+++++.+|+...++++.. +|--+.|+|
T Consensus 43 ~~~~Fl~~-~I~e~eD~v~~~y~~~~--~~~~f~~i-----k~~~~~eKlr~l~ni~~l~~~~~~r-----~tf~L~P~N 109 (215)
T 4ann_A 43 HSPYFIDA-ELTELRDSFQIHYDIND--NHTPFDNI-----KSFTKNEKLRYLLNIKNLEEVNRTR-----YTFVLAPDE 109 (215)
T ss_dssp CCTTBCCE-EEEECSSEEEEEECCCT--TSEEGGGG-----GGSCHHHHHHHHHHGGGGGGGGGSS-----EECCCSGGG
T ss_pred cCCcccce-EEEEcccEEEEEEEcCc--ccCCHHHH-----HhcCHHHHHHHHHHHHHHHHHhcCc-----eEEEEecce
Confidence 58888866 45555665555555433 22222221 2457889999999999988776644 888999999
Q ss_pred EEEcCCCCeEEeeccccccccCCCCcccccccccccCccCccccCCCCCCchhhHHHHHHHHHHHHcCCCCCC
Q 035998 876 ILLDGNFGAHLADFGLARLILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMD 948 (1020)
Q Consensus 876 Ill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltg~~pf~ 948 (1020)
|+++.++.+++.=.|+-.. ++|. ..+...=.-.+=+++..+++++..|.
T Consensus 110 L~f~~~~~p~i~~RGik~~-------------------l~P~-----~~~ee~fL~qyKAliiall~~K~~Fe 158 (215)
T 4ann_A 110 LFFTRDGLPIAKTRGLQNV-------------------VDPL-----PVSEAEFLTRYKALVICAFNEKQSFD 158 (215)
T ss_dssp EEECTTSCEEESCCEETTT-------------------BSCC-----CCCHHHHHHHHHHHHHHHHCTTCCHH
T ss_pred EEEcCCCCEEEEEccCccC-------------------CCCC-----CCCHHHHHHHHHHHHHHHHcCCCCHH
Confidence 9999999999976665322 2222 12222233447788889999999885
No 449
>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}
Probab=77.94 E-value=10 Score=37.62 Aligned_cols=113 Identities=12% Similarity=0.159 Sum_probs=75.2
Q ss_pred CCCccceEeeEEeccCceEEEEEeccCC-ChhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHH-HhHhcCCCCeEecCCCC
Q 035998 796 QHPNLVHLQGYCMHKNDRLLIYSFMENG-SLDYWLHEKLDGPSSLDWDSRLHIAQGAARGLA-YLHQSCEPHILHRDIKS 873 (1020)
Q Consensus 796 ~h~niv~l~~~~~~~~~~~lv~e~~~~g-~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~-~LH~~~~~~ivH~Dlkp 873 (1020)
.||++ -..+-.+++...+.++.-+++ ++. .++ ..+...+++.+.+|+.... +++. -+|--+.|
T Consensus 48 ~~~~f--~~~I~~~eD~~~i~y~~~~~~~~f~-~i~-------~~~~~eKlrll~nl~~L~~~~~~~-----r~tf~l~P 112 (219)
T 4ano_A 48 VDPCI--VRDIDVSEDEVKVVIKPPSSFLTFA-AIR-------KTTLLSRIRAAIHLVSKVKHHSAR-----RLIFIVCP 112 (219)
T ss_dssp SCSSS--EEEEEECSSEEEEEEECCTTCEEHH-HHH-------TSCHHHHHHHHHHHHHHHSSCCSS-----SEECCCCG
T ss_pred cCCCC--CeEEEEeCCEEEEEEEcCcccCcHH-HHH-------hcCHHHHHHHHHHHHHHHHHhhhC-----ceeEEEeC
Confidence 68888 444445666666666654333 222 222 4578899999999988777 6664 48888999
Q ss_pred CCEEEcCCCCeEEeeccccccccCCCCcccccccccccCccCccccCCCCCCchhhH-HHHHHHHHHHHcCCCCCC
Q 035998 874 SNILLDGNFGAHLADFGLARLILSPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDV-YSFGVVLLELLTGKRPMD 948 (1020)
Q Consensus 874 ~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv-wSlGvil~elltg~~pf~ 948 (1020)
+||+++.++.+++.-.|+-. -++|.- .+ ..|. -.+=+++..++.++..|.
T Consensus 113 ~NL~f~~~~~p~i~hRGi~~-------------------~lpP~e-----~~-ee~fl~qyKali~all~~K~~Fe 163 (219)
T 4ano_A 113 ENLMFNRALEPFFLHVGVKE-------------------SLPPDE-----WD-DERLLREVKATVLALTEGEYRFD 163 (219)
T ss_dssp GGEEECTTCCEEESCCEETT-------------------TBSSCS-----CC-HHHHHHHHHHHHHHHTTCSSCHH
T ss_pred ceEEEeCCCcEEEEEcCCcc-------------------cCCCCC-----CC-HHHHHHHHHHHHHHHHcCCCCHH
Confidence 99999999999998666532 223332 12 2333 346777888888888774
No 450
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=70.87 E-value=0.82 Score=32.39 Aligned_cols=10 Identities=10% Similarity=0.242 Sum_probs=4.2
Q ss_pred HHHhhhcccc
Q 035998 688 FMILLRAHSR 697 (1020)
Q Consensus 688 ~~~~~~~~~~ 697 (1020)
+++++|++++
T Consensus 31 ~~~~~RRr~~ 40 (44)
T 2ks1_B 31 IGLFMRRRHI 40 (44)
T ss_dssp HHHHHHTTTC
T ss_pred HHHHhhhhHh
Confidence 3344444433
No 451
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=68.34 E-value=0.46 Score=32.59 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=12.2
Q ss_pred ceEEEEEEehhhhhHHHHHHHHHH
Q 035998 666 KYTIVGMAIGITFGSAFLLILIFM 689 (1020)
Q Consensus 666 ~~~i~~~~i~~~~~~~~~~~~~~~ 689 (1020)
...+.++++|.+++++++.+++++
T Consensus 10 ~GaIAGiVvG~v~gv~li~~l~~~ 33 (38)
T 2k1k_A 10 GGEIVAVIFGLLLGAALLLGILVF 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceeeeehHHHHHHHHHHHHHHH
Confidence 334555666655555554444443
No 452
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=65.89 E-value=0.85 Score=51.89 Aligned_cols=60 Identities=10% Similarity=0.070 Sum_probs=17.9
Q ss_pred cCCeeeccCCeEEEEEEeCC-CCEEEE------EEecCCch--hhHHHHHHHHHHHHHcCCCccceEeeEEe
Q 035998 746 QANIIGCGGFGLVYRATLPD-GRNVAI------KRLSGDCG--QMEREFRAEVEALSRAQHPNLVHLQGYCM 808 (1020)
Q Consensus 746 ~~~~lg~G~~g~V~~~~~~~-~~~vav------K~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~ 808 (1020)
+.+.+| ||.||+|.+.. ..+||| |..+.... .....+.+|..+++..+|||+++.+++..
T Consensus 146 l~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~ 214 (463)
T 3cxl_A 146 IYEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKV 214 (463)
T ss_dssp STTTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEEE
T ss_pred ccccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceEE
Confidence 456676 99999998753 467888 76554321 12245788999999999999999988765
No 453
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=65.14 E-value=3.8 Score=28.93 Aligned_cols=11 Identities=27% Similarity=0.458 Sum_probs=4.6
Q ss_pred HHHHhhhcccc
Q 035998 687 IFMILLRAHSR 697 (1020)
Q Consensus 687 ~~~~~~~~~~~ 697 (1020)
.+++++|++++
T Consensus 29 ~~~~~~RRRr~ 39 (44)
T 2l2t_A 29 TFAVYVRRKSI 39 (44)
T ss_dssp HHHHHHHTTCS
T ss_pred HHHHHhhhhhh
Confidence 33444444433
No 454
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=49.31 E-value=6.7 Score=27.78 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHHHhhhccccCCC
Q 035998 678 FGSAFLLILIFMILLRAHSRGEV 700 (1020)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~ 700 (1020)
++.+++++++...++-..++++.
T Consensus 18 VgGv~~~~ii~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 18 VGALLLLLVVALGIGLFMRRRHI 40 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hHHHHHHHHHHHHHHHHhhhhHh
Confidence 33344444445555555555443
No 455
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=39.21 E-value=14 Score=26.06 Aligned_cols=24 Identities=17% Similarity=0.396 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHHHhhhccccCCCC
Q 035998 678 FGSAFLLILIFMILLRAHSRGEVD 701 (1020)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~ 701 (1020)
++.+++++++...++-..++++.+
T Consensus 17 VgGv~~v~ii~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 17 IGGLFILVIVGLTFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhh
Confidence 344444455555555555555444
No 456
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*
Probab=33.45 E-value=6.5e+02 Score=29.52 Aligned_cols=25 Identities=32% Similarity=0.303 Sum_probs=23.1
Q ss_pred cCCCCCCEEEcCCCCeEEeeccccc
Q 035998 869 RDIKSSNILLDGNFGAHLADFGLAR 893 (1020)
Q Consensus 869 ~Dlkp~NIll~~~~~~kl~Dfg~~~ 893 (1020)
+|=.++|||++.+|++.=+|||.+-
T Consensus 551 GDRH~~NILid~tG~v~HIDFG~~f 575 (696)
T 2x6h_A 551 GDRHLDNLLLTTNGKLFHIDFGYIL 575 (696)
T ss_dssp CCCCTTTEEECTTSCEEECCCCSCT
T ss_pred CCCCCcceEEeCCCCEEEEeehhhh
Confidence 6889999999999999999999874
No 457
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=30.88 E-value=15 Score=25.51 Aligned_cols=12 Identities=33% Similarity=0.578 Sum_probs=5.5
Q ss_pred EehhhhhHHHHH
Q 035998 673 AIGITFGSAFLL 684 (1020)
Q Consensus 673 ~i~~~~~~~~~~ 684 (1020)
+++++.|+++++
T Consensus 16 ~~~vv~Gv~ll~ 27 (41)
T 2k9y_A 16 IGGVAVGVVLLL 27 (41)
T ss_dssp HHHHHHHHHHHH
T ss_pred EeehhHHHHHHH
Confidence 444444544444
No 458
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=28.66 E-value=7.2e+02 Score=28.58 Aligned_cols=85 Identities=12% Similarity=0.128 Sum_probs=49.5
Q ss_pred ceEeeEEeccCceEEEEEeccCCChh----------hhhhhcCCCCC---CCCHHHHHHHHHHHH--HHHHHhHhcCCCC
Q 035998 801 VHLQGYCMHKNDRLLIYSFMENGSLD----------YWLHEKLDGPS---SLDWDSRLHIAQGAA--RGLAYLHQSCEPH 865 (1020)
Q Consensus 801 v~l~~~~~~~~~~~lv~e~~~~g~L~----------~~l~~~~~~~~---~l~~~~~~~i~~~i~--~~L~~LH~~~~~~ 865 (1020)
++.|.+.......- +.|++++.++. +|+.+...... ...+..+..++...| ..+.|+= |
T Consensus 402 i~~Y~Vipls~~~G-lIE~V~~~tl~~il~~~~~l~~~f~~~~~~~~~~~~~~~~a~~nF~~S~A~ySvv~YIL-----G 475 (614)
T 3ls8_A 402 LTPYKVLATSTKHG-FMQFIQSVPVAEVLDTEGSIQNFFRKYAPSENGPNGISAEVMDTYVKSCAGYCVITYIL-----G 475 (614)
T ss_dssp CCCCCEEESSSSEE-EEECCCCEEHHHHHHHTSSHHHHHHHHSBCTTSGGGBCHHHHHHHHHHHHHHHHHHHHH-----T
T ss_pred eeccEEEEecCCCc-eEEEeCCccHHHHHHccChHHHHHHHhCCCccccccccHHHHHHHHHHHHHHhHhheee-----e
Confidence 44555555544433 46777654444 44433321111 123445555555543 3445554 2
Q ss_pred eEecCCCCCCEEEcCCCCeEEeeccccc
Q 035998 866 ILHRDIKSSNILLDGNFGAHLADFGLAR 893 (1020)
Q Consensus 866 ivH~Dlkp~NIll~~~~~~kl~Dfg~~~ 893 (1020)
| +|=.++|||++.+|++.=+|||.+-
T Consensus 476 i--gDRH~~NILld~tG~v~HIDFG~~f 501 (614)
T 3ls8_A 476 V--GDRHLDNLLLTKTGKLFHIDFGYIL 501 (614)
T ss_dssp C--CCCCTTSEEECTTSCEEECCCSSCT
T ss_pred c--cCCCCcceeEcCCCCEeeeehHHhh
Confidence 2 5888999999999999999999874
No 459
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=26.89 E-value=83 Score=26.66 Aligned_cols=44 Identities=14% Similarity=0.088 Sum_probs=20.5
Q ss_pred ccccccCCCCCCCcCEEEcCCCccCCCCCCCCCCCCCCCeEecCC
Q 035998 314 DGSLLLNCPALTNLTSLDLGTNKFNGPLPTNLPRCRKLKNINLAR 358 (1020)
Q Consensus 314 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~ 358 (1020)
+.+....|.++++|+.+.|-.+ ++.....+|.+|.+|+.+.+..
T Consensus 9 t~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 9 VGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred CEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3333444555555555555443 2223344455555555555543
No 460
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=26.19 E-value=3.7e+02 Score=33.33 Aligned_cols=25 Identities=28% Similarity=0.293 Sum_probs=22.9
Q ss_pred cCCCCCCEEEcCCCCeEEeeccccc
Q 035998 869 RDIKSSNILLDGNFGAHLADFGLAR 893 (1020)
Q Consensus 869 ~Dlkp~NIll~~~~~~kl~Dfg~~~ 893 (1020)
+|=.++|||++.+|++.=+|||.+-
T Consensus 937 gDRH~~NILid~tG~v~HIDFG~~f 961 (1091)
T 3hhm_A 937 GDRHNSNIMVKDDGQLFHIDFGHFL 961 (1091)
T ss_dssp CCCCTTTEEEETTSCEEECCCCCCS
T ss_pred cCCCCcceEEeCCCCEEEEeehhhh
Confidence 6888999999999999999999974
No 461
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=24.88 E-value=1.6e+02 Score=24.89 Aligned_cols=47 Identities=13% Similarity=0.039 Sum_probs=28.7
Q ss_pred cccccCCCCCcCCcccccccccccccccccccCCCCCCCcCEEEcCCC
Q 035998 288 RFTGRIPHSLSNSPTLNLLNLRNNSLDGSLLLNCPALTNLTSLDLGTN 335 (1020)
Q Consensus 288 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 335 (1020)
.++.+-..+|.++++|+.+.+-.+ ++.+....|.++.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 344455566666777777766654 44455556666777777766554
No 462
>1cja_A Protein (actin-fragmin kinase); transferase; HET: AMP; 2.90A {Physarum polycephalum} SCOP: d.144.1.3
Probab=24.37 E-value=1.2e+02 Score=31.92 Aligned_cols=140 Identities=14% Similarity=0.130 Sum_probs=68.2
Q ss_pred CCcCCeeeccCCeEEEEEEeCCCCEEEEEEecCCchhhHHHHHHHHHHHHHcCCCccceEeeE-----------------
Q 035998 744 FDQANIIGCGGFGLVYRATLPDGRNVAIKRLSGDCGQMEREFRAEVEALSRAQHPNLVHLQGY----------------- 806 (1020)
Q Consensus 744 ~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~----------------- 806 (1020)
+..++..-.|..| ||.+.. ++..|+||-.. ....+-+..++...=.+.-|+..-+.-.
T Consensus 71 v~~I~~s~~Gstg-vff~~t-d~~~~VVK~s~---~l~~E~l~s~LA~~LGlpiP~~Riv~~~~~E~~e~~~~L~~~~~~ 145 (342)
T 1cja_A 71 FKGIERSEKGTEG-LFFVET-ESGVFIVKRST---NIESETFCSLLCMRLGLHAPKVRVVSSNSEEGTNMLECLAAIDKS 145 (342)
T ss_dssp EEEEEECCSTTSC-EEEEEE-SSCEEEEECCT---THHHHHHHHHHHHHHTCCCCCEEEEESSSHHHHHHHHHHHHHCSS
T ss_pred eeEEEeccCCCCC-eEEEEe-CCCEEEEeCcH---HHHHHHHHHHHHHHhCCCCCCeeEEeeCcHHHHHHHHHHHHhhhh
Confidence 3344555666554 555544 57899999442 2222333334433333444442211100
Q ss_pred -----EeccCceEEEEEeccCCChhhhhhhcCCCCCCCCHHHHHHHHHHH--HHHHHHhHhcCCC-CeEe-cCCCCCCEE
Q 035998 807 -----CMHKNDRLLIYSFMENGSLDYWLHEKLDGPSSLDWDSRLHIAQGA--ARGLAYLHQSCEP-HILH-RDIKSSNIL 877 (1020)
Q Consensus 807 -----~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~l~~~~~~~i~~~i--~~~L~~LH~~~~~-~ivH-~Dlkp~NIl 877 (1020)
.......+++|||.+|..|.+.-.... ...+..+ .+.++ +-++..+..+..+ +.+. .-=.+.|||
T Consensus 146 ~~~l~~l~~~~~~l~meyv~G~~L~e~~~~~~--~~~f~~~----~~k~LG~Ii~FDi~InN~DR~Pl~W~n~GN~~NIL 219 (342)
T 1cja_A 146 FRVITTLANQANILLMELVRGITLNKLTTTSA--PEVLTKS----TMQQLGSLMALDVIVNNSDRLPIAWTNEGNLDNIM 219 (342)
T ss_dssp SCHHHHHTTCSEEEEEECCCEEESTTCCSSSH--HHHSCHH----HHHHHHHHHHHHHHHTCCSSSCSSSCSCCCGGGEE
T ss_pred hHHHHHhhcccceehhhhcCCCccccchhhhh--hhhcCHH----HHHhhchhheehhhhcCCccCcccccCCCChhheE
Confidence 001224569999999765543211100 0112222 22332 3345555554332 1221 224788999
Q ss_pred EcCCCC-eEEeecccccc
Q 035998 878 LDGNFG-AHLADFGLARL 894 (1020)
Q Consensus 878 l~~~~~-~kl~Dfg~~~~ 894 (1020)
++.++. +.++|-+.+..
T Consensus 220 ~~~~n~~~~~IDhn~af~ 237 (342)
T 1cja_A 220 LSERGATVVPIDSKIIPL 237 (342)
T ss_dssp EESBTTCEEECSCCCCCC
T ss_pred EeCCCCeEEEEcCCcccc
Confidence 986554 88899888753
No 463
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=20.37 E-value=53 Score=25.16 Aligned_cols=18 Identities=17% Similarity=0.240 Sum_probs=8.5
Q ss_pred EEehhhhhHHHHHHHHHH
Q 035998 672 MAIGITFGSAFLLILIFM 689 (1020)
Q Consensus 672 ~~i~~~~~~~~~~~~~~~ 689 (1020)
+++|.+++++++..++++
T Consensus 12 ivlGg~~~lll~~glcI~ 29 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIF 29 (70)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH
Confidence 345555555444444333
Done!